WO2024169908A1 - Sirna for regulating expression of complement c5, and conjugate, pharmaceutical composition, and use thereof - Google Patents

Sirna for regulating expression of complement c5, and conjugate, pharmaceutical composition, and use thereof Download PDF

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WO2024169908A1
WO2024169908A1 PCT/CN2024/076866 CN2024076866W WO2024169908A1 WO 2024169908 A1 WO2024169908 A1 WO 2024169908A1 CN 2024076866 W CN2024076866 W CN 2024076866W WO 2024169908 A1 WO2024169908 A1 WO 2024169908A1
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nucleotide
sirna
sequence
seq
modified nucleotides
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PCT/CN2024/076866
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Chinese (zh)
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刘楠
陈平
张红丽
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苏州时安生物技术有限公司
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Publication of WO2024169908A1 publication Critical patent/WO2024169908A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/711Natural deoxyribonucleic acids, i.e. containing only 2'-deoxyriboses attached to adenine, guanine, cytosine or thymine and having 3'-5' phosphodiester links
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/7125Nucleic acids or oligonucleotides having modified internucleoside linkage, i.e. other than 3'-5' phosphodiesters
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/713Double-stranded nucleic acids or oligonucleotides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00Drugs for disorders of the urinary system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00Drugs for disorders of the urinary system
    • A61P13/12Drugs for disorders of the urinary system of the kidneys
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P21/00Drugs for disorders of the muscular or neuromuscular system
    • A61P21/04Drugs for disorders of the muscular or neuromuscular system for myasthenia gravis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P27/00Drugs for disorders of the senses
    • A61P27/02Ophthalmic agents
    • CCHEMISTRY; METALLURGY
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    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing

Definitions

  • the present invention belongs to the field of biomedicine technology, and specifically relates to a siRNA for regulating complement C5 expression, a conjugate and a pharmaceutical composition thereof, and uses thereof.
  • the complement system is an ancient host defense system, whose biological origin can be traced back to more than one billion years ago. It was named complement for its auxiliary role in the process of sterilization and phagocytosis. Both innate and adaptive immunity include the complement system, which defends the host's intravascular environment through opsonization and lysis. Generally, the complement system begins with three activation pathways, namely the classical pathway, the lectin pathway, and the alternative pathway. The classical pathway begins with the binding of the C1q fragment of complement factor C1 to the antigen-antibody complex.
  • Lectins are carbohydrate-binding proteins, and the lectin pathway begins with the binding of mannose-binding lectins to polysaccharide or glycoprotein motifs on the surface of foreign cells or damaged host cells.
  • the difference between the alternative activation pathway and the classical activation pathway is that the activation bypasses the three components of C1, C4, and C2, and directly activates C3.
  • C1, C4, and C2 With the participation of factor B, factor D, and properdin (P), C3 convertase and C5 convertase are formed to initiate a cascade of enzymatic reactions. Complement exists in a delicate balance between activation and regulation. When this balance is disrupted, tissues will be damaged and diseases will follow.
  • Complement has been implicated in many different diseases, in some cases driving pathology and in others amplifying or exacerbating the inflammatory and damaging effects of non-complement disease triggers, and anti-complement therapy is thought to play a key role in the treatment of these diseases.
  • C5 plays an important role in the complement cascade reaction and has become the main therapeutic target for many diseases including paroxysmal nocturnal hemoglobinuria (PNH), hemolytic uremic syndrome (aHUS), myasthenia gravis (MG), IgA nephritis, etc.
  • PNH paroxysmal nocturnal hemoglobinuria
  • aHUS hemolytic uremic syndrome
  • MG myasthenia gravis
  • IgA nephritis etc.
  • C5 inhibition can effectively target the terminal complement pathway, blocking the release of C5a and the assembly of the membrane attack complex (MAC).
  • the drugs for the treatment of complement-related diseases are mainly peptides and monoclonal antibodies, and the types of drugs developed with C5 as the target are mainly antibody drugs (see references 1-11); the indications under development are mainly PNH, HUS, and MG; there are many projects in the late stage of development, and two drugs have been approved for marketing: Eculizumab (trade name Soliris) and Ravulizumab (trade name Ultomiris). Although these two drugs can better control hemolysis and reduce inflammatory responses, Eculizumab/Ravulizumab has no effect on some PNH patients with SNP mutations. In addition, antibody drugs have a short half-life, a short duration of effectiveness, and are expensive to use. Obviously, these drugs cannot meet all clinical needs, so the demand for treatments for this type of disease has become increasingly urgent.
  • the purpose of the present invention is to provide a siRNA, its conjugate and pharmaceutical composition and use for regulating the expression of complement component C5 mRNA and protein, by which specific siRNA binds to C5 mRNA to inhibit the translation of mRNA, thereby inhibiting the expression of C5 protein.
  • the present invention provides an siRNA comprising a sense strand and an antisense strand, wherein each nucleotide in the siRNA is independently a modified or unmodified nucleotide, the sense strand comprises the following sequence or a nucleotide sequence with no more than 3 base mutations from the following sequence, and the antisense strand comprises the following sequence or a nucleotide sequence with no more than 5 base mutations from the following sequence.
  • sequence of the sense chain is such as SEQ ID NO:8
  • sequence of the antisense chain is such as SEQ ID NO:84.
  • sequence of the sense chain is SEQ ID NO: 2
  • sequence of the antisense chain is SEQ ID NO: 78.
  • sequence of the sense chain is such as SEQ ID NO:55
  • sequence of the antisense chain is such as SEQ ID NO:131.
  • the sequence of the sense chain is such as SEQ ID NO:1, and the sequence of the antisense chain is such as SEQ ID NO:77; or, the sequence of the sense chain is such as any one of SEQ ID NO:3 to 7, and the sequence of the antisense chain is such as any one of SEQ ID NO:79 to 83; or, the sequence of the sense chain is such as any one of SEQ ID NO:9 to 54, and the sequence of the antisense chain is such as any one of SEQ ID NO:85 to 130; or, the sequence of the sense chain is such as any one of SEQ ID NO:56 to 76, and the sequence of the antisense chain is such as any one of SEQ ID NO:132 to 152.
  • sequence of the sense chain is such as SEQ ID NO:169
  • sequence of the antisense chain is such as SEQ ID NO:170.
  • sequence of the sense strand is such as SEQ ID NO:171
  • sequence of the antisense strand is such as SEQ ID NO:172.
  • the positive strand includes a nucleotide sequence with no more than 2 base mutations and no more than 1 base mutation compared to any of the above nucleotide sequences.
  • the base mutation of the sense strand can be at any position of the nucleotide sequence, for example, at any one, two or three of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth, fifteenth, sixteenth, seventeenth, eighteenth and nineteenth positions.
  • the antisense strand includes a nucleotide sequence with no more than 5 base mutations, a nucleotide sequence with no more than 4 base mutations, a nucleotide sequence with no more than 3 base mutations, a nucleotide sequence with no more than 2 base mutations, and a nucleotide sequence with no more than 1 base mutation compared to any of the above-mentioned nucleotide sequences.
  • the base mutation of the antisense strand can be at any position of the nucleotide sequence, for example, any one, two, three, four or five of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth, fifteenth, sixteenth, seventeenth, eighteenth, nineteenth, twentieth, and twenty-first positions.
  • the base mutation of the sense chain is at the 3' end of its nucleotide sequence
  • the base mutation of the antisense chain is at any one or more of the 5' end, positions 2 to 8, and the last two positions at the 3' end of its nucleotide sequence.
  • the base mutation includes base substitution, insertion or deletion.
  • the base mutation of the sense strand is at the 3' end of its nucleotide sequence
  • the base mutation of the antisense strand is at the 5' end of its nucleotide sequence
  • the number of modified nucleotides in the sense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, or nineteen.
  • the number of modified nucleotides in the antisense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty or twenty-one.
  • all of the nucleotides in the sense strand and the antisense strand are modified nucleotides.
  • the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
  • the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the phosphate group at the 5' end of the antisense strand is replaced by VP, and the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
  • the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 14 and 16 of the antisense strand, the 6th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy-modified nucleotides.
  • the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, the 7th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy-modified nucleotides.
  • the 2'-fluoro modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy modified nucleotides; in the 5' to 3' direction, the phosphate group at the 5' end of the antisense strand is replaced by VP, and the 2'-fluoro The 2'-methoxy modified nucleotides are located at positions 2, 14, and 16 of the antisense strand, the 6th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy modified nucleotides.
  • the 2'-fluoro-modified nucleotides are located at the 7th, 9th and 11th positions of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at the 2nd, 14th and 16th positions of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
  • At least one of the following connections between nucleotides in the siRNA is a phosphorothioate connection:
  • the sense strand comprises a phosphorothioate group located at the following positions:
  • the sense strand contains phosphorothioate groups located at the positions shown below:
  • the positive strand is located between the second and third nucleotides starting from the 5' end.
  • the antisense strand comprises a phosphorothioate group located at the following position:
  • the siRNA is selected from the siRNAs in Table 1 or Table 2.
  • the second aspect of the present invention provides a siRNA conjugate, which comprises one or more of the above-mentioned siRNAs, and one or more conjugated groups conjugated to any position of the siRNA.
  • two, three or four consecutively linked conjugated groups are linked to any position of the siRNA.
  • the conjugate group is attached to the 3' end and/or the 5' end of the sense strand.
  • the siRNA conjugate has any one of the following structures:
  • the siRNA of the present invention is coupled with N-acetylgalactosamine residues and is specifically taken up by liver cells through asialoglycoprotein receptors, so that a relatively long half-life can be maintained, thereby prolonging the drug effect time.
  • the siRNA conjugate is selected from the siRNA conjugates shown in Table 6, Table 9, Table 11, Table 12, Table 13, Table 14 or Table 15.
  • the third aspect of the present invention provides a pharmaceutical composition, which includes the above-mentioned siRNA or the above-mentioned siRNA conjugate, and a pharmaceutically acceptable carrier or excipient.
  • the pharmaceutical composition is used to modulate the expression of complement C5.
  • the fourth aspect of the present invention provides use of the above siRNA, or the above siRNA conjugate, or the above pharmaceutical composition for preparing a medicament for regulating complement C5 expression.
  • the fifth aspect of the present invention provides use of the above siRNA, or the above siRNA conjugate, or the above pharmaceutical composition for preparing a medicament for treating and/or preventing diseases related to the expression of complement C5.
  • the diseases include paroxysmal nocturnal hemoglobinuria, atypical hemolytic uremic syndrome, age-related macular degeneration, myasthenia gravis, IgA nephritis, neuromyelitis optica, and C3 glomerular disease.
  • the sixth aspect of the present invention provides a method for regulating complement C5 expression, comprising contacting a therapeutically effective amount of the siRNA of the present invention, or the siRNA conjugate of the present invention, or the pharmaceutical composition of the present invention with cells expressing C5 or administering it to a subject in need thereof.
  • the present invention also provides a method for treating and/or preventing diseases associated with complement C5 expression, comprising administering a therapeutically effective amount of the siRNA of the present invention, or the siRNA conjugate of the present invention, or the pharmaceutical composition of the present invention to a subject in need thereof.
  • the present invention has the following advantages compared with the prior art:
  • siRNA, siRNA conjugate and pharmaceutical composition provided by the present invention show excellent complement C5 expression inhibition activity in cell experiments and animal experiments, and have good potential for treating diseases associated with complement C5 expression.
  • the siRNA, siRNA conjugate and pharmaceutical composition of the present invention have good tissue specificity and high safety; long duration of efficacy, subcutaneous administration, and high medication compliance; compared with existing drugs of the same type, both efficacy and safety are greatly improved.
  • Figure 1 shows the remaining expression level of C5 mRNA in mouse liver after using the test conjugate in Example 5;
  • FIG2 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 6;
  • FIG3 shows the remaining expression level of C5 mRNA in mouse liver after using the test conjugate in Example 9;
  • FIG4 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 10;
  • FIG5 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 11;
  • Figure 6 shows the remaining expression level of C5 mRNA in cynomolgus monkeys after using the test conjugate in Example 12;
  • Figure 7 shows the remaining expression level of C5 mRNA in crab-eating monkeys after using the test conjugate in Example 14.
  • capital letters A, C, G, and U represent adenosine-3'-phosphate, cytidine-3'-phosphate, guanosine-3'-phosphate, and uridine-3'-phosphate, respectively;
  • a lowercase letter m indicates that the nucleotide adjacent to the left of the letter m is a 2'-methoxy-modified nucleotide;
  • a lowercase letter f indicates that the nucleotide adjacent to the left of the letter f is a 2'-fluoro-modified nucleotide;
  • a lowercase letter s in the middle of a capital letter indicates that the two nucleotides adjacent to the left and right of s are linked by a thiophosphate group; when s is the first at the 3' end, it indicates that the terminal of a nucleotide adjacent to the left of the letter s is a thiophosphate group; when s is the first at the 5' end, it indicates
  • the capital letter P indicates that the nucleotide adjacent to the right of the letter P is a 5'-phosphate nucleotide; the letter combination VP indicates that the nucleotide adjacent to the right of the letter combination VP is a nucleotide modified with vinyl phosphate (5'-(E)-vinylphosphonate, E-VP); dT is deoxythymidine.
  • L96 represents N-[tri(GalNAc-alkyl)-amide decanoyl]-4-hydroxyprolinol-(GalNAc-alkyl); SA20 represents N-(GalNAc-alkanoyl)-4-hydroxyprolinol (for specific structure and synthesis, see US2022/0008541A1).
  • LNA is shown in formula (1)
  • ENA is shown in formula (2)
  • cET BNA is shown in formula (3)
  • UNA is shown in formula (4)
  • GNA is shown in formula (5)
  • SAFE-01 is shown in formula (6):
  • Base represents a natural nucleobase, a modified nucleobase, a universal base, such as A, U, G or C.
  • R is selected from H, OH or alkoxy (O-alkyl).
  • R1 is H, OH or CH 3 . According to some embodiments, R1 is H. According to some embodiments, R1 is OH. According to some embodiments, R1 is CH 3 .
  • the nucleoside monomer refers to the modified or unmodified nucleoside phosphoramidite monomer used in the solid phase phosphoramidite synthesis according to the type and order of nucleotides in the siRNA or siRNA conjugate to be prepared.
  • Solid phase phosphoramidite synthesis is a method used in RNA synthesis known to those skilled in the art.
  • the nucleoside monomers used in the present disclosure are all commercially available.
  • conjugation refers to the connection between two or more chemical moieties, each having a specific function, in a covalently linked manner; accordingly, “conjugate” refers to a compound formed by covalently linking the chemical moieties.
  • siRNA conjugate means a compound formed by covalently linking one or more chemical moieties having a specific function to siRNA.
  • siRNA conjugates should be understood as a general term for multiple siRNA conjugates or an siRNA conjugate shown by a certain chemical formula.
  • conjugated molecule should be understood as a specific compound that can be conjugated to siRNA through a reaction to ultimately form the siRNA conjugate of the present disclosure.
  • hydroxyl protecting groups can be used in the present disclosure.
  • the protecting group makes the chemical functional group insensitive to specific reaction conditions, and the functional group in the molecule can be added and removed without substantially damaging the rest of the molecule.
  • Representative hydroxyl protecting groups are disclosed in Beaucage et al., Tetrahedron 1992, 48, 2223-2311, and Greene and Wuts, Protective Groups in Organic Synthesis, Chapter 2, 2d ed, John Wiley & Sons, New York, 1991, each of which is incorporated herein by reference in its entirety.
  • the protecting group is stable under alkaline conditions, but can be removed under acidic conditions.
  • non-exclusive examples of hydroxyl protecting groups that can be used herein include dimethoxytrityl (DMT), monomethoxytrityl, 9-phenyloxanthene-9-yl (Pixyl) and 9-(p-methoxyphenyl)oxanthene-9-yl (Mox).
  • non-exclusive examples of hydroxy protecting groups that may be used herein include Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-dimethoxytrityl), and TMTr (4,4',4"-trimethoxytrityl).
  • the pharmaceutically acceptable carrier described in the present disclosure can be a carrier conventionally used in the field of siRNA administration, such as but not limited to magnetic nanoparticles (such as nanoparticles based on Fe3O4 or Fe2O3), carbon nanotubes, mesoporous silicon, calcium phosphate nanoparticles, polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, poly(L-lysine), PLL, chitosan (c hitosan), 1,2-dioleoyl-3-trimethylammonium-propane (1,2-dioleoyl-3-trimethylammonium-propane, DOTAP), poly D- or L-lactic/glycolic acid copolymer (poly(D&L-lactic/glycolic acid) copolymer, PLGA), poly(aminoethyl ethylene phosphate) (poly(2-aminoethyl ethylene phosphate), PPEEA) and
  • the excipients can be one or more of various preparations or compounds conventionally used in the art.
  • the other pharmaceutically acceptable excipients can include at least one of a pH buffer, a protective agent and an osmotic pressure regulator.
  • subject refers to any animal, such as a mammal or marsupial.
  • Subjects of the present disclosure include, but are not limited to, humans, non-human primates (e.g., rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cows, rabbits, sheep, rats, and poultry of any kind.
  • non-human primates e.g., rhesus monkeys or other types of macaques
  • mice pigs, horses, donkeys, cows, rabbits, sheep, rats, and poultry of any kind.
  • treatment refers to an approach to obtaining beneficial or desired results, including but not limited to a therapeutic benefit.
  • “Therapeutic benefit” means eradication or amelioration of the underlying disorder being treated.
  • a therapeutic benefit is obtained by eradication or amelioration of one or more physiological symptoms associated with the underlying disorder, such that an improvement is observed in the subject, although the subject may still be afflicted with the underlying disorder.
  • prevention refers to an approach to obtaining beneficial or desired results, including but not limited to a prophylactic benefit.
  • a prophylactic benefit siRNA, siRNA conjugate, or pharmaceutical composition can be administered to a subject at risk for a particular disease, or to a subject reporting one or more physiological symptoms of a disease, even though a diagnosis of the disease may not have been made.
  • the conjugation site of siRNA and conjugation group can be at the 3' end or 5' end of the siRNA sense strand, at the 3' end or 5' end of the antisense strand, or in the internal sequence of siRNA. In some embodiments, the conjugation site of siRNA and conjugation group is at the 3' end of the siRNA sense strand.
  • the conjugated group can be connected to the phosphate group, 2'-hydroxyl group or base of the nucleotide. In some embodiments, the conjugated group can also be connected to the 3'-hydroxyl group, in which case the nucleotides are connected by a 2'-5' phosphodiester bond.
  • the conjugated group is usually connected to the phosphate group of the nucleotide; when the conjugated group is connected to the internal sequence of the siRNA, the conjugated group is usually connected to the ribose sugar ring or the base.
  • connection methods can be referred to in the literature: Muthiah Manoharan et.al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5): 1181-7.
  • the siRNA and the conjugated group can be connected by acid-labile or reducible chemical bonds, which can be degraded in the acidic environment of the cell endosome, thereby making the siRNA free.
  • the conjugated group can be connected to the sense strand of the siRNA, thereby minimizing the effect of conjugation on the activity of the siRNA.
  • multiple conjugated groups can be linked using phosphate groups or thiophosphate groups.
  • the pharmaceutically acceptable targeting group may be a ligand conventionally used in the field of siRNA administration, such as various ligands described in WO2009082607A2, which is incorporated herein by reference in its entirety.
  • SD means standard deviation and AVG means average.
  • the reagent can be obtained from any supplier of molecular biology reagents in a quality/purity suitable for molecular biology applications.
  • siRNA design human C5 (NM_001735.3) was used as the target gene, and 19/21nt siRNA was designed to meet the general rules of active siRNA.
  • Table 1 The detailed list of unmodified sense and antisense strand sequences is shown in Table 1 below, and the detailed list of modified sense and antisense strand sequences is shown in Table 2 below.
  • the coupling time of all phosphoramidites was 6 minutes (min)
  • 5-ethylthio-1H-tetrazole (ETT) was used as an activator
  • 0.6M acetonitrile solution 0.22M phenylacetyl disulfide (PADS) dissolved in a 1:1 volume ratio of acetonitrile and trimethylpyridine (Suzhou Kelema) solution was used as a sulfurization reagent
  • the sulfurization reaction time was 3 minutes (min)
  • iodine pyridine/water solution Kerma
  • the oxidation reaction time was 2 minutes (min).
  • the oligoribonucleotides were cleaved from the solid support and soaked in a 3:1 28% ammonia and ethanol solution at 50°C for 16 hours. Then, the supernatant was transferred to another centrifuge tube by high-speed centrifugation, concentrated and evaporated to dryness, and purified by C18 reverse chromatography with a mobile phase of 0.1M triethylamine acetate (TEAA) and acetonitrile, and 4,4'-dimethoxytrityl (DMTr) was removed using a 3% trifluoroacetic acid solution. The target oligonucleotides were collected and freeze-dried, identified as the target product by LC-MS, and then quantified by UV (260nm).
  • TEAA triethylamine acetate
  • DMTr 4,4'-dimethoxytrityl
  • the single-stranded oligonucleotides obtained were annealed according to an equimolar ratio and two complementary paired sequences.
  • the final double-stranded siRNA was dissolved in 1X PBS and adjusted to the required concentration for the experiment.
  • Hep3B cells were cultured in DMEM high glucose medium containing 10% fetal bovine serum at 37°C and 5% CO 2. During transfection, Hep3B cells were seeded in 96-well plates at a seeding density of 20,000 cells per well with 100 ⁇ L of culture medium per well.
  • siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150), and the final concentration of siRNA transfection was 10 nM.
  • RNA was isolated from cells using a cell RNA extraction kit (Zhiang Bio, MNTR/FX96), and reverse transcription was performed using a reverse transcription kit (Takara PrimeScript TM II 1st Strand cDNA Synthesis Kit, 6210A) according to standard procedures, and quantitative real-time PCR was performed using a qPCR reaction kit (Vazyme, Q711) to determine the mRNA level of C5, and the mRNA level of C5 was corrected according to the level of the GAPDH internal reference gene.
  • Reverse primer TCGGGATGAAGGAACCATGT (SEQ ID NO: 154);
  • Reverse primer CCAGCATCGCCCCACTTGA (SEQ ID NO: 156);
  • results are expressed as the remaining percentage relative to the C5 mRNA expression of cells not treated with siRNA (which is 100%). The smaller the remaining percentage, the higher the inhibitory activity of siRNA. The results are shown in Table 3.
  • siRNAs in Table 3 that showed 65% or higher in vitro inhibition were screened at two concentrations (10 nM, 0.1 nM) in Hep3B cells.
  • Hep3B cells were cultured in DMEM high-glucose medium containing 10% fetal bovine serum at 37°C and 5% CO 2. 24 h before transfection, Hep3B cells were seeded in 96-well plates at a seeding density of 10,000 cells per well with 100 ⁇ L of culture medium per well.
  • siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150) at a final concentration of 10 nM and 1 nM. After 24 hours of treatment, the mRNA level of C5 was determined in the same manner as in Example 2.
  • the desired conjugated molecule is used to start the cycle, and the nucleoside monomers are connected one by one from the 3'-5' direction according to the nucleotide arrangement order.
  • Each connection of a nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or sulfurization. The same synthesis conditions are used for the sense chain and the antisense chain.
  • the nucleoside monomer was provided in an acetonitrile solution with a concentration of 0.05 M.
  • the conditions of the deprotection reaction in each step were the same, namely, the temperature was 25° C., the reaction time was 3 minutes, the deprotection reagent was DCA, and the injection volume was 180 ⁇ L.
  • reaction conditions for each coupling step were the same, including a temperature of 25°C, a reaction time of 3 minutes, a nucleoside monomer injection volume of 90 ⁇ L, and a catalyst ACT injection volume of 110 ⁇ L.
  • the capping conditions were the same in each step, including a temperature of 25°C and a reaction time of 2 minutes.
  • the capping reagent solution was a mixed solution of CapA and CapB at a molar ratio of 1:1.
  • the capping reagent injection volume was 180 ⁇ L.
  • the oxidation reaction conditions were the same in each step, including a temperature of 25°C, a reaction time of 3 minutes, and an injection volume of 180 ⁇ L of the oxidation reagent OXD.
  • the reaction conditions for each step of the sulfurization reaction were the same, including a temperature of 25 °C, a reaction time of 4 minutes, and a sulfurization reagent of 0.05 M PADS in pyridine acetonitrile.
  • the injection volume of the sulfurization reagent was 180 ⁇ L.
  • the nucleic acid sequence connected to the solid phase carrier is cut, deprotected, purified, desalted, and then freeze-dried to obtain the sense chain and antisense chain.
  • TEAA triethylamine acetate
  • the 96-well plate was rinsed three times with 0.8 mL of 3% trifluoroacetic acid to remove DMT, and the adsorption layer was observed to turn orange-red.
  • the detection method is as follows: Waters Acquity UPLC-LTQ LCMS (column: ACQUITY UPLC BEH C18) was used to detect the purity of the above-mentioned sense chain and antisense chain and analyze the molecular weight. The measured values are consistent with the theoretical values, indicating that the synthesized sense chain and antisense chain are conjugated with groups at the 3' end and/or 5' end.
  • the annealing operation is as follows: the sense chain and antisense chain synthesized in step 1 are dissolved in water for injection respectively to prepare a solution of 0.1 mg/mL-40 mg/mL, and the mixture is calibrated with a concentration meter to equimolar ratio, heated at 90°C for 5 minutes, and then slowly cooled naturally to form a double-stranded structure through hydrogen bonding, and samples are taken for testing the SEC purity of the product.
  • the double-stranded samples were lyophilized.
  • mice SPF female C57BL/6J mice aged 6-8 weeks were selected, and the weight of the mice was 20 ⁇ 2g.
  • the mice were weighed and observed before administration, and animals with uniform weight and normal condition were randomly divided into groups, with 3 mice in each group.
  • the mice in the experimental group were given the conjugate, and the mice in the vehicle group were given phosphate buffered saline (PBS).
  • PBS phosphate buffered saline
  • the conjugate was administered subcutaneously at a dose of 3 mg/kg per mouse. Seven days after administration, the animals were sacrificed by cervical dislocation, and the liver tissue was taken. According to conventional methods, the liver was cut into pieces and placed in RNALater (Invitrogen, AM7021M) for subsequent RNA extraction.
  • RNALater Invitrogen, AM7021M
  • the liver tissue was placed in a lysis buffer (Zhiang Bio, MNTR/FX96) and ground (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B), and C5 was detected by fluorescence qPCR (Vazyme, Q711). mRNA expression levels.
  • Target gene C5 primer
  • Reverse primer CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 158);
  • Reverse primer GATGCAGGGATGATGTTC (SEQ ID NO: 160);
  • the results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%).
  • the sequences of the conjugates for injection of the present invention are shown in Table 6, and the positive control sequences are shown in Table 7.
  • the conjugates in Table 6 and Table 7 were prepared according to the method of Example 4. After using the tested conjugates, the residual expression level of C5 mRNA in the liver of mice is shown in Table 8 and Figure 1. As shown in Figure 1, compared with the positive compound SD003317, the conjugates SD003562, SD003565, SD003569, and SD003571 showed better inhibitory activity.
  • the liver tissue was placed in a lysis solution (Zhiang Bio, MNTR/FX96) and ground (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B), and the expression level of the C5 gene was measured by fluorescence qPCR (Vazyme, Q711).
  • Target gene C5 primer
  • Reverse primer TGGGCACACGGTGTTTGTAT (SEQ ID NO: 166);
  • Reverse primer GTCATTGAGAGCAATGCCAGC (SEQ ID NO:168).
  • the results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%).
  • the conjugate sequence for injection is shown in Table 9, and the conjugate is prepared according to the method of Example 4.
  • the residual expression level of C5 mRNA in rat liver is shown in Table 10 and Figure 2.
  • Figure 2 compared with the positive compound SD003317, the conjugates SD003574, SD003575, SD003576, and SD003577 showed better inhibitory activity.
  • reaction solution was extracted with saturated sodium bicarbonate solution and ethyl acetate for 3 times, the organic phases were combined and spin-dried, and the crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate 10:1 to 8:1) to obtain a white solid compound 3-1 (16.1 g, reaction yield 99%).
  • reaction solution was dissolved in methyl tert-butyl ether (10.0 mL) and 1% sodium hydroxide solution (10.0 mL), and continued to stir at room temperature for 0.5 hours.
  • the remaining system was extracted with saturated sodium bicarbonate solution and dichloromethane for 3 times, and the organic phases were combined and spin-dried.
  • the crude product was used on a C18 reverse phase column to obtain a white solid compound SA000015 (1.5 g, reaction yield 55%).
  • Dissolve compound 1 (9.44 g, 79.9 mmol, 9.17 mL, 1.0 equiv) in 175 mL of anhydrous tetrahydrofuran, cool to -70°C to -78°C, and replace with nitrogen, and add the solution obtained in the previous step dropwise (slowly dropwise, the dropwise addition process lasts for at least 10 minutes).
  • the reaction solution is stirred at -70°C to -78°C for half an hour.
  • hexamethylphosphoric acid triamide (26.1 g, 146 mmol, 25.6 mL, 1.82 equiv) and benzyl chloromethyl ether (17.5 g, 112 mmol, 15.5 mL, 1.4 equiv) were slowly added dropwise to the previous reaction solution (slowly added dropwise, the addition process lasted for at least 10 minutes), and after the addition was completed, the temperature was raised to 0°C and stirring was continued for 3 hours. TLC and LCMS detected the disappearance of compound 1. 600 mL of saturated ammonium chloride solution was added in two batches to quench the reaction, and the mixture was extracted with 200 mL of methyl tert-butyl ether.
  • N-benzyloxycarbonyl-L-serine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (35.0 mmol, 8.4 g) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 52.5 mmol, 19.9 g), compound 1-2 (1.1 equiv, 38.5 mmol, 16.1 g) and N,N-diisopropylethylamine (3.0 equiv, 105.0 mmol, 13.5 g) were added at room temperature, followed by stirring at room temperature for 1 hour.
  • compound 1-4 (1.1 equiv, 23.0 mmol, 11.6 g) and N,N-diisopropylethylamine (3.0 equiv, 62.7 mmol, 8.1 g) were added to the reaction system, and then stirring was continued at room temperature for 1 hour. After the reaction, 150 mL of dichloromethane was added to the reaction solution, and the mixture was washed with 150 mL of saturated sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and concentrated.
  • mice with a body weight of 20 ⁇ 2g. Weigh the mice and observe their condition before administration. Select animals with uniform body weight and normal condition and randomly divide them into groups, with 4 mice in each group. The mice in the experimental group were given the conjugate, and the mice in the vehicle group were given The mice were given phosphate buffered saline (PBS) and subcutaneously administered with a dose of 1 mg/kg of the conjugate per mouse. 7 and 21 days after administration, the animals were sacrificed by cervical dislocation, and liver tissues were obtained to detect the expression level of C5 mRNA in the same manner as in Example 5.
  • PBS phosphate buffered saline
  • the results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%).
  • the conjugate sequences used for injection are shown in Table 11.
  • the conjugates are prepared according to the method of Example 4 using L-96 or the conjugate molecules prepared in Example 8 as starting materials, respectively.
  • the synthesis methods of Ugo, Cgo, and Ago are shown in Example 7.
  • the residual expression level of C5 mRNA in mouse liver is shown in Figure 3.
  • Figure 3 compared with the positive compound SD003317, the conjugates SD004001 and SD004071 showed better inhibitory activity.
  • sequence of the positive chain of the naked sequence of SD004071 is AUAACUCACUAUAAUUACA (SEQ ID NO: 169), and the sequence of the antisense chain is UGUAAUUAUAGUGAGUUAUUU (SEQ ID NO: 170).
  • mice 6-8 week old SD female SPF rats were selected, and the weight of the rats was 200 ⁇ 2g.
  • the rats were weighed and observed before administration, and animals with uniform weight and normal state were randomly divided into groups of 4, wherein the rats in the experimental group were given the conjugate, and the rats in the vehicle group were given phosphate buffered saline (PBS), and each rat was given a dose of 2.5 mg/kg of the conjugate for subcutaneous administration. 7 days and 21 days after administration, the animals were sacrificed by cervical dislocation, liver tissue was taken, and the expression level of the C5 gene was measured by the same method as in Example 6.
  • PBS phosphate buffered saline
  • the results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%).
  • the conjugate sequence for injection is shown in Table 12, and the conjugate is prepared according to the method of Example 4.
  • the residual expression level of C5 mRNA in rat liver is shown in Figure 4.
  • Figure 4 compared with the positive compound SD003317, the conjugate SD003988 showed better inhibitory activity.
  • sequence of the positive chain of the naked sequence of SD003988 is CUAUGACAAUGGAUUUCUA (SEQ ID NO: 171), and the sequence of the antisense chain is UAGAAAUCCAUUGUCAUAGGU (SEQ ID NO: 172).
  • mice 6-8 week old SD female SPF rats were selected, and the weight of the rats was 200 ⁇ 2g.
  • the rats were weighed and observed before administration, and animals with uniform weight and normal state were randomly divided into groups of 4, wherein the rats in the experimental group were given the conjugate, and the rats in the vehicle group were given phosphate buffered saline (PBS), and the conjugate was administered subcutaneously at a dose of 1 mg/kg per rat. 7 days and 21 days after administration, the animals were sacrificed by cervical dislocation, liver tissue was taken, and the expression level of the C5 gene was measured in the same manner as in Example 6.
  • PBS phosphate buffered saline
  • the results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%).
  • the conjugate sequence for injection is shown in Table 13, and the conjugate is prepared according to the method of Example 4.
  • the results of the residual expression level of C5 mRNA are shown in Figure 5.
  • Figure 5 compared with the positive compound SD003317, the conjugate SD004072 showed better inhibitory activity.
  • siRNA was selected for conjugation synthesis, and the in vivo activity of the siRNA conjugate was further evaluated in cynomolgus monkeys.
  • Animals with uniform body weight and normal state were randomly divided into groups, 3 in each group, and the conjugates in Table 14 were given respectively, and the conjugates were prepared according to the method of Example 4.
  • Subcutaneous administration was performed according to a dose of 5 mg/kg given to each monkey. Blood was collected and serum was collected on -13 days, -7 days, 0 days before administration, and 7 days, 14 days, 21 days, 28 days, 35 days and 44 days after administration.
  • the C5 protein level in serum was detected by Elisa method. Compared with the average level of C5 in serum on -7 and 0 days before administration, the results of the remaining percentage are shown in Figure 6.
  • the activity of SD004072 in cynomolgus monkeys is significantly better than that of SD004073.
  • N-benzyloxycarbonyl-L-serine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (15.0 mmol, 3.58 g) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 22.5 mmol, 8.53 g), compound 1-2 (1.1 equiv, 16.5 mmol, 3.31 g) and N,N-diisopropylethylamine (3.0 equiv, 45.0 mmol, 5.78 g) were added at room temperature, followed by stirring at room temperature for 1 hour.
  • siRNA was selected for conjugation synthesis, and the in vivo activity of the siRNA conjugate was further evaluated in cynomolgus monkeys.
  • Animals with uniform body weight and normal state were randomly divided into groups, 3 in each group, and the conjugates in Table 15 were given respectively.
  • the conjugates were prepared according to the method of Example 4 using SA102 of Example 13 as the starting material.
  • Subcutaneous administration was performed according to a dose of 3 mg/kg given to each monkey. Blood was collected and serum was collected on days -7 before administration, 0 days, and 7 days, 14 days, 28 days, 42 days, and 56 days after administration.
  • the C5 protein level in serum was detected by Elisa method. Compared with the average level of C5 in serum on days -7 and 0 before administration, the results of the remaining percentage are shown in Figure 7.
  • the activity of SD004727 and SD004728 in cynomolgus monkeys is comparable.

