WO2023216440A1 - Tcr specifically recognizing prame antigen peptide and use thereof - Google Patents

Tcr specifically recognizing prame antigen peptide and use thereof Download PDF

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WO2023216440A1
WO2023216440A1 PCT/CN2022/111175 CN2022111175W WO2023216440A1 WO 2023216440 A1 WO2023216440 A1 WO 2023216440A1 CN 2022111175 W CN2022111175 W CN 2022111175W WO 2023216440 A1 WO2023216440 A1 WO 2023216440A1
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chain
tcr
seq
cells
amino acid
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PCT/CN2022/111175
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French (fr)
Chinese (zh)
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吴显辉
陈亮
汤小欣
柳小标
栗红建
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溧阳瑅赛生物医药有限公司
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • C07K14/7051T-cell receptor (TcR)-CD3 complex
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K35/00Medicinal preparations containing materials or reaction products thereof with undetermined constitution
    • A61K35/12Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells
    • A61K35/14Blood; Artificial blood
    • A61K35/17Lymphocytes; B-cells; T-cells; Natural killer cells; Interferon-activated or cytokine-activated lymphocytes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/177Receptors; Cell surface antigens; Cell surface determinants
    • A61K38/1774Immunoglobulin superfamily (e.g. CD2, CD4, CD8, ICAM molecules, B7 molecules, Fc-receptors, MHC-molecules)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/02Antineoplastic agents specific for leukemia
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    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/06Animal cells or tissues; Human cells or tissues
    • C12N5/0602Vertebrate cells
    • C12N5/0634Cells from the blood or the immune system
    • C12N5/0636T lymphocytes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2510/00Genetically modified cells

Definitions

  • the invention belongs to the field of biotechnology and relates to a TCR that specifically recognizes PRAME antigen peptide and its application, specifically a TCR that recognizes HLA-A*02:01/PRAME 100-108 and its application.
  • Melanoma-specific antigen (Preferentially Expressed Antigen of Melanoma, PRAME) is a member of the tumor testis antigen family. It was originally discovered in melanoma. It is immunogenic and can be specifically targeted by cytotoxic T lymphocytes (referred to as T cells). Surface antigens that recognize and trigger tumor lysis (Immunity, 1997, 6, 199; Br J Haematol, 1998, 102, 1376; J Exp Med, 2001, 193, 73; Clin Cancer Res, 2006, 12, 3130; Blood, 2008, 112 , 1876; Clin Cancer Res, 2011, 17, 5615; Oncol Rep, 2014, 31, 384; Cancer Res, 2018, 78, 3337).
  • PRAME is a tumor-associated antigen that is highly expressed in many different cancers, such as acute and chronic leukemia, lymphoma, melanoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma, breast cancer, etc.
  • VLDGLDVLL peptide (SEQ ID NO:1) is located at 100-108 on PRAME and can be presented through HLA-A*02:01 molecules and recognized by cytotoxic T lymphocytes to produce effects. This peptide is closely related to HLA-A *02:01 The binding affinity of the molecule is 5.2 ⁇ M, and the half-decay period of the complex at 37°C is 2.5h (J.Exp.Med., 2001, 193,73).
  • T cell receptor gene engineered T cells transduces tumor antigen-specific TCR genes into normal T cells, which can enhance or re-endow the T cells with recognition
  • the ability of tumor antigens to specifically target and kill tumor cells is an important treatment method in current adoptive cell therapy (Immunol Rev, 2014, 257, 56).
  • Many clinical trials have proven the effectiveness and safety of TCR-T cell therapy in the treatment of melanoma, synovial cell sarcoma, myeloma and other malignant tumors (Science, 2006, 314, 126; J Clin Oncol, 2011, 29, 917; Nat Med ,2015,21,914; Blood,2017,130,1985; Cancer Discov, 2018,8,944).
  • TCR-T therapy will gradually develop in the direction of high efficiency, low toxicity and controllability, which will not only improve the efficacy and safety, but also bring convenience to clinical application, thereby providing More cancer patients bring hope of cure.
  • the technical problem to be solved by the present invention is to overcome the shortcoming of the limited number of TCRs that recognize and bind to the PRAME antigen peptide in the prior art. Therefore, the present invention provides a TCR that specifically recognizes the PRAME antigen peptide. T cells modified using this TCR pass through Efficiently recognizes HLA-A*02:01/PRAME 100-108 targets to specifically kill tumor cells.
  • MHC Major histocompatibility complex
  • APC antigen-presenting cells
  • T cell receptor is the only receptor for specific antigens presented on MHC.
  • TCR T cell receptor
  • the combination of antigen-specific TCR and pMHC complex triggers direct physical contact between T cells and APC, and then other cell membrane surface molecules of T cells and APC interact, causing a series of subsequent cell signals. transmission and other physiological responses, allowing T cells with different antigen specificities to exert immune effects on their target cells.
  • TCR is a functional unit for T lymphocytes to recognize antigens. It belongs to the immunoglobulin superfamily. Its coding chain includes four chains: ⁇ , ⁇ , ⁇ and ⁇ . TCR is composed of ⁇ chain/ ⁇ chain or ⁇ chain/ ⁇ chain with heterogeneous two chains. Glycoproteins on the surface of cell membranes that exist in aggregate form. 95% of TCRs in peripheral blood are heterodimers composed of two polypeptide chains, ⁇ and ⁇ . However, recombinant TCR can also be composed of a single TCR ⁇ chain or TCR ⁇ chain, which has been shown to be able to bind antigen peptide-MHC molecules (WO 2005/113595).
  • each ⁇ and ⁇ chain contains a variable region, a connecting region, and a constant region.
  • the ⁇ chain usually also contains a short variable region between the variable region and the connecting region, but this variable region is often regarded as a connecting region. part of the district.
  • Each variable region contains three CDRs (complementary determining regions), CDR1, CDR2 and CDR3, embedded in framework regions.
  • the CDR region determines the binding of TCR to the pMHC complex, in which CDR3 is recombined from the variable region and the connecting region and is called the hypervariable region.
  • the ⁇ and ⁇ chains of TCR are generally regarded as having two "domains" each, namely a variable domain and a constant domain.
  • the variable domain is composed of connected variable regions and connecting regions.
  • the sequence of the TCR constant domain can be found in the public database of the International Immunogenetic Information System (IMGT).
  • IMGT International Immunogenetic Information System
  • the constant domain sequence of the ⁇ chain of the TCR molecule is TRAC (also known as TRAC*01)
  • TRBC1 also known as TRBC1*01
  • TRBC2 also known as TRBC2*01
  • the ⁇ and ⁇ chains of TCR also contain a transmembrane region and a cytoplasmic region, and the cytoplasmic region is very short.
  • the ⁇ chain is composed of TRAV, TRAJ, and TRAC rearrangements in germline genes; the ⁇ chain is composed of TRBV, TRBD, TRBJ, and TRBC rearrangements in germline genes.
  • V(D)J rearrangements it is composed of V-J( When connecting (or V-D and D-J), different numbers of nucleotides are randomly inserted to form a variable region (N) that becomes the complementarity determining region 3 (CDR3).
  • N variable region
  • CDR3 complementarity determining region 3
  • the positions of CDR1 ⁇ CDR3 and FR1 ⁇ FR4 in the TCR full-length sequence are determined according to the IMGT nomenclature.
  • This definition is well known and can be found in the IMGT public data, "T cell Receptor Factsbook , (2001) LeFranc and LeFanc, Acdamic Press, ISBN 0-12-441352-8" also discloses sequences defined by the IMGT nomenclature.
  • the CDRs of a TCR can be defined in a variety of ways in the art.
  • TCR TCR with a specific CDR sequence defined in the present invention
  • scope of the TCR also covers such TCR
  • Its variable region sequence contains the specific CDR sequence, but due to the application of different schemes (such as different assignment system rules or combinations), the claimed CDR boundaries are different from the specific CDR boundaries defined in the present invention.
  • a TCR the TCR includes an ⁇ chain and/or a ⁇ chain
  • the ⁇ chain includes an ⁇ chain variable region
  • the ⁇ chain includes a ⁇ chain variable region
  • the ⁇ chain includes a ⁇ chain variable region
  • the ⁇ chain includes a CDR3 of the chain variable region
  • the amino acid sequence shown in SEQ ID NO:6 the amino acid sequence shown in SEQ ID NO:9.
  • the CDR1 and CDR2 of the alpha chain variable region comprise the amino acid sequences shown in SEQ ID NO:4 and SEQ ID NO:5 respectively, and/or the beta chain variable region
  • the CDR1 and CDR2 contain the amino acid sequences shown in SEQ ID NO:7 and SEQ ID NO:8 respectively.
  • the CDR1, CDR2 and CDR3 of the alpha chain variable region respectively comprise the amino acid sequences shown in SEQ ID NO:4, SEQ ID NO:5 and SEQ ID NO:6, and the The CDR1, CDR2 and CDR3 of the ⁇ chain variable region respectively include the amino acid sequences shown in SEQ ID NO:7, SEQ ID NO:8 and SEQ ID NO:9.
  • amino acid sequences of CDR1, CDR2 and CDR3 of the ⁇ chain variable region are shown in SEQ ID NO: 4, SEQ ID NO: 5 and SEQ ID NO: 6 respectively, and the The amino acid sequences of CDR1, CDR2 and CDR3 of the ⁇ chain variable region are shown in SEQ ID NO:7, SEQ ID NO:8 and SEQ ID NO:9 respectively.
  • the TCR of the present invention can be a variety of forms of antigen-binding structures, and can be natural or mutant, full-length, or antigen-binding fragments such as TCR single chains ( ⁇ chain or ⁇ chain). chain) or scTCR (TCR ⁇ chain variable region and TCR ⁇ chain variable region are composed of short peptide linkers), etc.
  • the ⁇ chain and/or ⁇ chain of the TCR in the present invention preferably further includes a framework region (FR); wherein:
  • the framework region of the ⁇ chain is derived from TRAV and TRAJ, wherein the TRAV is preferably germline TRAV20, and the TRAJ is preferably germline TRAJ36.
  • the framework region of the ⁇ chain is derived from TRBV, TRBD and TRBJ.
  • the TRBV is preferably the germline TRBV7-8
  • the TRBD is preferably the germline TRBD1
  • the TRBJ is preferably the germline TRBJ2-3.
  • the alpha chain variable region of the TCR contains the amino acid sequence shown in SEQ ID NO: 10 or its derivative sequence.
  • the ⁇ -chain variable region of the TCR contains the amino acid sequence shown in SEQ ID NO: 12 or its derivative sequence.
  • amino acid sequence of the alpha chain variable region is as shown in SEQ ID NO: 10 or its derivative sequence
  • amino acid sequence of the beta chain variable region is as shown in SEQ ID NO: 12 or Its derivative sequence is shown.
  • the identity of the derived sequence to the original sequence is 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or more, and remains identical to the original sequence Same functionality.
  • the ⁇ chain of the TCR in the present invention preferably further includes a constant region, and the constant region of the ⁇ chain is preferably derived from the human germline.
  • the constant region of the ⁇ chain is derived from TRAC.
  • the ⁇ chain of the TCR in the present invention preferably further includes a constant region, and the constant region of the ⁇ chain is preferably derived from the human germline.
  • the constant region of the ⁇ chain is derived from TRBC.
  • the TRBC is germline TRBC2.
  • amino acid sequence of the constant region of the alpha chain derived from the human germline is shown in SEQ ID NO: 11.
  • amino acid sequence of the constant region of the beta chain derived from the human germline is shown in SEQ ID NO: 13.
  • the ⁇ chain described in the present invention may also include an extramembrane region and a transmembrane region; preferably, the ⁇ chain also includes an intracellular sequence.
  • the ⁇ chain may also include an extramembrane region and a transmembrane region; preferably, the ⁇ chain also includes an intracellular sequence.
  • the amino acid sequence of the ⁇ chain of the TCR containing a signal peptide is shown in SEQ ID NO: 2, wherein the signal peptide is located at positions 1 to 21 of the specific sequence; and/or, contains a signal
  • SEQ ID NO: 3 the amino acid sequence of the ⁇ chain of the TCR of the peptide is shown in SEQ ID NO: 3, in which the signal peptide is located at positions 1 to 19 of the specific sequence.
  • the signal peptide is located at the N-terminus of the post-translational protein and guides the protein to the designated expression site. Therefore, the full-length sequence of the ⁇ chain and ⁇ chain in the present invention does not contain the signal peptide, so the above-mentioned
  • the signal peptide sequence does not limit the full-length amino acid sequence of the above-mentioned ⁇ chain and ⁇ chain of the present invention; and in specific applications, the signal peptide can be adjusted, and the present invention is not limited to the signal peptide sequence in the above-mentioned specific embodiments.
  • the second technical solution of the present invention is: an isolated nucleic acid encoding the TCR as described in the first technical solution of the present invention.
  • the third technical solution of the present invention is: a vector containing the nucleic acid as described in the second technical solution, the vector is preferably a lentiviral vector; the nucleic acid is in a single open reading frame, or in two different open reading frames.
  • the reading frames encode TCR ⁇ chain and TCR ⁇ chain respectively.
  • vector means a construct capable of delivering one or more genes or sequences of interest into a host cell and preferably expressing the genes or sequences in the host cell.
  • vectors include, but are not limited to, viral vectors, naked DNA or RNA expression vectors, plasmid, cosmid or phage vectors, DNA or RNA expression vectors associated with cationic coagulants, DNA or RNA expression encapsulated in liposomes vectors as well as certain eukaryotic cells, such as producer cells.
  • viral vectors When used for prevention or treatment, viral vectors are usually used as vectors, which may include, but are not limited to, lentiviral vectors, retroviral vectors, adenoviral vectors, adeno-associated virus vectors and simplex virus vectors. More specifically, as described in the Examples, lentiviral vectors can be used to deliver the constructs in vitro, ex vivo or in vivo.
  • the invention also relates to host cells genetically engineered using the vectors or coding sequences of the invention.
  • the host cell contains the vector of the present invention or the nucleic acid molecule of the present invention is integrated into the chromosome.
  • Host cells are selected from: prokaryotic cells and eukaryotic cells, such as Escherichia coli, yeast cells, CHO cells, 293T cells, etc. When used for prevention or treatment, the host cells can be T lymphocytes, hematopoietic stem cells, etc. commonly used in this field.
  • the invention also includes isolated cells, particularly T cells, expressing the TCR of the invention.
  • the T cells may be derived from T cells isolated from the subject, or may be part of a mixed cell population isolated from the subject, such as a peripheral blood lymphocyte (PBL) population.
  • PBL peripheral blood lymphocyte
  • the cells can be isolated from peripheral blood mononuclear cells (PBMC) and can be CD4 + helper T cells or CD8 + cytotoxic T cells.
  • PBMC peripheral blood mononuclear cells
  • the cells may be in a mixed population of CD4 + helper T cells/CD8 + cytotoxic T cells.
  • the cells can be activated with antibodies (such as anti-CD3 or anti-CD28 antibodies) to render them more receptive to transfection, e.g., with a vector containing a nucleotide sequence encoding a TCR molecule of the invention. .
  • antibodies such as anti-CD3 or anti-CD28 antibodies
  • the expression vector can be transfected or introduced into a suitable host cell.
  • a variety of techniques can be used to achieve this purpose, for example, protoplast fusion, calcium phosphate precipitation, electroporation, retroviral transduction, viral transfection, gene gun, lipid-based transfection or other conventional techniques.
  • protoplast fusion cells are grown in culture medium and screened for appropriate activity.
  • the methods and conditions for culturing the transfected cells produced and for recovering the TCR molecules produced are known to those skilled in the art and can be based on the present description and methods known from the prior art, depending on the specific expression vector used and Mammalian host cell changes or optimizations.
  • cells that have stably incorporated DNA into their chromosomes can be selected by introducing one or more markers that allow selection of transfected host cells. Markers may, for example, provide prototrophy, biocidal resistance (eg, antibiotics), or heavy metal (eg, copper) resistance to an auxotrophic host, etc.
  • the selectable marker gene can be directly linked to the DNA sequence to be expressed or introduced into the same cell by co-transformation. Additional components may also be required for optimal synthesis of mRNA. These elements may include splicing signals, as well as transcription promoters, enhancers, and termination signals.
  • the fourth technical solution of the present invention is: a cell containing the nucleic acid as described in the second technical solution or the vector as described in the third technical solution; preferably, the cells are T cells or stem cells, and the The T cells are preferably CD8 + T cells.
  • the fifth technical solution of the present invention is: an isolated or non-naturally occurring cell that presents the TCR as described in one of the technical solutions, and the cell is preferably a T cell.
  • cell in the present invention may include cells into which exogenous nucleic acid has been introduced, including the progeny of these cells.
  • Cells include “transformants” and “transformed cells,” which include primary transformed cells and progeny derived therefrom, regardless of passage number.
  • the progeny may not be identical in nucleic acid content to the parent cells, but may contain mutations.
