WO2020181594A1 - 一种定量测定土壤颗粒态有机质空间结构的方法 - Google Patents
一种定量测定土壤颗粒态有机质空间结构的方法 Download PDFInfo
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- 239000002689 soil Substances 0.000 title claims abstract description 79
- 239000002846 particulate organic matter Substances 0.000 title claims abstract description 51
- 238000000034 method Methods 0.000 title claims abstract description 42
- 239000011148 porous material Substances 0.000 claims abstract description 30
- 238000009826 distribution Methods 0.000 claims abstract description 19
- 238000010603 microCT Methods 0.000 claims abstract description 16
- 238000000605 extraction Methods 0.000 claims abstract description 9
- 230000000877 morphologic effect Effects 0.000 claims abstract description 9
- 238000003709 image segmentation Methods 0.000 claims abstract description 7
- 238000004364 calculation method Methods 0.000 claims abstract description 4
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- 239000011707 mineral Substances 0.000 claims description 14
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- GCLGEJMYGQKIIW-UHFFFAOYSA-H sodium hexametaphosphate Chemical compound [Na]OP1(=O)OP(=O)(O[Na])OP(=O)(O[Na])OP(=O)(O[Na])OP(=O)(O[Na])OP(=O)(O[Na])O1 GCLGEJMYGQKIIW-UHFFFAOYSA-H 0.000 claims description 3
- 235000019982 sodium hexametaphosphate Nutrition 0.000 claims description 3
- 239000001577 tetrasodium phosphonato phosphate Substances 0.000 claims description 3
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- 238000007781 pre-processing Methods 0.000 claims description 2
- 238000005516 engineering process Methods 0.000 abstract description 11
- 239000004016 soil organic matter Substances 0.000 abstract description 5
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- 238000004445 quantitative analysis Methods 0.000 description 4
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- 229910019142 PO4 Inorganic materials 0.000 description 1
- 235000014676 Phragmites communis Nutrition 0.000 description 1
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N1/00—Sampling; Preparing specimens for investigation
- G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
- G01N1/34—Purifying; Cleaning
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
- G01N15/10—Investigating individual particles
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N23/00—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00
- G01N23/02—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00 by transmitting the radiation through the material
- G01N23/04—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00 by transmitting the radiation through the material and forming images of the material
- G01N23/046—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00 by transmitting the radiation through the material and forming images of the material using tomography, e.g. computed tomography [CT]
Definitions
- the invention relates to a method for quantitatively determining the spatial structure of soil particulate organic matter, and belongs to the technical field of soil research.
- Soil particulate organic matter has complex physical structure characteristics, and there is currently no unified and effective method at home and abroad to intuitively and quantitatively determine the spatial structure of soil particulate organic matter.
- Scholars at home and abroad use non-destructive microanalysis techniques, such as electron microscopy, scanning electron microscopy-energy spectrum analysis technology (SEM-EDX) and other means to study the surface morphology and chemical composition of soil particulate organic matter.
- SEM-EDX scanning electron microscopy-energy spectrum analysis technology
- the soil granular organic matter of different sources and degrees of humification shows obvious structural differences under the electron microscope, such as flocculent structure, layered structure and inter-flocculent structure.
- the use of electron microscopy, scanning electron microscopy and other methods can only visually distinguish the differences in soil organic matter structure, while the quantitative analysis of organic matter spatial structure and the determination of morphological and structural parameters cannot be achieved.
- the synchrotron radiation-based micro-computed tomography (macro-CT) technology can capture the detailed features of the soil structure through the conversion of light and electrical signals and perform quantitative determinations.
- This method has the advantages of fast speed, strong imaging contrast and high resolution.
- scholars at home and abroad mostly use this technology to study soil pore structure, distribution and preferential flow relationship, and the fractal characteristics of soil aggregates.
- the method is continuously optimized and upgraded in the application process, it is gradually applied to the analysis of the microstructure characteristics of soil aggregates, such as the analysis of changes in the fractal structure of pores in soil aggregates. Flavel R J et al.
