WO2020049118A1 - Animal luring device - Google Patents
Animal luring device Download PDFInfo
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- WO2020049118A1 WO2020049118A1 PCT/EP2019/073748 EP2019073748W WO2020049118A1 WO 2020049118 A1 WO2020049118 A1 WO 2020049118A1 EP 2019073748 W EP2019073748 W EP 2019073748W WO 2020049118 A1 WO2020049118 A1 WO 2020049118A1
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- WIPO (PCT)
- Prior art keywords
- microorganisms
- genetically engineered
- animal
- compartment
- luring device
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Classifications
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N25/00—Biocides, pest repellants or attractants, or plant growth regulators, characterised by their forms, or by their non-active ingredients or by their methods of application, e.g. seed treatment or sequential application; Substances for reducing the noxious effect of the active ingredients to organisms other than pests
- A01N25/34—Shaped forms, e.g. sheets, not provided for in any other sub-group of this main group
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M1/00—Stationary means for catching or killing insects
- A01M1/02—Stationary means for catching or killing insects with devices or substances, e.g. food, pheronones attracting the insects
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M1/00—Stationary means for catching or killing insects
- A01M1/02—Stationary means for catching or killing insects with devices or substances, e.g. food, pheronones attracting the insects
- A01M1/023—Attracting insects by the simulation of a living being, i.e. emission of carbon dioxide, heat, sound waves or vibrations
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M1/00—Stationary means for catching or killing insects
- A01M1/02—Stationary means for catching or killing insects with devices or substances, e.g. food, pheronones attracting the insects
- A01M1/04—Attracting insects by using illumination or colours
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M1/00—Stationary means for catching or killing insects
- A01M1/20—Poisoning, narcotising, or burning insects
- A01M1/2022—Poisoning or narcotising insects by vaporising an insecticide
- A01M1/2027—Poisoning or narcotising insects by vaporising an insecticide without heating
- A01M1/2055—Holders or dispensers for solid, gelified or impregnated insecticide, e.g. volatile blocks or impregnated pads
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M25/00—Devices for dispensing poison for animals
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01M—CATCHING, TRAPPING OR SCARING OF ANIMALS; APPARATUS FOR THE DESTRUCTION OF NOXIOUS ANIMALS OR NOXIOUS PLANTS
- A01M31/00—Hunting appliances
- A01M31/008—Lure dispensing devices
Definitions
- an animal luring device comprising a) a first compartment containing genetically engineered first microorganisms, the genetically engineered first microorganisms being genetically engineered in that they produce and release i) an attractant attracting an animal and ii) an active agent,
- the invention makes use of genetically engineered microorganisms producing and releasing an attractant and an active agent, thus providing the attractant and the active agent in a sustained manner.
- the device also contains a nutrient source for the microorganisms, preferably a sustained-release nutrient source providing nutrients for the microorganisms in a sustained manner.
- animal luring device refers to a device being designed to attract and trap, capture, kill or otherwise treat animals, in particular vermin and pests like mosquitoes.
- animal trap may also be used here synonymously, without intending to delimit the function of the device to only capturing or killing animals.
- the term refers to a nutrient source providing nutrients keeping the genetically engineered microorganisms present in the animal luring device of the invention alive for a period of at least 5 days, preferably at least one week, or at least two, three, four, five, six seven or eight weeks.
- a sustained- release nutrient source may, for example, be or comprise a polymer that can be biologically degraded by the microorganisms, e.g. via enzymes excreted by the microorganisms.
- the term also encompasses a separate culture of microorganisms providing a nutrient for the genetically engineered microorganisms.
- a nutrient source preferably provides the genetically engineered microorganisms with at least a suitable carbon and/or energy source, and preferably
- nutrient source encompasses a composition or combination of separate nutrient sources separately providing different nutrients, e.g. a carbon source, a nitrogen source, a phosphorus source etc.
- a third compartment containing second microorganisms providing a nutrient source for the genetically engineered first microorganisms wherein the third compartment is connected to the first compartment in a manner that the nutrient source is able to pass to the first compartment, whereas the second microorganisms are not, and wherein the first microorganisms are not able to pass to the third compartment.
- microorganisms for example genetically engineered chemoheterotrophic bacteria like E. coli
- second microorganisms which may also be genetically engineered or not.
- the second microorganisms are preferably microorganisms, which do not need an organic carbon and energy source, and are thus preferably photoautotrophic.
- the third compartment of the animal luring device is therefore preferably permeable to light as energy source and carbon dioxide as carbon source for the photoautotrophic microorganisms.
- the second microorganisms are Cyanobacteria.
- the compartments with the first and second microorganisms are connected with each other, however, in a manner that neither the first nor the second microorganisms are able to leave their own compartment and to move to the other compartment.
- the nutrient source provided by the second microorganisms preferably includes all macro- and micronutrients required by the genetically engineered first
- the second microorganisms may provide all nutrients necessary for a long-term survival of the first microorganisms, such that this embodiment of the animal luring device of the invention is at least essentially self-sustaining.
- the second microorganisms may, for example, provide the first microorganisms, e.g. E. coli, with a nutrient source by simply growing and dying. In this case, the second microorganisms need not to be genetically engineered.
- Cell lysate e.g.
- Cyanobacterium lysate is a suitable nutrient source for E. coli, for example.
- the second microorganisms for example Cyanobacteria, may, however, also be genetically engineered in that they produce and release a nutrient source, e.g. Glucose, for the genetically engineered first microorganisms. It is especially preferred to use nitrogen-fixing Cyanobacteria in order to also provide a nitrogen source for the first microorganisms.
- the animal luring device may comprise a polymer that is enzymatically degradable by the genetically engineered first microorganisms as a nutrient source for the first microorganisms.
- the polymer may, for example, be a slowly degrading carbohydrate polymer, e.g. a glucose-xylose hybrid polymer.
- Cellulase enzymes secreted by E. coli, for example, would degrade the polymer, releasing glucose and xylose.
- Xylose inhibits cellulase activity and thus ensures long-term functionality.
- the polymer may, for example, be arranged in the first compartment together with the first microorganisms.
- the polmyer in a separate compartment connected to the first compartment, such that enzymes excreted by the first microorganisms are able to enter the compartment and the nutrients released are able to pass to the first compartment with the first microorganisms, while the first microorganisms are not able to pass to the compartment with the polymer.
- the polymer preferably provides at least a source of carbon and energy to the first microorganisms.
- the term“polymer” also encompasses a composition or combination of different polymers serving the purpose of delivering a nutrient or nutrients to the first microorganisms.
- the genetically engineered first microorganisms are growth inhibited.
- the genetically engineered first microorganisms are further genetically engineered in that they are growth-inhibited.
- the microorganisms e.g. E. coli
- the microorganisms may be engineered such that they overexpress genes which regulate reproduction.
- this could include, for example, overexpression of cspD for DNA synthesis inhibition, mraZ for cell wall synthesis inhibition, cbtA for cell elongation inhibition and/or sulA for cell division inhibition.
- the growth inhibition preferably only limits cell division and does not kill surplus bacteria to prevent a possible negative impact of lysed bacteria on the culture.
- E. coli is used as a first microorganism, since E. coli, once grown to density, may accumulate toxic substances which endanger the media microenvironment. It is within the ordinary skill to choose and implement a usefull strategy to achive growth-inhibition, e.g. to choose and implement a suitable biotechnological engineering approach. It is to be noted here again that it is not necessary, and not preferred, to engineer all first microorganisms in the same way, such that any of the cells have the same mutation(s) and/or are transformed with the same construct(s). Rather, it is preferred that a first fraction of the cells is engineered such that the cells produce an attractant and a second fraction of the cells is engineered such that the cells produce the active agent. In case that more than one attractant and/or active agent is used, there may be different cells being engineered accordingly. It is, however, preferred that all cells are engineered such that they are growth inhibited.
