WO2020163974A1 - Diagnostic use of aptamer for sclerostin - Google Patents

Diagnostic use of aptamer for sclerostin Download PDF

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WO2020163974A1
WO2020163974A1 PCT/CN2019/074763 CN2019074763W WO2020163974A1 WO 2020163974 A1 WO2020163974 A1 WO 2020163974A1 CN 2019074763 W CN2019074763 W CN 2019074763W WO 2020163974 A1 WO2020163974 A1 WO 2020163974A1
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aptamer
sclerostin
bone
osteosclerosin
subject
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PCT/CN2019/074763
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French (fr)
Chinese (zh)
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何伊欣
于媛媛
倪帅健
张戈
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深圳欣沛生物医药技术服务有限公司
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Priority to PCT/CN2019/074763 priority Critical patent/WO2020163974A1/en
Priority to CN201980091875.8A priority patent/CN113454224A/en
Publication of WO2020163974A1 publication Critical patent/WO2020163974A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/711Natural deoxyribonucleic acids, i.e. containing only 2'-deoxyriboses attached to adenine, guanine, cytosine or thymine and having 3'-5' phosphodiester links
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/115Aptamers, i.e. nucleic acids binding a target molecule specifically and with high affinity without hybridising therewith ; Nucleic acids binding to non-nucleic acids, e.g. aptamers

Definitions

  • the invention relates to the field of molecular diagnostics. Specifically, the present invention relates to the diagnostic use of aptamers for sclerostin.
  • Aptamers are short single-stranded oligonucleotides that bind to their targets through conformational complementation (Ellington and Szostak, 1990; Tuerk and Gold, 1990). Compared with antibodies, aptamers have similar affinity and specificity, but have some important advantages. For immunogenicity, aptamers are not recognized as foreign by the immune system, and do not stimulate negative immune responses because of their low molecular weight (Keefe, Pai et al., 2010). In terms of production and cost, aptamers can be identified in vitro under various selection conditions and can be easily synthesized by chemical methods, so production costs are lower and risks are lower (Banerjee, 2010). In terms of stability, aptamers have an infinite shelf life because they are not temperature sensitive and do not have any special cooling requirements during transportation, so there is no need for a continuous cold chain (Jayasena, 1999).
  • Osteosclerostin is a negative regulator of bone formation (Sclerostin), which inhibits the Wnt signaling pathway. Oste sclerostin has become a biomarker of bone metabolism, and its expression in vivo is associated with many diseases. It is expected in the art to develop aptamers for osteosclerosin for detecting osteosclerosin and/or diagnosing osteosclerosin-related diseases.
  • the present invention provides a method for detecting the presence and/or the expression level of bone sclerostin in a biological sample, comprising:
  • the difference in the formation of the complex between the biological sample and the control sample indicates the presence of bone sclerostin and/or the expression level of bone sclerostin in the sample
  • i) Contains at least about 90% identity, at least about 91% identity, at least about 92% identity, at least about 93% identity, at least about 94% identity with any of SEQ ID NO: 1-17 Or a nucleotide sequence that is at least about 95% identical, or,
  • the aptamer comprises the sequence of any one of SEQ ID NO: 1-17 or 19-24,
  • the aptamer specifically binds to bone sclerostin.
  • the aptamer has a K d for osteosclerosin of less than 100 nM, preferably less than 50 nM, preferably less than 40 nM, preferably less than 30 nM, preferably less than 20 nM, preferably less than 10 nM or less.
  • the aptamer for osteosclerosin is conjugated with fluorescent dyes, chemicals, polypeptides, enzymes, isotopes, or tags that can be used for detection.
  • the aptamer further comprises one or more modifications that confer enhanced nuclease resistance to the aptamer and/or enhance the half-life of the aptamer in vivo.
  • the modification includes a 3' inverse deoxythymidine (3'idT) modification.
  • the modification includes replacing one or more naturally occurring nucleotides with modified nucleotides selected from the group consisting of 2'-fluoro, 2'-methoxyethyl , 2'-methoxy or 2'propenoxy modified nucleotides, preferably 2'-methoxy modified nucleotides.
  • the modification includes an internucleotide modification, such as an internucleotide phosphorothioate bond modification.
  • the modification includes PEG modification.
  • the aptamer comprises 2'-methoxy (2'-OMe) modification, 3'inverted deoxythymidine (3'idT) modification and/or PEG modification.
  • the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject, the method comprising using the aptamer for sclerostin as defined above to detect a patient suspected of having a disease related to bone sclerostin.
  • the presence of bone sclerostin and/or the expression level of bone sclerostin in the biological sample represents the existence and/or state of bone sclerostin-related diseases.
  • the present invention also provides a method for diagnosing osteosclerosin-related diseases in a subject by administering an aptamer for osteosclerosin as defined above to a subject suspected of suffering from osteosclerosin-related diseases, and then The accumulation of the aptamer in the subject is detected, thereby diagnosing a disease related to osteosclerosis.
  • detecting the accumulation of the aptamer in the subject is achieved by imaging the subject, the aptamer being labeled with an isotope, for example.
  • the present invention provides the use of the above-defined aptamer for sclerostin in preparing a kit for detecting the presence of sclerostin in a biological sample and/or the expression level of sclerostin.
  • the present invention also provides the use of the aptamer for osteosclerosin as defined above in the preparation of a kit for diagnosing osteosclerosis-related diseases in a subject.
  • the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin in a subject is abnormal.
  • the present invention provides a kit for use in the detection method and/or diagnosis method of the present invention, the kit comprising the above-defined aptamer for osteosclerosis, for detecting the The presence and/or amount of the aptamer for osteosclerosin, and instructions for use.
  • Figure 1 shows the enrichment of high-affinity aptamers for sclerostin by SELEX.
  • A The binding affinity of the enriched ssDNA and unselected libraries to sclerostin.
  • B The binding affinity of the enriched ssDNA library and the unselected library to the control protein.
  • Figure 2 shows the specific characterization of aptamer candidates. Compared with binding to hepatocytes and PBMC, the aptamer candidates show high selectivity for human osteosclerosis.
  • Figure 3 shows the affinity of the aptamer candidates identified from the ssDNA library with a 40 nt random region to recombinant human sclerostin.
  • the dissociation constant (Kd) of aptamer candidates and antibodies to osteosclerosin was calculated by nonlinear curve fitting analysis.
  • the Kd values of each aptamer candidate for bone sclerostin are: aptscl 6 is 4.2 nM, aptscl 9 is 3.4 nM, aptscl 15 is 45.6 nM, aptscl 46 is 43.1 nM, aptscl 56 is 43.1 nM and aptscl 132 is 42.2 nM. .
  • the Kd value of the anti-sclerosin antibody is 3.55 nM.
  • Figure 4 shows the binding affinity of aptamer candidates identified from the ssDNA library with 25 nt random regions to recombinant human osteosclerosis.
  • the dissociation constant (Kd) of each candidate was calculated by nonlinear curve fitting analysis.
  • the Kd values of each aptamer candidate and antibody are: aptscl 32 is 0.18 nM, aptscl 29 is 0.28 nM, aptscl 22 is 0.76 nM, aptscl 16 is 0.22, aptscl 3 is 0.04 nM, aptscl 2 is 0.006 nM, aptscl 1 It is 0.02nM.
  • the Kd value of the anti-sclerosin antibody is 3.55 nM.
  • Figure 5 shows the use of TOP-Wnt-induced luciferase reporter gene assay to evaluate the inhibitory ability of aptamer candidates and antibodies.
  • A Compared with antibodies, Wnt signaling-mediated luciferase activity in MC3T3-E1 cells treated with aptamer candidates.
  • Aptscl 56, aptscl 6, aptscl 3 and anti-oste sclerostin antibodies can effectively inhibit the antagonistic effect of bone sclerostin on Wnt signaling and release Wnt-induced luciferase activity.
  • concentration of aptscl 56 and aptscl 6 reached 25 ⁇ g/ml and 47.4 ⁇ g/ml, the response reached a stable level.
  • Figure 6 shows the characterization of the binding of truncated aptscl3 to bone sclerostin.
  • aptscl3-1, -2, -3, -4, and -5 maintain high affinity for sclerostin, while aptscl3-6 shows low binding ability to sclerostin and cannot fit the affinity analysis curve;
  • Figure 7 shows the serum stability assessment of modified aptscl56 compared to unmodified aptscl56. All aptamers were treated with 10% and 100% mouse serum for 0 to 72 hours. After 48 hours of incubation in 10% mouse serum, almost all unmodified aptscl56 was degraded. 2'-OMe and 3'-idT modified aptscl56 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl56 was rapidly and completely degraded after 8 hours; at 72 hours, a small amount of modified aptamers remained.
  • Figure 8 shows the serum stability assessment of modified aptscl3-5 compared to unmodified aptscl3-5. All aptamers were treated with 10% and 100% mouse serum for 0 to 72 hours. After 24 hours of incubation in 10% mouse serum, Aptscl3-5 was degraded. 2'-OMe and 3'-idT modified aptscl3-5 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl3-5 was completely degraded rapidly after 8 hours, while modified aptscl3-5 remained intact after 72 hours.
  • Figure 9 shows the affinity and inhibitory efficacy of chemically modified aptscl56 and aptscl3-5. After chemical modification, both aptscl56 and aptscl3-5 maintained high affinity to osteosclerosis and in vitro inhibitory efficacy.
  • Figure 10 shows the pharmacokinetics of a single subcutaneous injection of Aptscl56 in 6 rats: the pharmacokinetic curve fitted by the software DAS (left) and the actual pharmacokinetic curve (right).
  • Figure 11 shows the pharmacokinetics of a single subcutaneous injection of PEG40K-aptscl56 in 6 rats: the pharmacokinetic curve fitted by the software DAS (left) and the actual pharmacokinetic curve (right).
  • Figure 12 shows the pharmacokinetics of a single subcutaneous injection of Aptscl56 and PEG40K-aptscl56 in rats.
  • nucleotide refers to ribonucleotides or deoxyribonucleotides, or modified forms and analogs thereof. Nucleotides include species, including purines (for example, adenine, hypoxanthine, guanine and their derivatives and analogs) and pyrimidines (for example, cytosine, uracil, thymine, and their derivatives and analogs) ⁇ ).
  • purines for example, adenine, hypoxanthine, guanine and their derivatives and analogs
  • pyrimidines for example, cytosine, uracil, thymine, and their derivatives and analogs
  • nucleic acid refers to polymers of nucleotides, and include DNA, RNA, DNA/RNA hybrids and these types of nucleic acids
  • the modification of oligonucleotides and polynucleotides includes appending various entities or parts to any position of the nucleotide unit.
  • polynucleotide include double or single stranded molecules.
  • nucleic acid, oligonucleotide and polynucleotide are broader terms than the term aptamer, so the terms nucleic acid, oligonucleotide and polynucleotide include but are not limited to aptamer.
  • aptamer refers to a non-naturally occurring nucleic acid that has a desired effect on a target molecule.
  • the desired effects include, but are not limited to, binding to the target, catalytically changing the target, reacting with the target in a manner that modifies or alters the target or the functional activity of the target, covalently connecting the target and promoting the target The reaction between the target and other molecules.
  • the effect is specific binding affinity for a target molecule (such as osteosclerosin), such a target molecule is a three-dimensional chemical structure rather than a polynucleotide, which does not rely on Watson/Crick base pairing.
  • the mechanism of triple helix formation to bind the aptamer wherein the aptamer is not a nucleic acid with a known physiological function bound by the target molecule.
  • the "specific binding" of an aptamer to its target means that the aptamer usually binds with a much higher affinity than other non-target components in the mixture or sample. Binding to its target.
  • Sequence "identity” has the art-recognized meaning, and the percentage of sequence identity between two nucleic acid or polypeptide molecules or regions can be calculated using disclosed techniques. Sequence identity can be measured along the entire length of a polynucleotide or polypeptide or along a region of the molecule.
  • identity is well known to the skilled person (Carrillo, H. & Lipman, D., SIAM J Applied Math 48:1073 (1988) ). Many algorithms can be used to determine the percent sequence identity.
  • An example of an algorithm suitable for determining the percent sequence identity is the algorithm used in the basic local alignment search tool (hereinafter "BLAST"), see, for example, Altschul et al., J. Mol. Biol. 215:403-410, 1990 and Altschul et al., Nucleic Acids Res., 15: 3389-3402, 1997.
  • BLAST basic local alignment search tool
  • NCBI National Center for Biotechnology Information
  • biological sample refers to any material, solution or mixture obtained from an organism. This includes blood (including whole blood, white blood cells, peripheral blood mononuclear cells, plasma, and serum), sputum, exhalation, urine, semen, saliva, meningeal fluid, amniotic fluid, glandular fluid, lymph, nipple aspiration fluid, Bronchial aspiration fluid, synovial fluid, joint aspiration fluid, cells, cell extracts and cerebrospinal fluid. This also includes the experimentally separated parts of all the aforementioned substances.
  • biological sample also includes, for example, materials, solutions or mixtures containing homogenized solid materials (such as from stool samples, tissue samples, or tissue biopsies).
  • biological sample also includes materials, solutions or mixtures derived from cell lines, tissue cultures, cell cultures, bacterial cultures, virus cultures, or cell-free biological systems.
  • the present inventors used osteosclerosin as the target protein for positive screening, and used unrelated proteins for negative screening, and finally selected aptamers that specifically bind to osteosclerosin with high affinity.
  • the sclerostin described herein is preferably human sclerostin, for example, the sclerostin whose amino acid sequence is shown in SEQ ID NO: 18.
  • the present invention provides an aptamer for osteosclerosin, the aptamer comprising at least about 90% identity, at least about 91% identity, at least about 90% identity to any of SEQ ID NO: 1-17 About 92% identity, at least about 93% identity, at least about 94% identity, at least about 95% identity, at least about 96% identity, at least about 97% identity, at least about 98% identity, or at least about 99% identical nucleotide sequence, or the aptamer comprises at least 30, at least 35, at least 40, at least 45, at least 50, or any of SEQ ID NO: 1-17 More consecutive nucleotides.
  • the aptamer specifically binds bone sclerostin.
  • the aptamer comprises the nucleotide sequence of any one of SEQ ID NO: 1-17 and 19-24, more preferably, the aptamer comprises SEQ ID NO: 1, 3, The nucleotide sequence of one of 10 or 19-23.
  • the aptamer of the present invention has less than 100 nM, preferably less than 50 nM, preferably less than 40 nM, preferably less than 30 nM, preferably less than 20 nM, preferably less than 10 nM or less K d (dissociation constant ).
  • the K d is measured by, for example, an enzyme-linked oligonucleotide assay (ELONA).
  • the aptamer of the present invention may also include one or more modifications.
  • the modification is a modification that confers enhanced nuclease resistance to the aptamer and/or enhances the half-life of the aptamer in vivo.
  • the modification includes, for example, 3'and 5'modification, such as 3'and 5'capping.
  • the aptamer is capped with inverted deoxythymidine at the 3'end, that is, 3'inverted deoxythymidine (3'idT) is modified.
  • the modification may also include the replacement of one or more naturally occurring nucleotides with modified nucleotides.
  • the modified nucleotides include, but are not limited to, 2'-fluoro, 2'-methoxyethyl, 2'-methoxy and/or 2'propyleneoxy modified nucleotides (ie, ribose The 2'-position hydroxyl group is substituted by fluorine, methoxyethyl, methoxy or propyleneoxy, etc.).
  • the modified nucleotides may also include C-5 modified pyrimidines.
  • C-5 modified pyrimidine refers to a pyrimidine with a modification at the C-5 position.
  • C-5 modified pyrimidines can enhance the nuclease resistance of oligonucleotides and are known in the art. For example, refer to International Patent Application WO 2011/130195 and its cited documents.
  • the modification is a 2'-methoxy (2'-OMe) modification.
  • one or more, such as 4 nucleotides, at the 5'and/or 3'end of the aptamer are modified as indicated, such as 2'-methoxy (2'-OMe) modification.
  • the modifications also include internucleotide modifications, such as those with uncharged bonds (such as methyl phosphonate, phosphotriester, phosphoamine ester, carbamate, etc.) and those with Internucleotide modification of charged bonds (such as phosphorothioate, phosphorodithioate, etc.), internucleotide modification of intercalating agents (such as acridine, psoralen, etc.), containing chelating agents (such as Metals, radioactive metals, boron, oxidizing metals, etc.) internucleotide modifications, internucleotide modifications containing alkylating agents, and internucleotide modifications with modified bonds (for example, alpha anomeric nucleic acid, etc.).
  • internucleotide modifications such as those with uncharged bonds (such as methyl phosphonate, phosphotriester, phosphoamine ester, carbamate, etc.) and those with Internucleotide modification of charged bonds
  • the modification may also include pegylation modification (PEG modification). Conjugation with PEG can extend the half-life of the aptamer.
  • the molecular weight of the PEG is about 1 kDa to about 100 kDa, for example, about 10 kDa to about 80 kDa, about 20 kDa to about 60 kDa, about 30 kDa to about 50 kDa, about 40 kDa.
  • the PEG may be conjugated to the 5' end of the aptamer.