- micro-CT technology has the advantages of faster and more accurate pore structure research (Flavel R J, Guppy C N, Tighe M, et al. Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography [J]. Journal of Experimental Botany:2012:421).
- the present invention provides a method for quantitatively determining the spatial structure of soil particulate organic matter.
- This method first extracts the particulate organic matter in the soil by wet sieving classification and density extraction, and then scans the particulate organic matter with micro-CT technology.
- the scanned image is processed by removing artifacts-calculating threshold-image segmentation-three-dimensional reconstruction Analyze the process of structure and other processes to quantify the parameters of the soil's mechanical morphology, organic matter quantity, volume ratio and volume distribution, and pore size distribution.
- the technical scheme of the present invention is: a method for quantitatively determining the spatial structure of soil particulate organic matter, which is characterized by including the following steps:
- the scanned projection image is processed by removing artifacts, calculating thresholds and image segmentation, dividing the image into three parts: pores, organic matter and soil minerals, and then performing three-dimensional reconstruction to restore the original appearance of soil granular organic matter;
- the wet sieve classification of the step 1) is as follows: add soil into the centrifuge tube and slowly add water to infiltrate it to avoid the rapid increase in water pressure and cause the destruction of the soil structure; then the centrifuge tube is placed upside down on a 2mm sieve (2mm sieve lower layer is placed in sequence and matched 250 ⁇ m and 53 ⁇ m sieve) below the water surface until the soil sample completely sinks into the sieve; move the sieve up and down, and classify through the wet sieve to obtain large aggregates with a particle size of 250-2000 ⁇ m and micro-aggregates with a particle size of 53-250 ⁇ m;
- the density extraction in step 1) is:
- the lower reorganized organic matter is dispersed with 5g/L sodium hexametaphosphate and then wet sieved to obtain the granular organic matter bound inside the macroaggregates (microaggregates);
- the artifact removal, threshold calculation and image segmentation in the step 3) are: preprocessing removes the artifacts and then performs slice segmentation, outputs it as a binary image, converts the binary image into an octal image and performs threshold segmentation; the threshold is selected
- the global threshold method is selected by observing the gray value histogram. The pores have no absorption of X-rays, the gray value is the smallest, and the soil mineral absorption is the largest. The gray value is larger, and the organic matter is between the two. Build a histogram with different gray values. The histogram will have two peaks. The gray value of the middle trough of the two peaks can be selected as the threshold to divide the image into three parts: pores, organic matter, and soil minerals.
- the organic matter components and soil minerals can be dyed to enhance the visual contrast between the two.
- step 4) quantitatively calculates the spatial structure characteristics of the organic matter using image J software, and the size of the organic matter pores is expressed in the form of equivalent diameter.
- the present invention first extracts the particulate organic matter in the soil through wet screening and density extraction methods and grouping them, thereby solving the problem of "soil particulate organic matter is randomly distributed in the soil, complicated in structure, and relatively difficult to quantitatively determine”. Provides the possibility for the quantitative determination of soil particulate organic matter;
- the present invention uses the micro-CT technology for the first time to quantitatively determine the spatial structure characteristics of soil granular organic matter (morphological characteristics, organic matter quantity, volume ratio and volume distribution, pore size distribution and other parameters). This is a soil science, especially soil organic matter.
- the in-depth study laid the foundation.
- Figure 1 is a micro-CT scan image of soil particulate organic matter
- Figure 2 is the reconstructed slice of soil granular organic matter micro-CT scan image converted into octal image
- Figure 3 is an example diagram of threshold analysis to distinguish between organic matter and soil minerals
- Figure 4 is a distribution diagram of soil organic matter particles after segmentation and dyeing, where gray is the organic matter component and green is the attached mineral component;
- Figure 5 is a 3D reconstruction image of soil granular organic matter whose volume pixels are 500 ⁇ 500 ⁇ 500.