- the attractant is chosen dependent on the animals to be attracted.
- the attractant may be a pheromone.
- the attractant can be heat, lactate, 3 -methyl- 1 -butanol or myristic acid, or a combination thereof.
- the first microorganisms e.g. E. coli, may be engineered to express alternative oxidase la from Nelumbo nucifera (see Graves, C. & Holmes, S. PartBBa K410000, 2010.
- Lactate for example, may be produced in E. coli by overexpression of lactate dehydrogenase (ldhA).
- the active agent may be a compound or composition that is toxic to the targeted animal. This is preferred in embodiments, where it is desired to kill the animal, e.g. an insect pest being at least potentially harmful to human beings, pets or crops, for example Malaria transmitting Anopheles mosquitoes.
- the genetically engineered first microorganisms e.g. E. coli, or a fraction thereof, are genetically engineered in that they express and secrete BjalT.
- a construct may, for example, be introduced into the first microorganisms, or a fraction thereof, comprising the BjalT coding sequence, preferably a codon-optimized BjalT coding sequence, and sequences coding for a linker containing an outer membrane protease (OmpT) site, a FLAG tag and an hlyA signal peptide for secretion.
- OmpT outer membrane protease
- the active agent can be a compound or composition being toxic for a pathogen infesting the animal, or a compound or composition immunizing or vaccinating the animal against a pathogen infesting the animal.
- the animal can, for example, be freed from an endopathogen being harmful to a human being when transmitted from the animal to the human being.
- the active agent can be a compound being toxic for a Plasmodium species infesting Anopheles mosquitoes.
- the animal to be lured by the animal luring device of the invention can be any animal, which can be attracted by an attractant.
- the targeted animal is a pest or vermin, e.g. a rodent, an arthropod, e.g. arachnid or insect, e.g. stinging insect, or other harmful, annoying or detrimental animal.
- the targeted animal is an insect, for example an insect of the suborder Nematocera, e.g. a mosquito, or an arachnid, e.g. a mite.
- the animal luring device of the invention is particularly useful for, but not limited to, luring mosquitoes, for example mosquitoes of the genus Anopheles transmitting Malaria, e.g. Anopheles gambiae, or mosquitoes of the genera Aedes, Culex, Culiseta, Haemagogus, or Ochlerotatus.
- the genetically engineered first microorganisms are genetically engineered E. coli cells.
- the genetically engineered first microorganisms are genetically engineered E. coli cells and the second microorganisms are genetically engineered Cyanobacteria genetically engineered in that they produce and release the nutrient source for the genetically engineered E. coli cells.
- FIG. 1 Simplified schematic longitudinal section (A) of an embodiment of the animal luring device of the invention and top view (B) of a part of the animal luring device of Fig. 1A.
- FIG. 1 Perspective view of the embodiment of the animal luring device of the invention of Fig. 1. Part of the device is shown in section.
- Figure 1 shows a simplified schematic longitudinal section (A) of an embodiment of the animal luring device 1 of the invention and a top view (B) of a part of the animal luring device of Fig.
- Figure 2 shows a perspective view of the embodiment of the animal luring device of the invention schematically depicted in Figure 1.
- the animal luring device 1 which is especially adapted and suitable for luring mosquitoes, comprises a cylindrical first compartment 2 containing the genetically engineered first microorganisms, here genetically engineered E. coli cells.
- the E. coli cells are genetically engineered in that they produce and release an attractant attracting mosquitoes and an active agent, here an insecticide killing the mosquitoes.
- a filter 5, permeable for the attractant and the active agent, but not permeable to the first microorganisms, is arranged above the first compartment 2, separating the first compartment 2 from an area or compartment 3, which is freely accessible for mosquitoes.
- the filter 5 for example a nitrocellulose nano filter, is arranged on a filter support 6 formed by annular projections inwardly projecting into the first compartment 2 from the cylindrical wall 10 of the first compartment 2.
- the filter 5 is secured from above by a clamping ring 7, a top view of which is shown in Fig. 1B.
- the genetically engineered first microorganisms are thus confined to the first compartment 2.
- microorganisms are not able to pass the filter 5 and cannot escape from the first compartment 2.
- the animal luring device 1 of the invention comprises a third compartment 4 containing second microorganisms, in this case genetically engineered Cyanobacteria.
- the Cyanobacteria are genetically engineered in that they produce glucose in order to feed the E. coli cells in the first compartment.
- the third compartment 4 is essentially funnel-shaped and has a lower cylindrical section 11 and an upper conically widening section 12.
- a cover 9 covers the third compartment 4. At least part of the compartment 4, e.g. the cover 9, is permeable to light and carbon dioxide. To this end, the compartment 4 or at least part of it may consist of a transparent plastic material.
- the compartment 4 can, for example, be reversibly attached to the clamping ring 7 via a screw connection 8.
- a hydrogel (not depicted here) may be arranged upon the filter 5.
- the hydrogel may act as a reservoir for the insecticide and as a surface for mosquitos to land on.
- the mosquitos may sting into the hydrogel and ingest the insecticide produced by the microorganism and diffused through the filter 5 to the hydrogel.
- the hydrogel is self-healing or self-repairing, i.e. returns into its former shape when the mosquitoes withdraw their sting from the hydrogel.
- the hydrogel may, for example, be produced from l,8-octylene diacrylamide (ODA), N,N- dimethylacetamide (DMAc), poly(N,N-dimethylacrylamide) (PDMA), poly(acrylic acid)
- PAA triethylamine
- TAA triethylamine
- Glucose-inhibited promoter MlcRE MlcRE as annotated by Plumbridge (Plumbridge, J. Expression of ptsG , the gene for the major glucose PTS transporter in Escherichia coli, is repressed by Mlc and induced by growth on glucose. Mol. Microbiol. 29, 1053-1063 (1998)) was amplified from E. coli genome using Pre MlcRE f and MlcRE Suf r primers and inserted into pSBlC3 (SEQ ID NO: 58) by restriction cloning using EcoRI and Pstl, creating pSBlC3-MlcRE.
- MlcRE PCR product was additionally inserted into GFP-coding pSBlC3-BBa_E0840 (SEQ ID NO: 59) by restriction cloning using EcoRI and Xbal, creating pSBlC3-MlcRE- BBa_E0840.
- Competent DH5a E. coli cells were transformed with pSBlC3-MlcRE-BBa_E0840 and grown at 37°C to match an OD600 of 0.2.
- Present GFP was inactivated under high light, and cells were incubated with glucose at varying concentrations for 2 h. GFP expression was measured on a fluorescence plate reader as well as by flow cytometry, revealing an inverse correlation of promoter strength and glucose concentration.
- BBPre-BBa BOO 15-BBa_J23106-RnaG 120-MlcRE-BBSuf (SEQ ID NO: 66) was synthesized by Integrated DNA Technologies, Inc. (IDT). Synthetic DNA was amplified by PCR employing primers BBPre Syn f and BBSuf Syn r and inserted into pSBlC3 by restriction cloning using EcoRI and Pstl, creating pSBlC3-NOT_MlcRE. To test functionality a characterization construct like described for MlcRE was created, named pSBlC3-NOT_MlcRE-BBa_E0840.
- Competent DH5a E. coli cells are transformed with pSBlC3-NOT_MlcRE-BBa_E0840 and grown at 37°C to match an OD600 of 0.2.
- Present GFP is inactivated under high light, and cells are incubated with glucose at varying concentrations for 2 h. GFP expression is measured on a fluorescence plate reader as well as by flow cytometry, revealing an inverse correlation of promoter strength and glucose concentration.