  • the present invention includes mutant progeny that have the same function or biological activity as the cells screened or selected in the initially transformed cells.
  • the sixth technical solution of the present invention is: a pharmaceutical composition, which contains the TCR as described in the first technical solution or the cells described in the fourth technical solution; preferably, the pharmaceutical composition also includes a pharmaceutical composition. Acceptable carrier.
  • the pharmaceutical compositions of the present invention include suitable pharmaceutically acceptable carriers such as pharmaceutical excipients, such as pharmaceutical carriers, pharmaceutical excipients, including buffers known in the art.
  • pharmaceutically acceptable carrier or “pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, isotonic and absorption delaying agents, and the like that are physiologically compatible.
  • Pharmaceutical carriers suitable for use in the present invention can be sterile liquids such as water and oils. When administering pharmaceutical compositions intravenously, water is the preferred carrier. Saline solutions and aqueous dextrose and glycerol solutions may also be used as liquid carriers, particularly for injectable solutions.
  • Suitable excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glyceryl monostearate, talc, sodium chloride, dry skim milk, glycerin , propylene, glycol, water, ethanol, etc.
  • the compositions can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents.
  • compositions may take the form of solutions, suspensions, emulsions, tablets, pills, capsules, powders, sustained release formulations, and the like.
  • Oral formulations may contain standard pharmaceutical carriers and/or excipients such as pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, saccharin.
  • the compositions of the present invention can be prepared by mixing the TCR of the present invention with the desired purity with one or more optional pharmaceutical excipients (Remington's Pharmaceutical Sciences, 16th edition, Osol, A. Ed. (1980)).
  • the pharmaceutical preparation or pharmaceutical composition is preferably in the form of a lyophilized preparation or aqueous solution.
  • compositions or preparations of the present invention may also contain more than one active ingredient required for the particular indication being treated, preferably those having complementary activities that do not adversely affect each other.
  • active ingredients are suitably present in combination in amounts effective for the intended use.
  • Sustained release formulations can be prepared. Suitable examples of sustained release formulations include semi-permeable matrices of solid hydrophobic polymers containing the TCR or antigen-binding fragments thereof of the invention in the form of shaped articles, such as films or microcapsules.
  • the seventh technical solution of the present invention is: a TCR as described in technical solution one, a cell as described in technical solution four, or a pharmaceutical composition as described in technical solution six in the preparation of drugs for preventing and treating tumors related to PRAME expression.
  • the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
  • the eighth technical solution of the present invention is: a method for treating and/or preventing PRAME expression-related tumors, which method includes administering to a patient in need a therapeutically effective amount of the TCR described in one of the technical solutions, such as the technical solution The cells described in claim 4 or the pharmaceutical composition described in claim 6.
  • the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
  • the term "effective amount” means an amount of a drug or agent that elicits the biological or pharmaceutical response in a tissue, system, animal, or human, for example, that is sought by a researcher or clinician.
  • therapeutically effective amount means an amount that results in improved treatment, cure, prevention, or alleviation of a disease, condition, or side effect, or a reduced rate of progression of a disease or condition, as compared to a corresponding subject who does not receive such amount. amount.
  • the term also includes within its scope amounts effective to enhance normal physiological functions.
  • the ninth technical solution of the present invention is: a combination therapy, which includes administering to a patient in need the TCR described in one technical solution, the cell described in technical solution four, or the drug combination described in technical solution six.
  • substance, and a second therapeutic agent preferably contains other anti-tumor active ingredients, such as other TCRs, antibodies, anti-tumor active agents, small molecule drugs or immunomodulators, etc.
  • the tenth technical solution of the present invention is to use the TCR as described in technical solution one, the cell as described in technical solution four, or the pharmaceutical composition as described in technical solution six for the treatment and/or prevention of tumors related to PRAME expression. .
  • the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
  • the affinity K D value of the TCR of the present invention and pMHC reaches 1.3E-05M, and the affinity to HLA-A*02:01 + /PRAME + target cells (K562-A0201-3G5) is It has specific killing effects in vitro and in vivo, but has no obvious effect on other non-double-positive tumor cells or healthy human PBMC.
  • Figure 1 shows the sorting process of PRAME 100-108 antigen-specific double-positive monoclonal CD8 + T cells.
  • Figure 2A and Figure 2B show the anion exchange chromatography and SDS-PAGE electrophoresis images of PVL7 TCR after renaturation.
  • Figure 3A and Figure 3B show the gel filtration chromatography and SDS-PAGE electrophoresis images of PVL7 TCR after renaturation.
  • Figure 4A and Figure 4B show the anion exchange chromatography and SDS-PAGE electrophoresis images of HLA-A*02:01/ ⁇ 2M/VLDGLDVLL after renaturation; among them, the band with large molecular weight is HLA-A*02:01 and the band with small molecular weight The band is ⁇ 2M, and the VLDGLDVLL polypeptide cannot see the band on SDS-PAGE because its molecular weight is too small.
  • Figure 5 shows the gel filtration chromatogram of HLA-A*02:01/ ⁇ 2M/VLDGLDVLL after renaturation.
  • Figure 6 shows the Gel Shift diagram after biotinylation of PRAME-pMHC.
  • Figure 7 shows the results of the PVL7 TCR affinity test.
  • Figure 8 shows the results of the positivity rate of CD8 + T cells infected with PVL7 TCR lentivirus; PVLcon is the positive TCR control group and GFP is the negative control group.
  • Figure 9A, Figure 9B and Figure 9C are the INF- ⁇ release diagrams of PVL7 TCR on T 2 cells loaded with PRAME 100-108 , NY-ESO-1 157-165 or HPV16-E6 29-38 polypeptides.
  • Figure 10 is a flow cytometry diagram of the constructed K562-A0201 monoclonal cells.
  • Figure 11 shows the INF- ⁇ release graph of PVL7 TCR on different tumor cell lines.
  • Figure 12 shows the results of PVL7 TCR specific killing experiments on LDH in different tumor cell lines.
  • Figure 13A and Figure 13B show the INF- ⁇ release diagram of PVL7 TCR on PBMC of 28 healthy people with different HLA-A types.
  • Figure 14 shows the tumor growth curve of PVL7 TCR-T animal experiments.
  • Figure 15 shows the tumor status of mice after 18 days of administration of PVL7 TCR-T cells.
  • PRAME 100-108 (VLDGLDVLL) antigen-specific CD8 + T cell TCR gene cloning methods, reagents and consumables mainly refer to Curr.Protoc.Immunol.2002,7,1; PLoS One.2011,6,e27930; Onco Immunology .2016,5,e1175795; J Vis Exp.2011,8,3321; J Immunol Methods.2006,310,40; PLoS One.2014,9,e110741 and its citations.
  • EBV-B cells loaded with PRAME 100-108 peptide were used (J Vis Exp. 2011 , 8,3321) (EBV virus: ATCC product number VR-1492) to stimulate CD8 + T cells, and then use PE-labeled HLA-A*02:01/PRAME 100-108 tetramer (see Example 3 for the preparation method) and APC-labeled anti-CD8 antibody (Biolegend, product number 301014) to double-stain T cells, flow sort to obtain double-positive T cells, and expand and culture the T cells to a certain number before sorting again ( Figure 1 ).
  • the double-positive T cells were cultured monoclonally using the limiting dilution method.
  • the proliferated monoclonal T cells were flow cytometrically detected by double staining with HLA-A*02:01/PRAME 100-108 tetramer and anti-CD8 antibody and sorted to obtain PRAME 100-108 antigen-specific monoclonal T cells.
  • the Quick-RNA TM MiniPrep kit (ZYMO research, product number R1050) was used to extract the total RNA from the monoclonal T cells, and the RNA was reverse transcribed using the SMARTer RACE cDNA Amplification Kit (Clontech, product number 634923) to obtain cDNA. Then use cDNA as a template to amplify the target gene through PCR and connect it to the pUC19 vector. Transform it into E.coli-DH5 ⁇ by heat shock method. After plate culture overnight, single clone colonies are picked for identification and sequencing.
  • the gene sequence obtained by sequencing is in The IMGT database was compared and analyzed, and finally an HLA-A*02:01/PRAME 100-108 antigen-specific TCR was obtained, named PVL7 TCR. Its TCR ⁇ and ⁇ chain genotypes are shown in Table 1.
  • the underlined sequence is the signal peptide region
  • the black bolded sequence is V ⁇ (variable region of ⁇ chain) or V ⁇ (variable region of ⁇ chain)
  • the bolded italicized sequence is C ⁇ (constant region of ⁇ chain).
  • the sequence marked in italics and underline is the transmembrane intracellular region
  • the sequence marked in bold and underline is the CDR sequence.
  • PRAME full-length sequence (SEQ ID NO:14):
  • the underlined sequence is the PRAME 100-108 peptide.
  • lysis buffer (1 ⁇ PBS containing 0.5% Triton X-100), conduct ultrasonic disruption, and centrifuge at 12,000 rpm for 20 min. Discard the supernatant, resuspend the pellet in lysis buffer until there are no particles visible to the naked eye, centrifuge at 12,000 rpm for 10 min, repeat the above operation 2-3 times, dissolve the pellet with 6M guanidine hydrochloride solution, centrifuge at 12,000 rpm for 10 min, collect the supernatant, and the supernatant is Purified inclusion bodies. Inclusion bodies were quantified using the BCA method.
  • the renaturation and purification of pMHC were prepared according to the method of NIH Tetramer Core Facility. According to the online protocols, add the PRAME 100-108 peptide solution, ⁇ 2M and HLA-A*02:01 inclusion body solution in sequence to the refolding buffer (0.1M Tris-HCl, 0.4M L-arginine, 2mM EDTA, 0.5mM Oxidized glutathione and 5mM reduced glutathione, 0.2mM PMSF), stir overnight at 4°C, add the same amount of HLA-A*02:01 inclusion body solution in the morning and evening the next day, 4°C After stirring for 1-3 days, dialyze three times in 10 times the volume of dialysate (pH 8.1, 20mM Tris-HCl).
  • the dialyzed protein sample was subjected to anion exchange chromatography using HiTrap Q HP (5 mL), linear elution was performed with eluent (0-2M NaCl, 20mM Tris pH 8.1), and the elution peaks were collected and combined (Figure 4A).
  • Samples collected from the elution peak segments (A1-A5) in Figure 4A were analyzed by reducing SDS-PAGE electrophoresis. Two bands, HLA-A*02:01 and ⁇ 2M, were clearly visible (Figure 4B, A3-A5 in the figure).
  • the purity has met the subsequent requirements, but the molecular weight of the PRAME 100-108 polypeptide is too small and no bands can be seen in the gel image.
  • the elution peak containing the pMHC component was concentrated and purified by gel filtration chromatography (Superdex 75 10/300) ( Figure 5).
  • the pMHC complex was biotinylated with recombinant enzyme BirA (Protein Expr. Purif. 2012, 82, 162; J. Bacteriol. 2012, 194, 1113.), and then added streptavidin (SA) for reaction verification.
  • the reaction system was prepared and Gel Shift purity identified according to the method of NIH Tetramer Core Facility. Judging from the Gel Shift electrophoresis pattern ( Figure 6), the biotinylation of the PRAME-pMHC complex was successfully prepared.
  • Biacore is an instrument that detects affinity based on Surface Plasmon Resonance (SPR) technology.
  • SPR Surface Plasmon Resonance
  • Biacore T200 was used to first couple biotinylated pMHC to the CM5 chip, and then detect its binding dissociation constants with different TCRs and calculate the K D value. Based on this, the affinity of PVL7 TCR and pMHC (HLA-A*02:01/VLDGLDVLL) was tested. See Table 3 and Figure 7 for details.
  • the third generation lentivirus packaging system (Invitrogen, pLenti6/V5Directional TOPO TM Cloning Kit, product number K495510) is used to package the lentivirus containing the gene encoding the target TCR.
  • kit instructions combine the packaging plasmids pMDLg/pRRE (addgene, product number k12251), pRSV-REV (addgene, product number 12253), and pMD2.G (addgene, product number 12259) with the target gene.
  • Shuttle plasmids such as pLenti-PVL7, pLenti-PVLcon (the TCR gene sequence is derived from TCR T4.8-1-29 in patent number US2019169261A1), pLenti-GFP (negative control), etc. are based on the mass ratio of 4:2:1:1 Mix well and use transfection reagent PEI-MAX (Polyscience, product number 23966-1) to transiently transfect 293T cells in the logarithmic growth phase. 48-50 h after transfection, the medium supernatant containing lentivirus was collected.
  • PEI-MAX Polyscience, product number 23966-1
  • This example uses an ELISPOT test to analyze the release of INF- ⁇ factors from PVL7 TCR under stimulation of T 2 cells loaded with specific or non-specific polypeptides.
  • the effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5.
  • the target cells in this example are T 2 cells loaded with polypeptides of different concentrations.
  • the T 2 cells were exposed to 7 gradient concentrations (10 -11 , 10 -10 , 10 -9 , 10 -8 , 10 -7 , 10 -6 , 10 -5 M) PRAME 100-108 polypeptide, or 10 -6 M NY-ESO-1 157-165 polypeptide or HPV16-E6 29-38 polypeptide, mix well, place it in a 37°C incubator for 4 hours, and then centrifuge. Wash once with 1 ⁇ PBS and resuspend the cells in RPMI 1640 medium containing 10% FBS for the next step of plating.
  • follow-up experimental operations were performed according to the instructions of the Human INF- ⁇ ELISPOT Set kit (BD biosciences, product number 551849).
  • 1G4TCR-T cells that specifically recognize NY-ESO-1 157-165 (refer to patent CN112442118A for the preparation method) and E6con TCR-T cells that specifically recognize HPV16-E6 29-38 (refer to patent CN113754756A for the preparation method) have significant activity ( Figure 9B & Figure 9C), while neither PVL7 nor PVLcon TCR-T cells had significant activity against T 2 cells loaded with non-specific NY-ESO-1 157-165 or HPV16-E6 29-38 polypeptides. T 2 cells loaded with PRAME/NY-ESO-1/HPV16-E6 peptide fragments were unable to stimulate GFP TCR-T cells to release INF- ⁇ factors.
  • the function of PVL7 TCR is close to that of the positive control PVLcon, and it is specific for the recognition of HLA-A*02:01/PRAME 100-108 .
  • HLA-A*02:01 + /PRAME + double-positive target cells for PVL7 TCR functional verification the HLA-A*02:01 gene was connected to the corresponding shuttle plasmid through the method of Example 5, and lentiviral Packed and then transduced into K562 tumor cells (HLA-A*02:01 - /PRAME + ), K562 polyclonal cells with chromosomally integrated HLA-A*02:01 gene were initially obtained.
  • K562-A0201 polyclonal cells were isolated and cultured in a 96-well plate using the limiting dilution method, with each well containing 0.5–1 candidate cells. After the candidate cells have been amplified, use mouse anti-human HLA-A2 flow cytometry antibody (BD Pharmingen, product number 558570) to detect the expression of HLA-A*02:01 on the K562-A0201 monoclonal cell membrane surface. As shown in Figure 10, the HLA-A*02:01 expression positivity rate of K562-A0201 monoclonal cells numbered 3G5 is 99.7%. This cell will be used for in vitro functional verification and animal experiments of PVL7 TCR.
  • BD Pharmingen product number 558570
  • HLA-A*02:01 gene full-length sequence (SEQ ID NO:15):
  • This example uses ELISPOT assay to analyze the release of INF- ⁇ factor by PVL7 TCR under stimulation of different tumor cell lines.
  • the effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5.
  • the tumor target cells in this example are K562, K562-A0201-3G5, Hela (Peking Union Cell Resource Center), SiHa (Peking Union Cell Resource Center), Raji (Peking Union Cell Resource Center) and HT-1080 (Peking Union Cell Resource Center). Cell Resource Center) cells.
  • Example 6 4 ⁇ 10 3 positive effector cells/well and 4 ⁇ 10 4 tumor target cells/well were added to the ELISPOT well plate in sequence, with 200 ⁇ L of culture system per well, and the well plate was placed in a cell culture incubator for incubation. overnight. After the incubation, the ELISPOT well plate was washed and developed according to the method of Example 6, and finally the well plate was analyzed with an enzyme-linked immunospot analyzer.
  • PVL7 and PVLcon TCR-T cells showed strong stimulatory activity on the double-positive tumor target cell K562-A0201-3G5.
  • the activity of PVL7 in releasing INF- ⁇ factor was slightly higher than that of PVLcon, but there was no difference between the two. significant difference.
  • Other tumor cells were unable to stimulate PVL7 and PVLcon TCR-T cells to release INF- ⁇ .
  • GFP TCR-T cells have no obvious activity against all tumor target cells.
  • the effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5.
  • the tumor target cells in this example are K562 and K562-A0201-3G5 cells. Sequentially add 3 ⁇ 10 4 positive effector cells/well and 1 ⁇ 10 4 tumor target cells/well to a 96-well round-bottom plate, with 200 ⁇ L of culture system in each well. The cells were replaced with RPMI 1640 containing only 5% FBS when plating.