  • the PEG may be conjugated to the 3' end of the aptamer.
  • the aptamer may comprise a combination of various modifications described above.
  • the aptamer may include 2'-methoxy (2'-OMe) modification, 3'inverse deoxythymidine (3'idT) modification and/or PEG modification.
  • the molecular weight of the PEG is about 40 kDa.
  • the present invention also provides a method for detecting the presence of sclerostin and/or the expression level of sclerostin in a biological sample, including :
  • the biological sample and the control sample are respectively contacted with the aptamer for bone sclerostin of the present invention
  • the difference in the formation of the complex between the biological sample and the control sample indicates the presence of osteosclerosin and/or the expression level of osteosclerosin in the sample.
  • the selection of the control sample belongs to the routine skills of those skilled in the art and can be determined according to actual needs.
  • the biological sample can be selected from serum, plasma, whole blood, synovial fluid and the like.
  • the aptamer is conjugated with fluorescent dyes, chemicals, polypeptides, enzymes, isotopes, tags, etc. that can be used for detection.
  • the present invention therefore also covers the use of the aptamer for osteosclerosin of the present invention in the preparation of a kit for detecting the presence of osteosclerosin in a biological sample and/or the expression level of osteosclerosin.
  • the present invention also provides the use of the aptamer for sclerostin of the present invention in preparing a kit for diagnosing a disease related to sclerostin in a subject.
  • the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
  • the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject, the method comprising using the aptamer for sclerostin of the present invention to detect organisms from a subject suspected of having a disease related to bone sclerostin.
  • the presence of bone sclerostin and/or the expression level of bone sclerostin in the scientific sample, the presence of bone sclerostin and/or the expression level of bone sclerostin represent the existence and/or state of bone sclerostin-related diseases.
  • the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
  • the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject by administering the aptamer for sclerostin of the present invention to a subject suspected of having a disease related to sclerostin, and then detecting Accumulation of the aptamer in the subject, thereby diagnosing osteosclerosis-related diseases.
  • detecting the accumulation of the aptamer in the subject is achieved by imaging the subject, the aptamer being labeled with an isotope, for example.
  • the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
  • osteo sclerostin-related diseases include conditions in which bone mineral density (BMD) is abnormal and/or pathologically low relative to healthy subjects.
  • Diseases characterized by low BMD and/or bone fragility include but are not limited to: primary and secondary osteoporosis, osteopenia, osteomalacia, osteogenesis imperfecta (OI), avascular necrosis (bone Necrosis), fracture and implant healing (dental implants and hip implants), bone loss due to other conditions (for example, related to HIV infection, cancer, and arthritis).
  • Other "sclerosin-related diseases” include, but are not limited to: rheumatoid arthritis, osteoarthritis, arthritis, and osteolytic lesions.
  • osteo sclerostin-related diseases include bone sclerostin-related cancers, such as myeloma (e.g., multiple myeloma with osteolytic lesions), breast cancer, colon cancer, melanoma, hepatocellular carcinoma, Epithelial cancer, esophageal cancer, brain cancer, lung cancer, prostate cancer or pancreatic cancer, and any metastases thereof.
  • “Sclerosingrin-related diseases” may also include kidney disease and cardiovascular disease caused by at least the expression of osteosclerosin in the kidney and in the cardiovascular system.
  • the conditions include, but are not limited to, nephropathy such as: glomerular diseases (eg, acute and chronic glomerulonephritis, rapidly progressive glomerulonephritis, nephrotic syndrome, focal proliferative glomerulonephritis, and Systemic diseases such as systemic lupus erythematosus, Goodpasture’s syndrome, multiple myeloma, diabetes, polycystic kidney disease, neoplasia, sickle cell disease, and chronic inflammation and other systemic diseases related to glomerular damage), renal tubules Diseases (for example, acute tubular necrosis and acute renal failure, polycystic kidney disease, medullary sponge kidney, medullary cystic disease, nephrogenic diabetes, and tubular acidosis), tubulointerstitial diseases (for example
  • the diseases also include, but are not limited to, cardiovascular diseases such as: ischemic heart disease (for example, angina pectoris, myocardial infarction, and chronic ischemic heart disease), hypertensive heart disease, pulmonary heart disease, valvular heart disease (for example, , Rheumatic fever and rheumatic heart disease, endocarditis, mitral valve prolapse, and aortic valve stenosis), congenital heart disease (for example, valve and blood vessel occlusion damage, atrioventricular septal defect, and long-standing Arterial duct), or cardiomyopathy (for example, myocarditis, congestive cardiomyopathy, and hypertrophic cardiomyopathy).
  • ischemic heart disease for example, angina pectoris, myocardial infarction, and chronic ischemic heart disease
  • hypertensive heart disease for example, pulmonary heart disease, valvular heart disease (for example, , Rheumatic fever and rheumatic heart disease, endocarditis
  • the subject can be any animal (domestic, domestic or wild), including but not limited to cats, dogs, horses, pigs, and cows, and is preferably human subjects.
  • the terms patient, individual, and subject can be used interchangeably.
  • the scope of the present invention also includes a kit used in the detection method and/or diagnosis method of the present invention, which includes the aptamer for osteosclerosin of the present invention, and instructions for use.
  • the kit may further include at least one additional detection reagent, which is used to detect the presence and/or amount of the aptamer for bone sclerostin of the present invention.
  • the kit generally includes a label indicating the intended use and/or method of use of the contents of the kit, that is, instructions for use.
  • the term label includes any written or recorded material provided on or with the kit or otherwise provided with the kit.
  • Example 1 Enrichment and screening of high-affinity aptamers for bone sclerostin by SELEX
  • the sequence in the ssDNA library consists of 18 nt conserved regions at both ends and a central random region. Two ssDNA libraries with random sequences of different lengths were used.
  • the sequence in the long ssDNA library contains a 40 nt random region (5'-CGTACGGTCGACGCTAGC-(N) 40 -CACGTGGAGCTCGGATCC-3'), and the sequence in the short ssDNA library contains a 25 nt random region (5'-CGTACGGTCGACGCTAGC-(N) 25 -CACGTGGAGCTCGGATCC- 3').
  • Synthetic forward primer (FP: 5'-CGTACGGTCGACGCTAGC-3') and biotinylated reverse primer (Bio-RP: 5'-Biotin-GGATCCGAGCTCCACGTG-3') were used to amplify ssDNA during selection. All oligonucleotides were purified by HPLC after synthesis.
  • the protein SELEX method was performed to identify high-affinity aptamers (Ellington and Szostak, 1990; Tuerk and Gold, 1990). 100-30 picomoles of His 6- labeled osteosclerosin were immobilized on NTA magnetic beads at 4°C for 1 hour (Murphy, Fuller et al., 2003). The 1 nanomolar ssDNA library was denatured at 95°C for 5 minutes and quickly cooled to 4°C, and then incubated with immobilized bone sclerostin at room temperature for 0.5-1 hour. Remove unbound sequences with wash buffer. After washing, the bound DNA-protein-NTA was collected, resuspended in H 2 O/Tween 20, and applied to PCR amplification.
  • Step 1 95°C initial denaturation for 1 minute
  • Step 2 95°C denaturation for 30 seconds, 56°C annealing for 30 seconds, and 72°C extension for 30 seconds , Repeat 12 cycles
  • step 3 72°C and finally extend for 5 minutes
  • the PCR product is applied to streptavidin magnetic beads through biotin-streptavidin binding.
  • the single-stranded sequence was regenerated by treatment with 0.2M NaOH. Negative selection is made for other His 6- labeled irrelevant proteins immobilized on NTA magnetic beads.
  • a total of 20 rounds of SELEX were performed for each option.
  • the DNA pool from the last round was subjected to high-throughput second-generation sequencing (NGS).
  • NGS high-throughput second-generation sequencing
  • Figure 1 shows that the affinity of the DNA pool to sclerostin increases after the 10th and 20th rounds of selection, indicating that high-affinity sclerostin aptamers are enriched by SELEX.
  • aptamer candidates to osteosclerosin representative aptamer candidates and random sequence (RS) (negative control) were synthesized using N-terminal biotinylation modification.
  • the specificity of each aptamer/RS to osteosclerosin was determined by enzyme-linked oligonucleotide assay (ELONA) using 1 ⁇ M. 160 ng of purified recombinant human sclerostin was coated in a 96-well microtiter plate by incubating in 100 ⁇ l PBS at 4° C. overnight.
  • the plate was blocked with blocking buffer (PBS, 0.1% Tween 20 and 1% BSA) for 1 hour at room temperature, and washed with SELEX B&W buffer (PBS, 1 mM MgCl 2 , 0.1% Tween 20 and 0.1% BSA) 4 Times.
  • the aptamer candidate was denatured at 95°C for 10 minutes and quickly cooled on ice for 10 minutes before use.
  • the plate was washed 4 times with SELEX B&W buffer to remove non-specific and very weak binding, and then washed 4 times with PBST+0.1% BSA.
  • 100 ⁇ l streptavidin-HRP/goat anti-human IgG Fc-HRP diluted 1:10000 in PBST+0.1%BSA
  • 50 ⁇ l TMB to each well and incubate for 20 minutes.
  • the reaction was stopped by adding 50 ⁇ l 2M H 2 SO 4 .
  • the absorbance at 450nm was measured with a microplate reader (Stoltenburg, Krafcikova et al., 2016).
  • the characterization procedure is similar to ELONA. 300,000 cells were incubated with each aptamer candidate, washed and separated by centrifugation.
  • aptamer candidates identified from the long and short ssDNA libraries showed high selectivity to human sclerostin when compared with the binding of hepatocytes and PBMC (Figure 2).
  • Aptamer candidates aptscl 6, 9, 15, 27, 34, 36, 46, 51, 56, 132, and 140 identified from the long ssDNA library
  • aptscl 1, 2, 3, 5, 8 identified from the short ssDNA library , 12, 16, 22, 29, and 32, showing high binding specificity to osteosclerosin, so they were selected for the following affinity characterization.
  • An enzyme-linked oligonucleotide assay was performed to determine the binding affinity of the aptamer candidate to osteosclerosin (Drolet, Moon-McDermott et al., 1996).
  • an enzyme-linked immunosorbent assay was performed to determine the binding affinity of anti-sclerosin antibody (Romosozumab, a humanized therapeutic antibody against bone sclerostin, purchased from Creative Biolabs) to human sclerostin (Engvall and Perlmann , 1971). 160 ng of purified recombinant human sclerostin was coated in a 96-well microtiter plate by incubating in 100 ⁇ l PBS at 4° C.
  • aptscl 6, 9, 15, 46, 56 and 132 have high affinity for bone sclerostin and have nanomolar dissociation constant (Kd) values (Kd The values were 4.2, 3.4, 45.6, 43.1 and 42.2 nM) ( Figure 3). But aptscl 36, 140, 136 and random sequence (RS) failed to fit.
  • aptscl 32, 29, 22, 16, 3, 2, and 1 have higher binding affinity to sclerostin, with Kd values of 0.18, 0.28, and 0.76, respectively , 0.02, 0.04, 0.006 and 0.02nM (Figure 4).
  • the random sequence shows low binding capacity to osteosclerosin and cannot be fitted.
  • the Kd value of anti-sclerosin antibody to osteosclerosin is 3.55 nM.
  • the high-affinity aptamer is particularly suitable for detecting bone sclerostin in biological samples and for diagnosing bone sclerostin-related diseases in vivo or in vitro.
  • Example 4 In vitro evaluation of the inhibitory ability of the candidate osteosclerosin aptamer on the activity of osteosclerosis
  • MC3T3-E1 cells were seeded in a 24-well plate, and on the second day, FuGENE HD transfection reagent (Promega) was used to transfect the corresponding reporter gene plasmid (100ng), Wnt3a plasmid (800ng) and bone sclerosis protein pellet (800ng). After 10 hours of transfection, the medium was replaced with fresh medium and the cells were treated with aptamer/antibody. After 24 hours of treatment, the cells in each well were lysed with 100 ⁇ l of passive lysis buffer, and 20 ⁇ l was taken for analysis.
  • FuGENE HD transfection reagent Promega
  • luciferase assay reagent II and Stop&Glo reagent are automatically prepared through SpectraMax i3x Multi-Mode Detection Platform (Molecular Device), and the data is analyzed accordingly (Grentzmann, Ingram et al., 1998; McNabb ,Reed et al., 2005).
  • aptscl 56, aptscl 6, aptscl 3 and anti-oste sclerostin antibodies can effectively inhibit the antagonistic effect of bone sclerostin on Wnt signaling and release Wnt-induced luciferase activity.
  • the inhibitory effect on bone sclerostin is dose-dependent.
  • concentrations of aptscl 56 and aptscl6 reach 25 ⁇ g/ml and 47.4 ⁇ g/ml, the response is stable.
  • the response was still unstable when the concentration was increased to 20 mg/ml.
  • the inhibition ability of aptscl56, aptscl 6 and aptscl 3 was analyzed by nonlinear curve fitting.
  • the EC50 of Aptscl 56, aptscl 6, and aptscl 3 were 19.7 ⁇ g/ml, 36.8 ⁇ g/ml and 18.2 ⁇ g/ml, respectively.
  • Aptamers with high affinity but low inhibition may be more suitable for in vivo diagnostic purposes.
  • aptscl3-1, aptscl3-2, aptscl3-3, aptscl3-4 and aptscl3-5 maintained high binding affinity to sclerostin, with Kd values of 0.86, 0.52, 0.2 and 0.22 nM, respectively.
  • aptscl3-6 could not fit the binding curve in this concentration range, indicating that the binding capacity to sclerostin was low ( Figure 6a).
  • aptscl56 and aptscl3-5 two truncated aptamers, called aptscl56 and aptscl3-5, which specifically bind to sclerostin closely and have a low nanomolar range
  • aptscl56 and aptscl3-5 two truncated aptamers
  • 2'-O-methyl (2'-OMe) modifications of aptamers have previously been used as post-selection modifications because of their enhanced nuclease resistance and elevated duplex melting temperature, as in clinical trials Shown in (Fine, Martin et al. 2005; Gupta, Hirota et al. 2014).
  • the modified nucleotides are introduced during the synthesis process.
  • the serum metabolic stability of modified and unmodified aptamers was evaluated in freshly prepared mouse serum. All aptamer samples were incubated with 10% and 100% mouse serum at 37°C for 0, 2, 4, 8, 12, 24, 36, 48, and 72 hours, respectively. At the specified time, the aptamer samples were quickly frozen in a dry ice bath and then stored at -80°C until all samples were harvested for evaluation. The stability of all aptamer samples is expressed as the band density of intact aptamers remaining after incubation, which can be determined by agarose gel electrophoresis.
  • the modified aptscl56 sequence is CGGG G TGTGG GTTCG TCGTT AGCTT GATTT GGCAG CT GCCC -idT, and the underlined nucleotide is a 2'-OMe modification.
  • the modified sequence of aptscl3-5 is GCTA G CTGTT GTACA TCGCC TTACG CA CGT G -idT, and the underlined nucleotide is 2'-OMe modification.
  • the band density of all aptamer samples was determined by a molecular imager (Bio-Rad) (Klussmann, Nolte et al. 1996, Siller-Matula, Merhi et al. 2012).
  • the binding affinity and in vitro inhibition potency determinations were performed using the same protocol as in the previous study.
  • aptscl56 the unmodified aptamer was completely degraded after 48 hours in 10% serum, and remained in 100% serum for only 8 hours.
  • 2'-OMe and 3'-idT modified aptscl56 were kept in 10% mouse serum for 72 hours, and degraded after 12 hours in 100% mouse serum. At 72 hours, a small amount of modified aptamers still remained ( Figure 7).
  • aptscl3-5 the unmodified aptamer was degraded 24 hours after incubation in 10% mouse serum. 2'-OMe and 3'-idT modified aptscl3-5 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl3-5 was rapidly and completely degraded after 8 hours, while modified aptscl3-5 maintained integrity after 72 hours ( Figure 8).
  • the chemically modified aptscl56 and aptscl3-5 showed high binding affinity to bone sclerostin, with Kd values of 6.55 and 0.54 nM, respectively.
  • chemically modified aptscl56 and aptscl3-5 can effectively relieve the inhibitory effect of bone sclerostin on Wnt signaling in cells, and their efficacies were 14 and 11 ⁇ g/ml, respectively (Figure 9).
  • Modification with 2'-OMe and 3'-idT can further promote the development of aptscl56 and aptscl3-5 into therapeutic nuclease-resistant aptamers.
  • the present invention determines the plasma pharmacokinetics of PEG-modified and non-PEG-modified aptamers (PEG40K-aptscl56 and aptscl56) for bone sclerostin after subcutaneous administration in rats.
  • the aptscl56 sequence is CGGGG TTGTG GTTCG TCGTT AGCTT GATTT GGCAG CTGCCC-idT, and each nucleotide of the start CGGG and the end GCCC is modified with 2'-OMe.
  • PEG40K-aptscl56 is further connected to PEG40K (PEG with a molecular weight of 40,000) at the 5'-end.