- Lactic acid production (see Fig. 3B) ldhA was amplified from E. coli genome employing primers XbaI_34_ldhA_f and ldhA Suf r, creating BBa_B0034-ldhA flanked by Xbal restriction site and BioBrick Suffix.
- NOT MlcRE PCR product like described above was digested with EcoRI and Spel
- BBa_B0034-ldhA was digested with Xbal and Pstl
- pSBlC3 was digested with EcoRI and Pstl, and ligated with both inserts in a three-point ligation, giving rise to pSBlC3_NOT-MlcRE-BBa_B0034-ldhA.
- Bsal-BBPre-NOT MlcRE-Bsal was amplified from pSBlC3-NOT_MlcRE by PCR employing primers BsaI BBPre f and BsaI RnaG r.
- BBPre-ADH2-BBSuf (SEQ ID NO: 65) was synthesized by IDT, and BBa_B0030-ADH2 was amplified by PCR employing primers BsaI_ADH2_f and BsaI_ADH2_r.
- BBPre-kivD-BBSuf (SEQ ID NO: 69) was synthesized by IDT, and BBa_B0034-kivD was amplified by PCR employing primers Bsal kivD f and Bsal kviD r.
- LeuA, -B, -C, and -D were amplified by PCR from E. coli genome using Primers Bsal LeuA f and Bsal LeuA r, Bsal LeuB f and Bsal LeuB r, Bsal LeuC f and
- Bsal LeuC r and Bsal LeuD f and Bsal LeuD r, respectively.
- pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0030-ADH2- BBa_B0034-kivD-LeuABCD-BBSuf.
- pGGA-BBPre-NOT_MlcRE-BBa_B0030-ADH2- BBa_B0034-kivD-LeuABCD-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3-NOT_MlcRE-BBa_B0030-ADH2-BBa_B0034-kivD-LeuABCD.
- Glucose-induced 3 -methyl- 1 -butanol production is characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0030-ADH2-BBa_B0034-kivD-LeuABCD. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. 3 -methyl- 1 -butanol concentration is measured in supernatant medium by HPLC.
- Bsal-BBPre-NOT MlcRE-Bsal was amplified by PCR as described above.
- BBa_B0030-accA, BBa_B0032-accB, and BBa_B003l-tesA were amplified by PCR from E. coli genome, employing primers Bsal accA f and Bsal accA r, Bsal accB f and Bsal accB r, and Bsal tesA f and Bsal tesA r, respectively.
- BBPre-accC-BBSuf (SEQ ID NO: 63) and BBPre- accD-BBSuf (SEQ ID NO: 64) were synthesized by IDT, and synthetic DNA was amplified using Bsal accC f and Bsal accC r, and Bsal accD f and Bsal accD r, respectively.
- pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0030-accA- accD-BBa_B0032-accB-accC-BBa_B0031 -tesA-BBSuf.
- pGGA-BBPre-NOT MlcRE- BBa_B0030-accA-accD-BBa_B0032-accB-accC-BBa_B003l-tesA-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3- NOT_MlcRE-BBa_B0030-accA- accD-BBa_B0032-accB-accC-BBa_B0031 -tesA.
- Bsal-BBPre-NOT MlcRE-Bsal was amplified by PCR as described above.
- BBPre-BjalT- OmpTSite-FLAG-BBSuf (SEQ ID NO: 68) was synthesized by IDT, and synthetic DNA was amplified by PCR, employing primers Bsal BjalT f and Bsal BjalT r.
- BBa_K554002 was amplified from pSBlC3-BBa_K554002 (SEQ ID NO: 61) by PCR, employing primers Bsal hlyA f and BsaI BBSuf r.
- pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0034-BjaIT- Linker-OmpTSite-FLAG-HlyA-BBSuf.
- pGGA-BBPre-NOT_MlcRE-BBa_B0034-BjaIT- Linker-OmpTSite-FLAG-HlyA-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA.
- Glucose-induced insecticide production is characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. Cell lysate is analyzed by SDS PAGE and Western Blot, employing [animal] -anti- FLAG primary and [animal2] -anti- [animal] -HRP conjugated secondary antibodies.
- BBa_K206000 was amplified by PCR from pSBlC3-BBa_K206000 (SEQ ID NO: 60), employing primers BsaI BBPre f and BsaI_pBAD_r.
- RBS-HlyB-RBS-HlyD-RBS-TolC was amplified by PCR from pSBlC3-BBa_K5540l3 (SEQ ID NO: 62) in two segments, employing primers BsaI HlyB f and BsaI HlyB r for the first segment, and Bsal TolC f, and
- Bsal TolC r for the second segment.
- OmpT was amplified by PCR from E. coli genome, employing primers Bsal OmpT f and Bsal OmpT r.
- pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-BBa_K206000-HlyB-HlyD-TolC- OmpT-BBSuf.
- pGGA-BBPre-BBa_K206000-HlyB-HlyD-TolC-OmpT-BBSuf and pSBlK3 were digested with EcoRI and Pstl, and ligated, creating pSBlK3-BBa_K206000-HlyB-HlyD- TolC-OmpT.
- Competent E. coli DH5a are transformed with pSBlK3-BBa_K206000-HlyB-HlyD-TolC- OmpT and pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA.
- Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h.
- Cell lysate and medium supernatant are analyzed by SDS PAGE and Western Blot, employing [animal] -anti-FLAG primary and [animal2] -anti- [animal] -HRP conjugated secondary antibodies.
- BBPre-BBa_I7l80l8-BBSuf (SEQ ID NO: 67) was synthesized by IDT, and synthetic DNA was amplified by PCR, employing primers BsaI BBPre f and Bsal dapAP r.
- RBS-cbtA was amplified by PCR from E. coli genome using BsaBOcbtA, BsaI32cbtA and BsaI34cbtA as forward primers and Bsal cbtA r as reverse primer.
- RBS-cspD was amplified by PCR from E. coli genome using BsaBOcspD, BsaI32cspD and BsaI34cspD as forward primers and
- RBS-mraZ was amplified by PCR from E. coli genome using BsaBOmraZ, BsaI32mraZ and BsaI34mraZ as forward primers and Bsal mraZ r as reverse primer.
- RBS-sulA was amplified by PCR from E. coli genome using BsaBOsulA, BsaI32sulA and BsaI34sulA as forward primers and Bsal sulA r as reverse primer.
- pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to a mixture of pGGA-BBPre-BBa_I7l80l8-RBS- cbtA-RBS-cspD-RBS-mraZ-RBS-sulA-BBSuf containing a random combination of BBa_B0030, BBa_B0032, and BBa_B0034 as ribosome binding sites. Competent E.
- a construct containing a working ribosome binding site combination is selected from the random pool of colonies.
- LB medium containing chloramphenicol is inoculated with cells dyed with CFDA. Cells are incubated at 37°C for two days and selected for high CFDA fluorescence indicating limited cell division rates by FACS. Sorted cells are grown on LB-Agar plates containing chloramphenicol and diaminopimelic acid. Colonies are screened by Sanger Sequencing, and the most common combination of ribosome binding sites is selected as final construct.
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Abstract
The invention provides an animal luring device (1), comprising • a) a first compartment (2) containing genetically engineered first microorganisms, the genetically engineered first microorganisms being genetically engineered in that they produce and release i) an attractant attracting an animal and ii) an active agent, • b) an area or second compartment (3), which is freely accessible to the animal, and connected to the first compartment (2) in a manner that the attractant and the active agent are able to pass to the area or second compartment (3), whereas the genetically engineered first microorganisms are not, and • c) a nutrient source for the genetically engineered first microorganisms. The animal luring device of the invention has an improved longevity.
Description
ANIMAL LURING DEVICE
The invention relates to an animal luring device.
