WO2022095781A1 - Molecular marker for predicting and monitoring disease course of novel coronavirus pneumonia and use thereof - Google Patents

Molecular marker for predicting and monitoring disease course of novel coronavirus pneumonia and use thereof Download PDF

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WO2022095781A1
WO2022095781A1 PCT/CN2021/127006 CN2021127006W WO2022095781A1 WO 2022095781 A1 WO2022095781 A1 WO 2022095781A1 CN 2021127006 W CN2021127006 W CN 2021127006W WO 2022095781 A1 WO2022095781 A1 WO 2022095781A1
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hyaluronic acid
plasma
patients
marker
novel coronavirus
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PCT/CN2021/127006
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French (fr)
Chinese (zh)
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于文强
徐鹏
杨帅
茹道平
徐建青
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上海市公共卫生临床中心
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/5308Immunoassay; Biospecific binding assay; Materials therefor for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/58Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
    • G01N33/581Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with enzyme label (including co-enzymes, co-factors, enzyme inhibitors or substrates)
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6863Cytokines, i.e. immune system proteins modifying a biological response such as cell growth proliferation or differentiation, e.g. TNF, CNF, GM-CSF, lymphotoxin, MIF or their receptors
    • G01N33/6869Interleukin
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6893Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701Details
    • G01N2333/4737C-reactive protein
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/52Assays involving cytokines
    • G01N2333/54Interleukins [IL]
    • G01N2333/5412IL-6
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/52Assays involving cytokines
    • G01N2333/54Interleukins [IL]
    • G01N2333/5421IL-8
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/745Assays involving non-enzymic blood coagulation factors
    • G01N2333/75Fibrin; Fibrinogen
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2400/00Assays, e.g. immunoassays or enzyme assays, involving carbohydrates
    • G01N2400/10Polysaccharides, i.e. having more than five saccharide radicals attached to each other by glycosidic linkages; Derivatives thereof, e.g. ethers, esters
    • G01N2400/38Heteroglycans, i.e. polysaccharides having more than one sugar residue in the main chain in either alternating or less regular sequence, e.g. gluco- or galactomannans, e.g. Konjac gum, Locust bean gum, Guar gum
    • G01N2400/40Glycosaminoglycans, i.e. GAG or mucopolysaccharides, e.g. chondroitin sulfate, dermatan sulfate, hyaluronic acid, heparin, heparan sulfate, and related sulfated polysaccharides
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/12Pulmonary diseases

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  • the invention belongs to the technical field of molecular biology, and in particular relates to a molecular marker for predicting and monitoring the course of novel coronavirus pneumonia and its application.
  • the progression and outcome of COVID-19 infection are related to a variety of factors, such as age, gender, and the presence or absence of underlying diseases.
  • the plasma of patients with COVID-19 has decreased lymphocytes, especially CD4+ and CD8+ T cells, increased levels of interleukins IL-6 and IL-8, increased D-dimer levels, C-reactive protein (CRP) ) level rises.
  • D-dimer is the most important laboratory index reflecting thrombosis and thrombolytic activity;
  • CRP is an acute phase protein synthesized by hepatocytes when the body is subjected to inflammatory stimuli such as microbial invasion or tissue damage.
  • Sensitive inflammatory markers are closely related to the clinical manifestations and progression of COVID-19, there is still a lack of molecular markers that can effectively predict and monitor the course of COVID-19.
  • Hyaluronic acid is a glycosaminoglycan with disaccharides (D-glucuronic acid and N-acetylglucosamine) as the basic unit, also known as uronic acid and hyaluronic acid.
  • Hyaluronic acid is synthesized by the hyaluronic acid synthase HAS (Hyaluronic Acid Synthase).
  • HAS Hyaluronic Acid Synthase
  • the vertebrate HAS includes HAS1, HAS2 and HAS3.
  • HIS Human Identical Sequence
  • the present invention provides a molecular marker for predicting and monitoring the course of novel coronavirus pneumonia and its application, which can effectively predict and monitor the course of the novel coronavirus.
  • the present invention adopts the following technical solutions:
  • a first aspect of the present invention is to provide a marker for predicting and monitoring the course of COVID-19; wherein, the marker is hyaluronic acid or a combination containing hyaluronic acid, and other markers in the combination Including interleukins, D-dimer (D-D) and/or C-reactive protein (CRP).
  • D-D D-dimer
  • CRP C-reactive protein
  • the technical measures taken by the present invention also include:
  • the hyaluronic acid is plasma hyaluronic acid.
  • the hyaluronic acid is macromolecular hyaluronic acid and/or small molecular hyaluronic acid. Further, the molecular weight of the macromolecular hyaluronic acid is higher than 2000KDa, and the molecular weight of the small molecular hyaluronic acid is 10KDa-2000KDa.
  • the interleukins include interleukin IL-6 and interleukin IL-8.
  • the second aspect of the present invention is to provide the use of any one of the above markers as a molecular marker for predicting and monitoring the course of COVID-19.
  • the plasma hyaluronic acid when the plasma hyaluronic acid is less than 10ng/mL, the patients with new coronary pneumonia are predicted to be mild; when the plasma hyaluronic acid is greater than or equal to 10 ng/mL, the patients with new coronary pneumonia are predicted to be common, severe or critical. Further, when 10ng/mL ⁇ plasma hyaluronic acid ⁇ 48.43ng/mL, the patients with new coronary pneumonia were predicted to be common type; when plasma hyaluronic acid ⁇ 48.43ng/mL, the patients with new coronary pneumonia were predicted to be severe or critical.
  • a third aspect of the present invention is to provide an application of any of the above-mentioned marker detection reagents in the preparation of a product for predicting and monitoring the course of COVID-19.
  • the product predicts that the patient belongs to mild or severe disease by detecting the level of hyaluronic acid in the plasma of patients with new coronary pneumonia. Based on the "New Coronary Virus Pneumonia Diagnosis and Treatment Plan (Trial Version 7)", patients with new crowns can be divided into light, common, severe and critical.
  • the plasma hyaluronic acid when the plasma hyaluronic acid is less than 10ng/mL, the patients with new coronary pneumonia are predicted to be mild; when the plasma hyaluronic acid is greater than or equal to 10 ng/mL, the patients with new coronary pneumonia are predicted to be common, severe or critical.
  • the threshold value of plasma hyaluronic acid determined to be severe is 48.43 ng/mL. That is, when 10ng/mL ⁇ plasma hyaluronic acid ⁇ 48.43ng/mL, the patients with new coronary pneumonia are predicted to be common type; when plasma hyaluronic acid ⁇ 48.43ng/mL, the patients with new coronary pneumonia are predicted to be severe or critical.
  • the product can also detect the levels of interleukin, D-dimer and/or C-reactive protein in the patient's plasma, so as to help predict whether the patient is mild or severe.
  • the above-mentioned other markers can be any suitable markers in the prior art used to assist in predicting or monitoring the course of new coronary pneumonia, and are not limited to the above examples; the above-mentioned reagents for detecting hyaluronic acid are any suitable ones.
  • the substance that can be used to detect the level of hyaluronic acid in plasma; the above-mentioned reagent for detecting the level of interleukin, D-dimer and/or C-reactive protein can be any suitable substance that can be used to detect the level of the above-mentioned component in plasma .
  • the present invention adopts the above-mentioned technical scheme, and has the following technical effects:
  • HIS human identical sequences
  • the present invention discovers and validates for the first time that plasma hyaluronic acid can be used as a molecular marker for distinguishing mild and severe cases of COVID-19, thereby making up for the lack of effective markers for predicting and monitoring the course of COVID-19 in the prior art, which is conducive to the development of Treatment of patients with new coronary pneumonia.
  • Fig. 1 is the HIS (human identical sequences) sequence that exists in SARS-CoV-2 in one embodiment of the present invention and is completely identical to the human genome; wherein, SARS-CoV-2 is abbreviated as SARS2, and the five sequences are named respectively as HIS-SARS2-1, HIS-SARS2-2, HIS-SARS2-3, HIS-SARS2-4, HIS-SARS2-5; the numbers in brackets indicate the sequence in SARS-CoV-2 and human genomes, respectively Location, chr refers to chromosomes.
