WO2021013077A1 - Protéine l1 de papillomavirus humain de type 58 chimérique - Google Patents

Protéine l1 de papillomavirus humain de type 58 chimérique Download PDF

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WO2021013077A1
WO2021013077A1 PCT/CN2020/102616 CN2020102616W WO2021013077A1 WO 2021013077 A1 WO2021013077 A1 WO 2021013077A1 CN 2020102616 W CN2020102616 W CN 2020102616W WO 2021013077 A1 WO2021013077 A1 WO 2021013077A1
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protein
hpv
hpv type
fragment
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PCT/CN2020/102616
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罗春霞
张伟
索晓燕
庞琳
胡萍
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神州细胞工程有限公司
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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/12—Viral antigens
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A61P31/20—Antivirals for DNA viruses
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • C07K14/01—DNA viruses
    • C07K14/025—Papovaviridae, e.g. papillomavirus, polyomavirus, SV40, BK virus, JC virus
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N7/00—Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof
    • C12N7/04—Inactivation or attenuation; Producing viral sub-units

Definitions

  • the present invention relates to human papillomavirus (HPV) L1 protein and polynucleotide encoding the protein, and also relates to HPV virus-like particles and a preparation method thereof.
  • HPV human papillomavirus
  • Papilloma virus belongs to the family of papillomaviruses (Papillomaviridae) and can cause papilloma in humans, cattle, dogs, rabbits, etc. Its member human papillomavirus (Human Papillomavirus, HPV) is a non-enveloped DNA virus.
  • the genome of the virus is a double-stranded closed-loop DNA with a size of about 7.2-8 kb and 8 open reading frames, which can be divided into three regions according to their functions: (1) early region (E), about 4.5 kb, encoding E1, E2 E4-E7 are 6 non-structural proteins related to virus replication, transcription and transformation; (2) Late region (L), about 2.5kb, encoding major capsid protein L1 and minor capsid protein L2; (3) long
  • the regulatory region (LCR) located between the end of the L region and the beginning of the E region, is about 800-900 bp in length, does not encode any protein, but has DNA replication and expression regulatory elements.
  • L1 and L2 proteins are synthesized in the middle and late stages of the HPV infection cycle.
  • the L1 protein is the main capsid protein and has a molecular weight of 55-60 kDa.
  • the L2 protein is a minor capsid protein.
  • 72 L1 protein pentamers constitute the outer shell of icosahedral HPV virus particles (45-55nm in diameter), which wraps the closed-loop double-stranded DNA.
  • the L2 protein is located inside the L1 protein (Structure of Small Virus-like Particles Assembled from the L1 Protein of Human Papillomavirus 16 Chen, X.S., R.L. Garcea, Mol. Cell. 5(3): 557-567, 2000).
  • the ORF of L1 protein is the most conserved gene in PV genome and can be used to identify new PV types. If the complete genome is cloned, and the DNA sequence of the L1 ORF differs by more than 10% from the closest known PV type, it is considered to have isolated a new PV type. Differences between 2% and 10% homology are defined as different subtypes, and differences less than 2% are defined as different variants of the same subtype (E.-M.de V Amsterdam et al./Virology 324(2004) 17- 27).
  • the newly synthesized L1 protein in the cytoplasm is transported to the terminally differentiated keratin cell nucleus. Together with the L2 protein, the copied HPV genomic DNA is packaged to form an infectious virus (Nelson, LM, et al. 2002. Nuclear import strategies of high risk HPV16 L1 major capsid protein. J.Biol.Chem.277:23958-23964). This indicates that the nuclear introduction of L1 protein plays a very important role in HPV infection and production.
  • the ability of the virus to enter the nucleus is determined by the nuclear localization signal (NLS) at the C-terminal of the HPV L1 protein.
  • NLS nuclear localization signal
  • a feature of the nuclear localization signal is that it is rich in basic amino acids (Garcia-Bustos, J., et al. 1991. Nuclear protein localization. Biochimica et al. Biophysica Acta 1071:83-101).
  • HPV-15 high-risk (HR) HPV types can cause cancer of the cervix, anus, penis, vagina, vulva, and oropharynx.
  • HR-HPV types 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68, 73 and 82) caused.
  • HPV-16 accounts for about 95% of HPV-positive oropharyngeal carcinomas (OPCs).
  • HPV-6 and HPV-11 cause most anogenital warts and respiratory papilloma, but they are rarely associated with cancer (Human Papillomavirus in Cervical Cancer and Oropharyngeal Cancer: One Cause, Two Diseases Tara A. Berman and John T. Schiller, PhD2 Cancer 2017; 123:2219-29).
  • VLP virus-like particle
  • VLP can induce neutralizing antibodies in vaccinated animals and protect laboratory animals from subsequent attacks by infectious viruses. Therefore, VLP seems to be an excellent candidate for papillomavirus vaccine (Structure of Small Virus-like Particles Assembled from the L1 Protein of Human Papillomavirus 16 Chen, XS, RL Garcea, Mol. Cell. 5(3): 557-567, 2000).
  • Glaxo's It is a bivalent recombinant HPV vaccine. It contains the HPV 16 type recombinant L1 protein and the HPV 18 type recombinant L1 protein obtained by the recombinant baculovirus expression vector system in the insect cells of Trichoplusia ni.
  • L1 protein self-assembles into virus-like particles, which are used to prevent cervical cancer caused by HPV types 16 and 18 in women aged 9-25, grade 2 or 3 cervical intraepithelial neoplasia and adenocarcinoma in situ, and grade 1 cervical cancer Intraepithelial neoplasia (carcinogenic) (https://www.fda.gov/downloads/BiologicsBloodVaccines/Vaccines/ApprovedProducts/UCM186981.pdf).