Animal luring devices are widely used to attract, study, trap or kill animals. In particular, such devices are frequently applied to trap vermin or pests like rodents or mosquitoes. A variety of animal luring devices, for example mosquito traps, is commercially available using different lure molecules, e.g. carbon dioxide, and killing mechanisms like insecticides, electricity, or sticky surfaces. An example for an insect/arthropod trap is described in US 6920716 B2.
Currently available traps have limited longevity or other drawbacks. Many lure molecules, for example, deplete quickly due to their volatile nature, and traps relying on electricity depend on electrical infrastructure. If chemical insecticides or glue is used, longevity is limited due to expiration and exhaustion of the mechanism. Currently, these problems are accounted for by active maintenance of the trap. Traps must be cleaned, replaced, maintained, or refilled frequently.
It is an object of the invention to provide an animal luring device with improved longevity.
In order to solve the object, the invention provides an animal luring device, comprising a) a first compartment containing genetically engineered first microorganisms, the genetically engineered first microorganisms being genetically engineered in that they produce and release i) an attractant attracting an animal and ii) an active agent,
b) an area or second compartment, which is freely accessible to the animal, and connected to the first compartment in a manner that the attractant and the active agent are able to pass to the area or second compartment, whereas the genetically engineered first microorganisms are not, and
c) a nutrient source for the genetically engineered first microorganisms.
The invention makes use of genetically engineered microorganisms producing and releasing an attractant and an active agent, thus providing the attractant and the active agent in a sustained manner. In order to keep the microorganisms alive over a long period of time, the device also
contains a nutrient source for the microorganisms, preferably a sustained-release nutrient source providing nutrients for the microorganisms in a sustained manner.
The term“animal luring device” refers to a device being designed to attract and trap, capture, kill or otherwise treat animals, in particular vermin and pests like mosquitoes. The term“animal trap” may also be used here synonymously, without intending to delimit the function of the device to only capturing or killing animals.
The term“genetically engineered microorganisms” refers to microorganisms, the genome of which has been biotechno logically modified compared to the wild-type microorganism and/or into which genetic material, preferably foreign DNA, has been biotechno logically introduced, e.g. by means of a suitable gentic vector like a plasmid. The modification may i.a. comprise the introduction of a foreign gene or trait, or of an additional copy of an own gene, or the introduction or elimination of gene regulatory elements. The term“genetically engineered first microorganisms being genetically engineered in that they produce and release i) an attractant attracting an animal and ii) an active agent” does not mean that each cell of the first
microorganisms is so genetically engineered that it produces and releases both an attractant and an active agent. Rather, the term encompasses the case where there are at least two different fractions within the first microorganisms, one fraction being genetically engineered to produce an attractant, a second fraction being genetically engineered to produce an active agent.
The term“attractant” refers to any inorganic or organic chemical compound or composition, or any other physico-chemical means, which attracts a targeted animal. Exemplary chemicals attracting mosquitoes, for example, are carbon dioxide, ammonia or lactate. The term also encompasses physico-chemical means attracting an animal, e.g. heat (warmth) or light.
An“active agent” as used herein is meant to be any compound or composition having an effect on a targeted animal. The effect may be, in one exemplary setting, weakening or killing the targeted animal. In another setting, however, the intended effect may also be to feed, strengthen, cure or vaccinate a targeted animal.
The term“sustained-release nutrient source” as used herein refers to a nutrient source steadily releasing a suitable nutrient, preferably at least a carbon and/or energy source, keeping a microorganism alive over a comparatively long period of time. In particular, the term refers to a nutrient source providing nutrients keeping the genetically engineered microorganisms present in the animal luring device of the invention alive for a period of at least 5 days, preferably at least one week, or at least two, three, four, five, six seven or eight weeks. Such a sustained- release nutrient source may, for example, be or comprise a polymer that can be biologically degraded by the microorganisms, e.g. via enzymes excreted by the microorganisms. The term also encompasses a separate culture of microorganisms providing a nutrient for the genetically engineered microorganisms. A nutrient source preferably provides the genetically engineered microorganisms with at least a suitable carbon and/or energy source, and preferably
additionally with any macro- and micronutrients, for example nitrogen, required by the genetically engineered microorganism. The term“nutrient source” encompasses a composition or combination of separate nutrient sources separately providing different nutrients, e.g. a carbon source, a nitrogen source, a phosphorus source etc.
The animal luring device of the invention is designed such that the genetically engineered first microorganisms are confined to a first compartment of the device in order not to allow them to escape into the environment. The device is, however, also designed to allow the attractant and the active agent to leave the first compartment and to pass to an area or second compartment, where it is accessible to the animals to be attracted. The first compartment with the genetically engineered first microorganisms confined therein and the area or second compartment are therefore interconnected, preferably via fluidic communication, however, in a manner that does not allow the genetically engineered microorganisms to leave the first compartment and to get to the area or second compartment and into the environment. This may, for example, be achieved by separating the first compartment from the area or second compartment via a filter, which is permeable for the attractant and the active agent, but not for the genetically engineered first microorganisms. Such filters are available and could, for example consist of or comprise a nitrocellulose nano filter. Further, the animal luring device of the invention is designed in a manner that the attracted animals are not able to get in direct contact with or ingest the genetically engineered first microorganisms.
In a preferred embodiment the animal luring device according to the invention further comprises
d) a third compartment containing second microorganisms providing a nutrient source for the genetically engineered first microorganisms, wherein the third compartment is connected to the first compartment in a manner that the nutrient source is able to pass to the first compartment, whereas the second microorganisms are not, and wherein the first microorganisms are not able to pass to the third compartment.
In this preferred embodiment a nutrient source for the genetically engineered first
microorganisms, for example genetically engineered chemoheterotrophic bacteria like E. coli, is produced and provided by second microorganisms, which may also be genetically engineered or not. The second microorganisms are preferably microorganisms, which do not need an organic carbon and energy source, and are thus preferably photoautotrophic. The third compartment of the animal luring device is therefore preferably permeable to light as energy source and carbon dioxide as carbon source for the photoautotrophic microorganisms. Most preferred, the second microorganisms are Cyanobacteria. The compartments with the first and second microorganisms are connected with each other, however, in a manner that neither the first nor the second microorganisms are able to leave their own compartment and to move to the other compartment. The nutrient source provided by the second microorganisms preferably includes all macro- and micronutrients required by the genetically engineered first
microorganisms. In this manner, the second microorganisms may provide all nutrients necessary for a long-term survival of the first microorganisms, such that this embodiment of the animal luring device of the invention is at least essentially self-sustaining.
The second microorganisms, e.g. Cyanobacteria, may, for example, provide the first microorganisms, e.g. E. coli, with a nutrient source by simply growing and dying. In this case, the second microorganisms need not to be genetically engineered. Cell lysate, e.g.
Cyanobacterium lysate, is a suitable nutrient source for E. coli, for example. The second microorganisms, for example Cyanobacteria, may, however, also be genetically engineered in that they produce and release a nutrient source, e.g. Glucose, for the genetically engineered first microorganisms. It is especially preferred to use nitrogen-fixing Cyanobacteria in order to also provide a nitrogen source for the first microorganisms.
Alternatively or additionally to the second microorganisms, the animal luring device may comprise a polymer that is enzymatically degradable by the genetically engineered first microorganisms as a nutrient source for the first microorganisms. The polymer may, for example, be a slowly degrading carbohydrate polymer, e.g. a glucose-xylose hybrid polymer. Cellulase enzymes, secreted by E. coli, for example, would degrade the polymer, releasing glucose and xylose. Xylose inhibits cellulase activity and thus ensures long-term functionality. The polymer may, for example, be arranged in the first compartment together with the first microorganisms. It would, however, also be possible to arrange the polmyer in a separate compartment connected to the first compartment, such that enzymes excreted by the first microorganisms are able to enter the compartment and the nutrients released are able to pass to the first compartment with the first microorganisms, while the first microorganisms are not able to pass to the compartment with the polymer. The polymer preferably provides at least a source of carbon and energy to the first microorganisms. The term“polymer” also encompasses a composition or combination of different polymers serving the purpose of delivering a nutrient or nutrients to the first microorganisms.