  • CytoTox Non-Radioactive Cytotoxicity Assay kit instructions (Promega, product number G1780), add lysis solution to the blank well of the culture medium and the maximum self-release hole of the tumor target cells, place it in a cell culture incubator and incubate for 45 minutes, take 50 ⁇ L of supernatant from each well and Mix 50 ⁇ L LDH detection solution and incubate at room temperature in the dark for 30 minutes. After the incubation, stop solution was added and the plate was read at 490 nm.
  • LDH release percentage % (release amount of experimental group – self-release amount of tumor cells – self-release amount of TCR-T cells) / (maximum release amount of tumor cells – tumor cells Self-release amount)*100%.
  • PVL7 and PVLcon TCR-T cells showed obvious killing effects on the double-positive tumor target cell K562-A0201-3G5.
  • the cytotoxicity percentages of the two were close, which were 65.16 ⁇ 17.39% and 66.22 ⁇ 9.67% respectively.
  • PVL7 and PVLcon TCR-T cells had no obvious killing effect on K562 and were close to the negative control GFP TCR-T cells.
  • Example 6 In order to investigate the safety of PVL7 TCR, the ELISPOT method of Example 6 was used to conduct safety investigation on PBMC of 28 healthy people.
  • the 28 cases of healthy human PBMC included 7 cases with HLA-A*02:01 typing and 21 cases with non-HLA-A*02:01 typing ( Figure 13A).
  • the results are shown in Figure 13B.
  • the INF- ⁇ release results showed that PVL7 and PVLcon TCR-T cells had no obvious reaction with PBMC of healthy people.
  • the experimental animal strain in this example is B-NDG mice (Biocytogen Jiangsu Gene Biotechnology Co., Ltd., SPF grade), female, 4 to 6 weeks old.
  • the experimental animals were housed in an SPF-level animal center, and all technical indicators complied with GB14925-2010 barrier environment technical requirements.
  • the animals in this study will eat feed whose quality meets national standards and is within the validity period.
  • Their drinking water will be filtered and sterilized by the animal drinking pure water system or sterilized by high temperature and high pressure, and will be freely ingested from animal drinking bottles. All experimental animals were adaptively raised for 1 week before subsequent experiments were conducted.
  • each group was intraperitoneally injected with IL-2, 50,000 IU/animal, for 5 consecutive days.
  • the tumor diameter was measured on the day of grouping, and the long diameter (a) and short diameter (b) of the tumor were measured with a vernier caliper every 3 days.
  • the tumor volume was calculated according to the formula 1/2 ⁇ a ⁇ b 2 , and the tumor growth curve was drawn.
  • the animals were euthanized 18 days after administration, and the tumors were taken for photography.
  • PVL7 TCR-T cells can effectively kill tumor cells K562-A0201-3G5 and inhibit tumor growth.
  • the tumor growth curve of the GFP TCR-T group did not change significantly compared with the Model Control group.

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Abstract

Provided are a TCR specifically recognizing a PRAME antigen peptide and the use thereof. The CDR1, CDR2 and CDR3 of an α chain variable region of the TCR are respectively as shown in SEQ ID NO: 4, SEQ ID NO: 5 and SEQ ID NO: 6, and the CDR1, CDR2 and CDR3 of a β chain variable region of the TCR are respectively as shown in SEQ ID NO: 7, SEQ ID NO: 8 and SEQ ID NO: 9. The affinity K D value of the TCR to pMHC (HLA-A*02:01/VLDGLDVLL) can reach 1.3E-05M, and the TCR has a specific killing effect on HLA-A*02:01 +/PRAME + target cells (K562-A0201-3G5) in vitro and in vivo, and has no significant effect on other non-double-positive tumor cells or healthy human PBMCs.

Description

一种特异性识别PRAME抗原肽的TCR及其应用A TCR that specifically recognizes PRAME antigen peptide and its application
本申请要求申请日为2022年5月7日的中国专利申请202210495457.9的优先权。本申请引用上述中国专利申请的全文。This application claims the priority of Chinese patent application 202210495457.9 with a filing date of May 7, 2022. This application cites the full text of the above-mentioned Chinese patent application.
技术领域Technical field
本发明属于生物技术领域,涉及一种特异性识别PRAME抗原肽的TCR及其应用,具体为一种识别HLA-A*02:01/PRAME 100-108的TCR及其应用。 The invention belongs to the field of biotechnology and relates to a TCR that specifically recognizes PRAME antigen peptide and its application, specifically a TCR that recognizes HLA-A*02:01/PRAME 100-108 and its application.
背景技术Background technique
黑色素瘤特异性抗原(Preferentially Expressed Antigen of Melanoma,PRAME)是肿瘤癌睾抗原家族的一员,最初在黑色素瘤中发现,具有免疫原性,能被细胞毒性T淋巴细胞(简称T细胞)特异性识别并引发肿瘤溶解的表面抗原(Immunity,1997,6,199;Br J Haematol,1998,102,1376;J Exp Med,2001,193,73;Clin Cancer Res,2006,12,3130;Blood,2008,112,1876;Clin Cancer Res,2011,17,5615;Oncol Rep,2014,31,384;Cancer Res,2018,78,3337)。PRAME属于肿瘤相关抗原,在许多不同的癌症中高度表达,例如急慢性白血病、淋巴瘤、黑色素瘤、非小细胞肺癌、宫颈癌、肉瘤、头颈癌、肾细胞癌、乳腺癌等(Cancer Res,1998,58,4090;Cell,2005,122,835;Blood,2009,114,15;Oral Oncol,2013,49,144;Clin Cancer Res,2013,19,2562;Oncol Rep,2014,31,384;Immunol Invest,2016,45,619;Mol Ther Methods Clin Dev,2021,21,492),而在正常组织中几乎不表达或表达量极低(例如睾丸、肾上腺、卵巢和子宫内膜),因此PRAME是肿瘤免疫治疗中重要的潜在靶点(Biomark Med,2012,6,629;Cancers(Basel),2019,11,984)。VLDGLDVLL肽段(SEQ ID NO:1)在PRAME上位于100-108,可通过HLA-A*02:01分子进行递呈并被细胞毒性T淋巴细胞识别而产生效应,该肽段与HLA-A*02:01分子的结合亲和力是5.2μM,其复合物在37℃半衰减期为2.5h(J.Exp.Med.,2001,193,73)。Melanoma-specific antigen (Preferentially Expressed Antigen of Melanoma, PRAME) is a member of the tumor testis antigen family. It was originally discovered in melanoma. It is immunogenic and can be specifically targeted by cytotoxic T lymphocytes (referred to as T cells). Surface antigens that recognize and trigger tumor lysis (Immunity, 1997, 6, 199; Br J Haematol, 1998, 102, 1376; J Exp Med, 2001, 193, 73; Clin Cancer Res, 2006, 12, 3130; Blood, 2008, 112 , 1876; Clin Cancer Res, 2011, 17, 5615; Oncol Rep, 2014, 31, 384; Cancer Res, 2018, 78, 3337). PRAME is a tumor-associated antigen that is highly expressed in many different cancers, such as acute and chronic leukemia, lymphoma, melanoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma, breast cancer, etc. (Cancer Res, 1998,58,4090;Cell,2005,122,835;Blood,2009,114,15;Oral Oncol,2013,49,144;Clin Cancer Res,2013,19,2562;Oncol Rep,2014,31,384;Immunol Invest,2016,45,61 9 ; Mol Ther Methods Clin Dev, 2021, 21, 492), while it is hardly expressed or has very low expression in normal tissues (such as testis, adrenal gland, ovary and endometrium). Therefore, PRAME is an important potential target in tumor immunotherapy. (Biomark Med, 2012, 6, 629; Cancers (Basel), 2019, 11, 984). The VLDGLDVLL peptide (SEQ ID NO:1) is located at 100-108 on PRAME and can be presented through HLA-A*02:01 molecules and recognized by cytotoxic T lymphocytes to produce effects. This peptide is closely related to HLA-A *02:01 The binding affinity of the molecule is 5.2μM, and the half-decay period of the complex at 37°C is 2.5h (J.Exp.Med., 2001, 193,73).
T细胞受体基因工程改造的T细胞(T cell receptor gene engineered T cells,TCR-T)疗法是将肿瘤抗原特异性的TCR基因转导到正常T细胞中,能够增强或重新赋予该T细胞识别肿瘤抗原的能力,特异地靶向和杀伤肿瘤细胞,是当前过继性细胞治疗中重要的治疗方法(Immunol Rev,2014,257,56)。许多临床试验已经证明了TCR-T细胞疗法在治疗黑色素瘤、滑膜细胞肉瘤、骨髓瘤等恶性肿瘤中的有效性和安全性(Science,2006,314,126;J Clin Oncol,2011,29,917;Nat Med,2015,21,914;Blood,2017,130,1985;Cancer Discov, 2018,8,944)。截至2022年2月,clinicaltrials.gov网站上显示,针对PRAME靶点目前全球已开展10项临床试验,其中与TCR相关的疗法有5项(NCT02743611、NCT03503968、NCT03318900、NCT04262466、NCT03686124)。Immatics N.V.公司开发的PRAME TCR-T疗法的Ia期临床数据验证了该疗法的有效性和安全性(NCT03686124,J Immunother Cancer,2021,9(Suppl 2),A1009),为PRAME相关癌症的治疗提供一条新的途径。随着相关技术的发展和研究的不断深入,TCR-T疗法将逐渐向高效、低毒及可操控的方向发展,在提高疗效和安全性的同时也能带来临床应用的便捷性,从而为更多肿瘤患者带来治愈的希望。T cell receptor gene engineered T cells (TCR-T) therapy transduces tumor antigen-specific TCR genes into normal T cells, which can enhance or re-endow the T cells with recognition The ability of tumor antigens to specifically target and kill tumor cells is an important treatment method in current adoptive cell therapy (Immunol Rev, 2014, 257, 56). Many clinical trials have proven the effectiveness and safety of TCR-T cell therapy in the treatment of melanoma, synovial cell sarcoma, myeloma and other malignant tumors (Science, 2006, 314, 126; J Clin Oncol, 2011, 29, 917; Nat Med ,2015,21,914; Blood,2017,130,1985; Cancer Discov, 2018,8,944). As of February 2022, the clinicaltrials.gov website shows that 10 clinical trials have been carried out around the world for PRAME targets, including 5 TCR-related therapies (NCT02743611, NCT03503968, NCT03318900, NCT04262466, NCT03686124). The Phase Ia clinical data of PRAME TCR-T therapy developed by Immatics N.V. has verified the effectiveness and safety of the therapy (NCT03686124, J Immunother Cancer, 2021, 9 (Suppl 2), A1009), providing information for the treatment of PRAME-related cancers. A new way. With the development of relevant technologies and the continuous deepening of research, TCR-T therapy will gradually develop in the direction of high efficiency, low toxicity and controllability, which will not only improve the efficacy and safety, but also bring convenience to clinical application, thereby providing More cancer patients bring hope of cure.
发明内容Contents of the invention
本发明所要解决的技术问题是为克服现有技术中识别并结合PRAME抗原肽的TCR数量有限的缺陷,从而本发明提供一种特异性识别PRAME抗原肽的TCR,采用该TCR改造的T细胞通过高效识别HLA-A*02:01/PRAME 100-108靶点对肿瘤细胞进行特异性杀伤。 The technical problem to be solved by the present invention is to overcome the shortcoming of the limited number of TCRs that recognize and bind to the PRAME antigen peptide in the prior art. Therefore, the present invention provides a TCR that specifically recognizes the PRAME antigen peptide. T cells modified using this TCR pass through Efficiently recognizes HLA-A*02:01/PRAME 100-108 targets to specifically kill tumor cells.
主要组织相容性复合体(MHC)分子属于免疫球蛋白超家族成员,可以是I类或II类MHC分子。其对于抗原的呈递具有特异性,不同的个体有不同的MHC,能呈递一种蛋白抗原中不同的短肽到各自的抗原呈递细胞(APC)表面。人类的MHC通常称为HLA基因或HLA复合体。Major histocompatibility complex (MHC) molecules are members of the immunoglobulin superfamily and can be class I or class II MHC molecules. It is specific for the presentation of antigens. Different individuals have different MHCs and can present different short peptides in a protein antigen to the surface of their respective antigen-presenting cells (APC). Human MHC is often called HLA genes or HLA complexes.
T细胞受体(TCR),是呈递在MHC上的特异性抗原的唯一受体。在免疫系统中,通过抗原特异性的TCR与pMHC复合物的结合引发T细胞与APC直接的物理接触,然后T细胞及APC两者的其他细胞膜表面分子发生相互作用,引起一系列后续的细胞信号传递和其他生理反应,从而使得不同抗原特异性的T细胞对其靶细胞发挥免疫效应。T cell receptor (TCR) is the only receptor for specific antigens presented on MHC. In the immune system, the combination of antigen-specific TCR and pMHC complex triggers direct physical contact between T cells and APC, and then other cell membrane surface molecules of T cells and APC interact, causing a series of subsequent cell signals. transmission and other physiological responses, allowing T cells with different antigen specificities to exert immune effects on their target cells.
TCR是T淋巴细胞识别抗原的功能单位,属免疫球蛋白超级家族,其编码链包括α、β、γ和δ四条链,TCR是由α链/β链或者γ链/δ链以异质二聚体形式存在的细胞膜表面的糖蛋白。外周血95%的TCR是由α和β两条多肽链构成的异源二聚体。但重组TCR还可以由一条单独的TCRβ链或者TCRα链组成,其已被证明能够结合抗原肽-MHC分子(WO 2005/113595)。TCR is a functional unit for T lymphocytes to recognize antigens. It belongs to the immunoglobulin superfamily. Its coding chain includes four chains: α, β, γ and δ. TCR is composed of α chain/β chain or γ chain/δ chain with heterogeneous two chains. Glycoproteins on the surface of cell membranes that exist in aggregate form. 95% of TCRs in peripheral blood are heterodimers composed of two polypeptide chains, α and β. However, recombinant TCR can also be composed of a single TCRβ chain or TCRα chain, which has been shown to be able to bind antigen peptide-MHC molecules (WO 2005/113595).
广义上讲,α和β各链包含可变区、连接区和恒定区,β链通常还在可变区和连接区之间含有短的多变区,但该多变区常被视作连接区的一部分。各可变区包含嵌合在框架结构(framework regions)中的3个CDR(互补决定区),CDR1、CDR2和CDR3。CDR区决定了TCR与pMHC复合物的结合,其中CDR3由可变区和连接区重组而成,被称为超 变区。TCR的α和β链一般看作各有两个"结构域"即可变域和恒定域,可变域由连接的可变区和连接区构成。TCR恒定域的序列可以在国际免疫遗传学信息系统(IMGT)的公开数据库中找到,如TCR分子α链的恒定域序列为TRAC(也可称为TRAC*01),TCR分子β链的恒定域序列为TRBC1(也可称为TRBC1*01)或TRBC2(也可称为TRBC2*01)。此外,TCR的α和β链还包含跨膜区和胞质区,胞质区很短。Broadly speaking, each α and β chain contains a variable region, a connecting region, and a constant region. The β chain usually also contains a short variable region between the variable region and the connecting region, but this variable region is often regarded as a connecting region. part of the district. Each variable region contains three CDRs (complementary determining regions), CDR1, CDR2 and CDR3, embedded in framework regions. The CDR region determines the binding of TCR to the pMHC complex, in which CDR3 is recombined from the variable region and the connecting region and is called the hypervariable region. The α and β chains of TCR are generally regarded as having two "domains" each, namely a variable domain and a constant domain. The variable domain is composed of connected variable regions and connecting regions. The sequence of the TCR constant domain can be found in the public database of the International Immunogenetic Information System (IMGT). For example, the constant domain sequence of the α chain of the TCR molecule is TRAC (also known as TRAC*01), and the constant domain sequence of the β chain of the TCR molecule The sequence is TRBC1 (also known as TRBC1*01) or TRBC2 (also known as TRBC2*01). In addition, the α and β chains of TCR also contain a transmembrane region and a cytoplasmic region, and the cytoplasmic region is very short.
另外,α链由胚系基因中TRAV、TRAJ、TRAC重排组成;β链由胚系基因中的TRBV、TRBD、TRBJ、TRBC重排组成,不同V(D)J重排后,由V-J(或V-D和D-J)连接时随机插入不同数量的核苷酸形成一个可变化的区域(N)成为互补决定区3(CDR3),这种随机插入使TCRα链和β链序列呈现高度多样性;不同克隆T淋巴细胞的TCR重排时CDR3长度和碱基序列不同,这是TCR特异地识别抗原的区域,它决定了TCR的特异性。In addition, the α chain is composed of TRAV, TRAJ, and TRAC rearrangements in germline genes; the β chain is composed of TRBV, TRBD, TRBJ, and TRBC rearrangements in germline genes. After different V(D)J rearrangements, it is composed of V-J( When connecting (or V-D and D-J), different numbers of nucleotides are randomly inserted to form a variable region (N) that becomes the complementarity determining region 3 (CDR3). This random insertion makes the TCR alpha chain and beta chain sequences highly diverse; different When the TCR of clonal T lymphocytes is rearranged, the CDR3 length and base sequence are different. This is the region where the TCR specifically recognizes the antigen, which determines the specificity of the TCR.
