WO2020257524A1 - Uv-resistant biological devices and extracts and methods for producing and using the same - Google Patents

Uv-resistant biological devices and extracts and methods for producing and using the same Download PDF

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WO2020257524A1
WO2020257524A1 PCT/US2020/038536 US2020038536W WO2020257524A1 WO 2020257524 A1 WO2020257524 A1 WO 2020257524A1 US 2020038536 W US2020038536 W US 2020038536W WO 2020257524 A1 WO2020257524 A1 WO 2020257524A1
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gene
expresses
homology
seq
dna construct
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PCT/US2020/038536
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French (fr)
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Raul CUERO RENGIFO
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Bio Capital Holdings, LLC
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    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/80Vectors or expression systems specially adapted for eukaryotic hosts for fungi
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    • A61K8/66Enzymes
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61QSPECIFIC USE OF COSMETICS OR SIMILAR TOILETRY PREPARATIONS
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    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
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Definitions

  • sequence identifier number (SEQ ID NO).
  • SEQ ID NO corresponds numerically to the sequence identifiers ⁇ 400>1, ⁇ 400>2, etc.
  • sequence Listing in written computer readable format (CRF), is incorporated by reference in its entirety.
  • Exposure to UV radiation causes harmful effects in a wide variety of things, both living and non-living. For example, exposure of human skin to UV radiation can cause severe sunburn and skin cancer and exposure of beneficial microorganisms to UV radiation can kill them. UV radiation can also cause materials to degrade prematurely and thus suffer mechanical failure or otherwise become unable to serve their intended purposes.
  • UV radiation can generally be prevented or lessened through the simple step of using a compound or composition to absorb all or a portion of UV radiation before it reaches the item it may harm.
  • chemicals in sunscreen absorb a portion of the UV radiation that would normally reach the skin and, as a result, help protect the skin from sunburn and skin cancer.
  • the biological devices include microbial cells transformed with a DNA construct containing genes for producing UV-resistant proteins such as, for example, phosphoribulokinase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, and TonB. Methods for producing and using the devices are also described herein. Finally, compositions and methods for using the devices and extracts to reduce or prevent UV-induced damage or exposure to materials, items, plants, and human and animal subjects are described herein.
  • Figures 1 A and IB show, respectively, linear and circular schematics of a constructed pYES2 plasmid showing the direction, placement, and size of genetic parts used in one aspect of an exemplary DNA device described herein.
  • Figures 2A and 2B show, respectively, linear and circular schematics of a second constructed pYES2 plasmid showing the direction, placement, and size of genetic parts used in another aspect of an exemplary DNA device described herein.
  • “Optional” or“optionally” means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where the event or circumstance occurs and instances where it does not.
  • the phrase“optionally includes a gene for a selective marker” means that the gene may or may not be present.
  • the term“about” is used to provide flexibility to a numerical range endpoint by providing that a given value may be“a little above” or“a little below” the endpoint without affecting the desired result.
  • each of the combinations A-E, A-F, B-D, B-E, B-F, C-D, C-E, and C-F are specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D.
  • any subset or combination of these is also specifically contemplated and disclosed.
  • the sub-group of A-E, B-F, and C-E is specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D.
  • This concept applies to all aspects of this disclosure including, but not limited to, steps in methods of making and using the disclosed compositions.
  • steps in methods of making and using the disclosed compositions are also contemplated and should be considered disclosed.
  • references in the specification and concluding claims to parts by weight of a particular element or component in a composition or article denote the weight relationship between the element or component and any other elements or components in the composition or article for which a part by weight is expressed.
  • X and Y are present at a weight ratio of 2:5, and are present in such ratio regardless of whether additional components are contained in the compound.
  • a weight percent of a component is based on the total weight of the formulation or composition in which the component is included.
  • Heterologous genes and proteins are genes and proteins that have been experimentally put into a cell that are not normally expressed by that cell.
  • a heterologous gene may be cloned or derived from a different cell type or species than the recipient cell or organism. Heterologous genes may be introduced into cells by transduction or transformation.
  • An“isolated” nucleic acid is one that has been separated from other nucleic acid molecules and/or cellular material (peptides, proteins, lipids, saccharides, and the like) normally present in the natural source of the nucleic acid.
  • An“isolated” nucleic acid may optionally be free of the flanking sequences found on either side of the nucleic acid as it naturally occurs.
  • An isolated nucleic acid can be naturally occurring, can be chemically synthesized, or can be a cDNA molecule (i.e., is synthesized from an mRNA using reverse transcriptase and DNA polymerase enzymes).
  • Transformation refers to a process for introducing heterologous DNA into a host cell. Transformation can occur under natural conditions or may be induced using various methods known in the art. Many methods for transformation are known in the art and the skilled practitioner will know how to choose the best transformation method based on the types of cells being transformed. Methods for transformation include, for example, viral infection, electroporation, lipofection, chemical transformation, and particle bombardment. Cells may be stably transformed (i.e., the heterologous DNA is capable of replicating as an autonomous plasmid or as part of the host chromosome) or may be transiently transformed (i.e., the heterologous DNA is expressed only for a limited period of time).
  • Competent cells refers to microbial cells capable of taking up heterologous DNA. Competent cells can be purchased from a commercial source, or cells may be made competent using procedures known in the art. Exemplary procedures for producing competent cells are provided in the Examples.
  • the biological devices described herein can be used to produce UV-protective proteins, extracts, and other components.
  • the devices are generally composed of host cells, where the host cells are transformed with a DNA construct described herein that promotes the expression of proteins involved in UV resistance responses. It is understood that one way to define the variants and derivatives of the genetic components and DNA constructs described herein is through defining the variants and derivatives in terms of homology/identity to specific known sequences. Those of skill in the art readily understand how to determine the homology of two nucleic acids. For example, the homology can be calculated after aligning two sequences so that the homology is at its highest level.
  • “conservative” mutations are mutations that result in an amino acid change in the protein produced from a sequence of DNA.
  • the new amino acid has similar properties as the wild type amino acid and generally does not drastically change the function or folding of the protein (e.g., switching isoleucine for valine is a conservative mutation since both are small, branched, hydrophobic amino acids).
  • conservative mutations and homology can be combined together in any combination, such as embodiments that have at least 70%, 75%, 80%, 85%, 90%, 95%, or 99% homology to a particular sequence wherein the variants are conservative mutations. It is understood that any of the sequences described herein can be a variant or derivative having the homology values listed above.
  • the separate elements of the DNA constructs disclosed herein have at least 90% homology with the sequences disclosed herein. In another aspect, the separate elements have at least 95% homology or at least 99% homology with the sequences disclosed herein.
  • a database such as, for example, GenBank, can be used to determine the sequences of genes and/or regulatory regions of interest, the species from which these elements originate, and related homologous sequences.
  • the DNA construct includes the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
  • the DNA construct includes the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
  • the DNA construct described herein can promote the expression of UV-resistant proteins.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
  • the regulatory sequence is already incorporated into a vector such as, for example, a plasmid, prior to genetic manipulation of the vector.
  • the regulatory sequence can be incorporated into the vector through the use of restriction enzymes or any other technique known in the art.
  • the regulatory sequence is a promoter.
  • the term“promoter” refers to a DNA sequence capable of controlling the expression of a coding sequence.
  • the coding sequence to be controlled is located 3' to the promoter.
  • the promoter is derived from a native gene.
  • the promoter is composed of multiple elements derived from different genes and/or promoters.
  • a promoter can be assembled from elements found in nature, from artificial and/or synthetic elements, or from a combination thereof. It is understood by those skilled in the art that different promoters can direct the expression of a gene in different tissues or cell types, at different stages of development, in response to different environmental or physiological conditions, and/or in different species.
  • the promoter functions as a switch to activate the expression of a gene.
  • the promoter is“constitutive.”
  • a constitutive promoter is a promoter that causes a gene to be expressed in most cell types at most times.
  • the promoter is“regulated.”
  • a regulated promoter is a promoter that becomes active in response to a specific stimulus.
  • a promoter may be regulated chemically, for example, in response to the presence of a particular metabolite (e.g., lactose or tryptophan), a metal ion, a molecule secreted by a pathogen, or the like.
  • a promoter may also be regulated physically, for example, in response to heat, cold, water stress, salt stress, oxygen concentration, illumination (including UV exposure), wounding, or the like.
  • Promoters that are useful to drive expression of the nucleotide sequences described herein are numerous and familiar to those skilled in the art. Suitable promoters include, but are not limited to, the following: T3 promoter, T7 promoter, iron promoter, and GAL1 promoter. Variants of these promoters are also contemplated. In another aspect, several promoters, either the same or different, can appear in the same device. The skilled artisan will be able to use site-directed mutagenesis and/or other mutagenesis techniques to modify the promoters to promote more efficient function. The promoter can be positioned, for example, from 10-100 nucleotides away from a ribosomal binding site.
  • the promoter is positioned before the gene that expresses phosphoribulokmase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, TonB, or any combination thereof.
  • the promoter is a GAL1 promoter.
  • the GAL1 promoter is native to the plasmid used to create the vector.
  • a GAL1 promoter is positioned before the gene that expresses phosphoribulokinase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, TonB, or any combination thereof.
  • the promoter is a GAL1 promoter obtained from or native to the pYES2 plasmid.
  • the promoter is an iron promoter and is positioned before the gene that expresses iron oxidase.
  • the regulatory sequence is a terminator or stop sequence.
  • a terminator is a sequence of DNA that marks the end of a gene or operon to be transcribed.
  • the terminator is an intrinsic terminator or a Rho-dependent terminator.
  • an '‘intrinsic terminator” is a sequence wherein a hairpin structure can form in the nascent transcript and wherein the hairpin disrupts the mRNA/DNA/RNA polymerase complex.
  • a “Rho-dependent” transcription terminator requires a Rho factor protein complex to disrupt the mRNA/DNA/RNA polymerase complex.
  • the terminator is a CYC1 terminator.
  • multiple terminators can be included in the same DNA construct.
  • the regulatory sequence includes both a promoter and a terminator or stop sequence.
  • the regulatory sequence can include multiple promoters or terminators.
  • Other regulatory elements, such as enhancers, are also contemplated. Enhancers may be located from about 1 to about 2,000 nucleotides in the 5' direction from the start codon of the DNA to be transcribed, or may be located 3' to the DNA to be transcribed. Enhancers may be “cis-acting,” that is, located on the same molecule of DNA as the gene whose expression they affect.
  • the DNA construct can include a gene that expresses a reporter protein.
  • the selection of the reporter protein can vary.
  • the reporter protein can be a yellow fluorescent protein, a red fluorescent protein, a green fluorescent protein, or a cyan fluorescent protein.
  • the amount of fluorescence that is produced by the biological device can be correlated to the amount of DNA incorporated into the host cells.
  • the fluorescence produced by the device can be detected and quantified using techniques known in the art. For example, spectrofluorometers are typically used to measure fluorescence.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homolog ) ⁇ thereto, (4) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (5) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses a heat shock protein having SEQ ID NO.
  • CYC1 terminator a CYC1 terminator
  • GAL1 promoter a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto
  • a CYC1 terminator (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology' thereto, (14) a CYC1 terminator,
  • an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and
  • a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto Figs. 1A and IB show linear and circular schematics of one embodiment of such a DNA construct.
  • the DNA construct is SEQ ID NO. 8 or has at least 70%, 75%, 80%, 85%, 90%, or 95% homology thereto.
  • the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses TonB having SEQ ID NO.
  • a CYC1 terminator 9 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology' thereto, (11) a CYC1 terminator,
  • a GAL1 promoter (13) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (14) a CYC1 terminator, (15) a GAL1 promoter, (16) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (17) a CYC1 terminator, (18) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (19) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
  • Figs. 2A and 2B show linear and circular schematics of one embodiment of such a DNA construct.
  • the DNA construct is SEQ ID NO. 10 or has at least 70%, 75%, 80%, 85%, 90%, or 95% homology thereto.
  • the DNA construct described herein can be part of a vector.
  • the vector is a plasmid, a phagemid, a cosmid, a yeast artificial chromosome, a bacterial artificial chromosome, a virus, a phage, or a transposon.
  • Plasmid vectors containing replicon and control sequences that are derived from species compatible with the host cell are used in connection with these hosts.
  • Vectors capable of high levels of expression of recombinant genes and proteins are well known in the art.
  • the vector ordinarily carries a replication origin as well as marking sequences that are capable of providing phenotypic selection in transformed cells.
  • Plasmid vectors useful for the transformation of a variety of host cells are well known and are commercially available.
  • Such vectors include, but are not limited to, pWLneo, pSV2CAT, pOG44, pXTl, pSG, pSVK3, pBSK, pBR322, pYES, pYES2, pBSKII, and pUC vectors.
  • Plasmids are double-stranded, autonomously-replicating, genetic elements that are not integrated into host cell chromosomes. Further, these genetic elements are usually not part of the host cell’s central metabolism. In bacteria, plasmids may range from 1 kilobase (kb) to over 200 kb. Plasmids can be engineered to encode a number of useful traits including the production of secondary metabolites, antibiotic resistance, the production of useful proteins, degradation of complex molecules and/or environmental toxins, and others. Plasmids have been the subject of much research in the field of genetic engineering, as plasmids are convenient expression vectors for foreign DNA in, for example, microorganisms.
  • Plasmids generally contain regulatory elements such as promoters and terminators and also usually have independent replication origins. Ideally, plasmids will be present in multiple copies per host cell and will contain selectable markers (such as genes for antibiotic resistance) to allow the ordinarily skilled artisan to select host cells that have been successfully transfected with the plasmids (for example, by culturing the host cells in a medium containing the antibiotic).
  • selectable markers such as genes for antibiotic resistance
  • the vector encodes a selection marker.
  • the selection marker is a gene that confers resistance to an antibiotic.
  • the antibiotic may be included in the culture medium. Cells that have not been successfully transformed cannot survive in the presence of the antibiotic; only cells containing the vector that confers antibiotic resistance can survive. Optionally, only cells containing the vector to be expressed will be cultured, as this will result in the highest production efficiency of the desired gene products (e.g., proteins having a UV-protective effect). Cells that do not contain the vector would otherwise compete with transformed cells for resources.
  • the antibiotic is tetracycline, neomycin, kanamycin, ampicillin, hygromycin, chloramphenicol, amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazid, methicillin, oxacillin, vancomycin, streptomycin, quinolines, rifampin, rifampicin, sulfonamides, cephalothin, erythromycin, gentamycin, penicillin, other commonly-used antibiotics, or a combination thereof.
  • the plasmid when the vector is a plasmid, can also contain a multiple cloning site or polylinker.
  • the polylinker contains recognition sites for multiple restriction enzymes.
  • the polylinker can contain up to 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more than 20 recognition sites for restriction enzymes. Further, restriction sites may be added, disabled, or removed as required, using techniques known in the art.
  • the plasmid contains restriction sites for any known restriction enzyme such as, for example, Hindlll, Kpnl, Sad, BamHI, BstXI, EcoRI, BsaBI, Notl, Xhol, Sphl, Sbal, Apal, Sail, Clal, EcoRV, Pstl, Smal, Xmal, Spel, Eagl, SacII, or any combination thereof.
  • the plasmid can contain more than one recognition site for the same restriction enzyme.
  • the restriction enzyme can cleave DNA at a palindromic or an asymmetrical restriction site. In a further aspect, the restriction enzyme cleaves DNA to leave blunt ends; in an alternative aspect, the restriction enzyme cleaves DNA to leave“sticky” or overhanging ends. In another aspect, the enzyme can cleave DNA a distance of from 20 bases to over 1000 bases away from the restriction site.
  • restriction enzymes are commercially available and their recognition sequences, as well as instructions for use (e.g., amount of DNA needed, precise volumes of reagents, purification techniques, as well as information about salt concentration, pH, optimum temperature, incubation time, and the like) are made available by commercial enzyme suppliers.
  • a plasmid with a polylinker containing one or more restriction sites can be digested with one restriction enzyme and a nucleotide sequence of interest can be ligated into the plasmid using a commercially available DNA ligase enzyme.
  • DNA ligase enzyme Several such enzymes are available, often as kits containing all reagents and instructions required for use.
  • a plasmid with a polylinker containing two or more restriction sites can be simultaneously digested with two restriction enzymes and a nucleotide sequence of interest can be ligated into the plasmid using a DNA ligase enzyme.
  • RNA synthesis from a DNA template proceeds from 5' to 3', often starting just after a promoter, the order and direction of elements inserted into a plasmid is especially important. If a plasmid is to be simultaneously digested with multiple restriction enzymes, these enzymes must be compatible in terms of buffer, salt concentration, and other incubation parameters.
  • a plasmid that has been digested with a restriction enzyme is treated with an alkaline phosphatase enzyme to remove 5' terminal phosphate groups. This prevents self-ligation of the plasmid and thus facilitates ligation of heterologous nucleic acid fragments into the plasmid.
  • the nucleic acids used in the DNA constructs described herein can be amplified using the polymerase chain reaction (PCR) prior to being ligated into a plasmid or other vector.
  • PCR polymerase chain reaction
  • primers or short, chemically-synthesized oligonucleotides that are complementary to regions on each respective strand flanking the DNA or nucleotide sequence to be amplified.
  • primers should be designed to provide for efficient and faithful replication of the target nucleic acids.
  • primers Two primers are required for the amplification of each gene, one for the sense strand (that is, the strand containing the gene of interest) and one for the antisense strand (that is, the strand complementary to the gene of interest). Pairs of primers should have similar melting temperatures that are close to the PCR reaction’s annealing temperature. In order to facilitate the PCR reaction, the following features should be avoided in primers: mononucleotide repeats, complementarity with other primers in the mixture, self-complementarity, and internal hairpins and/or loops. Methods of primer design are known in the art; additionally, computer programs exist that can assist the ordinarily skilled practitioner with primer design. Primers can optionally incorporate restriction enzyme recognition sites at their 5' ends to assist in later ligation into plasmids or other vectors.
  • PCR can be carried out using purified DNA, unpurified DNA that has been integrated into a vector, or unpurified genomic DNA.
  • the process for amplifying target DNA using PCR consists of introducing an excess of two primers having the characteristics described above to a mixture containing the sequence to be amplified, followed by a series of thermal cycles in the presence of a heat-tolerant or thermophilic DNA polymerase, such as, for example, any of Taq, Pfu, Pwo, Tfl, rTth, Tli, or Tma polymerases.