  • aptscl56 and PEG40K-aptscl56 were administered 6-month-old female primitive Sprague-Dawley rats, which were fed a standard laboratory diet ad libitum and reared under controlled conditions (12-hour photoperiod , 20°C). Rats were treated with 6.1 mg/kg aptscl56 and 25 mg/kg PEG40K-aptscl56 through a single subcutaneous injection. Aptscl56 and PEG40K-aptscl56 were dissolved in saline at concentrations of 1.6 mg/ml and 6.2 mg/ml, respectively (Judith M. Healy, Ryan M. Boomer et al., 2004).
  • Sample preparation Collect approximately 800 ⁇ l of blood from each rat through the orbital vein, and collect it into a tube containing sodium-heparin as an anticoagulant (1.8ml vacuum container, BD Biosciences), and then immediately place it on wet ice (Healy , Lewis et al. 2004, Perschbacher, Smestad et al. 2015). The plasma was separated by centrifugation at 6000g for 10 minutes at 4°C within 1 hour after collection, and stored at -80°C until analysis (Healy, Lewis et al. 2004, Siller-Matula, Merhi et al. 2012, Gao, Shen et al.2016).
  • HPLC quantification The HPLC system is equipped with a C4 column to quantify PEG40K-aptscl56 in plasma samples collected at different time points, and a C18 column is used to quantify aptscl56.
  • This method uses a mobile phase elution gradient made of phase A (TEAA[pH 7.0]) and phase B (acetonitrile).
  • phase A TEAA[pH 7.0]
  • phase B acetonitrile
  • the flow rate is 1.0 mL/min.
  • the measured injection volume is 20uL.
  • Standards were prepared in blank rat plasma containing different concentrations of aptscl56 and PEG40K-aptscl56 sodium-heparin (Gao, Shen et al., 2016). All reported concentrations of aptscl56 and PEG40K-aptscl56 are based on the quality of aptscl56. Calculate the aptamer concentration in the plasma sample according to the standard curve.
  • Pharmacokinetic analysis Draw Aptscl56 and PEG40K-aptscl56 concentration versus time curves, and analyze each rat by software DAS 3.0 (BioGuider Co., Shanghai, China). Average the obtained pharmacokinetic parameters.
  • the half-life (t1/2) of the aptamer was calculated based on the time required for the aptamer to eliminate half of the maximum plasma concentration (Grieken and Bruin 1994). According to the pharmacokinetic curve, the maximum plasma concentration (C max) and the maximum plasma concentration time (T max) were obtained.
  • the area under the curve (AUC) is calculated from the start of drug administration, and ends when the concentration in plasma is negligible (Rowland, Benet et al.
  • the lower limit of HPLC quantification of aptscl56 is 10ul/mL, and the linear concentration range is from 10 ⁇ g/mL to 360ug/mL.
  • the average elimination half-life (Elim.T1/2) of aptscl56 aptamer in Sprague-Dawley rats after subcutaneous administration was 1.8 hours.
  • the average value of C max is 265.5 ⁇ g/ml, and T max is 0.5 hours ( Figure 10, Table 3).
  • the lower limit of HPLC quantification of PEG40K-aptscl56 is 7.5 ⁇ g/mL, and the linear concentration range is 7.5 ⁇ g/mL to 240 ⁇ g/mL.
  • the average elimination half-life (Elim.T1/2) of PEG40K-aptscl56 in Sprague-Dawley rats after subcutaneous administration was 66.9 hours.
  • the average value of C max is 152.8 ⁇ g/ml, and T max is 72 hours ( Figure 11, Table 4).
  • the dosing interval of a multi-dose aptamer can be defined based on its elimination half-life and the dose ratio of the loading dose to the maintenance dose (Birkett 1996, Jambhekar 2012).
  • the elimination half-life of PEG40K-aptscl56 is 66.9 hours. If the dose ratio is 2, the dosing interval is equal to the elimination half-life (T1/2). If the dose ratio is less than 2, the dosing interval should be longer than T1/2. In the pharmacodynamic study of PEG40K-aptscl56, the recommended dose ratio is 1 (the loading dose is equal to the maintenance dose). Therefore, the administration interval of PEG40K-aptscl56 should be longer than 66.9h.
  • RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor(VEGF165).Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain.”J BiolChem 273(32):20556-20567.

Abstract

An aptamer and an application thereof in diagnosing sclerostin-related diseases; the aptamer comprises a nucleotide sequence having at least about 90% homology, at least about 91% homology, at least about 92% homology, at least about 93% homology, at least about 94% homology, or at least about 95% homology with any one of SEQ ID NOs:1-17, or comprises at least 30, at least 35, at least 40, at least 45, at least 50 or more consecutive nucleotides from any one of SEQ ID NOs: 1-17. The aptamer specifically binds to sclerostin.

Description

针对骨硬化蛋白的适体的诊断用途Diagnostic use of aptamers for osteosclerosin 技术领域Technical field
本发明涉及分子诊断领域。具体而言,本发明涉及针对骨硬化蛋白(sclerostin)的适体的诊断用途。The invention relates to the field of molecular diagnostics. Specifically, the present invention relates to the diagnostic use of aptamers for sclerostin.
发明背景Background of the invention
适体是通过构象互补而与其靶标结合的短单链寡核苷酸(Ellington and Szostak,1990;Tuerk and Gold,1990)。与抗体相比,适体具有相似的亲和力和特异性,但是具有一些重要的优点。对于免疫原性,适体不会被免疫系统识别为外来的,并且因为低分子量而不刺激负面的免疫应答(Keefe,Pai et al.,2010)。就生产和成本而言,适体可以在各种选择条件下在体外鉴定,并且可以通过化学方法容易地合成,因此生产成本更低,风险更低(Banerjee,2010)。就稳定性而言,适体具有无限的保存期限,因为它们温度不敏感,并且在运输过程中没有任何冷却的特殊要求,因此不需要连续的冷链(Jayasena,1999)。Aptamers are short single-stranded oligonucleotides that bind to their targets through conformational complementation (Ellington and Szostak, 1990; Tuerk and Gold, 1990). Compared with antibodies, aptamers have similar affinity and specificity, but have some important advantages. For immunogenicity, aptamers are not recognized as foreign by the immune system, and do not stimulate negative immune responses because of their low molecular weight (Keefe, Pai et al., 2010). In terms of production and cost, aptamers can be identified in vitro under various selection conditions and can be easily synthesized by chemical methods, so production costs are lower and risks are lower (Banerjee, 2010). In terms of stability, aptamers have an infinite shelf life because they are not temperature sensitive and do not have any special cooling requirements during transportation, so there is no need for a continuous cold chain (Jayasena, 1999).
骨硬化蛋白是一种骨形成的负调控因子(Sclerostin),其抑制Wnt信号通路。骨硬化蛋白已经成为骨代谢的一种生物标记物,其体内表达与多种疾病相关联。本领域期望开发针对骨硬化蛋白的适体用于检测骨硬化蛋白和/或诊断骨硬化蛋白相关疾病。Osteosclerostin is a negative regulator of bone formation (Sclerostin), which inhibits the Wnt signaling pathway. Oste sclerostin has become a biomarker of bone metabolism, and its expression in vivo is associated with many diseases. It is expected in the art to develop aptamers for osteosclerosin for detecting osteosclerosin and/or diagnosing osteosclerosin-related diseases.
发明简述Brief description of the invention
在一方面,本发明提供一种检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的方法,包括:In one aspect, the present invention provides a method for detecting the presence and/or the expression level of bone sclerostin in a biological sample, comprising:
a)在针对骨硬化蛋白的适体与骨硬化蛋白之间能够形成复合物的条件下,使所述生物学样品和对照样品分别与针对骨硬化蛋白的适体接触;a) Under the condition that a complex can be formed between the aptamer and the sclerostin, the biological sample and the control sample are respectively contacted with the aptamer for the sclerostin;
b)检测复合物的形成,b) detect the formation of complexes,
其中所述生物学样品与对照样品之间复合物形成的差异指示样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平,Wherein the difference in the formation of the complex between the biological sample and the control sample indicates the presence of bone sclerostin and/or the expression level of bone sclerostin in the sample,
其中所述适体Aptamer
i)包含与SEQ ID NO:1-17中的任一具有至少大约90%相同性、至少大约91%相同性、至少大约92%相同性、至少大约93%相同性、至少大约94%相同性或至少大约95%相同性的核苷酸序列,或者,i) Contains at least about 90% identity, at least about 91% identity, at least about 92% identity, at least about 93% identity, at least about 94% identity with any of SEQ ID NO: 1-17 Or a nucleotide sequence that is at least about 95% identical, or,
ii)包含SEQ ID NO:1-17中的任一中的至少30个、至少35个、至少40个、至少45个、至少50个或更多个连续的核苷酸,ii) comprising at least 30, at least 35, at least 40, at least 45, at least 50 or more consecutive nucleotides in any one of SEQ ID NO: 1-17,
优选地,所述适体包含SEQ ID NO:1-17或19-24中任一的序列,Preferably, the aptamer comprises the sequence of any one of SEQ ID NO: 1-17 or 19-24,
其中所述适体特异性结合骨硬化蛋白。The aptamer specifically binds to bone sclerostin.
在一些实施方案中,所述适体对骨硬化蛋白具有小于100nM,优选小于50nM,优选小于40nM,优选小于30nM,优选小于20nM,优选小于10nM或更小的K dIn some embodiments, the aptamer has a K d for osteosclerosin of less than 100 nM, preferably less than 50 nM, preferably less than 40 nM, preferably less than 30 nM, preferably less than 20 nM, preferably less than 10 nM or less.
在一些实施方案中,所述针对骨硬化蛋白的适体缀合有可用于检测的荧光染料、化学物质、多肽、酶、同位素或标签。In some embodiments, the aptamer for osteosclerosin is conjugated with fluorescent dyes, chemicals, polypeptides, enzymes, isotopes, or tags that can be used for detection.
在一些实施方案中,所述适体还包含一或多种赋予所述适体增强的核酸酶抗性和/或增强所述适体的体内半衰期的修饰。在一些实施方案中,所述修饰包括3’反向脱氧胸苷(3’idT)修饰。在一些实施方案中,所述修饰包括用经修饰的核苷酸取代一或多个天然存在的核苷酸,所述经修饰的核苷酸选自2’-氟、2’-甲氧乙基、2’-甲氧基或2’丙烯氧基修饰的核苷酸,优选2’-甲氧基修饰的核苷酸。在一些实施方案中,所述修饰包括核苷酸间的修饰,例如核苷酸间的硫代磷酸酯键修饰。在一些实施方案中,所述修饰包括PEG修饰。在一些实施方案中,所述适体包含2’-甲氧基(2’-OMe)修饰、3’反向脱氧胸苷(3’idT)修饰和/或PEG修饰。In some embodiments, the aptamer further comprises one or more modifications that confer enhanced nuclease resistance to the aptamer and/or enhance the half-life of the aptamer in vivo. In some embodiments, the modification includes a 3' inverse deoxythymidine (3'idT) modification. In some embodiments, the modification includes replacing one or more naturally occurring nucleotides with modified nucleotides selected from the group consisting of 2'-fluoro, 2'-methoxyethyl , 2'-methoxy or 2'propenoxy modified nucleotides, preferably 2'-methoxy modified nucleotides. In some embodiments, the modification includes an internucleotide modification, such as an internucleotide phosphorothioate bond modification. In some embodiments, the modification includes PEG modification. In some embodiments, the aptamer comprises 2'-methoxy (2'-OMe) modification, 3'inverted deoxythymidine (3'idT) modification and/or PEG modification.
在另一方面,本发明还提供在对象中诊断骨硬化蛋白相关疾病的方法,所述方法包括使用如上所定义的针对骨硬化蛋白的适体检测来自疑似患有骨硬化蛋白相关疾病的对象的生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平,所述骨硬化蛋白的存在和/或骨硬化蛋白的表达水平代表骨硬化蛋白相关疾病的存在和/或状态。In another aspect, the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject, the method comprising using the aptamer for sclerostin as defined above to detect a patient suspected of having a disease related to bone sclerostin. The presence of bone sclerostin and/or the expression level of bone sclerostin in the biological sample represents the existence and/or state of bone sclerostin-related diseases.
在另一方面,本发明还提供在对象中诊断骨硬化蛋白相关疾病的方法,所述方法将如上所定义的针对骨硬化蛋白的适体施用至疑似患有骨硬化蛋白相关疾病的对象,然后检测所述对象体内所述适体的积聚,从而诊断骨硬化蛋白相关疾病。在一些实施方案中,检测所述对象体内所述适体的积 聚通过对所述对象成像来实现,所述适体例如用同位素标记。In another aspect, the present invention also provides a method for diagnosing osteosclerosin-related diseases in a subject by administering an aptamer for osteosclerosin as defined above to a subject suspected of suffering from osteosclerosin-related diseases, and then The accumulation of the aptamer in the subject is detected, thereby diagnosing a disease related to osteosclerosis. In some embodiments, detecting the accumulation of the aptamer in the subject is achieved by imaging the subject, the aptamer being labeled with an isotope, for example.
在一方面,本发明提供如上所定义的针对骨硬化蛋白的适体在制备用于检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的试剂盒中的用途。In one aspect, the present invention provides the use of the above-defined aptamer for sclerostin in preparing a kit for detecting the presence of sclerostin in a biological sample and/or the expression level of sclerostin.
在另一方面,本发明还提供如上所定义的针对骨硬化蛋白的适体在制备用于在对象中诊断骨硬化蛋白相关疾病的试剂盒中的用途。In another aspect, the present invention also provides the use of the aptamer for osteosclerosin as defined above in the preparation of a kit for diagnosing osteosclerosis-related diseases in a subject.
在本发明各方面的一些实施方案中,所述骨硬化蛋白相关疾病例如是对象中骨硬化蛋白表达水平异常的疾病。In some embodiments of various aspects of the present invention, the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin in a subject is abnormal.
在另一方面,本发明提供一种用于本发明的检测方法和/或诊断方法的试剂盒,所述试剂盒包含上文所定义的针对骨硬化蛋白的适体,用于检测所述针对骨硬化蛋白的适体的存在和/或量的试剂,以及使用说明。In another aspect, the present invention provides a kit for use in the detection method and/or diagnosis method of the present invention, the kit comprising the above-defined aptamer for osteosclerosis, for detecting the The presence and/or amount of the aptamer for osteosclerosin, and instructions for use.
附图简述Brief description of the drawings
图1示出通过SELEX富集骨硬化蛋白高亲和力适体。(A)富集的ssDNA和未选择的文库对硬骨素的结合亲和力。(B)富集的ssDNA文库和未选择的文库与对照蛋白质的结合亲和力。Figure 1 shows the enrichment of high-affinity aptamers for sclerostin by SELEX. (A) The binding affinity of the enriched ssDNA and unselected libraries to sclerostin. (B) The binding affinity of the enriched ssDNA library and the unselected library to the control protein.
图2示出适体候选物的特异性表征。相比于与肝细胞和PBMC的结合,适体候选物显示对人骨硬化蛋白的高选择性。Figure 2 shows the specific characterization of aptamer candidates. Compared with binding to hepatocytes and PBMC, the aptamer candidates show high selectivity for human osteosclerosis.
图3示出从具有40nt随机区域的ssDNA文库鉴定的适体候选物对重组人骨硬化蛋白的亲和力。通过非线性曲线拟合分析计算适体候选物和抗体对骨硬化蛋白的解离常数(Kd)。各适体候选物对骨硬化蛋白的Kd值分别是:aptscl 6为4.2nM,aptscl 9为3.4nM,aptscl 15为45.6nM,aptscl 46为43.1nM,aptscl 56为43.1nM和aptscl 132为42.2nM。抗骨硬化蛋白抗体的Kd值为3.55nM。Figure 3 shows the affinity of the aptamer candidates identified from the ssDNA library with a 40 nt random region to recombinant human sclerostin. The dissociation constant (Kd) of aptamer candidates and antibodies to osteosclerosin was calculated by nonlinear curve fitting analysis. The Kd values of each aptamer candidate for bone sclerostin are: aptscl 6 is 4.2 nM, aptscl 9 is 3.4 nM, aptscl 15 is 45.6 nM, aptscl 46 is 43.1 nM, aptscl 56 is 43.1 nM and aptscl 132 is 42.2 nM. . The Kd value of the anti-sclerosin antibody is 3.55 nM.
图4示出从具有25nt随机区域的ssDNA文库鉴定的适配体候选物与重组人骨硬化蛋白的结合亲和力。通过非线性曲线拟合分析计算各候选物的解离常数(Kd)。各适体候选物和抗体的Kd值分别为:aptscl 32为0.18nM,aptscl 29为0.28nM,aptscl 22为0.76nM,aptscl 16为0.22,aptscl 3为0.04nM,aptscl 2为0.006nM,aptscl 1为0.02nM。抗骨硬化蛋白抗体的Kd值为3.55nM。Figure 4 shows the binding affinity of aptamer candidates identified from the ssDNA library with 25 nt random regions to recombinant human osteosclerosis. The dissociation constant (Kd) of each candidate was calculated by nonlinear curve fitting analysis. The Kd values of each aptamer candidate and antibody are: aptscl 32 is 0.18 nM, aptscl 29 is 0.28 nM, aptscl 22 is 0.76 nM, aptscl 16 is 0.22, aptscl 3 is 0.04 nM, aptscl 2 is 0.006 nM, aptscl 1 It is 0.02nM. The Kd value of the anti-sclerosin antibody is 3.55 nM.