  • FIG. 2 is a schematic diagram of the results of verifying that overexpressing HIS fragments in HEK293T and MRC5 can up-regulate the expression of hyaluronan synthase HAS2 in an embodiment of the present invention
  • the ordinate in the figure is the relative expression level of HAS2 RNA detected by RT-qPCR, the abscissa For the experimental group transfected with 5 kinds of HIS respectively; **, p ⁇ 0.01; ***, p ⁇ 0.001.
  • FIG. 3 is a schematic diagram of the results of verifying that overexpression of HIS fragments in HEK293T and MRC5 can up-regulate the concentration of hyaluronic acid in the cell culture medium in an embodiment of the present invention; wherein, the ordinate is the concentration of hyaluronic acid in the cell culture medium (ng /mL), the abscissa is the transfection solvent control group mock, the transfection HIS-SARS2-3 and HIS-SARS2-4 groups; **, p ⁇ 0.01; ns, not significance.
  • Figure 4 is a schematic diagram of the comparison of hyaluronic acid levels in the plasma of patients with mild symptoms of the new coronavirus and severe patients in an embodiment of the present invention; wherein, based on the "New Coronary Virus Pneumonia Diagnosis and Treatment Plan (Trial Version 7)", patients with new crowns can be classified as mild , common type, severe type and critical type, where mild disease refers to light type, and severe type includes common type, severe type and critical type; ****, p ⁇ 0.0001.
  • Figure 5 is a schematic diagram of the results of dynamic changes of hyaluronic acid in plasma during the course of the new coronavirus in an embodiment of the present invention; wherein, the ordinate is the concentration of hyaluronic acid (ng/mL), and the abscissa is the course of the patient's disease, measured after blood collection according to time The number of times, 1, 2, and 3 are the 1st, 2nd, and 3rd times, respectively.
  • Figure 6 is a schematic diagram of the results of the lymphocyte levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p ⁇ 0.0001.
  • Figure 7 is a schematic diagram of the results of the D-dimer levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p ⁇ 0.0001.
  • Figure 8 is a schematic diagram of the results of the CRP levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p ⁇ 0.0001.
  • FIG. 9 is a schematic diagram of a result of bioinformatics analysis in an embodiment of the present invention.
  • the present embodiment is the construction of the carrier of HIS overexpression, and its steps include:
  • NC_045512 The new coronavirus SARS-CoV-2 gene sequence (NC_045512) was found from the Nucleotide database Genbank of NCBI (https://www.ncbi.nlm.nih.gov/), and then the whole genome nucleotide sequence of the virus and the human whole Blast alignment of the genome sequence (GRCh38.p13), and finally screened out more than 20 nucleotides and identical nucleotide sequences, and screened out 5 sequences that are completely complementary to the human genome in the new coronavirus SARS-CoV-2 HIS-SARS2-1, HIS-SARS2-2, HIS-SARS2-3, HIS-SARS2-4, HIS-SARS2-5 (as shown in Figure 1).
  • Primer5 software to determine the upstream and downstream primers respectively, then add a protective base and EcoR I restriction site sequence (GAATTC) in front of the 5' end of the upstream primer, and add a protective base and BamH in front of the 5' end of the downstream primer.
  • GATTC protective base and EcoR I restriction site sequence
  • GGATCC I restriction site sequence
  • the PCR product was detected by 1% agarose gel electrophoresis, recovered by gel tapping, and the target fragment was recovered using a common agarose gel DNA recovery kit (Tiangen Biochemical Technology Co., Ltd.); the enzyme digestion process was based on the enzyme digestion system of the NEB website at 37°C. Cut overnight, and use the PCR product recovery kit (Tiangen Biochemical Technology Co., Ltd.) to purify and recover.
  • the digested PCR product and the digested pCDH vector were connected by T4 ligase according to the following ligation system, overnight at 16°C.
  • the connection system is as follows:
  • 10 ⁇ l of the ligation product was added to 50 ⁇ l of DH5 ⁇ competent cells, and incubated on ice for 30 min. After heat shock competent cells at 42°C for 90s, they were immediately placed on ice for 5min. Add 300 ⁇ l of antibiotic-free LB liquid medium to the ultra-clean workbench, and shake the bacteria in a constant temperature shaker at 37°C for 30 min. The bacterial solution was centrifuged at 1000 g for 5 min, and the supernatant was discarded, leaving 50 ⁇ l of bacterial solution, which was evenly spread on an ampicillin-resistant LB solid plate, and cultured overnight in a 37°C constant temperature incubator.
  • the target band can be obtained by vector PCR.
  • Example 2 Effect of cells overexpressing HIS-SARS2 on gene expression levels
  • the present embodiment detects the expression level of HAS2 gene by overexpressing HIS-SARS2 sequence in HEK293T and MRC5 cells, and the steps are briefly described as follows:
  • Lentivirus packaged by liposome method According to molecular cloning, SARS-CoV-2 overexpression plasmid, virus packaging plasmid psPAX2 and capsid plasmid pMD2.G-VSVG were transferred into HEK293T cells, and collected once after 48hr and 72hr. The supernatant was filtered with a 0.45 ⁇ m filter to obtain a lentiviral stock solution.
  • Infected cells spread 200,000 infected cells (lentivirus stock solution) in a 6cm petri dish in advance, wait for the cells to adhere to the wall on the second day and carry out the first infection, and repeat the infection on the third day; the fourth day The cells were allowed to recover for one day without any stimulation; on the fifth day, drug screening was performed on the corresponding drug-killing markers carried by the plasmids.
  • infected cells spread 200,000 infected cells (lentivirus stock solution) in a 6cm petri dish in advance, wait for the cells to adhere to the wall on the second day and carry out the first infection, and repeat the infection on the third day; the fourth day The cells were allowed to recover for one day without any stimulation; on the fifth day, drug screening was performed on the corresponding drug-killing markers carried by the plasmids.
  • Reverse transcription PCR program 42°C for 10 min, 95°C for 2 min.
  • Takara real-time fluorescence quantitative PCR kit was used to detect the expression of the target gene at the transcription level, and the reaction system was as follows:
  • HIS-SAR2-1, HIS-SAR2-2, HIS-SAR2-3, HIS-SAR2-4, HIS-SAR2-5 and HAS2 were detected.
  • the primers are shown in Table 2, and the detection results are shown in Figure 2.
  • HIS-SARS2-3 and HIS-SARS2-4 can up-regulate the expression of HAS2; while in MRC5, HIS-SARS2-1, HIS-SARS2-3 and HIS - SARS2-4 overexpression upregulates HAS2 expression. It can be seen that after overexpression of the HIS sequence, the hyaluronic acid synthase family HAS2 related to the new coronavirus can be significantly activated.
  • the lentivirus and infected cells were prepared by the method of Example 2; the cell supernatant was collected after 24 hours, and the hyaluronic acid ELISA kit (R&D, DY3614-05) was used for detection. The steps are briefly described as follows:
  • ELISA plate coating 100 ⁇ l/well Capture Reagent was coated overnight at room temperature.
  • Closing The clapper removes the Capture Reagent. Wash the plate 3 times with 400 ⁇ l/well Wash buffer and pat dry. Block with 100 ⁇ l/well Dilute Reagent for 1 h.
  • wash the plate and incubate the sample wash the plate 3 times with 400 ⁇ l/well Wash buffer, add 100 ⁇ l/well standard substance and the plasma to be tested (100 ⁇ l of plasma from patients with mild and severe new coronary pneumonia are diluted with Dilute Reagent in the 200 ⁇ l kit to a total volume of 300 ⁇ l, Do 3 duplicate wells) and incubate at room temperature for 2h.
  • the detection result of the hyaluronic acid content in the above-mentioned cell culture medium is shown in Figure 3.
  • overexpressing HIS-SARS2-3 and HIS-SARS2-4 can significantly increase the hyaluronic acid concentration in the culture medium.
  • Overexpression of HIS-SARS2-4 significantly increased the hyaluronic acid concentration in the medium. It can be seen that the level of hyaluronic acid can be significantly up-regulated after HIS overexpression.
  • the plasma hyaluronic acid content of two new crown patients was also dynamically detected.
  • the results are shown in Figure 5.
  • the plasma hyaluronic acid level of the new crown patients showed dynamic changes during the course of the disease.