  • a heat-tolerant or thermophilic DNA polymerase such as, for example, any of Taq, Pfu, Pwo, Tfl, rTth, Tli, or Tma polymerases.
  • a PCR“cycle” involves denaturation of the DNA through heating, followed by annealing of the primers to the target DNA, followed by extension of the primers using the thermophilic DNA polymerase and a supply of deoxynucleotide triphosphates (i.e., dCTP, dATP, dGTP, and TTP), along with buffers, salts, and other reagents as needed.
  • the DNA segments created by primer extension during the PCR process can serve as templates for additional PCR cycles. Many PCR cycles can be performed to generate a large concentration of target DNA or gene.
  • PCR can optionally be performed in a device or machine with programmable temperature cycles for denaturation, annealing, and extension steps.
  • PCR can be performed on multiple genes simultaneously in the same reaction vessel or microcentrifuge tube since the primers chosen will be specific to selected genes.
  • PCR products can be purified by techniques known in the art such as, for example, gel electrophoresis followed by extraction from the gel using commercial kits and reagents.
  • the vector can include an origin of replication, allowing it to use the host cell’s replication machinery to create copies of itself.
  • operably linked refers to the association of nucleic acid sequences on a single nucleic acid fragment so that the function of one affects the function of another. For example, if sequences for multiple genes are inserted into a single plasmid, their expression may be operably linked. Alternatively, a promoter is said to be operably linked with a coding sequence when it is capable of affecting the expression of the coding sequence.
  • expression refers to transcription and/or accumulation of an mRNA derived from a gene or DNA fragment. Expression may also be used to refer to translation of mRNA into a peptide, polypeptide, or protein.
  • PRK Phosphoribulokinase
  • PRK is an enzyme essential to photosynthesis.
  • PRK catalyzes phosphorylation of ribulose 5 -phosphate into ribulose 1,5-bisphosphate.
  • the DNA constructs disclosed herein include a gene that expresses PRK.
  • the gene that expresses PRK is isolated from a bacterium, a cyanobacterium, an amoeboid organism, or another microorganism.
  • the microorganism is a species from one or more of the following genera: Acidithiobacillus, Pseudanabaena, Nitrosomonas, Prochlorococcus, Paulinella, Halorhodospira, Sulfurifemla, Thioalkalivibrio, Halothiobacillus, Sedimenticola, Methylocaldium, Callionella, Thioflavicoccus, Ectothiorhodospira, Glaciecola, Synechococcus, Acidihalobacter, Sulfuricella, Sideroxydans, Thiolapillus, Allochromatium, or another microbial genus.
  • the gene that expresses PRK has SEQ ID NO. 1 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
  • sequences expressing phosphoribulokinase or related or homologous genes can be identified in a database such as, for example, GenBank.
  • the gene that expresses phosphoribulokinase is isolated from Acidithiobacillus ferroxidans ATCC 23270 (GI number CP001219.1) and produces a protein that can be identified by the GI number ACK78673.1 in the GenBank database.
  • sequences useful herein include those with the GI numbers listed in Table 1 :
  • Actin is a protein found in almost all eukaryotic cells and functions in both structural roles (e.g., in the cytoskeleton) and functional roles (e.g, as part of the apparatus that causes muscle cells to contract). Numerous forms of actin have been identified. As an example, a-actin is a form of actin that is found in the contractile apparatus of muscle cells. In one aspect, the DNA constructs disclosed herein include a gene that expresses a-actin.
  • the gene that expresses a-actin is isolated from a fish such as, for example, a coelacanth, a common carp, a Sinocyclocheilus species, a pupfish, a Nothobranchius species, a char, a swordtail, a Misgurnus species, a barramundi, a Poecilia species, a damselfish, a rainbow trout, a Maylandia species, a clownfish, a piranha, a zebrafish, or an Atlantic salmon.
  • the gene that expresses a-actin is isolated from an amphibian such as, for example, the African clawed frog.
  • the gene that expresses a-actin is isolated from an invertebrate such as, for example, a rotifer.
  • the gene that expresses a-actin is isolated from a mammal such as, for example, a human.
  • the gene that expresses a-actin has SEQ ID NO. 2 or at least 70% homology thereto, at least 75% homolog ⁇ 7 thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
  • sequences expressing a-actin or related or homologous genes can be identified in a database such as, for example, GenBank.
  • the gene that expresses a-actin is isolated from Homo sapiens (GI number J00068.1) and produces a protein that can be identified by the GI number AAB59376.1 in the GenBank database.
  • sequences useful herein include those with the GI numbers listed in Table 2:
  • the gene that expresses a heat shock protein is isolated from yeast.
  • the yeast species is, for example, Saccharomyces cerevisiae.
  • the S. cerevisiae is a strain of yeast such as, for example, S288C, ySR127, YJM1355, YJM453, YJM1202, YJM326, YJM1526, YJM470, YJM456, YJM1387,
  • the gene that expresses a heat shock protein is HSP70 and has SEQ ID NO. 3 or at least 70% homology thereof, at least 75% homology thereof, at least 80% homology thereof, at least 85% homology thereof, at least 90% homology thereof, or at least 95% homology thereof.
  • the gene that expresses a heat shock protein is isolated from Saccharomyces cerevisiae and can be found in GenBank with accession number XI 3713.
  • sequences expressing heat shock proteins or related or homologous genes can be identified in a database such as, for example, GenBank.
  • sequences useful herein include those with the GI numbers listed in Table 3.
  • RuBisCO is a an enzyme involved in the fixation of atmospheric carbon by plants. RuBisCO catalyzes the carboxylation of ribulose 1,5-bisphosphate and includes two types of subunits, a large chain and a small chain.
  • the DNA constmcts disclosed herein include a gene that expresses a RuBisCO large subunit.
  • the gene that expresses a RuBisCO large subunit is isolated from the chloroplasts (plastids) of an alga or marine or freshwater microorganism.
  • the gene that expresses a RuBisCO large subunit is isolated from one of the following organisms: Guillardia theta , a Storeatula species, a Rhodomonas species, a Teleaulax species, Hanusia phi , a Cryptomonas species, a Xanthonema species, a Botrydium species, a Bumileria species, an Ophiocytium species, or another marine or freshwater alga or microorganism.
  • the gene that expresses RuBisCO large subunit has SEQ ID NO.
  • sequences expressing the RuBisCO large subunit or related or homologous genes can be identified in a database such as, for example, GenBank.
  • the gene that expresses RuBisCO large subunit is isolated from Acidithiobacillus ferroxidans (GI number 226736654) and produces a protein that can be identified by the accession number P0C916.1 in the UmProt database.
  • sequences useful herein include those with the GI numbers listed in Table 4:
  • a luciferase is an oxidative enzyme that produces bioluminescence.
  • luciferase genes are found already incorporated in a variety of vectors used in biotechnology.
  • the DNA constructs disclosed herein can include a gene that expresses a luciferase.
  • the gene that expresses luciferase has SEQ ID NO. 5 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
  • sequences expressing luciferase or related or homologous genes can be identified in a database such as, for example, GenBank.
  • GenBank the gene that expresses luciferase (GI number MG687277.1) is already present in many cloning vectors and produces a protein that can be identified by the GI number AWK49539.1 in the GenBank database.
  • sequences useful herein include those with the GI numbers listed in Table 5:
  • the gene that expresses iron oxidase is isolated from a yeast such as, for example, Komagataella phaffli (also known as Pichia pastoris).
  • the gene that expresses iron oxidase is isolated from a bacterium of the Acidithiobacillus genus such as, for example, A. ferrivorans or ferrooxidans .
  • the gene that expresses iron oxidase is isolated from an insect such as a parasitic wasp or a fruit fly (e.g., Drosophila species D. virilis, D. serrata, D. miranda, D. pseudoobscura, D. willistoni, D. mojavensis, D.
  • the gene that expresses iron oxidase is isolated from an Apicomplexan parasite such as, for example, Eimeria necatrix. E. mitis, or E. maxima
  • the gene that expresses iron oxidase is isolated from a fungus.
  • the gene that expresses iron oxidase has SEQ ID NO.
  • the gene that expresses iron oxidase is a longer sequence that incorporates SEQ ID NO. 10.
  • the gene that expresses iron oxidase can be isolated from Acidithiobacillus ferrivorans and can be found in GenBank with accession number AEM49324.1.
  • sequences expressing iron oxidase or related or homologous genes can be identified in a database such as, for example, GenBank.
  • sequences useful herein include those with the GI numbers listed in Table 6.
  • the gene that expresses TonB is isolated from a bacterium.
  • the bacterium is a Pseudomonas species such as, for example, P. entomophila, P. sp. CCOS191, P. putida, P. mosselii, P. sp. DRA525, P. sp. FGI182, P. sp. JY-Q, P. plecoglossicida, P. sp. VLB 120, P. fulva, P. sp. URM017WK12:I11, P. parafulva, P. syringae, P. frederiksbergensis, P.
  • the gene that expresses TonB has SEQ ID NO. 9 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
  • the gene that expresses TonB is isolated from P. entomophila and can be found in GenBank with GI number CT573326.1
  • sequences expressing TonB or related or homologous genes can be identified in a database such as, for example, GenBank.
  • sequences useful herein include those with the GI numbers listed in Table 7:
  • a“biological device” is formed when a microbial cell is transfected with the DNA construct described herein.
  • the biological devices are generally composed of microbial host cells, where the host cells are transformed with a DNA construct described herein.
  • the DNA construct is carried by the expression vector into the cell and is separate from the host cell’s genome. In another aspect, the DNA construct is incorporated into the host cell’s genome. In still another aspect, incorporation of the DNA construct into the host cell enables the host cell to produce UV-protective proteins.
  • the host cells as referred to herein include their progeny, which are any and all subsequent generations formed by cell division. It is understood that not all progeny may be identical due to deliberate or inadvertent mutations.
  • a host cell may be“transfected” or“transformed,” which refers to a process by which exogenous nucleic acid is transferred or introduced into the host cell.
  • a transformed cell includes the primary subject cell and its progeny.
  • the host cells can be naturally- occurring cells or“recombinant” cells. Recombinant cells are distinguishable from naturally-occurring cells in that naturally-occurring cells do not contain heterologous nucleic acid sequences introduced using molecular biology techniques.
  • the host cell is a prokaryotic cell such as, for example, Escherichia coli.
  • the host cell is a yeast such as, for example, Saccharomyces cerevisiae.
  • Host cells transformed with the DNA construct described herein are referred to as biological devices.
  • the DNA construct is first delivered into the host cell. This delivery can be accomplished in vitro using well-developed laboratory procedures for transforming cell lines. Transformation of bacterial cell lines can be achieved using a variety of techniques. One method involves calcium chloride. The exposure to the calcium ions renders the cells able to take up the DNA construct. Another method is electroporation. In this technique, a high-voltage electric field is applied briefly to cells, producing transient holes in the cell membrane through which the vector containing the DNA construct enters. Exemplary procedures for transforming yeast and bacteria with specific DNA are provided in the Examples. In certain aspects, two or more types of DNA can be incorporated into the host cells.
  • a satisfactory microbiological culture contains available sources of hydrogen donors and acceptors, carbon, nitrogen, sulfur, phosphorus, inorganic salts, and, in certain cases, vitamins or other growth-promoting substances.
  • peptone provides a readily available source of nitrogen and carbon.
  • carbon sources including, but not limited to, monosaccharides such as glucose and fructose, disaccharides such as lactose and sucrose, oligosaccharides, polysaccharides such as starch, and mixtures thereof.
  • Unpurified mixtures extracted from feedstocks are also contemplated as carbon sources, as are one-carbon substrates such as carbon dioxide and/or methanol in the cases of compatible organisms. The carbon source utilized is limited only by the particular organism being used.
  • Culturing or fermenting host cells may be accomplished by any technique known in the art.
  • batch fermentation can be conducted.
  • the composition of the culture medium is set at the beginning of culturing and the system is closed to future artificial alterations.
  • a limited form of batch fermentation can be carried out, wherein factors such as oxygen concentration and pH are manipulated, but additional carbon is not added.
  • Continuous fermentation methods are also contemplated.
  • equal amounts of a defined medium are continuously added to and removed from a bioreactor.
  • microbial host cells are immobilized on a substrate. Fermentation can be carried out on any scale and may include methods in which literal“fermentation” is earned out as well as other culture methods that are non- fermentative.
  • a yeast or bacterium can be engineered to be UV-resistant by transforming or transfecting the yeast or bacteria with a nucleic acid able to express a protein up-regulated by UV exposure.
  • the nucleic acids can be under the control of a constitutive promoter.
  • the nucleic acids can be under control of a UV-inducible promoter.
  • the nucleic acids when the yeast or bacterium needs to perform another function, such as fermentation, the nucleic acids can be under control of UV-inducible promoters so as not to impede the other function when UV protection is not required.
  • UV-resistant microbes can be used in fermentation processes, such as the production of alcohol or fuel ethanol, or in the production of chemical and pharmaceutical products, including biological drug products.
  • UV-protective extracts produced by the biological devices disclosed herein.
  • the present UV-protective microbial extracts are able to wholly or partially block the passage of UV radiation.
  • the extent to which UV radiation is blocked can depend on a variety of factors including the particular microbe used, the amount of extract applied, and the formulation of the extract.
  • the UV protective extract can be prepared by exposing a culture of a biological device such as those disclosed herein to UV radiation, then extracting components from the culture.
  • the components are extracted via centrifugation.
  • the culture of the biological device is applied to a subject or surface after UV irradiation and without extraction.
  • the UV radiation can be of any wavelength, but in one aspect, it can be shortwave radiation (i.e., ultraviolet C having a wavelength of approximately 100 to 280 nm), medium wave radiation (i.e., ultraviolet B, having a wavelength of approximately 280 to 315 nm), or longwave radiation (i.e., ultraviolet A having a wavelength of 315 to 400 nm).
  • the culture of the biological device can be irradiated with a 254 nm shortwave UV source. In another aspect, the culture of the biological device can be irradiated with a 365 nm longwave UV source. In still another aspect, the culture of the biological device can be irradiated with both a 254 nm and a 365 nm UV source. In yet another aspect, the culture of the biological device can be irradiated with a natural UV source such as, for example, the sun, providing a range of wavelengths for irradiation.
  • a natural UV source such as, for example, the sun
  • culture of the biological device may proceed until the culture is dense, but not so dense as to trigger deleterious responses (e.g., a response triggered by lack of a food source) and not so dense as to prevent UV radiation from reaching a substantial portion of cells in the culture.
  • the culture can then be irradiated with UV radiation.
  • the culture is transferred to one or more vessels designed to allow a substantial portion of the biological device to be irradiated.
  • the irradiation continues for the length of time needed to induce a radiation response in the biological devices and ends at or before a time at which a substantial portion of the biological devices are fatally irradiated.
  • the extract can be collected after exposing a culture of a biological device to UV irradiation for a period of time ranging from about 12 hours to about 72 hours, or about 12, 24, 36, 48, 60, or 72 hours.
  • the biological devices may continue to be cultured for a time after UV exposure at least sufficient to allow some radiation response in the biological devices.
  • culture may continue until the radiation response has ceased in a majority of the organisms.
  • radiation response can include upregulation of at least one of the following: a phosphoribulokinase, an a-actin, a heat shock protein, a RuBisCO large subunit, a luciferase, an iron oxidase, or a TonB.
  • up-regulation or down-regulation of one or more of these proteins may not be directly responsible for UV-protective properties, such that increased or decreased amounts of these proteins in the extract may have little or no effect on the UV-protective properties of the extract. Further in this aspect, up- regulation or down-regulation of one of these proteins may have downstream effects that ultimately produce a UV-protective effect. In an alternative aspect, up-regulation or down-regulation of one or more of these proteins may be directly responsible for the UV-protective properties of the extract.
  • the extract is prepared in a manner able to isolate at least one UV-protective component.
  • the extract can include centrifuged bacterial or yeast components.
  • the extract is formulated at a variety of concentrations in any acceptable carrier to allow its use for a particular purpose.
  • the extract is formulated in an evaporable carrier, such as water or alcohol, to allow the extract to dry on the surface of the material to be protected from UV radiation.
  • the extract is formulated in a lotion, gel, oil, or cream for application to human or animal skin.
  • the extract can be prepared by centrifuging the culture of biological devices in a manner able to precipitate most proteins, including UV- resistant and/or UV-protective proteins, then discarding the supernatant while retaining the pellet as the extract.
  • the pellet can be used as-is or dried.
  • the pelleted material can be diluted to a given concentration using any acceptable carrier, such as water, alcohol, lotion, gel, oil, or cream.
  • the carrier is non-denaturing.
  • the carrier is denaturing.
  • the carrier also includes materials to inhibit further bacterial growth and/or protein degradation.
  • the supernatant contains UV-protective compounds and is not discarded.
  • the UV-protective and/or UV -resistant compounds and proteins are extracted by another method known in the art for isolating proteins and/or metabolites.
  • the biological device culture may not be pelletized but instead may be killed, for example by lysis or exposure to lethal levels of UV radiation, and the culture medium can be used as-is or in an evaporated form. Further in this aspect, materials to inhibit further microorganism growth and/or protein degradation can also be introduced.
  • cells from any of the cultures described above can be isolated with or without extraction and/or lysis and used in wet or dry form.
  • isolated proteins from the biological device culture can be used in place of a more general extract to produce a UV-protective effect.
  • Such proteins can be isolated by techniques known in the art.
  • the extracts produced from the biological devices described herein may be applied to any material that may benefit from a reduction in UV radiation.
  • the exact formulation of the extract plus any carriers can be adjusted based on the desired use.
  • the extract is formulated with only non-toxic components if it is to be used on a human or animal or with another microorganism, such as in a fermentation process or on an agricultural product.
  • the extract can be mixed with other substances to provide UV-protective properties to the overall composition.
  • the extract itself can be covered with a further protective coating to project, for example, against mechanical wear and damage.
  • the extract can be applied using techniques known in the art such spraying or coating.
  • the extract can be intimately mixed with a substance or material that ultimately produces the article.
  • the extract can be mixed with molten glass so that the extract is dispersed throughout the final glass product.
  • the extract is formulated or applied in such a manner as to block approximately 50%, 60%, 70%, 80%, 90%, 95%, or 99% of the UV radiation that encounters the extract, where any value can be a lower and upper end-point of a range (e.g., 60% to 95%).
  • the extract can also be formulated to block these percentages of particular UV wavelengths, or, more generally, to block these percentages of UVA, UVB, or UVC radiation.