需注意的是,本发明中CDR1~CDR3以及FR1~FR4在TCR全长序列中位置的确定是根据IMGT命名法定义,该定义是众所周知的,可在IMGT公共数据中找到,“T cell Receptor Factsbook,(2001)LeFranc和LeFanc,Acdamic出版社,ISBN 0-12-441352-8”也公开了由IMGT命名法定义的序列。但是,本领域人员公知,在本领域中可以通过多种方法来定义TCR的CDR,因此,在涉及用本发明定义的具体CDR序列限定TCR时,所述TCR的范围还涵盖了这样的TCR,其可变区序列包含所述的具体CDR序列,但是由于应用了不同的方案(例如不同的指派系统规则或组合)而导致其所声称的CDR边界与本发明所定义的具体CDR边界不同。It should be noted that in the present invention, the positions of CDR1 ~ CDR3 and FR1 ~ FR4 in the TCR full-length sequence are determined according to the IMGT nomenclature. This definition is well known and can be found in the IMGT public data, "T cell Receptor Factsbook , (2001) LeFranc and LeFanc, Acdamic Press, ISBN 0-12-441352-8" also discloses sequences defined by the IMGT nomenclature. However, it is well known to those in the art that the CDRs of a TCR can be defined in a variety of ways in the art. Therefore, when it comes to defining a TCR with a specific CDR sequence defined in the present invention, the scope of the TCR also covers such TCR, Its variable region sequence contains the specific CDR sequence, but due to the application of different schemes (such as different assignment system rules or combinations), the claimed CDR boundaries are different from the specific CDR boundaries defined in the present invention.
本发明的技术方案之一为:一种TCR,所述TCR包含α链和/或β链,所述α链包含α链可变区,所述β链包含β链可变区,所述α链可变区的CDR3包含如SEQ ID NO:6所示的氨基酸序列,和/或所述β链可变区的CDR3包含如SEQ ID NO:9所示的氨基酸序列。One of the technical solutions of the present invention is: a TCR, the TCR includes an α chain and/or a β chain, the α chain includes an α chain variable region, the β chain includes a β chain variable region, and the α chain The CDR3 of the chain variable region includes the amino acid sequence shown in SEQ ID NO:6, and/or the CDR3 of the β chain variable region includes the amino acid sequence shown in SEQ ID NO:9.
在本发明一优选实施方案中,所述α链可变区的CDR1和CDR2分别包含如SEQ ID NO:4和SEQ ID NO:5所示的氨基酸序列,和/或所述β链可变区的CDR1和CDR2分别包含如SEQ ID NO:7和SEQ ID NO:8所示的氨基酸序列。In a preferred embodiment of the present invention, the CDR1 and CDR2 of the alpha chain variable region comprise the amino acid sequences shown in SEQ ID NO:4 and SEQ ID NO:5 respectively, and/or the beta chain variable region The CDR1 and CDR2 contain the amino acid sequences shown in SEQ ID NO:7 and SEQ ID NO:8 respectively.
在本发明一优选实施方案中,所述α链可变区的CDR1、CDR2和CDR3分别包含如SEQ ID NO:4、SEQ ID NO:5和SEQ ID NO:6所示的氨基酸序列,且所述β链可变区的CDR1、CDR2和CDR3分别包含如SEQ ID NO:7、SEQ ID NO:8和SEQ ID NO:9所示的氨基酸序列。In a preferred embodiment of the present invention, the CDR1, CDR2 and CDR3 of the alpha chain variable region respectively comprise the amino acid sequences shown in SEQ ID NO:4, SEQ ID NO:5 and SEQ ID NO:6, and the The CDR1, CDR2 and CDR3 of the β chain variable region respectively include the amino acid sequences shown in SEQ ID NO:7, SEQ ID NO:8 and SEQ ID NO:9.
在本发明一具体实施方案中,所述α链可变区的CDR1、CDR2和CDR3的氨基酸序列分别如SEQ ID NO:4、SEQ ID NO:5和SEQ ID NO:6所示,且所述β链可变区的 CDR1、CDR2和CDR3的氨基酸序列分别如SEQ ID NO:7、SEQ ID NO:8和SEQ ID NO:9所示。In a specific embodiment of the present invention, the amino acid sequences of CDR1, CDR2 and CDR3 of the α chain variable region are shown in SEQ ID NO: 4, SEQ ID NO: 5 and SEQ ID NO: 6 respectively, and the The amino acid sequences of CDR1, CDR2 and CDR3 of the β chain variable region are shown in SEQ ID NO:7, SEQ ID NO:8 and SEQ ID NO:9 respectively.
根据本发明,本发明的TCR可以为多种形式的抗原结合结构,可以是天然的、也可以是突变体,可以是全长的、也可以是抗原结合片段例如TCR单链(α链或β链)或scTCR(TCRα链可变区及TCRβ链可变区通过短肽接头构成)等。According to the present invention, the TCR of the present invention can be a variety of forms of antigen-binding structures, and can be natural or mutant, full-length, or antigen-binding fragments such as TCR single chains (α chain or β chain). chain) or scTCR (TCRα chain variable region and TCRβ chain variable region are composed of short peptide linkers), etc.
本发明中所述TCR的α链和/或β链优选还包含框架区(FR);其中:The α chain and/or β chain of the TCR in the present invention preferably further includes a framework region (FR); wherein:
所述α链的框架区来源于TRAV和TRAJ,其中所述TRAV优选种系TRAV20,所述TRAJ优选种系TRAJ36。The framework region of the α chain is derived from TRAV and TRAJ, wherein the TRAV is preferably germline TRAV20, and the TRAJ is preferably germline TRAJ36.
所述β链的框架区来源于TRBV、TRBD和TRBJ,所述TRBV优选种系TRBV7-8,所述TRBD优选种系TRBD1,所述TRBJ优选种系TRBJ2-3。The framework region of the β chain is derived from TRBV, TRBD and TRBJ. The TRBV is preferably the germline TRBV7-8, the TRBD is preferably the germline TRBD1, and the TRBJ is preferably the germline TRBJ2-3.
在本发明一较佳实施方案中,所述TCR的α链可变区含有如SEQ ID NO:10或其衍生序列所示的氨基酸序列。In a preferred embodiment of the present invention, the alpha chain variable region of the TCR contains the amino acid sequence shown in SEQ ID NO: 10 or its derivative sequence.
在本发明另一较佳实施方案中,所述TCR的β链可变区含有如SEQ ID NO:12或其衍生序列所示的氨基酸序列。In another preferred embodiment of the present invention, the β-chain variable region of the TCR contains the amino acid sequence shown in SEQ ID NO: 12 or its derivative sequence.
在本发明一具体实施方案中,所述α链可变区的氨基酸序列如SEQ ID NO:10或其衍生序列所示,且所述β链可变区的氨基酸序列如SEQ ID NO:12或其衍生序列所示。In a specific embodiment of the present invention, the amino acid sequence of the alpha chain variable region is as shown in SEQ ID NO: 10 or its derivative sequence, and the amino acid sequence of the beta chain variable region is as shown in SEQ ID NO: 12 or Its derivative sequence is shown.
所述衍生序列与原序列的同一性为89%、90%、91%、92%、93%、94%、95%、96%、97%、98%或者99%以上,且保留与原序列相同的功能。The identity of the derived sequence to the original sequence is 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or more, and remains identical to the original sequence Same functionality.
本发明中所述TCR的α链较佳地还包含恒定区,所述α链的恒定区优选来源于人种系。The α chain of the TCR in the present invention preferably further includes a constant region, and the constant region of the α chain is preferably derived from the human germline.
在本发明一较佳实施方案中,所述α链的恒定区来源于TRAC。In a preferred embodiment of the present invention, the constant region of the α chain is derived from TRAC.
本发明中所述TCR的β链较佳地还包含恒定区,所述β链的恒定区优选来源于人种系。The β chain of the TCR in the present invention preferably further includes a constant region, and the constant region of the β chain is preferably derived from the human germline.
在本发明一较佳实施方案中,所述β链的恒定区来源于TRBC。In a preferred embodiment of the present invention, the constant region of the β chain is derived from TRBC.
在本发明一更佳实施方案中,所述TRBC为种系TRBC2。In a more preferred embodiment of the invention, the TRBC is germline TRBC2.
在本发明一具体实施方案中,来源于人种系的α链的恒定区的氨基酸序列如SEQ ID NO:11所示。In a specific embodiment of the present invention, the amino acid sequence of the constant region of the alpha chain derived from the human germline is shown in SEQ ID NO: 11.
在本发明一具体实施方案中,来源于人种系的β链的恒定区的氨基酸序列如SEQ ID NO:13所示。In a specific embodiment of the present invention, the amino acid sequence of the constant region of the beta chain derived from the human germline is shown in SEQ ID NO: 13.
此外,本发明中所述的α链还可包括膜外区和跨膜区;较佳地,所述的α链还包括胞内序列。In addition, the α chain described in the present invention may also include an extramembrane region and a transmembrane region; preferably, the α chain also includes an intracellular sequence.
所述β链也还可包括膜外区和跨膜区;较佳地,所述的β链还包括胞内序列。The β chain may also include an extramembrane region and a transmembrane region; preferably, the β chain also includes an intracellular sequence.
在本发明一具体实施方案中,含有信号肽的所述TCR的α链的氨基酸序列如SEQ ID NO:2所示,其中信号肽位于具体序列的第1~21位;和/或,含有信号肽的所述TCR的β链的氨基酸序列如SEQ ID NO:3所示,其中信号肽位于具体序列的第1~19位。In a specific embodiment of the present invention, the amino acid sequence of the α chain of the TCR containing a signal peptide is shown in SEQ ID NO: 2, wherein the signal peptide is located at positions 1 to 21 of the specific sequence; and/or, contains a signal The amino acid sequence of the β chain of the TCR of the peptide is shown in SEQ ID NO: 3, in which the signal peptide is located at positions 1 to 19 of the specific sequence.
如本领域技术人员所知,信号肽位于翻译后蛋白的N端,引导蛋白质到指定的表达地点,故本发明上述α链、β链发挥功能的全长序列中并不包含信号肽,因此上述信号肽序列并不限定本发明上述α链、β链的全长氨基酸序列;而且具体应用时,信号肽可以进行调整,本发明并不仅限于上述具体实施方案中的信号肽序列。As those skilled in the art know, the signal peptide is located at the N-terminus of the post-translational protein and guides the protein to the designated expression site. Therefore, the full-length sequence of the α chain and β chain in the present invention does not contain the signal peptide, so the above-mentioned The signal peptide sequence does not limit the full-length amino acid sequence of the above-mentioned α chain and β chain of the present invention; and in specific applications, the signal peptide can be adjusted, and the present invention is not limited to the signal peptide sequence in the above-mentioned specific embodiments.
本发明的技术方案之二为:一种分离的核酸,其编码如本发明技术方案之一所述的TCR。The second technical solution of the present invention is: an isolated nucleic acid encoding the TCR as described in the first technical solution of the present invention.
本发明的技术方案之三为:一种包含如技术方案之二所述核酸的载体,所述的载体优选慢病毒载体;所述的核酸在单个开放阅读框中,或者在两个不同的开放阅读框中分别编码TCRα链和TCRβ链。The third technical solution of the present invention is: a vector containing the nucleic acid as described in the second technical solution, the vector is preferably a lentiviral vector; the nucleic acid is in a single open reading frame, or in two different open reading frames. The reading frames encode TCRα chain and TCRβ chain respectively.
如本发明所用,“载体”表示构建体,其能够将一种或多种所关注的基因或序列递送入宿主细胞并且优选在宿主细胞中表达所述基因或序列。载体的实例包括但不限于病毒载体、裸DNA或RNA表达载体、质粒、粘粒或噬菌体载体、与阳离子凝聚剂相关的DNA或RNA表达载体、包囊化于脂质体中的DNA或RNA表达载体以及某些真核细胞,例如生产细胞。用于预防或治疗时所述载体通常选用病毒载体,可包括但不限于,慢病毒载体、逆转录病毒载体、腺病毒载体、腺伴随病毒载体和单纯殖痊病毒载体。更具体而言,如实施例中所述,可以使用慢病毒载体在体外、离体或体内递送所述构建体。As used herein, "vector" means a construct capable of delivering one or more genes or sequences of interest into a host cell and preferably expressing the genes or sequences in the host cell. Examples of vectors include, but are not limited to, viral vectors, naked DNA or RNA expression vectors, plasmid, cosmid or phage vectors, DNA or RNA expression vectors associated with cationic coagulants, DNA or RNA expression encapsulated in liposomes vectors as well as certain eukaryotic cells, such as producer cells. When used for prevention or treatment, viral vectors are usually used as vectors, which may include, but are not limited to, lentiviral vectors, retroviral vectors, adenoviral vectors, adeno-associated virus vectors and simplex virus vectors. More specifically, as described in the Examples, lentiviral vectors can be used to deliver the constructs in vitro, ex vivo or in vivo.
本发明还涉及用本发明的载体或编码序列经基因工程产生的宿主细胞。所述宿主细胞中含有本发明的载体或染色体中整合有本发明的核酸分子。宿主细胞选自:原核细胞和真核细胞,例如大肠杆菌、酵母细胞、CHO细胞、293T细胞等。用于预防或治疗时,所述宿主细胞可为本领域常规使用的T淋巴细胞、造血干细胞等。The invention also relates to host cells genetically engineered using the vectors or coding sequences of the invention. The host cell contains the vector of the present invention or the nucleic acid molecule of the present invention is integrated into the chromosome. Host cells are selected from: prokaryotic cells and eukaryotic cells, such as Escherichia coli, yeast cells, CHO cells, 293T cells, etc. When used for prevention or treatment, the host cells can be T lymphocytes, hematopoietic stem cells, etc. commonly used in this field.
本发明还包括表达本发明的TCR的分离的细胞,特别是T细胞。该T细胞可衍生自从受试者分离的T细胞,或者可以是从受试者中分离的混合细胞群,诸如外周血淋巴细胞(PBL)群的一部分。如该细胞可以分离自外周血单核细胞(PBMC),可以是CD4 +辅助T细胞或CD8 +细胞毒性T细胞。该细胞可在CD4 +辅助T细胞/CD8 +细胞毒性T细胞的混合群中。一般地,该细胞可以用抗体(如抗-CD3或抗-CD28的抗体)活化,以便使它们能够更容易接受转染,例如用包含编码本发明TCR分子的核苷酸序列的载体进行转染。 The invention also includes isolated cells, particularly T cells, expressing the TCR of the invention. The T cells may be derived from T cells isolated from the subject, or may be part of a mixed cell population isolated from the subject, such as a peripheral blood lymphocyte (PBL) population. For example, the cells can be isolated from peripheral blood mononuclear cells (PBMC) and can be CD4 + helper T cells or CD8 + cytotoxic T cells. The cells may be in a mixed population of CD4 + helper T cells/CD8 + cytotoxic T cells. Generally, the cells can be activated with antibodies (such as anti-CD3 or anti-CD28 antibodies) to render them more receptive to transfection, e.g., with a vector containing a nucleotide sequence encoding a TCR molecule of the invention. .
一旦已经制备了用于表达的表达载体或DNA序列,则可以将表达载体转染或引入适 宜的宿主细胞中。多种技术可以用来实现这个目的,例如,原生质体融合、磷酸钙沉淀、电穿孔、逆转录病毒的转导、病毒转染、基因枪、基于脂质的转染或其他常规技术。在原生质体融合的情况下,将细胞在培养基中培育并且筛选适宜的活性。用于培养所产生的转染细胞和用于回收产生的TCR分子的方法和条件是本领域技术人员已知的并且可以基于本说明书和现有技术已知的方法,根据使用的特定表达载体和哺乳动物宿主细胞变动或优化。另外,可以通过引入允许选择已转染的宿主细胞的一个或多个标记物,选出已经稳定将DNA掺入至其染色体中的细胞。标记物可以例如向营养缺陷型宿主提供原养型、杀生物抗性(例如,抗生素)或重金属(如铜)抗性等。可选择标记基因可以与待表达的DNA序列直接连接或通过共转化引入相同的细胞中。也可能需要额外元件以便最佳合成mRNA。这些元件可以包括剪接信号,以及转录启动子、增强子和终止信号。Once the expression vector or DNA sequence for expression has been prepared, the expression vector can be transfected or introduced into a suitable host cell. A variety of techniques can be used to achieve this purpose, for example, protoplast fusion, calcium phosphate precipitation, electroporation, retroviral transduction, viral transfection, gene gun, lipid-based transfection or other conventional techniques. In the case of protoplast fusion, cells are grown in culture medium and screened for appropriate activity. The methods and conditions for culturing the transfected cells produced and for recovering the TCR molecules produced are known to those skilled in the art and can be based on the present description and methods known from the prior art, depending on the specific expression vector used and Mammalian host cell changes or optimizations. Additionally, cells that have stably incorporated DNA into their chromosomes can be selected by introducing one or more markers that allow selection of transfected host cells. Markers may, for example, provide prototrophy, biocidal resistance (eg, antibiotics), or heavy metal (eg, copper) resistance to an auxotrophic host, etc. The selectable marker gene can be directly linked to the DNA sequence to be expressed or introduced into the same cell by co-transformation. Additional components may also be required for optimal synthesis of mRNA. These elements may include splicing signals, as well as transcription promoters, enhancers, and termination signals.