  • HPV 16 and 18 are the cause of about 70% of cervical cancers, and the remaining 20% of cases are attributed to types 31, 33, 45, 52, and 58. It can prevent 90% of cervical cancers (https://www.fda.gov/BiologicsBloodVaccines/Vaccines/ApprovedProducts/ucm426445.htm).
  • virus-like particles can be produced in large quantities.
  • the more common systems for producing virus-like particles are mainly divided into eukaryotic expression systems and prokaryotic expression systems.
  • eukaryotic expression systems include poxvirus expression system, insect baculovirus expression system, and yeast expression system.
  • the HPV L1 protein expressed in the eukaryotic expression system has less natural conformation damage and can assemble spontaneously to form virus-like particles, but the yield is low.
  • the prokaryotic expression system is mainly Escherichia coli expression system, with high yield but mostly in the form of inclusion bodies, which is not conducive to purification and the production process is complicated.
  • the present invention provides a chimeric human papillomavirus (HPV) type 58 L1 protein, comprising a. N-terminal fragment derived from HPV type 58 L1 protein from its N-terminal to C-terminal direction.
  • the terminal fragment maintains the immunogenicity of the HPV type 58 L1 protein; and b.
  • Other L1 protein expression and solubility are better; the chimeric HPV type 58 L1 protein has the immunogenicity of HPV type 58 L1 protein.
  • the present invention provides a HPV type 58 virus-like particle, which comprises a chimeric HPV type 58 L1 protein.
  • the present invention provides an immunogenic composition for preventing HPV-related diseases or infections, which comprises HPV type 58 virus-like particles and an adjuvant.
  • the present invention provides an isolated polynucleotide encoding a chimeric HPV type 58 L1 protein.
  • the present invention provides a vector comprising a polynucleotide encoding a chimeric HPV type 58 L1 protein.
  • the present invention provides a baculovirus comprising a polynucleotide encoding a chimeric HPV type 58 L1 protein.
  • the present invention provides a host cell comprising the polynucleotide, vector, or baculovirus as described above.
  • the present invention provides a method for preparing HPV type 58 virus-like particles, which includes culturing the host cell as described above to express the chimeric HPV type 58 L1 protein and assemble it into virus-like particles; and purification The HPV type 58 virus-like particles.
  • HPV 58 L1 33C L1 protein expression.
  • M Marker; L: cell lysate; E-S: supernatant collected after centrifugation of the lysate.
  • FIG. 3 Expression of HPV16L1 (1-474) with C-terminal truncation.
  • M Marker;
  • L cell lysate;
  • E-S supernatant collected after centrifugation of the lysate.
  • the present invention provides a chimeric human papillomavirus (HPV) type 58 L1 protein, from its N-terminal to C-terminal direction comprising: a. an N-terminal fragment derived from HPV type 58 L1 protein, said The N-terminal fragment maintains the immunogenicity of the HPV type 58 L1 protein; and b. The C-terminal fragment derived from the L1 protein of the second type papillomavirus, which has a comparison with other types Types of L1 protein expression and solubility are better; wherein the chimeric HPV type 58 L1 protein has the immunogenicity of HPV type 58 L1 protein.
  • HPV human papillomavirus
  • the N-terminal fragment is a fragment obtained by truncating the C-terminus of the natural sequence of HPV 58 L1 protein to any amino acid position in its ⁇ 5 region, and is at least 98% identical to it.
  • sexual fragment the C-terminal fragment is a fragment obtained by truncating the N-terminus of the natural sequence of the second type papillomavirus L1 protein to any amino acid position in its ⁇ 5 region, and the fragment is further mutated , Deletions and/or additions and functional variants.
  • the N-terminal fragment and the fragment obtained by truncating the C-terminal of the natural sequence of HPV 58 L1 protein to any amino acid position in its ⁇ 5 region have at least 98.5%, 99%, 99.5% or 100% identity.
  • the C-terminal fragment contains one or more nuclear localization sequences.
  • the L1 protein of the second type of papillomavirus is selected from HPV type 1, type 2, type 3, type 4, type 6, type 7, type 10, type 11, type 13, type 16.
  • the L1 protein of the second type of papillomavirus is selected from HPV type 16, type 28, type 33, type 59, or type 68 L1 protein;
  • the L1 protein of the second type of papillomavirus is selected from HPV type 33 or HPV type 59 L1 protein.
  • the L1 protein of the second type of papillomavirus is HPV type 33 L1 protein, and the C-terminal fragment is SEQ ID No: 2; or a fragment of m amino acids in length, preferably covering SEQ ID No: 2 is a fragment of amino acid at position 1-m; where m is an integer from 8-26.
  • the C-terminal fragment of HPV type 33 L1 protein has a nuclear localization sequence. In another embodiment, the C-terminal fragment of HPV type 33 L1 protein has two nuclear localization sequences. In some embodiments, the chimeric HPV type 58 L1 protein comprises one or more C-terminal fragments of HPV type 33 L1 protein. The C-terminal fragments of the multiple HPV type 33 L1 proteins may be the same or different. In one embodiment, the amino acid sequence (KR) of amino acid number 7-8 of SEQ ID No: 2 and the amino acid sequence of amino acid sequence number 20-23 (KRKK) are the nuclear localization sequence of the C-terminal fragment of HPV 33 type L1 protein .
  • the second type of papillomavirus L1 protein is HPV59 type L1 protein, and the C-terminal fragment is SEQ ID No: 13; or a fragment of n amino acids in length, preferably covering SEQ ID No: 13 is a fragment of amino acids 1-n; where n is an integer from 16 to 38.