  • This example redefines the mild and severe cases of COVID-19 based on the plasma hyaluronic acid content, where hyaluronic acid ⁇ 10ng/mL is defined as mild, and hyaluronic acid ⁇ 10 ng/mL is defined as common and above (severe, critical) ELISA method was used to determine the absolute number of lymphocytes, D-dimer and CRP content in the plasma of patients with mild and severe new coronary pneumonia. Blood routine indexes were provided by Shanghai Public Health Clinical Center.
  • D-dimer is a fibrin degradation product, and the increased level of D-dimer indicates that there is a hypercoagulable state and secondary hyperfibrinolysis in the body, so the mass concentration of D-dimer is important for thrombotic diseases.
  • the plasma hyaluronic acid detection values of 137 patients with COVID-19 and the plasma hyaluronic acid detection values of 20 normal persons were used, and the hyaluronic acid value corresponding to the area under the curve with the largest sensitivity and specificity scores was screened.
  • Figure 9 is the receiver operating characteristic curve (Receiver Operating Characteristic, ROC) curve, wherein the area under the curve (Area Under Curve, AUC) is 0.729, the threshold for calculating hyaluronic acid is 48.43ng/mL, which shows that the plasma hyaluronic acid The level of 48.43ng/mL can further distinguish common type, severe and critical type in the new crown, of which 10ng/mL ⁇ plasma hyaluronic acid ⁇ 48.43ng/mL is normal type, plasma hyaluronic acid ⁇ 48.43ng/mL is severe or critical type type, further indicating that the plasma hyaluronic acid level can be used as an indicator to distinguish the severity of the new crown.
  • ROC Receiveiver Operating Characteristic

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Abstract

A molecular marker for predicting and monitoring the disease course of novel coronavirus pneumonia, the molecular marker being hyaluronic acid or a combination containing hyaluronic acid. Other markers in the combination comprise interleukin, D-dimer and/or C-reactive protein. The present invention also relates to the use of the molecular marker as a molecular marker for predicting and monitoring the disease course of novel coronavirus pneumonia, and the use of a detection reagent of the molecular marker in the preparation of a product for predicting and monitoring the disease course of novel coronavirus pneumonia. The level of hyaluronic acid in plasma of patients with severe novel coronavirus pneumonia is significantly increased, and the level of hyaluronic acid is closely related to other molecular changes in patients with novel coronavirus pneumonia, so that the content of hyaluronic acid in the plasma can be used as a molecular marker for distinguishing patients with mild and severe cases of novel coronavirus pneumonia, thus facilitating the treatment of the patients with novel coronavirus pneumonia.

Description

一种新冠肺炎病程预测和监控的分子标志物及其应用A molecular marker for predicting and monitoring the course of novel coronavirus pneumonia and its application 技术领域technical field
本发明属于分子生物学技术领域,尤其涉及一种新冠肺炎病程预测和监控的分子标志物及其应用。The invention belongs to the technical field of molecular biology, and in particular relates to a molecular marker for predicting and monitoring the course of novel coronavirus pneumonia and its application.
背景技术Background technique
自2020年1月起,新冠病毒(SARS-CoV-2)引起的新冠肺炎(COVID-19)疫情在全球扩散,截止到2020年10月25日,已导致全球超过四千万人感染和超过一百万人死亡。基于患者的临床症状,可将新冠患者分为轻型、普通型、重型、危重型。轻型患者表现为低热、轻微乏力、嗅觉及味觉障碍等。在住院病人中最常见的症状为肺部的毛玻璃样病变,而重症患者多在发病一周后出现呼吸困难和(或)低氧血症,严重者可快速进展为急性呼吸窘迫综合征(ARDS)、脓毒症休克、难以纠正的代谢性酸中毒和出凝血功能障碍及多器官功能衰竭等,最终甚至死亡。Since January 2020, the new crown pneumonia (COVID-19) epidemic caused by the new coronavirus (SARS-CoV-2) has spread globally. As of October 25, 2020, more than 40 million people worldwide have been infected and over A million people died. Based on the clinical symptoms of the patients, patients with COVID-19 can be divided into mild, common, severe, and critical. Mild patients present with low fever, mild fatigue, and disturbance of smell and taste. The most common symptoms in hospitalized patients are ground-glass lesions in the lungs, while severe patients often develop dyspnea and/or hypoxemia one week after the onset, and severe cases can rapidly progress to acute respiratory distress syndrome (ARDS). , septic shock, difficult to correct metabolic acidosis and coagulation dysfunction and multiple organ failure, and eventually even death.
针对不同严重程度的患者,国家卫生健康委办公厅和国家中医药管理局办公室发布的《新型冠状病毒肺炎诊疗方案(试行第八版)》推荐了不同的治疗策略,因此,预测和监控新冠肺炎的发展对于新冠患者的救治显得尤为关键。For patients of different severity, the "New Coronary Virus Pneumonia Diagnosis and Treatment Program (Trial Version 8)" issued by the General Office of the National Health Commission and the State Administration of Traditional Chinese Medicine recommends different treatment strategies. Therefore, to predict and monitor the new coronary pneumonia The development of new crown patients is particularly critical for the treatment of new crown patients.
新冠感染的进展和结果与多种因素相关,如年龄、性别、是否有基础病等。在分子水平,新冠患者的血浆中淋巴细胞减少,特别是CD4+和CD8+T细胞,白细胞介素IL-6和IL-8水平升高,D-二聚体水平升高,C反应蛋白(CRP)水平升高。其中,D-二聚体是反映血栓形成与溶栓活性最重要的实验室指标;而CRP是机体受到微生物入侵或组织损伤等炎症性刺激时肝细胞合成的一种急性相蛋白,其是高度灵敏的炎症指标。虽然这些分子水平的变化与COVID-19的临床表现和病程进展密切相关,但目前仍缺乏可有效预测和监控新冠病程的分子标志物。The progression and outcome of COVID-19 infection are related to a variety of factors, such as age, gender, and the presence or absence of underlying diseases. At the molecular level, the plasma of patients with COVID-19 has decreased lymphocytes, especially CD4+ and CD8+ T cells, increased levels of interleukins IL-6 and IL-8, increased D-dimer levels, C-reactive protein (CRP) ) level rises. Among them, D-dimer is the most important laboratory index reflecting thrombosis and thrombolytic activity; CRP is an acute phase protein synthesized by hepatocytes when the body is subjected to inflammatory stimuli such as microbial invasion or tissue damage. Sensitive inflammatory markers. Although these molecular-level changes are closely related to the clinical manifestations and progression of COVID-19, there is still a lack of molecular markers that can effectively predict and monitor the course of COVID-19.
透明质酸(hyaluronic acid,HA)是一种由二糖(D-葡萄糖醛酸和N-乙酰葡糖胺)为基本单元的糖胺聚糖,又称为糖醛酸、玻尿酸。透明质酸由透明质酸合 成酶HAS(Hyaluronic Acid Synthase)合成,脊椎动物HAS包括HAS1、HAS2和HAS3。发明人前期发现来自新冠病毒核酸序列中与人类基因组一致的序列HIS(Human Identical Sequence)可以激活HAS2,进一步促进透明质酸的合成,并发现透明质酸在新冠患者外周血浆中显著升高。但目前透明质酸与新冠肺炎患者的临床症状及其病程进展是否存在密切的联系并未可知。Hyaluronic acid (HA) is a glycosaminoglycan with disaccharides (D-glucuronic acid and N-acetylglucosamine) as the basic unit, also known as uronic acid and hyaluronic acid. Hyaluronic acid is synthesized by the hyaluronic acid synthase HAS (Hyaluronic Acid Synthase). The vertebrate HAS includes HAS1, HAS2 and HAS3. The inventors previously found that the HIS (Human Identical Sequence) sequence from the nucleic acid sequence of the new coronavirus that is consistent with the human genome can activate HAS2 and further promote the synthesis of hyaluronic acid, and found that hyaluronic acid was significantly increased in the peripheral plasma of patients with the new coronavirus. However, it is not known whether there is a close relationship between hyaluronic acid and the clinical symptoms and progression of patients with new coronary pneumonia.
发明内容SUMMARY OF THE INVENTION
为了克服现有技术中的缺陷,本发明提供一种新冠肺炎病程预测和监控的分子标志物及其应用,其可有效预测和监控新冠病程。In order to overcome the defects in the prior art, the present invention provides a molecular marker for predicting and monitoring the course of novel coronavirus pneumonia and its application, which can effectively predict and monitor the course of the novel coronavirus.