本发明的技术方案之四为:一种含有如技术方案之二所述的核酸或者如技术方案之三所述的载体的细胞;较佳地,所述的细胞为T细胞或者干细胞,所述的T细胞优选CD8 +T细胞。 The fourth technical solution of the present invention is: a cell containing the nucleic acid as described in the second technical solution or the vector as described in the third technical solution; preferably, the cells are T cells or stem cells, and the The T cells are preferably CD8 + T cells.
本发明的技术方案之五为:一种提呈如技术方案之一所述的TCR的分离的或非天然存在的细胞,所述的细胞优选T细胞。The fifth technical solution of the present invention is: an isolated or non-naturally occurring cell that presents the TCR as described in one of the technical solutions, and the cell is preferably a T cell.
在本发明中术语“细胞”可包括已经引入外源性核酸的细胞,包括这些细胞的子代。细胞包括“转化子”和“转化的细胞”,其包括原代转化细胞以及由此来源的子代,而不考虑传代次数。子代在核酸含量上与亲代细胞可能不完全相同,但可能含有突变。本发明包括与在初始转化的细胞中筛选或选择的细胞具有相同功能或生物学活性的突变子代。The term "cell" in the present invention may include cells into which exogenous nucleic acid has been introduced, including the progeny of these cells. Cells include "transformants" and "transformed cells," which include primary transformed cells and progeny derived therefrom, regardless of passage number. The progeny may not be identical in nucleic acid content to the parent cells, but may contain mutations. The present invention includes mutant progeny that have the same function or biological activity as the cells screened or selected in the initially transformed cells.
本发明的技术方案之六为:一种药物组合物,其含有如技术方案之一所述的TCR或者技术方案之四所述的细胞;较佳地,所述的药物组合物还包含药物上可接受的载体。The sixth technical solution of the present invention is: a pharmaceutical composition, which contains the TCR as described in the first technical solution or the cells described in the fourth technical solution; preferably, the pharmaceutical composition also includes a pharmaceutical composition. Acceptable carrier.
在一些实施方案中,本发明的药物组合物包含合适的药学上可接受的载体例如药用辅料,如本领域中已知的药用载体、药用赋形剂,包括缓冲剂。如本发明所用,“药学上可接受的载体”或“药用载体”包括生理上相容的任何和全部溶剂、分散介质、等渗剂和吸收延迟剂等。适用于本发明的药用载体可以是无菌液体,如水和油。当静脉内施用药物组合物时,水是优选的载体。还可以将盐水溶液和水性右旋糖以及甘油溶液用作液体载体,特别是用于可注射溶液。合适的赋形剂包括淀粉、葡萄糖、乳糖、蔗糖、明胶、麦芽、米、面粉、白垩、硅胶、硬脂酸钠、甘油单硬脂酸酯、滑石、氯化钠、干燥的脱脂乳、甘油、丙烯、二醇、水、乙醇等。对于赋形剂的使用及其用途,亦参见“Handbook of PharmaceuticalExcipients”,第五版,R.C.Rowe,P.J.Seskey和S.C.Owen,Pharmaceutical  Press,London,Chicago。若期望的话,所述组合物还可以含有少量的润湿剂或乳化剂,或pH缓冲剂。这些组合物可以采用溶液、悬浮液、乳剂、片剂、丸剂、胶囊剂、粉末、持续释放配制剂等的形式。口服配制剂可以包含标准药用载体和/或赋形剂,如药用级甘露醇、乳糖、淀粉、硬脂酸镁、糖精。可以通过将具有所需纯度的本发明的TCR与一种或多种任选的药用辅料(Remington’s Pharmaceutical Sciences,第16版,Osol,A.编(1980))混合来制备包含本发明所述的药物制剂或药物组合物,优选地以冻干制剂或水溶液的形式。本发明的药物组合物或制剂还可以包含超过一种活性成分,所述活性成分是被治疗的特定适应症所需的,优选具有不会不利地彼此影响的互补活性的那些活性成分。例如,理想的是还提供其它抗肿瘤活性成分,例如其它TCR、抗体、抗肿瘤活性剂、小分子药物或免疫调节剂等。所述活性成分以对于目的用途有效的量合适地组合存在。可制备持续释放制剂。持续释放制剂的合适实例包括含有本发明的TCR或其抗原结合片段的固体疏水聚合物的半渗透基质,所述基质呈成形物品,例如薄膜或微囊形式。In some embodiments, the pharmaceutical compositions of the present invention include suitable pharmaceutically acceptable carriers such as pharmaceutical excipients, such as pharmaceutical carriers, pharmaceutical excipients, including buffers known in the art. As used herein, "pharmaceutically acceptable carrier" or "pharmaceutically acceptable carrier" includes any and all solvents, dispersion media, isotonic and absorption delaying agents, and the like that are physiologically compatible. Pharmaceutical carriers suitable for use in the present invention can be sterile liquids such as water and oils. When administering pharmaceutical compositions intravenously, water is the preferred carrier. Saline solutions and aqueous dextrose and glycerol solutions may also be used as liquid carriers, particularly for injectable solutions. Suitable excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glyceryl monostearate, talc, sodium chloride, dry skim milk, glycerin , propylene, glycol, water, ethanol, etc. For the use of excipients and their uses, see also "Handbook of Pharmaceutical Excipients", fifth edition, R.C. Rowe, P.J. Seskey and S.C. Owen, Pharmaceutical Press, London, Chicago. If desired, the compositions can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. These compositions may take the form of solutions, suspensions, emulsions, tablets, pills, capsules, powders, sustained release formulations, and the like. Oral formulations may contain standard pharmaceutical carriers and/or excipients such as pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, saccharin. The compositions of the present invention can be prepared by mixing the TCR of the present invention with the desired purity with one or more optional pharmaceutical excipients (Remington's Pharmaceutical Sciences, 16th edition, Osol, A. Ed. (1980)). The pharmaceutical preparation or pharmaceutical composition is preferably in the form of a lyophilized preparation or aqueous solution. The pharmaceutical compositions or preparations of the present invention may also contain more than one active ingredient required for the particular indication being treated, preferably those having complementary activities that do not adversely affect each other. For example, it is ideal to also provide other anti-tumor active ingredients, such as other TCRs, antibodies, anti-tumor active agents, small molecule drugs or immunomodulators, etc. The active ingredients are suitably present in combination in amounts effective for the intended use. Sustained release formulations can be prepared. Suitable examples of sustained release formulations include semi-permeable matrices of solid hydrophobic polymers containing the TCR or antigen-binding fragments thereof of the invention in the form of shaped articles, such as films or microcapsules.
本发明的技术方案之七为:一种如技术方案之一所述TCR、如技术方案四所述的细胞或者技术方案之六所述的药物组合物在制备防治PRAME表达相关的肿瘤的药物中的应用;较佳地,所述的肿瘤包括黑色素瘤、急慢性白血病、淋巴瘤、非小细胞肺癌、宫颈癌、肉瘤、头颈癌、肾细胞癌和乳腺癌。The seventh technical solution of the present invention is: a TCR as described in technical solution one, a cell as described in technical solution four, or a pharmaceutical composition as described in technical solution six in the preparation of drugs for preventing and treating tumors related to PRAME expression. Application; Preferably, the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
本发明的技术方案之八为:一种治疗和/或预防PRAME表达相关的肿瘤的方法,所述方法包括向有需要的患者施用治疗有效量的如技术方案之一所述TCR、如技术方案四所述的细胞或者技术方案之六所述的药物组合物。The eighth technical solution of the present invention is: a method for treating and/or preventing PRAME expression-related tumors, which method includes administering to a patient in need a therapeutically effective amount of the TCR described in one of the technical solutions, such as the technical solution The cells described in claim 4 or the pharmaceutical composition described in claim 6.
在本发明的优选实施方案中,所述肿瘤包括黑色素瘤、急慢性白血病、淋巴瘤、非小细胞肺癌、宫颈癌、肉瘤、头颈癌、肾细胞癌和乳腺癌。In preferred embodiments of the invention, the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
如本发明所用,术语“有效量”表示引发例如研究者或临床医师所追求的组织、系统、动物或人的生物学或药学响应的药物或药剂的量。此外,术语“治疗有效量”表示,与没有接受该量的相应受试者相比,引起疾病、病症或副作用的改进治疗、治愈、预防或减轻的量,或者使疾病或病况的进展速率降低的量。该术语在其范围内还包括有效增强正常生理功能的量。As used herein, the term "effective amount" means an amount of a drug or agent that elicits the biological or pharmaceutical response in a tissue, system, animal, or human, for example, that is sought by a researcher or clinician. Furthermore, the term "therapeutically effective amount" means an amount that results in improved treatment, cure, prevention, or alleviation of a disease, condition, or side effect, or a reduced rate of progression of a disease or condition, as compared to a corresponding subject who does not receive such amount. amount. The term also includes within its scope amounts effective to enhance normal physiological functions.
本发明的技术方案之九为:一种联合疗法,其包括分别向有需要的患者施用如技术方案之一所述TCR、如技术方案四所述的细胞或者技术方案之六所述的药物组合物,和第二治疗剂;所述第二治疗剂较佳地包含其他抗肿瘤活性成分,例如其它TCR、抗体、抗肿瘤活性剂、小分子药物或免疫调节剂等。The ninth technical solution of the present invention is: a combination therapy, which includes administering to a patient in need the TCR described in one technical solution, the cell described in technical solution four, or the drug combination described in technical solution six. substance, and a second therapeutic agent; the second therapeutic agent preferably contains other anti-tumor active ingredients, such as other TCRs, antibodies, anti-tumor active agents, small molecule drugs or immunomodulators, etc.
本发明的技术方案之十为:将如技术方案之一所述TCR、如技术方案四所述的细胞 或者技术方案之六所述的药物组合物用于治疗和/或预防PRAME表达相关的肿瘤。The tenth technical solution of the present invention is to use the TCR as described in technical solution one, the cell as described in technical solution four, or the pharmaceutical composition as described in technical solution six for the treatment and/or prevention of tumors related to PRAME expression. .
在本发明的优选实施方案中,所述肿瘤包括黑色素瘤、急慢性白血病、淋巴瘤、非小细胞肺癌、宫颈癌、肉瘤、头颈癌、肾细胞癌和乳腺癌。In preferred embodiments of the invention, the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
本发明的积极进步效果在于:The positive progressive effects of the present invention are:
本发明的TCR与pMHC(HLA-A*02:01/VLDGLDVLL)的亲和力K D值达1.3E-05M,对HLA-A*02:01 +/PRAME +靶细胞(K562-A0201-3G5)在体外和体内均有特异性的杀伤作用,而对其他非双阳性肿瘤细胞或健康人PBMC无明显作用。 The affinity K D value of the TCR of the present invention and pMHC (HLA-A*02:01/VLDGLDVLL) reaches 1.3E-05M, and the affinity to HLA-A*02:01 + /PRAME + target cells (K562-A0201-3G5) is It has specific killing effects in vitro and in vivo, but has no obvious effect on other non-double-positive tumor cells or healthy human PBMC.
附图说明Description of the drawings
图1为PRAME 100-108抗原特异性双阳单克隆CD8 +T细胞的分选过程。 Figure 1 shows the sorting process of PRAME 100-108 antigen-specific double-positive monoclonal CD8 + T cells.
图2A和图2B为PVL7 TCR复性后的阴离子交换层析和SDS-PAGE电泳图。Figure 2A and Figure 2B show the anion exchange chromatography and SDS-PAGE electrophoresis images of PVL7 TCR after renaturation.
图3A和图3B为PVL7 TCR复性后的凝胶过滤层析和SDS-PAGE电泳图。Figure 3A and Figure 3B show the gel filtration chromatography and SDS-PAGE electrophoresis images of PVL7 TCR after renaturation.
图4A和图4B为HLA-A*02:01/β2M/VLDGLDVLL复性后的阴离子交换层析和SDS-PAGE电泳图;其中,分子量大的条带为HLA-A*02:01,分子量小的条带为β2M,VLDGLDVLL多肽因分子量太小,SDS-PAGE上无法看到条带。Figure 4A and Figure 4B show the anion exchange chromatography and SDS-PAGE electrophoresis images of HLA-A*02:01/β2M/VLDGLDVLL after renaturation; among them, the band with large molecular weight is HLA-A*02:01 and the band with small molecular weight The band is β2M, and the VLDGLDVLL polypeptide cannot see the band on SDS-PAGE because its molecular weight is too small.
图5为HLA-A*02:01/β2M/VLDGLDVLL复性后的凝胶过滤层析图。Figure 5 shows the gel filtration chromatogram of HLA-A*02:01/β2M/VLDGLDVLL after renaturation.
图6为PRAME-pMHC生物素化后的Gel Shift图。Figure 6 shows the Gel Shift diagram after biotinylation of PRAME-pMHC.
图7为PVL7 TCR亲和力测试结果图。Figure 7 shows the results of the PVL7 TCR affinity test.
图8为PVL7 TCR慢病毒感染CD8 +T细胞的阳性率结果图;其中,PVLcon为阳性TCR对照组,GFP为阴性对照组。 Figure 8 shows the results of the positivity rate of CD8 + T cells infected with PVL7 TCR lentivirus; PVLcon is the positive TCR control group and GFP is the negative control group.
图9A、图9B和图9C为PVL7 TCR对负载PRAME 100-108、NY-ESO-1 157-165或HPV16-E6 29-38多肽的T 2细胞的INF-γ释放图。 Figure 9A, Figure 9B and Figure 9C are the INF-γ release diagrams of PVL7 TCR on T 2 cells loaded with PRAME 100-108 , NY-ESO-1 157-165 or HPV16-E6 29-38 polypeptides.
图10为构建K562-A0201单克隆细胞流式检测图。Figure 10 is a flow cytometry diagram of the constructed K562-A0201 monoclonal cells.
图11为PVL7 TCR对不同肿瘤细胞系的INF-γ释放图。Figure 11 shows the INF-γ release graph of PVL7 TCR on different tumor cell lines.
图12为PVL7 TCR对不同肿瘤细胞系LDH特异性杀伤实验结果图。Figure 12 shows the results of PVL7 TCR specific killing experiments on LDH in different tumor cell lines.
图13A和图13B为PVL7 TCR对28例不同HLA-A分型健康人PBMC的INF-γ释放图。Figure 13A and Figure 13B show the INF-γ release diagram of PVL7 TCR on PBMC of 28 healthy people with different HLA-A types.
图14为PVL7 TCR-T动物实验的肿瘤生长曲线。Figure 14 shows the tumor growth curve of PVL7 TCR-T animal experiments.
图15为PVL7 TCR-T细胞给药18天后小鼠的瘤体情况。Figure 15 shows the tumor status of mice after 18 days of administration of PVL7 TCR-T cells.
具体实施方式Detailed ways
下面通过实施例的方式进一步说明本发明,但并不因此将本发明限制在所述的实施例范围之中。下列实施例中未注明具体条件的实验方法,按照常规方法和条件,或按照商品说明书选择。The present invention is further described below by means of examples, but the present invention is not limited to the scope of the described examples. Experimental methods that do not indicate specific conditions in the following examples should be selected according to conventional methods and conditions, or according to product specifications.
另:以下实施例中,若没有特殊说明,所用细胞系均购自ATCC。In addition: in the following examples, unless otherwise stated, all cell lines used were purchased from ATCC.