图5示出使用TOP-Wnt诱导的萤光素酶报道基因测定评估适体候选物 和抗体的抑制能力。(A)与抗体比较,用适体候选物处理的MC3T3-E1细胞中Wnt信号传导介导的荧光素酶活性。Aptscl 56、aptscl 6、aptscl 3和抗骨硬化蛋白抗体能有效抑制骨硬化蛋白对Wnt信号传导的拮抗作用,并释放Wnt诱导的荧光素酶活性。当aptscl 56和aptscl 6的浓度分别达到25μg/ml和47.4μg/ml时,响应达到稳定。而当用抗体处理时,在该实验中浓度增加到20mg/ml时,响应仍未稳定。(B)aptscl 56的抑制能力分析,aptscl 56的EC50为19.7μg/ml。(C)aptscl 6的抑制能力分析,aptscl 6的EC50 36.8μg/ml。(D)aptscl 3的抑制能力分析,aptscl 3的EC50 18.2μg/ml。Figure 5 shows the use of TOP-Wnt-induced luciferase reporter gene assay to evaluate the inhibitory ability of aptamer candidates and antibodies. (A) Compared with antibodies, Wnt signaling-mediated luciferase activity in MC3T3-E1 cells treated with aptamer candidates. Aptscl 56, aptscl 6, aptscl 3 and anti-oste sclerostin antibodies can effectively inhibit the antagonistic effect of bone sclerostin on Wnt signaling and release Wnt-induced luciferase activity. When the concentration of aptscl 56 and aptscl 6 reached 25μg/ml and 47.4μg/ml, the response reached a stable level. When treated with antibodies, the response was still not stable when the concentration was increased to 20 mg/ml in this experiment. (B) Analysis of the inhibitory ability of aptscl 56, the EC50 of aptscl 56 is 19.7 μg/ml. (C) Analysis of the inhibitory ability of aptscl 6, the EC50 of aptscl 6 is 36.8 μg/ml. (D) Analysis of the inhibition ability of aptscl 3, the EC50 of aptscl 3 is 18.2μg/ml.
图6示出截短的aptscl3与骨硬化蛋白结合的表征。(A)aptscl3-1、-2、-3、-4和-5对骨硬化蛋白保持高亲和力,而aptscl3-6显示对硬化蛋白的低结合能力并且不能拟合亲和力分析曲线;(B)截短的aptscl3-5仍保持高结合亲和力,保留了对骨硬化蛋白拮抗细胞中Wnt信号传导途径的高抑制效力(EC50=28.4μg/ml)。Figure 6 shows the characterization of the binding of truncated aptscl3 to bone sclerostin. (A) aptscl3-1, -2, -3, -4, and -5 maintain high affinity for sclerostin, while aptscl3-6 shows low binding ability to sclerostin and cannot fit the affinity analysis curve; (B) cut The short aptscl3-5 still maintains a high binding affinity and retains a high inhibitory effect (EC50=28.4μg/ml) on the Wnt signaling pathway in the antagonistic cells of bone sclerostin.
图7示出与未修饰的aptscl56相比,修饰的aptscl56的血清稳定性评估。所有适体均用10%和100%小鼠血清处理0至72小时。在10%小鼠血清中孵育48小时后,几乎所有未修饰的aptscl56降解。2'-OMe和3'-idT修饰的aptscl56可在10%小鼠血清中保持48小时。在100%血清中,未修饰的aptscl56在8小时后迅速完全降解;在72小时,仍然保留少量的修饰的适体。Figure 7 shows the serum stability assessment of modified aptscl56 compared to unmodified aptscl56. All aptamers were treated with 10% and 100% mouse serum for 0 to 72 hours. After 48 hours of incubation in 10% mouse serum, almost all unmodified aptscl56 was degraded. 2'-OMe and 3'-idT modified aptscl56 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl56 was rapidly and completely degraded after 8 hours; at 72 hours, a small amount of modified aptamers remained.
图8示出与未修饰的aptscl3-5相比,修饰的aptscl3-5的血清稳定性评估。所有适体均用10%和100%小鼠血清处理0至72小时。在10%小鼠血清中孵育24小时后,Aptscl3-5降解。2'-OMe和3'-idT修饰的aptscl3-5可在10%小鼠血清中保持48小时。在100%血清中,未修饰的aptscl3-5在8小时后迅速完全降解,而修饰的aptscl3-5在72小时后仍保持完整性。Figure 8 shows the serum stability assessment of modified aptscl3-5 compared to unmodified aptscl3-5. All aptamers were treated with 10% and 100% mouse serum for 0 to 72 hours. After 24 hours of incubation in 10% mouse serum, Aptscl3-5 was degraded. 2'-OMe and 3'-idT modified aptscl3-5 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl3-5 was completely degraded rapidly after 8 hours, while modified aptscl3-5 remained intact after 72 hours.
图9示出化学修饰的aptscl56和aptscl3-5的亲和力和抑制效力。在化学修饰后,aptscl56和aptscl3-5都保持对骨硬化蛋白的高亲和力和体外抑制效力。Figure 9 shows the affinity and inhibitory efficacy of chemically modified aptscl56 and aptscl3-5. After chemical modification, both aptscl56 and aptscl3-5 maintained high affinity to osteosclerosis and in vitro inhibitory efficacy.
图10示出在6只大鼠中单次皮下注射Aptscl56的药代动力学:通过软件DAS拟合的药代动力学曲线(左)、实际药代动力学曲线(右)。Figure 10 shows the pharmacokinetics of a single subcutaneous injection of Aptscl56 in 6 rats: the pharmacokinetic curve fitted by the software DAS (left) and the actual pharmacokinetic curve (right).
图11示出在6只大鼠中单次皮下注射PEG40K-aptscl56的药代动力学:通过软件DAS拟合的药代动力学曲线(左)、实际药代动力学曲线(右)。Figure 11 shows the pharmacokinetics of a single subcutaneous injection of PEG40K-aptscl56 in 6 rats: the pharmacokinetic curve fitted by the software DAS (left) and the actual pharmacokinetic curve (right).
图12示出分别在大鼠中单次皮下注射Aptscl56和PEG40K-aptscl56的药代动力学。Figure 12 shows the pharmacokinetics of a single subcutaneous injection of Aptscl56 and PEG40K-aptscl56 in rats.
发明详述Detailed description of the invention
除非另有指示或定义,否则所有所用术语均具有本领域中的通常含义,该含义将为本领域技术人员所了解。参考例如标准手册,如Sambrook et al.,“Molecular Cloning:A Laboratory Manual”;Lewin,“Genes VIII”;及Roitt et al.,“Immunology”(第8版),以及本文中引用的一般现有技术;此外,除非另有说明,否则未具体详述的所有方法、步骤、技术及操作均可以且已经以本身已知的方式进行,该方式将为本领域技术人员所了解。亦参考例如标准手册、上述一般现有技术及其中引用的其他参考文献。Unless otherwise indicated or defined, all terms used have their usual meanings in the art, and this meaning will be understood by those skilled in the art. Refer to standard manuals such as Sambrook et al., "Molecular Cloning: A Laboratory Manual"; Lewin, "Genes VIII"; and Roitt et al., "Immunology" (8th edition), as well as general existing references in this article Technology; In addition, unless otherwise specified, all methods, steps, technologies and operations not specifically detailed can be and have been performed in a manner known per se, which will be understood by those skilled in the art. Also refer to, for example, the standard manual, the above-mentioned general prior art and other references cited therein.
定义definition
如本文所用,术语“核苷酸”是指核糖核苷酸或脱氧核糖核苷酸,或其修饰的形式及其类似物。核苷酸包括种类,其包括嘌呤(例如,腺嘌呤、次黄嘌呤、鸟嘌呤和它们的衍生物和类似物)以及嘧啶(例如,胞嘧啶、尿嘧啶、胸腺嘧啶和它们的衍生物和类似物)。As used herein, the term "nucleotide" refers to ribonucleotides or deoxyribonucleotides, or modified forms and analogs thereof. Nucleotides include species, including purines (for example, adenine, hypoxanthine, guanine and their derivatives and analogs) and pyrimidines (for example, cytosine, uracil, thymine, and their derivatives and analogs)物).
在本文中,互换地使用“核酸”、“寡核苷酸”和“多核苷酸”来指核苷酸的聚合物,并包括DNA、RNA、DNA/RNA杂交体和这些种类的核酸、寡核苷酸和多核苷酸的修饰,其中包括在所述核苷酸单位的任何位置上附加各种实体或部分。术语“多核苷酸”、“寡核苷酸”和“核酸”包括双或单链分子。核酸、寡核苷酸和多核苷酸是比术语适体更宽的术语,因此术语核酸、寡核苷酸和多核苷酸包括适体但不限于适体。In this article, "nucleic acid", "oligonucleotide" and "polynucleotide" are used interchangeably to refer to polymers of nucleotides, and include DNA, RNA, DNA/RNA hybrids and these types of nucleic acids, The modification of oligonucleotides and polynucleotides includes appending various entities or parts to any position of the nucleotide unit. The terms "polynucleotide", "oligonucleotide" and "nucleic acid" include double or single stranded molecules. Nucleic acid, oligonucleotide and polynucleotide are broader terms than the term aptamer, so the terms nucleic acid, oligonucleotide and polynucleotide include but are not limited to aptamer.
如本文所用,“适体”指具有期望的对靶分子的作用的非天然存在的核酸。期望的作用包括但不限于与所述靶结合、催化改变所述靶、以修饰或改变所述靶或所述靶的功能活性的方式与靶反应、共价地连接所述靶和促进所述靶与其他分子间的反应。在一些实施方案中,所述作用是针对靶分子(例如骨硬化蛋白)的特异性结合亲和力,这样的靶分子是三维化学结构而不是多核苷酸,其通过不依赖于Watson/Crick碱基配对或三重螺旋形成的机制来结合所述适体,其中所述适体不是具有被所述靶分子结合的已知生理功能的核酸。在本上下文中,适体针对其靶(例如骨硬化蛋白)的“特异性 结合”是指所述适体通常以比其结合至混合物或样品中其他的非靶组分高得多的亲和力来结合至其靶。As used herein, "aptamer" refers to a non-naturally occurring nucleic acid that has a desired effect on a target molecule. The desired effects include, but are not limited to, binding to the target, catalytically changing the target, reacting with the target in a manner that modifies or alters the target or the functional activity of the target, covalently connecting the target and promoting the target The reaction between the target and other molecules. In some embodiments, the effect is specific binding affinity for a target molecule (such as osteosclerosin), such a target molecule is a three-dimensional chemical structure rather than a polynucleotide, which does not rely on Watson/Crick base pairing. Or the mechanism of triple helix formation to bind the aptamer, wherein the aptamer is not a nucleic acid with a known physiological function bound by the target molecule. In this context, the "specific binding" of an aptamer to its target (such as osteosclerosin) means that the aptamer usually binds with a much higher affinity than other non-target components in the mixture or sample. Binding to its target.
序列“相同性”具有本领域公认的含义,并且可以利用公开的技术计算两个核酸或多肽分子或区域之间序列相同性的百分比。可以沿着多核苷酸或多肽的全长或者沿着该分子的区域测量序列相同性。(参见,例如:Computational Molecular Biology,Lesk,A.M.,ed.,Oxford University Press,New York,1988;Biocomputing:Informatics and Genome Projects,Smith,D.W.,ed.,Academic Press,New York,1993;Computer Analysis of Sequence Data,Part I,Griffin,A.M.,and Griffin,H.G.,eds.,Humana Press,New Jersey,1994;Sequence Analysis in Molecular Biology,von Heinje,G.,Academic Press,1987;and Sequence Analysis Primer,Gribskov,M.and Devereux,J.,eds.,M Stockton Press,New York,1991)。虽然存在许多测量两个多核苷酸或多肽之间的相同性的方法,但是术语“相同性”是技术人员公知的(Carrillo,H.&Lipman,D.,SIAM J Applied Math 48:1073(1988))。许多算法可用于确定序列相同性百分比。适合于确定序列相同性百分比的算法的一个实例是在基本局部比对搜索工具(以下为“BLAST”)中使用的算法,见例如Altschul等人,J.Mol.Biol.215:403-410,1990和Altschul等人,Nucleic Acids Res.,15:3389-3402,1997。进行BLAST分析的软件是通过国家生物技术信息中心(以下为“NCBI”)公开地可获得的。在使用从NCBI可获得的软件(如针对核酸序列的BLASTN)来确定序列相同性所使用的默认参数在McGinnis等人Nucleic Acids Res.,32:W20-W25,2004中有所描述。Sequence "identity" has the art-recognized meaning, and the percentage of sequence identity between two nucleic acid or polypeptide molecules or regions can be calculated using disclosed techniques. Sequence identity can be measured along the entire length of a polynucleotide or polypeptide or along a region of the molecule. (See, for example: Computational Molecular Biology, Lesk, AM, ed., Oxford University Press, New York, 1988; Biocomputing: Informatics and Genome Projects, Smith, DW, ed., Academic Press, New York, 1993; Computer Analysis of Sequence Data, Part I, Griffin, AM, and Griffin, HG, eds., Humana Press, New Jersey, 1994; Sequence Analysis in Molecular Biology, von Heinje, G., Academic Press, 1987; and Sequence Analysis Primer, Gribskov, M. and Devereux, J., eds., M Stockton Press, New York, 1991). Although there are many methods for measuring the identity between two polynucleotides or polypeptides, the term "identity" is well known to the skilled person (Carrillo, H. & Lipman, D., SIAM J Applied Math 48:1073 (1988) ). Many algorithms can be used to determine the percent sequence identity. An example of an algorithm suitable for determining the percent sequence identity is the algorithm used in the basic local alignment search tool (hereinafter "BLAST"), see, for example, Altschul et al., J. Mol. Biol. 215:403-410, 1990 and Altschul et al., Nucleic Acids Res., 15: 3389-3402, 1997. The software for performing BLAST analysis is publicly available through the National Center for Biotechnology Information (hereinafter "NCBI"). The default parameters used in determining sequence identity using software available from NCBI (such as BLASTN for nucleic acid sequences) are described in McGinnis et al. Nucleic Acids Res., 32: W20-W25, 2004.
术语“生物学样品”是指获自生物体的任何材料、溶液或混合物。这包括血液(包括全血、白细胞、外周血单核细胞、血浆和血清)、痰液、呼气、尿液、精液、唾液、脑膜液、羊水、腺液、淋巴液、乳头抽吸液、支气管抽吸液、滑液、关节抽吸液、细胞、细胞提取物和脑脊髓液。这还包括所有前述物质的用实验分离的部分。术语“生物学样品”还包括例如含有均质化固体材料(诸如来自于粪便样品、组织样品或组织活检)的材料、溶液或混合物。术语“生物样品”还包括来源于细胞系、组织培养物、细胞培养物、细菌培养物、病毒培养物或无细胞生物系统的材料、溶液或混合物。The term "biological sample" refers to any material, solution or mixture obtained from an organism. This includes blood (including whole blood, white blood cells, peripheral blood mononuclear cells, plasma, and serum), sputum, exhalation, urine, semen, saliva, meningeal fluid, amniotic fluid, glandular fluid, lymph, nipple aspiration fluid, Bronchial aspiration fluid, synovial fluid, joint aspiration fluid, cells, cell extracts and cerebrospinal fluid. This also includes the experimentally separated parts of all the aforementioned substances. The term "biological sample" also includes, for example, materials, solutions or mixtures containing homogenized solid materials (such as from stool samples, tissue samples, or tissue biopsies). The term "biological sample" also includes materials, solutions or mixtures derived from cell lines, tissue cultures, cell cultures, bacterial cultures, virus cultures, or cell-free biological systems.
针对骨硬化蛋白的适体Aptamer for sclerostin
本发明人基于蛋白质-SELEX技术,采用骨硬化蛋白作为靶蛋白正向筛选,并采用不相关蛋白进行负筛选,最终选择出以高亲和力特异性地结合骨硬化蛋白的适体。本文所述骨硬化蛋白优选是人骨硬化蛋白,例如,氨基酸序列示于SEQ ID NO:18的骨硬化蛋白。Based on the protein-SELEX technology, the present inventors used osteosclerosin as the target protein for positive screening, and used unrelated proteins for negative screening, and finally selected aptamers that specifically bind to osteosclerosin with high affinity. The sclerostin described herein is preferably human sclerostin, for example, the sclerostin whose amino acid sequence is shown in SEQ ID NO: 18.