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Abstract

The present invention relates to an siRNA for regulating the expression of complement C5, and a conjugate, pharmaceutical composition and the use thereof. The siRNA comprises a sense strand and an antisense strand, and each nucleotide in the siRNA is independently a modified or unmodified nucleotide. The sense strand comprises a sequence as shown in SEQ ID NO: 1-76, 169 and 171 or a nucleotide sequence having no more than three base mutations in the sequence; and the antisense strand comprises a sequence as shown in SEQ ID NO: 77-152, 170 and 172 or a nucleotide sequences having no more than five base mutations in the sequence. The siRNA, the siRNA conjugate and the pharmaceutical composition provided in the present invention show excellent inhibitory activity against complement C5 expression in cell experiments and animal experiments, and have good potential for treating diseases associated with complement C5 expression.

Description

一种调节补体C5表达的siRNA、其缀合物和药物组合物及用途A siRNA for regulating complement C5 expression, its conjugate and pharmaceutical composition and use thereof 技术领域Technical Field
本发明属于生物医药技术领域,具体涉及一种调节补体C5表达的siRNA、其缀合物和药物组合物及用途。The present invention belongs to the field of biomedicine technology, and specifically relates to a siRNA for regulating complement C5 expression, a conjugate and a pharmaceutical composition thereof, and uses thereof.
背景技术Background Art
补体系统是一种古老的宿主防御系统,其生物起源可以追溯至十多亿年前,因其在杀菌和吞噬过程中的辅助作用被命名为补体(Complement)。固有免疫和适应性免疫都包含补体系统,它通过调理和裂解作用来保卫宿主的血管内环境。通常,补体系统始于三种激活途径,分别是经典途径、凝集素途径和旁路途径。经典途径始于补体因子C1的C1q片段与抗原-抗体复合物的结合。凝集素是碳水化合物结合蛋白,凝集素途径始于甘露糖结合凝集素与外源细胞或损伤宿主细胞表面的多糖或糖蛋白基序结合。旁路激活途径与经典激活途径不同之处在于激活是越过了C1、C4、C2三种成分,直接激活C3,在B因子、D因子和备解素(P)参与下,形成C3转化酶和C5转化酶,启动级联酶促反应。补体存在于激活和调节之间的微妙平衡中。当这种平衡被破坏时,组织就会受损,疾病也会随之而来。补体与许多不同的疾病有关,在某些情况下,驱动病理,而在其他情况下,放大或加剧非补体疾病触发器的炎症和破坏性影响,抗补体治疗被认为在这些疾病的治疗中起着关键作用。The complement system is an ancient host defense system, whose biological origin can be traced back to more than one billion years ago. It was named complement for its auxiliary role in the process of sterilization and phagocytosis. Both innate and adaptive immunity include the complement system, which defends the host's intravascular environment through opsonization and lysis. Generally, the complement system begins with three activation pathways, namely the classical pathway, the lectin pathway, and the alternative pathway. The classical pathway begins with the binding of the C1q fragment of complement factor C1 to the antigen-antibody complex. Lectins are carbohydrate-binding proteins, and the lectin pathway begins with the binding of mannose-binding lectins to polysaccharide or glycoprotein motifs on the surface of foreign cells or damaged host cells. The difference between the alternative activation pathway and the classical activation pathway is that the activation bypasses the three components of C1, C4, and C2, and directly activates C3. With the participation of factor B, factor D, and properdin (P), C3 convertase and C5 convertase are formed to initiate a cascade of enzymatic reactions. Complement exists in a delicate balance between activation and regulation. When this balance is disrupted, tissues will be damaged and diseases will follow. Complement has been implicated in many different diseases, in some cases driving pathology and in others amplifying or exacerbating the inflammatory and damaging effects of non-complement disease triggers, and anti-complement therapy is thought to play a key role in the treatment of these diseases.
在许多补体成分中,C5在补体级联反应中具有重要作用,并已成为包括阵发性睡眠性血红蛋白尿症(PNH)、溶血性尿毒症综合征(aHUS)、重症肌无力(MG)、IgA肾炎等在内的许多疾病的主要治疗靶点。C5抑制能有效地靶向末端补体通路,阻断C5a的释放和膜攻击复合物(MAC)组装。目前,针对治疗补体相关的疾病的药物主要为多肽和单克隆抗体,以C5为靶点的药物研发类型主要是抗体类药物(参见,参考文献1-11);在研适应症以PNH、HUS、MG为主;有多个项目处于后期开发阶段,目前有两款药物已批准上市:Eculizumab(商品名Soliris)和Ravulizumab(商品名Ultomiris)。虽然这两个药物可以较好地控制溶血、减少炎症反应,但Eculizumab/Ravulizumab对部分有SNP突变的PNH患者没有效果。此外抗体类药物半衰期短,持续有效时间短,用药费用昂贵。显然这些药物不能满足所有的临床需求,因此针对该类疾病的治疗方法的需求变得越来越迫切。Among many complement components, C5 plays an important role in the complement cascade reaction and has become the main therapeutic target for many diseases including paroxysmal nocturnal hemoglobinuria (PNH), hemolytic uremic syndrome (aHUS), myasthenia gravis (MG), IgA nephritis, etc. C5 inhibition can effectively target the terminal complement pathway, blocking the release of C5a and the assembly of the membrane attack complex (MAC). At present, the drugs for the treatment of complement-related diseases are mainly peptides and monoclonal antibodies, and the types of drugs developed with C5 as the target are mainly antibody drugs (see references 1-11); the indications under development are mainly PNH, HUS, and MG; there are many projects in the late stage of development, and two drugs have been approved for marketing: Eculizumab (trade name Soliris) and Ravulizumab (trade name Ultomiris). Although these two drugs can better control hemolysis and reduce inflammatory responses, Eculizumab/Ravulizumab has no effect on some PNH patients with SNP mutations. In addition, antibody drugs have a short half-life, a short duration of effectiveness, and are expensive to use. Obviously, these drugs cannot meet all clinical needs, so the demand for treatments for this type of disease has become increasingly urgent.
发明内容Summary of the invention
本发明的目的在于提供一种调节补体成分C5 mRNA和蛋白表达的siRNA、其缀合物和药物组合物及用途,通过特异性的siRNA与C5 mRNA结合,抑制mRNA的翻译,从而抑制C5蛋白的表达。The purpose of the present invention is to provide a siRNA, its conjugate and pharmaceutical composition and use for regulating the expression of complement component C5 mRNA and protein, by which specific siRNA binds to C5 mRNA to inhibit the translation of mRNA, thereby inhibiting the expression of C5 protein.
为达到上述目的,本发明采用的技术方案是:To achieve the above object, the technical solution adopted by the present invention is:
本发明第一方面提供一种siRNA,其包括正义链和反义链,所述siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,所述正义链包括如下序列或与如下序列不超过3个碱基突变的核苷酸序列,所述反义链包括如下序列或与如下序列不超过5个碱基突变的核苷酸序列。In a first aspect, the present invention provides an siRNA comprising a sense strand and an antisense strand, wherein each nucleotide in the siRNA is independently a modified or unmodified nucleotide, the sense strand comprises the following sequence or a nucleotide sequence with no more than 3 base mutations from the following sequence, and the antisense strand comprises the following sequence or a nucleotide sequence with no more than 5 base mutations from the following sequence.
根据一种实施方式,所述正义链的序列如SEQ ID NO:8,所述反义链的序列如SEQ ID NO:84。According to one embodiment, the sequence of the sense chain is such as SEQ ID NO:8, and the sequence of the antisense chain is such as SEQ ID NO:84.
根据另一种实施方式,所述正义链的序列SEQ ID NO:2,所述反义链的序列如SEQ ID NO:78。According to another embodiment, the sequence of the sense chain is SEQ ID NO: 2, and the sequence of the antisense chain is SEQ ID NO: 78.
根据再一种实施方式,所述正义链的序列如SEQ ID NO:55,所述反义链的序列如SEQ ID NO:131。According to another embodiment, the sequence of the sense chain is such as SEQ ID NO:55, and the sequence of the antisense chain is such as SEQ ID NO:131.
根据再一些实施方式,所述正义链的序列如SEQ ID NO:1,所述反义链的序列如SEQ ID NO:77;或者,所述正义链的序列如SEQ ID NO:3至7中任一项,所述反义链的序列如SEQ ID NO:79至83中任一项;或者,所述正义链的序列如SEQ ID NO:9至54中任一项,所述反义链的序列如SEQ ID NO:85至130中任一项;或者,所述正义链的序列如SEQ ID NO:56至76中任一项,所述反义链的序列如SEQ ID NO:132至152中任一项。According to some further embodiments, the sequence of the sense chain is such as SEQ ID NO:1, and the sequence of the antisense chain is such as SEQ ID NO:77; or, the sequence of the sense chain is such as any one of SEQ ID NO:3 to 7, and the sequence of the antisense chain is such as any one of SEQ ID NO:79 to 83; or, the sequence of the sense chain is such as any one of SEQ ID NO:9 to 54, and the sequence of the antisense chain is such as any one of SEQ ID NO:85 to 130; or, the sequence of the sense chain is such as any one of SEQ ID NO:56 to 76, and the sequence of the antisense chain is such as any one of SEQ ID NO:132 to 152.
根据再一种实施方式,所述正义链的序列如SEQ ID NO:169,所述反义链的序列如SEQ ID NO:170。According to another embodiment, the sequence of the sense chain is such as SEQ ID NO:169, and the sequence of the antisense chain is such as SEQ ID NO:170.
根据再一种实施方式,所述正义链的序列如SEQ ID NO:171,所述反义链的序列如SEQ ID NO:172。 According to yet another embodiment, the sequence of the sense strand is such as SEQ ID NO:171, and the sequence of the antisense strand is such as SEQ ID NO:172.
根据某些实施方式,所述正义链包括与上述核苷酸序列中的任一条不超过2个碱基突变的核苷酸序列,不超过1个碱基突变的核苷酸序列。According to certain embodiments, the positive strand includes a nucleotide sequence with no more than 2 base mutations and no more than 1 base mutation compared to any of the above nucleotide sequences.
根据某些实施方式,所述正义链的碱基突变可以在核苷酸序列的任意位置,例如第一位、第二位、第三位、第四位、第五位、第六位、第七位、第八位、第九位、第十位、第十一位、第十二位、第十三位、第十四位、第十五位、第十六位、第十七位、第十八位、第十九位中的任意一位、两位或三位。According to certain embodiments, the base mutation of the sense strand can be at any position of the nucleotide sequence, for example, at any one, two or three of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth, fifteenth, sixteenth, seventeenth, eighteenth and nineteenth positions.
根据某些实施方式,所述反义链包括与上述核苷酸序列中的任一条不超过5个碱基突变的核苷酸序列,不超过4个碱基突变的核苷酸序列,不超过3个碱基突变的核苷酸序列,不超过2个碱基突变的核苷酸序列,不超过1个碱基突变的核苷酸序列。According to certain embodiments, the antisense strand includes a nucleotide sequence with no more than 5 base mutations, a nucleotide sequence with no more than 4 base mutations, a nucleotide sequence with no more than 3 base mutations, a nucleotide sequence with no more than 2 base mutations, and a nucleotide sequence with no more than 1 base mutation compared to any of the above-mentioned nucleotide sequences.
根据某些实施方式,所述反义链的碱基突变可以在核苷酸序列的任意位置,例如第一位、第二位、第三位、第四位、第五位、第六位、第七位、第八位、第九位、第十位、第十一位、第十二位、第十三位、第十四位、第十五位、第十六位、第十七位、第十八位、第十九位、第二十位、第二十一位中的任意一位、两位、三位、四位或五位。According to certain embodiments, the base mutation of the antisense strand can be at any position of the nucleotide sequence, for example, any one, two, three, four or five of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth, fifteenth, sixteenth, seventeenth, eighteenth, nineteenth, twentieth, and twenty-first positions.
根据某些实施方式,按照5’到3’的方向,所述正义链的碱基突变在其核苷酸序列的3’末端,所述反义链的碱基突变在其核苷酸序列的5’末端、第2~8位、3’端最后两位中的任意一位或多位。According to certain embodiments, in the 5' to 3' direction, the base mutation of the sense chain is at the 3' end of its nucleotide sequence, and the base mutation of the antisense chain is at any one or more of the 5' end, positions 2 to 8, and the last two positions at the 3' end of its nucleotide sequence.
根据某些实施方式,所示碱基突变包括碱基的替换、插入或者缺失。According to certain embodiments, the base mutation includes base substitution, insertion or deletion.
根据某些实施方式,按照5’到3’的方向,所述正义链的碱基突变在其核苷酸序列的3’末端,所述反义链的碱基突变在其核苷酸序列的5’末端。According to certain embodiments, in the 5' to 3' direction, the base mutation of the sense strand is at the 3' end of its nucleotide sequence, and the base mutation of the antisense strand is at the 5' end of its nucleotide sequence.
在某些实施方案中,所述修饰的核苷酸为2’-甲氧基修饰的核苷酸、2’-氟代修饰的核苷酸、2’-O-CH2-CH2-O-CH3修饰的核苷酸、2’-O-CH2-CH=CH2修饰的核苷酸、2’-CH2-CH2-CH=CH2修饰的核苷酸、2’-脱氧基核苷酸、2’‐甲氧基乙基修饰的核苷酸、硫代磷酸酯键修饰的核苷酸、VP修饰的核苷酸、LNA、ENA、cET BNA、UNA、GNA或SAFE-01中的一种或多种的组合,其中,SAFE-01所示结构式中的R1为H、OH或CH3,Base为天然核碱基、修饰的核碱基、通用碱基或H原子。In certain embodiments, the modified nucleotide is a 2'-methoxy-modified nucleotide, a 2'-fluoro-modified nucleotide, a 2'-O-CH 2 -CH 2 -O-CH 3 -modified nucleotide, a 2'-O-CH 2 -CH=CH 2 -modified nucleotide, a 2'-CH 2 -CH 2 -CH=CH 2 -modified nucleotide, a 2'-deoxy nucleotide, a 2'-methoxyethyl-modified nucleotide, a phosphorothioate bond-modified nucleotide, a VP-modified nucleotide, LNA, ENA, cET BNA, UNA, GNA or a combination of one or more of SAFE-01, wherein R1 in the structural formula shown in SAFE-01 is H, OH or CH 3 , and Base is a natural nucleobase, a modified nucleobase, a universal base or an H atom.
在某些实施方案中,所述正义链中的修饰核苷酸的个数为一个、两个、三个、四个、五个、六个、七个、八个、九个、十个、十一个、十二个、十三个、十四个、十五个、十六个、十七个、十八个或十九个。In certain embodiments, the number of modified nucleotides in the sense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, or nineteen.
在某些实施方案中,所述反义链中的修饰核苷酸的个数为一个、两个、三个、四个、五个、六个、七个、八个、九个、十个、十一个、十二个、十三个、十四个、十五个、十六个、十七个、十八个、十九个、二十个或二十一个。In certain embodiments, the number of modified nucleotides in the antisense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty or twenty-one.
在某些实施方案中,所述正义链和所述反义链中的全部的核苷酸为修饰的核苷酸。In certain embodiments, all of the nucleotides in the sense strand and the antisense strand are modified nucleotides.
在某些实施方案中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,其余位置为2’-甲氧基修饰的核苷酸。In certain embodiments, in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
在另一些实施方案中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,所述反义链的5’末端的磷酸基团被VP取代,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,其余位置为2’-甲氧基修饰的核苷酸。In other embodiments, in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the phosphate group at the 5' end of the antisense strand is replaced by VP, and the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
在又一些实施方式中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,反义链的第6位为SAFE-01,其余位置为2’-甲氧基修饰的核苷酸。In some other embodiments, from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 14 and 16 of the antisense strand, the 6th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy-modified nucleotides.
在又一些实施方式中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,反义链的第7位为SAFE-01,其余位置为2’-甲氧基修饰的核苷酸。In some other embodiments, from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, the 7th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy-modified nucleotides.
在又一些实施方式中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,所述反义链的5’末端的磷酸基团被VP取代,2’-氟 代修饰的核苷酸位于反义链的第2、14和16位,反义链的第6位为SAFE-01,其余位置为2’-甲氧基修饰的核苷酸。In some other embodiments, the 2'-fluoro modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy modified nucleotides; in the 5' to 3' direction, the phosphate group at the 5' end of the antisense strand is replaced by VP, and the 2'-fluoro The 2'-methoxy modified nucleotides are located at positions 2, 14, and 16 of the antisense strand, the 6th position of the antisense strand is SAFE-01, and the remaining positions are 2'-methoxy modified nucleotides.
在又一些实施方式中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、9和11位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,其余位置为2’-甲氧基修饰的核苷酸。In some other embodiments, in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at the 7th, 9th and 11th positions of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at the 2nd, 14th and 16th positions of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
在上述各类实施方式中,进一步地,所述siRNA中以下核苷酸之间的连接中至少一个为硫代磷酸酯基连接:In the above various embodiments, further, at least one of the following connections between nucleotides in the siRNA is a phosphorothioate connection:
所述正义链的5’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 5' end of the sense strand;
所述正义链的5’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 5' end of the sense strand;
所述正义链的3’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 3' end of the sense strand;
所述正义链的3’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 3' end of the sense strand;
所述反义链的5’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 5' end of the antisense strand;
所述反义链的5’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 5' end of the antisense strand;
所述反义链的3’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 3' end of the antisense strand;
所述反义链的3’端第2个核苷酸和第3个核苷酸之间的连接。The connection between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
进一步地,按照5’到3’的方向,所述正义链包含位于如下所示位置处的硫代磷酸酯基:Further, in the 5' to 3' direction, the sense strand comprises a phosphorothioate group located at the following positions:
所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;
所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the sense strand;
所述正义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the sense strand;
所述正义链3’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 3' end of the sense strand;
或者,or,
所述正义链包含位于如下所示位置处的硫代磷酸酯基:The sense strand contains phosphorothioate groups located at the positions shown below:
所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the sense strand;
所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间。The positive strand is located between the second and third nucleotides starting from the 5' end.
进一步地,按照5’到3’的方向,所述反义链包含位于如下所示位置处的硫代磷酸酯基:Further, in the 5' to 3' direction, the antisense strand comprises a phosphorothioate group located at the following position:
所述反义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 5' end of the antisense strand;
所述反义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second nucleotide and the third nucleotide starting from the 5' end of the antisense strand;
所述反义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first nucleotide and the second nucleotide starting from the 3' end of the antisense strand;
所述反义链3’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting from the 3' end of the antisense strand.
在某些实施方案中,所述siRNA选自表1或表2中的siRNA。In certain embodiments, the siRNA is selected from the siRNAs in Table 1 or Table 2.
本发明第二方面提供一种siRNA缀合物,其包括上述siRNA中的一条或多条,以及缀合至所述siRNA的任意位置的一个或多个缀合基团。The second aspect of the present invention provides a siRNA conjugate, which comprises one or more of the above-mentioned siRNAs, and one or more conjugated groups conjugated to any position of the siRNA.
根据某些实施方式,所述siRNA的任意位置连接两个、三个或四个连续连接的所述缀合基团。According to certain embodiments, two, three or four consecutively linked conjugated groups are linked to any position of the siRNA.
根据某些实施方式,所述缀合基团连接在所述正义链的3’末端和/或5’末端。According to certain embodiments, the conjugate group is attached to the 3' end and/or the 5' end of the sense strand.
根据某些实施方式,所述siRNA缀合物具有以下结构中的任一种:



According to certain embodiments, the siRNA conjugate has any one of the following structures:



本发明的siRNA与N-乙酰半乳糖胺残基偶联,通过去唾液酸糖蛋白受体介导肝细胞特异性摄取,可以维持较长时间的半衰期,从而延长药效时间。The siRNA of the present invention is coupled with N-acetylgalactosamine residues and is specifically taken up by liver cells through asialoglycoprotein receptors, so that a relatively long half-life can be maintained, thereby prolonging the drug effect time.
根据某些实施方式,所述siRNA缀合物选自表6、表9、表11、表12、表13、表14或表15所示的siRNA缀合物。According to certain embodiments, the siRNA conjugate is selected from the siRNA conjugates shown in Table 6, Table 9, Table 11, Table 12, Table 13, Table 14 or Table 15.
本发明第三方面提供一种药物组合物,其包括上述siRNA或上述siRNA缀合物,以及药学上可接受的载体或辅料。The third aspect of the present invention provides a pharmaceutical composition, which includes the above-mentioned siRNA or the above-mentioned siRNA conjugate, and a pharmaceutically acceptable carrier or excipient.
在某些实施方案中,所述药物组合物用于调节补体C5的表达。In certain embodiments, the pharmaceutical composition is used to modulate the expression of complement C5.
本发明第四方面提供上述siRNA,或上述siRNA缀合物,或上述药物组合物用于制备调节补体C5表达的药剂的用途。 The fourth aspect of the present invention provides use of the above siRNA, or the above siRNA conjugate, or the above pharmaceutical composition for preparing a medicament for regulating complement C5 expression.
本发明第五方面提供上述siRNA,或上述siRNA缀合物,或上述药物组合物用于制备治疗和/或预防补体C5的表达相关疾病的药剂的用途。The fifth aspect of the present invention provides use of the above siRNA, or the above siRNA conjugate, or the above pharmaceutical composition for preparing a medicament for treating and/or preventing diseases related to the expression of complement C5.
根据某些实施方式,所述疾病包括阵发性夜间血红蛋白尿、非典型溶血性尿毒综合征、老年性黄斑变性、重症肌无力、IgA肾炎、视神经脊髓炎和C3肾小球疾病。According to certain embodiments, the diseases include paroxysmal nocturnal hemoglobinuria, atypical hemolytic uremic syndrome, age-related macular degeneration, myasthenia gravis, IgA nephritis, neuromyelitis optica, and C3 glomerular disease.
本发明第六方面提供一种调节补体C5表达的方法,包括将治疗有效量的本发明的siRNA,或本发明的siRNA缀合物,或本发明的药物组合物与表达C5的细胞接触或给予有需要的受试者。The sixth aspect of the present invention provides a method for regulating complement C5 expression, comprising contacting a therapeutically effective amount of the siRNA of the present invention, or the siRNA conjugate of the present invention, or the pharmaceutical composition of the present invention with cells expressing C5 or administering it to a subject in need thereof.
本发明还提供了一种治疗和/或预防补体C5表达相关联的疾病的方法,包括将治疗有效量的本发明的siRNA,或本发明的siRNA缀合物,或本发明的药物组合物给予有需要的受试者。The present invention also provides a method for treating and/or preventing diseases associated with complement C5 expression, comprising administering a therapeutically effective amount of the siRNA of the present invention, or the siRNA conjugate of the present invention, or the pharmaceutical composition of the present invention to a subject in need thereof.
由于上述技术方案运用,本发明与现有技术相比具有下列优点:Due to the application of the above technical solution, the present invention has the following advantages compared with the prior art:
本发明提供的siRNA、siRNA缀合物和药物组合物在细胞实验和动物实验中显示出优异的补体C5表达抑制活性,具有良好的治疗补体C5表达相关联的疾病的潜力。例如,本发明的siRNA、siRNA缀合物和药物组合物组织特异性好,安全性高;药效持续时间长,皮下给药,用药依从性高;与现有同类型的药物相比,药效和安全性都有很大的提升。The siRNA, siRNA conjugate and pharmaceutical composition provided by the present invention show excellent complement C5 expression inhibition activity in cell experiments and animal experiments, and have good potential for treating diseases associated with complement C5 expression. For example, the siRNA, siRNA conjugate and pharmaceutical composition of the present invention have good tissue specificity and high safety; long duration of efficacy, subcutaneous administration, and high medication compliance; compared with existing drugs of the same type, both efficacy and safety are greatly improved.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
图1为实施例5中使用受试缀合物后,小鼠肝脏中C5 mRNA的剩余表达水平;Figure 1 shows the remaining expression level of C5 mRNA in mouse liver after using the test conjugate in Example 5;
图2为实施例6中使用受试缀合物后,大鼠肝脏中C5 mRNA的剩余表达水平;FIG2 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 6;
图3为实施例9中使用受试缀合物后,小鼠肝脏中C5 mRNA的剩余表达水平;FIG3 shows the remaining expression level of C5 mRNA in mouse liver after using the test conjugate in Example 9;
图4为实施例10中使用受试缀合物后,大鼠肝脏中C5 mRNA的剩余表达水平;FIG4 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 10;
图5为实施例11中使用受试缀合物后,大鼠肝脏中C5 mRNA的剩余表达水平;FIG5 shows the remaining expression level of C5 mRNA in rat liver after using the test conjugate in Example 11;
图6为实施例12中使用受试缀合物后,食蟹猴体内C5 mRNA的剩余表达水平;Figure 6 shows the remaining expression level of C5 mRNA in cynomolgus monkeys after using the test conjugate in Example 12;
图7为实施例14中使用受试缀合物后,食蟹猴体内C5 mRNA的剩余表达水平。Figure 7 shows the remaining expression level of C5 mRNA in crab-eating monkeys after using the test conjugate in Example 14.
具体实施方式DETAILED DESCRIPTION
需要说明的是,除非另外定义,本申请使用的技术术语或者科学术语应当为所属领域的技术人员所理解的通常意义。It should be noted that, unless otherwise defined, the technical terms or scientific terms used in this application should have the common meanings understood by technicians in the relevant field.
下述实施例中的实验方法,如无特殊说明,均为常规方法。下述实施例中所用的原料、试剂材料等,如无特殊说明,均为市售产品。The experimental methods in the following examples are conventional methods unless otherwise specified. The raw materials, reagents, etc. used in the following examples are commercially available products unless otherwise specified.
定义definition
在上文及下文中,如无特别说明,大写字母A、C、G、U分别表示腺苷-3'-磷酸、胞苷-3'-磷酸、鸟苷-3'-磷酸、尿苷-3'-磷酸;小写字母m表示该字母m左侧相邻的一个核苷酸为2’-甲氧基修饰的核苷酸;小写字母f表示该字母f左侧相邻的一个核苷酸为2’-氟代修饰的核苷酸;小写字母s在大写字母中间表示s左右相邻的两个核苷酸之间为硫代磷酸酯基链接;s在3’端第一个时表示与该字母s左侧相邻的一个核苷酸末端为硫代磷酸酯基;s在5’端第一个时表示与该字母s右侧相邻的一个核苷酸末端为硫代磷酸酯基;s在两个缀合分子之间时表示两个缀合分子之间为硫代磷酸酯基链接。大写字母P表示该字母P右侧相邻的一个核苷酸为5'-磷酸核苷酸;字母组合VP表示该字母组合VP右侧相邻的一个核苷酸为乙烯基磷酸酯(5'-(E)-vinylphosphonate,E-VP)修饰的核苷酸;dT为脱氧胸腺苷酸。L96表示N-[三(GalNAc-烷基)-酰胺癸酰基]-4-羟基脯氨醇-(GalNAc-烷基);SA20表示N-(GalNAc-烷酰基)-4-羟基脯氨醇(具体结构及合成参见US2022/0008541A1)。In the above and below, unless otherwise specified, capital letters A, C, G, and U represent adenosine-3'-phosphate, cytidine-3'-phosphate, guanosine-3'-phosphate, and uridine-3'-phosphate, respectively; a lowercase letter m indicates that the nucleotide adjacent to the left of the letter m is a 2'-methoxy-modified nucleotide; a lowercase letter f indicates that the nucleotide adjacent to the left of the letter f is a 2'-fluoro-modified nucleotide; a lowercase letter s in the middle of a capital letter indicates that the two nucleotides adjacent to the left and right of s are linked by a thiophosphate group; when s is the first at the 3' end, it indicates that the terminal of a nucleotide adjacent to the left of the letter s is a thiophosphate group; when s is the first at the 5' end, it indicates that the terminal of a nucleotide adjacent to the right of the letter s is a thiophosphate group; when s is between two conjugated molecules, it indicates that the two conjugated molecules are linked by a thiophosphate group. The capital letter P indicates that the nucleotide adjacent to the right of the letter P is a 5'-phosphate nucleotide; the letter combination VP indicates that the nucleotide adjacent to the right of the letter combination VP is a nucleotide modified with vinyl phosphate (5'-(E)-vinylphosphonate, E-VP); dT is deoxythymidine. L96 represents N-[tri(GalNAc-alkyl)-amide decanoyl]-4-hydroxyprolinol-(GalNAc-alkyl); SA20 represents N-(GalNAc-alkanoyl)-4-hydroxyprolinol (for specific structure and synthesis, see US2022/0008541A1).
在上文及下文中,2’-甲氧基修饰的核苷酸指核苷酸的核糖基2'位的羟基被甲氧基取代形成的核苷酸;同理,2’-氟代修饰的核苷酸、2’-O-CH2-CH2-O-CH3修饰的核苷酸、2’-O-CH2-CH=CH2修饰的核苷酸、2’-CH2-CH2-CH=CH2修饰的核苷酸、2’-脱氧基核苷酸、2’‐甲氧基乙基修饰的核苷酸分别是指核苷酸的核糖基2'位的羟基被相应基团取代所形成的核苷酸。In the above and below, 2'-methoxy-modified nucleotide refers to a nucleotide in which the hydroxyl group at the 2'-ribose group of the nucleotide is replaced by a methoxy group; similarly, 2'-fluoro-modified nucleotide, 2'-O-CH 2 -CH 2 -O-CH 3 -modified nucleotide, 2'-O-CH 2 -CH=CH 2 -modified nucleotide, 2'-CH 2 -CH 2 -CH=CH 2 -modified nucleotide, 2'-deoxy nucleotide, and 2'-methoxyethyl-modified nucleotide refer to nucleotides in which the hydroxyl group at the 2'-ribose group of the nucleotide is replaced by the corresponding group.
LNA如式(1)所示,ENA如式(2)所示,cET BNA如式(3)所示,UNA如式(4)所示,GNA如式(5)所示,SAFE-01如式(6)所示:
LNA is shown in formula (1), ENA is shown in formula (2), cET BNA is shown in formula (3), UNA is shown in formula (4), GNA is shown in formula (5), and SAFE-01 is shown in formula (6):
上述式(1)至式(6)中,Base表示天然核碱基、修饰的核碱基、通用碱基,例如A、U、G或C。上述式(4)至式(5)中,R选自H、OH或烷氧基(O-烷基)。式(6)中R1为H、OH或CH3。根据一些实施方式,R1为H。根据一些实施方式,R1为OH。根据一些实施方式,R1为CH3In the above formulae (1) to (6), Base represents a natural nucleobase, a modified nucleobase, a universal base, such as A, U, G or C. In the above formulae (4) to (5), R is selected from H, OH or alkoxy (O-alkyl). In formula (6), R1 is H, OH or CH 3 . According to some embodiments, R1 is H. According to some embodiments, R1 is OH. According to some embodiments, R1 is CH 3 .
在上文及下文中,特别是在描述本公开的siRNA、药物组合物或siRNA缀合物的制备方法时,除非特别说明,所述核苷单体指,根据欲制备的siRNA或siRNA缀合物中核苷酸的种类和顺序,固相亚磷酰胺合成中使用的修饰或未修饰的核苷亚磷酰胺单体。固相亚磷酰胺合成为本领域技术人员所公知的RNA合成中所用的方法。本公开所用的核苷单体均可商购得到。In the above and below, especially when describing the preparation method of the siRNA, pharmaceutical composition or siRNA conjugate of the present disclosure, unless otherwise specified, the nucleoside monomer refers to the modified or unmodified nucleoside phosphoramidite monomer used in the solid phase phosphoramidite synthesis according to the type and order of nucleotides in the siRNA or siRNA conjugate to be prepared. Solid phase phosphoramidite synthesis is a method used in RNA synthesis known to those skilled in the art. The nucleoside monomers used in the present disclosure are all commercially available.
在本公开的上下文中,除非另有说明,“缀合”是指两个或多个各自具有特定功能的化学部分之间以共价连接的方式彼此连接;相应地,“缀合物”是指该各个化学部分之间通过共价连接而形成的化合物。进一步地,“siRNA缀合物”表示一个或多个具有特定功能的化学部分共价连接至siRNA上而形成的化合物。siRNA缀合物应根据上下文,理解为多个siRNA缀合物的总称或者某个化学式所示的siRNA缀合物。在本公开的上下文中,“缀合分子”应当理解为可通过反应缀合至siRNA,最终形成本公开的siRNA缀合物的特定化合物。In the context of the present disclosure, unless otherwise specified, "conjugation" refers to the connection between two or more chemical moieties, each having a specific function, in a covalently linked manner; accordingly, "conjugate" refers to a compound formed by covalently linking the chemical moieties. Further, "siRNA conjugate" means a compound formed by covalently linking one or more chemical moieties having a specific function to siRNA. Depending on the context, siRNA conjugates should be understood as a general term for multiple siRNA conjugates or an siRNA conjugate shown by a certain chemical formula. In the context of the present disclosure, "conjugated molecule" should be understood as a specific compound that can be conjugated to siRNA through a reaction to ultimately form the siRNA conjugate of the present disclosure.
在本公开中可以使用各种羟基保护基团。一般来说,保护基团使化学官能团对特定的反应条件不敏感,并且可以在分子中的该官能团添加以及去除,而不实质上损害分子的其余部分。代表性的羟基保护基团公开于Beaucage等人,Tetrahedron 1992,48,2223-2311,以及Greeneand Wuts,Protective Groups in Organic Synthesis,Chapter 2,2d ed,John Wiley&Sons,New York,1991中,以引用的方式将上述文献各自整体并入本文。在一些实施方式中,保护基团在碱性条件下稳定,但可以在酸性条件下脱除。在一些实施方式中,本文可使用的羟基保护基的非排他性实例包括二甲氧基三苯甲基(DMT)、单甲氧基三苯甲基、9-苯基氧杂蒽-9-基(Pixyl)和9-(对甲氧基苯基)氧杂蒽-9-基(Mox)。在一些实施方式中,本文可使用的羟基保护基的非排他性实例包括Tr(三苯甲基)、MMTr(4-甲氧基三苯甲基)、DMTr(4,4'-二甲氧基三苯甲基)和TMTr(4,4',4”-三甲氧基三苯甲基)。Various hydroxyl protecting groups can be used in the present disclosure. In general, the protecting group makes the chemical functional group insensitive to specific reaction conditions, and the functional group in the molecule can be added and removed without substantially damaging the rest of the molecule. Representative hydroxyl protecting groups are disclosed in Beaucage et al., Tetrahedron 1992, 48, 2223-2311, and Greene and Wuts, Protective Groups in Organic Synthesis, Chapter 2, 2d ed, John Wiley & Sons, New York, 1991, each of which is incorporated herein by reference in its entirety. In some embodiments, the protecting group is stable under alkaline conditions, but can be removed under acidic conditions. In some embodiments, non-exclusive examples of hydroxyl protecting groups that can be used herein include dimethoxytrityl (DMT), monomethoxytrityl, 9-phenyloxanthene-9-yl (Pixyl) and 9-(p-methoxyphenyl)oxanthene-9-yl (Mox). In some embodiments, non-exclusive examples of hydroxy protecting groups that may be used herein include Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-dimethoxytrityl), and TMTr (4,4',4"-trimethoxytrityl).
本公开中所述的药学上可接受的载体可以是siRNA给药领域常规使用的载体,例如但不限于磁性纳米粒(magnetic nanoparticles,如基于Fe3O4或Fe2O3的纳米粒)、碳纳米管(carbon nanotubes)、介孔硅(mesoporous silicon)、磷酸钙纳米粒(calcium phosphate nanoparticles)、聚乙烯亚胺(polyethylenimine,PEI)、聚酰胺型树形高分子(polyamidoamine(PAMAM)dendrimer)、聚赖氨酸(poly(L-lysine),PLL)、壳聚糖(chitosan)、1,2-二油酰基-3-三甲铵丙烷(1,2-dioleoyl-3-trimethylammonium-propane,DOTAP)、聚D型或L型乳酸/羟基乙酸共聚物(poly(D&L-lactic/glycolic acid)copolymer,PLGA)、聚(氨乙基乙撑磷酸酯)(poly(2-aminoethyl ethylene phosphate),PPEEA)和聚(甲基丙烯酸-N,N-二甲氨基乙酯)(poly(2-dimethylaminoethyl methacrylate),PDMAEMA)以及它们的衍生物中的一种或多种。辅料可以为本领域常规采用的各种制剂或化合物的一种或多种。例如,所述药学上可接受的其它辅料可以包括pH缓冲液、保护剂和渗透压调节剂中的至少一种。The pharmaceutically acceptable carrier described in the present disclosure can be a carrier conventionally used in the field of siRNA administration, such as but not limited to magnetic nanoparticles (such as nanoparticles based on Fe3O4 or Fe2O3), carbon nanotubes, mesoporous silicon, calcium phosphate nanoparticles, polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, poly(L-lysine), PLL, chitosan (c hitosan), 1,2-dioleoyl-3-trimethylammonium-propane (1,2-dioleoyl-3-trimethylammonium-propane, DOTAP), poly D- or L-lactic/glycolic acid copolymer (poly(D&L-lactic/glycolic acid) copolymer, PLGA), poly(aminoethyl ethylene phosphate) (poly(2-aminoethyl ethylene phosphate), PPEEA) and poly(methacrylate-N,N-dimethylaminoethyl ester) (poly(2-dimethylaminoethyl methacrylate), PDMAEMA) and their derivatives. One or more of the excipients can be one or more of various preparations or compounds conventionally used in the art. For example, the other pharmaceutically acceptable excipients can include at least one of a pH buffer, a protective agent and an osmotic pressure regulator.
如本说明书所使用的,“任选的”或“任选地”是指其后描述的事件或状况可以发生或不发生,并且所述描述包括事件或状况发生的情况和其中不发生的情况。As used herein, "optional" or "optionally" means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where the event or circumstance occurs and instances where it does not.
“受试者”一词,如本文所使用的,指任何动物,例如哺乳动物或有袋动物。本公开的受试者包括但不限于人类、非人灵长类(例如,恒河猴或其他类型的猕猴)、小鼠、猪、马、驴、牛、兔、绵羊、大鼠和任何种类的家禽。 The term "subject", as used herein, refers to any animal, such as a mammal or marsupial. Subjects of the present disclosure include, but are not limited to, humans, non-human primates (e.g., rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cows, rabbits, sheep, rats, and poultry of any kind.
如本文所使用的,“治疗”指的是获得有益的或期望的结果的方法,包括但不限于治疗益处。“治疗益处”意味着根除或改善被治疗的潜在障碍。此外,治疗益处通过根除或改善与潜在障碍相关的一个或多个生理症状,从而在受试者中观察到改善而获得,尽管受试者可能仍然受到潜在障碍的折磨。As used herein, "treatment" refers to an approach to obtaining beneficial or desired results, including but not limited to a therapeutic benefit. "Therapeutic benefit" means eradication or amelioration of the underlying disorder being treated. In addition, a therapeutic benefit is obtained by eradication or amelioration of one or more physiological symptoms associated with the underlying disorder, such that an improvement is observed in the subject, although the subject may still be afflicted with the underlying disorder.
如本文所使用的“预防”指获得有益或期望的结果的方法,包括但不限于预防性益处。为了获得“预防性益处”,可将siRNA、siRNA缀合物或药物组合物给予有罹患特定疾病风险的受试者,或给予报告疾病的一种或多种生理症状的受试者,即便可能该疾病的诊断尚未作出。As used herein, "prevention" refers to an approach to obtaining beneficial or desired results, including but not limited to a prophylactic benefit. To obtain a "prophylactic benefit," siRNA, siRNA conjugate, or pharmaceutical composition can be administered to a subject at risk for a particular disease, or to a subject reporting one or more physiological symptoms of a disease, even though a diagnosis of the disease may not have been made.
siRNA与缀合基团的缀合位点可以在siRNA正义链的3'端或5'端,也可在反义链的3'端或5'端,还可以在siRNA的内部序列中。在一些实施方式中,所述siRNA与缀合基团的缀合位点在siRNA正义链的3'末端。The conjugation site of siRNA and conjugation group can be at the 3' end or 5' end of the siRNA sense strand, at the 3' end or 5' end of the antisense strand, or in the internal sequence of siRNA. In some embodiments, the conjugation site of siRNA and conjugation group is at the 3' end of the siRNA sense strand.
在一些实施方式中,所述缀合基团可以连接在核苷酸的磷酸基团、2'-位羟基或者碱基上。在一些实施方式中,所述缀合基团还可以连接在3'-位羟基上,此时核苷酸之间采用2'-5'磷酸二酯键连接。当缀合基团连接在siRNA链的末端时,所述缀合基团通常连接在核苷酸的磷酸基团上;当缀合基团连接在siRNA的内部序列时,所述缀合基团通常连接在核糖糖环或者碱基上。各种连接方式可以参考文献:Muthiah Manoharan et.al.siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes.ACS Chemical biology,2015,10(5):1181-7。In some embodiments, the conjugated group can be connected to the phosphate group, 2'-hydroxyl group or base of the nucleotide. In some embodiments, the conjugated group can also be connected to the 3'-hydroxyl group, in which case the nucleotides are connected by a 2'-5' phosphodiester bond. When the conjugated group is connected to the end of the siRNA chain, the conjugated group is usually connected to the phosphate group of the nucleotide; when the conjugated group is connected to the internal sequence of the siRNA, the conjugated group is usually connected to the ribose sugar ring or the base. Various connection methods can be referred to in the literature: Muthiah Manoharan et.al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5): 1181-7.
在一些实施方式中,所述siRNA与缀合基团间可以通过酸不稳定的、或可还原的化学键相连,在细胞内涵体的酸性环境下,这些化学键可降解,从而使siRNA成为自由状态。对于不可降解的缀合方式,缀合基团可连接在siRNA的正义链,从而尽量降低缀合对siRNA活性的影响。In some embodiments, the siRNA and the conjugated group can be connected by acid-labile or reducible chemical bonds, which can be degraded in the acidic environment of the cell endosome, thereby making the siRNA free. For non-degradable conjugation methods, the conjugated group can be connected to the sense strand of the siRNA, thereby minimizing the effect of conjugation on the activity of the siRNA.
在一些实施方式中,多个缀合基团间可以采用磷酸基团或者硫代磷酸基团连接。In some embodiments, multiple conjugated groups can be linked using phosphate groups or thiophosphate groups.
在一些实施方式中,所述药学上可接受的靶向基团可以是siRNA给药领域常规使用的配体,例如WO2009082607A2中描述的各种配体,以引用的方式全文纳入本说明书。In some embodiments, the pharmaceutically acceptable targeting group may be a ligand conventionally used in the field of siRNA administration, such as various ligands described in WO2009082607A2, which is incorporated herein by reference in its entirety.
本文中,SD.表示标准差,AVG表示平均值。In this article, SD. means standard deviation and AVG means average.
下面结合具体的实施例对本发明提供的技术方案做进一步的描述。下述实施例仅用于对本发明进行说明,并不会对本发明的保护范围进行限制。The technical solution provided by the present invention is further described below in conjunction with specific embodiments. The following embodiments are only used to illustrate the present invention and will not limit the protection scope of the present invention.
实施例1 siRNA的设计和合成Example 1 Design and synthesis of siRNA
本文中,若实际的来源未具体给出,则该试剂可自任意分子生物学试剂的供应商以用于分子生物学应用的质量/纯度而获得。Herein, if the actual source is not specifically given, the reagent can be obtained from any supplier of molecular biology reagents in a quality/purity suitable for molecular biology applications.
1)siRNA设计,以人C5(NM_001735.3)为靶基因,以满足活性siRNA的一般规则设计19/21nt的siRNA。未经修饰的正义链及反义链序列的详细列表见如下表1,经过修饰的正义链及反义链序列的详细列表见如下表2。1) siRNA design, human C5 (NM_001735.3) was used as the target gene, and 19/21nt siRNA was designed to meet the general rules of active siRNA. The detailed list of unmodified sense and antisense strand sequences is shown in Table 1 below, and the detailed list of modified sense and antisense strand sequences is shown in Table 2 below.
2)siRNA合成,使用固体支撑物介导的亚磷酰胺化学于Dr.Oligo48合成器(Biolytic)上,以200纳摩尔(nmol)规格合成C5siRNA序列。该固体支撑物是通用固体支撑物(深圳逗点生物)。核苷单体原料2’-F RNA、2’-O-甲基RNA等核苷亚磷酰胺单体购自上海兆维或苏州吉玛。全部亚磷酰胺(50mM乙腈溶液)的偶合时间是6分钟(min),采用5-乙基硫-1H-四唑(ETT)作为活化剂(0.6M乙腈溶液),使用0.22M的二硫化二苯乙酰(PADS)溶于1:1体积比的乙腈和三甲基吡啶(苏州柯乐玛)溶液作为硫化试剂,硫化反应时间是3分钟(min),使用碘吡啶/水溶液(柯乐玛)作为氧化剂,氧化反应时间2分钟(min)。2) siRNA synthesis, using solid support-mediated phosphoramidite chemistry on a Dr.Oligo48 synthesizer (Biolytic), the C5siRNA sequence was synthesized at a specification of 200 nanomoles (nmol). The solid support was a universal solid support (Shenzhen Comma Biotech). Nucleoside monomer raw materials 2'-F RNA, 2'-O-methyl RNA and other nucleoside phosphoramidite monomers were purchased from Shanghai Zhaowei or Suzhou Jima. The coupling time of all phosphoramidites (50mM acetonitrile solution) was 6 minutes (min), 5-ethylthio-1H-tetrazole (ETT) was used as an activator (0.6M acetonitrile solution), 0.22M phenylacetyl disulfide (PADS) dissolved in a 1:1 volume ratio of acetonitrile and trimethylpyridine (Suzhou Kelema) solution was used as a sulfurization reagent, the sulfurization reaction time was 3 minutes (min), and iodine pyridine/water solution (Kelema) was used as an oxidant, and the oxidation reaction time was 2 minutes (min).
固相合成完成后,寡核糖核苷酸自该固体支撑物裂解,采用3:1的28%氨水和乙醇溶液在50℃条件下浸泡16小时。然后高速离心,将上清液转移到另一个离心管中,浓缩蒸发干后,使用C18反向色谱纯化,流动相为0.1M三乙胺乙酸盐(TEAA)和乙腈,并使用3%三氟乙酸溶液脱出4,4'-二甲氧基三苯甲基(DMTr)。目标寡核苷酸收集后冻干,并经LC-MS鉴定为目标产物,再经过UV(260nm)定量。After solid phase synthesis, the oligoribonucleotides were cleaved from the solid support and soaked in a 3:1 28% ammonia and ethanol solution at 50°C for 16 hours. Then, the supernatant was transferred to another centrifuge tube by high-speed centrifugation, concentrated and evaporated to dryness, and purified by C18 reverse chromatography with a mobile phase of 0.1M triethylamine acetate (TEAA) and acetonitrile, and 4,4'-dimethoxytrityl (DMTr) was removed using a 3% trifluoroacetic acid solution. The target oligonucleotides were collected and freeze-dried, identified as the target product by LC-MS, and then quantified by UV (260nm).
所得到的单链寡核苷酸,根据等摩尔比,按照互补配对的两条序列,进行退火,最后所得到的双链siRNA溶于1X PBS中,并调整至实验所需浓度。The single-stranded oligonucleotides obtained were annealed according to an equimolar ratio and two complementary paired sequences. The final double-stranded siRNA was dissolved in 1X PBS and adjusted to the required concentration for the experiment.
表1