  • the C-terminal fragment of HPV type 59 L1 protein has a nuclear localization sequence. In another embodiment, the C-terminal fragment of HPV type 59 L1 protein has two nuclear localization sequences. In some embodiments, the chimeric HPV type 58 L1 protein comprises one or more C-terminal fragments of HPV type 59 L1 protein. The C-terminal fragments of the multiple HPV type 59 L1 proteins may be the same or different. In one embodiment, the amino acid sequence (RKR) of amino acid number 14-16 of SEQ ID No: 13 and the amino acid sequence of amino acid sequence number 28-34 (KRVKRRK) are the nuclear localization sequence of the C-terminal fragment of HPV type 59 L1 protein .
  • the chimeric HPV type 58 L1 protein includes both the C-terminal fragment of HPV type 33 L1 protein and the C-terminal fragment of HPV type 59 L1 protein.
  • the N-terminal fragment and the fragment obtained by truncating the C-terminal of the sequence shown in SEQ ID No:1 to any amino acid position in its ⁇ 5 region have 98%, 98.5%, and 99% , 99.5% or 100% identity.
  • the C-terminus of the N-terminal fragment and the N-terminus of the C-terminal fragment are directly connected or connected via a linker.
  • the linker does not affect the immunogenicity of the N-terminal fragment, and does not affect the expression or solubility of the protein.
  • the N-terminal fragment and the C-terminal fragment are connected by a linker consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids.
  • the linker is an artificial sequence.
  • the linker is a sequence naturally occurring in the HPV L1 protein.
  • the linker may be a partial sequence of HPV type 58 L1 protein.
  • the linker may be a partial sequence of HPV type 33 L1 protein.
  • the linker may be a partial sequence of HPV type 59 L1 protein.
  • the following continuous amino acid sequence exists within the range of plus and minus 4 amino acid positions of the connection point: RKFL; preferably Ground, the following continuous amino acid sequence exists in the range of plus or minus 6 amino acid positions of the connection point: LGRKFL.
  • the chimeric HPV type 58 L1 protein has 98%, 98.5%, 99%, 99.5%, or 100% identity with SEQ ID No: 3.
  • the present invention provides a HPV type 58 virus-like particle, which comprises the chimeric HPV type 58 L1 protein as described above.
  • the HPV type 58 virus-like particle is an icosahedron composed of 72 pentamers of the chimeric HPV type 58 L1 protein.
  • HPV type 58 virus-like particles have correctly formed disulfide bonds and therefore have a good natural conformation.
  • HPV type 58 virus-like particles self-assemble in an in vivo expression system.
  • the present invention provides an immunogenic composition for preventing HPV-related diseases or infections, which comprises the aforementioned HPV type 58 virus-like particles and an adjuvant.
  • the prevention can be considered a treatment, and the two can be used interchangeably.
  • the above immunogenic composition is administered to a subject.
  • the subject is a human.
  • the present invention provides an isolated polynucleotide encoding the chimeric HPV type 58 L1 protein as described above.
  • the polynucleotide is a polynucleotide that has been codon optimized for different expression systems.
  • the polynucleotide is a polynucleotide that has been codon optimized for the insect baculovirus expression system.
  • the present invention provides an isolated polynucleotide having the sequence shown in SEQ ID No: 4.
  • the present invention provides a vector comprising the polynucleotide as described above.
  • the vector is a baculovirus vector.
  • the vector may be a transfer vector used in a baculovirus expression system.
  • the vector may be an expression vector used in a baculovirus expression system.
  • the vector may be a recombined vector used in a baculovirus expression system.
  • the present invention provides a baculovirus comprising the polynucleotide as described above.
  • the present invention provides a host cell comprising the polynucleotide, vector, or baculovirus as described above.
  • the host cell is an insect cell.
  • the insect cell is selected from Sf9 cell, Sf21 cell, Hi5 cell and S2 cell.
  • the present invention provides a method for preparing HPV type 58 virus-like particles as described above, which comprises: culturing the host cell as described above to express the chimeric HPV type 58 L1 protein and assemble it Into virus-like particles; and purifying the HPV 58 virus-like particles.
  • the host cell is an insect cell. In one embodiment, the host cell is a Hi5 cell. In one embodiment, the chimeric HPV type 58 L1 protein self-assembles into HPV type 58 virus-like particles in the host cell. In one embodiment, the chimeric HPV type 58 L1 protein self-assembles into HPV type 58 virus-like particles in the host cell, which has a two-dimensional structure consisting of 72 pentamers of the chimeric HPV type 58 L1 protein. Decahedron. In one embodiment, HPV type 58 virus-like particles have correctly formed disulfide bonds and thus have a good natural conformation.
  • the purification uses cation exchange chromatography. In one embodiment, strong cation exchange chromatography is used for purification. In another embodiment, the purification uses weak cation exchange chromatography. In one embodiment, the purification uses a combination of multiple cation exchange chromatography. In one embodiment, HS strong cation exchange chromatography is used for purification. In another embodiment, MMA ion exchange chromatography is used for purification. In another embodiment, HS-MMA two-step chromatography is used for purification.
  • the papillomavirus L1 protein expressed by the eukaryotic expression system can spontaneously assemble into virus-like particles, but has the disadvantage of low expression and difficult mass production.
  • the sequence of the L1 protein of each type of HPV can be conveniently obtained from https://www.uniprot.org.
  • Each type of HPV L1 can be derived from different strains, so its amino acid sequence has multiple versions, and any one version of the natural sequence can be used in the present invention.