示例性人骨硬化蛋白氨基酸序列:Exemplary human sclerostin amino acid sequence:
Figure PCTCN2019074763-appb-000001
Figure PCTCN2019074763-appb-000001
因此,在一方面,本发明提供针对骨硬化蛋白的适体,所述适体包含与SEQ ID NO:1-17中的任一具有至少大约90%相同性、至少大约91%相同性、至少大约92%相同性、至少大约93%相同性、至少大约94%相同性、至少大约95%相同性、至少大约96%相同性、至少大约97%相同性、至少大约98%相同性或至少大约99%相同性的核苷酸序列,或者,所述适体包含SEQ ID NO:1-17中的任一中的至少30个、至少35个、至少40个、至少45个、至少50个或更多个连续的核苷酸。在一些实施方案中,所述适体特异性结合骨硬化蛋白。在一些优选实施方案中,所述适体包含SEQ ID NO:1-17和19-24中的任一的核苷酸序列,更优选地,所述适体包含SEQ ID NO:1、3、10或19-23之一的核苷酸序列。Therefore, in one aspect, the present invention provides an aptamer for osteosclerosin, the aptamer comprising at least about 90% identity, at least about 91% identity, at least about 90% identity to any of SEQ ID NO: 1-17 About 92% identity, at least about 93% identity, at least about 94% identity, at least about 95% identity, at least about 96% identity, at least about 97% identity, at least about 98% identity, or at least about 99% identical nucleotide sequence, or the aptamer comprises at least 30, at least 35, at least 40, at least 45, at least 50, or any of SEQ ID NO: 1-17 More consecutive nucleotides. In some embodiments, the aptamer specifically binds bone sclerostin. In some preferred embodiments, the aptamer comprises the nucleotide sequence of any one of SEQ ID NO: 1-17 and 19-24, more preferably, the aptamer comprises SEQ ID NO: 1, 3, The nucleotide sequence of one of 10 or 19-23.
在一些实施方案中,本发明的所述适体对骨硬化蛋白具有小于100nM,优选小于50nM,优选小于40nM,优选小于30nM,优选小于20nM,优选小于10nM或更小的K d(解离常数)。所述K d例如通过酶联寡核苷酸测定法(ELONA)测定。 In some embodiments, the aptamer of the present invention has less than 100 nM, preferably less than 50 nM, preferably less than 40 nM, preferably less than 30 nM, preferably less than 20 nM, preferably less than 10 nM or less K d (dissociation constant ). The K d is measured by, for example, an enzyme-linked oligonucleotide assay (ELONA).
在一些实施方案中,本发明的所述适体还可以包含一或多种修饰。例如,所述修饰是赋予所述适体增强的核酸酶抗性和/或增强所述适体的体内半衰期的修饰。In some embodiments, the aptamer of the present invention may also include one or more modifications. For example, the modification is a modification that confers enhanced nuclease resistance to the aptamer and/or enhances the half-life of the aptamer in vivo.
所述修饰包括例如3’和5’的修饰,如3’和5’加帽。在一些实施方案中,所述适体在3’末端用反向脱氧胸苷加帽,即3’反向脱氧胸苷(3’idT)修饰。The modification includes, for example, 3'and 5'modification, such as 3'and 5'capping. In some embodiments, the aptamer is capped with inverted deoxythymidine at the 3'end, that is, 3'inverted deoxythymidine (3'idT) is modified.
所述修饰还可以包括用经修饰的核苷酸取代一或多个天然存在的核苷酸。例如,所述经修饰的核苷酸包括但不限于2’-氟、2’-甲氧乙基、2’-甲氧 基和/或2’丙烯氧基修饰的核苷酸(即核糖的2’位置羟基被氟、甲氧乙基、甲氧基或丙烯氧基等取代)。所述经修饰的核苷酸还可以包括C-5修饰的嘧啶。术语“C-5修饰的嘧啶”是指C-5位上有修饰的嘧啶。C-5修饰的嘧啶能够增强寡核苷酸的核酸酶抗性,且是本领域已知的,例如可以参见国际专利申请WO 2011/130195及其引用的文献。在一些优选实施方式中,所述修饰是2’-甲氧基(2’-OMe)修饰。在一些实施方式中,在适体的5’和/或3’端的一或多个,例如4个核苷酸进行所示修饰,例如2’-甲氧基(2’-OMe)修饰。The modification may also include the replacement of one or more naturally occurring nucleotides with modified nucleotides. For example, the modified nucleotides include, but are not limited to, 2'-fluoro, 2'-methoxyethyl, 2'-methoxy and/or 2'propyleneoxy modified nucleotides (ie, ribose The 2'-position hydroxyl group is substituted by fluorine, methoxyethyl, methoxy or propyleneoxy, etc.). The modified nucleotides may also include C-5 modified pyrimidines. The term "C-5 modified pyrimidine" refers to a pyrimidine with a modification at the C-5 position. C-5 modified pyrimidines can enhance the nuclease resistance of oligonucleotides and are known in the art. For example, refer to International Patent Application WO 2011/130195 and its cited documents. In some preferred embodiments, the modification is a 2'-methoxy (2'-OMe) modification. In some embodiments, one or more, such as 4 nucleotides, at the 5'and/or 3'end of the aptamer are modified as indicated, such as 2'-methoxy (2'-OMe) modification.
所述修饰还包括核苷酸间的修饰,例如具有不带电荷的键(例如甲基膦酸酯、磷酸三酯、磷酸胺酯、氨基甲酸酯等)的核苷酸间修饰和具有带电荷的键(例如硫代磷酸酯、二硫代磷酸酯等)的核苷酸间修饰,有嵌入剂(例如吖啶、补骨脂素等)的核苷酸间修饰,含有螯合剂(例如金属、放射性金属、硼、氧化性金属等)的核苷酸间修饰,含有烷化剂的核苷酸间修饰和有修饰的键(例如阿尔法异头核酸等)的核苷酸间修饰。The modifications also include internucleotide modifications, such as those with uncharged bonds (such as methyl phosphonate, phosphotriester, phosphoamine ester, carbamate, etc.) and those with Internucleotide modification of charged bonds (such as phosphorothioate, phosphorodithioate, etc.), internucleotide modification of intercalating agents (such as acridine, psoralen, etc.), containing chelating agents (such as Metals, radioactive metals, boron, oxidizing metals, etc.) internucleotide modifications, internucleotide modifications containing alkylating agents, and internucleotide modifications with modified bonds (for example, alpha anomeric nucleic acid, etc.).
所述修饰还可以包括聚乙二醇化修饰(PEG修饰)。通过与PEG缀合可以延长适体的半衰期。在一些实施方式中,所述PEG的分子量为大约1kDa至大约100kDa,例如大约10kDa至大约80kDa,大约20kDa至大约60kDa,大约30kDa至大约50kDa,大约40kDa。在一些实施方案中,所述PEG可以缀合至适体的5’端。在一些实施方案中,所述PEG可以缀合至适体的3’端。The modification may also include pegylation modification (PEG modification). Conjugation with PEG can extend the half-life of the aptamer. In some embodiments, the molecular weight of the PEG is about 1 kDa to about 100 kDa, for example, about 10 kDa to about 80 kDa, about 20 kDa to about 60 kDa, about 30 kDa to about 50 kDa, about 40 kDa. In some embodiments, the PEG may be conjugated to the 5' end of the aptamer. In some embodiments, the PEG may be conjugated to the 3' end of the aptamer.
在一些实施方案中,所述适体可以包含上述多种修饰的组合。例如,所述适体可以包含2’-甲氧基(2’-OMe)修饰、3’反向脱氧胸苷(3’idT)修饰和/或PEG修饰。优选地,所述PEG分子量为大约40kDa。In some embodiments, the aptamer may comprise a combination of various modifications described above. For example, the aptamer may include 2'-methoxy (2'-OMe) modification, 3'inverse deoxythymidine (3'idT) modification and/or PEG modification. Preferably, the molecular weight of the PEG is about 40 kDa.
骨硬化蛋白的检测Detection of bone sclerostin
在另一方面,基于本发明的适体对骨硬化蛋白的高度特异性结合,本发明还提供一种检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的方法,包括:In another aspect, based on the highly specific binding of the aptamer of the present invention to bone sclerostin, the present invention also provides a method for detecting the presence of sclerostin and/or the expression level of sclerostin in a biological sample, including :
a)在本发明的针对骨硬化蛋白的适体与骨硬化蛋白之间能够形成复合物的条件下,使所述生物学样品和对照样品分别与本发明的针对骨硬化蛋白的适体接触;a) Under the condition that a complex can be formed between the aptamer for bone sclerostin of the present invention and the bone sclerostin, the biological sample and the control sample are respectively contacted with the aptamer for bone sclerostin of the present invention;
b)检测复合物的形成,b) detect the formation of complexes,
其中所述生物学样品与对照样品之间复合物形成的差异指示样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平。对照样品的选择属于本领域技术人员的常规技能,并且可以根据实际需要来确定。所述生物学样品可以选自血清、血浆、全血、关节液等。Wherein the difference in the formation of the complex between the biological sample and the control sample indicates the presence of osteosclerosin and/or the expression level of osteosclerosin in the sample. The selection of the control sample belongs to the routine skills of those skilled in the art and can be determined according to actual needs. The biological sample can be selected from serum, plasma, whole blood, synovial fluid and the like.
在一些实施方案中,所述适体缀合有可用于检测的荧光染料、化学物质、多肽、酶、同位素、标签等。In some embodiments, the aptamer is conjugated with fluorescent dyes, chemicals, polypeptides, enzymes, isotopes, tags, etc. that can be used for detection.
本领域已知许多基于适体的靶测定方法,这些方法经修改可应用于本发明。Many aptamer-based target determination methods are known in the art, and these methods can be modified and applied to the present invention.
本发明因此还涵盖本发明的针对骨硬化蛋白的适体在制备用于检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的试剂盒中的用途。The present invention therefore also covers the use of the aptamer for osteosclerosin of the present invention in the preparation of a kit for detecting the presence of osteosclerosin in a biological sample and/or the expression level of osteosclerosin.
疾病诊断Disease diagnosis
在另一方面,本发明还提供本发明的针对骨硬化蛋白的适体在制备用于在对象中诊断骨硬化蛋白相关疾病的试剂盒中的用途。在一些实施方案中,所述骨硬化蛋白相关疾病例如是对象中骨硬化蛋白表达水平异常的疾病。In another aspect, the present invention also provides the use of the aptamer for sclerostin of the present invention in preparing a kit for diagnosing a disease related to sclerostin in a subject. In some embodiments, the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
在另一方面,本发明还提供在对象中诊断骨硬化蛋白相关疾病的方法,所述方法包括使用本发明的针对骨硬化蛋白的适体检测来自疑似患有骨硬化蛋白相关疾病的对象的生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平,所述骨硬化蛋白的存在和/或骨硬化蛋白的表达水平代表骨硬化蛋白相关疾病的存在和/或状态。在一些实施方案中,所述骨硬化蛋白相关疾病例如是对象中骨硬化蛋白表达水平异常的疾病。In another aspect, the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject, the method comprising using the aptamer for sclerostin of the present invention to detect organisms from a subject suspected of having a disease related to bone sclerostin. The presence of bone sclerostin and/or the expression level of bone sclerostin in the scientific sample, the presence of bone sclerostin and/or the expression level of bone sclerostin represent the existence and/or state of bone sclerostin-related diseases. In some embodiments, the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
在另一方面,本发明还提供在对象中诊断骨硬化蛋白相关疾病的方法,所述方法将本发明的针对骨硬化蛋白的适体施用至疑似患有骨硬化蛋白相关疾病的对象,然后检测所述对象体内所述适体的积聚,从而诊断骨硬化蛋白相关疾病。在一些实施方案中,检测所述对象体内所述适体的积聚通过对所述对象成像来实现,所述适体例如用同位素标记。在一些实施方案中,所述骨硬化蛋白相关疾病例如是对象中骨硬化蛋白表达水平异常的疾病。In another aspect, the present invention also provides a method for diagnosing a disease related to bone sclerostin in a subject by administering the aptamer for sclerostin of the present invention to a subject suspected of having a disease related to sclerostin, and then detecting Accumulation of the aptamer in the subject, thereby diagnosing osteosclerosis-related diseases. In some embodiments, detecting the accumulation of the aptamer in the subject is achieved by imaging the subject, the aptamer being labeled with an isotope, for example. In some embodiments, the bone sclerostin-related disease is, for example, a disease in which the expression level of bone sclerostin is abnormal in the subject.
如本文所使用,“骨硬化蛋白相关疾病”包括其中骨矿质密度(BMD)相 对于健康对象不正常和/或病理上低的病症。由低BMD和/或骨易碎性表征的疾病包括但不限于:原发性和继发性骨质疏松症、骨质减少、骨软化、成骨不全(OI)、缺血性坏死(骨坏死)、骨折和植入物愈合(牙种植体和髋植入物)、由于其它病症的骨丧失(例如,与HIV感染、癌症和关节炎相关)。其它“骨硬化蛋白相关疾病”包括但不限于:类风湿性关节炎、骨关节炎、关节炎,以及溶骨性病变。As used herein, "oste sclerostin-related diseases" include conditions in which bone mineral density (BMD) is abnormal and/or pathologically low relative to healthy subjects. Diseases characterized by low BMD and/or bone fragility include but are not limited to: primary and secondary osteoporosis, osteopenia, osteomalacia, osteogenesis imperfecta (OI), avascular necrosis (bone Necrosis), fracture and implant healing (dental implants and hip implants), bone loss due to other conditions (for example, related to HIV infection, cancer, and arthritis). Other "sclerosin-related diseases" include, but are not limited to: rheumatoid arthritis, osteoarthritis, arthritis, and osteolytic lesions.
如本文所使用,“骨硬化蛋白相关疾病”包括骨硬化蛋白相关癌症,例如骨髓瘤(例如,伴随溶骨性病变的多发性骨髓瘤)、乳腺癌、结肠癌、黑色素瘤、肝细胞癌、上皮癌、食道癌、脑癌、肺癌、前列腺癌或胰癌,及其任何转移瘤。As used herein, "oste sclerostin-related diseases" include bone sclerostin-related cancers, such as myeloma (e.g., multiple myeloma with osteolytic lesions), breast cancer, colon cancer, melanoma, hepatocellular carcinoma, Epithelial cancer, esophageal cancer, brain cancer, lung cancer, prostate cancer or pancreatic cancer, and any metastases thereof.
“骨硬化蛋白相关疾病”还可包括至少由骨硬化蛋白在肾脏和在心血管中表达而引起的肾病及心血管疾病。所述病症包括但不限于诸如以下的肾病:肾小球疾病(例如,急性和慢性肾小球性肾炎,急进性肾小球性肾炎,肾病综合征,局灶增生性肾小球肾炎,与诸如系统性红斑狼疮、古德帕斯彻氏综合征、多发性骨髓瘤、糖尿病、多囊肾病、瘤形成、镰刀形红细胞病、以及慢性炎症等全身疾病相关的肾小球损害)、肾小管疾病(例如,急性肾小管坏死和急性肾衰竭、多囊肾病、髓质海绵肾、髓质囊性病、肾原性糖尿病,以及肾小管性酸中毒)、小管间质性疾病(例如,肾盂肾炎、药和毒素诱导的小管间质性肾炎、高钙性肾病,以及低钾血症性肾病)、急性和急进性肾衰竭、慢性肾衰竭、肾结石、痛风、血管疾病(例如,高血压和肾硬化、微血管病性溶血性贫血、动脉粥样硬化栓塞肾病、扩散皮层的坏死以及肾梗塞),或肿瘤(例如,肾细胞癌和肾胚细胞瘤)。"Sclerosingrin-related diseases" may also include kidney disease and cardiovascular disease caused by at least the expression of osteosclerosin in the kidney and in the cardiovascular system. The conditions include, but are not limited to, nephropathy such as: glomerular diseases (eg, acute and chronic glomerulonephritis, rapidly progressive glomerulonephritis, nephrotic syndrome, focal proliferative glomerulonephritis, and Systemic diseases such as systemic lupus erythematosus, Goodpasture’s syndrome, multiple myeloma, diabetes, polycystic kidney disease, neoplasia, sickle cell disease, and chronic inflammation and other systemic diseases related to glomerular damage), renal tubules Diseases (for example, acute tubular necrosis and acute renal failure, polycystic kidney disease, medullary sponge kidney, medullary cystic disease, nephrogenic diabetes, and tubular acidosis), tubulointerstitial diseases (for example, pyelonephritis) , Drug and toxin-induced tubulointerstitial nephritis, hypercalcemia nephropathy, and hypokalemic nephropathy), acute and rapidly progressive renal failure, chronic renal failure, kidney stones, gout, vascular diseases (for example, hypertension and Nephrosclerosis, microangiopathic hemolytic anemia, atherosclerotic embolism nephropathy, necrosis of the diffuse cortex, and renal infarction), or tumors (eg, renal cell carcinoma and nephroblastoma).
所述疾病还包括但不限于诸如以下的心血管疾病:缺血性心脏病(例如,心绞痛、心肌梗死,以及慢性缺血性心脏病)、高血压心脏病、肺心病、心脏瓣膜病(例如,风湿热和风湿性心脏病、心内膜炎、二尖瓣脱垂以及主动脉瓣狭窄)、先天性心脏病(例如,瓣和血管堵塞性损害、房或室中隔缺损、以及久存性动脉导管),或心肌病(例如,心肌炎、充血型心肌病,以及肥厚型心肌病)。The diseases also include, but are not limited to, cardiovascular diseases such as: ischemic heart disease (for example, angina pectoris, myocardial infarction, and chronic ischemic heart disease), hypertensive heart disease, pulmonary heart disease, valvular heart disease (for example, , Rheumatic fever and rheumatic heart disease, endocarditis, mitral valve prolapse, and aortic valve stenosis), congenital heart disease (for example, valve and blood vessel occlusion damage, atrioventricular septal defect, and long-standing Arterial duct), or cardiomyopathy (for example, myocarditis, congestive cardiomyopathy, and hypertrophic cardiomyopathy).