Table 1

表2






Table 2






实施例2 siRNA对Hep3B细胞中人补体C5的抑制,单浓度点抑制活性筛选Example 2 siRNA inhibition of human complement C5 in Hep3B cells, single concentration point inhibitory activity screening
在体外测试靶向C5的siRNA对C5 mRNA表达水平的影响。Hep3B细胞培养于含10%胎牛血清的DMEM高糖培养基中,在37℃,5%CO2条件下培养。转染时,将Hep3B细胞接种于96孔板,接种密度为每孔2万个细胞,每孔100μL培养基。The effect of siRNA targeting C5 on the expression level of C5 mRNA was tested in vitro. Hep3B cells were cultured in DMEM high glucose medium containing 10% fetal bovine serum at 37°C and 5% CO 2. During transfection, Hep3B cells were seeded in 96-well plates at a seeding density of 20,000 cells per well with 100 μL of culture medium per well.
参照产品说明手册,使用Lipofectamine RNAiMAX(ThermoFisher,13778150)转染siRNA,siRNA转染的终浓度为10nM。在处理24小时后,使用细胞RNA提取试剂盒(志昂生物,MNTR/FX96)从细胞中分离RNA,按照标准流程,采用逆转录试剂盒(Takara PrimeScriptTM II 1st Strand cDNA Synthesis Kit,6210A)进行反转录,并以qPCR反应试剂盒(Vazyme,Q711)进行定量实时PCR检测,测定C5的mRNA水平,根据GAPDH内参基因水平对C5的mRNA水平进行校正。According to the product manual, siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150), and the final concentration of siRNA transfection was 10 nM. After 24 hours of treatment, RNA was isolated from cells using a cell RNA extraction kit (Zhiang Bio, MNTR/FX96), and reverse transcription was performed using a reverse transcription kit (Takara PrimeScript TM II 1st Strand cDNA Synthesis Kit, 6210A) according to standard procedures, and quantitative real-time PCR was performed using a qPCR reaction kit (Vazyme, Q711) to determine the mRNA level of C5, and the mRNA level of C5 was corrected according to the level of the GAPDH internal reference gene.
C5的引物:Primers for C5:
正向引物:ATCAGGCCAGGGAAGGTTAC(SEQ ID NO:153);Forward primer: ATCAGGCCAGGGAAGGTTAC (SEQ ID NO: 153);
反向引物:TCGGGATGAAGGAACCATGT(SEQ ID NO:154);Reverse primer: TCGGGATGAAGGAACCATGT (SEQ ID NO: 154);
GAPDH的引物:Primers for GAPDH:
正向引物:GGTCGGAGTCAACGGATTT(SEQ ID NO:155);Forward primer: GGTCGGAGTCAACGGATTT (SEQ ID NO: 155);
反向引物:CCAGCATCGCCCCACTTGA(SEQ ID NO:156);Reverse primer: CCAGCATCGCCCCACTTGA (SEQ ID NO: 156);
结果以相对于未经过siRNA处理的细胞C5 mRNA表达(其为100%)的剩余百分比来表示,剩余百分比越小,代表siRNA的抑制活性越高,结果见表3。The results are expressed as the remaining percentage relative to the C5 mRNA expression of cells not treated with siRNA (which is 100%). The smaller the remaining percentage, the higher the inhibitory activity of siRNA. The results are shown in Table 3.
表3


Table 3


实施例3 siRNA对Hep3B细胞中人C5的抑制,双浓度点活性Example 3 siRNA inhibition of human C5 in Hep3B cells, double concentration point activity
在Hep3B细胞中采用2个浓度(10nM、0.1nM)对表3中表现出65%或更高的体外抑制的多条siRNA进行筛选。Multiple siRNAs in Table 3 that showed 65% or higher in vitro inhibition were screened at two concentrations (10 nM, 0.1 nM) in Hep3B cells.
Hep3B细胞培养于含10%胎牛血清的DMEM高糖培养基中,在37℃,5%CO2条件下培养。转染前24h,将Hep3B细胞接种于96孔板,接种密度为每孔1万个细胞,每孔100μL培养基。Hep3B cells were cultured in DMEM high-glucose medium containing 10% fetal bovine serum at 37°C and 5% CO 2. 24 h before transfection, Hep3B cells were seeded in 96-well plates at a seeding density of 10,000 cells per well with 100 μL of culture medium per well.
参照产品说明手册,使用Lipofectamine RNAiMAX(ThermoFisher,13778150)转染siRNA,siRNA转染的终浓度为10nM和1nM。在处理24小时后,按照与实施例2相同的方法测定C5的mRNA水平。Referring to the product manual, siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150) at a final concentration of 10 nM and 1 nM. After 24 hours of treatment, the mRNA level of C5 was determined in the same manner as in Example 2.
结果以相对于未经过siRNA处理的细胞的C5 mRNA表达(其为100%)的剩余百分比来表示,结果见表4。The results are expressed as the remaining percentage of C5 mRNA expression relative to cells not treated with siRNA (which is 100%), and the results are shown in Table 4.
表4


Table 4


实施例4缀合物制备Example 4 Conjugate Preparation
通过固相亚磷酰胺法,利用所需的缀合分子起始循环,按照核苷酸排布顺序自3’-5’方向逐一连接核苷单体。每连接一个核苷单体都包括脱保护、偶联、盖帽、氧化或硫化四步反应。正义链和反义链采用相同的合成条件。Through the solid phase phosphoramidite method, the desired conjugated molecule is used to start the cycle, and the nucleoside monomers are connected one by one from the 3'-5' direction according to the nucleotide arrangement order. Each connection of a nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or sulfurization. The same synthesis conditions are used for the sense chain and the antisense chain.
仪器设备型号:Biolytic Dr.Oligo 48固相合成仪,逗点生物Embed CPG Frits通用合成柱DS0200,逗点生物96孔板脱盐柱DC189650(80mg),合成siRNA缀合物使用的试剂见表5。Instrument model: Biolytic Dr. Oligo 48 solid phase synthesizer, Biocomma Embed CPG Frits universal synthesis column DS0200, Biocomma 96-well plate desalting column DC189650 (80 mg). The reagents used to synthesize siRNA conjugates are shown in Table 5.
表5
Table 5
合成条件给定如下:The synthesis conditions are given as follows:
核苷单体以0.05M浓度的乙腈溶液提供,每一步的脱保护反应的条件相同,即温度为25℃,反应时间为3分钟,脱保护试剂为DCA,进样体积180μL。The nucleoside monomer was provided in an acetonitrile solution with a concentration of 0.05 M. The conditions of the deprotection reaction in each step were the same, namely, the temperature was 25° C., the reaction time was 3 minutes, the deprotection reagent was DCA, and the injection volume was 180 μL.
每一步偶联反应条件均相同,包括温度为25℃,反应时间为3分钟。核苷单体进样体积90μL,催化剂ACT进样体积110μL。The reaction conditions for each coupling step were the same, including a temperature of 25°C, a reaction time of 3 minutes, a nucleoside monomer injection volume of 90 μL, and a catalyst ACT injection volume of 110 μL.
每一步盖帽条件均相同,包括温度为25℃,反应时间为2分钟。盖帽试剂溶液的摩尔比为1:1的CapA和CapB的混合溶液。盖帽试剂进样体积180μL。The capping conditions were the same in each step, including a temperature of 25°C and a reaction time of 2 minutes. The capping reagent solution was a mixed solution of CapA and CapB at a molar ratio of 1:1. The capping reagent injection volume was 180 μL.
每一步氧化反应条件均相同,包括温度为25℃,反应时间为3分钟,氧化试剂OXD进样体积为180μL。The oxidation reaction conditions were the same in each step, including a temperature of 25°C, a reaction time of 3 minutes, and an injection volume of 180 μL of the oxidation reagent OXD.
每一步硫化反应条件均相同,包括温度为25℃,反应时间为4分钟,硫化试剂为0.05M PADS的吡啶乙腈溶液。硫化试剂进样体积180μL。The reaction conditions for each step of the sulfurization reaction were the same, including a temperature of 25 °C, a reaction time of 4 minutes, and a sulfurization reagent of 0.05 M PADS in pyridine acetonitrile. The injection volume of the sulfurization reagent was 180 μL.
待最后一个核苷单体连接完成后,依次对固相载体上连接的核酸序列进行切割、脱保护、纯化、脱盐,随后冻干获得正义链和反义链,其中After the last nucleoside monomer is connected, the nucleic acid sequence connected to the solid phase carrier is cut, deprotected, purified, desalted, and then freeze-dried to obtain the sense chain and antisense chain.
1切割和脱保护条件如下:将合成的连接有载体的核苷酸序列加入氨水:乙醇=3:1的混合溶液至体积为0.8mL。在50℃反应15h,过滤除去剩余载体,将上清液真空浓缩至干。1. The cleavage and deprotection conditions are as follows: add the synthesized nucleotide sequence connected to the vector to a mixed solution of ammonia water: ethanol = 3:1 to a volume of 0.8 mL. React at 50°C for 15 hours, filter to remove the remaining vector, and vacuum concentrate the supernatant to dryness.
2纯化和脱盐条件如下:利用C18反相色谱柱进行脱盐。具体条件包括:2 Purification and desalting conditions are as follows: Desalting is performed using a C18 reverse phase column. Specific conditions include:
2-1样品的准备2-1 Sample Preparation
向寡核苷酸样品中加入0.1M的TEAA(三乙胺醋酸盐)至体积为0.8mL。0.1 M TEAA (triethylamine acetate) was added to the oligonucleotide sample to a volume of 0.8 mL.
2-2 96孔板的活化2-2 Activation of 96-well plates
活化:0.8mL乙腈通过96孔板的每个孔中进行活化Activation: 0.8 mL of acetonitrile was passed through each well of a 96-well plate for activation
平衡:用0.8mL TEAA(pH 7.0)溶液进行96孔板的平衡Balance: Use 0.8 mL TEAA (pH 7.0) solution to balance the 96-well plate.
2-3纯化过程依次按照如下操作2-3 The purification process is carried out as follows
将0.8mL包含寡核苷酸的溶液通过脱盐柱Pass 0.8 mL of the solution containing the oligonucleotide through the desalting column.
用0.8mL 6.5%氨水洗涤96孔板2次,去除失败的序列Wash the 96-well plate twice with 0.8 mL 6.5% ammonia to remove failed sequences.
用0.8mL去离子水冲洗96孔板2次,去除盐分Rinse the 96-well plate twice with 0.8 mL of deionized water to remove salt.
用0.8mL 3%三氟乙酸冲洗96孔板3次,去除DMT,观察到吸附层变橙红色The 96-well plate was rinsed three times with 0.8 mL of 3% trifluoroacetic acid to remove DMT, and the adsorption layer was observed to turn orange-red.
用0.8mL 0.1M TEAA冲洗96孔板Rinse the 96-well plate with 0.8 mL 0.1 M TEAA
用0.8mL去离子水冲洗96孔板2次,去除三氟乙酸和残余的盐分Rinse the 96-well plate twice with 0.8 mL of deionized water to remove trifluoroacetic acid and residual salt.
用0.6mL 20%乙腈进行洗脱,并收集冻干Elute with 0.6 mL 20% acetonitrile and collect the lyophilized
检测方法如下:使用Waters Acquity UPLC-LTQ LCMS(column:ACQUITY UPLC BEH C18)检测上述正义链和反义链纯度并分析分子量。实测值与理论值相符,表明所合成的是3’端和/或5’端缀合了基团的正义链以及反义链。The detection method is as follows: Waters Acquity UPLC-LTQ LCMS (column: ACQUITY UPLC BEH C18) was used to detect the purity of the above-mentioned sense chain and antisense chain and analyze the molecular weight. The measured values are consistent with the theoretical values, indicating that the synthesized sense chain and antisense chain are conjugated with groups at the 3' end and/or 5' end.
退火操作如下:将步骤1合成获得的正义链和反义链分别溶于注射用水中,配制0.1mg/mL-40mg/mL的溶液,用浓度仪标定等摩尔比混合,90℃加热5分钟,再缓慢自然降温,使它们通过氢键形成双链结构,取样送检测产品的SEC纯度。The annealing operation is as follows: the sense chain and antisense chain synthesized in step 1 are dissolved in water for injection respectively to prepare a solution of 0.1 mg/mL-40 mg/mL, and the mixture is calibrated with a concentration meter to equimolar ratio, heated at 90°C for 5 minutes, and then slowly cooled naturally to form a double-stranded structure through hydrogen bonding, and samples are taken for testing the SEC purity of the product.
双链样品冻干。The double-stranded samples were lyophilized.
实施例5小鼠体内测试缀合物的活性Example 5 Activity of the conjugate tested in mice
选择6-8周龄的SPF级雌性C57BL/6J小鼠,小鼠的体重为20±2g。给药前对上述小鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组3只,其中实验组小鼠给予缀合物,溶媒组小鼠给予磷酸盐缓冲盐水(PBS),按照每只小鼠给予3mg/kg缀合物的剂量进行皮下给药。给药后7天,颈椎脱臼牺牲动物,取肝组织,按照常规方法,将肝脏切块并置于RNALater(Invitrogen,AM7021M)中,用于后续RNA提取。肝脏组织放入裂解液(志昂生物,MNTR/FX96)中研磨(上海净信,JXFSTPRP-48L)提取总RNA,反转录为cDNA(Takara,6210B),通过荧光法qPCR(Vazyme,Q711)检测C5  mRNA的表达水平。SPF female C57BL/6J mice aged 6-8 weeks were selected, and the weight of the mice was 20±2g. The mice were weighed and observed before administration, and animals with uniform weight and normal condition were randomly divided into groups, with 3 mice in each group. The mice in the experimental group were given the conjugate, and the mice in the vehicle group were given phosphate buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 3 mg/kg per mouse. Seven days after administration, the animals were sacrificed by cervical dislocation, and the liver tissue was taken. According to conventional methods, the liver was cut into pieces and placed in RNALater (Invitrogen, AM7021M) for subsequent RNA extraction. The liver tissue was placed in a lysis buffer (Zhiang Bio, MNTR/FX96) and ground (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B), and C5 was detected by fluorescence qPCR (Vazyme, Q711). mRNA expression levels.
目的基因C5引物:Target gene C5 primer:
正向引物:CCAGCCCAATCAAGTTCCTAGAG(SEQ ID NO:157);Forward primer: CCAGCCCAATCAAGTTCCTAGAG (SEQ ID NO: 157);
反向引物:CGGCGTGTAAACAGGTTTGTC(SEQ ID NO:158);Reverse primer: CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 158);
内参基因GAPDH引物:Primers for internal reference gene GAPDH:
正向引物:TGCACCACCAACTGCTTAG(SEQ ID NO:159);Forward primer: TGCACCACCAACTGCTTAG (SEQ ID NO: 159);
反向引物:GATGCAGGGATGATGTTC(SEQ ID NO:160);Reverse primer: GATGCAGGGATGATGTTC (SEQ ID NO: 160);
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,本发明用于注射的缀合物序列见表6,阳性对照序列见表7,表6和表7中的缀合物按照实施例4的方法制备得到。使用受试缀合物后,小鼠肝脏中C5 mRNA的剩余表达水平结果见表8以及图1。如图1所示,与阳性化合物SD003317相比,缀合物SD003562,SD003565,SD003569,SD003571表现出了更好的抑制活性。The results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%). The sequences of the conjugates for injection of the present invention are shown in Table 6, and the positive control sequences are shown in Table 7. The conjugates in Table 6 and Table 7 were prepared according to the method of Example 4. After using the tested conjugates, the residual expression level of C5 mRNA in the liver of mice is shown in Table 8 and Figure 1. As shown in Figure 1, compared with the positive compound SD003317, the conjugates SD003562, SD003565, SD003569, and SD003571 showed better inhibitory activity.
表6