  • a certain The sequence of the HPV L1 protein of a given type may be different from the sequence used in the examples, but this difference does not affect the judgment and conclusion of the inventor.
  • HPV16 L1 protein C The end truncation of 1-34 amino acids, preferably 26 amino acids, declares that the yield of VLP is increased many times, preferably at least 10 times, especially about 10 to 100 times.
  • HPV16 L1 the inventors tried to shorten the C-terminus of HPV type 16 L1 by 31 amino acids and named it HPV16 L1 (1-474).
  • its protein expression is high but the protein solubility is poor, and it is difficult to extract and purify (see comparative example).
  • the poor solubility of the protein caused by this truncation may be caused by the defect of the C-terminal nuclear localization sequence, and the present invention is not limited to this speculation.
  • the inventors found that the expression levels of HPV type 16 L1 protein, HPV type 28 L1 protein, HPV type 33 L1 protein, HPV type 59 L1 protein, and HPV type 68 L1 protein are compared with other types of L1 protein. The solubility is better.
  • the inventors replaced the C-terminus of the HPV type that is difficult to extract or low-expression with the C-terminus of the L1 protein with better expression and solubility.
  • the inventors constructed such a chimeric protein which contains the N-terminal fragment derived from the first type of papillomavirus L1 protein (such as HPV L1 protein) and the second type of papillae from the N-terminal to the C-terminal direction.
  • the C-terminal fragment of oncovirus L1 protein (such as HPV L1 protein).
  • the former provides the immunogenicity of the first type of papillomavirus (such as HPV), and the latter provides the characteristics of better expression and solubility.
  • the two can be connected directly or through a joint.
  • protein secondary structure prediction software that can be used for prediction includes but is not limited to:
  • the inventors determined the length of the N-terminal fragment of the L1 protein derived from the first type of HPV in the following manner: truncated the natural sequence of the L1 protein in its ⁇ 5 region and its vicinity, and kept the length from The sequence from the N-terminal to the C-terminal newly generated in the ⁇ 5 region. Such a truncated sequence can ensure that it has the immunogenicity of this type and can form a VLP.
  • the N-terminal fragment derived from the HPV L1 protein of the first type can be further modified to ensure that it has the immunogenicity of this type and can form a VLP.
  • the inventors determined the length of the C-terminal fragment derived from the second type of HPV L1 protein in the following manner.
  • the natural sequence of L1 protein was truncated in its ⁇ 5 region and its vicinity, and the newly generated N-terminal to C-terminal sequence from its ⁇ 5 region was retained. Such a truncated sequence does not have a main neutralizing epitope and does not interfere with the immunogenicity of the chimeric protein formed.
  • the C-terminal fragment derived from the second type of HPV L1 protein may be further mutated, deleted and/or added, preferably retaining at least one nuclear localization sequence.
  • Yang et al. predicted the nuclear localization sequence of 107 HPV subtypes (Yang et al. Predicting the nuclear localization signals of 107 types of HPV L1 proteins by bioinformatic analysis.Geno.Prot.Bioinfo.Vol. 4 No. 1 2006 by reference All are incorporated herein), the nuclear localization sequence of each type of HPV L1 protein can be easily determined by sequence analysis software commonly used in this field.
  • the ligation of the aforementioned N-terminal fragment and the C-terminal fragment occurs at the newly generated C-terminus of the former and the newly generated N-terminus of the latter. It can be directly connected or connected through a joint. Regarding the connection point as the origin, the N terminal side of the origin is negative, and the C terminal side is positive.
  • HPV type 45 some HPV type 45 strains have an additional 26 amino acids at the N-terminus of the L1 protein, while in other HPV type 45 strains There is no such additional 26 amino acids at the N-terminus of the L1 protein, so it is expressed as (478)+26.
  • HPV59 DLDQFPLGRKFLLQLGA (475) RPKPTIGPRKRAAPAPTSTPSPKRVKRR KSSRK, wherein, RKR KRVKRRK 484-486 and 498-504 is the nuclear localization sequence.
  • the inventors conveniently completed the C-terminal replacement of the L1 protein between the different types with the help of the sequence similarity of the ⁇ 5 region and its surrounding regions between multiple HPV types.
  • each type of HPV L1 protein has a tetrapeptide RKFL in a similar position, and a more favorable situation is a hexapeptide LGRKFL.
  • the inventor cleverly used this highly conserved sequence to design the connection point of the chimeric protein at any amino acid position of this oligopeptide.
  • the sequence from the N-terminus of the chimeric protein to RKFL or LGRKFL is the same as the sequence of the N-terminal fragment derived from the first type of HPV L1 protein, while on the other hand, it is from RKFL or LGRKFL to the chimeric protein.
  • the C-terminal end of the synthin has the same sequence as the C-terminal fragment derived from the second type of L1 protein.
  • the chimeric protein thus produced maintains a high degree of similarity with the natural HPV L1 protein, and it can be expected that it will perform well in the production and subsequent medical or preventive processes.
  • the N-terminal fragment derived from the first type of HPV L1 protein will extend more amino acids to the C-terminal.
  • Residues, or the C-terminal fragment derived from the HPV L1 protein of the second type extends more amino acid residues to the N-terminal, and it is also possible that the same or similar amino acids at the corresponding positions form the structure of the present invention Consistent chimeric protein.
  • the chimeric protein thus formed also falls into the present invention.
  • variants of the chimeric protein may be formed through mutation, deletion and/or addition of amino acid residues. These variants may have the immunogenicity of the first type of HPV L1 protein, can form VLPs, and have good yield and solubility.
  • the chimeric protein thus formed also falls into the present invention.
  • the expression systems commonly used for the production of virus-like particles are divided into eukaryotic expression systems and prokaryotic expression systems.