为实现上述目的,本发明采用如下技术方案:To achieve the above object, the present invention adopts the following technical solutions:
本发明的第一个方面是提供一种标志物,其用于预测和监控新冠肺炎病程;其中,所述标志物为透明质酸或含有透明质酸的组合,所述组合中的其他标志物包括白细胞介素、D-二聚体(D-D)和/或C反应蛋白(CRP)。A first aspect of the present invention is to provide a marker for predicting and monitoring the course of COVID-19; wherein, the marker is hyaluronic acid or a combination containing hyaluronic acid, and other markers in the combination Including interleukins, D-dimer (D-D) and/or C-reactive protein (CRP).
为了进一步优化上述技术方案,本发明采取的技术措施还包括:In order to further optimize the above-mentioned technical scheme, the technical measures taken by the present invention also include:
进一步地,在上述标志物中,所述透明质酸为血浆透明质酸。Further, in the above markers, the hyaluronic acid is plasma hyaluronic acid.
进一步地,在上述标志物中,所述透明质酸为大分子透明质酸和/或小分子透明质酸。更进一步地,所述大分子透明质酸的分子量为高于2000KDa,所述小分子透明质酸的分子量为10KDa-2000KDa。Further, in the above markers, the hyaluronic acid is macromolecular hyaluronic acid and/or small molecular hyaluronic acid. Further, the molecular weight of the macromolecular hyaluronic acid is higher than 2000KDa, and the molecular weight of the small molecular hyaluronic acid is 10KDa-2000KDa.
进一步地,在上述标志物中,所述白细胞介素包括白细胞介素IL-6、白细胞介素IL-8。Further, in the above markers, the interleukins include interleukin IL-6 and interleukin IL-8.
本发明的第二个方面是提供一种任一上述的标志物作为预测和监控新冠肺炎病程的分子标志物的应用。The second aspect of the present invention is to provide the use of any one of the above markers as a molecular marker for predicting and monitoring the course of COVID-19.
进一步地,在上述应用中,当血浆透明质酸<10ng/mL,预测新冠肺炎患者为轻型;当血浆透明质酸≥10ng/mL,预测新冠肺炎患者为普通型、重型或危重型。更进一步地,当10ng/mL≤血浆透明质酸<48.43ng/mL,预测新冠肺炎患者为普通型;当血浆透明质酸≥48.43ng/mL,预测新冠肺炎患者为重型或危重型。Further, in the above application, when the plasma hyaluronic acid is less than 10ng/mL, the patients with new coronary pneumonia are predicted to be mild; when the plasma hyaluronic acid is greater than or equal to 10 ng/mL, the patients with new coronary pneumonia are predicted to be common, severe or critical. Further, when 10ng/mL≤plasma hyaluronic acid<48.43ng/mL, the patients with new coronary pneumonia were predicted to be common type; when plasma hyaluronic acid≥48.43ng/mL, the patients with new coronary pneumonia were predicted to be severe or critical.
本发明的第三个方面是提供一种任一上述的标志物的检测试剂在制备预测和监控新冠肺炎病程的产品中的应用。A third aspect of the present invention is to provide an application of any of the above-mentioned marker detection reagents in the preparation of a product for predicting and monitoring the course of COVID-19.
进一步地,在上述应用,所述产品通过检测新冠肺炎患者血浆中透明质酸水 平从而预测患者属于轻症或重症。基于《新型冠状病毒肺炎诊疗方案(试行第七版)》可将新冠患者划分为轻型、普通型、重型和危重型,上述轻症指轻型,上述重症包括普通型、重型和危重型。Further, in the above application, the product predicts that the patient belongs to mild or severe disease by detecting the level of hyaluronic acid in the plasma of patients with new coronary pneumonia. Based on the "New Coronary Virus Pneumonia Diagnosis and Treatment Plan (Trial Version 7)", patients with new crowns can be divided into light, common, severe and critical.
进一步地,在上述应用中,当血浆透明质酸<10ng/mL,预测新冠肺炎患者为轻型;当血浆透明质酸≥10ng/mL,预测新冠肺炎患者为普通型、重型或危重型。Further, in the above application, when the plasma hyaluronic acid is less than 10ng/mL, the patients with new coronary pneumonia are predicted to be mild; when the plasma hyaluronic acid is greater than or equal to 10 ng/mL, the patients with new coronary pneumonia are predicted to be common, severe or critical.
进一步地,在上述应用中,判定为重型的血浆透明质酸的阈值为48.43ng/mL。即,当10ng/mL≤血浆透明质酸<48.43ng/mL,预测新冠肺炎患者为普通型;当血浆透明质酸≥48.43ng/mL,预测新冠肺炎患者为重型或危重型。Further, in the above application, the threshold value of plasma hyaluronic acid determined to be severe is 48.43 ng/mL. That is, when 10ng/mL≤plasma hyaluronic acid<48.43ng/mL, the patients with new coronary pneumonia are predicted to be common type; when plasma hyaluronic acid≥48.43ng/mL, the patients with new coronary pneumonia are predicted to be severe or critical.
进一步地,在上述应用中,所述产品还可检测患者血浆中白细胞介素、D-二聚体和/或C反应蛋白的水平,以辅助预测患者属于轻症或重症。Further, in the above application, the product can also detect the levels of interleukin, D-dimer and/or C-reactive protein in the patient's plasma, so as to help predict whether the patient is mild or severe.
可理解的是,上述其他标志物可为现有技术中任一合适的用于辅助预测或监控新冠肺炎病程的标志物,并不仅限于上述例举;上述检测透明质酸的试剂为任一合适的可用于检测血浆中透明质酸水平的物质;上述检测白细胞介素、D-二聚体和/或C反应蛋白水平的试剂可为任一合适的可用于检测血浆中上述组分水平的物质。It can be understood that the above-mentioned other markers can be any suitable markers in the prior art used to assist in predicting or monitoring the course of new coronary pneumonia, and are not limited to the above examples; the above-mentioned reagents for detecting hyaluronic acid are any suitable ones. The substance that can be used to detect the level of hyaluronic acid in plasma; the above-mentioned reagent for detecting the level of interleukin, D-dimer and/or C-reactive protein can be any suitable substance that can be used to detect the level of the above-mentioned component in plasma .
与现有技术相比,本发明采用上述技术方案,具有如下技术效果:Compared with the prior art, the present invention adopts the above-mentioned technical scheme, and has the following technical effects:
基于发明人前期发现SARS-CoV-2的基因组中存在5段与人类基因组完全相同的序列(命名为“human identical sequences(HIS)”),经过分子生物学和细胞生物学实验证实,HIS可激活透明质酸合成酶2(HAS2)的表达,进而上调透明质酸水平,本发明通过进一步研究发现重症新冠肺炎患者血浆中透明质酸水平显著升高,且透明质酸水平与新冠患者中其他分子(例如白细胞介素、D-二聚体和、C反应蛋白)变化密切相关。Based on the inventor's earlier discovery that 5 segments of the SARS-CoV-2 genome are identical to the human genome (named "human identical sequences (HIS)"), it was confirmed by molecular biology and cell biology experiments that HIS can activate The expression of hyaluronic acid synthase 2 (HAS2), thereby up-regulating the level of hyaluronic acid, the present invention found through further research that the level of hyaluronic acid in the plasma of patients with severe new coronary pneumonia was significantly increased, and the level of hyaluronic acid was closely related to other molecules in patients with new coronary pneumonia. (eg interleukin, D-dimer and, C-reactive protein) changes are closely related.
本发明首次发现并通过验证得出可将血浆透明质酸作为区分新冠患者轻症和重症的分子标志物,从而弥补了现有技术中缺失预测和监控新冠病程的有效标志物的不足,利于进行新冠肺炎患者的救治。The present invention discovers and validates for the first time that plasma hyaluronic acid can be used as a molecular marker for distinguishing mild and severe cases of COVID-19, thereby making up for the lack of effective markers for predicting and monitoring the course of COVID-19 in the prior art, which is conducive to the development of Treatment of patients with new coronary pneumonia.