Table 6

表7
Table 7
表8
Table 8
实施例6大鼠体内测试缀合物的活性Example 6 Activity of the conjugate tested in rats
选择6-8周龄的SD雌性SPF级大鼠,大鼠的体重为200±2g。给药前对上述大鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组大鼠给予缀合物,溶媒组大鼠 给予磷酸盐缓冲盐水(PBS),按照每只大鼠给予5mg/kg缀合物的剂量进行皮下给药。给药后14天,颈椎脱臼牺牲动物,取肝组织,按照常规方法,将肝脏切块并置于RNALater(Invitrogen,AM7021M)中,用于后续RNA提取。肝脏组织放入裂解液(志昂生物,MNTR/FX96)中研磨(上海净信,JXFSTPRP-48L)提取总RNA,反转录为cDNA(Takara,6210B),通过荧光法qPCR(Vazyme,Q711)测量C5基因的表达水平。6-8 week old female SD SPF rats were selected, with a body weight of 200±2g. The rats were weighed and observed before administration, and animals with uniform body weight and normal condition were randomly divided into groups, with 4 rats in each group. The rats in the experimental group were given the conjugate, and the rats in the vehicle group were given Phosphate buffered saline (PBS) was administered subcutaneously at a dose of 5 mg/kg of the conjugate per rat. 14 days after administration, the animals were sacrificed by cervical dislocation, liver tissue was taken, and the liver was cut into pieces and placed in RNALater (Invitrogen, AM7021M) according to conventional methods for subsequent RNA extraction. The liver tissue was placed in a lysis solution (Zhiang Bio, MNTR/FX96) and ground (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B), and the expression level of the C5 gene was measured by fluorescence qPCR (Vazyme, Q711).
目的基因C5引物:Target gene C5 primer:
正向引物:GGTGGCCGTGACAATGTAGA(SEQ ID NO:165);Forward primer: GGTGGCCGTGACAATGTAGA (SEQ ID NO: 165);
反向引物:TGGGCACACGGTGTTTGTAT(SEQ ID NO:166);Reverse primer: TGGGCACACGGTGTTTGTAT (SEQ ID NO: 166);
内参基因GAPDH引物:Primers for internal reference gene GAPDH:
正向引物:GCCTGGAGAAACCTGCCAA(SEQ ID NO:167);Forward primer: GCCTGGAGAAACCTGCCAA (SEQ ID NO: 167);
反向引物:GTCATTGAGAGCAATGCCAGC(SEQ ID NO:168)。Reverse primer: GTCATTGAGAGCAATGCCAGC (SEQ ID NO:168).
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表9,缀合物按照实施例4的方法制备得到。使用本发明的受试缀合物后,大鼠肝脏中C5 mRNA的剩余表达水平结果见表10和图2。如图2所示,与阳性化合物SD003317相比,缀合物SD003574,SD003575,SD003576,SD003577表现出了更好的抑制活性。The results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%). The conjugate sequence for injection is shown in Table 9, and the conjugate is prepared according to the method of Example 4. After using the tested conjugate of the present invention, the residual expression level of C5 mRNA in rat liver is shown in Table 10 and Figure 2. As shown in Figure 2, compared with the positive compound SD003317, the conjugates SD003574, SD003575, SD003576, and SD003577 showed better inhibitory activity.
表9
Table 9
表10
Table 10
实施例7 Ugo单体、Cgo单体以及Ago单体的合成Example 7 Synthesis of Ugo monomer, Cgo monomer and Ago monomer
1.Ugo单体的合成路线如下:
1. The synthetic route of Ugo monomer is as follows:
(1)在冰水浴条件下分别将化合物1-4(9.99g,30.8mmol)、化合物U-1(市售,购买于上海皓鸿生物医药科技有限公司)(9.33g,43.1mmol,1.4equiv)和三苯基膦(16.6g,63.2mmol,2.0equiv)溶解于干燥的四氢呋喃(350.0mL)中,随后向反应体系中滴加偶氮二甲酸二异丙酯(13.1g,64.7mmol,12.6mL,2.1equiv)。随后将反应液在室温条件下搅拌2小时。反应完毕用饱和碳酸氢钠溶液和乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用硅胶柱层析(石油醚/乙酸乙酯10:1至8:1)进行分离纯化,得到白色固体化合物3-1(16.1g,反应收率99%)。化合物3-1的1H NMR数据:(400MHz,DMSO-d6)δ7.89-7.74(m,4H),7.56-7.53(m,2H),7.33-7.29(m,5H),5.80-5.73(m,1H),4.46-4.38(m,2H),4.00-3.91(m,2H),3.60-3.50(m,1H),3.49-3.43(m,2H)2.17-1.98(m,1H),1.13(s,3H),0.83(s,9H),0.01(d,J=6.0Hz,6H)。化合物3-1的质谱鉴定(C29H38N2O5Si,分子量522.1,[M+H]=523.2).(1) Compound 1-4 (9.99 g, 30.8 mmol), compound U-1 (commercially available, purchased from Shanghai Haohong Biopharmaceutical Technology Co., Ltd.) (9.33 g, 43.1 mmol, 1.4 equiv) and triphenylphosphine (16.6 g, 63.2 mmol, 2.0 equiv) were dissolved in dry tetrahydrofuran (350.0 mL) under ice-water bath conditions, and diisopropyl azodicarboxylate (13.1 g, 64.7 mmol, 12.6 mL, 2.1 equiv) was then added dropwise to the reaction system. The reaction solution was then stirred at room temperature for 2 hours. After the reaction was completed, the reaction solution was extracted with saturated sodium bicarbonate solution and ethyl acetate for 3 times, the organic phases were combined and spin-dried, and the crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate 10:1 to 8:1) to obtain a white solid compound 3-1 (16.1 g, reaction yield 99%). 1 H NMR data of compound 3-1: (400 MHz, DMSO-d 6 ) δ 7.89-7.74 (m, 4H), 7.56-7.53 (m, 2H), 7.33-7.29 (m, 5H), 5.80-5.73 (m, 1H), 4.46-4.38 (m, 2H), 4.00-3.91 (m, 2H), 3.60-3.50 (m, 1H), 3.49-3.43 (m, 2H) 2.17-1.98 (m, 1H), 1.13 (s, 3H), 0.83 (s, 9H), 0.01 (d, J=6.0 Hz, 6H). Mass spectrum identification of compound 3-1 (C 29 H 38 N 2 O 5 Si, molecular weight 522.1, [M+H]=523.2).
(2)室温条件下将化合物3-1(8.05g,15.4mmol)溶解于甲醇(160.0mL)中,随后向反应体系中缓慢加入甲醇钠(2.77g,15.4mmol,30%purity,1.0equiv)。随后将反应液在室温条件下搅拌12小时。反应完毕减压蒸馏除去溶剂甲醇,剩余体系用1M盐酸溶液和乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用硅胶柱层析(石油醚/乙酸乙酯10:1至0:1)进行分离纯化,得到白色固体化合物3-2(6.1g,反应收率94%)。化合物3-2的1H NMR数据:(400MHz,DMSO-d6)δ11.1(s,1H),7.48(d,J=8.0Hz,1H),7.30-7.24(m,5H),5.47-5.44(m,1H),4.45-4.35(m,2H),3.98-3.94(m,1H),3.79-3.78(m,1H),3.63-3.57(m,1H),3.38-3.35(m,2H),2.04-1.95(m,1H),1.10(s,3H),0.83(s,9H),0.01(d,J=6.0Hz,6H)。化合物3-2的质谱鉴定(C22H34N2O4Si,分子量418.1,[M+H]=418.2).(2) Compound 3-1 (8.05 g, 15.4 mmol) was dissolved in methanol (160.0 mL) at room temperature, and then sodium methoxide (2.77 g, 15.4 mmol, 30% purity, 1.0 equiv) was slowly added to the reaction system. The reaction solution was then stirred at room temperature for 12 hours. After the reaction was completed, the solvent methanol was removed by distillation under reduced pressure, and the remaining system was extracted with 1M hydrochloric acid solution and ethyl acetate for 3 times. The organic phases were combined and spin-dried, and the obtained crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate 10:1 to 0:1) to obtain a white solid compound 3-2 (6.1 g, reaction yield 94%). 1 H NMR data of compound 3-2: (400 MHz, DMSO-d 6 ) δ 11.1 (s, 1H), 7.48 (d, J = 8.0 Hz, 1H), 7.30-7.24 (m, 5H), 5.47-5.44 (m, 1H), 4.45-4.35 (m, 2H), 3.98-3.94 (m, 1H), 3.79-3.78 (m, 1H), 3.63-3.57 (m, 1H), 3.38-3.35 (m, 2H), 2.04-1.95 (m, 1H), 1.10 (s, 3H), 0.83 (s, 9H), 0.01 (d, J = 6.0 Hz, 6H). Mass spectrometry identification of compound 3-2 (C 22 H 34 N 2 O 4 Si, molecular weight 418.1, [M+H]=418.2).
(3)在-70℃条件下将化合物3-2(4.0g,9.56mmol)溶解于二氯甲烷(30.0mL)中,随后向反应体系中缓慢加入三氯化硼(1.0M in DCM,66.9mL,7.0equiv)。随后将反应液在-70℃条件下搅拌3小时。反应完 毕用三乙胺(5.0mL)和甲醇(30.0mL)淬灭反应,剩余体系用水和二氯甲烷萃取反应液3次,将有机相合并旋干,得到的粗产品用C18反相柱制备得到白色固体化合物3-3(0.7g,反应收率33%)。化合物3-3的1H NMR数据:(400MHz,DMSO-d6)δ7.54(d,J=8.0Hz,1H),5.51(d,J=7.6Hz,1H),3.88-3.84(m,1H),3.72-3.70(m,1H),3.61-3.59(m,2H),1.75-1.68(m,1H),1.09(d,J=6.4Hz,3H)。化合物3-3的质谱鉴定(C9H14N2O4,分子量214.1,[M+H]=215.2).(3) Compound 3-2 (4.0 g, 9.56 mmol) was dissolved in dichloromethane (30.0 mL) at -70 °C, and then boron trichloride (1.0 M in DCM, 66.9 mL, 7.0 equiv) was slowly added to the reaction system. The reaction solution was then stirred at -70 °C for 3 hours. After completion, the reaction was quenched with triethylamine (5.0 mL) and methanol (30.0 mL), and the remaining system was extracted with water and dichloromethane for 3 times. The organic phases were combined and dried by rotation, and the obtained crude product was prepared by C18 reverse phase column to obtain white solid compound 3-3 (0.7 g, reaction yield 33%). 1 H NMR data of compound 3-3: (400 MHz, DMSO-d 6 ) δ 7.54 (d, J = 8.0 Hz, 1H), 5.51 (d, J = 7.6 Hz, 1H), 3.88-3.84 (m, 1H), 3.72-3.70 (m, 1H), 3.61-3.59 (m, 2H), 1.75-1.68 (m, 1H), 1.09 (d, J = 6.4 Hz, 3H). Mass spectrometry identification of compound 3-3 (C 9 H 14 N 2 O 4 , molecular weight 214.1, [M+H]=215.2).
(4)在室温条件下将化合物3-1(0.4g,1.87mmol)溶解于吡啶(4.0mL)中,冰水浴条件下向反应体系中加入4,4'-双甲氧基三苯甲基氯(949.0mg,2.8mmol,1.5equiv)。随后将反应液在室温条件下搅拌2小时。反应完毕减压蒸馏除去溶剂吡啶,剩余体系用饱和碳酸氢钠溶液和乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用硅胶柱层析(石油醚/乙酸乙酯4:1至0:1)进行分离纯化,得到白色固体化合物3-4(0.7g,反应收率70%)。化合物3-4的1H NMR数据:(400MHz,DMSO-d6)δ11.3(s,1H),7.37(d,J=8.0Hz,1H),7.33-7.29(m,4H),7.20-7.17(m,5H),6.86-6.83(m,4H),5.40(d,J=8.0Hz,1H),4.61(d,J=4.8Hz,2H),3.83-3.79(m,2H),3.72(s,6H),3.71-3.68(m,1H),3.08-2.90(m,2H),1.90(s,1H),1.01(d,J=6.4Hz,3H)。化合物3-4的质谱鉴定(C30H32N2O6,分子量516.1,[M+H]=517.4).(4) Compound 3-1 (0.4 g, 1.87 mmol) was dissolved in pyridine (4.0 mL) at room temperature, and 4,4'-bismethoxytrityl chloride (949.0 mg, 2.8 mmol, 1.5 equiv) was added to the reaction system under ice-water bath conditions. The reaction solution was then stirred at room temperature for 2 hours. After the reaction was completed, the solvent pyridine was removed by distillation under reduced pressure, and the remaining system was extracted with saturated sodium bicarbonate solution and ethyl acetate for 3 times. The organic phases were combined and dried by spin drying, and the obtained crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate 4:1 to 0:1) to obtain a white solid compound 3-4 (0.7 g, reaction yield 70%). 1 H NMR data of compound 3-4: (400 MHz, DMSO-d 6 ) δ 11.3 (s, 1H), 7.37 (d, J = 8.0 Hz, 1H), 7.33-7.29 (m, 4H), 7.20-7.17 (m, 5H), 6.86-6.83 (m, 4H), 5.40 (d, J = 8.0 Hz, 1H), 4.61 (d, J = 4.8 Hz, 2H), 3.83-3.79 (m, 2H), 3.72 (s, 6H), 3.71-3.68 (m, 1H), 3.08-2.90 (m, 2H), 1.90 (s, 1H), 1.01 (d, J = 6.4 Hz, 3H). Mass spectrometry identification of compound 3-4 (C 30 H 32 N 2 O 6 , molecular weight 516.1, [M+H]=517.4).
(5)在室温氮气条件下将化合物3-4(1.2g,2.32mmol)溶解于二氯甲烷(12.0mL)中,分别向反应体系中加入4,5-二氰基咪唑(357.0mg,3.02mmol,1.3equiv)和双(二异丙基氨基)(2-氰基乙氧基)膦(1.05g,3.48mmol,1.5equiv)。随后将反应液在室温条件下搅拌2小时。反应完毕将反应液溶解于甲基叔丁基醚(10.0mL)和1%氢氧化钠溶液(10.0mL),室温条件下继续搅拌0.5小时。剩余体系用乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用C18反相柱制备得到白色固体化合物SA000016(1.2g,反应收率71%)。化合物SA000016的1H NMR数据:(400MHz,CD3CN)δ9.39(s,1H),7.39-7.24(m,10H),6.85-6.81(m,4H),5.43-5.39(m,1H),4.21-4.18(m,1H),3.86-3.77(m,1H),3.75(s,6H),3.56-3.53(m,5H),3.28-3.05(m,2H),2.62-2.61(m,2H),2.22-2.19(m,2H),1.22-1.07(m,15H).31P NMR数据:(400MHz,CD3CN)δ147.6,146.5。化合物SA000016的质谱鉴定(C39H49N4O7P,分子量716.1,[M+H]=717.5).(5) Compound 3-4 (1.2 g, 2.32 mmol) was dissolved in dichloromethane (12.0 mL) under nitrogen conditions at room temperature, and 4,5-dicyanoimidazole (357.0 mg, 3.02 mmol, 1.3 equiv) and bis(diisopropylamino)(2-cyanoethoxy)phosphine (1.05 g, 3.48 mmol, 1.5 equiv) were added to the reaction system respectively. The reaction solution was then stirred at room temperature for 2 hours. After the reaction was completed, the reaction solution was dissolved in methyl tert-butyl ether (10.0 mL) and 1% sodium hydroxide solution (10.0 mL), and continued to stir at room temperature for 0.5 hours. The remaining system was extracted with ethyl acetate for 3 times, and the organic phases were combined and dried by rotation. The crude product was used to prepare the white solid compound SA000016 (1.2 g, reaction yield 71%) using a C18 reverse phase column. 1 H NMR data of compound SA000016: (400 MHz, CD 3 CN) δ9.39 (s, 1H), 7.39-7.24 (m, 10H), 6.85-6.81 (m, 4H), 5.43-5.39 (m, 1H), 4.21-4.18 (m, 1H), 3.86-3.77 (m, 1H), 3.75 (s, 6H), 3.56-3.53 (m, 5H), 3.28-3.05 (m, 2H), 2.62-2.61 (m, 2H), 2.22-2.19 (m, 2H), 1.22-1.07 (m, 15H). 31 P NMR data: (400 MHz, CD 3 CN) δ147.6, 146.5. Mass spectrometry identification of compound SA000016 (C 39 H 49 N 4 O 7 P, molecular weight 716.1, [M+H]=717.5).
2.Cgo单体的合成路线如下:
2. The synthetic route of Cgo monomer is as follows:
(1)在室温条件下将化合物3-2(8.5g,20.3mmol,由实施例5制备)和1,2,4-三氮唑(19.5g,282.0mmol,13.9equiv)溶解于吡啶(128.0mL)中,随后在冰水浴条件下向反应体系中滴加4-氯苯基二氯磷酸酯(56.9mmol,9.25mL,2.8equiv)。将反应液在30℃条件下搅拌16小时。反应完毕减压蒸馏除去溶剂吡啶, 剩余体系用水和乙酸乙酯萃取反应液3次,将有机相合并旋干得到黄色油状的粗产品化合物C-1(9.5g),直接用于下一步反应。化合物C-1的质谱鉴定(C24H35N5O3Si,分子量469.1,[M+H]=470.3).(1) Compound 3-2 (8.5 g, 20.3 mmol, prepared by Example 5) and 1,2,4-triazole (19.5 g, 282.0 mmol, 13.9 equiv) were dissolved in pyridine (128.0 mL) at room temperature, and then 4-chlorophenyl dichlorophosphate (56.9 mmol, 9.25 mL, 2.8 equiv) was added dropwise to the reaction system under ice-water bath conditions. The reaction solution was stirred at 30° C. for 16 hours. After the reaction was completed, the solvent pyridine was removed by distillation under reduced pressure. The remaining system was extracted with water and ethyl acetate for 3 times, and the organic phases were combined and dried to obtain a crude yellow oily product, compound C-1 (9.5 g), which was directly used in the next step. Mass spectrometry identification of compound C-1 (C 24 H 35 N 5 O 3 Si, molecular weight 469.1, [M+H] = 470.3).
(2)在室温条件下将化合物C-1(9.5g,20.2mmol)溶解于1,4-二氧六环(95.0mL)中,随后向反应体系中加入氨水(1.38mol,212.1mL,25%purity,68.0equiv)。将反应液在30℃条件下搅拌16小时。反应完毕减压蒸馏除去溶剂,剩余体系用水和二氯甲烷萃取反应液3次,将有机相合并旋干得到黄色固体的粗产品化合物C-2(8.5g),直接用于下一步反应。化合物C-2的质谱鉴定(C22H35N3O3Si,分子量417.1,[M+H]=418.2).(2) Compound C-1 (9.5 g, 20.2 mmol) was dissolved in 1,4-dioxane (95.0 mL) at room temperature, and then aqueous ammonia (1.38 mol, 212.1 mL, 25% purity, 68.0 equiv) was added to the reaction system. The reaction solution was stirred at 30°C for 16 hours. After the reaction was completed, the solvent was removed by distillation under reduced pressure, and the remaining system was extracted with water and dichloromethane for 3 times. The organic phases were combined and dried to obtain a crude yellow solid compound C-2 (8.5 g), which was directly used in the next step. The mass spectrometry of compound C-2 was identified (C 22 H 35 N 3 O 3 Si, molecular weight 417.1, [M+H] = 418.2).
(3)在室温条件下将化合物C-2(8.5g,20.2mmol)溶解于N,N-二甲基甲酰胺(85.0mL)中,随后向反应体系中缓慢加入醋酸酐(3.1g,30.4mmol,2.85mL,1.5equiv)。将反应液在30℃条件下搅拌3小时。反应完毕减压蒸馏除去溶剂,剩余体系用饱和碳酸氢钠溶液和乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用硅胶柱层析(二氯甲烷/甲醇1:0至100:1)进行分离纯化,得到黄色固体化合物C-3(4.2g,反应收率43%)。化合物C-3的1H NMR数据:(400MHz,DMSO-d6)δ10.7(s,1H),7.79(d,J=7.2Hz,1H),7.29(m,5H),7.08(d,J=7.2Hz,1H),4.36(d,J=1.2Hz,2H),4.05-3.99(m,2H),3.72-3.67(m,1H),3.39(dd,J=6.4Hz,2H),2.15-2.08(m,1H),2.08(s,3H),1.15(d,J=6.4Hz,3H),0.85(s,9H),0.02(d,J=6.8Hz,6H)。化合物C-3的质谱鉴定(C24H37N3O4Si,分子量459.1,[M+H]=460.2).(3) Compound C-2 (8.5 g, 20.2 mmol) was dissolved in N,N-dimethylformamide (85.0 mL) at room temperature, and then acetic anhydride (3.1 g, 30.4 mmol, 2.85 mL, 1.5 equiv) was slowly added to the reaction system. The reaction solution was stirred at 30°C for 3 hours. After the reaction was completed, the solvent was removed by distillation under reduced pressure, and the remaining system was extracted with saturated sodium bicarbonate solution and ethyl acetate for 3 times. The organic phases were combined and dried by spin drying, and the obtained crude product was separated and purified by silica gel column chromatography (dichloromethane/methanol 1:0 to 100:1) to obtain yellow solid compound C-3 (4.2 g, reaction yield 43%). 1 H NMR data of compound C-3: (400 MHz, DMSO-d 6 ) δ 10.7 (s, 1H), 7.79 (d, J = 7.2 Hz, 1H), 7.29 (m, 5H), 7.08 (d, J = 7.2 Hz, 1H), 4.36 (d, J = 1.2 Hz, 2H), 4.05-3.99 (m, 2H), 3.72-3.67 (m, 1H), 3.39 (dd, J = 6.4 Hz, 2H), 2.15-2.08 (m, 1H), 2.08 (s, 3H), 1.15 (d, J = 6.4 Hz, 3H), 0.85 (s, 9H), 0.02 (d, J = 6.8 Hz, 6H). Mass spectrometry identification of compound C-3 (C 24 H 37 N 3 O 4 Si, molecular weight 459.1, [M+H]=460.2).
(4)在-78℃条件下将化合物C-3(4.3g,9.35mmol)溶解于二氯甲烷(46.0mL)中,随后向反应体系中缓慢加入三氯化硼(1.0M in DCM,46.8mL,5.0equiv)。随后将反应液在-78℃条件下搅拌4小时。反应完毕用三乙胺(40.0mL)和甲醇(88.0mL)淬灭反应,剩余体系用水和二氯甲烷萃取反应液3次,将有机相合并旋干,得到的粗产品用C18反相柱制备得到白色固体化合物C-4(0.96g,反应收率40%)。化合物C-4的1H NMR数据:(400MHz,DMSO-d6)δ10.7(s,1H),8.01(d,J=7.2Hz,1H),7.12(d,J=7.2Hz,1H),4.60(d,J=4.8Hz,2H),4.53-4.50(m,1H),4.00-3.99(m,1H),3.75-3.70(m,2H),3.37-3.32(m,2H),2.08(s,3H),1.81-1.77(m,1H),1.01(d,J=6.4Hz,3H)。化合物C-4的质谱鉴定(C11H17N3O4,分子量255.1,[M+H]=256.2).(4) Compound C-3 (4.3 g, 9.35 mmol) was dissolved in dichloromethane (46.0 mL) at -78 °C, and then boron trichloride (1.0 M in DCM, 46.8 mL, 5.0 equiv) was slowly added to the reaction system. The reaction solution was then stirred at -78 °C for 4 hours. After the reaction was completed, the reaction was quenched with triethylamine (40.0 mL) and methanol (88.0 mL). The remaining system was extracted with water and dichloromethane for 3 times. The organic phases were combined and dried by rotation. The crude product was used to prepare a white solid compound C-4 (0.96 g, reaction yield 40%) using a C18 reverse phase column. 1 H NMR data of compound C-4: (400 MHz, DMSO-d 6 ) δ 10.7 (s, 1H), 8.01 (d, J = 7.2 Hz, 1H), 7.12 (d, J = 7.2 Hz, 1H), 4.60 (d, J = 4.8 Hz, 2H), 4.53-4.50 (m, 1H), 4.00-3.99 (m, 1H), 3.75-3.70 (m, 2H), 3.37-3.32 (m, 2H), 2.08 (s, 3H), 1.81-1.77 (m, 1H), 1.01 (d, J = 6.4 Hz, 3H). Mass spectrometry identification of compound C-4 (C 11 H 17 N 3 O 4 , molecular weight 255.1, [M+H] = 256.2).
(5)在室温条件下将化合物C-4(1.5g,5.88mmol)溶解于吡啶(10.0mL)中,冰水浴条件下向反应体系中加入4,4'-双甲氧基三苯甲基氯(2.4g,7.05mmol,1.2equiv)。随后将反应液在室温条件下搅拌4小时。反应完毕减压蒸馏除去溶剂吡啶,剩余体系用饱和碳酸氢钠溶液和乙酸乙酯萃取反应液3次,将有机相合并旋干,得到的粗产品用硅胶柱层析(石油醚/乙酸乙酯4:1至0:1)进行分离纯化,得到白色固体化合物C-5(0.7g,反应收率70%)。化合物C-5的1H NMR数据:(400MHz,CDCl3)δ9.71(s,1H),7.39(d,J=7.3Hz,3H),7.35-7.21(m,7H),7.06(d,J=7.1Hz,1H),6.85(d,J=8.8Hz,4H),4.71(d,J=3.3Hz,1H),4.43(dd,J=13.8,4.5Hz,1H),4.23-3.99(m,2H),3.80(s,6H),3.50-3.38(m,1H),3.31(dd,J=10.0,4.1Hz,1H),2.69(t,J=9.4Hz,1H),2.21(s,3H),1.08(d,J=6.1Hz,3H)。化合物C-5的质谱鉴定(C32H35N3O6,分子量557.1,[M+H]=558.4).(5) Compound C-4 (1.5 g, 5.88 mmol) was dissolved in pyridine (10.0 mL) at room temperature, and 4,4'-bismethoxytrityl chloride (2.4 g, 7.05 mmol, 1.2 equiv) was added to the reaction system under ice-water bath conditions. The reaction solution was then stirred at room temperature for 4 hours. After the reaction was completed, the solvent pyridine was removed by distillation under reduced pressure, and the remaining system was extracted with saturated sodium bicarbonate solution and ethyl acetate for 3 times. The organic phases were combined and dried by spin drying, and the obtained crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate 4:1 to 0:1) to obtain a white solid compound C-5 (0.7 g, reaction yield 70%). 1 H NMR data of compound C-5: (400 MHz, CDCl 3 ) δ9.71 (s, 1H), 7.39 (d, J=7.3 Hz, 3H), 7.35-7.21 (m, 7H), 7.06 (d, J=7.1 Hz, 1H), 6.85 (d, J=8.8 Hz, 4H), 4.71 (d, J=3.3 Hz, 1H), 4.43 (dd, J=13.8, 4.5 Hz, 1H), 4.23-3.99 (m, 2H), 3.80 (s, 6H), 3.50-3.38 (m, 1H), 3.31 (dd, J=10.0, 4.1 Hz, 1H), 2.69 (t, J=9.4 Hz, 1H), 2.21 (s, 3H), 1.08 (d, J=6.1 Hz, 3H). Mass spectrometry identification of compound C-5 (C 32 H 35 N 3 O 6 , molecular weight 557.1, [M+H]=558.4).
(6)在室温氮气条件下将化合物C-5(2.0g,3.59mmol)溶解于二氯甲烷(20.0mL)中,分别向反应体系中加入4,5-二氰基咪唑(466.0mg,3.95mmol,1.1equiv)和双(二异丙基氨基)(2-氰基乙氧基)膦(1.4g,4.66mmol,1.48mL,1.3equiv)。随后将反应液在室温条件下搅拌2小时。反应完毕将反应液溶解于甲基叔丁基醚(10.0mL)和1%氢氧化钠溶液(10.0mL),室温条件下继续搅拌0.5小时。剩余体系用饱和碳酸氢钠溶液和二氯甲烷萃取反应液3次,将有机相合并旋干,得到的粗产品用C18反相柱制备得到白色固体化合物SA000015(1.5g,反应收率55%)。化合物SA000015的1H NMR数据:(400MHz,CD3CN)δ9.15(s,1H),7.50-7.18(m,11H),6.84-6.80(m,4H),4.22-4.08(m,2H),3.75-3.22(m,11H),3.23-3.22(m,2H),2.62-2.51(m,2H),2.38-2.35(m,1H),2.12(s,3H),1.022-1.07(m,15H).31P NMR数据:(400MHz,CD3CN)δ147.5,146.7。化合物SA000015的质谱鉴定(C41H52N5O7P,分子量757.1,[M+H]=758.5).(6) Compound C-5 (2.0 g, 3.59 mmol) was dissolved in dichloromethane (20.0 mL) under nitrogen conditions at room temperature, and 4,5-dicyanoimidazole (466.0 mg, 3.95 mmol, 1.1 equiv) and bis(diisopropylamino)(2-cyanoethoxy)phosphine (1.4 g, 4.66 mmol, 1.48 mL, 1.3 equiv) were added to the reaction system respectively. The reaction solution was then stirred at room temperature for 2 hours. After the reaction was completed, the reaction solution was dissolved in methyl tert-butyl ether (10.0 mL) and 1% sodium hydroxide solution (10.0 mL), and continued to stir at room temperature for 0.5 hours. The remaining system was extracted with saturated sodium bicarbonate solution and dichloromethane for 3 times, and the organic phases were combined and spin-dried. The crude product was used on a C18 reverse phase column to obtain a white solid compound SA000015 (1.5 g, reaction yield 55%). 1 H NMR data of compound SA000015: (400 MHz, CD 3 CN) δ9.15 (s, 1H), 7.50-7.18 (m, 11H), 6.84-6.80 (m, 4H), 4.22-4.08 (m, 2H), 3.75-3.22 (m, 11H), 3.23-3.22 (m, 2H), 2.62-2.51 (m, 2H), 2.38-2.35 (m, 1H), 2.12 (s, 3H), 1.022-1.07 (m, 15H). 31 P NMR data: (400 MHz, CD 3 CN) δ147.5, 146.7. Mass spectrometry identification of compound SA000015 (C 41 H 52 N 5 O 7 P, molecular weight 757.1, [M+H]=758.5).
3.Ago单体的合成路线如下:
3. The synthetic route of Ago monomer is as follows:
(1)将无水二异丙胺(16.2g,160.0mmol,22.6mL,2.0equiv)溶于350mL无水四氢呋喃中,降温至零下70℃至零下78℃之间,氮气置换保护,滴加正丁基锂溶液(2.5M,67.1mL)(缓慢滴加,滴加过程至少10分钟以上),反应液在零下70℃至零下78℃之间继续搅拌半小时。将化合物1(9.44g,79.9mmol,9.17mL,1.0equiv)溶于175mL无水四氢呋喃中,降温至零下70℃至零下78℃之间,氮气置换保护下,滴加前一步所得溶液(缓慢滴加,滴加过程至少10分钟以上)。此反应液在零下70℃至零下78℃之间继续搅拌半小时。维持之前温度,将六甲磷酰三胺(26.1g,146mmol,25.6mL,1.82equiv)与苄基氯甲基醚(17.5g,112mmol,15.5mL,1.4equiv)缓慢滴加到此前反应液中(缓慢滴加,滴加过程至少10分钟以上),滴加完毕,升温至0℃继续搅拌3小时。TLC与LCMS检测化合物1消失。分两批加入600mL饱和氯化铵溶液淬灭反应,200mL甲基叔丁基醚萃取混合物,收集有机相,饱和食盐水洗涤有机相,无水硫酸钠干燥有机相,过滤之后,浓缩滤液,所得粗产品用硅胶柱层析分离纯化(石油醚/乙酸乙酯=100/1到1/1),得到淡褐色化合物2(9.69g,40.7mmol,51%收率).1H NMR(400MHz,CDCl3):δ7.46-7.28(m,10H),4.58-4.46(m,2H),4.19-4.08(m,1H),3.82-3.67(m,5H),2.77(q,J=6.1Hz,1H),1.24(d,J=6.5Hz,4H).LC-MS:C13H18O4,分子量238.1,239.1(M+H).(1) Dissolve anhydrous diisopropylamine (16.2 g, 160.0 mmol, 22.6 mL, 2.0 equiv) in 350 mL of anhydrous tetrahydrofuran, cool to -70°C to -78°C, replace with nitrogen, and add n-butyl lithium solution (2.5 M, 67.1 mL) dropwise (slowly dropwise, the dropwise addition process lasts for at least 10 minutes), and the reaction solution is stirred at -70°C to -78°C for half an hour. Dissolve compound 1 (9.44 g, 79.9 mmol, 9.17 mL, 1.0 equiv) in 175 mL of anhydrous tetrahydrofuran, cool to -70°C to -78°C, and replace with nitrogen, and add the solution obtained in the previous step dropwise (slowly dropwise, the dropwise addition process lasts for at least 10 minutes). The reaction solution is stirred at -70°C to -78°C for half an hour. Maintaining the previous temperature, hexamethylphosphoric acid triamide (26.1 g, 146 mmol, 25.6 mL, 1.82 equiv) and benzyl chloromethyl ether (17.5 g, 112 mmol, 15.5 mL, 1.4 equiv) were slowly added dropwise to the previous reaction solution (slowly added dropwise, the addition process lasted for at least 10 minutes), and after the addition was completed, the temperature was raised to 0°C and stirring was continued for 3 hours. TLC and LCMS detected the disappearance of compound 1. 600 mL of saturated ammonium chloride solution was added in two batches to quench the reaction, and the mixture was extracted with 200 mL of methyl tert-butyl ether. The organic phase was collected, washed with saturated brine, and dried over anhydrous sodium sulfate. After filtration, the filtrate was concentrated. The crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate = 100/1 to 1/1) to obtain a light brown compound 2 (9.69 g, 40.7 mmol, 51% yield). 1 H NMR (400 MHz, CDCl 3 ): δ7.46-7.28 (m, 10H), 4.58-4.46 (m, 2H), 4.19-4.08 (m, 1H), 3.82-3.67 (m, 5H), 2.77 (q, J = 6.1 Hz, 1H), 1.24 (d, J = 6.5 Hz, 4H). LC-MS: C 13 H 18 O 4 , molecular weight 238.1,239.1(M+H).
(2)将化合物2(14.7g,61.7mmol,1.0equiv)溶于150mL二氯甲烷中,氮气保护,室温下加入咪唑(16.8g,247.0mmol,4.0equiv)与叔丁基二甲基氯硅烷(27.9g,185.0mmol,22.7mL,3.0equiv)。反应液在室温下搅拌一小时,TLC与LCMS检测显示化合物2消失。反应液中加入100mL二氯甲烷,400mL饱和食盐水洗涤反应液两次,干燥有机相,过滤后浓缩有机相,所得粗产品硅胶柱层析分离纯化(石油醚/乙酸乙酯=100/1到10/1),得到淡黄色油状物化合物3(12.0g,34.0mmol,55%收率)。1H NMR(400MHz,CDCl3):δ7.40-7.25(m,5H),4.52(d,J=2.4Hz,2H),4.10(t,J=6.3Hz,1H),3.75-3.65(m,4H),3.59(dd,J=9.2,5.3Hz,1H),2.79(dt,J=8.4,5.9Hz,1H),1.17(d,J=6.2Hz,3H),0.86(s,9H),0.04(d,J=8.6Hz,6H).LC- MS:C19H32O4Si,分子量352.1,353.2(M+H).(2) Compound 2 (14.7 g, 61.7 mmol, 1.0 equiv) was dissolved in 150 mL of dichloromethane, and under nitrogen protection, imidazole (16.8 g, 247.0 mmol, 4.0 equiv) and tert-butyldimethylsilyl chloride (27.9 g, 185.0 mmol, 22.7 mL, 3.0 equiv) were added at room temperature. The reaction solution was stirred at room temperature for one hour, and TLC and LCMS detection showed that compound 2 disappeared. 100 mL of dichloromethane was added to the reaction solution, and the reaction solution was washed twice with 400 mL of saturated brine. The organic phase was dried, filtered and concentrated, and the crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate = 100/1 to 10/1) to obtain a light yellow oil compound 3 (12.0 g, 34.0 mmol, 55% yield). 1 H NMR (400MHz, CDCl 3 ): δ7.40-7.25 (m, 5H), 4.52 (d, J = 2.4Hz, 2H), 4.10 (t, J = 6.3Hz, 1H), 3.75-3.65 (m, 4H), 3.59 (dd, J = 9.2, 5.3Hz, 1H), 2.79 (dt, J = 8.4 ,5.9Hz,1H),1.17(d,J=6.2Hz,3H),0.86(s,9H),0.04(d,J=8.6Hz,6H).LC- MS: C 19 H 32 O 4 Si, molecular weight 352.1, 353.2 (M+H).
(3)将化合物3(11.1g,31.5mmol,1.0equiv)溶于四氢呋喃中,降温至零下70℃到零下60℃之间,氮气保护下滴加二异丁基氢化铝(1.0M,69.3mL,2.2equiv)。在此温度下继续搅拌两小时。LCMS检测显示化合物3消失,升温至0℃,加入20mL乙酸乙酯,再用100mL酒石酸钾钠溶液淬灭反应,继续搅拌半小时。此混合物用100mL饱和食盐水洗涤,无水硫酸钠干燥后过滤浓缩,得到淡黄色油状物化合物4(9.75g,30.0mmol,95%收率).1H NMR(400MHz,CDCl3):δ7.40-7.27(m,5H),4.59-4.45(m,2H),4.19(dd,J=6.2,3.7Hz,1H),4.01(dd,J=11.3,4.0Hz,1H),3.78-3.60(m,3H),1.78-1.68(m,1H),1.29-1.21(m,3H),0.95-0.87(m,9H),0.12-0.02(m,6H).LC-MS:C18H32O3Si,分子量324.1,325.2(M+H).(3) Compound 3 (11.1 g, 31.5 mmol, 1.0 equiv) was dissolved in tetrahydrofuran, cooled to between -70°C and -60°C, and diisobutylaluminum hydride (1.0 M, 69.3 mL, 2.2 equiv) was added dropwise under nitrogen protection. Stirring was continued at this temperature for two hours. LCMS detection showed that compound 3 disappeared. The temperature was raised to 0°C, 20 mL of ethyl acetate was added, and the reaction was quenched with 100 mL of potassium sodium tartrate solution, and stirring was continued for half an hour. The mixture was washed with 100 mL of saturated brine, dried over anhydrous sodium sulfate, filtered and concentrated to give a light yellow oily compound 4 (9.75 g, 30.0 mmol, 95% yield). 1 H NMR (400 MHz, CDCl 3 ): δ7.40-7.27 (m, 5H), 4.59-4.45 (m, 2H), 4.19 (dd, J=6.2, 3.7 Hz, 1H), 4.01 (dd, J=11.3, 4.0 Hz, 1H), 3.78-3.60 (m, 3H), 1.78-1.68 (m, 1H), 1.29-1.21 (m, 3H), 0.95-0.87 (m, 9H), 0.12-0.02 (m, 6H). LC-MS: C 18 H 32 O 3 Si, molecular weight 324.1, 325.2 (M+H).