实施例1抗原特异性αβ-TCR克隆和基因序列鉴定Example 1 Antigen-specific αβ-TCR cloning and gene sequence identification
PRAME 100-108(VLDGLDVLL)抗原特异性CD8 +T细胞TCR基因克隆采用的方法、试剂和耗材,主要参考Curr.Protoc.Immunol.2002,7,1;PLoS One.2011,6,e27930;Onco Immunology.2016,5,e1175795;J Vis Exp.2011,8,3321;J Immunol Methods.2006,310,40;PLoS One.2014,9,e110741及其引用文献。通过免疫磁珠负筛选法从HLA-A*02:01基因型健康志愿者的PBMC中分离得到CD8 +T细胞后,用负载PRAME 100-108肽段的EBV-B细胞(J Vis Exp.2011,8,3321)(EBV病毒:ATCC产品号VR-1492)刺激CD8 +T细胞,然后采用PE标记的HLA-A*02:01/PRAME 100-108四聚体(制备方法见实施例3)及APC标记的抗CD8抗体(Biolegend,产品号301014)对T细胞进行双染色,流式分选得到双阳性T细胞,并将该T细胞扩增培养至一定数量后再次进行分选(图1)。如此经过2轮的刺激培养和分选后,采用有限稀释法对双阳T细胞进行单克隆培养。增殖后的单克隆T细胞通过HLA-A*02:01/PRAME 100-108四聚体和抗CD8抗体双染色进行流式检测并分选得到PRAME 100-108抗原特异性单克隆T细胞。 PRAME 100-108 (VLDGLDVLL) antigen-specific CD8 + T cell TCR gene cloning methods, reagents and consumables, mainly refer to Curr.Protoc.Immunol.2002,7,1; PLoS One.2011,6,e27930; Onco Immunology .2016,5,e1175795; J Vis Exp.2011,8,3321; J Immunol Methods.2006,310,40; PLoS One.2014,9,e110741 and its citations. After CD8 + T cells were isolated from PBMC of healthy volunteers with HLA-A*02:01 genotype by immunomagnetic bead negative screening, EBV-B cells loaded with PRAME 100-108 peptide were used (J Vis Exp. 2011 , 8,3321) (EBV virus: ATCC product number VR-1492) to stimulate CD8 + T cells, and then use PE-labeled HLA-A*02:01/PRAME 100-108 tetramer (see Example 3 for the preparation method) and APC-labeled anti-CD8 antibody (Biolegend, product number 301014) to double-stain T cells, flow sort to obtain double-positive T cells, and expand and culture the T cells to a certain number before sorting again (Figure 1 ). After two rounds of stimulation culture and sorting, the double-positive T cells were cultured monoclonally using the limiting dilution method. The proliferated monoclonal T cells were flow cytometrically detected by double staining with HLA-A*02:01/PRAME 100-108 tetramer and anti-CD8 antibody and sorted to obtain PRAME 100-108 antigen-specific monoclonal T cells.
采用Quick-RNA TM MiniPrep试剂盒(ZYMO research,产品号R1050)对获得单克隆T细胞的总RNA进行提取,并通过SMARTer RACE cDNA Amplification Kit(Clontech,产品号634923)对RNA进行逆转录获得cDNA。然后以cDNA为模板,通过PCR扩增目标基因后连接至pUC19载体,热激法转化E.coli-DH5α,涂板培养过夜后,挑取单克隆菌落进行鉴定和测序,测序获得的基因序列在IMGT数据库进行比对分析,最后获得1个HLA-A*02:01/PRAME 100-108抗原特异性TCR,命名为PVL7 TCR,其TCRα和β链基因型见表1。 The Quick-RNA TM MiniPrep kit (ZYMO research, product number R1050) was used to extract the total RNA from the monoclonal T cells, and the RNA was reverse transcribed using the SMARTer RACE cDNA Amplification Kit (Clontech, product number 634923) to obtain cDNA. Then use cDNA as a template to amplify the target gene through PCR and connect it to the pUC19 vector. Transform it into E.coli-DH5α by heat shock method. After plate culture overnight, single clone colonies are picked for identification and sequencing. The gene sequence obtained by sequencing is in The IMGT database was compared and analyzed, and finally an HLA-A*02:01/PRAME 100-108 antigen-specific TCR was obtained, named PVL7 TCR. Its TCRα and β chain genotypes are shown in Table 1.
表1.TCRα和β链的基因型Table 1. Genotypes of TCRα and β chains
Figure PCTCN2022111175-appb-000001
Figure PCTCN2022111175-appb-000001
PVL7 TCR的α链全长序列(SEQ ID NO:2):The full-length α chain sequence of PVL7 TCR (SEQ ID NO:2):
Figure PCTCN2022111175-appb-000002
Figure PCTCN2022111175-appb-000002
PVL7 TCR的β链全长序列(SEQ ID NO:3):The full-length sequence of the β chain of PVL7 TCR (SEQ ID NO:3):
Figure PCTCN2022111175-appb-000003
Figure PCTCN2022111175-appb-000003
上述序列中:下划线标记序列为信号肽区,黑色加粗标记序列为Vα(α链的可变区)或者Vβ(β链的可变区)、加粗斜体标记序列为Cα(α链的恒定区,SEQ ID NO:11)或者Cβ(β链的恒定区,SEQ ID NO:13)、斜体下划线标记序列为跨膜胞内区,加粗且下划线标记的序列为CDR序列。In the above sequence: the underlined sequence is the signal peptide region, the black bolded sequence is Vα (variable region of α chain) or Vβ (variable region of β chain), and the bolded italicized sequence is Cα (constant region of α chain). Region, SEQ ID NO: 11) or Cβ (constant region of β chain, SEQ ID NO: 13), the sequence marked in italics and underline is the transmembrane intracellular region, and the sequence marked in bold and underline is the CDR sequence.
依据IMGT数据库规则,PVL7 TCR V区的特有关键序列CDR区氨基酸序列见表2:According to the IMGT database rules, the unique key sequence of the PVL7 TCR V region and the amino acid sequence of the CDR region are shown in Table 2:
表2.PVL7 TCR V区α和β链CDR区氨基酸序列Table 2. PVL7 TCR V region α and β chain CDR region amino acid sequences
Figure PCTCN2022111175-appb-000004
Figure PCTCN2022111175-appb-000004
PRAME全长序列(SEQ ID NO:14):PRAME full-length sequence (SEQ ID NO:14):
Figure PCTCN2022111175-appb-000005
Figure PCTCN2022111175-appb-000005
Figure PCTCN2022111175-appb-000006
Figure PCTCN2022111175-appb-000006
上述序列中:下划线标记序列为PRAME 100-108肽段。 In the above sequence: the underlined sequence is the PRAME 100-108 peptide.
实施例2 PVL7 TCR基因的表达和纯化Example 2 Expression and purification of PVL7 TCR gene
PVL7 TCR的α链和β链基因采用Nco I/Not I酶切位点分别连接到pET28a载体,热激法转化E.coli-BL21(DE3),涂板培养过夜后,挑取单克隆菌落至LB培养基中,37℃振荡培养至OD 600=0.6-0.8,加入终浓度为1mM的IPTG诱导目的蛋白表达,37℃继续培养3h后,6000rpm离心10min收集菌体。 The α chain and β chain genes of PVL7 TCR were connected to the pET28a vector using Nco I/Not I enzyme cutting sites respectively, and E.coli-BL21 (DE3) was transformed by heat shock method. After plate culture overnight, single clone colonies were picked to In LB medium, culture with shaking at 37°C until OD 600 = 0.6-0.8. Add IPTG at a final concentration of 1mM to induce the expression of the target protein. After continuing to culture at 37°C for 3 hours, centrifuge at 6000 rpm for 10 minutes to collect the cells.
用裂解液(含0.5%Triton X-100的1×PBS)重悬菌体,进行超声破碎后,12000rpm离心20min。弃上清,用裂解液重悬沉淀直至无肉眼可见的颗粒,12000rpm离心10min,重复以上操作2-3次后,用6M盐酸胍溶液溶解沉淀,12000rpm离心10min后收集上清,上清即为纯化后的包涵体。采用BCA法对包涵体进行定量。Resuspend the cells in lysis buffer (1×PBS containing 0.5% Triton X-100), conduct ultrasonic disruption, and centrifuge at 12,000 rpm for 20 min. Discard the supernatant, resuspend the pellet in lysis buffer until there are no particles visible to the naked eye, centrifuge at 12,000 rpm for 10 min, repeat the above operation 2-3 times, dissolve the pellet with 6M guanidine hydrochloride solution, centrifuge at 12,000 rpm for 10 min, collect the supernatant, and the supernatant is Purified inclusion bodies. Inclusion bodies were quantified using the BCA method.
将20mg PVL7 TCRα链包涵体和15mgβ链包涵体分别稀释于5mL的6M盐酸胍溶液中,然后将TCRα链、TCRβ链依次缓慢加入到预冷的复性缓冲液中(Science 1996,274,209;J.Mol.Biol.1999,285,1831;Protein Eng.2003,16,707),4℃下持续搅拌30min。将溶液加入透析袋中,置于10倍体积预冷的去离子水中,搅拌透析8-12h后,置于预冷的透析液(pH 8.1,20mM Tris-HCl)于4℃透析8-12h,重复2-3次。Dilute 20 mg of PVL7 TCRα chain inclusion body and 15 mg of β chain inclusion body in 5 mL of 6M guanidine hydrochloride solution, and then slowly add the TCRα chain and TCRβ chain to the pre-chilled refolding buffer (Science 1996, 274, 209; J. Mol. Biol. 1999, 285, 1831; Protein Eng. 2003, 16, 707), stirring continuously for 30 minutes at 4°C. Add the solution to the dialysis bag, place it in 10 times the volume of pre-cooled deionized water, stir and dialyze for 8-12 hours, then place it in pre-cooled dialysate (pH 8.1, 20mM Tris-HCl) and dialyze at 4°C for 8-12 hours. Repeat 2-3 times.
将透析袋中的溶液取出,高速离心10min去除沉淀和气泡后,通过HiTrap Q HP(5mL)进行阴离子交换层析,用洗脱液(0-2M NaCl,20mM Tris pH 8.1)线性洗脱(图2A)。分段收集含有目标蛋白组分的洗脱峰,浓缩后取样进行非还原性SDS-PAGE电泳(图2B),结果显示目标蛋白纯度尚需进一步纯化。采用superdex 75 10/300对浓缩后的蛋白样品进行凝胶过滤层析(图3A),取样进行非还原性和还原性SDS-PAGE电泳检测(图3B),结果显示非还原性电泳泳道在45kDa附近有一条主带;还原性电泳泳道有两条带,分别是PVL7 TCR的α链和β链,其纯度满足后续实验需求。Take out the solution in the dialysis bag, centrifuge it at high speed for 10 minutes to remove the precipitate and bubbles, and then perform anion exchange chromatography through HiTrap Q HP (5mL), using eluent (0-2M NaCl, 20mM Tris pH 8.1) to linearly elute (Figure 2A). The elution peaks containing the target protein components were collected in sections, and after concentration, samples were taken for non-reducing SDS-PAGE electrophoresis (Figure 2B). The results showed that the purity of the target protein required further purification. Use superdex 75 10/300 to perform gel filtration chromatography on the concentrated protein sample (Figure 3A), and take samples for non-reducing and reducing SDS-PAGE electrophoresis detection (Figure 3B). The results show that the non-reducing electrophoresis lane is at 45kDa. There is a main band nearby; there are two bands in the reducing electrophoresis lane, namely the α chain and β chain of PVL7 TCR, and their purity meets the needs of subsequent experiments.
实施例3生物素化抗原肽-MHC(pMHC)制备Example 3 Preparation of biotinylated antigen peptide-MHC (pMHC)
pMHC的复性和纯化,按照NIH Tetramer Core Facility的方法进行制备。按照在线protocols所述,将PRAME 100-108多肽溶液、β2M和HLA-A*02:01包涵体溶液依次加入复性缓冲液(0.1M Tris-HCl,0.4M L-arginine,2mM EDTA,0.5mM氧化性谷胱甘肽和5mM 还原性谷胱甘肽,0.2mM PMSF),4℃搅拌过夜,第二天早上和晚上分别再加入同量的HLA-A*02:01包涵体溶液,4℃搅拌1-3天后,在10倍体积透析液(pH 8.1,20mM Tris-HCl)中透析3次。将透析后的蛋白样品用HiTrap Q HP(5mL)进行阴离子交换层析,用洗脱液(0-2M NaCl,20mM Tris pH 8.1)线性洗脱,收集和合并洗脱峰(图4A),将从图4A中的洗脱峰分段(A1-A5)收集的样品用还原性SDS-PAGE电泳分析,清晰可见HLA-A*02:01和β2M两条带(图4B,图中A3-A5对应图4A中在不同洗脱峰节点收集的样品),纯度已满足后续需求,而PRAME 100-108多肽分子量太小,胶图看不到条带。对含有pMHC组分的洗脱峰进行浓缩,经凝胶过滤层析(Superdex 75 10/300)纯化后(图5),用重组酶BirA对pMHC复合体进行生物素化(Protein Expr.Purif.2012,82,162;J.Bacteriol.2012,194,1113.),然后加入链霉亲和素(SA)进行反应验证,反应体系按照NIH Tetramer Core Facility的方法进行制备和Gel Shift纯度鉴定。从Gel Shift电泳图来看(图6),PRAME-pMHC复合体的生物素化制备成功。 The renaturation and purification of pMHC were prepared according to the method of NIH Tetramer Core Facility. According to the online protocols, add the PRAME 100-108 peptide solution, β2M and HLA-A*02:01 inclusion body solution in sequence to the refolding buffer (0.1M Tris-HCl, 0.4M L-arginine, 2mM EDTA, 0.5mM Oxidized glutathione and 5mM reduced glutathione, 0.2mM PMSF), stir overnight at 4°C, add the same amount of HLA-A*02:01 inclusion body solution in the morning and evening the next day, 4°C After stirring for 1-3 days, dialyze three times in 10 times the volume of dialysate (pH 8.1, 20mM Tris-HCl). The dialyzed protein sample was subjected to anion exchange chromatography using HiTrap Q HP (5 mL), linear elution was performed with eluent (0-2M NaCl, 20mM Tris pH 8.1), and the elution peaks were collected and combined (Figure 4A). Samples collected from the elution peak segments (A1-A5) in Figure 4A were analyzed by reducing SDS-PAGE electrophoresis. Two bands, HLA-A*02:01 and β2M, were clearly visible (Figure 4B, A3-A5 in the figure). Corresponding to the samples collected at different elution peak nodes in Figure 4A), the purity has met the subsequent requirements, but the molecular weight of the PRAME 100-108 polypeptide is too small and no bands can be seen in the gel image. The elution peak containing the pMHC component was concentrated and purified by gel filtration chromatography (Superdex 75 10/300) (Figure 5). The pMHC complex was biotinylated with recombinant enzyme BirA (Protein Expr. Purif. 2012, 82, 162; J. Bacteriol. 2012, 194, 1113.), and then added streptavidin (SA) for reaction verification. The reaction system was prepared and Gel Shift purity identified according to the method of NIH Tetramer Core Facility. Judging from the Gel Shift electrophoresis pattern (Figure 6), the biotinylation of the PRAME-pMHC complex was successfully prepared.
实施例4亲和力测试Example 4 Affinity Test
Biacore是一种基于表面等离子共振(Surface Plasmon Resonance,SPR)技术检测亲和力的仪器。在本实验中,使用Biacore T200,首先将生物素化的pMHC偶联在CM5芯片上,然后检测其与不同TCR的结合解离常数,计算出K D值。据此测试PVL7 TCR与pMHC(HLA-A*02:01/VLDGLDVLL)的亲和力,详见表3和图7。 Biacore is an instrument that detects affinity based on Surface Plasmon Resonance (SPR) technology. In this experiment, Biacore T200 was used to first couple biotinylated pMHC to the CM5 chip, and then detect its binding dissociation constants with different TCRs and calculate the K D value. Based on this, the affinity of PVL7 TCR and pMHC (HLA-A*02:01/VLDGLDVLL) was tested. See Table 3 and Figure 7 for details.
表3.PRAME TCR亲和力K DTable 3. PRAME TCR affinity K D values
Figure PCTCN2022111175-appb-000007
Figure PCTCN2022111175-appb-000007
需说明的是:如本领域人员所知,SPR技术是当前测定亲和力最常用、可靠的方法之一,但是涉及到蛋白定量、芯片新旧程度、仪器状态等,不同批次间的实验,会有一定的误差,误差值甚至可达3~5倍;而本发明为使用了同一蛋白定量、同一芯片以及同一仪器所进行的同批次实验,因此各数据之间可用于进行亲和力大小的比较,但具体数值并不构成对本发明保护范围的限制。It should be noted that: as those in the field know, SPR technology is one of the most commonly used and reliable methods for determining affinity. However, when it comes to protein quantification, chip condition, instrument status, etc., there will be differences in experiments between different batches. There is a certain error, and the error value can even reach 3 to 5 times; and the present invention uses the same batch of experiments using the same protein quantification, the same chip and the same instrument, so the data can be used to compare the affinity. However, specific numerical values do not constitute a limitation on the scope of the present invention.