所述对象可以是任何动物(驯养的、家畜或野生的),其包括但不限于猫、狗、马、猪和牛,并优选人类对象。如本文中所用,术语患者、个体和对象可以互换地使用。The subject can be any animal (domestic, domestic or wild), including but not limited to cats, dogs, horses, pigs, and cows, and is preferably human subjects. As used herein, the terms patient, individual, and subject can be used interchangeably.
试剂盒Reagent test kit
本发明的范围内还包括用于本发明的检测方法和/或诊断方法的试剂盒,该试剂盒包括本发明的针对骨硬化蛋白的适体,以及使用说明。该试剂盒可以进一步包括至少一种另外的检测试剂,其用于检测本发明的针对骨硬化蛋白的适体的存在和/或量。试剂盒一般包括表明试剂盒内容物的预期用途和/或使用方法的标签,即使用说明。术语标签包括在试剂盒上或与试剂盒一起提供的或以其他方式随试剂盒提供的任何书面的或记录的材料。The scope of the present invention also includes a kit used in the detection method and/or diagnosis method of the present invention, which includes the aptamer for osteosclerosin of the present invention, and instructions for use. The kit may further include at least one additional detection reagent, which is used to detect the presence and/or amount of the aptamer for bone sclerostin of the present invention. The kit generally includes a label indicating the intended use and/or method of use of the contents of the kit, that is, instructions for use. The term label includes any written or recorded material provided on or with the kit or otherwise provided with the kit.
实施例Example
下面将通过实施例的方式进一步说明本发明,但并不因此将本发明限制在所描述的实施例范围中。The following will further illustrate the present invention by way of examples, but the present invention is not limited to the scope of the described examples.
实施例1、通过SELEX富集和筛选针对骨硬化蛋白的高亲和力适体Example 1. Enrichment and screening of high-affinity aptamers for bone sclerostin by SELEX
ssDNA文库中的序列由两端18nt保守区域和一个中央随机区域组成。使用了两个不同长度随机序列的ssDNA文库。长ssDNA文库中的序列包含40nt随机区(5’-CGTACGGTCGACGCTAGC-(N) 40-CACGTGGAGCTCGGATCC-3’),短ssDNA文库中的序列含有25nt随机区(5’-CGTACGGTCGACGCTAGC-(N) 25-CACGTGGAGCTCGGATCC-3’)。合成正向引物(FP:5’-CGTACGGTCGACGCTAGC-3’)和生物素化反向引物(Bio-RP:5’-生物素-GGATCCGAGCTCCACGTG-3’)用于在选择期间扩增ssDNA。所有寡核苷酸在合成后通过HPLC纯化。 The sequence in the ssDNA library consists of 18 nt conserved regions at both ends and a central random region. Two ssDNA libraries with random sequences of different lengths were used. The sequence in the long ssDNA library contains a 40 nt random region (5'-CGTACGGTCGACGCTAGC-(N) 40 -CACGTGGAGCTCGGATCC-3'), and the sequence in the short ssDNA library contains a 25 nt random region (5'-CGTACGGTCGACGCTAGC-(N) 25 -CACGTGGAGCTCGGATCC- 3'). Synthetic forward primer (FP: 5'-CGTACGGTCGACGCTAGC-3') and biotinylated reverse primer (Bio-RP: 5'-Biotin-GGATCCGAGCTCCACGTG-3') were used to amplify ssDNA during selection. All oligonucleotides were purified by HPLC after synthesis.
进行蛋白SELEX方法以鉴定高亲和力适体(Ellington and Szostak,1990;Tuerk and Gold,1990)。100-30皮摩尔的His 6标记的骨硬化蛋白在4℃下1小时固定在NTA磁珠上(Murphy,Fuller et al.,2003)。1纳摩尔ssDNA文库在95℃变性5分钟并迅速冷却至4℃,随后与固定化的骨硬化蛋白在室温孵育0.5-1小时。用洗涤缓冲液除去未结合的序列。洗涤后,收集结合的DNA-蛋白质-NTA,用H 2O/吐温20重悬,并应用于PCR扩增。用未修饰的正向引物和生物素化的反向引物进行PCR扩增(步骤1:95℃初始变性1 分钟;步骤2:95℃变性30秒,56℃退火30秒,72℃延伸30秒,重复12个循环;和步骤3:72℃最后延伸5分钟)。通过生物素-链霉亲和素结合将PCR产物应用于链霉亲和素磁珠。通过用0.2M NaOH处理再生单链序列。针对固定在NTA磁珠上的其他His 6标记的不相关蛋白进行负选择。每种选择共进行20轮SELEX。来自最后一轮的DNA池进行高通量二代序列(NGS)。 The protein SELEX method was performed to identify high-affinity aptamers (Ellington and Szostak, 1990; Tuerk and Gold, 1990). 100-30 picomoles of His 6- labeled osteosclerosin were immobilized on NTA magnetic beads at 4°C for 1 hour (Murphy, Fuller et al., 2003). The 1 nanomolar ssDNA library was denatured at 95°C for 5 minutes and quickly cooled to 4°C, and then incubated with immobilized bone sclerostin at room temperature for 0.5-1 hour. Remove unbound sequences with wash buffer. After washing, the bound DNA-protein-NTA was collected, resuspended in H 2 O/Tween 20, and applied to PCR amplification. Use unmodified forward primers and biotinylated reverse primers for PCR amplification (Step 1: 95°C initial denaturation for 1 minute; Step 2: 95°C denaturation for 30 seconds, 56°C annealing for 30 seconds, and 72°C extension for 30 seconds , Repeat 12 cycles; and step 3: 72°C and finally extend for 5 minutes). The PCR product is applied to streptavidin magnetic beads through biotin-streptavidin binding. The single-stranded sequence was regenerated by treatment with 0.2M NaOH. Negative selection is made for other His 6- labeled irrelevant proteins immobilized on NTA magnetic beads. A total of 20 rounds of SELEX were performed for each option. The DNA pool from the last round was subjected to high-throughput second-generation sequencing (NGS).
图1示出第10轮和第20轮选择之后DNA池对骨硬化蛋白的亲和力增加,表明通过SELEX富集了高亲和力骨硬化蛋白适体。Figure 1 shows that the affinity of the DNA pool to sclerostin increases after the 10th and 20th rounds of selection, indicating that high-affinity sclerostin aptamers are enriched by SELEX.
实施例2、候选骨硬化蛋白适体的特异性鉴定Example 2. Specific identification of candidate osteosclerosis aptamers
根据NGS结果,合成具有高出现频率的代表性适体进行特异性测定。这些适体候选物的详细序列列于表1中。According to the NGS results, representative aptamers with high frequency of occurrence were synthesized for specific determination. The detailed sequences of these aptamer candidates are listed in Table 1.
为了确定适体候选物对骨硬化蛋白的特异性,使用N-末端生物素化修饰合成代表性适体候选物和随机序列(RS)(阴性对照)。每种适体/RS使用1μM通过酶联寡核苷酸测定法(ELONA)测定对骨硬化蛋白的特异性。将160ng纯化的重组人骨硬化蛋白通过在100μl PBS中4℃温育过夜而包被96孔微量滴定板。然后将板用封闭缓冲液(PBS,0.1%吐温20和1%BSA)在室温封闭1小时,并用SELEX B&W缓冲液(PBS,1mM MgCl 2,0.1%吐温20和0.1%BSA)洗涤4次。适体候选物在95℃变性10分钟,在使用前在冰上快速冷却10分钟。每孔加入1μM生物素标记的适体,然后加入SELEX B&W缓冲液至100μl,室温孵育45min,连续温和摇动。结合后,将板用SELEX B&W缓冲液洗涤4次以除去非特异性和非常弱的结合,然后用PBST+0.1%BSA洗涤4次。向每个孔中加入100μl链霉亲和素-HRP/山羊抗人IgG Fc-HRP(1:10000稀释到PBST+0.1%BSA中)并孵育30/60分钟,并用PBST+0.1%BSA洗涤4次。向每个孔中加入50μl TMB并温育20分钟。加入50μl 2M H 2SO 4终止反应。用酶标仪测量450nm处的吸光度(Stoltenburg,Krafcikova et al.,2016)。为了确定适体候选物与肝细胞/PBMC的结合能力,表征步骤与ELONA类似。将300,000个细胞与每种适体候选物一起温育,通过离心进行洗涤和分离。 In order to determine the specificity of aptamer candidates to osteosclerosin, representative aptamer candidates and random sequence (RS) (negative control) were synthesized using N-terminal biotinylation modification. The specificity of each aptamer/RS to osteosclerosin was determined by enzyme-linked oligonucleotide assay (ELONA) using 1 μM. 160 ng of purified recombinant human sclerostin was coated in a 96-well microtiter plate by incubating in 100 μl PBS at 4° C. overnight. Then the plate was blocked with blocking buffer (PBS, 0.1 % Tween 20 and 1% BSA) for 1 hour at room temperature, and washed with SELEX B&W buffer (PBS, 1 mM MgCl 2 , 0.1% Tween 20 and 0.1% BSA) 4 Times. The aptamer candidate was denatured at 95°C for 10 minutes and quickly cooled on ice for 10 minutes before use. Add 1μM biotin-labeled aptamer to each well, then add SELEX B&W buffer to 100μl, incubate at room temperature for 45min, and continue to shake gently. After binding, the plate was washed 4 times with SELEX B&W buffer to remove non-specific and very weak binding, and then washed 4 times with PBST+0.1% BSA. Add 100μl streptavidin-HRP/goat anti-human IgG Fc-HRP (diluted 1:10000 in PBST+0.1%BSA) to each well and incubate for 30/60 minutes, and wash with PBST+0.1%BSA4 Times. Add 50 μl TMB to each well and incubate for 20 minutes. The reaction was stopped by adding 50 μl 2M H 2 SO 4 . The absorbance at 450nm was measured with a microplate reader (Stoltenburg, Krafcikova et al., 2016). In order to determine the binding ability of aptamer candidates to hepatocytes/PBMC, the characterization procedure is similar to ELONA. 300,000 cells were incubated with each aptamer candidate, washed and separated by centrifugation.
结果表明,从长和短ssDNA文库中鉴定的适体候选物在与肝细胞和PBMC的结合比较时显示对人骨硬化蛋白的高选择性(图2)。从长ssDNA 文库鉴定的适体候选物aptscl 6、9、15、27、34、36、46、51、56、132和140,以及从短ssDNA文库鉴定的aptscl 1、2、3、5、8、12、16、22、29和32,显示出对骨硬化蛋白的高结合特异性,因此被选择用于以下亲和力表征。The results showed that the aptamer candidates identified from the long and short ssDNA libraries showed high selectivity to human sclerostin when compared with the binding of hepatocytes and PBMC (Figure 2). Aptamer candidates aptscl 6, 9, 15, 27, 34, 36, 46, 51, 56, 132, and 140 identified from the long ssDNA library, and aptscl 1, 2, 3, 5, 8 identified from the short ssDNA library , 12, 16, 22, 29, and 32, showing high binding specificity to osteosclerosin, so they were selected for the following affinity characterization.
实施例3、候选骨硬化蛋白适体的亲和力鉴定Example 3. Affinity identification of candidate osteosclerosis aptamers
进行酶联寡核苷酸测定(ELONA)以确定适体候选物与骨硬化蛋白的结合亲和力(Drolet,Moon-McDermott et al.,1996)。类似地,进行酶联免疫吸附测定(ELISA)以确定抗骨硬化蛋白抗体(Romosozumab,针对骨硬化蛋白的人源化治疗性抗体,购自Creative Biolabs)对人骨硬化蛋白的结合亲和力(Engvall and Perlmann,1971)。将160ng纯化的重组人硬化蛋白通过在100μl PBS中4℃温育过夜而包被96孔微量滴定板。然后将板用封闭缓冲液(PBS,0.1%吐温20和1%BSA)在室温封闭1小时,并用SELEX B&W缓冲液(PBS,1mM MgCl 2,0.1%吐温20和0.1%BSA)洗涤4次。适体候选物在95℃变性10分钟,在使用前在冰上快速冷却10分钟。将适当浓度的生物素化的适体/抗体加入到每个孔中,然后加入SELEX B&W缓冲液至100μl中,并在室温下温育45分钟,连续温和摇动。结合后,将板用SELEX B&W缓冲液洗涤4次以除去非特异性和非常弱的结合,然后用PBST+0.1%BSA洗涤4次。向每个孔中加入100μl链霉亲和素-HRP/山羊抗人IgG Fc-HRP(1:10000稀释到PBST+0.1%BSA中)并孵育30/60分钟,并用PBST+0.1%BSA洗涤4次。向每个孔中加入50μl TMB并温育20分钟。加入50μl 2M H 2SO 4终止反应。用酶标仪测量450nm处的吸光度(Stoltenburg,Krafcikova et al.,2016)。用Origin软件(OriginLab,Northampton,MA)分析数据。使用非线性曲线拟合模型Hyperbl绘制结合曲线Hyperbl模型的方程是y=P1*x/(P2+x),P2是Kd值。 An enzyme-linked oligonucleotide assay (ELONA) was performed to determine the binding affinity of the aptamer candidate to osteosclerosin (Drolet, Moon-McDermott et al., 1996). Similarly, an enzyme-linked immunosorbent assay (ELISA) was performed to determine the binding affinity of anti-sclerosin antibody (Romosozumab, a humanized therapeutic antibody against bone sclerostin, purchased from Creative Biolabs) to human sclerostin (Engvall and Perlmann , 1971). 160 ng of purified recombinant human sclerostin was coated in a 96-well microtiter plate by incubating in 100 μl PBS at 4° C. overnight. Then the plate was blocked with blocking buffer (PBS, 0.1 % Tween 20 and 1% BSA) for 1 hour at room temperature, and washed with SELEX B&W buffer (PBS, 1 mM MgCl 2 , 0.1% Tween 20 and 0.1% BSA) 4 Times. The aptamer candidate was denatured at 95°C for 10 minutes and quickly cooled on ice for 10 minutes before use. Add the appropriate concentration of biotinylated aptamer/antibody to each well, then add SELEX B&W buffer to 100 μl, and incubate at room temperature for 45 minutes with continuous gentle shaking. After binding, the plate was washed 4 times with SELEX B&W buffer to remove non-specific and very weak binding, and then washed 4 times with PBST+0.1% BSA. Add 100μl streptavidin-HRP/goat anti-human IgG Fc-HRP (diluted 1:10000 in PBST+0.1%BSA) to each well and incubate for 30/60 minutes, and wash with PBST+0.1%BSA4 Times. Add 50 μl TMB to each well and incubate for 20 minutes. The reaction was stopped by adding 50 μl 2M H 2 SO 4 . The absorbance at 450nm was measured with a microplate reader (Stoltenburg, Krafcikova et al., 2016). The data was analyzed with Origin software (OriginLab, Northampton, MA). Using the nonlinear curve fitting model Hyperbl to draw the binding curve, the Hyperbl model equation is y=P1*x/(P2+x), and P2 is the Kd value.
对于从含有40nt随机区的ssDNA文库鉴定的适体候选物,aptscl 6、9、15、46、56和132对骨硬化蛋白具有高亲和力,具有纳摩尔水平的解离常数(Kd)值(Kd值分别为4.2、3.4、45.6、43.1和42.2nM)(图3)。而aptscl 36、140、136和随机序列(RS)未能拟合。对于从含有25nt随机区的ssDNA文库中鉴定的适体候选物,aptscl 32、29、22、16、3、2和1对骨硬化蛋白的结合亲和力更高,Kd值分别为0.18、0.28、0.76、0.02、0.04、0.006和0.02nM(图 4)。随机序列显示对骨硬化蛋白的低结合能力并无法拟合。相比之下,抗骨硬化蛋白抗体对骨硬化蛋白的Kd值是3.55nM。For the aptamer candidates identified from the ssDNA library containing 40 nt random regions, aptscl 6, 9, 15, 46, 56 and 132 have high affinity for bone sclerostin and have nanomolar dissociation constant (Kd) values (Kd The values were 4.2, 3.4, 45.6, 43.1 and 42.2 nM) (Figure 3). But aptscl 36, 140, 136 and random sequence (RS) failed to fit. For the aptamer candidates identified from the ssDNA library containing 25 nt random regions, aptscl 32, 29, 22, 16, 3, 2, and 1 have higher binding affinity to sclerostin, with Kd values of 0.18, 0.28, and 0.76, respectively , 0.02, 0.04, 0.006 and 0.02nM (Figure 4). The random sequence shows low binding capacity to osteosclerosin and cannot be fitted. In contrast, the Kd value of anti-sclerosin antibody to osteosclerosin is 3.55 nM.