(4)将化合物4(9.75g,30.0mmol,1.0equiv)溶于四氢呋喃中,降温至0℃,氮气保护下滴加对甲苯磺酰氯(11.5g,60.1mmol,2.0equiv)与甲基咪唑(6.17g,75.1mmol,5.99mL,2.5equiv),滴加完毕升温至室温继续搅拌16小时。LCMS检测显示化合物4消失。反应液中加入20mL乙酸乙酯,冰浴下用100mL酒石酸钾钠溶液淬灭反应,继续搅拌半小时。此混合物用100mL饱和食盐水洗涤后,无水硫酸钠干燥,过滤浓缩得到淡黄色油状物化合物5(13.7g,28.6mmol,95%收率)粗产品。1H NMR(400MHz,CDCl3):δ7.89-7.68(m,2H),7.42-7.17(m,10H),4.47-4.33(m,2H),4.23(dd,J=9.6,5.1Hz,1H),4.13-4.06(m,1H),4.01-3.94(m,1H),3.52-3.34(m,2H),2.43(s,3H),2.02-1.89(m,1H),1.10(d,J=6.3Hz,3H),0.81(s,8H),0.04--0.05(m,6H).LC-MS:C25H38O5SSi,分子量478.1,479.2(M+H).(4) Compound 4 (9.75 g, 30.0 mmol, 1.0 equiv) was dissolved in tetrahydrofuran, cooled to 0°C, and p-toluenesulfonyl chloride (11.5 g, 60.1 mmol, 2.0 equiv) and methylimidazole (6.17 g, 75.1 mmol, 5.99 mL, 2.5 equiv) were added dropwise under nitrogen protection. After the addition was completed, the temperature was raised to room temperature and stirring was continued for 16 hours. LCMS detection showed that compound 4 disappeared. 20 mL of ethyl acetate was added to the reaction solution, and the reaction was quenched with 100 mL of potassium sodium tartrate solution under ice bath, and stirring was continued for half an hour. The mixture was washed with 100 mL of saturated brine, dried over anhydrous sodium sulfate, filtered and concentrated to obtain a crude product of light yellow oily compound 5 (13.7 g, 28.6 mmol, 95% yield). 1 H NMR (400MHz, CDCl 3 ): δ7.89-7.68(m,2H),7.42-7.17(m,10H),4.47-4.33(m,2H),4.23(dd,J=9.6,5.1Hz,1H),4.13-4.06(m,1H),4.01-3.94(m,1H),3 .52-3.34(m,2H),2.43(s,3H),2.02-1.89(m,1H),1.10(d,J=6.3Hz,3H),0.81(s,8H),0.04--0.05(m,6H).LC-MS:C 25 H 38 O 5 SSi, molecular weight 478.1, 479.2(M+H) .
(5)氮气保护下,向干燥的反应瓶中加入化合物5(13.7g,28.6mmol,1.0equiv)与35mL乙腈,35-40℃下蒸除乙腈,除去化合物5中水分。在氮气保护下,另一洁净干燥的反应瓶中加入80mL N,N-二甲基甲酰胺,化合物5-1(9H-嘌呤-6-胺)(4.25g,31.5mmol,1.1equiv)与碳酸钾(3.96g,28.6mmol,1.0equiv),升温至95-100℃继续搅拌半小时。此温度下向反应液中滴加化合物5(13.7g,28.6mmol,1.0equiv)的N,N-二甲基甲酰胺(60mL)溶液,继续搅拌12小时。LCMS检测显示化合物5消失,反应液降至室温,加入200mL乙酸乙酯,此混合溶液依次用200mL碳酸氢钠溶液,100mL饱和食盐水洗涤,有机相用无水硫酸钠干燥,过滤并浓缩滤液,得到的粗产品硅胶柱层析(石油醚/乙酸乙酯=20/1到10/1)分离纯化,得到淡黄色油状物化合物6(6.2g,14.0mmol,49%收率)。1H NMR(400MHz,CDCl3):δ8.37(s,1H),7.75(s,1H),7.39-7.24(m,6H),5.66(br,s,2H),4.47-4.34(m,3H),4.21(dd,J=14.1,8.8Hz,1H),4.07(dd,J=6.2,4.9Hz,1H),3.42-3.34(m,2H),2.10-1.96(m,1H),1.19(d,J=6.4Hz,3H),0.90(s,9H),0.06(d,J=6.0Hz,6H).LC-MS:C23H35N5O2Si,分子量441.1,442.3(M+H)。(5) Under nitrogen protection, compound 5 (13.7 g, 28.6 mmol, 1.0 equiv) and 35 mL of acetonitrile were added to a dry reaction bottle, and the acetonitrile was evaporated at 35-40°C to remove the water in compound 5. Under nitrogen protection, 80 mL of N,N-dimethylformamide, compound 5-1 (9H-purin-6-amine) (4.25 g, 31.5 mmol, 1.1 equiv) and potassium carbonate (3.96 g, 28.6 mmol, 1.0 equiv) were added to another clean and dry reaction bottle, and the temperature was raised to 95-100°C and stirred for half an hour. At this temperature, a solution of compound 5 (13.7 g, 28.6 mmol, 1.0 equiv) in N,N-dimethylformamide (60 mL) was added dropwise to the reaction solution, and stirring was continued for 12 hours. LCMS detection showed that compound 5 disappeared. The reaction solution was cooled to room temperature, 200 mL of ethyl acetate was added, and the mixed solution was washed with 200 mL of sodium bicarbonate solution and 100 mL of saturated brine in sequence. The organic phase was dried over anhydrous sodium sulfate, filtered and the filtrate was concentrated. The crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate = 20/1 to 10/1) to give compound 6 (6.2 g, 14.0 mmol, 49% yield) as a light yellow oil. 1 H NMR (400MHz, CDCl 3 ): δ8.37(s,1H),7.75(s,1H),7.39-7.24(m,6H),5.66(br,s,2H),4.47-4.34(m,3H),4.21(dd , J=14.1,8.8Hz,1H), 4.07 (dd,J=6.2,4 ... ) .
(6)室温下将钯碳(3.0g,10%纯度)溶于25mL甲醇中,加入25mL化合物6(5.2g,11.8mmol,1.0equiv)甲醇溶液和三氟乙酸(134.0mg,1.18mmol,87.2uL)。此反应液在50psi氢气压力下搅拌48小时。LCMS检测显示化合物6消失。将反应液过滤浓缩得到粗产物淡黄色油状物化合物7(3.9g,11.1mmol)。1H NMR(400MHz,CDCl3):δ8.21(s,1H),8.12(s,1H),4.50-4.36(m,1H),4.33-4.22(m,1H),4.15-4.02(m,1H),3.53(d,J=5.9Hz,2H),2.21-2.09(m,1H),1.25(d,J=6.4Hz,3H),0.88(s,9H),0.05(d,J=3.1Hz,6H).LC-MS:C16H29N5O2Si,分子量351.1,352.2(M+1).(6) Palladium carbon (3.0 g, 10% purity) was dissolved in 25 mL of methanol at room temperature, and 25 mL of compound 6 (5.2 g, 11.8 mmol, 1.0 equiv) methanol solution and trifluoroacetic acid (134.0 mg, 1.18 mmol, 87.2 uL) were added. The reaction solution was stirred under 50 psi hydrogen pressure for 48 hours. LCMS detection showed that compound 6 disappeared. The reaction solution was filtered and concentrated to obtain a crude product of light yellow oil compound 7 (3.9 g, 11.1 mmol). 1 H NMR (400MHz, CDCl 3 ): δ8.21(s,1H),8.12(s,1H),4.50-4.36(m,1H),4.33-4.22(m,1H),4.15-4.02(m,1H),3.53(d,J=5.9Hz,2H),2.21-2.09(m,1H) ,1.25(d,J=6.4Hz,3H),0.88(s,9H),0.05(d,J=3.1Hz,6H).LC-MS:C 16 H 29 N 5 O 2 Si, molecular weight 351.1, 352.2(M+1).
(7)将化合物7(3.9g,11.1mmol,1.0equiv)置于洁净干燥反应瓶中,氮气保护下加入10mL吡啶,升温至蒸除吡啶,重复一次此操作,以除去化合物7中水分。加入28mL吡啶,冰浴下加入三甲基氯硅烷(4.8g,44.4mmol,5.63mL,4.0equiv),升温至室温,继续搅拌两小时,TLC检测显示化合物7消失,冰浴下加入苯甲酰氯(6.2g,44.4mmol,5.15mL,4.0equiv),继续搅拌2小时,TLC检测显示原料反应消失,滴加60mL水与90mL浓氨水继续搅拌半小时。用250mL乙酸乙酯萃取反应液,有机相用饱和食盐水洗涤,干燥后抽滤浓缩,所得粗产品硅胶柱层析分离纯化(洗脱体系:二氯甲烷/甲醇=50/1到10/1),得到淡黄色油状物化合物8(4.0g,8.78mmol,79%收率).1H NMR(400MHz,CDCl3):δ9.22-8.90(m,1H),8.79(s,1H),8.07-8.04(m,2H),8.03(d,J=1.4Hz,1H),7.65-7.59(m,1H),7.57-7.50(m,2H),4.62-4.50(m,1H),4.42(dd,J=14.3,8.6Hz,1H),4.24-4.09(m,1H),4.05(d,J=6.3Hz,1H),3.59-3.48(m,1H),3.47-3.35(m,1H),2.04-1.98(m,1H),1.31(d,J=6.3Hz,3H),0.98-0.84(m,9H),0.11(d,J=10.1Hz,5H).LC-MS:C23H33N5O3Si,分子量 455.2,456.3(M+H).(7) Compound 7 (3.9 g, 11.1 mmol, 1.0 equiv) was placed in a clean dry reaction bottle, 10 mL of pyridine was added under nitrogen protection, the temperature was raised to evaporate the pyridine, and this operation was repeated once to remove the water in compound 7. 28 mL of pyridine was added, trimethylsilyl chloride (4.8 g, 44.4 mmol, 5.63 mL, 4.0 equiv) was added under ice bath, the temperature was raised to room temperature, and stirring was continued for two hours. TLC detection showed that compound 7 disappeared. Benzoyl chloride (6.2 g, 44.4 mmol, 5.15 mL, 4.0 equiv) was added under ice bath, and stirring was continued for 2 hours. TLC detection showed that the raw material reaction disappeared. 60 mL of water and 90 mL of concentrated ammonia were added dropwise and stirring was continued for half an hour. The reaction solution was extracted with 250 mL of ethyl acetate, and the organic phase was washed with saturated brine, dried, filtered, and concentrated. The crude product was separated and purified by silica gel column chromatography (elution system: dichloromethane/methanol=50/1 to 10/1) to obtain a light yellow oily compound 8 (4.0 g, 8.78 mmol, 79% yield). 1 H NMR (400 MHz, CDCl 3 ): δ9.22-8.90 (m, 1H), 8.79 (s, 1H), 8.07-8.04 (m, 2H), 8.03 (d, J=1.4 Hz, 1H), 7.65-7.59 (m, 1H), 7.57-7.50 (m, 2H), 4.62-4.50 (m, 1H), 4.42 (dd, J=14.3, 8.6 Hz, 1H), 4.2 4-4.09(m,1H),4.05(d,J=6.3Hz,1H),3.59-3.48(m,1H),3.47-3.35(m,1H),2.04-1.98(m,1H),1.31(d,J=6.3Hz,3H),0.98-0.84(m,9H),0.11(d,J =10.1Hz,5H).LC-MS:C 23 H 33 N 5 O 3 Si, molecular weight 455.2,456.3(M+H).
(8)将化合物8(4.0g,8.78mmol,1.0equiv)置于洁净干燥反应瓶中,氮气保护下加入10mL吡啶,升温蒸除吡啶,重复一次此操作,以除去化合物8中水分。加入28mL吡啶,冰浴下加入4,4'-双甲氧基三苯甲基氯(3.27g,9.66mmol,1.1equiv),升至室温继续搅拌1小时,TLC检测显示化合物8消失,反应混合物中加入150mL乙酸乙酯,并用200mL碳酸氢钠溶液,150mL饱和食盐水洗涤,干燥有机相,过滤有机相并浓缩滤液,所得粗产品硅胶柱层析分离纯化(梯度洗脱:石油醚/乙酸乙酯=10/1到0/1),得到淡黄色油状物化合物9(5.91g,7.8mmol,88%收率)。1H NMR(400MHz,CDCl3):δ9.07(br s,1H),8.82(s,1H),8.04(d,J=7.1Hz,2H),7.80(s,1H),7.65-7.58(m,1H),7.57-7.50(m,2H),7.28-7.13(m,9H),6.81-6.69(m,4H),4.52-4.43(m,1H),4.25(dd,J=14.2,8.6Hz,1H),4.07(dd,J=6.3,4.2Hz,1H),3.76(d,J=4.5Hz,6H),3.22(dd,J=9.8,5.4Hz,1H),3.04(dd,J=9.8,6.1Hz,1H),2.34(dd,J=8.1,4.5Hz,1H),1.19(d,J=6.3Hz,3H),0.90-0.77(m,9H),0.07--0.09(m,6H).LC-MS:C44H51N5O5Si,分子量757.3,758.4(M+H).(8) Compound 8 (4.0 g, 8.78 mmol, 1.0 equiv) was placed in a clean dry reaction bottle, 10 mL of pyridine was added under nitrogen protection, the pyridine was evaporated by heating, and this operation was repeated once to remove the water in compound 8. 28 mL of pyridine was added, and 4,4'-bismethoxytrityl chloride (3.27 g, 9.66 mmol, 1.1 equiv) was added under ice bath, the mixture was heated to room temperature and stirred for 1 hour. TLC detection showed that compound 8 disappeared. 150 mL of ethyl acetate was added to the reaction mixture, and the mixture was washed with 200 mL of sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and the filtrate was concentrated. The crude product was separated and purified by silica gel column chromatography (gradient elution: petroleum ether/ethyl acetate = 10/1 to 0/1) to obtain a light yellow oil compound 9 (5.91 g, 7.8 mmol, 88% yield). 1 H NMR (400 MHz, CDCl 3 ): δ9.07 (br s,1H),8.82(s,1H),8.04(d,J=7.1Hz,2H),7.80(s,1H),7.65-7.58(m,1H),7.57-7.50(m,2H),7.28-7.13(m,9H),6.81-6.69(m,4H),4.52-4.43(m ,1H),4.25(dd,J=14.2,8.6Hz,1H),4.07(dd,J=6 .3,4.2Hz,1H),3.76(d,J=4.5Hz,6H),3.22(dd,J=9.8,5.4Hz,1H),3.04(dd,J=9.8,6.1Hz,1H),2.34(dd,J=8.1,4.5Hz,1H),1.19(d,J=6.3Hz,3H),0.90-0. 77(m,9H),0.07--0.09(m,6H).LC-MS:C 44 H 51 N 5 O 5 Si, molecular weight 757.3, 758.4(M+H).
(9)将化合物9(3.00g,3.96mmol,1.0equiv)溶于四氢呋喃中,氮气保护、冰浴下加入氢氟酸吡啶盐(2.26g,79.2mmol,2.1mL,20.0equiv)和咪唑(10.8g,158.0mmol,40.0equiv)。升温至室温,继续搅拌2小时。LCMS检测显示化合物9消失。加入50mL乙酸乙酯,并用100mL碳酸氢钠溶液,50mL饱和食盐水洗涤,干燥后过滤,浓缩滤液,所得粗产品硅胶柱层析分离纯化(梯度洗脱:石油醚/乙酸乙酯=10/1到0/1),得到淡黄色油状物化合物10(2.44g,3.79mmol,96%收率)。1H NMR(400MHz,DMSO-d6):δ11.16(br s,1H),8.70(s,1H),8.33(s,1H),8.05(d,J=7.4Hz,2H),7.69-7.61(m,1H),7.60-7.52(m,2H),7.25-7.12(m,5H),7.05(t,J=8.9Hz,4H),6.78(dd,J=8.9,3.1Hz,4H),4.79(d,J=4.0Hz,1H),4.51-4.28(m,2H),3.81(d,J=4.0Hz,1H),3.70(s,6H),3.10(dd,J=9.8,4.9Hz,1H),2.89(dd,J=9.7,5.1Hz,1H),2.37-2.23(m,1H),1.03(d,J=6.3Hz,3H).LC-MS:C38H37N5O5,分子量643.2,644.2(M+H).(9) Compound 9 (3.00 g, 3.96 mmol, 1.0 equiv) was dissolved in tetrahydrofuran, and pyridinium hydrofluoride (2.26 g, 79.2 mmol, 2.1 mL, 20.0 equiv) and imidazole (10.8 g, 158.0 mmol, 40.0 equiv) were added under nitrogen protection and ice bath. The temperature was raised to room temperature and stirring was continued for 2 hours. LCMS detection showed that compound 9 disappeared. 50 mL of ethyl acetate was added, and the mixture was washed with 100 mL of sodium bicarbonate solution and 50 mL of saturated brine, dried and filtered, and the filtrate was concentrated. The crude product was separated and purified by silica gel column chromatography (gradient elution: petroleum ether/ethyl acetate = 10/1 to 0/1) to obtain a light yellow oil compound 10 (2.44 g, 3.79 mmol, 96% yield). 1 H NMR (400 MHz, DMSO-d 6 ): δ11.16 (br s,1H),8.70(s,1H),8.33(s,1H),8.05(d,J=7.4Hz,2H),7.69-7.61(m,1H),7.60-7.52(m,2H),7.25-7.12(m,5H),7.05(t,J=8.9Hz,4H),6.78(dd,J=8 .9,3.1Hz,4H),4.79(d,J =4.0Hz,1H),4.51-4.28(m,2H),3.81(d,J=4.0Hz,1H),3.70(s,6H),3.10(dd,J=9.8,4.9Hz,1H),2.89(dd,J=9.7,5.1Hz,1H),2.37-2.23(m,1H),1.03(d , J=6.3Hz, 3H). LC-MS: C 38 H 37 N 5 O 5 , molecular weight 643.2, 644.2 (M+H).
(10)将化合物10(1.5g,2.33mmol,1.0equiv)置于洁净干燥反应瓶中,氮气保护下加入4mL乙腈,升温至35-40℃蒸除乙腈,重复一次此操作,以除去化合物10中水分。室温下向上述反应瓶中加入15mL无水二氯甲烷。再加入化合物11-1(1.05g,3.5mmol,1.11mL,1.5equiv)与4,5-二氰咪唑(358mg,3.03mmol,1.3equiv),室温下继续搅拌一小时。TLC检测显示化合物10消失。加入30mL二氯甲烷,用碳酸氢钠溶液(50mLx2),饱和食盐水(50mL)洗涤,干燥有机相,过滤并浓缩滤液,所得粗产品溶于50mL甲基叔丁基醚中,加入100mL 1%的氢氧化钠水溶液,搅拌半小时。静置分层收集有机相,有机相用饱和食盐水洗涤,干燥后过滤浓缩,粗产品经C18反相柱制备得到淡黄色产物SA000001(1.1g,1.3mmol,56%收率)。1H NMR(400MHz,CD3CN):δ9.33(br s,1H),8.61(br s,1H),7.99(d,J=11.0Hz,3H),7.67-7.60(m,1H),7.59-7.49(m,2H),7.32-6.99(m,9H),6.75(td,J=9.2,6.5Hz,4H),4.50-4.38(m,1H),4.36-4.13(m,2H),3.72(dd,J=4.8,1.5Hz,6H),3.66-3.45(m,3H),3.25(td,J=9.6,5.4Hz,1H),3.01(ddd,J=17.9,10.0,5.8Hz,1H),2.62(t,J=5.9Hz,1H),2.53(t,J=5.9Hz,1H),1.32-1.22(m,4H),1.17-1.05(m,12H).31P NMR(DMSO-d6,162MHz):δppm 147.7,146.8.LCMS:C47H54N7O6P,分子量843.3,844.5(M+H).(10) Compound 10 (1.5 g, 2.33 mmol, 1.0 equiv) was placed in a clean dry reaction bottle, 4 mL of acetonitrile was added under nitrogen protection, the temperature was raised to 35-40 °C to evaporate the acetonitrile, and this operation was repeated once to remove the water in compound 10. 15 mL of anhydrous dichloromethane was added to the above reaction bottle at room temperature. Compound 11-1 (1.05 g, 3.5 mmol, 1.11 mL, 1.5 equiv) and 4,5-dicyanoimidazole (358 mg, 3.03 mmol, 1.3 equiv) were added, and stirring was continued at room temperature for one hour. TLC detection showed that compound 10 disappeared. 30 mL of dichloromethane was added, and the mixture was washed with sodium bicarbonate solution (50 mL x 2) and saturated brine (50 mL). The organic phase was dried, filtered and the filtrate was concentrated. The crude product was dissolved in 50 mL of methyl tert-butyl ether, and 100 mL of 1% sodium hydroxide aqueous solution was added and stirred for half an hour. The organic phase was collected after standing and stratified, washed with saturated brine, dried, filtered and concentrated, and the crude product was purified by C18 reverse phase column to obtain a light yellow product SA000001 (1.1 g, 1.3 mmol, 56% yield). 1 H NMR (400 MHz, CD 3 CN): δ9.33 (br s, 1H), 8.61 (br s, 1H), 7.99 (d, J = 11.0 Hz, 3H), 7.67-7.60 (m, 1H), 7.59-7.49 (m, 2H), 7.32-6.99 (m, 9H), 6.75 (td, J = 9.2, 6.5 Hz, 4H), 4.50-4.38 (m, 1H), 4.36-4.13 (m, 2H), 3.72 (dd, J = 4.8, 1.5H z,6H),3.66-3.45(m,3H),3.25(td,J=9.6,5.4Hz,1H),3.01(ddd,J=17.9,10.0,5.8Hz,1H),2.62(t,J=5.9Hz,1H),2.53(t,J=5.9Hz,1H),1.32-1.22(m,4 H), 1.17-1.05 (m, 12H). 31 P NMR (DMSO-d 6 , 162MHz): δppm 147.7, 146.8. LCMS: C 47 H 54 N 7 O 6 P, molecular weight 843.3, 844.5 (M+H).
实施例8缀合分子SIN的合成Example 8 Synthesis of conjugated molecule SIN
SIN(即化合物I-1-1)的合成路线如下图所示:
The synthesis route of SIN (i.e. compound I-1-1) is shown in the figure below:
(1)中间体1-1的制备(1) Preparation of intermediate 1-1
将化合物1-Cbz-4-羟甲基哌啶(市售,购买于上海泰坦科技股份有限公司)(40.1mmol,10.0g)置于洁净干燥反应瓶中,加入100mL吡啶,室温下加入4,4'-双甲氧基三苯甲基氯(1.2equiv,48.1mmol,16.3g),随后室温继续搅拌1小时。反应后向反应液中加入150mL乙酸乙酯,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(石油醚/乙酸乙酯=20/1-4/1),得到淡黄色油状物化合物1-1(21.7g,39.3mmol,98%收率)。Compound 1-Cbz-4-hydroxymethylpiperidine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (40.1mmol, 10.0g) was placed in a clean dry reaction bottle, 100mL of pyridine was added, and 4,4'-bismethoxytrityl chloride (1.2equiv, 48.1mmol, 16.3g) was added at room temperature, and then stirred at room temperature for 1 hour. After the reaction, 150mL of ethyl acetate was added to the reaction solution, and washed with 150mL of saturated sodium bicarbonate solution and 150mL of saturated brine, the organic phase was dried, filtered and concentrated, and the crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate = 20/1-4/1) to obtain a light yellow oil compound 1-1 (21.7g, 39.3mmol, 98% yield).
化合物1-1分子式:C35H37O5N,分子量:551.3,LC-MS实测:552.4(M+H).1H NMR(400MHz,DMSO-d6):δ7.31–7.22(m,9H),7.17(d,J=8.6Hz,5H),6.82(d,J=8.7Hz,4H),4.99(s,2H),3.93(d,J=12.6Hz,2H),3.66(s,6H),2.78–2.61(m,4H),2.44(s,1H),1.62(d,J=12.6Hz,2H),0.97(qd,J=12.7,3.6Hz,2H).Compound 1-1, molecular formula: C 35 H 37 O 5 N, molecular weight: 551.3, LC-MS measured: 552.4 (M+H). 1 H NMR (400 MHz, DMSO-d6): δ7.31–7.22 (m, 9H), 7.17 (d, J=8.6 Hz, 5H), 6.82 (d, J=8.7 Hz, 4H), 4.99 (s, 2H), 3.93 (d, J=12.6 Hz, 2H), 3.66 (s, 6H), 2.78–2.61 (m, 4H), 2.44 (s, 1H), 1.62 (d, J=12.6 Hz, 2H), 0.97 (qd, J=12.7, 3.6 Hz, 2H).
(2)1.2中间体1-2的制备(2)1.2 Preparation of intermediate 1-2
将化合物1-1(39.3mmol,21.7g)置于洁净干燥反应瓶中,加入150mL甲醇,室温氢气下加入钯碳(湿基,10%Pd/C)(10%wt,2.2g),随后室温继续搅拌12小时。反应后过滤除去钯碳,滤液浓缩,得到粗产品白色固体化合物1-2(16.1g,38.5mmol,98%收率),未纯化直接投入下一步反应。化合物1-2分子式:C27H31O3N,分子量:417.2,LC-MS实测:418.4(M+H).Compound 1-1 (39.3mmol, 21.7g) was placed in a clean dry reaction bottle, 150mL of methanol was added, palladium carbon (wet basis, 10% Pd/C) (10% wt, 2.2g) was added under hydrogen at room temperature, and then stirring was continued at room temperature for 12 hours. After the reaction, palladium carbon was removed by filtration, and the filtrate was concentrated to obtain a crude product of white solid compound 1-2 (16.1g, 38.5mmol, 98% yield), which was directly used in the next step without purification. Compound 1-2 molecular formula: C 27 H 31 O 3 N, molecular weight: 417.2, LC-MS measured: 418.4 (M+H).
(3)1.3中间体1-3的制备(3)1.3 Preparation of intermediate 1-3
将化合物N-苄氧羰基-L-丝氨酸(市售,购买于上海泰坦科技股份有限公司)(35.0mmol,8.4g)置于洁净干燥反应瓶中,加入100mL二氯甲烷,室温下加入苯并三氮唑-N,N,N',N'-四甲基脲六氟磷酸盐(1.5equiv,52.5mmol,19.9g)、化合物1-2(1.1equiv,38.5mmol,16.1g)和N,N-二异丙基乙胺(3.0equiv,105.0mmol,13.5g),随后室温搅拌1小时。反应后向反应液中加入150mL二氯甲烷,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(石油醚/乙酸乙酯=10/1-2/3),得到白色固体化合物1-3(14.9g,23.5mmol,67%收率)。化合物1-3分子式:C38H42O7N2,分子量:638.3,LC-MS实测:639.4(M+H).1H NMR(400MHz,DMSO-d6):δ7.42–7.26(m,9H),7.23(d,J=8.7Hz,5H),6.89(d,J=8.8Hz,4H),5.03–4.96(m,2H),4.79(dt,J=25.7,5.4Hz,1H),4.55–4.48(m,1H),4.36 (d,J=10.7Hz,1H),4.01(dt,J=24.8,8.8Hz,1H),3.73(s,6H),3.56(ddd,J=18.7,12.7,5.8Hz,1H),3.43–3.38(m,1H),3.00(t,J=12.3Hz,1H),2.85–2.79(m,2H),2.69(s,1H),2.56(d,J=10.2Hz,1H),1.88(d,J=21.0Hz,1H),1.69(dd,J=36.5,11.3Hz,2H),1.19–0.98(m,2H).The compound N-benzyloxycarbonyl-L-serine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (35.0 mmol, 8.4 g) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 52.5 mmol, 19.9 g), compound 1-2 (1.1 equiv, 38.5 mmol, 16.1 g) and N,N-diisopropylethylamine (3.0 equiv, 105.0 mmol, 13.5 g) were added at room temperature, followed by stirring at room temperature for 1 hour. After the reaction, 150 mL of dichloromethane was added to the reaction solution, and the mixture was washed with 150 mL of saturated sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and concentrated. The crude product was separated and purified by silica gel column chromatography (petroleum ether/ethyl acetate = 10/1-2/3) to give white solid compound 1-3 (14.9 g, 23.5 mmol, 67% yield). Molecular formula of compound 1-3: C 38 H 42 O 7 N 2 , molecular weight: 638.3, LC-MS measured: 639.4 (M+H). 1 H NMR (400MHz, DMSO-d6): δ7.42–7.26 (m, 9H), 7.23 (d, J=8.7 Hz, 5H), 6.89 (d, J=8.8 Hz, 4H), 5.03–4.96 (m, 2H), 4.79 (dt, J=25.7, 5.4 Hz, 1H), 4.55–4.48 (m, 1H), 4.36 (d,J=10.7Hz,1H),4.01(dt,J=24.8,8.8Hz,1H),3.73(s,6H),3.56(ddd,J=18.7,12.7,5.8Hz,1H),3.43–3.38(m,1H),3.00(t,J=12.3Hz,1H),2.85–2.7 9(m,2H),2.69(s,1H),2.56(d,J=10.2Hz,1H),1.88(d,J=21.0Hz,1H),1.69(dd,J=36.5,11.3Hz,2H),1.19–0.98(m,2H).
(4)中间体1-4的制备(4) Preparation of Intermediate 1-4
将化合物1-3(23.5mmol,14.9g)置于洁净干燥反应瓶中,加入100mL甲醇,室温氢气下加入钯碳(湿基,10%Pd/C)(10%wt,1.5g),随后室温继续搅拌12小时。反应后过滤除去钯碳,滤液浓缩,得到粗产品白色固体化合物1-4(11.6g,23.0mmol,98%收率),未纯化直接投入下一步反应。化合物1-4分子式:C30H36O5N2,分子量:504.2,LC-MS实测:527.6(M+Na).1H NMR(400MHz,DMSO-d6):δ7.36(d,J=7.5Hz,2H),7.31(t,J=7.6Hz,2H),7.23(d,J=8.8Hz,5H),6.89(d,J=8.8Hz,4H),4.39(t,J=12.2Hz,1H),3.97(d,J=13.0Hz,1H),3.73(s,6H),3.69(t,J=6.3Hz,1H),3.43–3.36(m,5H),3.01–2.92(m,2H),2.83(d,J=6.1Hz,2H),1.84(dd,J=11.6,8.1Hz,1H),1.72(d,J=12.0Hz,2H),1.17–0.91(m,2H).Compound 1-3 (23.5mmol, 14.9g) was placed in a clean dry reaction bottle, 100mL of methanol was added, palladium carbon (wet basis, 10% Pd/C) (10% wt, 1.5g) was added under hydrogen at room temperature, and then stirring was continued at room temperature for 12 hours. After the reaction, palladium carbon was removed by filtration, and the filtrate was concentrated to obtain a crude product, white solid compound 1-4 (11.6g, 23.0mmol, 98% yield), which was directly used for the next step without purification. Compound 1-4 molecular formula: C 30 H 36 O 5 N 2 , molecular weight: 504.2, LC-MS measured: 527.6 (M+Na). 1 H NMR (400MHz, DMSO-d6): δ7.36(d,J=7.5Hz,2H),7.31(t,J=7.6Hz,2H),7.23(d,J=8.8Hz,5H),6.89(d,J=8.8Hz,4H),4.39(t,J=12.2Hz,1H),3.97(d,J=13.0Hz, 1H),3. 73(s,6H),3.69(t,J=6.3Hz,1H),3.43–3.36(m,5H),3.01–2.92(m,2H),2.83(d,J=6.1Hz,2H),1.84(dd,J=11.6,8.1Hz,1H),1.72(d,J=12.0Hz,2H),1. 17–0.91(m,2H).
(5)中间体1-5的制备(5) Preparation of Intermediate 1-5
将化合物5-(((2R,3R,4R,5R,6R)-3-乙酰氨基-4,5-二乙酰氧基-6-(乙酰氧基甲基)四氢-2H-吡喃-2-基)氧基)戊酸(市售,购买于诺甘林生物医药科技(苏州)有限公司)(9.3g,20.9mmol)置于洁净干燥反应瓶中,加入100mL二氯甲烷,室温下加入苯并三氮唑-N,N,N',N'-四甲基脲六氟磷酸盐(1.5equiv,31.3mmol,11.9g),搅拌十分钟,随后向反应体系中加入化合物1-4(1.1equiv,23.0mmol,11.6g)和N,N-二异丙基乙胺(3.0equiv,62.7mmol,8.1g),随后室温继续搅拌1小时。反应后向反应液中加入150mL二氯甲烷,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(二氯甲烷/甲醇=50/1-20/1),得到白色固体化合物1-5(15.4g,16.5mmol,79%收率)。化合物1-5分子式:C49H63O13N5,分子量:933.4,LC-MS实测:932.5(M-H).1H NMR(400MHz,DMSO-d6):δ7.93(dd,J=24.8,8.3Hz,1H),7.80(dd,J=8.8,5.3Hz,1H),7.36(d,J=7.8Hz,2H),7.31(t,J=7.6Hz,2H),7.23(d,J=8.7Hz,5H),6.89(d,J=8.8Hz,4H),5.21(d,J=3.3Hz,1H),4.97(dd,J=11.2,3.4Hz,1H),4.79(d,J=4.7Hz,1H),4.47(dd,J=8.0,3.6Hz,1H),4.37(d,J=12.7Hz,1H),4.05–4.00(m,5H),3.87(dd,J=20.2,10.3Hz,1H),3.73(s,6H),3.57–3.50(m,1H),3.14(qd,J=7.3,4.3Hz,1H),2.99(t,J=14.2Hz,1H),2.82(d,J=3.8Hz,2H),2.10(s,5H),1.99–1.98(m,6H),1.89(s,3H),1.76(d,J=9.2Hz,4H),1.25(dd,J=12.6,6.5Hz,5H),1.17(t,J=7.1Hz,3H).Compound 5-(((2R,3R,4R,5R,6R)-3-acetylamino-4,5-diacetoxy-6-(acetoxymethyl)tetrahydro-2H-pyran-2-yl)oxy)pentanoic acid (commercially available, purchased from Noganlin Biopharmaceutical Technology (Suzhou) Co., Ltd.) (9.3 g, 20.9 mmol) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 31.3 mmol, 11.9 g) was added at room temperature and stirred for ten minutes. Subsequently, compound 1-4 (1.1 equiv, 23.0 mmol, 11.6 g) and N,N-diisopropylethylamine (3.0 equiv, 62.7 mmol, 8.1 g) were added to the reaction system, and then stirring was continued at room temperature for 1 hour. After the reaction, 150 mL of dichloromethane was added to the reaction solution, and the mixture was washed with 150 mL of saturated sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and concentrated. The crude product was separated and purified by silica gel column chromatography (dichloromethane/methanol = 50/1-20/1) to obtain white solid compound 1-5 (15.4 g, 16.5 mmol, 79% yield). Compound 1-5 molecular formula: C 49 H 63 O 13 N 5 , molecular weight: 933.4, LC-MS measured: 932.5 (MH). 1 H NMR (400MHz, DMSO-d6): δ7.93(dd,J=24.8,8.3Hz,1H),7.80(dd,J=8.8,5.3Hz,1H),7.36(d,J=7.8Hz,2H),7.31(t,J=7.6Hz,2H),7.23(d,J=8.7Hz,5H),6.89(d, J=8.8Hz,4H),5.21(d,J=3.3Hz,1H),4.97(dd,J=11.2,3.4Hz,1H),4.79(d,J=4.7Hz,1H),4.47(dd,J=8.0,3.6Hz,1H),4.37(d,J=1 2.7Hz,1H),4.05–4.00(m,5H),3.87(dd,J=20.2,10.3Hz,1H),3.73(s,6H),3.57–3.50(m,1H),3.14(qd,J=7.3,4.3Hz,1H),2.99(t,J=14.2Hz,1H),2.82 (d,J=3.8Hz,2H),2.10(s,5H),1.99–1.98(m,6H),1.89(s,3H),1.76(d,J=9.2Hz,4H),1.25(dd,J=12.6,6.5Hz,5H),1.17(t,J=7.1Hz,3H).
(6)化合物I-1-1的制备(6) Preparation of Compound I-1-1
将化合物1-5(16.5mmol,15.4g)置于洁净干燥反应瓶中,加入50mL无水二氯甲烷。室温氩气保护下加入化合物2-氰乙基N,N,N’,N’-四异丙基亚磷酰二胺(2.0equiv,33.0mmol,9.9g)和4,5-二氰咪唑(1.5equiv,24.7mmol,2.9g),室温下继续搅拌一小时。反应后向反应液中加入50mL二氯甲烷,并用100mL饱和碳酸氢钠溶液洗涤,干燥有机相,过滤并浓缩,所得粗产品经C18反相柱(规格:30μm;市售,购买于上海博蕴生物科技有限公司)(MeCN:H2O=75%:25%)制备得到白色固体I-1-1(11.6g,10.2mmol,62%收率)。化合物I-1-1分子式:C58H80O15N6P,分子量:1133.5,LC-MS实测:1132.4(M-H).1H NMR(400MHz,DMSO-d6):δ8.22–8.04(m,1H),7.79(t,J=8.2Hz,1H),7.35(d,J=2.3Hz,2H),7.30(t,J=7.6Hz,2H),7.22(d,J=8.5Hz,5H),6.88(d,J=8.7Hz,4H),5.21(d,J=3.3Hz,1H),4.93(ddd,J=18.3,11.7,4.3Hz,2H),4.49–4.45(m,1H),4.40–4.30(m,1H),3.99(p,J=8.9Hz,4H),3.85(dt,J=13.0,6.6Hz,2H),3.73(s,6H),3.71(s,2H),3.68–3.62(m,2H),3.49(ddd,J=15.7,13.6,6.6Hz,2H),3.42–3.36(m,1H),3.00(t,J=14.4Hz,1H),2.82–2.79(m,2H),2.77–2.72(m,1H),2.69–2.64(m,1H),2.60–2.54(m,1H),2.10(s,5H),1.98(dd,J=8.7,3.5Hz,3H),1.89(s,4H),1.77–1.63(m,5H),1.50–1.37(m,4H),1.19–1.10(m,12H).31P NMR(162MHz,DMSO-d6):δ147.90,147.30.Compound 1-5 (16.5 mmol, 15.4 g) was placed in a clean dry reaction bottle and 50 mL of anhydrous dichloromethane was added. Compound 2-cyanoethyl N,N,N',N'-tetraisopropylphosphorodiamidite (2.0 equiv, 33.0 mmol, 9.9 g) and 4,5-dicyanoimidazole (1.5 equiv, 24.7 mmol, 2.9 g) were added under argon protection at room temperature and stirred for one hour at room temperature. After the reaction, 50 mL of dichloromethane was added to the reaction solution and washed with 100 mL of saturated sodium bicarbonate solution. The organic phase was dried, filtered and concentrated. The crude product was purified by C18 reverse phase column (specification: 30 μm; Commercially available, purchased from Shanghai Boyun Biotechnology Co., Ltd.) (MeCN:H2O=75%:25%) to prepare white solid I-1-1 (11.6 g, 10.2 mmol, 62% yield). Compound I-1-1 molecular formula: C 58 H 80 O 15 N 6 P, molecular weight: 1133.5, LC-MS measured: 1132.4 (MH). 1 H NMR (400MHz, DMSO-d6): δ8.22–8.04(m,1H),7.79(t,J=8.2Hz,1H),7.35(d,J=2.3Hz,2H),7.30(t,J=7.6Hz,2H),7.22(d,J=8.5Hz,5H),6.88(d,J=8.7Hz,4H), 5.21(d,J=3.3Hz,1H),4.93(ddd,J=18.3,11.7,4.3Hz,2H),4.49–4.45(m,1H ),4.40–4.30(m,1H),3.99(p,J=8.9Hz,4H),3.85(dt,J=13.0,6.6Hz,2H),3.7 3 (s,6H),3.71(s,2H),3.68–3.62(m,2H),3.49(ddd,J=15.7,13.6,6.6Hz,2H),3.42–3.36(m,1H),3.00(t,J=14.4Hz,1H),2.82–2.79(m,2H),2.77–2.7 2(m,1H),2.69–2.64(m,1H),2.60–2.54(m,1H),2.10(s,5H),1.98(dd,J=8.7,3.5Hz,3H),1.89(s,4H),1.77–1.63(m,5H),1.50–1.37(m,4H),1.19–1. 10(m,12H).31P NMR (162MHz, DMSO-d6): δ147.90,147.30.
实施例9小鼠体内测试缀合物的活性Example 9 Testing the activity of the conjugate in mice
选择6-8周龄的SPF级雌性C57BL/6J小鼠,小鼠的体重为20±2g。给药前对上述小鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组小鼠给予缀合物,溶媒组小 鼠给予磷酸盐缓冲盐水(PBS),按照每只小鼠给予1mg/kg缀合物的剂量进行皮下给药。给药后7天和21天,颈椎脱臼牺牲动物,取肝组织,按照与实施例5相同的方法检测C5 mRNA的表达水平。Select 6-8 week old SPF grade female C57BL/6J mice with a body weight of 20±2g. Weigh the mice and observe their condition before administration. Select animals with uniform body weight and normal condition and randomly divide them into groups, with 4 mice in each group. The mice in the experimental group were given the conjugate, and the mice in the vehicle group were given The mice were given phosphate buffered saline (PBS) and subcutaneously administered with a dose of 1 mg/kg of the conjugate per mouse. 7 and 21 days after administration, the animals were sacrificed by cervical dislocation, and liver tissues were obtained to detect the expression level of C5 mRNA in the same manner as in Example 5.
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表11,缀合物分别以L-96或者实施例8制备得到的缀合分子为起始物,按照实施例4的方法制备得到,其中Ugo、Cgo、Ago的合成方法见实施例7。使用受试缀合物后,小鼠肝脏中C5 mRNA的剩余表达水平结果见图3。如图3所示,与阳性化合物SD003317相比,缀合物SD004001和SD004071表现出了更好的抑制活性。The results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%). The conjugate sequences used for injection are shown in Table 11. The conjugates are prepared according to the method of Example 4 using L-96 or the conjugate molecules prepared in Example 8 as starting materials, respectively. The synthesis methods of Ugo, Cgo, and Ago are shown in Example 7. After using the tested conjugates, the residual expression level of C5 mRNA in mouse liver is shown in Figure 3. As shown in Figure 3, compared with the positive compound SD003317, the conjugates SD004001 and SD004071 showed better inhibitory activity.
表11