附图说明Description of drawings
图1为本发明一实施例中SARS-CoV-2中存在的5段与人类基因组完全相同 的HIS(human identical sequences)序列;其中,SARS-CoV-2缩写为SARS2,5段序列分别命名为HIS-SARS2-1、HIS-SARS2-2、HIS-SARS2-3、HIS-SARS2-4、HIS-SARS2-5;括号中的数字表示该段序列分别在SARS-CoV-2和人类基因组中的位置,chr指染色体(chromatin)。Fig. 1 is the HIS (human identical sequences) sequence that exists in SARS-CoV-2 in one embodiment of the present invention and is completely identical to the human genome; wherein, SARS-CoV-2 is abbreviated as SARS2, and the five sequences are named respectively as HIS-SARS2-1, HIS-SARS2-2, HIS-SARS2-3, HIS-SARS2-4, HIS-SARS2-5; the numbers in brackets indicate the sequence in SARS-CoV-2 and human genomes, respectively Location, chr refers to chromosomes.
图2为本发明一实施例中验证HEK293T和MRC5中过表达HIS片段可上调透明质酸合成酶HAS2的表达的结果示意图;图中纵坐标为RT-qPCR检测的HAS2RNA的相对表达水平,横坐标为分别转染5种HIS的实验组;**,p<0.01;***,p<0.001。2 is a schematic diagram of the results of verifying that overexpressing HIS fragments in HEK293T and MRC5 can up-regulate the expression of hyaluronan synthase HAS2 in an embodiment of the present invention; the ordinate in the figure is the relative expression level of HAS2 RNA detected by RT-qPCR, the abscissa For the experimental group transfected with 5 kinds of HIS respectively; **, p<0.01; ***, p<0.001.
图3为本发明一实施例中验证在HEK293T和MRC5中过表达HIS片段可上调细胞培养基中透明质酸的浓度的结果示意图;其中,纵坐标为细胞培养基中透明质酸的浓度(ng/mL),横坐标为转染溶剂对照组mock、转染HIS-SARS2-3和HIS-SARS2-4组;**,p<0.01;ns,not significance。3 is a schematic diagram of the results of verifying that overexpression of HIS fragments in HEK293T and MRC5 can up-regulate the concentration of hyaluronic acid in the cell culture medium in an embodiment of the present invention; wherein, the ordinate is the concentration of hyaluronic acid in the cell culture medium (ng /mL), the abscissa is the transfection solvent control group mock, the transfection HIS-SARS2-3 and HIS-SARS2-4 groups; **, p<0.01; ns, not significance.
图4为本发明一实施例中新冠轻症患者与重症患者血浆中透明质酸水平的对比示意图;其中,基于《新型冠状病毒肺炎诊疗方案(试行第七版)》可将新冠患者划分为轻型、普通型、重型和危重型,这里的轻症指轻型,重症包括普通型、重型和危重型;****,p<0.0001。Figure 4 is a schematic diagram of the comparison of hyaluronic acid levels in the plasma of patients with mild symptoms of the new coronavirus and severe patients in an embodiment of the present invention; wherein, based on the "New Coronary Virus Pneumonia Diagnosis and Treatment Plan (Trial Version 7)", patients with new crowns can be classified as mild , common type, severe type and critical type, where mild disease refers to light type, and severe type includes common type, severe type and critical type; ****, p<0.0001.
图5为本发明一实施例中血浆中透明质酸在新冠病程中呈现动态变化的结果示意图;其中,纵坐标为透明质酸浓度(ng/mL),横坐标为病人病程按时间采血后测定次数,1、2、3分别为第1次、第2次和第3次。Figure 5 is a schematic diagram of the results of dynamic changes of hyaluronic acid in plasma during the course of the new coronavirus in an embodiment of the present invention; wherein, the ordinate is the concentration of hyaluronic acid (ng/mL), and the abscissa is the course of the patient's disease, measured after blood collection according to time The number of times, 1, 2, and 3 are the 1st, 2nd, and 3rd times, respectively.
图6为本发明一实施例中以透明质酸水平作为分类标准,不同透明质酸水平的新冠患者血浆中的淋巴细胞水平的结果示意图;****,p<0.0001。Figure 6 is a schematic diagram of the results of the lymphocyte levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p<0.0001.
图7为本发明一实施例中以透明质酸水平作为分类标准,不同透明质酸水平的新冠患者血浆中的D-二聚体水平的结果示意图;****,p<0.0001。Figure 7 is a schematic diagram of the results of the D-dimer levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p<0.0001.
图8为本发明一实施例中以透明质酸水平作为分类标准,不同透明质酸水平的新冠患者血浆中的CRP水平的结果示意图;****,p<0.0001。Figure 8 is a schematic diagram of the results of the CRP levels in the plasma of new crown patients with different hyaluronic acid levels using the hyaluronic acid level as the classification standard in an embodiment of the present invention; ****, p<0.0001.
图9为本发明一实施例中生物信息学分析的结果示意图。FIG. 9 is a schematic diagram of a result of bioinformatics analysis in an embodiment of the present invention.
具体实施方式Detailed ways
下面结合附图和实施例,对本发明的具体实施方式作进一步描述。以下实施 例仅用于更加清楚地说明本发明的技术方案,而不能以此来限制本发明的保护范围。下列实施例中未注明具体条件的实验方法,按照本领域常规方法和条件,或按照商品说明书选择。The specific embodiments of the present invention will be further described below with reference to the accompanying drawings and embodiments. The following examples are only used to more clearly illustrate the technical solutions of the present invention, and cannot be used to limit the protection scope of the present invention. In the following examples, the experimental methods without specific conditions are selected according to the conventional methods and conditions in the art, or according to the product description.
实施例1-构建用于HIS过表达的载体Example 1 - Construction of vectors for HIS overexpression
本实施例为HIS过表达的载体的构建,其步骤包括:The present embodiment is the construction of the carrier of HIS overexpression, and its steps include:
1、序列获取-SARS-CoV-2中鉴定human identical sequence(HIS)1. Sequence acquisition-identification of human identical sequence (HIS) in SARS-CoV-2
从NCBI(https://www.ncbi.nlm.nih.gov/)的Nucleotide数据库Genbank上找到新冠病毒SARS-CoV-2基因序列(NC_045512),然后将病毒的全基因组核苷酸序列和人类全基因组序列(GRCh38.p13)进行Blast比对,最终筛选出大于20个核苷酸且完全相同的核苷酸序列,在新冠病毒SARS-CoV-2筛选出5段与人基因组完全互补配对的序列HIS-SARS2-1、HIS-SARS2-2、HIS-SARS2-3、HIS-SARS2-4、HIS-SARS2-5(如图1所示)。The new coronavirus SARS-CoV-2 gene sequence (NC_045512) was found from the Nucleotide database Genbank of NCBI (https://www.ncbi.nlm.nih.gov/), and then the whole genome nucleotide sequence of the virus and the human whole Blast alignment of the genome sequence (GRCh38.p13), and finally screened out more than 20 nucleotides and identical nucleotide sequences, and screened out 5 sequences that are completely complementary to the human genome in the new coronavirus SARS-CoV-2 HIS-SARS2-1, HIS-SARS2-2, HIS-SARS2-3, HIS-SARS2-4, HIS-SARS2-5 (as shown in Figure 1).
2、扩增目的片段2. Amplify the target fragment
根据利用Primer5软件分别确定上下游引物,再在上游引物的5'端前面加上保护碱基和EcoR I酶切位点序列(GAATTC),下游引物的5'端前面加上保护碱基和BamH I酶切位点序列(GGATCC)。引物序列如下表1所示,引物委托上海派森诺生物科技有限公司进行合成。According to the use of Primer5 software to determine the upstream and downstream primers respectively, then add a protective base and EcoR I restriction site sequence (GAATTC) in front of the 5' end of the upstream primer, and add a protective base and BamH in front of the 5' end of the downstream primer. I restriction site sequence (GGATCC). The primer sequences are shown in Table 1 below, and the primers were entrusted to Shanghai Paisenuo Biotechnology Co., Ltd. for synthesis.