实施例5 TCR慢病毒制备和转导CD8 +T细胞 Example 5 TCR lentivirus preparation and transduction of CD8 + T cells
1)TCR慢病毒包装1)TCR lentivirus packaging
采用第三代慢病毒包装系统(Invitrogen,pLenti6/V5Directional TOPO TM Cloning Kit,产品号K495510)包装含有编码目的TCR基因的慢病毒。参照该试剂盒说明书提供的方 法,将包装质粒pMDLg/pRRE(addgene,产品号k12251)、pRSV-REV(addgene,产品号12253)、pMD2.G(addgene,产品号12259)分别与含目的基因的穿梭质粒如pLenti-PVL7、pLenti-PVLcon(该TCR基因序列来源于专利号US2019169261A1中的TCR T4.8-1-29)、pLenti-GFP(阴性对照)等按质量比4:2:1:1进行混匀,通过转染试剂PEI-MAX(Polyscience,产品号23966-1)瞬时转染处于对数生长期的293T细胞。转染48-50h后收集含有慢病毒的培养基上清液,经离心和0.45μm滤器去除细胞碎片后,用配有Ultracel-50滤膜的Amicon Ultra-15离心过滤器(Merck Millipore,产品号UFC905096)将上清液进行浓缩。对浓缩后的样品进行慢病毒滴度测定,步骤参照p24 ELISA(Clontech,产品号632200)试剂盒说明书。 The third generation lentivirus packaging system (Invitrogen, pLenti6/V5Directional TOPO TM Cloning Kit, product number K495510) is used to package the lentivirus containing the gene encoding the target TCR. Referring to the method provided in the kit instructions, combine the packaging plasmids pMDLg/pRRE (addgene, product number k12251), pRSV-REV (addgene, product number 12253), and pMD2.G (addgene, product number 12259) with the target gene. Shuttle plasmids such as pLenti-PVL7, pLenti-PVLcon (the TCR gene sequence is derived from TCR T4.8-1-29 in patent number US2019169261A1), pLenti-GFP (negative control), etc. are based on the mass ratio of 4:2:1:1 Mix well and use transfection reagent PEI-MAX (Polyscience, product number 23966-1) to transiently transfect 293T cells in the logarithmic growth phase. 48-50 h after transfection, the medium supernatant containing lentivirus was collected. After centrifugation and a 0.45 μm filter to remove cell debris, it was filtered with an Amicon Ultra-15 centrifugal filter equipped with Ultracel-50 filter membrane (Merck Millipore, Product No. UFC905096) and the supernatant was concentrated. The lentivirus titer was measured on the concentrated samples. The steps were described in the p24 ELISA (Clontech, Product No. 632200) kit instructions.
2)TCR慢病毒转导CD8 +T细胞 2) TCR lentivirus transduces CD8 + T cells
从健康志愿者的PBMC中分离得到CD8 +T细胞,用含有10%FBS和100IU/mL IL-2的RPMI 1640完全培养基接种于48孔板中,每孔1×10 6个细胞,并加入抗CD3/CD28抗体偶联磁珠用于刺激活化CD8 +T细胞,置于细胞培养箱培养过夜。刺激过夜后,按MOI=5的比例加入PVL7、PVLcon或GFP慢病毒,32℃,900g离心感染1h。感染完毕后去除慢病毒感染液,继续培养细胞3天,用磁铁去除抗CD3/CD28抗体偶联磁珠。此后每两天细胞计数一次,更换或加入新鲜完全培养基,将细胞密度维持在1-2×10 6cells/mL。在细胞培养第9天,通过HLA-A*02:01/PRAME 100-108四聚体染色,对T细胞进行流式检测和阳性率分析。结果如图8所示,PVL7 TCR-T细胞的阳性率为44.8%,PVLcon TCR-T细胞阳性率为47.1%,GFP TCR-T细胞阳性率为79.3%。 CD8 + T cells were isolated from PBMC of healthy volunteers, seeded in 48-well plates with RPMI 1640 complete medium containing 10% FBS and 100 IU/mL IL-2, with 1 × 10 cells per well, and added Anti-CD3/CD28 antibody-coupled magnetic beads were used to stimulate activated CD8 + T cells and were cultured in a cell culture incubator overnight. After stimulation overnight, add PVL7, PVLcon or GFP lentivirus at a ratio of MOI=5, and centrifuge the infection at 900g for 1 hour at 32°C. After the infection is completed, remove the lentiviral infection fluid, continue to culture the cells for 3 days, and use a magnet to remove the anti-CD3/CD28 antibody-coupled magnetic beads. Thereafter, the cells were counted every two days, and fresh complete medium was replaced or added to maintain the cell density at 1-2×10 6 cells/mL. On the 9th day of cell culture, flow cytometry and positive rate analysis of T cells were performed through HLA-A*02:01/PRAME 100-108 tetramer staining. The results are shown in Figure 8. The positive rate of PVL7 TCR-T cells was 44.8%, the positive rate of PVLcon TCR-T cells was 47.1%, and the positive rate of GFP TCR-T cells was 79.3%.
实施例6 PVL7 TCR体外功能特异性分析—ELISPOT法检测负载多肽T 2细胞的INF-γ释放 Example 6 PVL7 TCR functional specificity analysis in vitro—ELISPOT method to detect INF-γ release from polypeptide-loaded T2 cells
本实施例通过ELISPOT试验分析PVL7 TCR在负载特异性或非特异性多肽的T 2细胞刺激下INF-γ因子的释放情况。本实施例的效应细胞是实施例5中的经PVL7、PVLcon和GFP慢病毒转导的CD8 +T细胞。本实施例的靶细胞是负载不同浓度多肽的T 2细胞,将T 2细胞分别与7个梯度浓度(10 -11、10 -10、10 -9、10 -8、10 -7、10 -6、10 -5M)PRAME 100-108多肽,或10 -6M的NY-ESO-1 157-165多肽或HPV16-E6 29-38多肽混匀,置于37℃培养箱孵育4h后,离心,1×PBS洗涤1次,用含10%FBS的RPMI 1640培养基重悬细胞,用于下一步铺板。根据Human INF-γELISPOT Set试剂盒说明书(BD biosciences,产品号551849),执行后续的实验操作。将4×10 3个阳性效应细胞/孔和4×10 4个靶细胞/孔加入ELISPOT孔板,每孔培养体系200μL,将孔板置于细胞培养箱孵育过夜。孵育结束后按照试剂盒说明书进行洗涤,然后加入BCIP/NBT溶液显影5-15min后,用去离子水洗涤 孔板,最终倒扣孔板,使板在室温下自然干燥。用酶联免疫斑点分析仪(
Figure PCTCN2022111175-appb-000008
6000Pro-Fβ,Bio-Sys)对孔板进行分析。
This example uses an ELISPOT test to analyze the release of INF-γ factors from PVL7 TCR under stimulation of T 2 cells loaded with specific or non-specific polypeptides. The effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5. The target cells in this example are T 2 cells loaded with polypeptides of different concentrations. The T 2 cells were exposed to 7 gradient concentrations (10 -11 , 10 -10 , 10 -9 , 10 -8 , 10 -7 , 10 -6 , 10 -5 M) PRAME 100-108 polypeptide, or 10 -6 M NY-ESO-1 157-165 polypeptide or HPV16-E6 29-38 polypeptide, mix well, place it in a 37°C incubator for 4 hours, and then centrifuge. Wash once with 1×PBS and resuspend the cells in RPMI 1640 medium containing 10% FBS for the next step of plating. Follow-up experimental operations were performed according to the instructions of the Human INF-γELISPOT Set kit (BD biosciences, product number 551849). Add 4×10 3 positive effector cells/well and 4×10 4 target cells/well to the ELISPOT well plate, 200 μL of culture system per well, and place the well plate in a cell culture incubator to incubate overnight. After incubation, wash according to the kit instructions, then add BCIP/NBT solution for development for 5-15 minutes, wash the well plate with deionized water, and finally invert the well plate to allow the plate to dry naturally at room temperature. Enzyme-linked immunospot analyzer (
Figure PCTCN2022111175-appb-000008
6000Pro-Fβ, Bio-Sys) to analyze well plates.
结果如图9A所示,负载PRAME 100-108多肽的T 2细胞强烈刺激PVL7 TCR-T细胞释放INF-γ因子,并且呈多肽浓度依赖性,其趋势与阳性对照PVLcon一致。当负载多肽浓度大于10 -7M,PVL7和PVLcon TCR-T细胞释放INF-γ均达到峰值,且两者之间无显著差异。特异性识别NY-ESO-1 157-165的1G4TCR-T细胞(制备方法参考专利CN112442118A)和特异性识别HPV16-E6 29-38的E6con TCR-T细胞(制备方法参考专利CN113754756A)具有显著活性(图9B&图9C),而PVL7和PVLcon TCR-T细胞对负载非特异性NY-ESO-1 157-165或HPV16-E6 29-38多肽的T 2细胞均无显著活性。负载PRAME/NY-ESO-1/HPV16-E6肽段的T 2细胞都无法刺激GFP TCR-T细胞释放INF-γ因子。综上所述,PVL7 TCR功能与阳性对照PVLcon接近,且对HLA-A*02:01/PRAME 100-108的识别具有特异性。 The results are shown in Figure 9A. T 2 cells loaded with PRAME 100-108 polypeptide strongly stimulated PVL7 TCR-T cells to release INF-γ factors in a peptide concentration-dependent manner. The trend was consistent with the positive control PVLcon. When the concentration of the loaded peptide was greater than 10 -7 M, the release of INF-γ from both PVL7 and PVLcon TCR-T cells reached the peak, and there was no significant difference between the two. 1G4TCR-T cells that specifically recognize NY-ESO-1 157-165 (refer to patent CN112442118A for the preparation method) and E6con TCR-T cells that specifically recognize HPV16-E6 29-38 (refer to patent CN113754756A for the preparation method) have significant activity ( Figure 9B & Figure 9C), while neither PVL7 nor PVLcon TCR-T cells had significant activity against T 2 cells loaded with non-specific NY-ESO-1 157-165 or HPV16-E6 29-38 polypeptides. T 2 cells loaded with PRAME/NY-ESO-1/HPV16-E6 peptide fragments were unable to stimulate GFP TCR-T cells to release INF-γ factors. In summary, the function of PVL7 TCR is close to that of the positive control PVLcon, and it is specific for the recognition of HLA-A*02:01/PRAME 100-108 .
实施例7构建PRAME转基因K562单克隆细胞Example 7 Construction of PRAME transgenic K562 monoclonal cells
为了构建HLA-A*02:01 +/PRAME +双阳靶细胞以用于PVL7 TCR功能验证,将HLA-A*02:01基因通过实施例5的方法连接到相应的穿梭质粒,并进行慢病毒包装,然后转导到K562肿瘤细胞(HLA-A*02:01 -/PRAME +),初步得到染色体整合有HLA-A*02:01基因的K562多克隆细胞。为了得到能稳定表达HLA-A*02:01基因的K562单克隆细胞,通过有限稀释法对K562-A0201多克隆细胞在96孔板中进行分离培养,每孔含有0.5–1个候选细胞。待候选细胞扩增完毕,采用鼠抗人HLA-A2流式抗体(BD Pharmingen,产品号558570)检测K562-A0201单克隆细胞膜表面HLA-A*02:01表达情况。如图10所示,编号为3G5的K562-A0201单克隆细胞HLA-A*02:01表达阳性率为99.7%,该细胞将用于PVL7 TCR的体外功能验证和动物实验。 In order to construct HLA-A*02:01 + /PRAME + double-positive target cells for PVL7 TCR functional verification, the HLA-A*02:01 gene was connected to the corresponding shuttle plasmid through the method of Example 5, and lentiviral Packed and then transduced into K562 tumor cells (HLA-A*02:01 - /PRAME + ), K562 polyclonal cells with chromosomally integrated HLA-A*02:01 gene were initially obtained. In order to obtain K562 monoclonal cells that can stably express the HLA-A*02:01 gene, K562-A0201 polyclonal cells were isolated and cultured in a 96-well plate using the limiting dilution method, with each well containing 0.5–1 candidate cells. After the candidate cells have been amplified, use mouse anti-human HLA-A2 flow cytometry antibody (BD Pharmingen, product number 558570) to detect the expression of HLA-A*02:01 on the K562-A0201 monoclonal cell membrane surface. As shown in Figure 10, the HLA-A*02:01 expression positivity rate of K562-A0201 monoclonal cells numbered 3G5 is 99.7%. This cell will be used for in vitro functional verification and animal experiments of PVL7 TCR.
HLA-A*02:01基因全长序列(SEQ ID NO:15):HLA-A*02:01 gene full-length sequence (SEQ ID NO:15):
Figure PCTCN2022111175-appb-000009
Figure PCTCN2022111175-appb-000009
Figure PCTCN2022111175-appb-000010
Figure PCTCN2022111175-appb-000010
实施例8 PVL7 TCR体外功能验证—ELISPOT法检测肿瘤细胞系的INF-γ释放Example 8 PVL7 TCR in vitro functional verification—ELISPOT method to detect INF-γ release from tumor cell lines
本实施例通过ELISPOT试验分析PVL7 TCR在不同肿瘤细胞系刺激下INF-γ因子的释放情况。本实施例的效应细胞是实施例5中的经PVL7、PVLcon和GFP慢病毒转导的CD8 +T细胞。本实施例的肿瘤靶细胞分别是K562、K562-A0201-3G5、Hela(北京协和细胞资源中心)、SiHa(北京协和细胞资源中心)、Raji(北京协和细胞资源中心)和HT-1080(北京协和细胞资源中心)细胞。按实施例6所述,依次将4×10 3个阳性效应细胞/孔和4×10 4个肿瘤靶细胞/孔加入ELISPOT孔板,每孔培养体系200μL,将孔板置于细胞培养箱孵育过夜。孵育结束后,参照实施例6的方法对ELISPOT孔板进行洗涤和显影,最终用酶联免疫斑点分析仪对孔板进行分析。 This example uses ELISPOT assay to analyze the release of INF-γ factor by PVL7 TCR under stimulation of different tumor cell lines. The effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5. The tumor target cells in this example are K562, K562-A0201-3G5, Hela (Peking Union Cell Resource Center), SiHa (Peking Union Cell Resource Center), Raji (Peking Union Cell Resource Center) and HT-1080 (Peking Union Cell Resource Center). Cell Resource Center) cells. As described in Example 6, 4×10 3 positive effector cells/well and 4×10 4 tumor target cells/well were added to the ELISPOT well plate in sequence, with 200 μL of culture system per well, and the well plate was placed in a cell culture incubator for incubation. overnight. After the incubation, the ELISPOT well plate was washed and developed according to the method of Example 6, and finally the well plate was analyzed with an enzyme-linked immunospot analyzer.
结果如图11所示,PVL7和PVLcon TCR-T细胞对双阳肿瘤靶细胞K562-A0201-3G5展现出强烈刺激活性,PVL7释放INF-γ因子的活性略高于PVLcon,但两者之间并无显著差异。其它肿瘤细胞均无法刺激PVL7与PVLcon TCR-T细胞释放INF-γ。GFP TCR-T细胞对所有肿瘤靶细胞均无明显活性。The results are shown in Figure 11. PVL7 and PVLcon TCR-T cells showed strong stimulatory activity on the double-positive tumor target cell K562-A0201-3G5. The activity of PVL7 in releasing INF-γ factor was slightly higher than that of PVLcon, but there was no difference between the two. significant difference. Other tumor cells were unable to stimulate PVL7 and PVLcon TCR-T cells to release INF-γ. GFP TCR-T cells have no obvious activity against all tumor target cells.
实施例9 PVL7 TCR体外功能验证—肿瘤细胞系LDH特异性杀伤Example 9 In vitro functional verification of PVL7 TCR—specific killing of tumor cell lines by LDH
采用定量测定靶细胞裂解后释放的LDH来评估效应细胞杀伤靶细胞的功能,具体实验方案参考文献Eur.J Immunol.1993,23,3217。本实施例的效应细胞是实施例5中的经PVL7、PVLcon和GFP慢病毒转导的CD8 +T细胞。本实施例的肿瘤靶细胞是K562和K562-A0201-3G5细胞。依次将3×10 4个阳性效应细胞/孔和1×10 4个肿瘤靶细胞/孔加入96孔圆底板,每孔培养体系200μL,细胞在铺板时均置换成仅含5%FBS的RPMI 1640培养基,将孔板置于细胞培养箱中培养24h。根据CytoTox
Figure PCTCN2022111175-appb-000011
Non-Radioactive Cytotoxicity Assay试剂盒说明书(Promega,产品号G1780),在培养基空白孔与肿瘤靶细胞最大自释放孔中加入裂解液,置于细胞培养箱孵育45min后,每孔取50μL上清与50μL LDH检测液混匀,在室温避光孵育30min。孵育结束后,加入终止液,并于490nm波长下读板。按照计算公式对数据进行处理分析:细胞毒性百分比%,即LDH释放百分比%=(实验组释放量–肿瘤细胞自释放量–TCR-T细胞自释放量)/(肿瘤细胞最大释放量-肿瘤细胞自释放量)*100%。计算时,各组LDH释放量数值均减去培养基本底光吸收值。
Quantitative measurement of LDH released after target cell lysis is used to evaluate the function of effector cells in killing target cells. For specific experimental protocols, refer to Eur. J Immunol. 1993, 23, 3217. The effector cells in this example are CD8 + T cells transduced by PVL7, PVLcon and GFP lentivirus in Example 5. The tumor target cells in this example are K562 and K562-A0201-3G5 cells. Sequentially add 3×10 4 positive effector cells/well and 1×10 4 tumor target cells/well to a 96-well round-bottom plate, with 200 μL of culture system in each well. The cells were replaced with RPMI 1640 containing only 5% FBS when plating. culture medium, and place the well plate in a cell culture incubator for 24 h. According to CytoTox
Figure PCTCN2022111175-appb-000011
Non-Radioactive Cytotoxicity Assay kit instructions (Promega, product number G1780), add lysis solution to the blank well of the culture medium and the maximum self-release hole of the tumor target cells, place it in a cell culture incubator and incubate for 45 minutes, take 50 μL of supernatant from each well and Mix 50 μL LDH detection solution and incubate at room temperature in the dark for 30 minutes. After the incubation, stop solution was added and the plate was read at 490 nm. Process and analyze the data according to the calculation formula: Cytotoxicity percentage %, that is, LDH release percentage % = (release amount of experimental group – self-release amount of tumor cells – self-release amount of TCR-T cells) / (maximum release amount of tumor cells – tumor cells Self-release amount)*100%. When calculating, the LDH release value of each group was subtracted from the basic light absorption value of the culture.