  • the papillomavirus L protein expressed by the eukaryotic expression system can spontaneously assemble into virus-like particles, but it has the disadvantage of low expression and difficult mass production.
  • the natural conformation of the papillomavirus L protein expressed by the prokaryotic expression system is often destroyed, and later in vitro processing is required to obtain virus-like particles, and the yield is low, making it difficult to industrialize.
  • the present invention transforms the C-terminus of the L protein of papillomavirus (such as human papillomavirus), for example, replacing it with HPV type 16 L1 protein, HPV type 28 L1 protein, HPV type 33 L1 protein, HPV type 59 L1 protein, or HPV 68
  • the C-terminal fragment in the type L1 protein can increase the expression and solubility of the papillomavirus L protein in an expression system (for example, host cells, such as insect cells). This can be used for large-scale production of vaccines such as HPV vaccines.
  • HPV type 16 L1 protein, HPV type 28 L1 protein, HPV type 33 L1 protein, HPV type 59 L1 protein, and HPV type 68 L1 protein are better in expression and solubility than other types of L1 protein, and found The increased protein expression and solubility depend on the C-terminal sequence of the HPV L1 protein. In the 107 type HPV L1 protein, most of them have a nuclear localization sequence at the C-terminal, and the C-terminal sequence has a certain similarity.
  • the expression level is very low, or the expression is insoluble, replace its C-terminal fragment with HPV type 16 L1 protein, HPV type 28 L1 protein, HPV type 33 L1 protein, HPV type 59 L1
  • the C-terminal fragment of the protein or HPV type 68 L1 protein makes it possible to soluble expression and subsequent purification of papilloma L protein, which is originally very low or insoluble. This can be used for the large-scale production of more valent vaccines (such as HPV vaccines), making it possible to prevent multiple papillomaviruses, especially HPV infections more comprehensively.
  • HPV 58 L1 protein has low expression in insect cells and poor solubility, which is not conducive to subsequent purification and vaccine production.
  • yeast cells because the disulfide bonds cannot be formed correctly, the virus-like particles assembled by HPV type 58 L1 protein lack a good conformation.
  • the expression level and solubility of the chimeric HPV type 58 L1 protein of the present invention in insect cells are greatly improved compared to the unmodified HPV type 58 L1 protein. It can be used for large-scale production of HPV 58 vaccine.
  • the chimeric HPV type 58 L1 protein can correctly form disulfide bonds in insect cells and assemble into HPV type 58 virus-like particles with good conformation. This can improve the immunogenicity of HPV 58 virus-like particles and produce a better immune response.
  • immunogenicity refers to the ability of a substance, such as a protein or polypeptide, to stimulate an immune response, that is, the ability to stimulate the production of antibodies, especially the production of body fluids or to stimulate a cell-mediated response.
  • antibody refers to an immunoglobulin molecule capable of binding an antigen.
  • Antibodies can be polyclonal mixtures or monoclonal.
  • the antibody may be a whole immunoglobulin derived from a natural source or a recombinant source or may be an immunoreactive part of a whole immunoglobulin.
  • Antibodies can exist in a variety of forms, including, for example, Fv, Fab', F(ab')2, and as a single chain.
  • antigenicity refers to the ability of a substance, such as a protein or polypeptide, to produce antibodies that specifically bind to it.
  • epitope includes any protein determinant capable of specifically binding to an antibody or T cell receptor.
  • Epitope determinants usually consist of chemically active surface groups of molecules (for example, amino acids or sugar side chains, or combinations thereof), and usually have specific three-dimensional structural characteristics and specific charge characteristics.
  • subtype or “type” are used interchangeably herein, and refer to a genetic variant of the viral antigen so that a subtype can be recognized by the immune system by distinguishing it from a different subtype.
  • HPV 16 can be distinguished from HPV 33 in immunology.
  • HPV L1 protein is used herein, and the terms “HPV” and "human papilloma virus” refer to non-enveloped double-stranded DNA viruses of the papillomavirus family. Their genomes are round and are about 8 kilobase pairs in size. Most HPV encode eight major proteins, six are located in the “early” region (E1-E2), and two are located in the “late” region (L1 (major capsid protein) and L2 (minor capsid protein)). More than 120 HPV types have been identified and they are numbered (for example, HPV-16, HPV-18, etc.).
  • HPV or "HPV virus” refers to the papillomavirus of the papillomavirus family. It is a non-enveloped DNA virus.
  • the viral genome is a double-stranded closed-loop DNA with a size of about 8kb. It can usually be divided into three regions: 1Early region (E), containing 6 open reading frames encoding E1, E2, E4 ⁇ E7 virus replication, transcription and transformation related non-structural proteins, and E3 and E8 open reading frames; 2Late region (L) contains codes The reading frame of the major capsid protein L1 and the minor capsid protein L2; 3Long regulatory region (LCR) does not encode any protein, but has the origin of replication and multiple transcription factor binding sites.
  • HPV L1 protein and HPV L2 protein refer to proteins encoded by the late region (L) of the HPV gene and synthesized late in the HPV infection cycle.
  • the L1 protein is the main capsid protein and has a molecular weight of 55-60 kDa.
  • L2 protein is the minor capsid protein.
  • 72 L1 pentamers constitute the outer shell of icosahedral HPV virus particles, which enclose the closed-loop double-stranded DNA microchromosomes.
  • the L2 protein is located inside the L1 protein.
  • virus-like particle is a hollow particle containing one or more structural proteins of a certain virus without viral nucleic acid.