Table 11

其中,SD004071的裸序列的正义链的序列为AUAACUCACUAUAAUUACA(SEQ ID NO:169),反义链的序列为UGUAAUUAUAGUGAGUUAUUU(SEQ ID NO:170)。Among them, the sequence of the positive chain of the naked sequence of SD004071 is AUAACUCACUAUAAUUACA (SEQ ID NO: 169), and the sequence of the antisense chain is UGUAAUUAUAGUGAGUUAUUU (SEQ ID NO: 170).
实施例10大鼠体内测试缀合物的活性Example 10 Activity of the conjugate tested in rats
选择6-8周龄的SD雌性SPF级大鼠,大鼠的体重为200±2g。给药前对上述大鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组大鼠给予缀合物,溶媒组大鼠给予磷酸盐缓冲盐水(PBS),按照每只大鼠给予2.5mg/kg缀合物的剂量进行皮下给药。给药后7天和21天,颈椎脱臼牺牲动物,取肝组织,按照与实施例6相同的方法测量C5基因的表达水平。6-8 week old SD female SPF rats were selected, and the weight of the rats was 200 ± 2g. The rats were weighed and observed before administration, and animals with uniform weight and normal state were randomly divided into groups of 4, wherein the rats in the experimental group were given the conjugate, and the rats in the vehicle group were given phosphate buffered saline (PBS), and each rat was given a dose of 2.5 mg/kg of the conjugate for subcutaneous administration. 7 days and 21 days after administration, the animals were sacrificed by cervical dislocation, liver tissue was taken, and the expression level of the C5 gene was measured by the same method as in Example 6.
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表12,缀合物按照实施例4的方法制备得到。使用本发明的受试缀合物后,大鼠肝脏中C5 mRNA剩余表达水平结果见图4,如图4所示,与阳性化合物SD003317相比,缀合物SD003988表现出了更好的抑制活性。The results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%). The conjugate sequence for injection is shown in Table 12, and the conjugate is prepared according to the method of Example 4. After using the tested conjugate of the present invention, the residual expression level of C5 mRNA in rat liver is shown in Figure 4. As shown in Figure 4, compared with the positive compound SD003317, the conjugate SD003988 showed better inhibitory activity.
表12
Table 12
其中,SD003988的裸序列的正义链的序列为CUAUGACAAUGGAUUUCUA(SEQ ID NO:171),反义链的序列为UAGAAAUCCAUUGUCAUAGGU(SEQ ID NO:172)。Among them, the sequence of the positive chain of the naked sequence of SD003988 is CUAUGACAAUGGAUUUCUA (SEQ ID NO: 171), and the sequence of the antisense chain is UAGAAAUCCAUUGUCAUAGGU (SEQ ID NO: 172).
实施例11大鼠体内测试缀合物的活性Example 11 Activity of the conjugate tested in rats
选择6-8周龄的SD雌性SPF级大鼠,大鼠的体重为200±2g。给药前对上述大鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组大鼠给予缀合物,溶媒组大鼠给予磷酸盐缓冲盐水(PBS),按照每只大鼠给予1mg/kg缀合物的剂量进行皮下给药。给药后7天和21天,颈椎脱臼牺牲动物,取肝组织,按照与实施例6相同的方法测量C5基因的表达水平。6-8 week old SD female SPF rats were selected, and the weight of the rats was 200 ± 2g. The rats were weighed and observed before administration, and animals with uniform weight and normal state were randomly divided into groups of 4, wherein the rats in the experimental group were given the conjugate, and the rats in the vehicle group were given phosphate buffered saline (PBS), and the conjugate was administered subcutaneously at a dose of 1 mg/kg per rat. 7 days and 21 days after administration, the animals were sacrificed by cervical dislocation, liver tissue was taken, and the expression level of the C5 gene was measured in the same manner as in Example 6.
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表13,缀合物按照实施例4的方法制备得到。使用本发明的受试缀合物后,C5 mRNA剩余表达水平结果见图5。如图5所示,与阳性化合物SD003317相比,缀合物SD004072表现出了更好的抑制活性。The results are expressed as the residual expression level of the siRNA administration group compared to the vehicle group (the vehicle group is 100%). The conjugate sequence for injection is shown in Table 13, and the conjugate is prepared according to the method of Example 4. After using the tested conjugate of the present invention, the results of the residual expression level of C5 mRNA are shown in Figure 5. As shown in Figure 5, compared with the positive compound SD003317, the conjugate SD004072 showed better inhibitory activity.
表13