- the method of density extraction extracts particulate organic matter
- Use NaI solution with a density of 1.85g/cm 3 to classify the density of macroaggregates and microaggregates that is, take 5g agglomerates sample in a 100mL centrifuge tube with a solid-to-liquid ratio of 1:7, upside down for 1 min, and let stand for 30 min Afterwards, the upper layer of light organic matter is separated by filtration, and the lower layer sample repeats the above steps until the light organic matter is completely separated, and free particulate organic matter (fPOM) of macroaggregates (250-2000 ⁇ m) and microaggregates (53-250 ⁇ m) is obtained.
- fPOM free particulate organic matter
- the lower reorganized organic matter was dispersed with 5g/L sodium hexametaphosphate for 16 hours and then wet sieved to obtain the particulate organic matter (iPOM) bound inside the agglomerate.
- the samples of each component are marked as: fPOM (250-2000 ⁇ m), iPOM (250-2000 ⁇ m) ), fPOM (53-250 ⁇ m), iPOM (53-250 ⁇ m).
- the granular organic matter of the fPOM (250-2000 ⁇ m) component is taken as an example; the micro-CT experiment analysis is carried out.
- the micro-CT scanning imaging experiment of soil granular organic matter is in Shanghai Light Source BL13WX
- the radiography beam line station is completed.
- the sample scanning parameters are set as follows: photon energy is 18keV, resolution is 3.25 ⁇ m, the sample stage rotates at a constant speed from 0 to 180° in the horizontal direction, exposure time is 1.2s, a total of 1080 projection images are collected, and the CCD detector records scanning projections at various angles (The picture shown in Figure 1 is one of them). Then 1080 projections of each sample were used for reconstruction of CT images, and 1508 slices were obtained, and the resolution of each projection image was 2048 pixels ⁇ 2048 pixels.
- the reconstruction of the internal structure of the sample uses a filtered back projection algorithm.
- the image is divided into three parts: pores, organic matter and soil minerals.
- Quantitative analysis mainly selects a typical area with a size of 500 ⁇ 500 ⁇ 500 pixels.
- Quantitative analysis parameters the analysis of the size, volume, quantity and pore size of organic matter is completed by image J software. The pore size of organic matter is expressed in terms of equivalent diameter.
- the specific operation process is as follows: preprocess the image to remove artifacts and then perform slice segmentation, output as a binary image (all black), convert the binary image to an octal image (as shown in Figure 2) and perform threshold segmentation, with the gray value range from 0 to 255, where 0 means black with the lowest brightness, and 255 means pure white with the highest brightness.
- the selection of the threshold value adopts the global threshold value method to conduct experimental analysis on the image to be processed, and use the observation histogram to select.
- the pores have no absorption of X-rays, the gray value is the smallest, the soil mineral absorption is the largest, the gray value is larger, and the organic matter is medium. Between the two, build a histogram according to the different gray values of each component.
- the histogram will have 2 peaks.
- the gray value of the middle trough of the 2 peaks can be selected as the threshold, which distinguishes the segmentation threshold of organic matter and minerals.
- An example of analysis is shown in Figure 3. Appropriate smoothing can be performed before conversion to make the boundary contour clear and improve the signal-to-noise ratio.
- the organic matter components and soil minerals can be dyed to enhance the visual contrast between the two ( Figure 4).
- a 3D analysis tool was used to reconstruct 1508 slices to restore the original appearance of the soil granular organic matter.
- the volume ratio and the quantity per unit volume were quantitatively analyzed, and the results are shown in Table 1. Among them, the volume ratio is the ratio of organic matter to the sampling volume (500 ⁇ 500 ⁇ 500).
- the method of micro-CT technology to study soil particulate organic matter can learn from the description of soil pore morphology, and the morphology factor (or pore) of particulate organic matter is expressed as follows:
- A is the actual surface area of the particulate organic matter.
- the pore size of soil granular organic matter is expressed by equivalent diameter.
- the granular organic pores are divided into four parts, which are ultramicro pores ( ⁇ 5 ⁇ m), micropores (5-30 ⁇ m), mesopores (30-80 ⁇ m) and macropores (>80 ⁇ m).