  • HPV pseudovirus utilizes the characteristic of HPV VLP to wrap nucleic acid non-specifically, and is formed by wrapping free DNA or introducing foreign plasmids into VLP composed of HPV L1 and L2 expressed in cells. It is an ideal HPV neutralization experimental model in vitro.
  • Pseudovirus neutralization method is a method to evaluate the neutralizing activity of antibodies. After immunized animal serum is incubated with a certain amount of pseudovirus, the cells will be infected. The cells will increase with the increase of neutralizing antibodies in the serum. Decrease, there may be a linear negative correlation within a certain range, so the neutralizing activity of antibodies in serum can be evaluated by detecting changes in the number of expressing cells.
  • fragment thereof or “variant thereof” means that a part of the nucleotide or amino acid sequence according to the present invention is deleted, inserted and/or substituted.
  • the fragments or variants of the polypeptides provided by the present invention can trigger humoral and/or cellular immune responses in animals or humans.
  • chimeric means that polypeptides or nucleotide sequences derived from different parent molecules are linked together via amide bonds or 3', 5'-phosphodiester bonds, respectively. Preferably, they are not separated by additional linker sequences, but are directly adjacent to each other.
  • truncated means by removing one or more amino acids from the N and/or C-terminus of the polypeptide or deleting one or more amino acids within the polypeptide.
  • nuclear localization sequence is an amino acid sequence that can guide a protein into the nucleus.
  • two close basic residue clusters ie, nuclear localization sequence
  • nuclear localization sequence for example, one is KRKR, KRKK, KRKRK, KRKKRK, KRVKRRK, etc., and the other is KR, RKR, KRK, etc.
  • Spacer of 10-14 amino acids for example, one is KRKR, KRKK, KRKRK, KRKKRK, KRVKRRK, etc.
  • the above-mentioned basic residue cluster belongs to the nuclear localization sequence.
  • the nuclear localization sequence is a compact cluster of basic residues formed by arginine and/or lysine.
  • Nuclear localization sequences include, but are not limited to, examples of basic residue clusters as described above.
  • the term "functional variant” refers to a version of a polypeptide or protein that has been truncated, mutated, deleted, and/or added and still retains the desired activity or characteristics.
  • sequence identity between two polypeptide or nucleic acid sequences means the number of identical residues between the sequences as a percentage of the total number of residues, and is calculated based on the size of the smaller of the compared molecules.
  • sequences being compared are aligned in a way that produces the largest match between the sequences, and the gaps in the alignment (if any) are resolved by a specific algorithm.
  • Preferred computer program methods for determining the identity between two sequences include, but are not limited to, the GCG program package, including GAP, BLASTP, BLASTN, and FASTA (Altschul et al., 1990, J. Mol. Biol. 215: 403-410) .
  • the above program can be publicly obtained from the International Center for Biotechnology Information (NCBI) and other sources.
  • NCBI International Center for Biotechnology Information
  • Smith Waterman algorithm can also be used to determine identity.
  • Non-critical amino acids can be conservatively substituted without affecting the normal function of the protein.
  • Conservative substitution means replacing an amino acid with a chemically or functionally similar amino acid. It is well known in the art to provide conservative substitution tables for similar amino acids. For example, in some embodiments, the amino acid groups provided in Tables 1-3 are considered to be mutually conservative substitutions.
  • amino acid means twenty common naturally occurring amino acids.
  • Naturally occurring amino acids include alanine (Ala; A), arginine (Arg; R), asparagine (Asn; N), aspartic acid (Asp; D), cysteine (Cys; C ); glutamic acid (Glu; E), glutamine (Gln; Q), glycine (Gly; G), histidine (His; H), isoleucine (Ile; I), leucine ( Leu; L), lysine (Lys; K), methionine (Met; M), phenylalanine (Phe; F), proline (Pro; P), serine (Ser; S), threonine (Thr; T), tryptophan (Trp; W), tyrosine (Tyr; Y) and valine (Val; V).
  • Naturally occurring amino acids include alanine (Ala; A), arginine (Arg; R), asparagine (Asn; N), aspart
  • adjuvant refers to a compound or mixture that enhances the immune response.
  • the vaccine may contain adjuvants.
  • the adjuvant used in the present invention may include, but is not limited to, one or more of the following: mineral adjuvant compositions, oil-milk adjuvants, saponin adjuvant preparations, bacteria or microbial derivatives.
  • vector means a nucleic acid molecule capable of multiplying another nucleic acid to which it is linked.
  • the term includes a vector as a self-replicating nucleic acid structure and as a vector integrated into the genome of a host cell into which the vector has been introduced. Certain vectors are capable of directing the expression of nucleic acids operably linked by such vectors.
  • host cell means a cell into which exogenous nucleic acid has been introduced, and the progeny of such a cell.
  • Host cells include “transformants” (or “transformed cells”), “transfectants” (or “transfected cells”), or “infectants” (or “infected cells”), each of which includes primary transformation, transfection, or Infected cells and their descendants.
  • Such offspring may not be exactly the same as the parent cell in nucleic acid content, and may contain mutations.
  • the amount of administration is preferably a "prophylactically effective amount" (prevention can be regarded as a treatment herein, and the two are used interchangeably), which is sufficient to show a benefit to the individual.
  • Example 1 Construction of a chimeric gene where HPV58L1 C-terminal is replaced with HPV33L1 C-terminal
  • Thermo Fisher company [former Yingwei Jieji (Shanghai) Trading Co., Ltd.] to synthesize HPV58L1 gene, and the synthesized sequence has KpnI and XbaI restriction sites at both ends, and the sequence is shown in SEQ ID NO: 5.