结果如图12所示,PVL7和PVLcon TCR-T细胞对双阳肿瘤靶细胞K562-A0201-3G5展现出明显的杀伤作用,两者细胞毒性百分比接近,分别是65.16±17.39%和66.22±9.67%。PVL7和PVLcon TCR-T细胞对K562无明显杀伤作用,与阴性对照GFP TCR-T细胞接近。The results are shown in Figure 12. PVL7 and PVLcon TCR-T cells showed obvious killing effects on the double-positive tumor target cell K562-A0201-3G5. The cytotoxicity percentages of the two were close, which were 65.16±17.39% and 66.22±9.67% respectively. PVL7 and PVLcon TCR-T cells had no obvious killing effect on K562 and were close to the negative control GFP TCR-T cells.
实施例10 PVL7 TCR体外功能验证—健康人PBMC特异性INF-γ释放Example 10 In vitro functional verification of PVL7 TCR—specific INF-γ release from healthy human PBMC
为排查PVL7 TCR的安全性,采用实施例6的ELISPOT法,对28例健康人的PBMC进行安全性排查。28例健康人PBMC包含7例HLA-A*02:01分型,21例非HLA-A*02:01分型(图13A)。结果如图13B所示,INF-γ释放结果显示PVL7和PVLcon TCR-T细胞与健康人的PBMC无明显反应。In order to investigate the safety of PVL7 TCR, the ELISPOT method of Example 6 was used to conduct safety investigation on PBMC of 28 healthy people. The 28 cases of healthy human PBMC included 7 cases with HLA-A*02:01 typing and 21 cases with non-HLA-A*02:01 typing (Figure 13A). The results are shown in Figure 13B. The INF-γ release results showed that PVL7 and PVLcon TCR-T cells had no obvious reaction with PBMC of healthy people.
实施例11 PVL7 TCR动物实验验证—PRAME转基因K562细胞异源移植Example 11 Animal Experimental Verification of PVL7 TCR—Xenogeneic Transplantation of PRAME Transgenic K562 Cells
本实施例的实验动物种系是B-NDG小鼠(百奥赛图江苏基因生物技术有限公司,SPF级),雌性,4~6周龄。试验期间,实验动物安置在SPF级动物中心,所有技术指标均符合GB14925-2010屏障环境技术要求。本研究中的动物将食用质量符合国家标准并在有效期内的饲料,其饮用水经动物饮用纯水系统过滤除菌处理或高温高压灭菌处理,由动物饮水瓶自由摄取。实验动物均适应性饲养1周后再进行后续实验。The experimental animal strain in this example is B-NDG mice (Biocytogen Jiangsu Gene Biotechnology Co., Ltd., SPF grade), female, 4 to 6 weeks old. During the test, the experimental animals were housed in an SPF-level animal center, and all technical indicators complied with GB14925-2010 barrier environment technical requirements. The animals in this study will eat feed whose quality meets national standards and is within the validity period. Their drinking water will be filtered and sterilized by the animal drinking pure water system or sterilized by high temperature and high pressure, and will be freely ingested from animal drinking bottles. All experimental animals were adaptively raised for 1 week before subsequent experiments were conducted.
选择适应性观察合格的B-NDG小鼠皮下接种K562-A0201-3G5肿瘤细胞,调整细胞密度为2×10 7个/mL,每只接种0.2mL。接种后每天进行观察,在平均瘤体积为100mm 3左右时分为3个组,即Model Control组、PVL7 TCR-T组和GFP TCR-T组,每组7只动物。PVL7 TCR-T组按照剂量4×10 8个阳性细胞/kg给药,GFP TCR-T组给予相同剂量的T细胞,模型对照组动物给予等体积的溶媒。各组小鼠给药均为尾静脉注射。各组给药后腹腔注射IL-2,5万IU/只,连续给药5天。分组当天测量瘤径,之后每3天用游标卡尺测量肿瘤的长径(a)及短径(b),按公式1/2×a×b 2计算肿瘤体积(Tumor Volume),绘制肿瘤生长曲线。给药18天后安乐死动物,取瘤体进行拍照。 Select B-NDG mice that have passed the adaptability observation and inoculate K562-A0201-3G5 tumor cells subcutaneously, adjust the cell density to 2×10 7 cells/mL, and inoculate 0.2 mL into each mouse. Observations were conducted every day after inoculation. When the average tumor volume was about 100 mm, they were divided into three groups, namely Model Control group, PVL7 TCR-T group and GFP TCR-T group, with 7 animals in each group. The PVL7 TCR-T group was given a dose of 4×10 8 positive cells/kg, the GFP TCR-T group was given the same dose of T cells, and the animals in the model control group were given an equal volume of vehicle. The mice in each group were given tail vein injection. After administration, each group was intraperitoneally injected with IL-2, 50,000 IU/animal, for 5 consecutive days. The tumor diameter was measured on the day of grouping, and the long diameter (a) and short diameter (b) of the tumor were measured with a vernier caliper every 3 days. The tumor volume was calculated according to the formula 1/2 × a × b 2 , and the tumor growth curve was drawn. The animals were euthanized 18 days after administration, and the tumors were taken for photography.
各组小鼠的肿瘤生长曲线和瘤体详见图14和图15,PVL7 TCR-T细胞能有效杀伤肿瘤细胞K562-A0201-3G5、抑制肿瘤的生长。GFP TCR-T组的肿瘤生长曲线和Model Control组相比无明显变化。The tumor growth curves and tumor bodies of mice in each group are detailed in Figures 14 and 15. PVL7 TCR-T cells can effectively kill tumor cells K562-A0201-3G5 and inhibit tumor growth. The tumor growth curve of the GFP TCR-T group did not change significantly compared with the Model Control group.
虽然以上描述了本发明的具体实施方式,但是本领域的技术人员应当理解,这些仅是举例说明,在不背离本发明的原理和实质的前提下,可以对这些实施方式做出多种变更或修改。因此,本发明的保护范围由所附权利要求书限定。Although specific embodiments of the present invention have been described above, those skilled in the art should understand that these are only examples, and various changes or changes can be made to these embodiments without departing from the principles and essence of the present invention. Revise. Accordingly, the scope of the present invention is defined by the appended claims.

Claims (13)

  1. 一种TCR,所述TCR包含α链和/或β链,所述α链包含α链可变区,所述β链包含β链可变区,其特征在于,所述α链可变区的CDR3包含如SEQ ID NO:6所示的氨基酸序列,和/或所述β链可变区的CDR3包含如SEQ ID NO:9所示的氨基酸序列。A TCR, the TCR includes an α chain and/or a β chain, the α chain includes an α chain variable region, and the β chain includes a β chain variable region, characterized in that, the α chain variable region CDR3 includes the amino acid sequence shown in SEQ ID NO:6, and/or the CDR3 of the β chain variable region includes the amino acid sequence shown in SEQ ID NO:9.
  2. 如权利要求1所述的TCR,其特征在于,所述α链可变区的CDR1和CDR2分别包含如SEQ ID NO:4和SEQ ID NO:5所示的氨基酸序列,和/或所述β链可变区的CDR1和CDR2分别包含如SEQ ID NO:7和SEQ ID NO:8所示的氨基酸序列。The TCR of claim 1, wherein CDR1 and CDR2 of the α chain variable region respectively comprise the amino acid sequences shown in SEQ ID NO:4 and SEQ ID NO:5, and/or the β CDR1 and CDR2 of the chain variable region include the amino acid sequences shown in SEQ ID NO:7 and SEQ ID NO:8 respectively.
  3. 如权利要求2所述的TCR,其特征在于,所述α链可变区的CDR1、CDR2和CDR3分别为如SEQ ID NO:4、SEQ ID NO:5和SEQ ID NO:6所示的氨基酸序列,且所述β链可变区的CDR1、CDR2和CDR3分别为如SEQ ID NO:7、SEQ ID NO:8和SEQ ID NO:9所示的氨基酸序列。The TCR of claim 2, wherein CDR1, CDR2 and CDR3 of the alpha chain variable region are the amino acids shown in SEQ ID NO: 4, SEQ ID NO: 5 and SEQ ID NO: 6 respectively. sequence, and the CDR1, CDR2 and CDR3 of the β chain variable region are the amino acid sequences shown in SEQ ID NO:7, SEQ ID NO:8 and SEQ ID NO:9 respectively.
  4. 如权利要求1所述的TCR,其特征在于,所述TCR的α链和/或β链还包含框架区;The TCR of claim 1, wherein the α chain and/or β chain of the TCR further includes a framework region;
    所述α链的框架区来源于TRAV和TRAJ,其中所述TRAV优选种系TRAV20,所述TRAJ优选种系TRAJ36;和/或,The framework region of the alpha chain is derived from TRAV and TRAJ, wherein the TRAV is preferably germline TRAV20, and the TRAJ is preferably germline TRAJ36; and/or,
    所述β链的框架区来源于TRBV、TRBD和TRBJ,所述TRBV优选种系TRBV7-8,所述TRBD优选种系TRBD1,所述TRBJ优选种系TRBJ2-3。The framework region of the β chain is derived from TRBV, TRBD and TRBJ. The TRBV is preferably the germline TRBV7-8, the TRBD is preferably the germline TRBD1, and the TRBJ is preferably the germline TRBJ2-3.
  5. 如权利要求4所述的TCR,其特征在于,所述TCR的α链可变区含有如SEQ ID NO:10或其衍生序列所示的氨基酸序列,和/或,所述TCR的β链可变区含有如SEQ ID NO:12或其衍生序列所示的氨基酸序列;The TCR of claim 4, wherein the alpha chain variable region of the TCR contains the amino acid sequence shown in SEQ ID NO: 10 or its derivative sequence, and/or the beta chain of the TCR can The variable region contains the amino acid sequence shown in SEQ ID NO: 12 or its derivative sequence;
    优选地,所述α链可变区的氨基酸序列如SEQ ID NO:10或其衍生序列所示,和/或所述β链可变区的氨基酸序列如SEQ ID NO:12或其衍生序列所示;Preferably, the amino acid sequence of the α chain variable region is as shown in SEQ ID NO: 10 or its derivative sequence, and/or the amino acid sequence of the β chain variable region is as shown in SEQ ID NO: 12 or its derivative sequence. Show;
    所述衍生序列与原序列的同一性为89%、90%、91%、92%、93%、94%、95%、96%、97%、98%或者99%以上,且保留与原序列相同的功能。The identity of the derived sequence to the original sequence is 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or more, and remains identical to the original sequence Same functionality.
  6. 如权利要求1~5任一项所述的TCR,其特征在于,所述TCR的α链和/或β链还包括恒定区,所述α链和/或所述β链的恒定区优选来源于人种系;The TCR according to any one of claims 1 to 5, wherein the α chain and/or β chain of the TCR further includes a constant region, and the constant region of the α chain and/or the β chain is preferably derived from in the human germline;
    较佳地,所述α链的恒定区来源于TRAC,和/或,所述β链的恒定区来源于TRBC,所述TRBC优选种系TRBC2;Preferably, the constant region of the α chain is derived from TRAC, and/or, the constant region of the β chain is derived from TRBC, and the TRBC is preferably germline TRBC2;
    更佳地,来源于人种系的α链的恒定区的氨基酸序列如SEQ ID NO:11所示,和/或,来源于人种系的β链的恒定区的氨基酸序列如SEQ ID NO:13所示。More preferably, the amino acid sequence of the constant region of the α chain derived from the human germline is as shown in SEQ ID NO: 11, and/or the amino acid sequence of the constant region of the β chain derived from the human germline is as shown in SEQ ID NO: Shown in 13.
  7. 如权利要求6所述的TCR,其特征在于,所述TCR的α链和/或β链还包括膜外区和跨膜区;The TCR according to claim 6, wherein the α chain and/or β chain of the TCR further includes an extramembrane region and a transmembrane region;
    较佳地,所述TCR的α链和/或β链还包括胞内序列;Preferably, the α chain and/or β chain of the TCR also includes intracellular sequences;
    更佳地,包含信号肽的所述TCR的α链的氨基酸序列如SEQ ID NO:2所示,其中信号肽位于SEQ ID NO:2的第1~21位;和/或,包含信号肽的所述TCR的β链的氨基酸序列如SEQ ID NO:3所示,其中信号肽位于SEQ ID NO:3的第1~19位。More preferably, the amino acid sequence of the α chain of the TCR including the signal peptide is as shown in SEQ ID NO: 2, wherein the signal peptide is located at positions 1 to 21 of SEQ ID NO: 2; and/or, the amino acid sequence including the signal peptide The amino acid sequence of the β chain of the TCR is shown in SEQ ID NO: 3, in which the signal peptide is located at positions 1 to 19 of SEQ ID NO: 3.
  8. 一种分离的核酸,其特征在于,其编码如权利要求1~7任一项所述的TCR。An isolated nucleic acid, characterized in that it encodes the TCR according to any one of claims 1 to 7.
  9. 一种包含如权利要求8所述的核酸的载体,所述的载体优选慢病毒载体;所述的核酸在单个开放阅读框中,或者在两个不同的开放阅读框中分别编码TCRα链和TCRβ链。A vector comprising the nucleic acid as claimed in claim 8, the vector is preferably a lentiviral vector; the nucleic acid encodes TCRα chain and TCRβ respectively in a single open reading frame, or in two different open reading frames. chain.
  10. 一种含有如权利要求8所述的核酸或者如权利要求9所述的载体的细胞;较佳地,所述的细胞为T细胞或者干细胞,所述的T细胞优选CD8 +T细胞。 A cell containing the nucleic acid of claim 8 or the vector of claim 9; preferably, the cells are T cells or stem cells, and the T cells are preferably CD8 + T cells.
  11. 一种提呈如权利要求1~7任一项所述的TCR的分离的或非天然存在的细胞,所述的细胞优选T细胞。An isolated or non-naturally occurring cell presenting the TCR according to any one of claims 1 to 7, preferably a T cell.
  12. 一种药物组合物,其特征在于,其含有如权利要求1~7任一项所述的TCR或者如权利要求10或11所述的细胞;较佳地,所述的药物组合物还包含药物上可接受的载体。A pharmaceutical composition, characterized in that it contains the TCR according to any one of claims 1 to 7 or the cell according to claims 10 or 11; preferably, the pharmaceutical composition also contains a drug acceptable carrier.
  13. 一种如权利要求1~7任一项所述TCR、如权利要求10或11所述的细胞或者如权利要求12所述的药物组合物在制备防治PRAME表达相关的肿瘤的药物中的应用;The application of a TCR according to any one of claims 1 to 7, a cell according to claims 10 or 11, or a pharmaceutical composition according to claim 12 in the preparation of drugs for preventing and treating tumors related to PRAME expression;
    较佳地,所述的肿瘤包括黑色素瘤、急慢性白血病、淋巴瘤、非小细胞肺癌、宫颈癌、肉瘤、头颈癌、肾细胞癌和乳腺癌。Preferably, the tumors include melanoma, acute and chronic leukemia, lymphoma, non-small cell lung cancer, cervical cancer, sarcoma, head and neck cancer, renal cell carcinoma and breast cancer.
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CN106519019A (en) * 2015-11-06 2017-03-22 广州市香雪制药股份有限公司 TCR for identifying PRAME antigen
CN106831978A (en) * 2015-12-04 2017-06-13 中国科学院广州生物医药与健康研究院 Recognize the φt cell receptor of DAGE
CN110494160A (en) * 2017-03-23 2019-11-22 伊玛提克斯生物技术有限公司 T cell receptor and its immunization therapy for PRAME positive cancer
CN110272482A (en) * 2018-03-14 2019-09-24 中国科学院广州生物医药与健康研究院 Identify the T cell receptor of PRAME antigen small peptide

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