表1-SARS-CoV-2相关引物Table 1 - SARS-CoV-2 related primers
Figure PCTCN2021127006-appb-000001
Figure PCTCN2021127006-appb-000001
Figure PCTCN2021127006-appb-000002
Figure PCTCN2021127006-appb-000002
利用同源重组人工合成病毒靶点片段,根据序列设计的F与R1引物进行退火后,利用F和R2与F和R3进行两轮巢氏PCR,Q5酶扩增目的基因片段,扩增体系和程序如下:Use homologous recombination to artificially synthesize viral target fragments, after annealing the F and R1 primers designed according to the sequence, use F and R2 and F and R3 to carry out two rounds of nested PCR, Q5 enzyme to amplify the target gene fragment, the amplification system and The procedure is as follows:
Figure PCTCN2021127006-appb-000003
Figure PCTCN2021127006-appb-000003
PCR程序:98℃ 30s;PCR program: 98℃ for 30s;
98℃ 10s,55~72℃ 30s,72℃ 30s/kb,35个循环;98℃ for 10s, 55~72℃ for 30s, 72℃ for 30s/kb, 35 cycles;
72℃ 2min。72℃ for 2min.
3、PCR产物的回收、酶切及纯化3. Recovery, digestion and purification of PCR products
将PCR产物进行1%琼脂糖凝胶电泳检测,割胶回收,并使用普通琼脂糖凝胶DNA回收试剂盒(天根生化科技公司)回收目的片段;酶切过程参照NEB网站酶切体系37℃酶切过夜,并采用PCR产物回收试剂盒(天根生化科技公司)纯化回收。The PCR product was detected by 1% agarose gel electrophoresis, recovered by gel tapping, and the target fragment was recovered using a common agarose gel DNA recovery kit (Tiangen Biochemical Technology Co., Ltd.); the enzyme digestion process was based on the enzyme digestion system of the NEB website at 37°C. Cut overnight, and use the PCR product recovery kit (Tiangen Biochemical Technology Co., Ltd.) to purify and recover.
4、连接4. Connection
利用T4连接酶将酶切后的PCR产物和酶切后的pCDH载体按照如下连接体系连接,16℃过夜。连接体系如下:The digested PCR product and the digested pCDH vector were connected by T4 ligase according to the following ligation system, overnight at 16°C. The connection system is as follows:
Figure PCTCN2021127006-appb-000004
Figure PCTCN2021127006-appb-000004
5、转化、挑取单克隆连接5. Transform and pick monoclonal ligation
将10μl的连接产物加入50μl的DH5α感受态细胞中,冰上孵育30min。42℃热激感受态细胞90s后,立即放到冰上5min。在超净工作台中加入300μl不含抗生素的LB液体培养基,37℃恒温摇床中摇菌30min。菌液1000g离心5min后弃上清,剩50μl菌液,将其均匀涂到氨苄抗性的LB固体平板上,37℃恒温培养箱培养过夜。从过夜培养的平板上挑取适量单克隆菌落,分别放入加有200μl氨苄抗性LB液体培养基的EP管中,37℃恒温摇床中摇菌2小时后送测序鉴定。最后通过载体PCR可以得到目的条带。10 μl of the ligation product was added to 50 μl of DH5α competent cells, and incubated on ice for 30 min. After heat shock competent cells at 42°C for 90s, they were immediately placed on ice for 5min. Add 300 μl of antibiotic-free LB liquid medium to the ultra-clean workbench, and shake the bacteria in a constant temperature shaker at 37°C for 30 min. The bacterial solution was centrifuged at 1000 g for 5 min, and the supernatant was discarded, leaving 50 μl of bacterial solution, which was evenly spread on an ampicillin-resistant LB solid plate, and cultured overnight in a 37°C constant temperature incubator. Pick an appropriate amount of monoclonal colonies from the plates cultured overnight, put them into EP tubes with 200 μl of ampicillin-resistant LB liquid medium, and shake the bacteria in a constant temperature shaker at 37°C for 2 hours before sending for sequencing identification. Finally, the target band can be obtained by vector PCR.
实施例2–细胞过表达HIS-SARS2对基因表达水平的影响Example 2 - Effect of cells overexpressing HIS-SARS2 on gene expression levels
本实施例对HEK293T和MRC5细胞中过表达HIS-SARS2序列对HAS2基因表达水平进行检测,其步骤简述如下:The present embodiment detects the expression level of HAS2 gene by overexpressing HIS-SARS2 sequence in HEK293T and MRC5 cells, and the steps are briefly described as follows:
1、脂质体法包制慢病毒:依照分子克隆,将SARS-CoV-2过表达质粒及病毒包装质粒psPAX2和衣壳质粒pMD2.G-VSVG转入HEK293T细胞,48hr和72hr后各收取一次上清,0.45μm滤器过滤细胞碎片后得到慢病毒原液。1. Lentivirus packaged by liposome method: According to molecular cloning, SARS-CoV-2 overexpression plasmid, virus packaging plasmid psPAX2 and capsid plasmid pMD2.G-VSVG were transferred into HEK293T cells, and collected once after 48hr and 72hr. The supernatant was filtered with a 0.45 μm filter to obtain a lentiviral stock solution.
2、感染细胞:提前将被感染的细胞(慢病毒原液)铺20万于6cm培养皿中,待第二天细胞贴壁之后进行第一次感染,第三天再重复感染一次;第四天让细胞恢复一天不加入任何刺激;第五天开始对质粒所带的对应杀药标记进行药物筛选。2. Infected cells: spread 200,000 infected cells (lentivirus stock solution) in a 6cm petri dish in advance, wait for the cells to adhere to the wall on the second day and carry out the first infection, and repeat the infection on the third day; the fourth day The cells were allowed to recover for one day without any stimulation; on the fifth day, drug screening was performed on the corresponding drug-killing markers carried by the plasmids.
3、实时荧光定量PCR3. Real-time fluorescent quantitative PCR
(1)总RNA提取(1) Total RNA extraction
准备10 6~10 7细胞,用PBS重悬后离心去除上清,加入1ml TRIzol室温裂解5min,然后加入0.2ml氯仿,涡旋震荡仪震荡15s,室温静置2min。4℃离心机离心15min,13,300rpm。转移上层无色水相于另一EP管中。加入等体积异丙醇,涡旋震荡仪充分混合,入4℃离心机离心10min,13,300rpm。倒掉上清,加入DEPC水配制的75%乙醇1ml,上下颠倒至沉淀悬浮起来,入4℃离心机离心5min,13,300rpm。用移液器吸尽上清,室温干燥5~20min,期间观察沉淀形态,待其刚刚变透明时,根据沉淀的量将其溶解于40~100μl DEPC水中。取1μl在Nanodrop上测定其浓度以及OD260/OD280。提取的RNA于-80℃冰箱保存。 Prepare 10 6 -10 7 cells, resuspend in PBS, remove the supernatant by centrifugation, add 1 ml of TRIzol for lysis at room temperature for 5 min, then add 0.2 ml of chloroform, shake with a vortex shaker for 15 s, and stand at room temperature for 2 min. Centrifuge at 4°C for 15 min, 13,300 rpm. Transfer the upper colorless aqueous phase to another EP tube. Add an equal volume of isopropanol, mix thoroughly with a vortex shaker, and centrifuge at 4°C for 10 min at 13,300 rpm. Pour off the supernatant, add 1 ml of 75% ethanol prepared with DEPC water, invert up and down until the precipitate is suspended, and centrifuge in a 4°C centrifuge for 5 min at 13,300 rpm. Use a pipette to suck up the supernatant, dry at room temperature for 5-20 min, and observe the form of the precipitate during the period. When it just becomes transparent, dissolve it in 40-100 μl of DEPC water according to the amount of the precipitate. Take 1 μl to measure its concentration and OD260/OD280 on Nanodrop. The extracted RNA was stored in a -80°C refrigerator.
(2)逆转录合成cDNA(2) Synthesis of cDNA by reverse transcription
使用Takara(D2680A)的反转录PCR试剂盒,PCR反应体系和程序如下:Using the reverse transcription PCR kit of Takara (D2680A), the PCR reaction system and procedures are as follows:
Figure PCTCN2021127006-appb-000005
Figure PCTCN2021127006-appb-000005
反转录PCR程序:42℃ 10min,95℃ 2min。Reverse transcription PCR program: 42°C for 10 min, 95°C for 2 min.