- ultramicro pores ⁇ 5 ⁇ m
- micropores 5-30 ⁇ m
- mesopores (30-80 ⁇ m)
- macropores >80 ⁇ m.
- the porosity distribution characteristics of granular organic matter are shown in Table 3.
- the porosity is the ratio of the pore volume to the sampling volume (500 ⁇ 500 ⁇ 500).
- the above method can continue to quantitatively determine the spatial structure of iPOM (250-2000 ⁇ m), fPOM (53-250 ⁇ m) and iPOM (53-250 ⁇ m).
- the invention provides an effective method for the quantitative determination of the spatial structure of soil granular organic matter (morphological characteristics, organic matter quantity, volume ratio and volume distribution, pore size distribution and other parameters), which lays a foundation for the in-depth study of soil science, especially soil organic matter
- the basic method The basic method.
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Abstract
Description
Claims (8)
- 一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,包括以下步骤:1)通过湿筛分级得到250-2000μm的大团聚体和53-250μm的微团聚体,然后通过密度提取的方法,分别得到大团聚体的游离颗粒态有机质、微团聚体的游离颗粒态有机质、大团聚体内部结合的颗粒态有机质和微团聚体内部结合的颗粒态有机质;2)任选一组上面的颗粒态有机质,采用显微CT对其从0到180°匀速旋转进行图像扫描,共采集960幅以上扫描投影图像,并记录各角度的扫描投影图像;3)对扫描投影图像经去除伪影、计算阈值和图像分割处理,将图像分为孔隙、有机质和土壤矿物质三部分,然后进行三维重构,恢复土壤颗粒态有机质原貌;4)定量计算土壤颗粒态有机质空间结构特征。
- 如权利要求1所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤4)土壤颗粒态有机质空间结构特征包括形态特征、有机质数量、体积比及体积分布、孔隙大小分布中的一种或者一种以上。
- 如权利要求2所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤4)定量计算有机质空间结构特征采用image J软件完成,有机质孔隙大小采用等效直径的方式来表示。
- 如权利要求1所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤1)的湿筛分级为:将土壤加入离心管内缓慢加水浸润;然后将离心管倒置在2mm筛内的水面以下,直至土样完全沉入到筛中;所述2mm筛下层依次放置配套的250μm和53μm筛;上下移动筛子,通过湿筛分离得到粒径为250-2 000μm大团聚体和53-250μm的微团聚体。
- 如权利要求1所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤1)的密度提取为:将密度为1.85g/cm 3的NaI溶液和大团聚体或者微团聚体加入离心管中,上下颠倒,静置,过滤分离上层轻组有机质,下层样品重复上述步骤,直至完全分离轻组有机质,得到大团聚体或者微团聚体的游离颗粒态有机质;下层重组有机质用5g/L的六偏磷酸钠分散后湿筛,得到大团聚体或者微团聚体内部结合的颗粒态有机质。
- 如权利要求5所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述分离得到的组分均用超纯水反复洗去盐分离子,50℃烘干。
- 如权利要求1所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤3)的去除伪影、计算阈值和图像分割为:预处理将扫描投影图像去伪影后进 行切片分割,输出为二进制图像,将二进制图片转化为八进制图片后进行阈值分割;阈值的选择采用全局阈值方法,采用观察灰度值直方图来选择,孔隙对X射线没有吸收,灰度值最小,土壤矿物质吸收最大,灰度值较大,有机质介于二者之间,根据各组分灰度值不同建立直方图,直方图会有2个波峰,选择2个波峰的中间波谷的灰度值即可作为阈值,将图像分为孔隙、有机质和土壤矿物质三部分。
- 如权利要求1-7中任意一项所述的一种定量测定土壤颗粒态有机质空间结构的方法,其特征是,所述步骤3)对图像进行分割后对有机质组分和土壤矿物质进行染色处理,以增强二者的视觉对比。
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