  • Extracts according to the present disclosure can be used for a variety of purposes. These purposes include, but are not limited to, the following:
  • an extract prepared according to the procedure described above can be applied to an agricultural plant.
  • the plant can be one that produces fruit or vegetable, such as, for example, a watermelon or a tomato.
  • the extract can be applied during at least a part of the plant’s growth to increase the amounts of one or more nutrients of the fruit or vegetable, such as a vitamin, mineral, or other recommended dietary component.
  • the amount of lycopene can be increased (which may be accompanied by a decrease in carotene or other less-valuable nutrients formed by competing pathways).
  • the amount of a flavor-enhancing component, such as glucose can be increased. Further in this aspect, an increase in glucose can help protect against water loss.
  • the extract can be applied for about 25%, 50%, 75%, 90%, 95%, or 99% of the fruit or vegetable’s on-plant life, where the on-plant life includes the time span from the formation of a separate body that will constitute the fruit or vegetable (in some aspects, excepting flowers) until the fruit or vegetable is harvested.
  • the extract can be first applied when the fruit or vegetable is sufficiently large to no longer be substantially protected from UV radiation by leaves.
  • the extract can first be applied five days, one week, or two weeks prior to harvest. Further in this aspect, application at this later stage can be particularly useful with fruits or vegetables in which an increase in a nutrient or flavor-enhancing component can be obtained by protecting the fruit or vegetable from UV radiation later in its on-plant life.
  • the extract can be applied once or multiple times to each fruit or vegetable. In another aspect, it can be applied weekly, or it can be reapplied after the fruit or vegetable is exposed to rain or after a turning process.
  • the agricultural plant can be another food crop that grows above ground and is exposed to natural UY radiation, wherein the agricultural product produced can be a fruit, leaf, seed, flower, grain, nut, stem, vegetable, or mushroom.
  • these other agricultural plants can includes sources of fibers such as, for example, cotton and linen (flax), of cork, of wood or lumber, of feedstocks for producing ethanol or biodiesel (including, but not limited to, sugar beet, sugarcane, cassava, sorghum, com, wheat, oil palm, coconut, rapeseed, peanut, sunflower, soybean, and the like), of animal feedstocks or fodder, or of decorative or horticultural plants.
  • fibers such as, for example, cotton and linen (flax), of cork, of wood or lumber, of feedstocks for producing ethanol or biodiesel (including, but not limited to, sugar beet, sugarcane, cassava, sorghum, com, wheat, oil palm, coconut, rapeseed, peanut, sunflower, soybean, and the like), of animal feedstocks or fodder, or of decorative or horticultural plants.
  • any part of the plant can be coated, including, but not limited to, the part of the plant that is collected during harvest.
  • the harvested part of the plant is not coated, but another part can be coated with the extracts disclosed herein.
  • coating a plant with the extracts described herein can prolong the life of the plant, increase production capacity of a desired product, can increase the growth rate of the plant relative to an untreated plant of the same type, can increase production of a desired metabolite that might otherwise decrease due to UV-mduced stress, can increase yield of a crop of such plants, and the like.
  • application can be accomplished with a commercial sprayer.
  • application can be only on the upper portions of the fruit or vegetable, which are exposed to substantially greater amounts of UV radiation than the lower portions of the fruit or vegetable.
  • a pharmaceutical composition containing the extracts produced by the biological devices described herein.
  • the pharmaceutical composition can be applied to a subject, wherein the subject is exposed to radiation.
  • the radiation is applied as a strategy to treat cancer.
  • the pharmaceutical composition is used to prevent radiation-induced cellular and DNA damage.
  • dosage ranges of the extract in the pharmaceutical composition can vary from 0.01 g extract/mL of pharmaceutical composition to 1 g extract/mL of pharmaceutical composition, or can be 0.01, 0.02, 0.025, 0.05, 0.075, or 1 g extract/mL of pharmaceutical composition.
  • a cosmetic composition containing the extracts produced by the biological devices described herein.
  • the cosmetic composition can be a cleanser, lotion, cream, shampoo, hair treatment, makeup, lip treatment, nail treatment, or related composition.
  • the compositions containing the extracts can have both pharmaceutical and cosmetic applications.
  • the compositions containing the extracts can be used in veterinary medicine.
  • the cosmetic compositions can be formulated in any physiologically acceptable medium typically used to formulate topical compositions.
  • the cosmetic compositions can be in any galenic form conventionally used for a topical application such as, for example, in the form of dispersions of aqueous gel or lotion type, emulsions of liquid or semi-liquid consistency of the milk type, obtained by dispersing a fatty phase in an aqueous phase (O/W) or vice versa (W/O), or suspensions or emulsions of soft, semi-solid or solid consistency of the cream or gel type, or alternatively multiple emulsions (W/O/VV or O/W/O), microemulsions, vesicular dispersions of ionic and/or non-ionic type, or wax/aqueous phase dispersions.
  • These compositions are prepared according to the usual methods.
  • the cosmetic compositions can also contain one or more additives commonly used in the cosmetics field, such as emulsifiers, preservatives, sequestering agents, fragrances, thickeners, oils, waxes or film-forming polymers.
  • the pharmaceutical, cosmetic, or veterinary composition also includes additional UV-protective compounds or UV -blocking agents such as, for example, zinc oxide, titanium dioxide, carotenoids, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or a combination thereof.
  • the composition is a sunscreen.
  • a sunscreen can be formulated with any of the extracts produced herein.
  • the sunscreen in certain aspects can be formulated with one or more UV -protective compounds or UV- blocking agents listed above.
  • the sunscreen can be formulated as a paste, lotion, cream, aerosol, or other suitable formulations for topical use.
  • the sunscreen can be formulated as a transparent composition.
  • the cosmetic composition can be a film composed of the extracts produced herein that can be directly applied to the skin.
  • the film can be composed of a biocompatible material such as a protein or oligonucleotide, where the extract is coated on one or more surfaces of the film or, in the alternative dispersed throughout the film.
  • the film can be composed of DNA.
  • the films can be used as a wound covering and provide protection from UV photodamage.
  • the films can also be prepared so that they are optically transparent. Here, it is possible to view the wound without removing the covering and exposing the wound.
  • the films can also include other components useful in cosmetic applications such as, for example, compounds to prevent or reduce wrinkles.
  • the pharmaceutical, cosmetic, or veterinary compositions described herein are applied to subjects.
  • the subject is a human, another mammal, or a bird.
  • the mammal is a pet such as a dog or cat or is livestock such as horses, goats, cattle, sheep, and the like.
  • the bird is a pet bird or is poultry such as, for example, a chicken or turkey.
  • the compositions can be applied to skin, fur, feathers, wool, hooves, horns, or hair as appropriate and applicable.
  • a paint, dye, stain, or ink containing the UV-protective and/or UV-resistant extract disclosed herein there are several benefits to having a paint that is resistant to UV irradiation.
  • imparting UV resistance to a paint slows or stops photodegradation, bleaching, or color fading.
  • a paint with UV resistance prevents chemical modification of exposed paint surfaces.
  • chemical modification of exposed paint surfaces includes change in finish, structural changes in binders, flaking, chipping, and the like.
  • the paint provided herein resists these changes.
  • the article is made of glass, plastic, metal, wood, fabric, or any combination thereof.
  • the article is a construction material such as, for example, steel, concrete or cement, brick, wood, window or door glass, fiberglass, siding, wallboard, a floonng material, masonry, mortar, grout, stone, artificial stone, stucco, shingles, roofing materials, and the like.
  • the material is an aeronautical or aerospace material such as, for example, the metal or metal alloy body of an aircraft or spacecraft, paint on the body of an aircraft or spacecraft, glass windows on an aircraft or spacecraft, carbon fiber composite, titanium or aluminum, a ceramic heat absorbing tile, and the like.
  • the article is a fabric article such as, for example, clothing, drapes, outdoor upholstery, a tent or outdoor pavilion, a flag or banner, or the like.
  • the extract can be applied to the article to fine artwork, solid pieces (e.g., vases), and historical documents in order to preserve them.
  • the extract can be applied to outdoor signs such as highway billboards and advertising.
  • the extract can be incorporated within or throughout the article.
  • the extract can be mixed with molten glass to produce glass article that are UV resistant such as, for example, sunglasses, car windshields, window glass, and eyeglasses.
  • the glass article can be a bottle for storing a beverage or food container in order to increase the shelf-life of the beverage or food. It is contemplated that the extract can be applied externally to the glass articles as well.
  • the extract can be mixed with fiberglass or plastics in order to reduce negative effects to aircraft, watercraft, boats, jet skis, decking, house siding, motor homes, sunroofs, and moon roofs that are constantly exposed to UV radiation. It is contemplated that the extract can be applied externally to the fiberglass or plastic articles as well. In another aspect, the extract can be mixed with rubber, silicon, or latex used to make a variety of articles such as water hoses, tires, and the like. It is contemplated that the extract can be applied externally to the rubber, silicone, or latex articles as well.
  • the extract can be mixed with foams used to make a variety of articles such as automotive dashboard padding, seat cushions, and the like. It is contemplated that the extract can be applied externally to the foam articles as well.
  • the extracts described herein can be incorporated into an optical film.
  • the extract is applied to at least one surface of the film.
  • the extract can be dispersed throughout the film.
  • the film can be transparent, translucent or opaque.
  • the film can be composed of, but not limited to, polyolefin resin, such as polyethylene (PE) or polypropylene (PP); polyester resin, such as polyethylene terephthalate (PET); polyacrylate resin, such as polymethyl (meth (acrylate (PMMA); polycarbonate resin; polyurethane resin or a mixture thereof.
  • the optical film can be applied to any substrate where it is desirable to reduce or prevent UV exposure or damage.
  • the optical film can be applied to windows to reduce or prevent UV radiation from entering a structure (e.g., building, vehicle, etc.).
  • reducing is defined relative to an untreated control.
  • treatment with the extracts disclosed herein will prevent UV exposure from occurring.
  • “prevent” indicates that a treated item will not be affected, changed, or altered by UV exposure.
  • the extract blocks from 50% to 100% of UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of UV radiation from contacting the item. In another aspect, the extract blocks from 50% to 100% of longwave UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of longwave UV radiation from contacting the item. In one aspect, the extract blocks from 50% to 100% of shortwave UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of shortwave UV radiation from contacting the item.
  • the extract can prevent or reduce damage cause by UV radiation from limited to extended periods of time.
  • the degree of UV protection can be varied. In certain aspects, it may be desirable for the article to be protected from UV damage for a short period of time then subsequently biodegrade.
  • the extracts produced herein can be used to reduce or prevent the growth of barnacles on boats and other water vehicles.
  • the extract can be admixed with a paint that is typically applied to water vehicles, where the paint also includes chitosan.
  • the chitosan can be acetylated to a specific degree of acetylation in order to enhance tissue growth during culturing as well as metabolite production.
  • the chitosan is from 60% to about 100%, 70% to 90%, 75% to 85%, or about 80% acetylated.
  • chitosan isolated from the shells of crab, shrimp, lobster, and/or krill is useful herein.
  • the molecular weight of the chitosan can vary, as well.
  • the chitosan comprises about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units and/or N-acetylglucosamine units.
  • the chitosan includes 5 to 7 glucosamine units and/or N-acetylglucosamine units.
  • a plant that is resistant to UV radiation.
  • plant is used in a broad sense to include, for example, any species of woody, ornamental, crop, cereal, fruit, or vegetable plant, as well as photosynthetic green algae.
  • Plant also refers to a plurality of plant cells that are differentiated into a structure that is present at any stage of a plant’s development. Such structures include, but are not limited to, fruits, shoots, stems, leaves, flower petals, roots, tubers, corms, bulbs, seeds, gametes, cotyledons, hypocotyls, radicles, embryos, gametophytes, tumors, and the like.
  • Plant cell refers to differentiated and undifferentiated tissues of plants including those present in any of the tissues described above, as well as to cells in culture such as, for example, single cells, protoplasts, embryos, calluses, etc. It is contemplated that any cell from which a fertile plant can be regenerated is useful as a recipient cell.
  • Type I, Type II, and Type III callus can be initiated from tissue sources including, but not limited to, immature embryos, immature inflorescences, seedling apical meristems, microspores, and the like. Those cells that are capable of proliferating as callus are also useful herein. Methods for growing plant cells are known in the art (see US Patent No. 7,919,679).
  • plant calluses grown from 2 to 4 weeks can be used herein.
  • the plant cells can be derived from plants varying in age.
  • the plant cells can be contacted with the biological device or extracts produced therefrom in a number of different ways.
  • the device or extract can be added to a medium containing the plant cells.
  • the device or extract can be injected into the plant cells via syringe.
  • the amount of device and the duration of exposure to the device can vary as well.
  • the concentration of the device is about 10 3 , 10 4 , 10 5 , 10 6 , 10 7 , 10 8 , or 10 9 cells/mL of water.
  • the concentration of the device is 10 6 .
  • the concentration of the device is 10 9 .
  • Different volumes of the biological device can be used as well, ranging from 5 pL to 500 pL.
  • any of the biological devices described above can be used in combination with a polysaccharide to enhance one or more physiological properties of the plant.
  • the plant cells are first contacted with the biological device, then subsequently contacted with the polysaccharide.
  • the plant cells are first contacted with the polysaccharide and subsequently contacted with the biological device.
  • the plant cells are simultaneously contacted with the polysaccharide and the biological device.
  • the polysaccharide includes chitosan, glucosamine (GlcN), N- acetylglucosamine (NAG), or any combination thereof.
  • Chitosan is generally composed of glucosamine units and N-acetylglucosamine units and can be chemically or enzymatically extracted from chitin, which is a component of arthropod exoskeletons and fungal and microbial cell walls.
  • the chitosan can be acetylated to a specific degree of acetylation in order to enhance tissue growth during culturing as well as metabolite production.
  • the chitosan is from 60% to about 100%, 70% to 90%, 75% to 85%, or about 80% acetylated. In one aspect, chitosan isolated from the shells of crab, shrimp, lobster, and/or krill is useful herein.
  • the molecular weight of the chitosan can vary, as well.
  • the chitosan comprises about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units and/or N-acetylglucosamine units.
  • the chitosan includes 5 to 7 glucosamine units and/or N-acetylglucosamine units.
  • the chitosan is in a solution of water and acetic acid at less than 1% by weight, less than 0.75% by weight, less than 0.5% by weight, less than 0.25% by weight, or less than 0.1% by weight.
  • the amount of chitosan that is applied to the plant cells is from 0.1% to 0.01% by weight, from 0.075% to 0.025% by weight, or is about 0.05% by weight.
  • the polysaccharides used herein are generally natural polymers and thus present no environmental concerns. Additionally, the polysaccharide can be used in acceptably low concentrations.
  • the plant cells can be contacted with the polysaccharide using a number of techniques.
  • the plant cells or reproductive organs e.g., a plant embryo
  • the polysaccharide can be applied to a plant callus by techniques such as, for example, coating the callus or injecting the polysaccharide into the callus.
  • the age of the callus can vary depending upon the type of plant.
  • the amount of polysaccharide can vary depending upon, among other things, the selection and number of plant cells.
  • the use of the polysaccharide in the methods described herein permits rapid tissue culturing at room temperature.
  • the tissue cultures can grow for extended periods of time ranging from days to several weeks. Moreover, tissue culturing with the polysaccharide can occur in the dark and/or light. As discussed above, the plant cells can be contacted with any of the biological devices described above. Thus, the use of the polysaccharides and biological devices described herein is a versatile way to culture and grow plant cells - and ultimately, plants of interest - with enhanced physiological properties.
  • a plant callus such as described above can be planted and allowed to grow and mature into a plant bearing fruit and leaves.
  • the plant callus is cultured with chitosan.
  • the chitosan is from 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% acetylated and has 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units, N-acetylglucosamine units, or a combination thereof, where any value can be a lower and upper end-point of a range (e.g., 60% to 80% acetylation).
  • a method for increasing the UV- resistance of a plant the method involving growing a plant from plant cells that have been contacted with the biological devices and extracts disclosed herein.
  • increased UV-resistance can be measured by growing plants from a treated and an untreated callus alongside one another and comparing UV-induced damage after a period of time.
  • an agricultural product harvested from a UV-resistant plant will also be more UV -resistant.
  • cotton from a cotton plant grown with the biological devices and extracts will be more UV-resistant than cotton grown from an untreated plant.
  • a DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
  • a DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
  • Aspect 3 The DNA construct in any preceding aspect, wherein the gene that expresses phosphoribulokinase has SEQ ID NO. 1 or at least 70% homology thereto.
  • Aspect 4 The DNA construct in any preceding aspect, wherein the gene that expresses a-actin has SEQ ID NO. 2 or at least 70% homology thereto.
  • Aspect 5 The DNA construct in any preceding aspect, wherein the gene that expresses a heat shock protein expresses HSP70.
  • Aspect 6 The DNA construct of aspect 5, wherein the gene that expresses HSP70 has SEQ ID NO. 3 or at least 70% homology thereto.
  • Aspect 7 The DNA construct in any preceding aspect, wherein the gene that expresses RuBisCO large subunit 1 has SEQ ID NO. 4 or at least 70% homology thereto.
  • Aspect 8 The DNA construct in any preceding aspect, wherein the gene that expresses luciferase has SEQ ID NO. 5 or at least 70% homology thereto.
  • Aspect 9 The DNA construct in any preceding aspect, wherein the gene that expresses iron oxidase has SEQ ID NO. 7 or at least 70% homology thereto.
  • Aspect 10 The DNA construct of aspect 2, wherein the gene that expresses TonB has SEQ ID NO. 9 or at least 70% homology thereto.
  • Aspect 11 The DNA construct in any preceding aspect, wherein the construct further comprises a promoter.
  • Aspect 12 The DNA construct of aspect 11, wherein the promoter comprises a GAL1 promoter, an iron promoter, or both.
  • Aspect 13 The DNA construct of aspect 12, wherein the iron promoter has SEQ ID NO. 6 or at least 70% homology thereto.
  • Aspect 14 The DNA construct in any preceding aspect, wherein a Gall promoter is positioned before (a) the gene that expresses phosphoribulokinase, (b) the gene that expresses a-actin, (c) the gene that expresses TonB, (d) the gene that expresses a heat shock protein, (e) the gene that expresses RuBisCO large subunit 1, (f) the gene that expresses luciferase, and (g) the gene that expresses iron oxidase, or any combination thereof.
  • Aspect 15 The DNA construct in any preceding aspect, wherein the construct further comprises a terminator.