  • the synthesized gene fragment was ligated with pcDNA3 vector (seller Thermo Fisher) through KpnI and XbaI restriction sites to obtain a plasmid pcDNA3-HPV58-L1 containing a nucleotide sequence encoding HPV58L1 1-498 amino acids.
  • the obtained pcDNA3-HPV58-L1 plasmid was subjected to double enzyme digestion with KpnI and XbaI to obtain a fragment of the HPV58L1 (1-498) gene. Then the fragment was ligated with the pFastBac TM 1 vector (seller Thermo Fisher) that was digested with KpnI and XbaI to obtain a bacmid vector containing the HPV58L1 (1-498) gene fragment, named pFB-HPV58L1.
  • Entrusted Thermo Fisher Company [former Yingwei Jieji (Shanghai) Trading Co., Ltd.] to synthesize HPV33L1 gene, and the synthetic sequence has KpnI and XbaI restriction sites at both ends, and the gene fragment sequence is shown in SEQ ID NO: 58.
  • the synthesized gene fragment was ligated with pcDNA3 vector (seller Thermo Fisher) through KpnI and XbaI restriction sites to obtain a plasmid pcDNA3-HPV33-L1 containing a nucleotide sequence encoding HPV33L1 and 1-499 amino acids.
  • the obtained pcDNA3-HPV33-L1 plasmid was digested with KpnI and XbaI to obtain the HPV33L1 (1-499) gene fragment. Then the fragment was ligated with the pFastBacTM1 vector (seller Thermo Fisher) double digested with KpnI and XbaI to obtain a bacmid vector containing the HPV33L1 (1-499) gene fragment, named pFB-HPV33L1.
  • This gene fragment includes a gene fragment encoding 1-473 amino acids of HPV58L1, 10 bases overlapping with the gene fragment of 474-499 amino acids of HPV33L1, and a KpnI restriction site (GGTAC ⁇ C) segment.
  • the amplified sequence is as SEQ ID No: 9 shows:
  • PCR amplification parameters pre-denaturation at 94°C for 5 min; denaturation at 98°C for 10 seconds, annealing at 69°C for 15 seconds, 72°C for 1kb/1min, and 30 cycles; extension at 72°C for 5 minutes; ending at 16°C.
  • primers F2 and R2 were used to amplify a gene fragment with a length of 101 bp.
  • the primer sequence F2 is shown in SEQ ID No: 10
  • R2 is shown in SEQ ID No: 11.
  • This gene fragment contains the 26 (474-499) amino acid gene fragment of HPV33L1 C-terminal, the 10bp base overlapping with the 1-473 amino acid C-terminal gene fragment of HPV58L1 and the XbaI (T ⁇ CTAGA) restriction site, amplified
  • the sequence is shown in SEQ ID No: 12.
  • PCR amplification parameters pre-denaturation at 94°C for 5 min; denaturation at 98°C for 10 seconds, annealing at 69°C for 15 seconds, 72°C for 1kb/1min, and 30 cycles; extension at 72°C for 5 minutes; ending at 16°C.
  • the splicing primers are F1 and R2 respectively, and the fragments amplified by the above primers (fragments amplified by F1 and R1, and fragments amplified by F2 and R2) are used as templates.
  • PCR splicing parameters 94°C pre-denaturation 5min; 98°C denaturation 10s, 52°C annealing 15s, 72°C 1kb/1min, for 5 cycles; 98°C denaturation 10s, 68°C annealing 15s, 72°C 1kb/1min, for 25 cycles Cycle; extend at 72°C for 5 min; end at 16°C.
  • SEQ ID NO: 4 encodes a nucleotide sequence consisting of amino acids 1-473 of HPV58L1 and 26 (474-499) amino acids at the C-terminus of HPV33L1, with KpnI and XbaI restriction sites at both ends (hereinafter referred to as splicing sequence).
  • the pFastBac TM 1 vector and the splicing sequence fragment were digested with KpnI+XbaI, and the splicing sequence was cloned into the pFastBac TM 1 vector to obtain the recombinant plasmid pFB-HPV58L1:33C. It is a chimeric gene in which HPV58L1 C-terminal is replaced with HPV33L1 C-terminal.
  • Example 2 HPV 58L1: 33C Recombinant Baculovirus Packaging
  • DH10Bac bacterial competent cells (Bac-to- The kit, purchased from Thermo Fisher), was cultured and amplified at 37°C, and streaked on a plate. White plaque was selected and amplified. After culturing overnight, the bacterial solution was collected and the recombinant bacmid DNA was extracted by alkaline lysis.
  • the virus supernatant is collected after the cells have obvious lesions, and the culture is generally 7-11 days. Collect the virus supernatant aseptically with a pipette, which is the HPV58L1:33C P1 generation virus seed. Use HPV58L1:33C P1 generation virus to infect SF9 cells at a ratio of 1:50 (V/V).
  • the infection density of SF9 cells is 2 ⁇ 10 6 cells/mL, cultured and expanded at 27°C for 3 days, and centrifuged at 1000g ⁇ 200g for 10min at room temperature ,
  • the collected virus supernatant is the P2 generation virus, which can be used for infection production.
  • the baculovirus containing the HPV 58L1:33C recombinant gene obtained in Example 2 was used to infect High Five cells, the infection ratio was 1:200 (V/V), and the cell pellet was collected by centrifugation at 1000g ⁇ 100g at room temperature, using PBS or MOPS buffer ( (pH 6.0-7.0, salt concentration 100 mM-1M) ultrasonically lyse the cell pellet, sonicate at low temperature for 3 minutes, centrifuge at a centrifugal force greater than 10,000 g for 10 minutes, collect the supernatant after centrifugation and detect by SDS-PAGE electrophoresis.