(3)RT-qPCR(3) RT-qPCR
使用Takara实时荧光定量PCR试剂盒检测目的基因转录水平上的表达情况,其反应体系如下:Takara real-time fluorescence quantitative PCR kit was used to detect the expression of the target gene at the transcription level, and the reaction system was as follows:
Figure PCTCN2021127006-appb-000006
Figure PCTCN2021127006-appb-000006
检测HIS-SAR2-1、HIS-SAR2-2、HIS-SAR2-3、HIS-SAR2-4、HIS-SAR2-5和HAS2的表达,其引物见表2,其检测结果如图2所示。The expressions of HIS-SAR2-1, HIS-SAR2-2, HIS-SAR2-3, HIS-SAR2-4, HIS-SAR2-5 and HAS2 were detected. The primers are shown in Table 2, and the detection results are shown in Figure 2.
表2-RT-qPCR的引物序列Table 2 - Primer sequences for RT-qPCR
Figure PCTCN2021127006-appb-000007
Figure PCTCN2021127006-appb-000007
由图2的检测结果可知,在HEK293T细胞中,HIS-SARS2-3和HIS-SARS2-4过表达可上调HAS2的表达;而在MRC5中,HIS-SARS2-1、HIS-SARS2-3和HIS-SARS2-4过表达可上调HAS2的表达。由此可知,在过表达HIS序列后,与新冠病毒相关的透明质酸合成酶家族HAS2可被显著激活。It can be seen from the detection results in Figure 2 that in HEK293T cells, the overexpression of HIS-SARS2-3 and HIS-SARS2-4 can up-regulate the expression of HAS2; while in MRC5, HIS-SARS2-1, HIS-SARS2-3 and HIS - SARS2-4 overexpression upregulates HAS2 expression. It can be seen that after overexpression of the HIS sequence, the hyaluronic acid synthase family HAS2 related to the new coronavirus can be significantly activated.
实施例3-HIS过表达后细胞培养基中透明质酸水平的鉴定Example 3 - Identification of hyaluronic acid levels in cell culture media after HIS overexpression
采用实施例2的方法制备慢病毒和感染细胞;24小时后收取细胞上清,进行透明质酸ELISA试剂盒(R&D,DY3614-05)进行检测。步骤简述如下:The lentivirus and infected cells were prepared by the method of Example 2; the cell supernatant was collected after 24 hours, and the hyaluronic acid ELISA kit (R&D, DY3614-05) was used for detection. The steps are briefly described as follows:
1、ELISA板包被:100μl/孔Capture Reagent室温包被过夜。1. ELISA plate coating: 100μl/well Capture Reagent was coated overnight at room temperature.
2、封闭:拍板除去Capture Reagent。400μl/孔Wash buffer洗板3次拍干。使用100μl/孔Dilute Reagent封闭1h。2. Closing: The clapper removes the Capture Reagent. Wash the plate 3 times with 400 μl/well Wash buffer and pat dry. Block with 100 μl/well Dilute Reagent for 1 h.
3、洗板孵育样品:400μl/孔Wash buffer洗板3次,加100μl/孔标准品与待测血浆(轻症和重症新冠肺炎患者血浆100μl用200μl试剂盒中Dilute Reagent稀释成总体积300μl,做3复孔)室温孵育2h。3. Wash the plate and incubate the sample: wash the plate 3 times with 400μl/well Wash buffer, add 100μl/well standard substance and the plasma to be tested (100μl of plasma from patients with mild and severe new coronary pneumonia are diluted with Dilute Reagent in the 200μl kit to a total volume of 300μl, Do 3 duplicate wells) and incubate at room temperature for 2h.
4、洗板孵育Detect Reagent。400μl/孔Wash buffer洗板3次,加100μl/孔Detect Reagent室温孵育2h。4. Wash the plate and incubate Detect Reagent. Wash the plate 3 times with 400 μl/well Wash buffer, add 100 μl/well Detect Reagent and incubate at room temperature for 2 h.
5、洗板孵育HRP。400μl/孔Wash buffer洗板3次,加100μl/孔HRP室温孵育20min。5. Wash the plate and incubate with HRP. Wash the plate 3 times with 400 μl/well Wash buffer, add 100 μl/well HRP and incubate at room temperature for 20 min.
6、洗板孵育底物。400μl/孔Wash buffer洗板3次,加100μl/孔A、B底物混合液,室温孵育20min。6. Wash the plate and incubate the substrate. Wash the plate 3 times with 400 μl/well Wash buffer, add 100 μl/well A and B substrate mixture, and incubate at room temperature for 20 min.
7、终止显色。加50μl/孔stop solution。15分钟内读取450nm吸光度。7. Terminate color development. Add 50μl/well stop solution. Read absorbance at 450 nm within 15 minutes.
上述细胞培养基中透明质酸含量的检测结果如图3所示,在HEK293T中过表达HIS-SARS2-3和HIS-SARS2-4均可显著升高培养基中透明质酸浓度,在MRC5中过表达HIS-SARS2-4可显著升高培养基中透明质酸浓度。由此可知,HIS过表达后可显著上调透明质酸的水平。The detection result of the hyaluronic acid content in the above-mentioned cell culture medium is shown in Figure 3. In HEK293T, overexpressing HIS-SARS2-3 and HIS-SARS2-4 can significantly increase the hyaluronic acid concentration in the culture medium. Overexpression of HIS-SARS2-4 significantly increased the hyaluronic acid concentration in the medium. It can be seen that the level of hyaluronic acid can be significantly up-regulated after HIS overexpression.
实施例4-ELISA法测血浆中透明质酸浓度Example 4-ELISA method to measure the concentration of hyaluronic acid in plasma
本实施例基于临床CT结果定义轻症和重症,采用ELISA法测定轻症与重症新冠肺炎患者血浆中透明质酸含量,其按照R&D公司的透明质酸ELISA试剂盒(R&D,DY3614-05)使用说明进行实验,具体步骤参照实施例3。In this example, mild and severe cases were defined based on clinical CT results, and the hyaluronic acid content in the plasma of patients with mild and severe new coronary pneumonia was determined by ELISA, which was used according to the hyaluronic acid ELISA kit (R&D, DY3614-05) of R&D Company. Experiments are described, and the specific steps refer to Example 3.
上述血浆中透明质酸含量的检测结果如图4所示,对比轻症的新冠肺炎患者,重症的新冠肺炎患者血浆中透明质酸含量显著升高。The detection results of hyaluronic acid content in the above plasma are shown in Figure 4. Compared with mild new coronary pneumonia patients, the plasma hyaluronic acid content of severe new coronary pneumonia patients was significantly increased.
本实施例还对两位新冠患者血浆透明质酸含量进行动态检测,其结果如图5所示,新冠患者病程中血浆透明质酸水平呈现动态变化。In this example, the plasma hyaluronic acid content of two new crown patients was also dynamically detected. The results are shown in Figure 5. The plasma hyaluronic acid level of the new crown patients showed dynamic changes during the course of the disease.
实施例5-血常规指标检测Embodiment 5-blood routine index detection
本实施例以血浆透明质酸含量重新定义新冠肺炎的轻症和重症,其中透明质酸<10ng/mL定义为轻型,透明质酸≥10ng/mL定义为普通型及以上(重型、危重型);采用ELISA法测定轻症与重症新冠肺炎患者血浆中淋巴细胞绝对数、D-二聚体以及CRP含量。血常规指标由上海市公共卫生临床中心提供。This example redefines the mild and severe cases of COVID-19 based on the plasma hyaluronic acid content, where hyaluronic acid <10ng/mL is defined as mild, and hyaluronic acid ≥10 ng/mL is defined as common and above (severe, critical) ELISA method was used to determine the absolute number of lymphocytes, D-dimer and CRP content in the plasma of patients with mild and severe new coronary pneumonia. Blood routine indexes were provided by Shanghai Public Health Clinical Center.