  • Aspect 16 The DNA construct of aspect 15, wherein the terminator is a CYC1 terminator.
  • Aspect 17 The DNA construct in any preceding aspect, wherein the construct further comprises a gene that confers resistance to an antibiotic.
  • Aspect 18 The DNA construct of aspect 17, wherein the antibiotic comprises tetracycline, neomycin, kanamycin, ampicillin, hygromyc , chloramphenicol, amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazid, methicillin, oxacillin, vancomycin, streptomycin, quinolines, rifampin, rifampicin, sulfonamides, cephalothin, erythromycin, gentamicin, penicillin, other commonly-used antibiotics, or a combination thereof.
  • the antibiotic comprises tetracycline, neomycin, kanamycin, ampicillin, hygromyc , chloramphenicol, amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazi
  • Aspect 19 The DNA construct in any preceding aspect, wherein the construct further comprises a gene that expresses a reporter protein.
  • Aspect 20 The DNA construct of aspect 19, wherein the gene that expresses the reporter protein, expresses a fluorescent protein.
  • Aspect 21 The DNA construct of aspect 20, wherein the reporter protein comprises a red fluorescent protein, a cyan fluorescent protein, a green fluorescent protein, a yellow fluorescent protein, or a combination thereof.
  • Aspect 22 The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin , (3) a gene that expresses a heat shock protein, (4) a gene that expresses RuBisCO large subunit 1, (5) a gene that expresses luciferase, (6) an iron promoter, and (7) a gene that expresses iron oxidase.
  • Aspect 23 The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (4) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (5) a gene that expresses luciferase having SEQ ID NO.
  • an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto (6) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (7) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
  • Aspect 24 The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses a heat shock protein having SEQ ID NO.
  • a CYC1 terminator (9) a GAL1 promoter, (10) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (14) a CYC1 terminator, (15) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (16) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
  • Aspect 25 The DNA construct of aspect 1, wherein the DNA construct has SEQ ID NO. 8 or at least 70% homology thereto.
  • Aspect 26 The DNA construct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin, (3) a gene that expresses TonB, (4) a gene that expresses a heat shock protein, (5) a gene that expresses RuBisCO large subunit 1, (6) a gene that expresses luciferase, (7) an iron promoter, and (8) a gene that expresses iron oxidase.
  • Aspect 27 The DNA construct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (4) a gene that expresses a heat shock protein having SEQ ID
  • Aspect 28 The DNA constmct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses TonB having SEQ ID NO.
  • a CYC1 terminator (9) a GAL1 promoter, (10) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (14) a CYC1 terminator, (15) a GAL1 promoter, (16) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (17) a CYC1 terminator, (18) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (19) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
  • Aspect 29 The DNA construct of aspect 2, wherein the DNA constmct has SEQ ID NO. 10 or at least 70% homology thereto.
  • Aspect 30 A vector comprising the DNA construct in any preceding aspect.
  • Aspect 31 The vector of aspect 30, wherein the vector is a plasmid.
  • Aspect 32 The vector of aspect 30, wherein the vector is pWLNEO, pSV2CAT, pOG44, pXTI, pSG, pSVK3, pBSK, pBR322, pYES, pYES2, pBSKII, or pUC.
  • Aspect 33 The vector of aspect 30, wherein the vector is pYES2.
  • Aspect 34 The vector of aspect 30, wherein the vector is pBSK.
  • Aspect 35 A biological device comprising host cells transformed with the DNA construct or vector in any preceding aspect.
  • Aspect 36 The biological device of aspect 35, wherein the host cells comprise yeast or bacteria.
  • Aspect 37 The biological device of aspect 36, wherein the bacteria comprise Escherichia coli
  • Aspect 38 The biological device of aspect 36, wherein the yeast comprise Saccharomyces cerevisiae.
  • Aspect 39 An extract produced by the biological device of aspect 35-38.
  • Aspect 40 The extract of aspect 39, wherein the extract is produced by exposing a culture of the biological device to UV radiation.
  • a pharmaceutical composition comprising the extract of aspect 39 or 40.
  • Aspect 42 The pharmaceutical composition of aspect 41, further comprising a UV- blocking agent.
  • Aspect 43 The pharmaceutical composition of aspect 42, wherein the UV-blocking agent is zinc oxide, titanium dioxide, a carotenoid, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or any combination thereof.
  • the UV-blocking agent is zinc oxide, titanium dioxide, a carotenoid, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or any combination thereof.
  • a sunscreen comprising the extract of aspect 39 or 40.
  • Aspect 45 A paint, ink, dye, or stain comprising the extract of aspect 39 or 40.
  • Aspect 46 A plant coated with the extract of aspect 39 or 40.
  • Aspect 47 An agricultural product coated with the extract of aspect 39 or 40.
  • Aspect 48 The agricultural product of aspect 47, wherein the agricultural product comprises fruits, leaves, seeds, flowers, grains, nuts, stems, vegetables, or mushrooms.
  • Aspect 49 An article comprising the extract of aspect 39 or 40, wherein the article is coated with the extract, the extract is dispersed throughout the article, or a combination thereof.
  • Aspect 50 The article of aspect 49, wherein the article is made of glass, fiberglass, plastic, metal, wood, fabric, foam, rubber, latex, silicone, or any combination thereof.
  • Aspect 51 A method of reducing or preventing exposure of an item to UV radiation comprising applying to the item the extract of aspect 39 or 40.
  • Aspect 52 The method of aspect 51, wherein the extract blocks at least 50% of UV radiation from contacting the item.
  • Aspect 53 The method of aspect 51, wherein the extract blocks at least approximately 50% of longwave UV radiation from contacting the item.
  • Aspect 54 The method of aspect 51, wherein the extract blocks at least approximately 50% of shortwave UV radiation from contacting the item.
  • Aspect 55 The method of aspect 51, wherein the item comprises the skin of a subject.
  • Aspect 56 The method of aspect 51, wherein the item comprises an agricultural product.
  • Aspect 57 The method of aspect 51, wherein the item comprises a construction material, an aeronautical material, or an aerospace matenal.
  • Aspect 58 A plant grown by the process comprising contacting plant gamete cells, a plant callus, or a plant reproductive organ with the device in any one of aspects 35-38 or the extract of aspects 39 or 40.
  • Aspect 59 The plant of aspect 58, wherein the plant is produced by the method comprising the steps of:
  • Aspect 60 The plant of aspect 59, wherein the plant callus is cultured with chitosan.
  • Aspect 61 The plant of claim 60, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamme units, or a combination thereof.
  • Aspect 62 A method for increasing the UV resistance of a plant, the method comprising growing a plant from plant cells that have been contacted with the biological device in any one of aspects 32-35 35-38 or the extract of aspects 39 or 40.
  • Aspect 63 The method of claim 62, wherein the plant is a cotton plant.
  • Aspect 64 A method for reducing or preventing the growth of barnacles on a surface, the method comprising applying a paint comprising the extract of aspects 39 or 40 and chitosan to the surface.
  • Aspect 65 The method of aspect 64, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamme units, or a combination thereof.
  • a cosmetic composition comprising a physiologically acceptable medium and the extract of aspects 39 or 40.
  • Aspect 67 An optical film comprising the extract of aspects 39 or 40.
  • reaction conditions e.g., component concentrations, desired solvents, solvent mixtures, temperatures, pressures, and other reaction ranges and conditions can be used to optimize the product punty and yield obtained from the desired process. Only reasonable and routine experimentation will be required to optimize such processes and conditions.

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Abstract

Described herein are UV-resistant or UV-protective biological devices and extracts produced therefrom. The biological devices include microbial cells transformed with a DNA construct containing genes for producing UV-resistant proteins such as, for example, phosphoribulokinase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, and TonB. Methods for producing and using the devices are also described herein. Finally, compositions and methods for using the devices and extracts to reduce or prevent UV-induced damage or exposure to materials, items, plants, and human and animal subjects are described herein.

Description

UV-RESISTANT BIOLOGICAL DEVICES AND EXTRACTS AND METHODS FOR PRODUCING AND USING THE SAME
CROSS REFERENCE TO RELATED APPLICATIONS
This application claims priority upon U.S. provisional application Serial No. 62/864,600 filed on June 21, 2019. This application is hereby incorporated by reference in its entirety.
CROSS REFERENCE TO SEQUENCE LISTING
The genetic components described herein are referred to by a sequence identifier number (SEQ ID NO). The SEQ ID NO corresponds numerically to the sequence identifiers <400>1, <400>2, etc. The Sequence Listing, in written computer readable format (CRF), is incorporated by reference in its entirety.
BACKGROUND
Exposure to UV radiation causes harmful effects in a wide variety of things, both living and non-living. For example, exposure of human skin to UV radiation can cause severe sunburn and skin cancer and exposure of beneficial microorganisms to UV radiation can kill them. UV radiation can also cause materials to degrade prematurely and thus suffer mechanical failure or otherwise become unable to serve their intended purposes.
The harmful effects of UV radiation can generally be prevented or lessened through the simple step of using a compound or composition to absorb all or a portion of UV radiation before it reaches the item it may harm. For example, chemicals in sunscreen absorb a portion of the UV radiation that would normally reach the skin and, as a result, help protect the skin from sunburn and skin cancer.
Although numerous substances capable of absorbing UV radiation are known, not all of them are suitable for all possible uses. Further, some substances may be expensive to produce or may have harmful side effects, such as toxicity or undesired chemical reactions with a protected material. Other substances simply do not last long enough in the environment in which they are used, or persist long after their period of usefulness.
Accordingly, there is a demand for new substances able to absorb UV radiation, particularly if those substances are biocompatible. The present invention addresses this demand.
SUMMARY
Described herein are UV-resistant or UV-protective biological devices and extracts produced therefrom. The biological devices include microbial cells transformed with a DNA construct containing genes for producing UV-resistant proteins such as, for example, phosphoribulokinase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, and TonB. Methods for producing and using the devices are also described herein. Finally, compositions and methods for using the devices and extracts to reduce or prevent UV-induced damage or exposure to materials, items, plants, and human and animal subjects are described herein.
The advantages of the invention will be set forth in part in the description that follows, and in part will be obvious from the description, or may be learned by practice of the aspects described below. The advantages described below will be realized and attained by means of the elements and combinations particularly pointed out in the appended claims. It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive.
BRIEF DESCRIPTION OF THE DRAWINGS
The accompanying drawings, which are incorporated in and constitute a part of this specification, illustrate several aspects described below.
Figures 1 A and IB show, respectively, linear and circular schematics of a constructed pYES2 plasmid showing the direction, placement, and size of genetic parts used in one aspect of an exemplary DNA device described herein. Figures 2A and 2B show, respectively, linear and circular schematics of a second constructed pYES2 plasmid showing the direction, placement, and size of genetic parts used in another aspect of an exemplary DNA device described herein.
DETAILED DESCRIPTION
Before the present compounds, compositions, articles, devices, and/or methods are disclosed and described, it is to be understood that the aspects described below are not limited to specific compounds, synthetic methods, or uses, as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular aspects only and is not intended to be limiting.
In this specification and in the claims that follow, reference will be made to a number of terms that shall be defined to have the following meanings:
It must be noted that, as used in the specification and the appended claims, the singular forms“a,”“an,” and“the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to“an isolated nucleic acid” includes mixtures of two or more such nucleic acids, and the like.
“Optional” or“optionally” means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where the event or circumstance occurs and instances where it does not. For example, the phrase“optionally includes a gene for a selective marker” means that the gene may or may not be present.
As used herein, the term“about” is used to provide flexibility to a numerical range endpoint by providing that a given value may be“a little above” or“a little below” the endpoint without affecting the desired result.
Throughout this specification, unless the context dictates otherwise, the word “comprise,” or variations such as“comprises” or“comprising,” will be understood to imply the inclusion of a stated element, integer, step, or group of elements, integers, or steps, but not the exclusion of any other element, integer, step, or group of elements, integers, or steps.
As used herein, a plurality of items, structural elements, compositional elements, and/or materials may be presented in a common list for convenience.
However, these lists should be construed as though each member of the list is individually identified as a separate and unique member. Thus, no individual member of any such list should be construed as a de facto equivalent of any other member of the same list based solely on its presentation in a common group, without indications to the contrary.
Concentrations, amounts, and other numerical data may be expressed or presented herein in a range format. It is to be understood that such a range format is used merely for convenience and brevity and thus should be interpreted flexibly to include not only the numerical values explicitly recited as the limits of the range, but also to include all the individual numencal values or sub-ranges encompassed within that range as if each numerical value and sub-range was explicitly recited. As an example, a numencal range of“about 1” to“about 5” should be interpreted to include not only the explicitly recited values of about 1 to about 5, but also to include individual values and sub-ranges within the indicated range. Thus, included in this numerical range are individual values such as 2, 3, and 4, the sub ranges such as from 1-3, from 2-4, from 3-5, etc., as well as 1, 2, 3, 4, and 5, individually. The same principle applies to ranges reciting only one numerical value as a minimum or maximum. Furthermore such an interpretation should apply regardless of the breadth or range of the characters being described.
Disclosed are materials and components that can be used for, can be used in conjunction with, can be used in preparation for, or are products of the disclosed compositions and methods. These and other materials are disclosed herein, and it is understood that when combinations, subsets, interactions, groups, etc. of these materials are disclosed, that while specific reference of each various individual and collective combination and permutation of these compounds may not be explicitly disclosed, each is specifically contemplated and described herein. For example, if a yeast is disclosed and discussed and a number of different compatible yeast plasmids are discussed, each and every combination and permutation of yeast and yeast plasmid that is possible is specifically contemplated unless specifically indicated to the contrary. For example, if a class of molecules A, B, and C are disclosed as well as a class of molecules D, E, and F, and an example of a combination molecule, A-D, is disclosed, then even if each is not individually recited, each is individually and collectively contemplated. Thus, in this example, each of the combinations A-E, A-F, B-D, B-E, B-F, C-D, C-E, and C-F are specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D. Likewise, any subset or combination of these is also specifically contemplated and disclosed. Thus, for example, the sub-group of A-E, B-F, and C-E is specifically contemplated and should be considered disclosed from disclosure of A, B, and C; D, E, and F; and the example combination A-D. This concept applies to all aspects of this disclosure including, but not limited to, steps in methods of making and using the disclosed compositions. Thus, if a variet of additional steps can be performed, it is understood that each of these additional steps can be performed with any specific embodiment or combination of embodiments of the disclosed methods, and that each such combination is specifically contemplated and should be considered disclosed. References in the specification and concluding claims to parts by weight of a particular element or component in a composition or article, denote the weight relationship between the element or component and any other elements or components in the composition or article for which a part by weight is expressed. Thus, in a compound containing 2 parts by weight of component X and 5 parts by weight of component Y, X and Y are present at a weight ratio of 2:5, and are present in such ratio regardless of whether additional components are contained in the compound.
A weight percent of a component, unless specifically stated to the contrary, is based on the total weight of the formulation or composition in which the component is included.
“Heterologous” genes and proteins are genes and proteins that have been experimentally put into a cell that are not normally expressed by that cell. A heterologous gene may be cloned or derived from a different cell type or species than the recipient cell or organism. Heterologous genes may be introduced into cells by transduction or transformation.
An“isolated” nucleic acid is one that has been separated from other nucleic acid molecules and/or cellular material (peptides, proteins, lipids, saccharides, and the like) normally present in the natural source of the nucleic acid. An“isolated” nucleic acid may optionally be free of the flanking sequences found on either side of the nucleic acid as it naturally occurs. An isolated nucleic acid can be naturally occurring, can be chemically synthesized, or can be a cDNA molecule (i.e., is synthesized from an mRNA using reverse transcriptase and DNA polymerase enzymes).
“Transformation” or“transfection” as used herein refers to a process for introducing heterologous DNA into a host cell. Transformation can occur under natural conditions or may be induced using various methods known in the art. Many methods for transformation are known in the art and the skilled practitioner will know how to choose the best transformation method based on the types of cells being transformed. Methods for transformation include, for example, viral infection, electroporation, lipofection, chemical transformation, and particle bombardment. Cells may be stably transformed (i.e., the heterologous DNA is capable of replicating as an autonomous plasmid or as part of the host chromosome) or may be transiently transformed (i.e., the heterologous DNA is expressed only for a limited period of time).
“Competent cells” refers to microbial cells capable of taking up heterologous DNA. Competent cells can be purchased from a commercial source, or cells may be made competent using procedures known in the art. Exemplary procedures for producing competent cells are provided in the Examples.
DNA Constructs and Biological Devices
The biological devices described herein can be used to produce UV-protective proteins, extracts, and other components. The devices are generally composed of host cells, where the host cells are transformed with a DNA construct described herein that promotes the expression of proteins involved in UV resistance responses. It is understood that one way to define the variants and derivatives of the genetic components and DNA constructs described herein is through defining the variants and derivatives in terms of homology/identity to specific known sequences. Those of skill in the art readily understand how to determine the homology of two nucleic acids. For example, the homology can be calculated after aligning two sequences so that the homology is at its highest level. Another way of calculating homology can be performed by published algorithms (see Zuker, M., 1989, Science , 244:48-52; Jaeger et al. , 1989, Proc. Natl. Acad. Sci. USA. 86:7706-7710; Jaeger et al, 1989, Methods Enymol ., 183:281-306, which are herein incorporated by reference for at least material related to nucleic acid alignment).
As used herein,“conservative” mutations are mutations that result in an amino acid change in the protein produced from a sequence of DNA. When a conservative mutation occurs, the new amino acid has similar properties as the wild type amino acid and generally does not drastically change the function or folding of the protein (e.g., switching isoleucine for valine is a conservative mutation since both are small, branched, hydrophobic amino acids). “Silent mutations,” meanwhile, change the nucleic acid sequence of a gene encoding a protein but do not change the amino acid sequence of the protein.
It is understood that the description of conservative mutations and homology can be combined together in any combination, such as embodiments that have at least 70%, 75%, 80%, 85%, 90%, 95%, or 99% homology to a particular sequence wherein the variants are conservative mutations. It is understood that any of the sequences described herein can be a variant or derivative having the homology values listed above. In one aspect, the separate elements of the DNA constructs disclosed herein have at least 90% homology with the sequences disclosed herein. In another aspect, the separate elements have at least 95% homology or at least 99% homology with the sequences disclosed herein.
In one aspect, a database such as, for example, GenBank, can be used to determine the sequences of genes and/or regulatory regions of interest, the species from which these elements originate, and related homologous sequences.