Table 13

实施例12食蟹猴体内活性测试Example 12 In vivo activity test in cynomolgus monkeys
在本实施例中,选取siRNA进行缀合合成,在食蟹猴中进一步评估siRNA缀合物的体内活性。选取体重均一、状态无异常的动物进行随机分组,每组3只,分别给予表14中缀合物,缀合物按照实施例4的方法制备得到。按照每只猴子给予5mg/kg的剂量进行皮下给药。在给药前-13天,-7天,0天及给药后7天,14天,21天,28天,35天和44天分别进行采血收集血清。血清中C5蛋白水平通过Elisa的方法检测,与给药前-7和0天的血清中C5的平均水平相比,剩余百分比的结果如图6所示,SD004072在食蟹猴体内的活性要明显优于SD004073。In this example, siRNA was selected for conjugation synthesis, and the in vivo activity of the siRNA conjugate was further evaluated in cynomolgus monkeys. Animals with uniform body weight and normal state were randomly divided into groups, 3 in each group, and the conjugates in Table 14 were given respectively, and the conjugates were prepared according to the method of Example 4. Subcutaneous administration was performed according to a dose of 5 mg/kg given to each monkey. Blood was collected and serum was collected on -13 days, -7 days, 0 days before administration, and 7 days, 14 days, 21 days, 28 days, 35 days and 44 days after administration. The C5 protein level in serum was detected by Elisa method. Compared with the average level of C5 in serum on -7 and 0 days before administration, the results of the remaining percentage are shown in Figure 6. The activity of SD004072 in cynomolgus monkeys is significantly better than that of SD004073.
表14
Table 14
实施例13缀合分子SA102的制备Example 13 Preparation of conjugated molecule SA102
(1)中间体1-1的制备
(1) Preparation of intermediate 1-1
将化合物(R)-(+)-N-苄基-3-羟基吡咯烷(市售,购买于上海泰坦科技股份有限公司)(16.9mmol,3.0g)和咪唑(3.0equiv,50.7mmol,3.45g)置于洁净干燥反应瓶中,加入50mL乙腈,室温下缓慢加入叔丁基二甲基氯硅烷(1.3equiv,21.9mmol,3.31g),随后室温继续搅拌12小时。反应后向反应液中加入100mL乙酸乙酯,并用100mL饱和碳酸氢钠溶液和100mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:石油醚/乙酸乙酯=20/1-5/1),得到无色油状物化合物1-1(4.9g,16.8mmol,99%收率)。化合物1-1分子式:C17H29ONSi,分子量:291.2,LC-MS找到292.4(M+H).Compound (R)-(+)-N-benzyl-3-hydroxypyrrolidine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (16.9 mmol, 3.0 g) and imidazole (3.0 equiv, 50.7 mmol, 3.45 g) were placed in a clean dry reaction bottle, 50 mL of acetonitrile was added, tert-butyldimethylsilyl chloride (1.3 equiv, 21.9 mmol, 3.31 g) was slowly added at room temperature, and then stirred at room temperature for 12 hours. After the reaction, 100 mL of ethyl acetate was added to the reaction solution, and washed with 100 mL of saturated sodium bicarbonate solution and 100 mL of saturated brine, the organic phase was dried, filtered and concentrated, and the crude product was separated and purified by silica gel column chromatography (gradient elution: petroleum ether/ethyl acetate = 20/1-5/1) to obtain a colorless oil compound 1-1 (4.9 g, 16.8 mmol, 99% yield). Compound 1-1 molecular formula: C 17 H 29 ONSi, molecular weight: 291.2, LC-MS found 292.4 (M+H).
(2)中间体1-2的制备
(2) Preparation of intermediate 1-2
将化合物1-1(16.8mmol,4.9g)置于洁净干燥反应瓶中,加入100mL甲醇,室温氢气下加入钯碳(湿基,10%Pd/C)(10%wt,490.0mg),随后室温继续搅拌12小时。反应后过滤除去钯碳,滤液浓缩,得到粗产 品白色固体化合物1-2(3.31g,16.5mmol,98%收率),未纯化直接投入下一步反应。化合物1-2分子式:C10H23ONSi,分子量:201.1,LC-MS找到202.3(M+H).Compound 1-1 (16.8 mmol, 4.9 g) was placed in a clean dry reaction bottle, 100 mL of methanol was added, palladium carbon (wet basis, 10% Pd/C) (10% wt, 490.0 mg) was added under hydrogen at room temperature, and then stirred at room temperature for 12 hours. After the reaction, palladium carbon was removed by filtration, and the filtrate was concentrated to obtain a crude product. The white solid compound 1-2 (3.31 g, 16.5 mmol, 98% yield) was directly used in the next step without purification. Compound 1-2 molecular formula: C 10 H 23 ONSi, molecular weight: 201.1, LC-MS found 202.3 (M+H).
(3)中间体1-3的制备
(3) Preparation of intermediate 1-3
将化合物N-苄氧羰基-L-丝氨酸(市售,购买于上海泰坦科技股份有限公司)(15.0mmol,3.58g)置于洁净干燥反应瓶中,加入100mL二氯甲烷,室温下加入苯并三氮唑-N,N,N',N'-四甲基脲六氟磷酸盐(1.5equiv,22.5mmol,8.53g)、化合物1-2(1.1equiv,16.5mmol,3.31g)和N,N-二异丙基乙胺(3.0equiv,45.0mmol,5.78g),随后室温搅拌1小时。反应后向反应液中加入150mL二氯甲烷,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:石油醚/乙酸乙酯=10/1-1/3),得到白色固体化合物1-3(4.5g,10.65mmol,63%两步收率)。化合物1-3分子式:C21H34O5N2Si,分子量:422.2,LC-MS找到423.3(M+H).1H NMR(400MHz,CDCl3):δ7.35–7.29(m,5H),5.96(dd,J=14.3,8.3Hz,1H),5.10(s,2H),4.61–4.40(m,2H),3.85–3.68(m,2H),3.65–3.49(m,2H),3.41(d,J=12.7Hz,1H),3.31(s,1H),1.95(qdd,J=15.0,11.8,5.3Hz,2H),1.77(s,1H),0.86(s,9H),0.06(d,J=3.1Hz,6H).The compound N-benzyloxycarbonyl-L-serine (commercially available, purchased from Shanghai Titan Technology Co., Ltd.) (15.0 mmol, 3.58 g) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 22.5 mmol, 8.53 g), compound 1-2 (1.1 equiv, 16.5 mmol, 3.31 g) and N,N-diisopropylethylamine (3.0 equiv, 45.0 mmol, 5.78 g) were added at room temperature, followed by stirring at room temperature for 1 hour. After the reaction, 150 mL of dichloromethane was added to the reaction solution, and the mixture was washed with 150 mL of saturated sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and concentrated. The crude product was separated and purified by silica gel column chromatography (gradient elution: petroleum ether/ethyl acetate = 10/1-1/3) to obtain white solid compound 1-3 (4.5 g, 10.65 mmol, 63% two-step yield). Compound 1-3 molecular formula: C 21 H 34 O 5 N 2 Si, molecular weight: 422.2, LC-MS found 423.3 (M+H). 1 H NMR (400 MHz, CDCl 3 ): δ7.35–7.29(m,5H),5.96(dd,J=14.3,8.3Hz,1H),5.10(s,2H),4.61–4.40(m,2H),3.85–3.68(m,2H),3.65–3.49(m,2H),3.41(d,J=12.7Hz,1H),3. 31(s,1H),1.95(qdd,J=15.0,11.8,5.3Hz,2H),1.77(s,1H),0.86(s,9H),0.06(d,J=3.1Hz,6H).
(4)中间体1-4的制备
(4) Preparation of Intermediate 1-4
将化合物1-3(10.65mmol,4.5g)置于洁净干燥反应瓶中,加入100mL吡啶,室温下加入4,4'-双甲氧基三苯甲基氯(1.2equiv,12.78mmol,4.32g),随后室温继续搅拌12小时。反应后向反应液中加入150mL乙酸乙酯,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:石油醚/乙酸乙酯=20/1-1/1),得到淡黄色油状物化合物1-4(7.56g,10.43mmol,98%收率)。化合物1-4分子式:C42H52O7N2Si,分子量:724.3,LC-MS找到747.4(M+Na).1H NMR(400MHz,CDCl3):δ7.35–7.31(m,1H),7.28(d,J=4.7Hz,4H),7.27–7.23(m,2H),7.23–7.14(m,5H),7.13–7.11(m,2H),6.80–6.78(m,1H),6.76(dd,J=7.7,5.4Hz,4H),5.72(dd,J=22.7,8.3Hz,1H),5.08–4.99(m,2H),4.69–4.59(m,1H),4.35–4.30(m,1H),3.73(dd,J=4.5,3.7Hz,6H),3.65–3.44(m,2H),3.36–3.20(m,3H),1.86–1.81(m,1H),1.70(s,1H),0.80(d,J=13.1Hz,9H),-0.02(dd,J=14.9,4.2Hz,6H).Compound 1-3 (10.65mmol, 4.5g) was placed in a clean dry reaction bottle, 100mL of pyridine was added, and 4,4'-bismethoxytrityl chloride (1.2equiv, 12.78mmol, 4.32g) was added at room temperature, and then stirred at room temperature for 12 hours. After the reaction, 150mL of ethyl acetate was added to the reaction solution, and it was washed with 150mL of saturated sodium bicarbonate solution and 150mL of saturated brine, the organic phase was dried, filtered and concentrated, and the crude product was separated and purified by silica gel column chromatography (gradient elution: petroleum ether/ethyl acetate = 20/1-1/1) to obtain a light yellow oil compound 1-4 (7.56g, 10.43mmol, 98% yield). Compound 1-4 molecular formula: C 42 H 52 O 7 N 2 Si, molecular weight: 724.3, LC-MS found 747.4 (M+Na). 1 H NMR (400MHz, CDCl 3 ): δ7.35–7.31(m,1H),7.28(d,J=4.7Hz,4H),7.27–7.23(m,2H),7.23–7.14(m,5H),7.13–7.11(m,2H),6.80–6.78(m,1H),6.76(dd,J=7.7,5.4Hz,4H) ,5.72(dd,J=22.7,8.3Hz,1H),5.08–4.99(m,2 H),4.69–4.59(m,1H),4.35–4.30(m,1H),3.73(dd,J=4.5,3.7Hz,6H),3.65–3.44(m,2H),3.36–3.20(m,3H),1.86–1.81(m,1H),1.70(s,1H),0.80(d ,J=13.1Hz,9H),-0.02(dd,J=14.9,4.2Hz,6H).
(5)中间体1-5的制备
(5) Preparation of Intermediate 1-5
将化合物1-4(10.43mmol,7.56g)置于洁净干燥反应瓶中,加入100mL甲醇,室温氢气下加入钯碳(湿基,10%Pd/C)(10%wt,750.0mg),随后室温继续搅拌12小时。反应后过滤除去钯碳,滤液浓缩,得到 粗产品白色固体化合物1-5(6.0g,10.22mmol,98%收率),未纯化直接投入下一步反应。化合物1-5分子式:C34H46O5N2Si,分子量:590.3,LC-MS找到591.6(M+H).Compound 1-4 (10.43 mmol, 7.56 g) was placed in a clean dry reaction bottle, 100 mL of methanol was added, palladium carbon (wet basis, 10% Pd/C) (10% wt, 750.0 mg) was added under hydrogen at room temperature, and then stirred at room temperature for 12 hours. After the reaction, palladium carbon was removed by filtration, and the filtrate was concentrated to obtain The crude product, white solid compound 1-5 (6.0 g, 10.22 mmol, 98% yield), was directly used in the next step without purification. Compound 1-5 molecular formula: C 34 H 46 O 5 N 2 Si, molecular weight: 590.3, LC-MS found 591.6 (M+H).
(6)中间体1-6的制备
(6) Preparation of Intermediate 1-6
将化合物1-5(10.22mmol,6.0g)置于洁净干燥反应瓶中,加入100mL二氯甲烷,室温下加入4-二甲氨基吡啶(30mol%,3.07mmol,374.6mg)和N,N-二异丙基乙胺(3.0equiv,30.66mmol,3.96g),随后向反应体系中加入己二酸酐(1.5equiv,15.33mmol,1.96g),室温继续搅拌4小时。反应后将反应液直接浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:二氯甲烷/甲醇=50/1-8/1),得到白色固体化合物1-6(5.28g,7.36mmol,72%收率)。化合物1-6分子式:C40H54O8N2Si,分子量:718.3,LC-MS找到717.3(M-H).Compound 1-5 (10.22mmol, 6.0g) was placed in a clean dry reaction bottle, 100mL of dichloromethane was added, 4-dimethylaminopyridine (30mol%, 3.07mmol, 374.6mg) and N,N-diisopropylethylamine (3.0equiv, 30.66mmol, 3.96g) were added at room temperature, and then adipic anhydride (1.5equiv, 15.33mmol, 1.96g) was added to the reaction system, and stirring was continued at room temperature for 4 hours. After the reaction, the reaction solution was directly concentrated, and the crude product was separated and purified by silica gel column chromatography (gradient elution: dichloromethane/methanol = 50/1-8/1) to obtain white solid compound 1-6 (5.28g, 7.36mmol, 72% yield). Compound 1-6 molecular formula: C 40 H 54 O 8 N 2 Si, molecular weight: 718.3, LC-MS found 717.3 (MH).
(7)中间体1-8的制备
(7) Preparation of Intermediate 1-8
将化合物1-6(7.36mmol,5.28g)置于洁净干燥反应瓶中,加入100mL二氯甲烷,室温下加入苯并三氮唑-N,N,N',N'-四甲基脲六氟磷酸盐(1.5equiv,11.04mmol,4.19g)、N,N-二异丙基乙胺(3.0equiv,22.08mmol,2.85g)和化合物1-7(市售,购买于天津药明康德新药开发有限公司)(1.1equiv,8.1mmol,4.31g),室温继续搅拌1小时。反应后向反应液中加入150mL二氯甲烷,并用150mL饱和碳酸氢钠溶液和150mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:二氯甲烷/甲醇=50/1-10/1),得到淡黄色固体化合物1-8(6.75g,6.04mmol,82%收率)。化合物1-8分子式:C58H82O16N4Si,分子量:1118.5,LC-MS找到1117.3(M-H).Compound 1-6 (7.36 mmol, 5.28 g) was placed in a clean dry reaction bottle, 100 mL of dichloromethane was added, and benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate (1.5 equiv, 11.04 mmol, 4.19 g), N,N-diisopropylethylamine (3.0 equiv, 22.08 mmol, 2.85 g) and compound 1-7 (commercially available, purchased from Tianjin WuXi AppTec New Drug Development Co., Ltd.) (1.1 equiv, 8.1 mmol, 4.31 g) were added at room temperature, and stirring was continued at room temperature for 1 hour. After the reaction, 150 mL of dichloromethane was added to the reaction solution, and the mixture was washed with 150 mL of saturated sodium bicarbonate solution and 150 mL of saturated brine. The organic phase was dried, filtered and concentrated. The crude product was separated and purified by silica gel column chromatography (gradient elution: dichloromethane/methanol = 50/1-10/1) to obtain a light yellow solid compound 1-8 (6.75 g, 6.04 mmol, 82% yield). Compound 1-8 molecular formula: C 58 H 82 O 16 N 4 Si, molecular weight: 1118.5, LC-MS found 1117.3 (MH).
(8)中间体1-9的制备
(8) Preparation of Intermediate 1-9
将化合物1-8(6.04mmol,6.75g)置于洁净干燥反应瓶中,加入50mL四氢呋喃,室温下加入四丁基氟化铵(1.0M in THF)(2.0equiv,12.08mmol,12.08mL),随后室温继续搅拌2小时。反应后向反应液中加入100mL乙酸乙酯,并用100mL饱和碳酸氢钠溶液和100mL饱和食盐水洗涤,干燥有机相,过滤并浓缩,所得粗产品硅胶柱层析分离纯化(梯度洗脱:二氯甲烷/甲醇=50/1-8/1),得到淡黄色固体化合物1-9(5.22g,5.19mmol,86%收率)。化合物1-9分子式:C52H68O16N4,分子量:1004.4,LC-MS找到1003.3(M-H).Compound 1-8 (6.04mmol, 6.75g) was placed in a clean dry reaction bottle, 50mL of tetrahydrofuran was added, and tetrabutylammonium fluoride (1.0M in THF) (2.0equiv, 12.08mmol, 12.08mL) was added at room temperature, and then stirred at room temperature for 2 hours. After the reaction, 100mL of ethyl acetate was added to the reaction solution, and it was washed with 100mL of saturated sodium bicarbonate solution and 100mL of saturated brine, the organic phase was dried, filtered and concentrated, and the crude product was separated and purified by silica gel column chromatography (gradient elution: dichloromethane/methanol = 50/1-8/1) to obtain a light yellow solid compound 1-9 (5.22g, 5.19mmol, 86% yield). Compound 1-9 molecular formula: C 52 H 68 O 16 N 4 , molecular weight: 1004.4, LC-MS found 1003.3 (MH).
(9)化合物SA102的制备
(9) Preparation of compound SA102
将化合物1-9(5.19mmol,5.22g)置于洁净干燥反应瓶中,加入50mL无水二氯甲烷。室温氩气保护下加入化合物2-氰乙基N,N,N’,N’-四异丙基亚磷酰二胺(2.0equiv,10.38mmol,3.13g)和4,5-二氰咪唑(1.5equiv,7.79mmol,920.2mg),室温下继续搅拌一小时。反应后向反应液中加入50mL二氯甲烷,并用100mL饱和碳酸氢钠溶液洗涤,干燥有机相,过滤并浓缩,所得粗产品经C18反相柱(规格:30μm; 市售,购买于上海博蕴生物科技有限公司)(MeCN:H2O=75%:25%)制备得到白色固体SA102(4.44g,3.68mmol,71%收率)。化合物SA102分子式:C61H85O17N6P,分子量:1204.5,LC-MS找到1227.3(M+Na).1H NMR(400MHz,DMSO-d6):δ8.10(q,J=8.3Hz,1H),7.80(d,J=9.2Hz,1H),7.68(dd,J=8.8,4.9Hz,1H),7.35–7.28(m,4H),7.20(ddd,J=11.2,6.7,2.2Hz,5H),6.89–6.87(m,4H),5.21(d,J=3.3Hz,1H),4.96(dd,J=11.2,3.4Hz,1H),4.85–4.74(m,1H),4.48(d,J=8.5Hz,2H),4.04–3.99(m,3H),3.87(dd,J=20.0,8.9Hz,1H),3.74(s,6H),3.72–3.67(m,2H),3.63–3.46(m,4H),3.44–3.38(m,2H),3.18(qd,J=8.8,4.6Hz,2H),3.06–2.97(m,3H),2.74(ddd,J=16.6,11.8,5.9Hz,1H),2.61(td,J=5.8,1.8Hz,1H),2.10(s,5H),1.99(s,6H),1.89(s,3H),1.76(s,3H),1.46–1.33(m,8H),1.24–1.09(m,12H),1.06(d,J=6.7Hz,1H),1.00(d,J=6.7Hz,1H).31P NMR(162MHz,DMSO-d6):δ147.07(s),146.74(t,J=32.0Hz).Compound 1-9 (5.19 mmol, 5.22 g) was placed in a clean dry reaction bottle and 50 mL of anhydrous dichloromethane was added. Compound 2-cyanoethyl N,N,N',N'-tetraisopropylphosphorodiamidite (2.0 equiv, 10.38 mmol, 3.13 g) and 4,5-dicyanoimidazole (1.5 equiv, 7.79 mmol, 920.2 mg) were added under argon protection at room temperature and stirred for one hour at room temperature. After the reaction, 50 mL of dichloromethane was added to the reaction solution and washed with 100 mL of saturated sodium bicarbonate solution. The organic phase was dried, filtered and concentrated. The crude product was purified by C18 reverse phase column (specification: 30 μm; Commercially available, purchased from Shanghai Boyun Biotechnology Co., Ltd.) (MeCN:H 2 O=75%:25%) to prepare white solid SA102 (4.44 g, 3.68 mmol, 71% yield). Compound SA102 molecular formula: C 61 H 85 O 17 N 6 P, molecular weight: 1204.5, LC-MS found 1227.3 (M+Na). 1 H NMR (400 MHz, DMSO-d 6 ): δ8.10(q,J=8.3Hz,1H),7.80(d,J=9.2Hz,1H),7.68(dd,J=8.8,4.9Hz,1H),7.35–7.28(m,4H),7.20(ddd,J=11.2,6.7,2.2Hz,5H),6.89–6.87(m,4H),5 .21(d,J=3.3Hz,1H),4.96(dd,J=11.2,3.4Hz,1H),4.85–4.74(m,1H),4.48(d,J=8.5Hz,2H),4.04–3.99(m,3H),3.87(dd,J=20.0,8.9Hz,1H),3.74(s,6 H), 3.72–3.67(m,2H),3.63–3.46(m,4H),3.44–3.38(m,2H),3.18(qd,J=8.8,4.6Hz,2H),3.06–2.97(m,3H),2.74(ddd,J=16.6,11.8,5.9Hz,1H),2.61( td,J=5.8,1.8Hz,1H),2.10(s,5H),1.99(s,6H),1.89(s,3H),1.76(s,3H),1.46–1.33(m,8H),1.24–1.09(m,12H),1.06(d,J=6.7Hz,1H),1.00(d,J =6.7Hz,1H). 31 P NMR (162MHz, DMSO-d 6 ): δ147.07 (s), 146.74 (t, J = 32.0Hz).
实施例14食蟹猴体内活性测试Example 14 In vivo activity test in cynomolgus monkeys
在本实施例中,选取siRNA进行缀合合成,在食蟹猴中进一步评估siRNA缀合物的体内活性。选取体重均一、状态无异常的动物进行随机分组,每组3只,分别给予表15中缀合物,缀合物以实施例13的SA102为起始物,按照实施例4的方法制备得到。按照每只猴子给予3mg/kg的剂量进行皮下给药。在给药前-7天,0天及给药后7天,14天,28天,42天和56天分别进行采血收集血清。血清中C5蛋白水平通过Elisa的方法检测,与给药前-7和0天的血清中C5的平均水平相比,剩余百分比的结果如图7所示,SD004727与SD004728在食蟹猴体内的活性相当。In this example, siRNA was selected for conjugation synthesis, and the in vivo activity of the siRNA conjugate was further evaluated in cynomolgus monkeys. Animals with uniform body weight and normal state were randomly divided into groups, 3 in each group, and the conjugates in Table 15 were given respectively. The conjugates were prepared according to the method of Example 4 using SA102 of Example 13 as the starting material. Subcutaneous administration was performed according to a dose of 3 mg/kg given to each monkey. Blood was collected and serum was collected on days -7 before administration, 0 days, and 7 days, 14 days, 28 days, 42 days, and 56 days after administration. The C5 protein level in serum was detected by Elisa method. Compared with the average level of C5 in serum on days -7 and 0 before administration, the results of the remaining percentage are shown in Figure 7. The activity of SD004727 and SD004728 in cynomolgus monkeys is comparable.
表15
Table 15
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以上对本发明做了详尽的描述,其目的在于让熟悉此领域技术的人士能够了解本发明的内容并加以实施,并不能以此限制本发明的保护范围,凡根据本发明的精神实质所作的等效变化或修饰,都应涵盖在本发明的保护范围内。 The above detailed description of the present invention is intended to enable persons familiar with the art to understand the contents of the present invention and implement them, but it does not limit the protection scope of the present invention. Any equivalent changes or modifications made according to the spirit of the present invention should be included in the protection scope of the present invention.

Claims (18)

  1. 一种siRNA,其包括正义链和反义链,其特征在于:所述siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,所述正义链包括如下序列或与如下序列不超过3个碱基突变的核苷酸序列,所述反义链包括如下序列或与如下序列不超过5个碱基突变的核苷酸序列,A siRNA, comprising a sense strand and an antisense strand, characterized in that: each nucleotide in the siRNA is independently a modified or unmodified nucleotide, the sense strand comprises the following sequence or a nucleotide sequence with no more than 3 base mutations from the following sequence, and the antisense strand comprises the following sequence or a nucleotide sequence with no more than 5 base mutations from the following sequence,
    所述正义链的序列如SEQ ID NO:8,所述反义链的序列如SEQ ID NO:84;或者,所述正义链的序列SEQ ID NO:2,所述反义链的序列如SEQ ID NO:78;或者,所述正义链的序列如SEQ ID NO:55,所述反义链的序列如SEQ ID NO:131;或者,所述正义链的序列如SEQ ID NO:1,所述反义链的序列如SEQ ID NO:77;或者,所述正义链的序列如SEQ ID NO:3至7中任一项,所述反义链的序列如SEQ ID NO:79至83中任一项;或者,所述正义链的序列如SEQ ID NO:9至54中任一项,所述反义链的序列如SEQ ID NO:85至130中任一项;或者,所述正义链的序列如SEQ ID NO:56至76中任一项,所述反义链的序列如SEQ ID NO:132至152中任一项;或者,The sequence of the sense chain is SEQ ID NO:8, and the sequence of the antisense chain is SEQ ID NO:84; or, the sequence of the sense chain is SEQ ID NO:2, and the sequence of the antisense chain is SEQ ID NO:78; or, the sequence of the sense chain is SEQ ID NO:55, and the sequence of the antisense chain is SEQ ID NO:131; or, the sequence of the sense chain is SEQ ID NO:1, and the sequence of the antisense chain is SEQ ID NO:77; or , the sequence of the sense chain is any one of SEQ ID NO:3 to 7, and the sequence of the antisense chain is any one of SEQ ID NO:79 to 83; or, the sequence of the sense chain is any one of SEQ ID NO:9 to 54, and the sequence of the antisense chain is any one of SEQ ID NO:85 to 130; or, the sequence of the sense chain is any one of SEQ ID NO:56 to 76, and the sequence of the antisense chain is any one of SEQ ID NO:132 to 152; or,
    所述正义链的序列如SEQ ID NO:169,所述反义链的序列如SEQ ID NO:170;或者,所述正义链的序列如SEQ ID NO:171,所述反义链的序列如SEQ ID NO:172。The sequence of the sense chain is such as SEQ ID NO:169, and the sequence of the antisense chain is such as SEQ ID NO:170; or, the sequence of the sense chain is such as SEQ ID NO:171, and the sequence of the antisense chain is such as SEQ ID NO:172.
  2. 根据权利要求1所述的siRNA,其特征在于:按照5’到3’的方向,所述正义链的碱基突变在其核苷酸序列的3’末端,所述反义链的碱基突变在其核苷酸序列的5’末端、第2~8位、3’端最后两位中的任意一位或多位。The siRNA according to claim 1 is characterized in that: in the 5' to 3' direction, the base mutation of the sense strand is at the 3' end of its nucleotide sequence, and the base mutation of the antisense strand is at any one or more of the 5' end, the 2nd to 8th positions, and the last two positions of the 3' end of its nucleotide sequence.
  3. 根据权利要求1所述的siRNA,其特征在于:所述修饰的核苷酸为2’-甲氧基修饰的核苷酸、2’-氟代修饰的核苷酸、2’-O-CH2-CH2-O-CH3修饰的核苷酸、2’-O-CH2-CH=CH2修饰的核苷酸、2’-CH2-CH2-CH=CH2修饰的核苷酸、2’-脱氧基核苷酸、2’‐甲氧基乙基修饰的核苷酸、硫代磷酸酯键修饰的核苷酸、VP修饰的核苷酸、LNA、ENA、cET BNA、UNA、GNA或中的一种或多种的组合,其中,R1为H、OH或CH3,Base为天然核碱基、修饰的核碱基、通用碱基或H原子。The siRNA according to claim 1, characterized in that the modified nucleotide is a 2'-methoxy modified nucleotide, a 2'-fluoro modified nucleotide, a 2'-O-CH 2 -CH 2 -O-CH 3 modified nucleotide, a 2'-O-CH 2 -CH=CH 2 modified nucleotide, a 2'-CH 2 -CH 2 -CH=CH 2 modified nucleotide, a 2'-deoxy nucleotide, a 2'-methoxyethyl modified nucleotide, a phosphorothioate bond modified nucleotide, a VP modified nucleotide, LNA, ENA, cET BNA, UNA, GNA or One or more combinations thereof, wherein R1 is H, OH or CH 3 , and Base is a natural nucleobase, a modified nucleobase, a universal base or an H atom.
  4. 根据权利要求1至3中任一项所述的siRNA,其特征在于:所述正义链或所述反义链中的一个及以上的核苷酸为修饰的核苷酸。The siRNA according to any one of claims 1 to 3, characterized in that one or more nucleotides in the sense strand or the antisense strand are modified nucleotides.
  5. 根据权利要求1至3中任一项所述的siRNA,其特征在于:按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、9和11位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,其余位置为2’-甲氧基修饰的核苷酸。The siRNA according to any one of claims 1 to 3, characterized in that: from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 9 and 11 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
  6. 根据权利要求1至3中任一项所述的siRNA,其特征在于:按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,其余位置为2’-甲氧基修饰的核苷酸。The siRNA according to any one of claims 1 to 3, characterized in that: from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides.
  7. 根据权利要求1至3中任一项所述的siRNA,其特征在于:按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,所述反义链的5’末端的磷酸基团被VP取代,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,其余位置为2’-甲氧基修饰的核苷酸;或者, The siRNA according to any one of claims 1 to 3, characterized in that: in the 5' to 3' direction, the 2'-fluoro-modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; in the 5' to 3' direction, the phosphate group at the 5' end of the antisense strand is replaced by VP, the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14 and 16 of the antisense strand, and the remaining positions are 2'-methoxy-modified nucleotides; or,
    按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,反义链的第6位为其余位置为2’-甲氧基修饰的核苷酸;或者,From 5' to 3', the 2'-fluoro-modified nucleotides are located at positions 7, 8, and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3', the 2'-fluoro-modified nucleotides are located at positions 2, 14, and 16 of the antisense strand, and the 6th position of the antisense strand is The remaining positions are 2'-methoxy modified nucleotides; or,
    按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,反义链的第7位为其余位置为2’-甲氧基修饰的核苷酸;或者,From 5' to 3', the 2'-fluoro-modified nucleotides are located at positions 7, 8, and 9 of the sense strand, and the remaining positions are 2'-methoxy-modified nucleotides; from 5' to 3', the 2'-fluoro-modified nucleotides are located at positions 2, 6, 14, and 16 of the antisense strand, and the 7th position of the antisense strand is The remaining positions are 2'-methoxy modified nucleotides; or,
    按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为2’-甲氧基修饰的核苷酸;按照5’到3’的方向,所述反义链的5’末端的磷酸基团被VP取代,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,反义链的第6位为其余位置为2’-甲氧基修饰的核苷酸。From 5' to 3', the 2'-fluoro modified nucleotides are located at positions 7, 8 and 9 of the sense strand, and the remaining positions are 2'-methoxy modified nucleotides; from 5' to 3', the phosphate group at the 5' end of the antisense strand is replaced by VP, the 2'-fluoro modified nucleotides are located at positions 2, 14 and 16 of the antisense strand, and the 6th position of the antisense strand is The remaining positions are 2'-methoxy modified nucleotides.
  8. 根据权利要求5至7中任一项所述的siRNA,其特征在于:所述siRNA中以下核苷酸之间的连接中至少一个为硫代磷酸酯基连接:The siRNA according to any one of claims 5 to 7, characterized in that: at least one of the following connections between nucleotides in the siRNA is a phosphorothioate connection:
    所述正义链的5’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 5' end of the sense strand;
    所述正义链的5’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 5' end of the sense strand;
    所述正义链的3’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 3' end of the sense strand;
    所述正义链的3’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 3' end of the sense strand;
    所述反义链的5’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 5' end of the antisense strand;
    所述反义链的5’端第2个核苷酸和第3个核苷酸之间的连接;The connection between the second nucleotide and the third nucleotide at the 5' end of the antisense strand;
    所述反义链的3’端第1个核苷酸和第2个核苷酸之间的连接;The connection between the first nucleotide and the second nucleotide at the 3' end of the antisense strand;
    所述反义链的3’端第2个核苷酸和第3个核苷酸之间的连接。The connection between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
  9. 根据权利要求1所述的siRNA,其特征在于:所述siRNA选自表1或表2中的siRNA。The siRNA according to claim 1, characterized in that: the siRNA is selected from the siRNA in Table 1 or Table 2.
  10. 一种siRNA缀合物,其特征在于:其包括权利要求1至9中任一项所述的siRNA中的一条或多条,以及缀合至所述siRNA的任意位置的一个或多个缀合基团。A siRNA conjugate, characterized in that it comprises one or more of the siRNAs according to any one of claims 1 to 9, and one or more conjugated groups conjugated to any position of the siRNA.
  11. 根据权利要求10所述的siRNA缀合物,其特征在于:所述siRNA的任意位置连接两个、三个或四个连续连接的所述缀合基团。The siRNA conjugate according to claim 10, characterized in that two, three or four consecutively connected conjugated groups are connected to any position of the siRNA.
  12. 根据权利要求10或11所述的siRNA缀合物,其特征在于:所述缀合基团连接在所述正义链的3’末端和/或5’末端。The siRNA conjugate according to claim 10 or 11, characterized in that the conjugated group is connected to the 3' end and/or 5' end of the sense strand.
  13. 根据权利要求10或11所述的siRNA缀合物,其特征在于:所述siRNA缀合物具有以下结构中的任一种:
    The siRNA conjugate according to claim 10 or 11, characterized in that: the siRNA conjugate has any one of the following structures:
    其中,表示siRNA;in, indicates siRNA;
    R表示缀合基团,R为如下结构中的任意一种或多种:

    R represents a conjugated group, and R is any one or more of the following structures:

    表示连接磷酸基团、硫代磷酸基团或H的连接位点。 Indicates the attachment site for a phosphate group, a thiophosphate group, or H.
  14. 根据权利要求10所述的siRNA缀合物,其特征在于:所述siRNA缀合物选自表6、表9、表11、表12、表13、表14或表15所示的siRNA缀合物。The siRNA conjugate according to claim 10, characterized in that: the siRNA conjugate is selected from the siRNA conjugates shown in Table 6, Table 9, Table 11, Table 12, Table 13, Table 14 or Table 15.
  15. 一种药物组合物,其特征在于:其包括权利要求1至9中任一项所述的siRNA或权利要求10至14中任一项所述的siRNA缀合物,以及药学上可接受的载体或辅料。A pharmaceutical composition, characterized in that it comprises the siRNA according to any one of claims 1 to 9 or the siRNA conjugate according to any one of claims 10 to 14, and a pharmaceutically acceptable carrier or excipient.
  16. 根据权利要求15所述的药物组合物,其特征在于:所述药物组合物用于调节补体C5的表达。The pharmaceutical composition according to claim 15, characterized in that the pharmaceutical composition is used to regulate the expression of complement C5.
  17. 如权利要求1至9中任一项所述的siRNA,或权利要求10至14中任一项所述的siRNA缀合物,或权利要求15或16所述的药物组合物用于制备治疗和/或预防补体C5的表达相关疾病的药剂的用途。Use of the siRNA according to any one of claims 1 to 9, or the siRNA conjugate according to any one of claims 10 to 14, or the pharmaceutical composition according to claim 15 or 16 for preparing a medicament for treating and/or preventing diseases related to the expression of complement C5.
  18. 根据权利要求17所述的用途,其特征在于:所述疾病包括阵发性夜间血红蛋白尿、非典型溶血性尿毒综合征、老年性黄斑变性、重症肌无力、IgA肾炎、视神经脊髓炎和C3肾小球疾病。 The use according to claim 17 is characterized in that the diseases include paroxysmal nocturnal hemoglobinuria, atypical hemolytic uremic syndrome, age-related macular degeneration, myasthenia gravis, IgA nephritis, neuromyelitis optica and C3 glomerular disease.
PCT/CN2024/076866 2023-02-17 2024-02-08 Sirna for regulating expression of complement c5, and conjugate, pharmaceutical composition, and use thereof WO2024169908A1 (en)

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US20160237438A1 (en) * 2015-02-17 2016-08-18 Dicerna Pharmaceuticals, Inc. Methods and compositions for the specific inhibition of complement component 5(c5) by double-stranded rna
CN112771163A (en) * 2018-10-26 2021-05-07 卫材R&D管理有限公司 Double-stranded ribonucleic acid capable of suppressing expression of complement C5
WO2021154941A1 (en) * 2020-01-31 2021-08-05 Alnylam Pharmaceuticals, Inc. Complement component c5 irna compositions for use in the treatment of amyotrophic lateral sclerosis (als)
WO2022136673A1 (en) * 2020-12-23 2022-06-30 Argonaute RNA Limited Conjugate

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Publication number Priority date Publication date Assignee Title
US20160237438A1 (en) * 2015-02-17 2016-08-18 Dicerna Pharmaceuticals, Inc. Methods and compositions for the specific inhibition of complement component 5(c5) by double-stranded rna
CN112771163A (en) * 2018-10-26 2021-05-07 卫材R&D管理有限公司 Double-stranded ribonucleic acid capable of suppressing expression of complement C5
WO2021154941A1 (en) * 2020-01-31 2021-08-05 Alnylam Pharmaceuticals, Inc. Complement component c5 irna compositions for use in the treatment of amyotrophic lateral sclerosis (als)
WO2022136673A1 (en) * 2020-12-23 2022-06-30 Argonaute RNA Limited Conjugate

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