基于透明质酸水平的定义,发现重症新冠肺炎患者淋巴细胞数目显著低于轻症新冠肺炎患者,与此前文献报道的数据相符,且提示患者免疫细胞随着病情加重而降低(如图6所示);而D-二聚体是纤维蛋白降解产物,D-二聚体水平升高说明体内存在高凝状态和继发性的纤维蛋白溶解亢进,因此D-二聚体质量浓度对血栓性疾病具有诊断意义,而重症的新冠肺炎患者血浆中D-二聚体含量显著高于轻症患者(如图7所示),与此前文献报道的数据相符,提示患者凝血风险随着新冠肺炎病情的加重而增加,也提示后续的抗凝治疗存在一定的可行性; 重症患者中CRP水平高于轻症患者(如图8所示),与此前文献报道的数据相符,提示新冠病毒感染后可触发宿主的炎症反应。Based on the definition of hyaluronic acid level, it was found that the number of lymphocytes in patients with severe new coronary pneumonia was significantly lower than that in patients with mild new coronary pneumonia, which was consistent with the data reported in the previous literature, and suggested that the immune cells of patients decreased with the aggravation of the disease (as shown in Figure 6). ); and D-dimer is a fibrin degradation product, and the increased level of D-dimer indicates that there is a hypercoagulable state and secondary hyperfibrinolysis in the body, so the mass concentration of D-dimer is important for thrombotic diseases. It is of diagnostic significance, and the plasma D-dimer content of severe new coronary pneumonia patients is significantly higher than that of mild patients (as shown in Figure 7), which is consistent with the data reported in the previous literature, suggesting that the coagulation risk of patients increases with the progression of new coronary pneumonia. The aggravation and increase also indicate the feasibility of follow-up anticoagulation therapy; the CRP level in severe patients is higher than that in mild patients (as shown in Figure 8), which is consistent with the data reported in the previous literature, suggesting that new coronavirus infection can be triggered Inflammatory response of the host.
由上述结果可知,相比血浆透明质酸<10ng/mL的新冠轻症患者,血浆中透明质酸水平≥10ng/mL的新冠重症患者血浆中淋巴细胞水平显著更低,D-二聚体水平显著更高,CRP水平显著更高,这均提示血浆透明质酸可作为有效的新冠肺炎患者病程的分类指标。From the above results, it can be seen that compared with patients with mild new coronary disease with plasma hyaluronic acid <10ng/mL, the level of lymphocytes in the plasma of patients with severe new coronary disease with plasma hyaluronic acid level ≥10ng/mL was significantly lower, and the level of D-dimer was significantly lower. Significantly higher, and CRP levels were significantly higher, all suggesting that plasma hyaluronic acid can be used as an effective classification indicator for the course of disease in patients with new coronary pneumonia.
实施例6-生物信息学分析透明质酸的cutoff值(阈值)Example 6 - Bioinformatics analysis of cutoff value (threshold value) of hyaluronic acid
本实施例使用137位新冠患者血浆透明质酸检测值和20位正常人的血浆透明质酸检测值,并筛选敏感性和特异性得分最大的曲线下面积时对应的透明质酸值。图9为受试者工作特征曲线(Receiver Operating Characteristic,ROC)曲线,其中曲线下面积(Area Under Curve,AUC)为0.729,计算透明质酸的阈为48.43ng/mL,这显示血浆透明质酸水平48.43ng/mL可进一步区分新冠中的普通型和重型及危重型,其中10ng/mL≤血浆透明质酸<48.43ng/mL为普通型,血浆透明质酸≥48.43ng/mL为重型或危重型,进一步说明血浆透明质酸水平可作为区分新冠严重程度的指标。In this example, the plasma hyaluronic acid detection values of 137 patients with COVID-19 and the plasma hyaluronic acid detection values of 20 normal persons were used, and the hyaluronic acid value corresponding to the area under the curve with the largest sensitivity and specificity scores was screened. Figure 9 is the receiver operating characteristic curve (Receiver Operating Characteristic, ROC) curve, wherein the area under the curve (Area Under Curve, AUC) is 0.729, the threshold for calculating hyaluronic acid is 48.43ng/mL, which shows that the plasma hyaluronic acid The level of 48.43ng/mL can further distinguish common type, severe and critical type in the new crown, of which 10ng/mL≤plasma hyaluronic acid<48.43ng/mL is normal type, plasma hyaluronic acid≥48.43ng/mL is severe or critical type type, further indicating that the plasma hyaluronic acid level can be used as an indicator to distinguish the severity of the new crown.
以上对本发明的具体实施例进行了详细描述,但其只作为范例,本发明并不限制于以上描述的具体实施例。对于本领域技术人员而言,任何对本发明进行的等同修改和替代也都在本发明的范畴之中。因此,在不脱离本发明的精神和范围下所作的均等变换和修改,都应涵盖在本发明的范围内。The specific embodiments of the present invention have been described above in detail, but they are only used as examples, and the present invention is not limited to the specific embodiments described above. For those skilled in the art, any equivalent modifications and substitutions made to the present invention are also within the scope of the present invention. Therefore, equivalent changes and modifications made without departing from the spirit and scope of the present invention should be included within the scope of the present invention.

Claims (10)

  1. 一种标志物,其特征在于,所述标志物用于预测和监控新冠肺炎病程;其中,所述标志物为透明质酸或含有透明质酸的组合,所述组合中的其他标志物包括白细胞介素、D-二聚体和/或C反应蛋白。A marker, characterized in that, the marker is used to predict and monitor the course of new coronary pneumonia; wherein, the marker is hyaluronic acid or a combination containing hyaluronic acid, and other markers in the combination include leukocytes Interkines, D-dimers and/or C-reactive protein.
  2. 根据权利要求1所述的标志物,其特征在于,所述透明质酸为血浆透明质酸。The marker according to claim 1, wherein the hyaluronic acid is plasma hyaluronic acid.
  3. 根据权利要求1所述的标志物,其特征在于,所述透明质酸为大分子透明质酸和/或小分子透明质酸。The marker according to claim 1, wherein the hyaluronic acid is macromolecular hyaluronic acid and/or small molecular hyaluronic acid.
  4. 根据权利要求3所述的标志物,其特征在于,所述大分子透明质酸的分子量为高于2000KDa,所述小分子透明质酸的分子量为10KDa-2000KDa。The marker according to claim 3, wherein the molecular weight of the macromolecular hyaluronic acid is higher than 2000KDa, and the molecular weight of the small molecular hyaluronic acid is 10KDa-2000KDa.
  5. 根据权利要求1所述的标志物,其特征在于,所述白细胞介素包括白细胞介素IL-6、白细胞介素IL-8。The marker according to claim 1, wherein the interleukin comprises interleukin IL-6 and interleukin IL-8.
  6. 一种如权利要求1~5中任一项所述的标志物作为预测和监控新冠肺炎病程的分子标志物的应用。An application of the marker according to any one of claims 1 to 5 as a molecular marker for predicting and monitoring the course of novel coronavirus pneumonia.
  7. 根据权利要求6所述的应用,其特征在于,当血浆透明质酸<10ng/mL,预测新冠肺炎患者为轻型;当血浆透明质酸≥10ng/mL,预测新冠肺炎患者为普通型、重型或危重型。The application according to claim 6, wherein when plasma hyaluronic acid is less than 10ng/mL, it is predicted that patients with new coronary pneumonia are mild; when plasma hyaluronic acid is greater than or equal to 10 ng/mL, patients with new coronary pneumonia are predicted to be common, severe or Critical.
  8. 一种如权利要求1~5中任一项所述的标志物的检测试剂在制备预测和监控新冠肺炎病程的产品中的应用。An application of the marker detection reagent according to any one of claims 1 to 5 in the preparation of a product for predicting and monitoring the course of novel coronavirus pneumonia.
  9. 根据权利要求8所述的应用,其特征在于,所述产品通过检测新冠肺炎患者血浆中透明质酸水平从而预测患者属于轻症或重症。The application according to claim 8, wherein the product predicts whether the patient belongs to mild or severe disease by detecting the level of hyaluronic acid in the plasma of patients with new coronary pneumonia.
  10. 根据权利要求8或9所述的应用,其特征在于,当血浆透明质酸<10ng/mL, 预测新冠肺炎患者为轻型;当10ng/mL≤血浆透明质酸<48.43ng/mL,预测新冠肺炎患者为普通型;当血浆透明质酸≥48.43ng/mL,预测新冠肺炎患者为重型或危重型。The application according to claim 8 or 9, characterized in that, when plasma hyaluronic acid<10ng/mL, it is predicted that the patient with new coronary pneumonia is mild; when 10ng/mL≤plasma hyaluronic acid<48.43ng/mL, it is predicted that new coronary pneumonia The patient is common type; when the plasma hyaluronic acid is ≥48.43ng/mL, the patient with new coronary pneumonia is predicted to be severe or critical.
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