高亲和力的适体特别适合用于检测生物学样品中的骨硬化蛋白,用于体内或体外诊断骨硬化蛋白相关疾病。The high-affinity aptamer is particularly suitable for detecting bone sclerostin in biological samples and for diagnosing bone sclerostin-related diseases in vivo or in vitro.
实施例4、体外评估候选骨硬化蛋白适体对骨硬化蛋白活性的抑制能力Example 4. In vitro evaluation of the inhibitory ability of the candidate osteosclerosin aptamer on the activity of osteosclerosis
在成骨细胞MC3T3-E1细胞中使用TOP-Wnt诱导的萤光素酶报告基因测定法(van Bezooijen,Svensson et al.,2007;Shum,Chan et al.,2011),研究适体候选物抑制骨硬化蛋白对Wnt信号传导的拮抗作用的能力。Using TOP-Wnt-induced luciferase reporter gene assay in osteoblast MC3T3-E1 cells (van Bezooijen, Svensson et al., 2007; Shum, Chan et al., 2011) to study the inhibition of aptamer candidates The ability of bone sclerostin to antagonize Wnt signaling.
将MC3T3-E1细胞接种于24孔板,在第2天使用FuGENE HD转染试剂(Promega),转染相应的报告基因质粒(100ng)、Wnt3a质粒(800ng)和骨硬化蛋白质粒(800ng)。转染10小时后,将培养基更换为新鲜培养基,并用适体/抗体处理细胞。处理24小时后,每个孔的细胞用100μl被动裂解缓冲液裂解,并取20μl用于分析。根据制造商的方案(Promega),通过SpectraMax i3x Multi-Mode Detection Platform(Molecular Device)自动制备萤光素酶测定试剂II和Stop&Glo试剂,并且相应地分析数据(Grentzmann,Ingram et al.,1998;McNabb,Reed et al.,2005)。MC3T3-E1 cells were seeded in a 24-well plate, and on the second day, FuGENE HD transfection reagent (Promega) was used to transfect the corresponding reporter gene plasmid (100ng), Wnt3a plasmid (800ng) and bone sclerosis protein pellet (800ng). After 10 hours of transfection, the medium was replaced with fresh medium and the cells were treated with aptamer/antibody. After 24 hours of treatment, the cells in each well were lysed with 100 μl of passive lysis buffer, and 20 μl was taken for analysis. According to the manufacturer's protocol (Promega), luciferase assay reagent II and Stop&Glo reagent are automatically prepared through SpectraMax i3x Multi-Mode Detection Platform (Molecular Device), and the data is analyzed accordingly (Grentzmann, Ingram et al., 1998; McNabb ,Reed et al., 2005).
结果如图5所示,aptscl 56、aptscl 6、aptscl 3和抗骨硬化蛋白抗体可有效抑制骨硬化蛋白对Wnt信号传导的拮抗作用,并释放Wnt诱导的荧光素酶活性。对于骨硬化蛋白的抑制作用具有剂量依赖性,当aptscl 56、aptscl6的浓度分别达到25μg/ml和47.4μg/ml时,响应稳定。当用抗体处理时,浓度增加到20mg/ml响应仍不稳定。此外,用非线性曲线拟合分析了aptscl56、aptscl 6和aptscl 3的抑制能力。Aptscl 56、aptscl 6和aptscl 3的EC50分别为19.7μg/ml、36.8μg/ml和18.2μg/ml。The results are shown in Figure 5, aptscl 56, aptscl 6, aptscl 3 and anti-oste sclerostin antibodies can effectively inhibit the antagonistic effect of bone sclerostin on Wnt signaling and release Wnt-induced luciferase activity. The inhibitory effect on bone sclerostin is dose-dependent. When the concentrations of aptscl 56 and aptscl6 reach 25 μg/ml and 47.4 μg/ml, the response is stable. When treated with antibodies, the response was still unstable when the concentration was increased to 20 mg/ml. In addition, the inhibition ability of aptscl56, aptscl 6 and aptscl 3 was analyzed by nonlinear curve fitting. The EC50 of Aptscl 56, aptscl 6, and aptscl 3 were 19.7 μg/ml, 36.8 μg/ml and 18.2 μg/ml, respectively.
高亲和力而抑制能力低的适体可能更适合用于体内诊断用途。Aptamers with high affinity but low inhibition may be more suitable for in vivo diagnostic purposes.
表1、骨硬化蛋白适体候选物的序列Table 1. Sequences of osteosclerosin aptamer candidates
Figure PCTCN2019074763-appb-000002
Figure PCTCN2019074763-appb-000002
Figure PCTCN2019074763-appb-000003
Figure PCTCN2019074763-appb-000003
实施例5、aptscl3的截短和表征Example 5 Truncation and characterization of aptscl3
显示对硬化蛋白具有高亲和力和抑制效力的aptscl3被截短(表2)。使用与前述的研究中相同的方案进行结合亲和力和体外抑制效力检测。aptscl3-1、aptscl3-2,aptscl3-3、aptscl3-4和aptscl3-5保持对硬化蛋白的高结合亲和力,Kd值分别为0.86、0.52、0.2和0.22nM。aptscl3-6在该浓度范围内无法拟合结合曲线,表明对硬化蛋白的结合能力低(图6a)。此外,aptscl3-5保留了对硬化蛋白对Wnt信号传导的拮抗作用的高抑制效力(EC50=28.4μg/ml(图6b))。Aptscl3, which showed high affinity for sclerostin and inhibitory potency, was truncated (Table 2). The same protocol as in the previous study was used to test the binding affinity and in vitro inhibition efficacy. aptscl3-1, aptscl3-2, aptscl3-3, aptscl3-4 and aptscl3-5 maintained high binding affinity to sclerostin, with Kd values of 0.86, 0.52, 0.2 and 0.22 nM, respectively. aptscl3-6 could not fit the binding curve in this concentration range, indicating that the binding capacity to sclerostin was low (Figure 6a). In addition, aptscl3-5 retained a high inhibitory effect on the antagonistic effect of sclerostin on Wnt signaling (EC50 = 28.4 μg/ml (Figure 6b)).
表2.适体候选物aptscl3的序列截短Table 2. Sequence truncation of the aptamer candidate aptscl3
Figure PCTCN2019074763-appb-000004
Figure PCTCN2019074763-appb-000004
实施例6、化学修饰的适体候选物的血清稳定性评估Example 6. Evaluation of serum stability of chemically modified aptamer candidates
本发明人已经选择出针对骨硬化蛋白的DNA适体,并最终开发两种截短的适体,称为aptscl56和aptscl3-5,其特异性地与骨硬化蛋白紧密结合,具有低纳摩尔范围内的解离常数。核酸适体的2'-O-甲基(2'-OMe)修饰先前已被用作选择后修饰,因为它们具有增强的核酸酶抗性和升高的双链体解链温度,如临床实验中所示(Fine,Martin et al.2005;Gupta,Hirota et al.2014)。反向dT的3'末端封端也是正在进行或已完成的临床试验中用于疾病治疗的适体的常用策略(Padilla,Sousa et al.1999;Ruckman,Green et al.1998)。因此,本实施例评估aptscl56和aptscl3-5的血清稳定性是否可以通过2'-OMe和3'-末端反向dT(3'-idT)修饰来改善。The inventors have selected a DNA aptamer for sclerostin, and finally developed two truncated aptamers, called aptscl56 and aptscl3-5, which specifically bind to sclerostin closely and have a low nanomolar range The dissociation constant within. 2'-O-methyl (2'-OMe) modifications of aptamers have previously been used as post-selection modifications because of their enhanced nuclease resistance and elevated duplex melting temperature, as in clinical trials Shown in (Fine, Martin et al. 2005; Gupta, Hirota et al. 2014). The 3'end capping of reverse dT is also a common strategy for aptamers used for disease treatment in ongoing or completed clinical trials (Padilla, Sousa et al. 1999; Ruckman, Green et al. 1998). Therefore, this example evaluated whether the serum stability of aptscl56 and aptscl3-5 can be improved by 2'-OMe and 3'-end reverse dT (3'-idT) modification.
实验设计:experimental design:
在合成过程中引入修饰的核苷酸。在新鲜制备的小鼠血清中评估修饰的和未修饰的适体的血清代谢稳定性。将所有适体样品与10%和100%小鼠血清在37℃下分别孵育0、2、4、8、12、24、36、48和72小时。在指定的时间,将适体样品在干冰浴中快速冷冻,然后储存在-80℃直至收获所有样品用于评估。所有适体样品的稳定性表示为孵育后剩余的完整适体的条带密度,其可通过琼脂糖凝胶电泳确定。The modified nucleotides are introduced during the synthesis process. The serum metabolic stability of modified and unmodified aptamers was evaluated in freshly prepared mouse serum. All aptamer samples were incubated with 10% and 100% mouse serum at 37°C for 0, 2, 4, 8, 12, 24, 36, 48, and 72 hours, respectively. At the specified time, the aptamer samples were quickly frozen in a dry ice bath and then stored at -80°C until all samples were harvested for evaluation. The stability of all aptamer samples is expressed as the band density of intact aptamers remaining after incubation, which can be determined by agarose gel electrophoresis.
DNA合成方案:DNA synthesis scheme:
使用市售的5'-O-DMT-2'-脱氧核苷(ABz、CAc、GiBu和T)亚磷酰胺单体、5'-O-DMT-2'-O-甲基核苷(ABz、CAc、GiBu和T)亚磷酰胺单体和/或5'-O-DMT-2'-F-核苷(ABz、CAc、GiBu和T)亚磷酰胺单体在K&A H8标准DNA/RNA合成仪上以1μmole规模合成修饰的和未修饰的DNA序列(Beaucage和Caruthers 2001)。修饰的aptscl56序列为 CGGGG TGTGG GTTCG TCGTT AGCTT GATTT GGCAG CT GCCC-idT,下划线核苷酸为2'-OMe修饰。aptscl3-5的修饰序列是 GCTAG CTGTT GTACA TCGCC TTACG CA CGT G-idT,下划线核苷酸是2'-OMe修饰的。 Use commercially available 5'-O-DMT-2'-deoxynucleoside (ABz, CAc, GiBu and T) phosphoramidite monomer, 5'-O-DMT-2'-O-methyl nucleoside (ABz , CAc, GiBu and T) phosphoramidite monomer and/or 5'-O-DMT-2'-F-nucleoside (ABz, CAc, GiBu and T) phosphoramidite monomer in K&A H8 standard DNA/RNA Modified and unmodified DNA sequences were synthesized on a synthesizer on a 1 μmole scale (Beaucage and Caruthers 2001). The modified aptscl56 sequence is CGGG G TGTGG GTTCG TCGTT AGCTT GATTT GGCAG CT GCCC -idT, and the underlined nucleotide is a 2'-OMe modification. The modified sequence of aptscl3-5 is GCTA G CTGTT GTACA TCGCC TTACG CA CGT G -idT, and the underlined nucleotide is 2'-OMe modification.
评估方案:Evaluation plan:
通过分子成像仪(Bio-Rad)测定所有适体样品的条带密度(Klussmann,Nolte et al.1996,Siller-Matula,Merhi et al.2012)。使用与前述研究中相同的方案进行结合亲和力和体外抑制效力测定。The band density of all aptamer samples was determined by a molecular imager (Bio-Rad) (Klussmann, Nolte et al. 1996, Siller-Matula, Merhi et al. 2012). The binding affinity and in vitro inhibition potency determinations were performed using the same protocol as in the previous study.
结果:result:
对于aptscl56,未修饰的适体在10%血清中48小时后完全降解,并且在100%血清中仅保持8小时。2'-OMe和3'-idT修饰的aptscl56在10%小鼠血清中保持72小时,并在100%小鼠血清中12小时后才降解。在72小时,仍然保留少量修饰的适体(图7)。For aptscl56, the unmodified aptamer was completely degraded after 48 hours in 10% serum, and remained in 100% serum for only 8 hours. 2'-OMe and 3'-idT modified aptscl56 were kept in 10% mouse serum for 72 hours, and degraded after 12 hours in 100% mouse serum. At 72 hours, a small amount of modified aptamers still remained (Figure 7).
对于aptscl3-5,未修饰的适体在10%小鼠血清中孵育后24小时降解。2'-OMe和3'-idT修饰的aptscl3-5可在10%小鼠血清中保持48小时。在100%血清中,未修饰的aptscl3-5在8小时后迅速和完全降解,而修饰的aptscl3-5在72小时后可保持完整性(图8)。For aptscl3-5, the unmodified aptamer was degraded 24 hours after incubation in 10% mouse serum. 2'-OMe and 3'-idT modified aptscl3-5 can be maintained in 10% mouse serum for 48 hours. In 100% serum, unmodified aptscl3-5 was rapidly and completely degraded after 8 hours, while modified aptscl3-5 maintained integrity after 72 hours (Figure 8).
化学修饰的aptscl56和aptscl3-5显示出对骨硬化蛋白的高结合亲和力,Kd值分别为6.55和0.54nM。此外,化学修饰的aptscl56和aptscl3-5可有效解除骨硬化蛋白对细胞中Wnt信号的抑制作用,其效力分别为14和11μg/ml(图9)。The chemically modified aptscl56 and aptscl3-5 showed high binding affinity to bone sclerostin, with Kd values of 6.55 and 0.54 nM, respectively. In addition, chemically modified aptscl56 and aptscl3-5 can effectively relieve the inhibitory effect of bone sclerostin on Wnt signaling in cells, and their efficacies were 14 and 11 μg/ml, respectively (Figure 9).
结论:in conclusion:
用2'-OMe和3'-idT修饰可以进一步促进将aptscl56和aptscl3-5开发成 治疗性核酸酶抗性适体。Modification with 2'-OMe and 3'-idT can further promote the development of aptscl56 and aptscl3-5 into therapeutic nuclease-resistant aptamers.
实施例7、PEG修饰的适体Example 7. PEG modified aptamer
本发明确定在大鼠皮下给药后,针对骨硬化蛋白的进行PEG修饰和不进行PEG修饰的适体(PEG40K-aptscl56和aptscl56)的血浆药代动力学。其中aptscl56序列为CGGGG TGTGG GTTCG TCGTT AGCTT GATTT GGCAG CTGCCC-idT,起始CGGG和末端GCCC各核苷酸用2'-OMe修饰。PEG40K-aptscl56在此基础上进一步在5'-末端连接PEG40K(分子量40000的PEG)。The present invention determines the plasma pharmacokinetics of PEG-modified and non-PEG-modified aptamers (PEG40K-aptscl56 and aptscl56) for bone sclerostin after subcutaneous administration in rats. The aptscl56 sequence is CGGGG TTGTG GTTCG TCGTT AGCTT GATTT GGCAG CTGCCC-idT, and each nucleotide of the start CGGG and the end GCCC is modified with 2'-OMe. On this basis, PEG40K-aptscl56 is further connected to PEG40K (PEG with a molecular weight of 40,000) at the 5'-end.
实验设计:experimental design:
适体aptscl56和PEG40K-aptscl56的药代动力学研究在6个月大的雌性原始Sprague-Dawley大鼠中进行,该大鼠随意喂食标准实验室饮食并在受控条件下饲养(12小时光周期,20℃)。通过单次皮下注射分别用6.1mg/kg aptscl56和25mg/kg PEG40K-aptscl56处理大鼠。将aptscl56和PEG40K-aptscl56分别以1.6mg/ml和6.2mg/ml的浓度溶解在盐水中(Judith M.Healy,Ryan M.Boomer等人,2004)。在不同时间点(aptscl56:5min、15min、30min、1h、2h、4h、8h、12h、24h;PEG40K-aptscl56:30min、1h、2h、4h、8h、12h、24h、30h、36h、48h、54h、62h、70h、76h、84h、96h、107h)分别从各组的重复大鼠(n=6)收集血样,分离血浆。在用蛋白酶K处理后,通过HPLC定量血浆中剩余的aptscl56和PEG40K-aptscl56。The pharmacokinetic study of the aptamers aptscl56 and PEG40K-aptscl56 was performed in 6-month-old female primitive Sprague-Dawley rats, which were fed a standard laboratory diet ad libitum and reared under controlled conditions (12-hour photoperiod , 20°C). Rats were treated with 6.1 mg/kg aptscl56 and 25 mg/kg PEG40K-aptscl56 through a single subcutaneous injection. Aptscl56 and PEG40K-aptscl56 were dissolved in saline at concentrations of 1.6 mg/ml and 6.2 mg/ml, respectively (Judith M. Healy, Ryan M. Boomer et al., 2004). At different time points (aptscl56: 5min, 15min, 30min, 1h, 2h, 4h, 8h, 12h, 24h; PEG40K-aptscl56: 30min, 1h, 2h, 4h, 8h, 12h, 24h, 30h, 36h, 48h, 54h , 62h, 70h, 76h, 84h, 96h, 107h) blood samples were collected from repeated rats (n=6) in each group, and plasma was separated. After treatment with proteinase K, the remaining aptscl56 and PEG40K-aptscl56 in the plasma were quantified by HPLC.