In an especially preferred embodiment of the invention, the genetically engineered first microorganisms are growth inhibited. In a preferred embodiment of the invention, the genetically engineered first microorganisms are further genetically engineered in that they are growth-inhibited. As an example, the microorganisms, e.g. E. coli, may be engineered such that they overexpress genes which regulate reproduction. For E. coli, this could include, for example, overexpression of cspD for DNA synthesis inhibition, mraZ for cell wall synthesis inhibition, cbtA for cell elongation inhibition and/or sulA for cell division inhibition. The growth inhibition preferably only limits cell division and does not kill surplus bacteria to prevent a possible negative impact of lysed bacteria on the culture. This is especially usefull when E. coli is used as a first microorganism, since E. coli, once grown to density, may accumulate toxic substances which endanger the media microenvironment. It is within the ordinary skill to choose and implement a usefull strategy to achive growth-inhibition, e.g. to choose and implement a suitable biotechnological engineering approach.
It is to be noted here again that it is not necessary, and not preferred, to engineer all first microorganisms in the same way, such that any of the cells have the same mutation(s) and/or are transformed with the same construct(s). Rather, it is preferred that a first fraction of the cells is engineered such that the cells produce an attractant and a second fraction of the cells is engineered such that the cells produce the active agent. In case that more than one attractant and/or active agent is used, there may be different cells being engineered accordingly. It is, however, preferred that all cells are engineered such that they are growth inhibited.
The attractant is chosen dependent on the animals to be attracted. In case the animal luring device is intended for attracting moths, for example, the attractant may be a pheromone. In case of mosquitos, for example, the attractant can be heat, lactate, 3 -methyl- 1 -butanol or myristic acid, or a combination thereof. For producing heat, the first microorganisms, e.g. E. coli, may be engineered to express alternative oxidase la from Nelumbo nucifera (see Graves, C. & Holmes, S. PartBBa K410000, 2010. Available at: http://parts.igem.org/Part:BBa_K4l0000; Accessed: l3th August 2018; Grant, N. et al., 2009, Two Cys or Not Two Cys? That Is the Question; Alternative Oxidase in the Thermogenic Plant Sacred Lotus, Plant Physiology 150, 987-995, DOI: https://doi.org/l0.1104/rr.109.139394). The biotechnological production of the known mosquito attractants lactate (L-Lactic acid), 3 -methyl- 1 -butanol, and myristic acid, is within the ordinary skill of the skilled person (see, for example, Verhulst, N. O. et al.
Improvement of a synthetic lure for Anopheles gambiae using compounds produced by human skin microbiota. Malar. J. 10, 28 (2011); Connor, M. R., Cann, A. F. & Liao, J. C. 3-Methyl-l- butanol production in Escherichia coli: random mutagenesis and two-phase fermentation. Appl. Microbiol. Biotechnol. 86, 1155-1164 (2010); Xiao, S. et al. 3 -Methyl- 1 -butanol Biosynthesis in an Engineered Corynebacterium glutamicum. Mol. Biotechnol. 58, 311-318 (2016); Afzal, M. I. et al. Biosynthesis and role of 3-methylbutanal in cheese by lactic acid bacteria: Major metabolic pathways, enzymes involved, and strategies for control. Crit. Rev. Food Sci. Nutr.
57, 399-406 (2017); Mathew, N., Ayyanar, E., Shanmugavelu, S. & Muthuswamy, K.
Mosquito attractant blends to trap host seeking Aedes aegypti. Parasitol. Res. 112, 1305-1312 (2013); Xu, P. et al. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 4, 1409 (2013)). Lactate, for example, may be produced in E. coli by overexpression of lactate dehydrogenase (ldhA).
The active agent may be a compound or composition that is toxic to the targeted animal. This is preferred in embodiments, where it is desired to kill the animal, e.g. an insect pest being at least potentially harmful to human beings, pets or crops, for example Malaria transmitting Anopheles mosquitoes.
In a preferred embodiment of the invention the active agent is a scorpion toxin. An example of a suitable scorpion toxin killing Anopheles mosquitoes is the Black Scorpion alpha Insect Toxin BjalT (see CN 106754944 A; Arnon, T. et ah, BjalT: a novel scorpion a-toxin selective for insects - unique pharmacological tool. Insect Biochem. Mol. Biol. 35, 187-195 (2005)).
The genetically engineered first microorganisms, e.g. E. coli, or a fraction thereof, are genetically engineered in that they express and secrete BjalT. To this end, a construct may, for example, be introduced into the first microorganisms, or a fraction thereof, comprising the BjalT coding sequence, preferably a codon-optimized BjalT coding sequence, and sequences coding for a linker containing an outer membrane protease (OmpT) site, a FLAG tag and an hlyA signal peptide for secretion.
Alternatively, the active agent can be a compound or composition being toxic for a pathogen infesting the animal, or a compound or composition immunizing or vaccinating the animal against a pathogen infesting the animal. In this embodiment of the invention, the animal can, for example, be freed from an endopathogen being harmful to a human being when transmitted from the animal to the human being. For example, the active agent can be a compound being toxic for a Plasmodium species infesting Anopheles mosquitoes.
The animal to be lured by the animal luring device of the invention can be any animal, which can be attracted by an attractant. Preferably, the targeted animal is a pest or vermin, e.g. a rodent, an arthropod, e.g. arachnid or insect, e.g. stinging insect, or other harmful, annoying or detrimental animal. Especially preferred, the targeted animal is an insect, for example an insect of the suborder Nematocera, e.g. a mosquito, or an arachnid, e.g. a mite. The animal luring device of the invention is particularly useful for, but not limited to, luring mosquitoes, for example mosquitoes of the genus Anopheles transmitting Malaria, e.g. Anopheles gambiae, or mosquitoes of the genera Aedes, Culex, Culiseta, Haemagogus, or Ochlerotatus.
In a preferred embodiment of the invention, the genetically engineered first microorganisms are genetically engineered E. coli cells. Further preferred, the genetically engineered first microorganisms are genetically engineered E. coli cells and the second microorganisms are genetically engineered Cyanobacteria genetically engineered in that they produce and release the nutrient source for the genetically engineered E. coli cells.
In the following, the invention is further described for illustration purposes only by way of the attached figures and examples.
Figure 1. Simplified schematic longitudinal section (A) of an embodiment of the animal luring device of the invention and top view (B) of a part of the animal luring device of Fig. 1A.
Figure 2. Perspective view of the embodiment of the animal luring device of the invention of Fig. 1. Part of the device is shown in section.
Figure 3, 4. DNA constructs.
Figure 1 shows a simplified schematic longitudinal section (A) of an embodiment of the animal luring device 1 of the invention and a top view (B) of a part of the animal luring device of Fig.
1 A. Figure 2 shows a perspective view of the embodiment of the animal luring device of the invention schematically depicted in Figure 1.
The animal luring device 1, which is especially adapted and suitable for luring mosquitoes, comprises a cylindrical first compartment 2 containing the genetically engineered first microorganisms, here genetically engineered E. coli cells. The E. coli cells are genetically engineered in that they produce and release an attractant attracting mosquitoes and an active agent, here an insecticide killing the mosquitoes. A filter 5, permeable for the attractant and the active agent, but not permeable to the first microorganisms, is arranged above the first compartment 2, separating the first compartment 2 from an area or compartment 3, which is freely accessible for mosquitoes. The filter 5, for example a nitrocellulose nano filter, is arranged on a filter support 6 formed by annular projections inwardly projecting into the first compartment 2 from the cylindrical wall 10 of the first compartment 2. The filter 5 is secured
from above by a clamping ring 7, a top view of which is shown in Fig. 1B. The genetically engineered first microorganisms are thus confined to the first compartment 2. The
microorganisms are not able to pass the filter 5 and cannot escape from the first compartment 2.