In one aspect, the DNA construct includes the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
In another aspect, the DNA construct includes the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
In one aspect, the DNA construct described herein can promote the expression of UV-resistant proteins. In one aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
In another aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
In one aspect, the regulatory sequence is already incorporated into a vector such as, for example, a plasmid, prior to genetic manipulation of the vector. In another aspect, the regulatory sequence can be incorporated into the vector through the use of restriction enzymes or any other technique known in the art.
In one aspect, the regulatory sequence is a promoter. The term“promoter” refers to a DNA sequence capable of controlling the expression of a coding sequence. In one aspect, the coding sequence to be controlled is located 3' to the promoter. In another aspect, the promoter is derived from a native gene. In an alternative aspect, the promoter is composed of multiple elements derived from different genes and/or promoters. A promoter can be assembled from elements found in nature, from artificial and/or synthetic elements, or from a combination thereof. It is understood by those skilled in the art that different promoters can direct the expression of a gene in different tissues or cell types, at different stages of development, in response to different environmental or physiological conditions, and/or in different species. In one aspect, the promoter functions as a switch to activate the expression of a gene.
In one aspect, the promoter is“constitutive.” A constitutive promoter is a promoter that causes a gene to be expressed in most cell types at most times. In another aspect, the promoter is“regulated.” A regulated promoter is a promoter that becomes active in response to a specific stimulus. A promoter may be regulated chemically, for example, in response to the presence of a particular metabolite (e.g., lactose or tryptophan), a metal ion, a molecule secreted by a pathogen, or the like. A promoter may also be regulated physically, for example, in response to heat, cold, water stress, salt stress, oxygen concentration, illumination (including UV exposure), wounding, or the like.
Promoters that are useful to drive expression of the nucleotide sequences described herein are numerous and familiar to those skilled in the art. Suitable promoters include, but are not limited to, the following: T3 promoter, T7 promoter, iron promoter, and GAL1 promoter. Variants of these promoters are also contemplated. In another aspect, several promoters, either the same or different, can appear in the same device. The skilled artisan will be able to use site-directed mutagenesis and/or other mutagenesis techniques to modify the promoters to promote more efficient function. The promoter can be positioned, for example, from 10-100 nucleotides away from a ribosomal binding site. In one aspect, the promoter is positioned before the gene that expresses phosphoribulokmase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, TonB, or any combination thereof. In one aspect, the promoter is a GAL1 promoter. In another aspect, the GAL1 promoter is native to the plasmid used to create the vector. In another aspect, a GAL1 promoter is positioned before the gene that expresses phosphoribulokinase, a-actin, a heat shock protein, RuBisCO large subunit 1, luciferase, iron oxidase, TonB, or any combination thereof. In another aspect, the promoter is a GAL1 promoter obtained from or native to the pYES2 plasmid. In another aspect, the promoter is an iron promoter and is positioned before the gene that expresses iron oxidase.
In another aspect, the regulatory sequence is a terminator or stop sequence. As used herein, a terminator is a sequence of DNA that marks the end of a gene or operon to be transcribed. In a further aspect, the terminator is an intrinsic terminator or a Rho-dependent terminator. As used herein, an '‘intrinsic terminator” is a sequence wherein a hairpin structure can form in the nascent transcript and wherein the hairpin disrupts the mRNA/DNA/RNA polymerase complex. As used herein, a “Rho-dependent” transcription terminator requires a Rho factor protein complex to disrupt the mRNA/DNA/RNA polymerase complex. In one aspect, the terminator is a CYC1 terminator. In another aspect, multiple terminators can be included in the same DNA construct.
In a further aspect, the regulatory sequence includes both a promoter and a terminator or stop sequence. In a still further aspect, the regulatory sequence can include multiple promoters or terminators. Other regulatory elements, such as enhancers, are also contemplated. Enhancers may be located from about 1 to about 2,000 nucleotides in the 5' direction from the start codon of the DNA to be transcribed, or may be located 3' to the DNA to be transcribed. Enhancers may be “cis-acting,” that is, located on the same molecule of DNA as the gene whose expression they affect.
In certain aspects, the DNA construct can include a gene that expresses a reporter protein. The selection of the reporter protein can vary. For example, the reporter protein can be a yellow fluorescent protein, a red fluorescent protein, a green fluorescent protein, or a cyan fluorescent protein. The amount of fluorescence that is produced by the biological device can be correlated to the amount of DNA incorporated into the host cells. The fluorescence produced by the device can be detected and quantified using techniques known in the art. For example, spectrofluorometers are typically used to measure fluorescence. In one aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (4) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (5) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (6) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (7) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto. In another aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homolog)· thereto, (4) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (5) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (6) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (7) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (8) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
In one aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto,
(11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology' thereto, (14) a CYC1 terminator,
(15) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and
(16) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto. Figs. 1A and IB show linear and circular schematics of one embodiment of such a DNA construct. In one aspect, the DNA construct is SEQ ID NO. 8 or has at least 70%, 75%, 80%, 85%, 90%, or 95% homology thereto.
In another aspect, the DNA construct is, from 5' to 3', the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology' thereto, (11) a CYC1 terminator,
(12) a GAL1 promoter, (13) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (14) a CYC1 terminator, (15) a GAL1 promoter, (16) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (17) a CYC1 terminator, (18) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (19) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto. Figs. 2A and 2B show linear and circular schematics of one embodiment of such a DNA construct. In one aspect, the DNA construct is SEQ ID NO. 10 or has at least 70%, 75%, 80%, 85%, 90%, or 95% homology thereto.
The DNA construct described herein can be part of a vector. In one aspect, the vector is a plasmid, a phagemid, a cosmid, a yeast artificial chromosome, a bacterial artificial chromosome, a virus, a phage, or a transposon.
In general, plasmid vectors containing replicon and control sequences that are derived from species compatible with the host cell are used in connection with these hosts. Vectors capable of high levels of expression of recombinant genes and proteins are well known in the art. The vector ordinarily carries a replication origin as well as marking sequences that are capable of providing phenotypic selection in transformed cells. Plasmid vectors useful for the transformation of a variety of host cells are well known and are commercially available. Such vectors include, but are not limited to, pWLneo, pSV2CAT, pOG44, pXTl, pSG, pSVK3, pBSK, pBR322, pYES, pYES2, pBSKII, and pUC vectors.
Plasmids are double-stranded, autonomously-replicating, genetic elements that are not integrated into host cell chromosomes. Further, these genetic elements are usually not part of the host cell’s central metabolism. In bacteria, plasmids may range from 1 kilobase (kb) to over 200 kb. Plasmids can be engineered to encode a number of useful traits including the production of secondary metabolites, antibiotic resistance, the production of useful proteins, degradation of complex molecules and/or environmental toxins, and others. Plasmids have been the subject of much research in the field of genetic engineering, as plasmids are convenient expression vectors for foreign DNA in, for example, microorganisms. Plasmids generally contain regulatory elements such as promoters and terminators and also usually have independent replication origins. Ideally, plasmids will be present in multiple copies per host cell and will contain selectable markers (such as genes for antibiotic resistance) to allow the ordinarily skilled artisan to select host cells that have been successfully transfected with the plasmids (for example, by culturing the host cells in a medium containing the antibiotic).
In one aspect, the vector encodes a selection marker. In a further aspect, the selection marker is a gene that confers resistance to an antibiotic. In certain aspects, during fermentation of host cells transformed with the vector, the cells are contacted with the antibiotic. For example, the antibiotic may be included in the culture medium. Cells that have not been successfully transformed cannot survive in the presence of the antibiotic; only cells containing the vector that confers antibiotic resistance can survive. Optionally, only cells containing the vector to be expressed will be cultured, as this will result in the highest production efficiency of the desired gene products (e.g., proteins having a UV-protective effect). Cells that do not contain the vector would otherwise compete with transformed cells for resources. In one aspect, the antibiotic is tetracycline, neomycin, kanamycin, ampicillin, hygromycin, chloramphenicol, amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazid, methicillin, oxacillin, vancomycin, streptomycin, quinolines, rifampin, rifampicin, sulfonamides, cephalothin, erythromycin, gentamycin, penicillin, other commonly-used antibiotics, or a combination thereof.
In one aspect, when the vector is a plasmid, the plasmid can also contain a multiple cloning site or polylinker. In a further aspect, the polylinker contains recognition sites for multiple restriction enzymes. The polylinker can contain up to 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more than 20 recognition sites for restriction enzymes. Further, restriction sites may be added, disabled, or removed as required, using techniques known in the art. In one aspect, the plasmid contains restriction sites for any known restriction enzyme such as, for example, Hindlll, Kpnl, Sad, BamHI, BstXI, EcoRI, BsaBI, Notl, Xhol, Sphl, Sbal, Apal, Sail, Clal, EcoRV, Pstl, Smal, Xmal, Spel, Eagl, SacII, or any combination thereof. In a further aspect, the plasmid can contain more than one recognition site for the same restriction enzyme.
In one aspect, the restriction enzyme can cleave DNA at a palindromic or an asymmetrical restriction site. In a further aspect, the restriction enzyme cleaves DNA to leave blunt ends; in an alternative aspect, the restriction enzyme cleaves DNA to leave“sticky” or overhanging ends. In another aspect, the enzyme can cleave DNA a distance of from 20 bases to over 1000 bases away from the restriction site. A variety of restriction enzymes are commercially available and their recognition sequences, as well as instructions for use (e.g., amount of DNA needed, precise volumes of reagents, purification techniques, as well as information about salt concentration, pH, optimum temperature, incubation time, and the like) are made available by commercial enzyme suppliers.
In one aspect, a plasmid with a polylinker containing one or more restriction sites can be digested with one restriction enzyme and a nucleotide sequence of interest can be ligated into the plasmid using a commercially available DNA ligase enzyme. Several such enzymes are available, often as kits containing all reagents and instructions required for use. In another aspect, a plasmid with a polylinker containing two or more restriction sites can be simultaneously digested with two restriction enzymes and a nucleotide sequence of interest can be ligated into the plasmid using a DNA ligase enzyme. Using two restriction enzymes provides an asymmetric cut in the DNA, allowing for insertion of a nucleotide sequence of interest in a particular direction and/or on a particular strand of the double-stranded plasmid. Since RNA synthesis from a DNA template proceeds from 5' to 3', often starting just after a promoter, the order and direction of elements inserted into a plasmid is especially important. If a plasmid is to be simultaneously digested with multiple restriction enzymes, these enzymes must be compatible in terms of buffer, salt concentration, and other incubation parameters.
In some aspects, prior to ligation using a ligase enzyme, a plasmid that has been digested with a restriction enzyme is treated with an alkaline phosphatase enzyme to remove 5' terminal phosphate groups. This prevents self-ligation of the plasmid and thus facilitates ligation of heterologous nucleic acid fragments into the plasmid.
In one aspect, the nucleic acids (e.g., genes that express phosphoribulokinase, iron oxidase, and the like) used in the DNA constructs described herein can be amplified using the polymerase chain reaction (PCR) prior to being ligated into a plasmid or other vector. Typically, PCR-amplification techniques make use of primers or short, chemically-synthesized oligonucleotides that are complementary to regions on each respective strand flanking the DNA or nucleotide sequence to be amplified. A person having ordinary skill in the art will be able to design or choose primers based on the desired experimental conditions. In general, primers should be designed to provide for efficient and faithful replication of the target nucleic acids. Two primers are required for the amplification of each gene, one for the sense strand (that is, the strand containing the gene of interest) and one for the antisense strand (that is, the strand complementary to the gene of interest). Pairs of primers should have similar melting temperatures that are close to the PCR reaction’s annealing temperature. In order to facilitate the PCR reaction, the following features should be avoided in primers: mononucleotide repeats, complementarity with other primers in the mixture, self-complementarity, and internal hairpins and/or loops. Methods of primer design are known in the art; additionally, computer programs exist that can assist the ordinarily skilled practitioner with primer design. Primers can optionally incorporate restriction enzyme recognition sites at their 5' ends to assist in later ligation into plasmids or other vectors.
PCR can be carried out using purified DNA, unpurified DNA that has been integrated into a vector, or unpurified genomic DNA. The process for amplifying target DNA using PCR consists of introducing an excess of two primers having the characteristics described above to a mixture containing the sequence to be amplified, followed by a series of thermal cycles in the presence of a heat-tolerant or thermophilic DNA polymerase, such as, for example, any of Taq, Pfu, Pwo, Tfl, rTth, Tli, or Tma polymerases. A PCR“cycle” involves denaturation of the DNA through heating, followed by annealing of the primers to the target DNA, followed by extension of the primers using the thermophilic DNA polymerase and a supply of deoxynucleotide triphosphates (i.e., dCTP, dATP, dGTP, and TTP), along with buffers, salts, and other reagents as needed. In one aspect, the DNA segments created by primer extension during the PCR process can serve as templates for additional PCR cycles. Many PCR cycles can be performed to generate a large concentration of target DNA or gene. PCR can optionally be performed in a device or machine with programmable temperature cycles for denaturation, annealing, and extension steps. Further, PCR can be performed on multiple genes simultaneously in the same reaction vessel or microcentrifuge tube since the primers chosen will be specific to selected genes. PCR products can be purified by techniques known in the art such as, for example, gel electrophoresis followed by extraction from the gel using commercial kits and reagents.
In a further aspect, the vector can include an origin of replication, allowing it to use the host cell’s replication machinery to create copies of itself.
As used herein,“operably linked” refers to the association of nucleic acid sequences on a single nucleic acid fragment so that the function of one affects the function of another. For example, if sequences for multiple genes are inserted into a single plasmid, their expression may be operably linked. Alternatively, a promoter is said to be operably linked with a coding sequence when it is capable of affecting the expression of the coding sequence.
As used herein,“expression” refers to transcription and/or accumulation of an mRNA derived from a gene or DNA fragment. Expression may also be used to refer to translation of mRNA into a peptide, polypeptide, or protein.
Phosphoribulokinase (PRK) is an enzyme essential to photosynthesis. PRK catalyzes phosphorylation of ribulose 5 -phosphate into ribulose 1,5-bisphosphate. In one aspect, the DNA constructs disclosed herein include a gene that expresses PRK. In a further aspect, the gene that expresses PRK is isolated from a bacterium, a cyanobacterium, an amoeboid organism, or another microorganism. In a still further aspect, the microorganism is a species from one or more of the following genera: Acidithiobacillus, Pseudanabaena, Nitrosomonas, Prochlorococcus, Paulinella, Halorhodospira, Sulfurifemla, Thioalkalivibrio, Halothiobacillus, Sedimenticola, Methylocaldium, Callionella, Thioflavicoccus, Ectothiorhodospira, Glaciecola, Synechococcus, Acidihalobacter, Sulfuricella, Sideroxydans, Thiolapillus, Allochromatium, or another microbial genus. In a further aspect, the gene that expresses PRK has SEQ ID NO. 1 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
Other sequences expressing phosphoribulokinase or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, the gene that expresses phosphoribulokinase is isolated from Acidithiobacillus ferroxidans ATCC 23270 (GI number CP001219.1) and produces a protein that can be identified by the GI number ACK78673.1 in the GenBank database. In one aspect, sequences useful herein include those with the GI numbers listed in Table 1 :
Figure imgf000021_0001
Figure imgf000022_0001
Figure imgf000023_0001
Actin is a protein found in almost all eukaryotic cells and functions in both structural roles (e.g., in the cytoskeleton) and functional roles (e.g, as part of the apparatus that causes muscle cells to contract). Numerous forms of actin have been identified. As an example, a-actin is a form of actin that is found in the contractile apparatus of muscle cells. In one aspect, the DNA constructs disclosed herein include a gene that expresses a-actin. In another aspect, the gene that expresses a-actin is isolated from a fish such as, for example, a coelacanth, a common carp, a Sinocyclocheilus species, a pupfish, a Nothobranchius species, a char, a swordtail, a Misgurnus species, a barramundi, a Poecilia species, a damselfish, a rainbow trout, a Maylandia species, a clownfish, a piranha, a zebrafish, or an Atlantic salmon. In another aspect, the gene that expresses a-actin is isolated from an amphibian such as, for example, the African clawed frog. In an alternative aspect, the gene that expresses a-actin is isolated from an invertebrate such as, for example, a rotifer. In still another aspect, the gene that expresses a-actin is isolated from a mammal such as, for example, a human. In a further aspect, the gene that expresses a-actin has SEQ ID NO. 2 or at least 70% homology thereto, at least 75% homolog}7 thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
Other sequences expressing a-actin or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, the gene that expresses a-actin is isolated from Homo sapiens (GI number J00068.1) and produces a protein that can be identified by the GI number AAB59376.1 in the GenBank database. In one aspect, sequences useful herein include those with the GI numbers listed in Table 2:
Figure imgf000024_0001
Figure imgf000025_0001
Figure imgf000026_0001
Figure imgf000027_0001
In one aspect, the gene that expresses a heat shock protein is isolated from yeast. In one aspect, the yeast species is, for example, Saccharomyces cerevisiae. In one aspect, the S. cerevisiae is a strain of yeast such as, for example, S288C, ySR127, YJM1355, YJM453, YJM1202, YJM326, YJM1526, YJM470, YJM456, YJM1387,
YJM682, or another commonly-used strain. In a further aspect, the gene that expresses a heat shock protein is HSP70 and has SEQ ID NO. 3 or at least 70% homology thereof, at least 75% homology thereof, at least 80% homology thereof, at least 85% homology thereof, at least 90% homology thereof, or at least 95% homology thereof. In one aspect, the gene that expresses a heat shock protein is isolated from Saccharomyces cerevisiae and can be found in GenBank with accession number XI 3713.
Other sequences expressing heat shock proteins or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, sequences useful herein include those with the GI numbers listed in Table 3.