评估方案:Evaluation plan:
样品制备:从每只大鼠通过眼眶静脉采集大约800μl血液,并收集到含有钠-肝素作为抗凝血剂的管中(1.8ml真空容器,BD Biosciences),然后立即置于湿冰上(Healy,Lewis et al.2004,Perschbacher,Smestad et al.2015)。通过在收集后1小时内在4℃下以6000g离心10分钟来分离血浆,并在-80℃下储存直至分析(Healy,Lewis et al.2004,Siller-Matula,Merhi et al.2012,Gao,Shen et al.2016)。在分析之前,25μl消化缓冲液(60mM Tris-HCl,pH8.0,100mM EDTA和0.5%SDS)和75μl蛋白酶溶液(在10mM Tris HCl中1mg/mL蛋白酶K,pH 7.5,20mM CaCl 2,10%甘油v/v)加入50μl血浆样 品中。然后将样品在55℃下振荡培养过夜。温育后,将样品离心(14000rpm;4℃;15分钟)并取出100μl上清液并转移至HPLC注射小瓶(Siller-Matula,Merhi等人,2012)。 Sample preparation: Collect approximately 800μl of blood from each rat through the orbital vein, and collect it into a tube containing sodium-heparin as an anticoagulant (1.8ml vacuum container, BD Biosciences), and then immediately place it on wet ice (Healy , Lewis et al. 2004, Perschbacher, Smestad et al. 2015). The plasma was separated by centrifugation at 6000g for 10 minutes at 4°C within 1 hour after collection, and stored at -80°C until analysis (Healy, Lewis et al. 2004, Siller-Matula, Merhi et al. 2012, Gao, Shen et al.2016). Before analysis, 25μl digestion buffer (60mM Tris-HCl, pH8.0, 100mM EDTA and 0.5% SDS) and 75μl protease solution (1mg/mL proteinase K in 10mM Tris HCl, pH 7.5, 20mM CaCl 2 , 10% glycerol) v/v) Add 50μl plasma sample. The samples were then incubated overnight at 55°C with shaking. After incubation, the samples were centrifuged (14000 rpm; 4°C; 15 minutes) and 100 μl of supernatant was removed and transferred to an HPLC injection vial (Siller-Matula, Merhi et al., 2012).
HPLC定量:HPLC系统配备有C4柱以定量在不同时间点收集的血浆样品中的PEG40K-aptscl56,而C18柱用于定量aptscl56。该方法均使用由A相(TEAA[pH 7.0])和B相(乙腈)制成的流动相洗脱梯度。当柱温箱温度设定在50℃时,流速均为1.0mL/min。测定注射体积为20uL。在含有不同浓度的aptscl56和PEG40K-aptscl56的钠-肝素的空白大鼠血浆中制备标准品(Gao,Shen等人,2016)。所有报告的aptscl56和PEG40K-aptscl56的浓度均基于aptscl56的质量。根据标准曲线计算血浆样品中的适体浓度。 HPLC quantification: The HPLC system is equipped with a C4 column to quantify PEG40K-aptscl56 in plasma samples collected at different time points, and a C18 column is used to quantify aptscl56. This method uses a mobile phase elution gradient made of phase A (TEAA[pH 7.0]) and phase B (acetonitrile). When the temperature of the column oven is set at 50°C, the flow rate is 1.0 mL/min. The measured injection volume is 20uL. Standards were prepared in blank rat plasma containing different concentrations of aptscl56 and PEG40K-aptscl56 sodium-heparin (Gao, Shen et al., 2016). All reported concentrations of aptscl56 and PEG40K-aptscl56 are based on the quality of aptscl56. Calculate the aptamer concentration in the plasma sample according to the standard curve.
药代动力学分析:绘制Aptscl56和PEG40K-aptscl56浓度对时间曲线,并通过软件DAS 3.0(BioGuider Co.,Shanghai,China)分析每只大鼠。将得到的药代动力学参数取平均值。根据适体消除一半最大血浆浓度所需的时间计算适体的半衰期(t1/2)(Grieken和Bruin 1994)。根据药代动力学曲线获得最大血浆浓度(C max)和最大血浆浓度时间(T max)。从药物施用开始计算曲线下面积(AUC),并且当血浆中的浓度可忽略不计时结束(Rowland,Benet et al.1973,Toutain and Bousquet-Melou 2004,Siller-Matula,Merhi et al.2012)。随后,根据下式计算多剂量PEG40K-aptscl56的给药间隔:D=1/1-e -Ke·t(Ke:消除常数,Ke=ln2/T1/2;t:给药间隔;D:给药比=负荷剂量/维持剂量)(Birkett 1996,Jambhekar 2012)。 Pharmacokinetic analysis: Draw Aptscl56 and PEG40K-aptscl56 concentration versus time curves, and analyze each rat by software DAS 3.0 (BioGuider Co., Shanghai, China). Average the obtained pharmacokinetic parameters. The half-life (t1/2) of the aptamer was calculated based on the time required for the aptamer to eliminate half of the maximum plasma concentration (Grieken and Bruin 1994). According to the pharmacokinetic curve, the maximum plasma concentration (C max) and the maximum plasma concentration time (T max) were obtained. The area under the curve (AUC) is calculated from the start of drug administration, and ends when the concentration in plasma is negligible (Rowland, Benet et al. 1973, Toutain and Bousquet-Melou 2004, Siller-Matula, Merhi et al. 2012). Subsequently, the dosing interval of multiple doses of PEG40K-aptscl56 was calculated according to the following formula: D=1/1-e- Ke·t (Ke: elimination constant, Ke=ln2/T1/2; t: dosing interval; D: giving Drug ratio = loading dose/maintenance dose) (Birkett 1996, Jambhekar 2012).
结果:result:
aptscl56的HPLC定量下限为10ul/mL,线性浓度范围为10μg/mL至360ug/mL。皮下给药后Sprague-Dawley大鼠中aptscl56适体的消除半衰期(Elim.T1/2)的平均值为1.8小时。C max的平均值为265.5μg/ml,T max为0.5小时(图10,表3)。The lower limit of HPLC quantification of aptscl56 is 10ul/mL, and the linear concentration range is from 10μg/mL to 360ug/mL. The average elimination half-life (Elim.T1/2) of aptscl56 aptamer in Sprague-Dawley rats after subcutaneous administration was 1.8 hours. The average value of C max is 265.5 μg/ml, and T max is 0.5 hours (Figure 10, Table 3).
PEG40K-aptscl56的HPLC定量的下限为7.5μg/mL,线性浓度范围为7.5μg/mL至240μg/mL。皮下给药后Sprague-Dawley大鼠中PEG40K-aptscl56的消除半衰期(Elim.T1/2)的平均值为66.9小时。C max的平均值为152.8μg/ml,T max为72小时(图11,表4)。The lower limit of HPLC quantification of PEG40K-aptscl56 is 7.5μg/mL, and the linear concentration range is 7.5μg/mL to 240μg/mL. The average elimination half-life (Elim.T1/2) of PEG40K-aptscl56 in Sprague-Dawley rats after subcutaneous administration was 66.9 hours. The average value of C max is 152.8 μg/ml, and T max is 72 hours (Figure 11, Table 4).
表3.皮下施用的aptscl56的药代动力学参数Table 3. Pharmacokinetic parameters of aptscl56 administered subcutaneously
Figure PCTCN2019074763-appb-000005
Figure PCTCN2019074763-appb-000005
表4.皮下施用的PEG40K-aptscl56的药代动力学参数Table 4. Pharmacokinetic parameters of PEG40K-aptscl56 administered subcutaneously
Figure PCTCN2019074763-appb-000006
Figure PCTCN2019074763-appb-000006
讨论:discuss:
本实施例研究了在S.D.大鼠皮下施用的PEG40K-aptscl56和aptscl56的药代动力学特征。与aptscl56的1.8小时消除半衰期相比,PEG40K-aptscl56的半衰期显著延长了65.1小时。这表明PEG对延长aptscl56的体内停留时间具有显著作用。然而,血浆中PEG40K-aptscl56的浓度整体低于aptscl56的浓度(图12)。许多研究表明PEG化的大小增加导致血液吸收的系统性降低(Caliceti 2003,Kaminskas,Kota et al.2009)。聚乙二醇化可能阻碍aptscl56的血液吸收。This example studied the pharmacokinetic characteristics of PEG40K-aptscl56 and aptscl56 administered subcutaneously in S.D. rats. Compared with the 1.8-hour elimination half-life of aptscl56, the half-life of PEG40K-aptscl56 was significantly extended by 65.1 hours. This indicates that PEG has a significant effect on prolonging the residence time of aptscl56 in vivo. However, the concentration of PEG40K-aptscl56 in plasma was lower than that of aptscl56 as a whole (Figure 12). Many studies have shown that the increased size of PEGylation leads to a systemic decrease in blood absorption (Caliceti 2003, Kaminskas, Kota et al. 2009). Pegylation may hinder the blood absorption of aptscl56.
在PEG40K-aptscl56的药代动力学研究中,吸收需要60小时,但消除需要35小时。然而,消除大多数适体-PEG所需的时间总是比吸收长得多(Christopher E.Tucker 1999,Siller-Matula,Merhi et al.2012)。一些研究表明PEG化的大小增强通过被动增强的渗透和保留机制促进了渗透组织的积累(Caliceti 2003)。将PEG40K-aptscl56累积到可渗透组织中可能是药代动力学曲线消除阶段快速下降的原因之一。进一步研究PEG40K-aptscl56的这种药代动力学现象将作出清楚的解释。In the pharmacokinetic study of PEG40K-aptscl56, absorption takes 60 hours, but elimination takes 35 hours. However, the time required to eliminate most aptamer-PEG is always much longer than absorption (Christopher E. Tucker 1999, Siller-Matula, Merhi et al. 2012). Some studies have shown that the increased size of PEGylation promotes the accumulation of infiltrated tissue through passively enhanced penetration and retention mechanisms (Caliceti 2003). The accumulation of PEG40K-aptscl56 in the permeable tissue may be one of the reasons for the rapid decline in the elimination phase of the pharmacokinetic curve. Further research on this pharmacokinetic phenomenon of PEG40K-aptscl56 will give a clear explanation.
多剂适体的给药间隔可以基于其消除半衰期和负荷剂量与维持剂量的剂量比来定义(Birkett 1996,Jambhekar 2012)。PEG40K-aptscl56的消除半衰期为66.9小时。如果剂量比为2,则给药间隔等于消除半衰期(T1/2)。如果剂量比小于2,则给药间隔应长于T1/2。在PEG40K-aptscl56的药效学研究中,建议的剂量比为1(加载剂量等于维持剂量)。因此,PEG40K-aptscl56 给药间隔应长于66.9h。The dosing interval of a multi-dose aptamer can be defined based on its elimination half-life and the dose ratio of the loading dose to the maintenance dose (Birkett 1996, Jambhekar 2012). The elimination half-life of PEG40K-aptscl56 is 66.9 hours. If the dose ratio is 2, the dosing interval is equal to the elimination half-life (T1/2). If the dose ratio is less than 2, the dosing interval should be longer than T1/2. In the pharmacodynamic study of PEG40K-aptscl56, the recommended dose ratio is 1 (the loading dose is equal to the maintenance dose). Therefore, the administration interval of PEG40K-aptscl56 should be longer than 66.9h.
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Claims (10)

  1. 一种检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的方法,包括:A method for detecting the presence and/or the expression level of bone sclerostin in a biological sample includes:
    a)在针对骨硬化蛋白的适体与骨硬化蛋白之间能够形成复合物的条件下,使所述生物学样品和对照样品分别与针对骨硬化蛋白的适体接触;a) Under the condition that a complex can be formed between the aptamer and the sclerostin, the biological sample and the control sample are respectively contacted with the aptamer for the sclerostin;
    b)检测复合物的形成,b) detect the formation of complexes,
    其中所述生物学样品与对照样品之间复合物形成的差异指示样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平,Wherein the difference in the formation of the complex between the biological sample and the control sample indicates the presence of bone sclerostin and/or the expression level of bone sclerostin in the sample,
    其中所述适体Aptamer
    i)包含与SEQ ID NO:1-17中的任一具有至少大约90%相同性、至少大约91%相同性、至少大约92%相同性、至少大约93%相同性、至少大约94%相同性或至少大约95%相同性的核苷酸序列,或者,i) Contains at least about 90% identity, at least about 91% identity, at least about 92% identity, at least about 93% identity, at least about 94% identity with any of SEQ ID NO: 1-17 Or a nucleotide sequence that is at least about 95% identical, or,
    ii)包含SEQ ID NO:1-17中的任一中的至少30个、至少35个、至少40个、至少45个、至少50个或更多个连续的核苷酸,ii) comprising at least 30, at least 35, at least 40, at least 45, at least 50 or more consecutive nucleotides in any one of SEQ ID NO: 1-17,
    优选地,所述适体包含SEQ ID NO:1-17或19-24中任一的序列,Preferably, the aptamer comprises the sequence of any one of SEQ ID NO: 1-17 or 19-24,
    其中所述适体特异性结合骨硬化蛋白。The aptamer specifically binds to bone sclerostin.
  2. 权利要求1的方法,所述适体对骨硬化蛋白具有小于100nM,优选小于50nM,优选小于40nM,优选小于30nM,优选小于20nM,优选小于10nM或更小的K dThe method of claim 1, wherein the aptamer has a K d of less than 100 nM for osteosclerosis, preferably less than 50 nM, preferably less than 40 nM, preferably less than 30 nM, preferably less than 20 nM, preferably less than 10 nM or less.
  3. 权利要求1或2的方法,所述针对骨硬化蛋白的适体缀合有可用于检测的荧光染料、化学物质、多肽、酶、同位素或标签。The method of claim 1 or 2, wherein the aptamer for sclerostin is conjugated with a fluorescent dye, chemical substance, polypeptide, enzyme, isotope or label that can be used for detection.
  4. 如权利要求1-3中任一项中所定义的针对骨硬化蛋白的适体在制备用于检测生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平的试剂盒中的用途。Use of an aptamer for osteosclerosin as defined in any one of claims 1 to 3 in the preparation of a kit for detecting the presence and/or the expression level of osteosclerosin in a biological sample .
  5. 一种在对象中诊断骨硬化蛋白相关疾病的方法,所述方法包括使用权利要求1-3中任一项中所定义的针对骨硬化蛋白的适体检测来自疑似患有骨硬化蛋白相关疾病的对象的生物学样品中骨硬化蛋白的存在和/或骨硬化蛋白的表达水平,其中所述骨硬化蛋白的存在和/或骨硬化蛋白的表达水平代表骨硬化蛋白相关疾病的存在和/或状态。A method for diagnosing a disease related to bone sclerostin in a subject, the method comprising using the aptamer for sclerostin as defined in any one of claims 1 to 3 to detect a person suspected of having a disease related to sclerostin The presence of bone sclerostin and/or the expression level of bone sclerostin in the biological sample of the subject, wherein the presence of bone sclerostin and/or the expression level of bone sclerostin represents the existence and/or state of bone sclerostin-related diseases .
  6. 一种在对象中诊断骨硬化蛋白相关疾病的方法,所述方法将如权利 要求1-3中任一项中所定义的针对骨硬化蛋白的适体施用至疑似患有骨硬化蛋白相关疾病的对象,然后检测所述对象体内所述适体的积聚,从而诊断骨硬化蛋白相关疾病。A method for diagnosing a disease related to bone sclerostin in a subject by administering an aptamer for sclerostin as defined in any one of claims 1 to 3 to a person suspected of having a disease related to sclerostin The subject is then detected for the accumulation of the aptamer in the subject, thereby diagnosing osteosclerosin-related diseases.
  7. 权利要求6的方法,其中检测所述对象体内所述适体的积聚通过对所述对象成像来实现,所述适体例如用同位素标记。The method of claim 6, wherein detecting the accumulation of the aptamer in the subject is achieved by imaging the subject, the aptamer being labeled with an isotope, for example.
  8. 如权利要求1-3中任一项中所定义的针对骨硬化蛋白的适体在制备用于在对象中诊断骨硬化蛋白相关疾病的试剂盒中的用途。Use of an aptamer against osteosclerosin as defined in any one of claims 1 to 3 in the preparation of a kit for diagnosing osteosclerosin-related diseases in a subject.
  9. 权利要求5-7任一项的方法或权利要求8的用途,其中所述骨硬化蛋白相关疾病例如是对象中骨硬化蛋白表达水平异常的疾病。The method of any one of claims 5-7 or the use of claim 8, wherein the osteosclerosin-related disease is, for example, a disease in which the expression level of osteosclerosin is abnormal in a subject.
  10. 一种用于权利要求1-3中任一项的检测方法和/或权利要求5-7中任一项的诊断方法的试剂盒,所述试剂盒包含如权利要求1-3中任一项所定义的针对骨硬化蛋白的适体,用于检测所述针对骨硬化蛋白的适体的存在和/或量的试剂,以及使用说明。A kit for the detection method of any one of claims 1-3 and/or the diagnostic method of any one of claims 5-7, the kit comprising any one of claims 1-3 The defined aptamer for osteosclerosin, a reagent for detecting the presence and/or amount of the aptamer for osteosclerosin, and instructions for use.
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