In this embodiment, the animal luring device 1 of the invention comprises a third compartment 4 containing second microorganisms, in this case genetically engineered Cyanobacteria. The Cyanobacteria are genetically engineered in that they produce glucose in order to feed the E. coli cells in the first compartment. The third compartment 4 is essentially funnel-shaped and has a lower cylindrical section 11 and an upper conically widening section 12. A cover 9 covers the third compartment 4. At least part of the compartment 4, e.g. the cover 9, is permeable to light and carbon dioxide. To this end, the compartment 4 or at least part of it may consist of a transparent plastic material. The compartment 4 can, for example, be reversibly attached to the clamping ring 7 via a screw connection 8.
A hydrogel (not depicted here) may be arranged upon the filter 5. The hydrogel may act as a reservoir for the insecticide and as a surface for mosquitos to land on. The mosquitos may sting into the hydrogel and ingest the insecticide produced by the microorganism and diffused through the filter 5 to the hydrogel. Preferably, the hydrogel is self-healing or self-repairing, i.e. returns into its former shape when the mosquitoes withdraw their sting from the hydrogel. The hydrogel may, for example, be produced from l,8-octylene diacrylamide (ODA), N,N- dimethylacetamide (DMAc), poly(N,N-dimethylacrylamide) (PDMA), poly(acrylic acid)
(PAA) or triethylamine (TEA).
Examples
DNA constructs
Recurring basic parts
Glucose-inhibited promoter MlcRE
MlcRE as annotated by Plumbridge (Plumbridge, J. Expression of ptsG , the gene for the major glucose PTS transporter in Escherichia coli, is repressed by Mlc and induced by growth on glucose. Mol. Microbiol. 29, 1053-1063 (1998)) was amplified from E. coli genome using Pre MlcRE f and MlcRE Suf r primers and inserted into pSBlC3 (SEQ ID NO: 58) by restriction cloning using EcoRI and Pstl, creating pSBlC3-MlcRE. To measure promoter strength, MlcRE PCR product was additionally inserted into GFP-coding pSBlC3-BBa_E0840 (SEQ ID NO: 59) by restriction cloning using EcoRI and Xbal, creating pSBlC3-MlcRE- BBa_E0840.
Competent DH5a E. coli cells were transformed with pSBlC3-MlcRE-BBa_E0840 and grown at 37°C to match an OD600 of 0.2. Present GFP was inactivated under high light, and cells were incubated with glucose at varying concentrations for 2 h. GFP expression was measured on a fluorescence plate reader as well as by flow cytometry, revealing an inverse correlation of promoter strength and glucose concentration.
RnaGl20-based inverter of MlcRE (see Fig. 3 A)
BBa_B00l5-BBa_J23 l06-RnaGl20-MlcRE, called NOT-MlcRE hereafter, was designed in silico based on parts BBa_B00l5 and BBa_J23 l06 taken from the iGEM Parts Registry, RnaGl20 as annotated by Tran et al. (Tran, C. N. et al. A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri. Nucleic Acids Res. 39, 8122-34 (2011)), and MlcRE as described above. BBPre-BBa BOO 15-BBa_J23106-RnaG 120-MlcRE-BBSuf (SEQ ID NO: 66) was synthesized by Integrated DNA Technologies, Inc. (IDT). Synthetic DNA was amplified by PCR employing primers BBPre Syn f and BBSuf Syn r and inserted into pSBlC3 by restriction cloning using EcoRI and Pstl, creating pSBlC3-NOT_MlcRE. To test functionality a characterization construct like described for MlcRE was created, named pSBlC3-NOT_MlcRE-BBa_E0840.
Competent DH5a E. coli cells are transformed with pSBlC3-NOT_MlcRE-BBa_E0840 and grown at 37°C to match an OD600 of 0.2. Present GFP is inactivated under high light, and cells are incubated with glucose at varying concentrations for 2 h. GFP expression is measured on a
fluorescence plate reader as well as by flow cytometry, revealing an inverse correlation of promoter strength and glucose concentration.
Composite constructs
Lactic acid production (see Fig. 3B) ldhA was amplified from E. coli genome employing primers XbaI_34_ldhA_f and ldhA Suf r, creating BBa_B0034-ldhA flanked by Xbal restriction site and BioBrick Suffix. NOT MlcRE PCR product like described above was digested with EcoRI and Spel, BBa_B0034-ldhA was digested with Xbal and Pstl, and pSBlC3 was digested with EcoRI and Pstl, and ligated with both inserts in a three-point ligation, giving rise to pSBlC3_NOT-MlcRE-BBa_B0034-ldhA.
Glucose-induced lactic acid production are characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0034-ldhA. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. lactic acid concentration is measured in supernatant medium.
3 -methyl- 1 -butanol production (see Fig. 3C)
Bsal-BBPre-NOT MlcRE-Bsal was amplified from pSBlC3-NOT_MlcRE by PCR employing primers BsaI BBPre f and BsaI RnaG r. BBPre-ADH2-BBSuf (SEQ ID NO: 65) was synthesized by IDT, and BBa_B0030-ADH2 was amplified by PCR employing primers BsaI_ADH2_f and BsaI_ADH2_r. BBPre-kivD-BBSuf (SEQ ID NO: 69) was synthesized by IDT, and BBa_B0034-kivD was amplified by PCR employing primers Bsal kivD f and Bsal kviD r. LeuA, -B, -C, and -D were amplified by PCR from E. coli genome using Primers Bsal LeuA f and Bsal LeuA r, Bsal LeuB f and Bsal LeuB r, Bsal LeuC f and
Bsal LeuC r, and Bsal LeuD f and Bsal LeuD r, respectively. pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0030-ADH2-
BBa_B0034-kivD-LeuABCD-BBSuf. pGGA-BBPre-NOT_MlcRE-BBa_B0030-ADH2- BBa_B0034-kivD-LeuABCD-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3-NOT_MlcRE-BBa_B0030-ADH2-BBa_B0034-kivD-LeuABCD.
Glucose-induced 3 -methyl- 1 -butanol production is characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0030-ADH2-BBa_B0034-kivD-LeuABCD. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. 3 -methyl- 1 -butanol concentration is measured in supernatant medium by HPLC.
Myristic acid production (see Fig. 3D)
Bsal-BBPre-NOT MlcRE-Bsal was amplified by PCR as described above. BBa_B0030-accA, BBa_B0032-accB, and BBa_B003l-tesA were amplified by PCR from E. coli genome, employing primers Bsal accA f and Bsal accA r, Bsal accB f and Bsal accB r, and Bsal tesA f and Bsal tesA r, respectively. BBPre-accC-BBSuf (SEQ ID NO: 63) and BBPre- accD-BBSuf (SEQ ID NO: 64) were synthesized by IDT, and synthetic DNA was amplified using Bsal accC f and Bsal accC r, and Bsal accD f and Bsal accD r, respectively. pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0030-accA- accD-BBa_B0032-accB-accC-BBa_B0031 -tesA-BBSuf. pGGA-BBPre-NOT MlcRE- BBa_B0030-accA-accD-BBa_B0032-accB-accC-BBa_B003l-tesA-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3- NOT_MlcRE-BBa_B0030-accA- accD-BBa_B0032-accB-accC-BBa_B0031 -tesA.