Figure imgf000027_0002
Figure imgf000028_0001
Figure imgf000029_0001
RuBisCO is a an enzyme involved in the fixation of atmospheric carbon by plants. RuBisCO catalyzes the carboxylation of ribulose 1,5-bisphosphate and includes two types of subunits, a large chain and a small chain. In one aspect, the DNA constmcts disclosed herein include a gene that expresses a RuBisCO large subunit. In a further aspect, the gene that expresses a RuBisCO large subunit is isolated from the chloroplasts (plastids) of an alga or marine or freshwater microorganism. In a still further aspect, the gene that expresses a RuBisCO large subunit is isolated from one of the following organisms: Guillardia theta , a Storeatula species, a Rhodomonas species, a Teleaulax species, Hanusia phi , a Cryptomonas species, a Xanthonema species, a Botrydium species, a Bumileria species, an Ophiocytium species, or another marine or freshwater alga or microorganism. In a still further aspect, the gene that expresses RuBisCO large subunit has SEQ ID NO. 4 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto. Other sequences expressing the RuBisCO large subunit or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, the gene that expresses RuBisCO large subunit is isolated from Acidithiobacillus ferroxidans (GI number 226736654) and produces a protein that can be identified by the accession number P0C916.1 in the UmProt database. In one aspect, sequences useful herein include those with the GI numbers listed in Table 4:
Figure imgf000030_0001
Figure imgf000031_0001
Figure imgf000032_0001
Figure imgf000033_0001
A luciferase is an oxidative enzyme that produces bioluminescence. In one aspect, luciferase genes are found already incorporated in a variety of vectors used in biotechnology. In another aspect, the DNA constructs disclosed herein can include a gene that expresses a luciferase. In a further aspect, the gene that expresses luciferase has SEQ ID NO. 5 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto.
Other sequences expressing luciferase or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, the gene that expresses luciferase (GI number MG687277.1) is already present in many cloning vectors and produces a protein that can be identified by the GI number AWK49539.1 in the GenBank database. In one aspect, sequences useful herein include those with the GI numbers listed in Table 5:
Figure imgf000033_0002
Figure imgf000034_0001
Figure imgf000035_0001
In one aspect, the gene that expresses iron oxidase is isolated from a yeast such as, for example, Komagataella phaffli (also known as Pichia pastoris). In another aspect, the gene that expresses iron oxidase is isolated from a bacterium of the Acidithiobacillus genus such as, for example, A. ferrivorans or ferrooxidans . In still another aspect, the gene that expresses iron oxidase is isolated from an insect such as a parasitic wasp or a fruit fly (e.g., Drosophila species D. virilis, D. serrata, D. miranda, D. pseudoobscura, D. willistoni, D. mojavensis, D. erecta, D. persimilis, D. rhopaloa, D. eugracilis, D. biarmipes, or D. grimshawi). In a different aspect, the gene that expresses iron oxidase is isolated from an Apicomplexan parasite such as, for example, Eimeria necatrix. E. mitis, or E. maxima In still another aspect, the gene that expresses iron oxidase is isolated from a fungus. In a further aspect, the gene that expresses iron oxidase has SEQ ID NO. 7 or at least 70% homology thereof, at least 75% homology thereof, at least 80% homology thereof, at least 85% homology thereof, at least 90% homology thereof, or at least 95% homology thereof. In a still further aspect, the gene that expresses iron oxidase is a longer sequence that incorporates SEQ ID NO. 10. In one aspect, the gene that expresses iron oxidase can be isolated from Acidithiobacillus ferrivorans and can be found in GenBank with accession number AEM49324.1.
Other sequences expressing iron oxidase or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, sequences useful herein include those with the GI numbers listed in Table 6.
Figure imgf000036_0001
Figure imgf000037_0001
Figure imgf000038_0001
In one aspect, the gene that expresses TonB is isolated from a bacterium. In a further aspect, the bacterium is a Pseudomonas species such as, for example, P. entomophila, P. sp. CCOS191, P. putida, P. mosselii, P. sp. DRA525, P. sp. FGI182, P. sp. JY-Q, P. plecoglossicida, P. sp. VLB 120, P. fulva, P. sp. URM017WK12:I11, P. parafulva, P. syringae, P. frederiksbergensis, P. fluorescens, P. asplenii, or P. fuscovaginae. In an alternative aspect, the bacterium is Enterococcus faecalis. In a further aspect, the gene that expresses TonB has SEQ ID NO. 9 or at least 70% homology thereto, at least 75% homology thereto, at least 80% homology thereto, at least 85% homology thereto, at least 90% homology thereto, or at least 95% homology thereto. In one aspect, the gene that expresses TonB is isolated from P. entomophila and can be found in GenBank with GI number CT573326.1
Other sequences expressing TonB or related or homologous genes can be identified in a database such as, for example, GenBank. In one aspect, sequences useful herein include those with the GI numbers listed in Table 7:
Figure imgf000039_0001
Figure imgf000040_0001
Exemplary methods for producing the DNA constructs described herein are provided in the Examples. Restriction enzymes and purification techniques known in the art can be used to prepare the DNA constructs. After the vector incorporating the DNA construct has been produced, it can be incorporated into host cells using the methods described below.
Biological Devices
In one aspect, a“biological device” is formed when a microbial cell is transfected with the DNA construct described herein. The biological devices are generally composed of microbial host cells, where the host cells are transformed with a DNA construct described herein.
In one aspect, the DNA construct is carried by the expression vector into the cell and is separate from the host cell’s genome. In another aspect, the DNA construct is incorporated into the host cell’s genome. In still another aspect, incorporation of the DNA construct into the host cell enables the host cell to produce UV-protective proteins.
The host cells as referred to herein include their progeny, which are any and all subsequent generations formed by cell division. It is understood that not all progeny may be identical due to deliberate or inadvertent mutations. A host cell may be“transfected” or“transformed,” which refers to a process by which exogenous nucleic acid is transferred or introduced into the host cell. A transformed cell includes the primary subject cell and its progeny. The host cells can be naturally- occurring cells or“recombinant” cells. Recombinant cells are distinguishable from naturally-occurring cells in that naturally-occurring cells do not contain heterologous nucleic acid sequences introduced using molecular biology techniques. In one aspect, the host cell is a prokaryotic cell such as, for example, Escherichia coli. In other aspects, the host cell is a yeast such as, for example, Saccharomyces cerevisiae. Host cells transformed with the DNA construct described herein are referred to as biological devices.
The DNA construct is first delivered into the host cell. This delivery can be accomplished in vitro using well-developed laboratory procedures for transforming cell lines. Transformation of bacterial cell lines can be achieved using a variety of techniques. One method involves calcium chloride. The exposure to the calcium ions renders the cells able to take up the DNA construct. Another method is electroporation. In this technique, a high-voltage electric field is applied briefly to cells, producing transient holes in the cell membrane through which the vector containing the DNA construct enters. Exemplary procedures for transforming yeast and bacteria with specific DNA are provided in the Examples. In certain aspects, two or more types of DNA can be incorporated into the host cells.
Once the DNA construct has been incorporated into the host cell, the cells are cultured such that the cells multiply. A satisfactory microbiological culture contains available sources of hydrogen donors and acceptors, carbon, nitrogen, sulfur, phosphorus, inorganic salts, and, in certain cases, vitamins or other growth-promoting substances. The addition of peptone provides a readily available source of nitrogen and carbon. A variety of other carbon sources are contemplated, including, but not limited to, monosaccharides such as glucose and fructose, disaccharides such as lactose and sucrose, oligosaccharides, polysaccharides such as starch, and mixtures thereof. Unpurified mixtures extracted from feedstocks are also contemplated as carbon sources, as are one-carbon substrates such as carbon dioxide and/or methanol in the cases of compatible organisms. The carbon source utilized is limited only by the particular organism being used.
Furthermore, the use of different media results in different growth rates and different stationary phase densities. Protein production is highest when cells are in stationary phase. A rich media results in a short doubling time and higher cell density at stationary phase. Minimal media results in slow growth and low final cell densities. Efficient agitation and aeration increase final cell densities. A skilled artisan will be able to determine which type of media is best suited to culture a particular species and/or strain of host cell.
Culturing or fermenting host cells may be accomplished by any technique known in the art. In one aspect, batch fermentation can be conducted. In batch fermentation, the composition of the culture medium is set at the beginning of culturing and the system is closed to future artificial alterations. In some aspects, a limited form of batch fermentation can be carried out, wherein factors such as oxygen concentration and pH are manipulated, but additional carbon is not added. Continuous fermentation methods are also contemplated. In continuous fermentation, equal amounts of a defined medium are continuously added to and removed from a bioreactor. In other aspects, microbial host cells are immobilized on a substrate. Fermentation can be carried out on any scale and may include methods in which literal“fermentation” is earned out as well as other culture methods that are non- fermentative.
UV-Resistant Microbes
In one aspect, a yeast or bacterium can be engineered to be UV-resistant by transforming or transfecting the yeast or bacteria with a nucleic acid able to express a protein up-regulated by UV exposure. In one aspect, the nucleic acids can be under the control of a constitutive promoter. In another aspect, the nucleic acids can be under control of a UV-inducible promoter. In some aspects, when the yeast or bacterium needs to perform another function, such as fermentation, the nucleic acids can be under control of UV-inducible promoters so as not to impede the other function when UV protection is not required.
In another aspect, UV-resistant microbes can be used in fermentation processes, such as the production of alcohol or fuel ethanol, or in the production of chemical and pharmaceutical products, including biological drug products.
Preparation of UV-Protective Extracts
In one aspect, provided herein are UV-protective extracts produced by the biological devices disclosed herein. In one aspect, the present UV-protective microbial extracts are able to wholly or partially block the passage of UV radiation. The extent to which UV radiation is blocked can depend on a variety of factors including the particular microbe used, the amount of extract applied, and the formulation of the extract.
In a further aspect, the UV protective extract can be prepared by exposing a culture of a biological device such as those disclosed herein to UV radiation, then extracting components from the culture. In one aspect, the components are extracted via centrifugation. In another aspect, the culture of the biological device is applied to a subject or surface after UV irradiation and without extraction. The UV radiation can be of any wavelength, but in one aspect, it can be shortwave radiation (i.e., ultraviolet C having a wavelength of approximately 100 to 280 nm), medium wave radiation (i.e., ultraviolet B, having a wavelength of approximately 280 to 315 nm), or longwave radiation (i.e., ultraviolet A having a wavelength of 315 to 400 nm). In one aspect, the culture of the biological device can be irradiated with a 254 nm shortwave UV source. In another aspect, the culture of the biological device can be irradiated with a 365 nm longwave UV source. In still another aspect, the culture of the biological device can be irradiated with both a 254 nm and a 365 nm UV source. In yet another aspect, the culture of the biological device can be irradiated with a natural UV source such as, for example, the sun, providing a range of wavelengths for irradiation.
In one aspect, culture of the biological device may proceed until the culture is dense, but not so dense as to trigger deleterious responses (e.g., a response triggered by lack of a food source) and not so dense as to prevent UV radiation from reaching a substantial portion of cells in the culture. Once the desired culture density has been reached, the culture can then be irradiated with UV radiation. Prior to irradiation, in one aspect, the culture is transferred to one or more vessels designed to allow a substantial portion of the biological device to be irradiated.
In one aspect, the irradiation continues for the length of time needed to induce a radiation response in the biological devices and ends at or before a time at which a substantial portion of the biological devices are fatally irradiated. In a further aspect, the extract can be collected after exposing a culture of a biological device to UV irradiation for a period of time ranging from about 12 hours to about 72 hours, or about 12, 24, 36, 48, 60, or 72 hours. In an alternative aspect, the biological devices may continue to be cultured for a time after UV exposure at least sufficient to allow some radiation response in the biological devices. In a further aspect, if irradiation did not cause death of a substantial portion of the organisms in culture, culture may continue until the radiation response has ceased in a majority of the organisms.
In one aspect, radiation response can include upregulation of at least one of the following: a phosphoribulokinase, an a-actin, a heat shock protein, a RuBisCO large subunit, a luciferase, an iron oxidase, or a TonB.
It will be understood that up-regulation or down-regulation of one or more of these proteins may not be directly responsible for UV-protective properties, such that increased or decreased amounts of these proteins in the extract may have little or no effect on the UV-protective properties of the extract. Further in this aspect, up- regulation or down-regulation of one of these proteins may have downstream effects that ultimately produce a UV-protective effect. In an alternative aspect, up-regulation or down-regulation of one or more of these proteins may be directly responsible for the UV-protective properties of the extract.
In one aspect, the extract is prepared in a manner able to isolate at least one UV-protective component. In some aspects, the extract can include centrifuged bacterial or yeast components. In one aspect, the extract is formulated at a variety of concentrations in any acceptable carrier to allow its use for a particular purpose. In some aspects, the extract is formulated in an evaporable carrier, such as water or alcohol, to allow the extract to dry on the surface of the material to be protected from UV radiation. In an alternative aspect, the extract is formulated in a lotion, gel, oil, or cream for application to human or animal skin.
In one aspect, the extract can be prepared by centrifuging the culture of biological devices in a manner able to precipitate most proteins, including UV- resistant and/or UV-protective proteins, then discarding the supernatant while retaining the pellet as the extract. Further in this aspect, the pellet can be used as-is or dried. Still further in this aspect, the pelleted material can be diluted to a given concentration using any acceptable carrier, such as water, alcohol, lotion, gel, oil, or cream. In one aspect, the carrier is non-denaturing. In an alternative aspect, the carrier is denaturing. In a still further aspect, the carrier also includes materials to inhibit further bacterial growth and/or protein degradation.
In an alternative aspect, the supernatant contains UV-protective compounds and is not discarded. In yet another aspect, the UV-protective and/or UV -resistant compounds and proteins are extracted by another method known in the art for isolating proteins and/or metabolites.
In a further aspect, the biological device culture may not be pelletized but instead may be killed, for example by lysis or exposure to lethal levels of UV radiation, and the culture medium can be used as-is or in an evaporated form. Further in this aspect, materials to inhibit further microorganism growth and/or protein degradation can also be introduced.
In another aspect, cells from any of the cultures described above can be isolated with or without extraction and/or lysis and used in wet or dry form.
In another aspect, isolated proteins from the biological device culture can be used in place of a more general extract to produce a UV-protective effect. Such proteins can be isolated by techniques known in the art.
Applications of UV-Protective Extracts
The extracts produced from the biological devices described herein may be applied to any material that may benefit from a reduction in UV radiation. The exact formulation of the extract plus any carriers can be adjusted based on the desired use. In one aspect, the extract is formulated with only non-toxic components if it is to be used on a human or animal or with another microorganism, such as in a fermentation process or on an agricultural product. In another aspect, the extract can be mixed with other substances to provide UV-protective properties to the overall composition. In still another aspect, if coated on the material to be protected, the extract itself can be covered with a further protective coating to project, for example, against mechanical wear and damage.
In the case when the extract is applied to the surface of an article, it can be applied using techniques known in the art such spraying or coating. In other aspects, the extract can be intimately mixed with a substance or material that ultimately produces the article. For example, the extract can be mixed with molten glass so that the extract is dispersed throughout the final glass product. In one aspect, the extract is formulated or applied in such a manner as to block approximately 50%, 60%, 70%, 80%, 90%, 95%, or 99% of the UV radiation that encounters the extract, where any value can be a lower and upper end-point of a range (e.g., 60% to 95%). In a further aspect, the extract can also be formulated to block these percentages of particular UV wavelengths, or, more generally, to block these percentages of UVA, UVB, or UVC radiation.
Extracts according to the present disclosure can be used for a variety of purposes. These purposes include, but are not limited to, the following:
1. blocking UV radiation or other types of radiation;
2. protecting human skin against damage and/or skin cancer induced by UV radiation or other types of radiation;
3. protecting against side effects of radiation used in cancer treatments;
4. protecting animals from deleterious effects of UV radiation or other radiation;
5. protecting plastic, fiberglass, glass, rubber, or other solid surfaces from UV radiation or other radiation;
6. providing a UV radiation screen or screen for other types of radiation;
7. protecting astronauts and/or other persons or organisms as well as equipment during space trips;
8. enhancement of industrial fermentation processes or other processes requiring energy by allowing the use of UV radiation in connection with the process to supply additional energy and thus to increase the ultimate energy -requiring output of the cells without substantially killing the fermenting organism;
9. protection of experimentation, fermentation, biochemical, and/or biological processes under the presence of UV radiation, for example in extraterrestrial conditions such as on the moon or Mars; and 10. protection of agricultural plants, particularly agricultural plants in which the revenue-producing part of the plant is above ground, such as fruits, vine vegetables, beans and peas, and leaf vegetables.
In one particular embodiment, an extract prepared according to the procedure described above, can be applied to an agricultural plant. In one aspect, the plant can be one that produces fruit or vegetable, such as, for example, a watermelon or a tomato. Further in this aspect, the extract can be applied during at least a part of the plant’s growth to increase the amounts of one or more nutrients of the fruit or vegetable, such as a vitamin, mineral, or other recommended dietary component. In one specific aspect, the amount of lycopene can be increased (which may be accompanied by a decrease in carotene or other less-valuable nutrients formed by competing pathways). In another aspect, the amount of a flavor-enhancing component, such as glucose, can be increased. Further in this aspect, an increase in glucose can help protect against water loss.
In one aspect, the extract can be applied for about 25%, 50%, 75%, 90%, 95%, or 99% of the fruit or vegetable’s on-plant life, where the on-plant life includes the time span from the formation of a separate body that will constitute the fruit or vegetable (in some aspects, excepting flowers) until the fruit or vegetable is harvested. In one aspect, the extract can be first applied when the fruit or vegetable is sufficiently large to no longer be substantially protected from UV radiation by leaves. In another aspect, the extract can first be applied five days, one week, or two weeks prior to harvest. Further in this aspect, application at this later stage can be particularly useful with fruits or vegetables in which an increase in a nutrient or flavor-enhancing component can be obtained by protecting the fruit or vegetable from UV radiation later in its on-plant life.
In one aspect, the extract can be applied once or multiple times to each fruit or vegetable. In another aspect, it can be applied weekly, or it can be reapplied after the fruit or vegetable is exposed to rain or after a turning process. In another aspect, the agricultural plant can be another food crop that grows above ground and is exposed to natural UY radiation, wherein the agricultural product produced can be a fruit, leaf, seed, flower, grain, nut, stem, vegetable, or mushroom.
In another aspect, it is desirable for agricultural plants that do not produce parts typically consumed by humans to be protected from UV irradiation. In a further aspect, these other agricultural plants can includes sources of fibers such as, for example, cotton and linen (flax), of cork, of wood or lumber, of feedstocks for producing ethanol or biodiesel (including, but not limited to, sugar beet, sugarcane, cassava, sorghum, com, wheat, oil palm, coconut, rapeseed, peanut, sunflower, soybean, and the like), of animal feedstocks or fodder, or of decorative or horticultural plants.
In one aspect, any part of the plant can be coated, including, but not limited to, the part of the plant that is collected during harvest. In an alternative aspect, the harvested part of the plant is not coated, but another part can be coated with the extracts disclosed herein. In addition to the aspects already described, in one aspect, coating a plant with the extracts described herein can prolong the life of the plant, increase production capacity of a desired product, can increase the growth rate of the plant relative to an untreated plant of the same type, can increase production of a desired metabolite that might otherwise decrease due to UV-mduced stress, can increase yield of a crop of such plants, and the like.