  • PBS or MOPS buffer (pH 6.0-7.0, salt concentration 100 mM-1M)
  • Lane 1 Marker (Marker is seven purified proteins with a molecular weight ranging from 14.4 to 116 kDa, and the manufacturer is Thermo Scientific); Lane 2: Cell lysate; Lane 3: Supernatant collected after centrifugation of the lysate.
  • HPV 58L1:33C L1 produced by this method has a protein yield of more than 100mg/L and a protein size of about 56KD, which can be used for large-scale production.
  • the HPV 58L1: 33C virus-like particle purification method is a two-step chromatography method, namely the HS-MMA method.
  • the supernatant collected in Example 3 is purified to obtain high-purity virus-like particles.
  • Medium volume medium volume 150mL, linear flow rate 30mL/min.
  • the column is first equilibrated with 5CV buffer and then loaded. After loading the sample, 5CV equilibration buffer and washing buffer were used to elute the contaminated proteins.
  • Elution conditions pH 6.2, elution salt concentration of 1.25 M sodium chloride, elution with 50 mM phosphate buffer containing 50 mM arginine hydrochloride.
  • MMA ion exchange medium produced by Shanghai Boglong Company.
  • Medium volume medium volume 150mL, linear flow rate 30mL/min.
  • Chromatography conditions balance buffer 50mM PB, 1.25M NaCl, pH 6.2.
  • the column is first equilibrated with 4CV equilibration buffer and then loaded. After loading the sample, wash the mixed protein with 5CV equilibration buffer, and then use the elution buffer to elute the target protein to collect the protein.
  • Elution conditions 100mM NaAC, 150mM NaCl, 0.01% Tween 80, pH 4.5.
  • Example 6 Evaluation of animal immunogenicity of HPV 58L1: 33C virus-like particles
  • HPV is difficult to culture in vitro and has strong host specificity, it is difficult to reproduce in organisms other than the human body, and there is a lack of suitable animal models. Therefore, it is necessary to establish a suitable and effective in vitro neutralization experimental model for the evaluation of vaccine immunity.
  • HPV pseudovirus is an ideal HPV in vitro neutralization experimental model: HPV VLP has the characteristic of non-specifically encapsulating nucleic acid, and the VLP composed of HPV L1 and L2 expressed in cells wraps free DNA or introduces foreign plasmid to form HPV pseudovirus.
  • the pseudovirus neutralization method was used to analyze the immunogenicity of animal serum samples after immunization.
  • the HPV58 virus-like particle samples can produce neutralizing antibodies against HPV58 after immunizing animals, which can neutralize HPV58 pseudoviruses.
  • the cells that can express GFP fluorescence will decrease with the increase of neutralizing antibodies in the serum. There may be a linear negative correlation within a certain range, so The neutralizing activity of antibodies in serum can be evaluated by detecting changes in the number of cells expressing GFP.
  • HPV 58L1 33C virus-like particles were adsorbed on aluminum phosphate adjuvant, and 200 ⁇ L was used to immunize mice after mixing.
  • the immunization dose per mouse was 0.15 ⁇ g, and 10 mice were immunized on day 0 and day 7 of the experiment.
  • the diluted samples were used to immunize the mice.
  • a blank serum control group was set up.
  • the mice’s eyeballs were taken for blood, and the serum was separated for pseudovirus neutralization titer detection.
  • mice serum After the mouse serum was inactivated at 56°C for 30 minutes, it was centrifuged at 6000 g, and the supernatant was taken for detection after 5 minutes. 4-8 hours before the detection, 293FT cells were plated in a 96-well plate at a density of 15000 cells/well and cultured in a carbon dioxide incubator at 37°C and 5% CO 2 . After immunization, the mouse serum and the blank control serum were serially diluted with neutralization medium and mixed with the HPV58 pseudovirus prepared in 6.1 at a volume ratio of 1:1.
  • HPV58 serum pseudovirus neutralization titer The detection results of HPV58 serum pseudovirus neutralization titer are shown in Table 4.
  • GMT Greenwich Mean Titer
  • HPV 58L1:33C virus-like particles prepared by the present invention have good immunogenicity, can produce high-titer neutralizing antibodies in animals, and can be used to prepare vaccines for preventing HPV infection.
  • HPV16L1(1-474) SEQ ID NO: 14
  • HPV16L1(1-474) SEQ ID NO: 14
  • the truncated HPV16L1(1-474) protein has high expression level but poor protein solubility, and it is difficult to extract and purify.
  • the specific expression and extraction results are shown in Figure 3.

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Abstract

La présente invention concerne une protéine L1 de papillomavirus humain de type 58 chimérique, un polynucléotide codant pour celle-ci, une particule de type viral de HPV de type 58 et un procédé de préparation associé. La protéine L1 de papillomavirus humain de type 58 chimérique comprend un fragment N-terminal dérivé d'une protéine L1 de HPV de type 58, le fragment N-terminal conservant l'immunogénicité de la protéine L1 de HPV de type 58 ; et un fragment C-terminal dérivé d'une protéine L1 d'un second type de papillomavirus ayant de meilleures caractéristiques d'expression et de solubilité par comparaison avec des protéines L1 d'autres types de papillomavirus. La protéine L1 de HPV de type 58 chimérique a l'immunogénicité de la protéine L1 de HPV de type 58. La protéine L1 de papillomavirus humain de type 58 chimérique a un niveau d'expression élevé et une solubilité élevée et peut être utilisée dans la production à grande échelle d'un vaccin.
PCT/CN2020/102616 2019-07-19 2020-07-17 Protéine l1 de papillomavirus humain de type 58 chimérique WO2021013077A1 (fr)

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