Glucose-induced myristic acid production are characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0030-accA-accD-BBa_B0032-accB-accC- BBa_B003 l-tesA. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. 3 -methyl- 1 -butanol concentration is measured in supernatant medium by HPLC.
Insecticide production (see Fig. 4A)
Bsal-BBPre-NOT MlcRE-Bsal was amplified by PCR as described above. BBPre-BjalT- OmpTSite-FLAG-BBSuf (SEQ ID NO: 68) was synthesized by IDT, and synthetic DNA was amplified by PCR, employing primers Bsal BjalT f and Bsal BjalT r. BBa_K554002 was amplified from pSBlC3-BBa_K554002 (SEQ ID NO: 61) by PCR, employing primers Bsal hlyA f and BsaI BBSuf r. pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to pGGA-BBPre-NOT_MlcRE-BBa_B0034-BjaIT- Linker-OmpTSite-FLAG-HlyA-BBSuf. pGGA-BBPre-NOT_MlcRE-BBa_B0034-BjaIT- Linker-OmpTSite-FLAG-HlyA-BBSuf and pSBlC3 were digested with EcoRI and Pstl, and ligated, creating pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA.
Glucose-induced insecticide production is characterized by transforming competent E. coli DH5a with pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. Cell lysate is analyzed by SDS PAGE and Western Blot, employing [animal] -anti- FLAG primary and [animal2] -anti- [animal] -HRP conjugated secondary antibodies.
Insecticide secretion (see Fig. 4B)
BBa_K206000 was amplified by PCR from pSBlC3-BBa_K206000 (SEQ ID NO: 60), employing primers BsaI BBPre f and BsaI_pBAD_r. RBS-HlyB-RBS-HlyD-RBS-TolC was amplified by PCR from pSBlC3-BBa_K5540l3 (SEQ ID NO: 62) in two segments, employing primers BsaI HlyB f and BsaI HlyB r for the first segment, and Bsal TolC f, and
Bsal TolC r for the second segment. OmpT was amplified by PCR from E. coli genome, employing primers Bsal OmpT f and Bsal OmpT r. pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the
protocol supplied with the kit, giving rise to pGGA-BBPre-BBa_K206000-HlyB-HlyD-TolC- OmpT-BBSuf. pGGA-BBPre-BBa_K206000-HlyB-HlyD-TolC-OmpT-BBSuf and pSBlK3 were digested with EcoRI and Pstl, and ligated, creating pSBlK3-BBa_K206000-HlyB-HlyD- TolC-OmpT.
Competent E. coli DH5a are transformed with pSBlK3-BBa_K206000-HlyB-HlyD-TolC- OmpT and pSBlC3-NOT_MlcRE-BBa_B0034-BjaIT-Linker-OmpTSite-FLAG-HlyA. Cells are grown at 37°C until OD600 of 0.2 prior to induction with glucose and incubation at 37°C for 2 h. Cell lysate and medium supernatant are analyzed by SDS PAGE and Western Blot, employing [animal] -anti-FLAG primary and [animal2] -anti- [animal] -HRP conjugated secondary antibodies.
To test insecticide function, a cotton pad is soaked with medium supernatant containing BjalT and placed in a mosquito cage. Mosquito survival rate upon contact with the pad is observed over several hours.
Growth inhibition (see Fig. 4C)
BBPre-BBa_I7l80l8-BBSuf (SEQ ID NO: 67) was synthesized by IDT, and synthetic DNA was amplified by PCR, employing primers BsaI BBPre f and Bsal dapAP r. RBS-cbtA was amplified by PCR from E. coli genome using BsaBOcbtA, BsaI32cbtA and BsaI34cbtA as forward primers and Bsal cbtA r as reverse primer. RBS-cspD was amplified by PCR from E. coli genome using BsaBOcspD, BsaI32cspD and BsaI34cspD as forward primers and
Bsal cspD r as reverse primer. RBS-mraZ was amplified by PCR from E. coli genome using BsaBOmraZ, BsaI32mraZ and BsaI34mraZ as forward primers and Bsal mraZ r as reverse primer. RBS-sulA was amplified by PCR from E. coli genome using BsaBOsulA, BsaI32sulA and BsaI34sulA as forward primers and Bsal sulA r as reverse primer. pGGA and all PCR products were assembled by GoldenGate Assembly, under digestion with Bsal and ligation with T4 DNA ligase from NEB Golden Gate Assembly Mix according to the protocol supplied with the kit, giving rise to a mixture of pGGA-BBPre-BBa_I7l80l8-RBS- cbtA-RBS-cspD-RBS-mraZ-RBS-sulA-BBSuf containing a random combination of
BBa_B0030, BBa_B0032, and BBa_B0034 as ribosome binding sites. Competent E. coli DH5a were transformed with pGGA-BBPre-BBa_I7l80l8-RBS-cbtA-RBS-cspD-RBS-mraZ-RBS- sulA-BBSuf and grown on LB-Agar plates containing chloramphenicol and diaminopimelic acid.
A construct containing a working ribosome binding site combination is selected from the random pool of colonies. LB medium containing chloramphenicol is inoculated with cells dyed with CFDA. Cells are incubated at 37°C for two days and selected for high CFDA fluorescence indicating limited cell division rates by FACS. Sorted cells are grown on LB-Agar plates containing chloramphenicol and diaminopimelic acid. Colonies are screened by Sanger Sequencing, and the most common combination of ribosome binding sites is selected as final construct.
Primers used:
Name Sequence SEQ ID NO:
BsaI_BBPre_f ccatgaggtctccggaggaattcgcggccgcttct 01
BsaI_BBSuf_r gcttcaggtctccatggctgcagcggccgctacta 02
BBPre_Syn_f caattgaattcgcggccgcttctaga 03
BBSuf_Syn_r gttaactgcagcggccgctactagt 04
Pre_MlcRE_f caatgaattcgcggccgcttctagagtttttttaaagctcgtaattaatggctaaaacgag 04
MlcRE_Suf_r cggactgcagcggccgctactagtagcgccctttatttattacacagagtaaaataattc 06
XbaI_34_ldhA_f gccgcttctagagaaagaggagaaatactagatgaaactcgccgtttatagcacaaaac 07 ldhA_Suf_r cggactgcagcggccgctactagtaaaccagttcgttcgggcagg 08
BsaI_RnaG_r ggacttggtctccaatctttttttaaagctcgtaattaatggctaaaacgagt 09
BsaI_ADH2_f acaagcggtctccgattaaagaggagaaatactagatgtccattcctgagactcaaaaggc 10
BsaI_ADH2_r acaagcggtctcctctttttatttagatgtatccacgacgtaccggc 11
BsaI_kivD_f acaagcggtctcgaagaggagaaatactagatgtatacagtaggagattacctattagaccgattac 12
BsaI_kivD_r acaagcggtctcggatttattttgttcagcaaatagtttgcccat 13
BsaI_LeuA_f acaagcggtctccaatcataaaaaagagacaaggacccaaaccatgagcc 14
BsaI_LeuA_r acaagcggtctcccgacatcacacggtttccttgttg 15
BsaI_LeuB_f acaagcggtctccgtcgaagaattaccatattgccgtattgc 16
BsaI_LeuB_r acaagcggtctcctacaccccttctgctacatagcgg 17
Bsal LeuC f acaagcggtctcgtgtaatcatggctaagacgttatacgaaaaattg 18
Bsal LeuC r acaagcggtctcggtgctccttatttaatgttgcgaatgtcg 19
Bsal LeuD f acaagcggtctccgcacaccatggcagagaaatttatcaaac 20
Bsal leuD r acaagcggtctccatggctgcagcggccgctactagtattaattcataaacgcaggttgttttgcttc 21
Bsal accA f gatcacggtctccgattattaaagaggagaaatactagatgagtctgaatttccttgattttgaacagcc 22
Bsal accA r gatcacggtctccatgacattacgcgtaaccgtagctcatcag 23
Bsal accB f gatcacggtctcccacacaggaaagtactagatggatattcgtaagattaaaaaactgatcgagctg 24
Bsal accB r gatcacggtctccttactcgatgacgaccagcgg 25
Bsal tesA f gatcacggtctccactagagtcacacaggaaacctactagatgatgaacttcaacaatgttttccgctg 26
Bsal tesA r gatcacggtctccatggctgcagcggccgctactagtattatgagtcatgatttactaaaggctgcaactg27
Bsal accC f gatcacggtctccgtaatgcttgacaagatcgttattgccaac 28
Bsal accC r gatcacggtctcctagtattatttttcttgcagtccaagctttttttctaaataatgaatat 29