In a further aspect, application can be accomplished with a commercial sprayer. In another aspect, application can be only on the upper portions of the fruit or vegetable, which are exposed to substantially greater amounts of UV radiation than the lower portions of the fruit or vegetable.
In another aspect, provided herein is a pharmaceutical composition containing the extracts produced by the biological devices described herein. In one aspect, the pharmaceutical composition can be applied to a subject, wherein the subject is exposed to radiation. In one aspect, the radiation is applied as a strategy to treat cancer. In another aspect, the pharmaceutical composition is used to prevent radiation-induced cellular and DNA damage. In another aspect, dosage ranges of the extract in the pharmaceutical composition can vary from 0.01 g extract/mL of pharmaceutical composition to 1 g extract/mL of pharmaceutical composition, or can be 0.01, 0.02, 0.025, 0.05, 0.075, or 1 g extract/mL of pharmaceutical composition. In an alternative aspect, provided herein is a cosmetic composition containing the extracts produced by the biological devices described herein. Further in this aspect, the cosmetic composition can be a cleanser, lotion, cream, shampoo, hair treatment, makeup, lip treatment, nail treatment, or related composition. In still a further aspect, the compositions containing the extracts can have both pharmaceutical and cosmetic applications. In yet another aspect, the compositions containing the extracts can be used in veterinary medicine.
The cosmetic compositions can be formulated in any physiologically acceptable medium typically used to formulate topical compositions. The cosmetic compositions can be in any galenic form conventionally used for a topical application such as, for example, in the form of dispersions of aqueous gel or lotion type, emulsions of liquid or semi-liquid consistency of the milk type, obtained by dispersing a fatty phase in an aqueous phase (O/W) or vice versa (W/O), or suspensions or emulsions of soft, semi-solid or solid consistency of the cream or gel type, or alternatively multiple emulsions (W/O/VV or O/W/O), microemulsions, vesicular dispersions of ionic and/or non-ionic type, or wax/aqueous phase dispersions. These compositions are prepared according to the usual methods.
The cosmetic compositions can also contain one or more additives commonly used in the cosmetics field, such as emulsifiers, preservatives, sequestering agents, fragrances, thickeners, oils, waxes or film-forming polymers. In one aspect, in any of the above scenarios, the pharmaceutical, cosmetic, or veterinary composition also includes additional UV-protective compounds or UV -blocking agents such as, for example, zinc oxide, titanium dioxide, carotenoids, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or a combination thereof.
In one aspect, the composition is a sunscreen. A sunscreen can be formulated with any of the extracts produced herein. In addition to the extract, the sunscreen in certain aspects can be formulated with one or more UV -protective compounds or UV- blocking agents listed above. The sunscreen can be formulated as a paste, lotion, cream, aerosol, or other suitable formulations for topical use. In certain aspects, the sunscreen can be formulated as a transparent composition.
In one aspect, the cosmetic composition can be a film composed of the extracts produced herein that can be directly applied to the skin. For example, the film can be composed of a biocompatible material such as a protein or oligonucleotide, where the extract is coated on one or more surfaces of the film or, in the alternative dispersed throughout the film. For example, the film can be composed of DNA. In this application, the films can be used as a wound covering and provide protection from UV photodamage. The films can also be prepared so that they are optically transparent. Here, it is possible to view the wound without removing the covering and exposing the wound. The films can also include other components useful in cosmetic applications such as, for example, compounds to prevent or reduce wrinkles.
In one aspect, the pharmaceutical, cosmetic, or veterinary compositions described herein are applied to subjects. In one aspect, the subject is a human, another mammal, or a bird. In a further aspect, the mammal is a pet such as a dog or cat or is livestock such as horses, goats, cattle, sheep, and the like. In an alternative aspect, the bird is a pet bird or is poultry such as, for example, a chicken or turkey. In any of these aspects, the compositions can be applied to skin, fur, feathers, wool, hooves, horns, or hair as appropriate and applicable.
In another aspect, provided herein is a paint, dye, stain, or ink containing the UV-protective and/or UV-resistant extract disclosed herein. In one aspect, there are several benefits to having a paint that is resistant to UV irradiation. In a further aspect, imparting UV resistance to a paint slows or stops photodegradation, bleaching, or color fading. In another aspect, a paint with UV resistance prevents chemical modification of exposed paint surfaces. Further in this aspect, chemical modification of exposed paint surfaces includes change in finish, structural changes in binders, flaking, chipping, and the like. In one aspect, the paint provided herein resists these changes.
In still another aspect, provided herein is an article coated with the extracts disclosed herein. In one aspect, the article is made of glass, plastic, metal, wood, fabric, or any combination thereof. In one aspect, the article is a construction material such as, for example, steel, concrete or cement, brick, wood, window or door glass, fiberglass, siding, wallboard, a floonng material, masonry, mortar, grout, stone, artificial stone, stucco, shingles, roofing materials, and the like. In an alternative aspect, the material is an aeronautical or aerospace material such as, for example, the metal or metal alloy body of an aircraft or spacecraft, paint on the body of an aircraft or spacecraft, glass windows on an aircraft or spacecraft, carbon fiber composite, titanium or aluminum, a ceramic heat absorbing tile, and the like. In still another aspect, the article is a fabric article such as, for example, clothing, drapes, outdoor upholstery, a tent or outdoor pavilion, a flag or banner, or the like. In another aspect, the extract can be applied to the article to fine artwork, solid pieces (e.g., vases), and historical documents in order to preserve them. In another aspect, the extract can be applied to outdoor signs such as highway billboards and advertising.
In other aspects, the extract can be incorporated within or throughout the article. In one aspect, the extract can be mixed with molten glass to produce glass article that are UV resistant such as, for example, sunglasses, car windshields, window glass, and eyeglasses. In another aspect, the glass article can be a bottle for storing a beverage or food container in order to increase the shelf-life of the beverage or food. It is contemplated that the extract can be applied externally to the glass articles as well.
In another aspect, the extract can be mixed with fiberglass or plastics in order to reduce negative effects to aircraft, watercraft, boats, jet skis, decking, house siding, motor homes, sunroofs, and moon roofs that are constantly exposed to UV radiation. It is contemplated that the extract can be applied externally to the fiberglass or plastic articles as well. In another aspect, the extract can be mixed with rubber, silicon, or latex used to make a variety of articles such as water hoses, tires, and the like. It is contemplated that the extract can be applied externally to the rubber, silicone, or latex articles as well.
In another aspect, the extract can be mixed with foams used to make a variety of articles such as automotive dashboard padding, seat cushions, and the like. It is contemplated that the extract can be applied externally to the foam articles as well.
In another aspect, the extracts described herein can be incorporated into an optical film. In one aspect, the extract is applied to at least one surface of the film. In another aspect, the extract can be dispersed throughout the film. The film can be transparent, translucent or opaque. The film can be composed of, but not limited to, polyolefin resin, such as polyethylene (PE) or polypropylene (PP); polyester resin, such as polyethylene terephthalate (PET); polyacrylate resin, such as polymethyl (meth (acrylate (PMMA); polycarbonate resin; polyurethane resin or a mixture thereof. The optical film can be applied to any substrate where it is desirable to reduce or prevent UV exposure or damage. For example, the optical film can be applied to windows to reduce or prevent UV radiation from entering a structure (e.g., building, vehicle, etc.).
In another aspect, provided herein is a method of reducing or preventing the exposure of an item to UV radiation by applying the extracts described herein to the item or incorporating the extract within/throughout the article. Further in this aspect, “reducing” is defined relative to an untreated control. That is, if two like items are exposed to equal amounts of UV radiation for an equal amount of time, but one has been treated with the UV -resistant extracts and the other has not, and some objective response is measured (e.g., color fading, structural degradation, plant size or yield, etc.), the treated item will appear to have been exposed to a lower amount of UV (for example, the color of the treated item will have faded less and will remain closer to the original, or a treated plant will appear larger and more vigorous and will have a greater yield, etc.). In some aspects, treatment with the extracts disclosed herein will prevent UV exposure from occurring. As used herein,“prevent” indicates that a treated item will not be affected, changed, or altered by UV exposure.
In one aspect, the extract blocks from 50% to 100% of UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of UV radiation from contacting the item. In another aspect, the extract blocks from 50% to 100% of longwave UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of longwave UV radiation from contacting the item. In one aspect, the extract blocks from 50% to 100% of shortwave UV radiation from contacting the item. Further in this aspect, the extract blocks at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% of shortwave UV radiation from contacting the item.
Depending upon the application, the extract can prevent or reduce damage cause by UV radiation from limited to extended periods of time. By varying the amount of extract that is applied as well as the number of times the extract is applied, the degree of UV protection can be varied. In certain aspects, it may be desirable for the article to be protected from UV damage for a short period of time then subsequently biodegrade.
In another aspect, the extracts produced herein can be used to reduce or prevent the growth of barnacles on boats and other water vehicles. In one aspect, the extract can be admixed with a paint that is typically applied to water vehicles, where the paint also includes chitosan. In one aspect, the chitosan can be acetylated to a specific degree of acetylation in order to enhance tissue growth during culturing as well as metabolite production. In one aspect, the chitosan is from 60% to about 100%, 70% to 90%, 75% to 85%, or about 80% acetylated. In one aspect, chitosan isolated from the shells of crab, shrimp, lobster, and/or krill is useful herein. The molecular weight of the chitosan can vary, as well. For example, the chitosan comprises about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units and/or N-acetylglucosamine units. In another aspect, the chitosan includes 5 to 7 glucosamine units and/or N-acetylglucosamine units.
UV-Resistant Plants
In one aspect, provided herein is a plant that is resistant to UV radiation. As used herein,“plant” is used in a broad sense to include, for example, any species of woody, ornamental, crop, cereal, fruit, or vegetable plant, as well as photosynthetic green algae. “Plant” also refers to a plurality of plant cells that are differentiated into a structure that is present at any stage of a plant’s development. Such structures include, but are not limited to, fruits, shoots, stems, leaves, flower petals, roots, tubers, corms, bulbs, seeds, gametes, cotyledons, hypocotyls, radicles, embryos, gametophytes, tumors, and the like. “Plant cell,”“plant cells,” or“plant tissue” as used herein refers to differentiated and undifferentiated tissues of plants including those present in any of the tissues described above, as well as to cells in culture such as, for example, single cells, protoplasts, embryos, calluses, etc. It is contemplated that any cell from which a fertile plant can be regenerated is useful as a recipient cell. Type I, Type II, and Type III callus can be initiated from tissue sources including, but not limited to, immature embryos, immature inflorescences, seedling apical meristems, microspores, and the like. Those cells that are capable of proliferating as callus are also useful herein. Methods for growing plant cells are known in the art (see US Patent No. 7,919,679).
In one aspect, plant calluses grown from 2 to 4 weeks can be used herein. The plant cells can be derived from plants varying in age. The plant cells can be contacted with the biological device or extracts produced therefrom in a number of different ways. In one aspect, the device or extract can be added to a medium containing the plant cells. In another aspect, the device or extract can be injected into the plant cells via syringe. The amount of device and the duration of exposure to the device can vary as well. In one aspect, the concentration of the device is about 103, 104, 105, 106, 107, 108, or 109 cells/mL of water. In one aspect, when the host cell is a bacterium, the concentration of the device is 106. In another aspect, when the host cell is yeast, the concentration of the device is 109. Different volumes of the biological device can be used as well, ranging from 5 pL to 500 pL.
In certain aspects, any of the biological devices described above can be used in combination with a polysaccharide to enhance one or more physiological properties of the plant. In one aspect, the plant cells are first contacted with the biological device, then subsequently contacted with the polysaccharide. In another aspect, the plant cells are first contacted with the polysaccharide and subsequently contacted with the biological device. In a further aspect, the plant cells are simultaneously contacted with the polysaccharide and the biological device.
In one aspect, the polysaccharide includes chitosan, glucosamine (GlcN), N- acetylglucosamine (NAG), or any combination thereof. Chitosan is generally composed of glucosamine units and N-acetylglucosamine units and can be chemically or enzymatically extracted from chitin, which is a component of arthropod exoskeletons and fungal and microbial cell walls. In certain aspects, the chitosan can be acetylated to a specific degree of acetylation in order to enhance tissue growth during culturing as well as metabolite production. In one aspect, the chitosan is from 60% to about 100%, 70% to 90%, 75% to 85%, or about 80% acetylated. In one aspect, chitosan isolated from the shells of crab, shrimp, lobster, and/or krill is useful herein.
The molecular weight of the chitosan can vary, as well. For example, the chitosan comprises about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units and/or N-acetylglucosamine units. In another aspect, the chitosan includes 5 to 7 glucosamine units and/or N-acetylglucosamine units. In one aspect, the chitosan is in a solution of water and acetic acid at less than 1% by weight, less than 0.75% by weight, less than 0.5% by weight, less than 0.25% by weight, or less than 0.1% by weight. In another aspect, the amount of chitosan that is applied to the plant cells is from 0.1% to 0.01% by weight, from 0.075% to 0.025% by weight, or is about 0.05% by weight. The polysaccharides used herein are generally natural polymers and thus present no environmental concerns. Additionally, the polysaccharide can be used in acceptably low concentrations.
The plant cells can be contacted with the polysaccharide using a number of techniques. In one aspect, the plant cells or reproductive organs (e.g., a plant embryo) can be cultured in agar and medium with a solution of the polysaccharide. In other aspects, the polysaccharide can be applied to a plant callus by techniques such as, for example, coating the callus or injecting the polysaccharide into the callus. In this aspect, the age of the callus can vary depending upon the type of plant. The amount of polysaccharide can vary depending upon, among other things, the selection and number of plant cells. The use of the polysaccharide in the methods described herein permits rapid tissue culturing at room temperature. Due to the ability of the polysaccharide to prevent microbial contamination, the tissue cultures can grow for extended periods of time ranging from days to several weeks. Moreover, tissue culturing with the polysaccharide can occur in the dark and/or light. As discussed above, the plant cells can be contacted with any of the biological devices described above. Thus, the use of the polysaccharides and biological devices described herein is a versatile way to culture and grow plant cells - and ultimately, plants of interest - with enhanced physiological properties.
In one aspect, a plant callus such as described above can be planted and allowed to grow and mature into a plant bearing fruit and leaves.
In a further aspect, provided herein is a plant grown by the process of contacting plant gamete cells, a plant reproductive organ, or a plant callus with the biological devices disclosed herein. Also provided herein is a method for producing such a plant. In one aspect, the method includes the steps of:
(a) contacting a plant callus with the biological device or extract;
(b) culturing the plant callus; and
(c) growing a plant from the plant callus. In some aspects, the plant callus is cultured with chitosan. In a further aspect, the chitosan is from 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% acetylated and has 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 glucosamine units, N-acetylglucosamine units, or a combination thereof, where any value can be a lower and upper end-point of a range (e.g., 60% to 80% acetylation).
In another aspect, provided herein is a method for increasing the UV- resistance of a plant, the method involving growing a plant from plant cells that have been contacted with the biological devices and extracts disclosed herein. In one aspect, increased UV-resistance can be measured by growing plants from a treated and an untreated callus alongside one another and comparing UV-induced damage after a period of time. In a further aspect, an agricultural product harvested from a UV-resistant plant will also be more UV -resistant. Further in this aspect, for example, cotton from a cotton plant grown with the biological devices and extracts will be more UV-resistant than cotton grown from an untreated plant.
Aspects
The present disclosure can be described in accordance with the following numbered Aspects, which should not be confused with the claims.
Aspect 1 : A DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
Aspect 2: A DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
Aspect 3: The DNA construct in any preceding aspect, wherein the gene that expresses phosphoribulokinase has SEQ ID NO. 1 or at least 70% homology thereto. Aspect 4: The DNA construct in any preceding aspect, wherein the gene that expresses a-actin has SEQ ID NO. 2 or at least 70% homology thereto.
Aspect 5: The DNA construct in any preceding aspect, wherein the gene that expresses a heat shock protein expresses HSP70. Aspect 6: The DNA construct of aspect 5, wherein the gene that expresses HSP70 has SEQ ID NO. 3 or at least 70% homology thereto.
Aspect 7: The DNA construct in any preceding aspect, wherein the gene that expresses RuBisCO large subunit 1 has SEQ ID NO. 4 or at least 70% homology thereto. Aspect 8: The DNA construct in any preceding aspect, wherein the gene that expresses luciferase has SEQ ID NO. 5 or at least 70% homology thereto.
Aspect 9: The DNA construct in any preceding aspect, wherein the gene that expresses iron oxidase has SEQ ID NO. 7 or at least 70% homology thereto.
Aspect 10: The DNA construct of aspect 2, wherein the gene that expresses TonB has SEQ ID NO. 9 or at least 70% homology thereto.
Aspect 11 : The DNA construct in any preceding aspect, wherein the construct further comprises a promoter.
Aspect 12: The DNA construct of aspect 11, wherein the promoter comprises a GAL1 promoter, an iron promoter, or both. Aspect 13: The DNA construct of aspect 12, wherein the iron promoter has SEQ ID NO. 6 or at least 70% homology thereto.
Aspect 14: The DNA construct in any preceding aspect, wherein a Gall promoter is positioned before (a) the gene that expresses phosphoribulokinase, (b) the gene that expresses a-actin, (c) the gene that expresses TonB, (d) the gene that expresses a heat shock protein, (e) the gene that expresses RuBisCO large subunit 1, (f) the gene that expresses luciferase, and (g) the gene that expresses iron oxidase, or any combination thereof. Aspect 15: The DNA construct in any preceding aspect, wherein the construct further comprises a terminator.
Aspect 16: The DNA construct of aspect 15, wherein the terminator is a CYC1 terminator. Aspect 17: The DNA construct in any preceding aspect, wherein the construct further comprises a gene that confers resistance to an antibiotic.
Aspect 18: The DNA construct of aspect 17, wherein the antibiotic comprises tetracycline, neomycin, kanamycin, ampicillin, hygromyc , chloramphenicol, amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazid, methicillin, oxacillin, vancomycin, streptomycin, quinolines, rifampin, rifampicin, sulfonamides, cephalothin, erythromycin, gentamicin, penicillin, other commonly-used antibiotics, or a combination thereof.
Aspect 19: The DNA construct in any preceding aspect, wherein the construct further comprises a gene that expresses a reporter protein. Aspect 20: The DNA construct of aspect 19, wherein the gene that expresses the reporter protein, expresses a fluorescent protein.