Bsal accD f gatcacggtctcctcatggatcgaacgaataaaatctaacattacgc 30
Bsal accD r gatcacggtctcctgtgactctagtattaagcttccggttcctgatcc 31
Bsal BjalT f ggacttggtctcggattaaagaggagaaatactagatgggtcgggatgcttatattgcg 32
Bsai BjalT r ggacttggtctcgctaatttatcgtcgtcatctttataatcgccg 33
BsaI HlyA f ggacttggtctcgttagcctatggaagtcagggtgatct 34
BsaI_pBAD_r agagacggtctccaatcgctagcccaaaaaaacggtatggag 35
BsaI HlyB f tcccaaggtctccgattattaaagaggagaaaatggattcctgtcacaag 36
BsaI HlyB r tcccaaggtctcccagacccagctgtggtaacagc 37
Bsal TolC f tcccaaggtctcgtctgggcgcggattatacatacag 38
Bsal TolC r tcccaaggtctcgcgcatttattaattgcggaacggattatgcccg 39
Bsal OmpT f tcccaaggtctcgtgcgattaaagaggagaaaatgcgggcgaaacttctgggaatag 40
Bsal OmpT r gcttcaggtctccatggctgcagcggccgctactagtaaaatgtgtacttaagaccagcagtagtg 41
Bsal dapAP r ccatgaggtctccaatccatcctctgtgcaaacaagtgt 42
BsaBOcbtA f ccatgaggtctccgattattaaagaggagaaatactagatgaaaacattacctgtattacccgggc 43
BsaBOcspD f ccatgaggtctcctgaaattaaagaggagaaatactagatggaaaagggtactgttaagtggttcaac 44
BsaBOmraZ f ccatgaggtctccgtcgattaaagaggagaaatactagatgttccggggagcaacg 45
BsaBOsulA f ccatgaggtctcctctaattaaagaggagaaatactagatgtacacttcaggctatgcacatc 46
BsaI32cbtA_f ccatgaggtctccgatttcacacaggaaagtactagatgaaaacattacctgtattacccgggc 47
BsaI32cspD_f ccatgaggtctcctgaatcacacaggaaagtactagatggaaaagggtactgttaagtggttcaac 48
BsaI32mraZ f ccatgaggtctccgtcgtcacacaggaaagtactagatgttccggggagcaacg 49
BsaI32sulA_f ccatgaggtctcctctatcacacaggaaagtactagatgtacacttcaggctatgcacatc 50
BsaI34cbtA_f ccatgaggtctccgattaaagaggagaaatactagatgaaaacattacctgtattacccgggc 51
BsaI34cspD_f ccatgaggtctcctgaaaaagaggagaaatactagatggaaaagggtactgttaagtggttcaac 52
BsaI34mraZ_f ccatgaggtctccgtcgaaagaggagaaatactagatgttccggggagcaacg 53 BsaI34sulA_f ccatgaggtctcctctaaaagaggagaaatactagatgtacacttcaggctatgcacatc 54
BsaI_cbtA_r ccatgaggtctccttcatttcgcctccggatacttacc 55
BsaI_cspD_r ccatgaggtctcccgaccttatgcgactgccgcttctactt 56
BsaI_mraZ_r ccatgaggtctcgtagattatagagacaagtcttgcagtcgc 57
Claims
1. An animal luring device (1), comprising
a) a first compartment (2) containing genetically engineered first microorganisms, the genetically engineered first microorganisms being genetically engineered in that they produce and release i) an attractant attracting an ani al and ii) an active agent,
b) an area or second compartment (3), which is freely accessible to the animal, and connected to the first compartment (2) in a manner that the attractant and the active agent are able to pass to the area or second compartment (3), whereas the genetically engineered first microorganisms are not, and
c) a nutrient source for the genetically engineered first microorganisms.
2. The animal luring device (1) according to claim 1, wherein the nutrient source is a sustained-release nutrient source.
3. The animal luring device (1) according to claim 1 or 2, comprising
d) a third compartment (4) containing second microorganisms providing a nutrient source for the genetically engineered first microorganisms, wherein the third compartment (4) is connected to the first compartment (2) in a manner that the nutrient source is able to pass to the first compartment (2), whereas the second microorganisms are not, and wherein the first microorganisms are not able to pass to the third compartment (4).
4. The animal luring device (1) according to claim 3, wherein the second microorganisms are Cyanobacteria and the third compartment (4) is permeable to light and carbon dioxide.
5. The animal luring device (1) according to claim 3 or 4, wherein the second
microorganisms are genetically engineered in that they produce and release a nutrient source for the genetically engineered first microorganisms.
6. The animal luring device (1) according to one of the preceding claims, wherein the animal luring device (1) comprises a polymer that is enzymatically degradable by the genetically engineered first microorganisms as a nutrient source.
7. The animal luring device (1) according to one of the preceding claims, wherein the genetically engineered first microorganisms are growth inhibited, preferably genetically engineered in that they are growth-inhibited.
8. The animal luring device (1) according to one of the preceding claims, wherein the attractant is selected from heat, lactate, 3 -methyl- 1 -butanol and myristic acid, or a combination thereof
9. The animal luring device (1) according to one of the preceding claims, wherein the active agent is a compound or composition toxic to the animal, or is a compound or composition being toxic for a pathogen infesting the animal, or is a compound or composition immunizing or vaccinating the animal against a pathogen infesting the animal.
10. The animal luring device (1) according to claim 9, wherein the active agent is a scorpion toxin.
11. The animal luring device (1) according to one of the preceding claims, wherein the animal is an insect, preferably a mosquito, or an arachnid, preferably a mite.
12. The animal luring device (1) according to one of the preceeding claims, wherein the genetically engineered first microorganisms are genetically engineered E. coli cells.
13. The animal luring device (1) according to one of claims 4 to 12, wherein the genetically engineered first microorganisms are genetically engineered E. coli cells and the second microorganisms are genetically engineered Cyanobacteria genetically engineered in that they produce and release a nutrient source for the genetically engineered E. coli cells.
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
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LULU100920 | 2018-09-05 | ||
DE102018121702 | 2018-09-05 | ||
LU100920A LU100920B1 (en) | 2018-09-05 | 2018-09-05 | Animal luring device |
DE102018121702.1 | 2018-09-05 |
Publications (1)
Publication Number | Publication Date |
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WO2020049118A1 true WO2020049118A1 (en) | 2020-03-12 |
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Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
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PCT/EP2019/073748 WO2020049118A1 (en) | 2018-09-05 | 2019-09-05 | Animal luring device |
Country Status (1)
Country | Link |
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WO (1) | WO2020049118A1 (en) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
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US20210315193A1 (en) * | 2018-10-26 | 2021-10-14 | Human Centered And Bio-Inspired Ideas For Daily Life S.R.L. In Sigla Hubilife S.R.L. | Bio-robotic device for luring and killing hematophagous arthropods |
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