Aspect 21: The DNA construct of aspect 20, wherein the reporter protein comprises a red fluorescent protein, a cyan fluorescent protein, a green fluorescent protein, a yellow fluorescent protein, or a combination thereof. Aspect 22: The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin , (3) a gene that expresses a heat shock protein, (4) a gene that expresses RuBisCO large subunit 1, (5) a gene that expresses luciferase, (6) an iron promoter, and (7) a gene that expresses iron oxidase.
Aspect 23: The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (4) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (5) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (6) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (7) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
Aspect 24: The DNA construct of aspect 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (14) a CYC1 terminator, (15) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (16) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
Aspect 25: The DNA construct of aspect 1, wherein the DNA construct has SEQ ID NO. 8 or at least 70% homology thereto.
Aspect 26: The DNA construct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin, (3) a gene that expresses TonB, (4) a gene that expresses a heat shock protein, (5) a gene that expresses RuBisCO large subunit 1, (6) a gene that expresses luciferase, (7) an iron promoter, and (8) a gene that expresses iron oxidase.
Aspect 27: The DNA construct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (4) a gene that expresses a heat shock protein having SEQ ID
NO. 3 or at least 70% homology thereto, (5) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (6) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (7) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (8) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
Aspect 28: The DNA constmct of aspect 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a- actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (14) a CYC1 terminator, (15) a GAL1 promoter, (16) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (17) a CYC1 terminator, (18) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (19) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
Aspect 29: The DNA construct of aspect 2, wherein the DNA constmct has SEQ ID NO. 10 or at least 70% homology thereto.
Aspect 30: A vector comprising the DNA construct in any preceding aspect.
Aspect 31 : The vector of aspect 30, wherein the vector is a plasmid. Aspect 32: The vector of aspect 30, wherein the vector is pWLNEO, pSV2CAT, pOG44, pXTI, pSG, pSVK3, pBSK, pBR322, pYES, pYES2, pBSKII, or pUC.
Aspect 33: The vector of aspect 30, wherein the vector is pYES2.
Aspect 34: The vector of aspect 30, wherein the vector is pBSK. Aspect 35: A biological device comprising host cells transformed with the DNA construct or vector in any preceding aspect.
Aspect 36: The biological device of aspect 35, wherein the host cells comprise yeast or bacteria.
Aspect 37: The biological device of aspect 36, wherein the bacteria comprise Escherichia coli
Aspect 38: The biological device of aspect 36, wherein the yeast comprise Saccharomyces cerevisiae.
Aspect 39: An extract produced by the biological device of aspect 35-38.
Aspect 40: The extract of aspect 39, wherein the extract is produced by exposing a culture of the biological device to UV radiation.
Aspect 41 : A pharmaceutical composition comprising the extract of aspect 39 or 40.
Aspect 42: The pharmaceutical composition of aspect 41, further comprising a UV- blocking agent.
Aspect 43: The pharmaceutical composition of aspect 42, wherein the UV-blocking agent is zinc oxide, titanium dioxide, a carotenoid, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or any combination thereof.
Aspect 44: A sunscreen comprising the extract of aspect 39 or 40.
Aspect 45: A paint, ink, dye, or stain comprising the extract of aspect 39 or 40.
Aspect 46: A plant coated with the extract of aspect 39 or 40. Aspect 47 : An agricultural product coated with the extract of aspect 39 or 40.
Aspect 48: The agricultural product of aspect 47, wherein the agricultural product comprises fruits, leaves, seeds, flowers, grains, nuts, stems, vegetables, or mushrooms.
Aspect 49: An article comprising the extract of aspect 39 or 40, wherein the article is coated with the extract, the extract is dispersed throughout the article, or a combination thereof.
Aspect 50: The article of aspect 49, wherein the article is made of glass, fiberglass, plastic, metal, wood, fabric, foam, rubber, latex, silicone, or any combination thereof.
Aspect 51 : A method of reducing or preventing exposure of an item to UV radiation comprising applying to the item the extract of aspect 39 or 40. Aspect 52: The method of aspect 51, wherein the extract blocks at least 50% of UV radiation from contacting the item.
Aspect 53: The method of aspect 51, wherein the extract blocks at least approximately 50% of longwave UV radiation from contacting the item.
Aspect 54: The method of aspect 51, wherein the extract blocks at least approximately 50% of shortwave UV radiation from contacting the item.
Aspect 55: The method of aspect 51, wherein the item comprises the skin of a subject.
Aspect 56: The method of aspect 51, wherein the item comprises an agricultural product. Aspect 57: The method of aspect 51, wherein the item comprises a construction material, an aeronautical material, or an aerospace matenal.
Aspect 58: A plant grown by the process comprising contacting plant gamete cells, a plant callus, or a plant reproductive organ with the device in any one of aspects 35-38 or the extract of aspects 39 or 40. Aspect 59: The plant of aspect 58, wherein the plant is produced by the method comprising the steps of:
a. contacting a plant callus with the biological device or extract; b. culturing the plant callus; and
c. growing the plant from the plant callus.
Aspect 60: The plant of aspect 59, wherein the plant callus is cultured with chitosan. Aspect 61: The plant of claim 60, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamme units, or a combination thereof.
Aspect 62: A method for increasing the UV resistance of a plant, the method comprising growing a plant from plant cells that have been contacted with the biological device in any one of aspects 32-35 35-38 or the extract of aspects 39 or 40. Aspect 63: The method of claim 62, wherein the plant is a cotton plant.
Aspect 64: A method for reducing or preventing the growth of barnacles on a surface, the method comprising applying a paint comprising the extract of aspects 39 or 40 and chitosan to the surface.
Aspect 65: The method of aspect 64, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamme units, or a combination thereof.
Aspect 66: A cosmetic composition comprising a physiologically acceptable medium and the extract of aspects 39 or 40.
Aspect 67: An optical film comprising the extract of aspects 39 or 40.
EXAMPLES
The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how the compounds, compositions, and methods described and claimed herein are made and evaluated, and are intended to be purely exemplary and are not intended to limit the scope of what the inventors regard as their invention. Efforts have been made to ensure accuracy with respect to numbers (e.g., amounts, temperature, etc.) but some errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, temperature is in °C or is at ambient temperature, and pressure is at or near atmospheric. Numerous variations and combinations of reaction conditions, e.g., component concentrations, desired solvents, solvent mixtures, temperatures, pressures, and other reaction ranges and conditions can be used to optimize the product punty and yield obtained from the desired process. Only reasonable and routine experimentation will be required to optimize such processes and conditions.
Evaluation of Anti-UV Properties
A. Production of Extracts from Biological Device
1. Fermentation in yeast malt medium with 2% of Raffinose, 1 mg/mL of glucosamine and induction with galactose at 30°C for 72 hours.
2. For the construct in Figures 2A and 2B cloned in E. coli, fermentation in Luria Broth (LB) medium with 1 pg/pL of Ampicillin and induction with I pg/mL of IPTG and 2% of Raffinose at 37°C for 48 hours.
3. Sonication: 7 times for 2'30”
4. Filtration of supernatant by 8 pm, 5 pm, 2 pm, 1.2 pm, in addition for bacteria 0.8 um and 0.45 um.
5. Biological test for Anti UV protection on Bacillus subtilis ATCC 82 at different times.
B. Procedure and Results
1. Culture of Bacteria Bacillus subtilis (ATCC 82) was grown at 30°C for one - two days.
2. Then, aliquots were taken from this culture and subjected to different bacteria dilutions and the concentrations were determine spectrophotometrically at the respective optical density, OD (i.e. 0.5, 1.0, 1.4, 2.0, however 1.4 was preferable).
3. Solutions were made from the above dilutions, and were mixed with different concentrations of extract from Devices, those obtaining different proportions (i.e. 5:2, Device extract Bacteria). These solutions were placed in Petri dishes with a total volume of 7 mL. These solutions were made in triplicates.
4. The respective above mixed solutions were placed in the UV incubator, and samples were taken at different times (i.e. 30 minutes, 1 hour, 2 hours). Each time, aliquots of 1 mL bacterial samples were taken from each replicate and fully mixed. Then, 500 pL were taken and placed on Nutrient agar by using standard streaking method; 3 agar plate replicates were used at each time, and other portion of aliquot was reserved for measurement of ATP. The agar plates were incubated at 30°C for 1 - 4 days. Bacterial colonies of Bacillus subtilis were viewed and counted at each time.
5. After exposure to UV-B (302 nm) and UV-A (365 nm) light at different times (30 minutes, 1 hour, 2 hours, little cell death was observed with the cells contacted with the anti-UV extract.
Throughout this application, various publications are referenced. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the compounds, compositions, and methods described herein.
Various modifications and variations can be made to the compounds, compositions, and methods described herein. Other aspects of the compounds, compositions, and methods described herein will be apparent from consideration of the specification and practice of the compounds, compositions, and methods disclosed herein. It is intended that the specification and examples be considered as exemplary.

Claims

What is claimed:
1. A DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses a heat shock protein, (d) a gene that expresses RuBisCO large subunit 1, (e) a gene that expresses luciferase, and (f) a gene that expresses iron oxidase.
2. A DNA construct comprising the following genetic components: (a) a gene that expresses phosphoribulokinase, (b) a gene that expresses a-actin, (c) a gene that expresses TonB, (d) a gene that expresses a heat shock protein, (e) a gene that expresses RuBisCO large subunit 1, (f) a gene that expresses luciferase, and (g) a gene that expresses iron oxidase.
3. The DNA construct of claim 1 or 2, wherein the gene that expresses
phosphoribulokinase has SEQ ID NO. 1 or at least 70% homology thereto.
4. The DNA construct of claim 1 or 2, wherein the gene that expresses a-actin has SEQ ID NO. 2 or at least 70% homology thereto.
5. The DNA construct of claim 1 or 2, wherein the gene that expresses a heat shock protein expresses HSP70.
6. The DNA construct of claim 5, wherein the gene that expresses HSP70 has SEQ ID NO. 3 or at least 70% homology thereto.
7. The DNA construct of claim 1 or 2 wherein the gene that expresses RuBisCO large subunit 1 has SEQ ID NO. 4 or at least 70% homology thereto.
8. The DNA construct of claim 1 or 2, wherein the gene that expresses luciferase has SEQ ID NO. 5 or at least 70% homology thereto.
9. The DNA construct of claim 1 or 2, wherein the gene that expresses iron oxidase has SEQ ID NO. 7 or at least 70% homology thereto.
10. The DNA construct of claim 2, wherein the gene that expresses TonB has SEQ ID NO. 9 or at least 70% homology thereto.
11. The DNA construct of claim 1 or 2, wherein the construct further comprises a promoter.
12. The DNA construct of claim 11, wherein the promoter comprises a GAL1 promoter, an iron promoter, or both.
13. The DNA construct of claim 12, wherein the iron promoter has SEQ ID NO. 6 or at least 70% homology thereto.
14. The DNA construct of claim 1 or 2, wherein a Gall promoter is positioned before (a) the gene that expresses phosphoribulokinase, (b) the gene that expresses a-actin, (c) the gene that expresses TonB, (d) the gene that expresses a heat shock protein, (e) the gene that expresses RuBisCO large subunit 1, (1) the gene that expresses luciferase, and (g) the gene that expresses iron oxidase, or any combination thereof.
15. The DNA construct of claim 1 or 2, wherein the construct further comprises a terminator.
16. The DNA construct of claim 15, wherein the terminator is a CYC1 terminator.
17. The DNA construct of claim 1 or 2, wherein the construct further comprises a gene that confers resistance to an antibiotic.
18. The DNA construct of claim 17, wherein the antibiotic comprises tetracycline, neomycin, kanamycin, ampicillin, hygromycin, chloramphenicol,
amphotericin B, bacitracin, carbapenam, cephalosporin, ethambutol, fluoroquinolones, isoniazid, methicillin, oxacillin, vancomycin, streptomycin, quinolines, rifampin, rifampicin, sulfonamides, cephalothin, erythromycin, gentamicin, penicillin, other commonly -used antibiotics, or a combination thereof.
19. The DNA construct of claim 1 or 2, wherein the construct further comprises a gene that expresses a reporter protein.
20. The DNA construct of claim 19, wherein the gene that expresses the reporter protein, expresses a fluorescent protein.
21. The DNA construct of claim 20, wherein the reporter protein comprises a red fluorescent protein, a cyan fluorescent protein, a green fluorescent protein, a yellow fluorescent protein, or a combination thereof.
22. The DNA construct of claim 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin , (3) a gene that expresses a heat shock protein, (4) a gene that expresses RuBisCO large subunit 1, (5) a gene that expresses luciferase, (6) an iron promoter, and (7) a gene that expresses iron oxidase.
23. The DNA construct of claim 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (4) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (5) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (6) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (7) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
24. The DNA construct of claim 1, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GAL1 promoter, (7) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GAL1 promoter, (10) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (14) a CYC1 terminator, (15) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (16) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
25. The DNA construct of claim 1, wherein the DNA construct has SEQ ID NO. 8 or at least 70% homology thereto.
26. The DNA construct of claim 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase, (2) a gene that expresses a-actin, (3) a gene that expresses TonB, (4) a gene that expresses a heat shock protein, (5) a gene that expresses RuBisCO large subunit 1, (6) a gene that expresses luciferase, (7) an iron promoter, and (8) a gene that expresses iron oxidase.
27. The DNA construct of claim 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (3) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (4) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (5) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (6) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (7) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (8) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
28. The DNA construct of claim 2, wherein the DNA construct comprises from 5' to 3' the following genetic components in the following order: (1) a gene that expresses phosphoribulokinase having SEQ ID NO. 1 or at least 70% homology thereto, (2) a CYC1 terminator, (3) a GAL1 promoter, (4) a gene that expresses a-actin having SEQ ID NO. 2 or at least 70% homology thereto, (5) a CYC1 terminator, (6) a GALl promoter, (7) a gene that expresses TonB having SEQ ID NO. 9 or at least 70% homology thereto, (8) a CYC1 terminator, (9) a GALl promoter, (10) a gene that expresses a heat shock protein having SEQ ID NO. 3 or at least 70% homology thereto, (11) a CYC1 terminator, (12) a GAL1 promoter, (13) a gene that expresses RuBisCO large subunit 1 having SEQ ID NO. 4 or at least 70% homology thereto, (14) a CYC1 terminator, (15) a GAL1 promoter, (16) a gene that expresses luciferase having SEQ ID NO. 5 or at least 70% homology thereto, (17) a CYC1 terminator, (18) an iron promoter having SEQ ID NO. 6 or at least 70% homology thereto, and (19) a gene that expresses iron oxidase having SEQ ID NO. 7 or at least 70% homology thereto.
29. The DNA construct of claim 2, wherein the DNA construct has SEQ ID NO.
10 or at least 70% homology thereto.
30. A vector comprising the DNA construct of claim 1 or 2.
31. The vector of claim 30, wherein the vector is a plasmid.
32. The vector of claim 30, wherein the vector is pWLNEO, pSV2CAT, pOG44, pXTI, pSG, pSVK3, pBSK, pBR322, pYES, pYES2, pBSKII, or pUC.
33. The vector of claim 30, wherein the vector is pYES2.
34. The vector of claim 30, wherein the vector is pBSK.
35. A biological device comprising host cells transformed with the DNA construct of claim 1 or 2.
36. The biological device of claim 35, wherein the host cells comprise yeast or bacteria.
37. The biological device of claim 36, wherein the bacteria comprise Escherichia coli
38. The biological device of claim 36, wherein the yeast comprise Saccharomyces cerevisiae.
39. An extract produced by the biological device of claim 35.
40. The extract of claim 39, wherein the extract is produced by exposing a culture of the biological device to UV radiation.
41. A pharmaceutical composition comprising the extract of claim 39.
42. The pharmaceutical composition of claim 41, further comprising a UV- blocking agent.
43. The pharmaceutical composition of claim 42, wherein the UV -blocking agent is zinc oxide, titanium dioxide, a carotenoid, oxybenzone, octinoxate, homosalate, octisalate, octocrylene, avobenzone, or any combination thereof.
44. A sunscreen comprising the extract of claim 39.
45. A paint, ink, dye, or stain comprising the extract of claim 39.
46. A plant coated with the extract of claim 39.
47. An agricultural product coated with the extract of claim 39.
48. The agricultural product of claim 47, wherein the agricultural product
comprises fruits, leaves, seeds, flowers, grains, nuts, stems, vegetables, or mushrooms.
49. An article comprising the extract of claim 39, wherein the article is coated with the extract, the extract is dispersed throughout the article, or a combination thereof.
50. The article of claim 49, wherein the article is made of glass, fiberglass, plastic, metal, wood, fabric, foam, rubber, latex, silicone, or any combination thereof.
51. A method of reducing or preventing exposure of an item to UV radiation
comprising applying to the item the extract of claim 39.
52. The method of claim 51, wherein the extract blocks at least 50% of UV
radiation from contacting the item.
53. The method of claim 51, wherein the extract blocks at least approximately 50% of longwave UV radiation from contacting the item.
54. The method of claim 51, wherein the extract blocks at least approximately 50% of shortwave UV radiation from contacting the item.
55. The method of claim 51, wherein the item comprises the skin of a subject.
56. The method of claim 51, wherein the item comprises an agricultural product.
57. The method of claim 51, wherein the item comprises a construction material, an aeronautical material, or an aerospace material.
58. A plant grown by the process comprising contacting plant gamete cells, a plant callus, or a plant reproductive organ with the extract of claims 39.
59. The plant of claim 58, wherein the plant is produced by the method comprising the steps of:
a. contacting a plant callus with the biological device or extract;
b. culturing the plant callus; and
c. growing the plant from the plant callus.
60. The plant of claim 59, wherein the plant callus is cultured with chitosan.
61. The plant of claim 60, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamine units, or a combination thereof.
62. A method for increasing the UV resistance of a plant, the method comprising growing a plant from plant cells that have been contacted with the extract of claim 39.
63. The method of claim 62, wherein the plant is a cotton plant.
64. A method for reducing or preventing the growth of barnacles on a surface, the method comprising applying a paint comprising the extract of claim 39 and chitosan to the surface.
65. The method of claim 64, wherein the chitosan is from 60% to 100% acetylated and has from 3 to 20 glucosamine units, N-acetylglucosamine units, or a combination thereof.
66. A cosmetic composition comprising a physiologically acceptable medium and the extract of claim 39.
67. An optical film comprising the extract of claim 39.
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