WO2018187738A1 - Neomycin and paromomycin derivatives - Google Patents

Neomycin and paromomycin derivatives Download PDF

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Publication number
WO2018187738A1
WO2018187738A1 PCT/US2018/026547 US2018026547W WO2018187738A1 WO 2018187738 A1 WO2018187738 A1 WO 2018187738A1 US 2018026547 W US2018026547 W US 2018026547W WO 2018187738 A1 WO2018187738 A1 WO 2018187738A1
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Prior art keywords
nhr
substituted
methyl
ethyl
cho
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PCT/US2018/026547
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French (fr)
Inventor
David Crich
Girish SATI
Amr SONOUSI
Guanyu YANG
Appi Reddy MANDHAPATI
Michael G. PIRRONE
Takayuki Kato
Vikram SARPE
Andrea Vasella
Erik C. BOTTGER
Sven N. Hobbie
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Wayne State University
Universitat Zurich
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Priority to US16/603,230 priority Critical patent/US11466044B2/en
Publication of WO2018187738A1 publication Critical patent/WO2018187738A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H15/00Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
    • C07H15/20Carbocyclic rings
    • C07H15/22Cyclohexane rings, substituted by nitrogen atoms
    • C07H15/222Cyclohexane rings substituted by at least two nitrogen atoms
    • C07H15/226Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings
    • C07H15/228Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings attached to adjacent ring-carbon atoms of the cyclohexane rings
    • C07H15/232Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings attached to adjacent ring-carbon atoms of the cyclohexane rings with at least three saccharide radicals in the molecule, e.g. lividomycin, neomycin, paromomycin
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7028Compounds having saccharide radicals attached to non-saccharide compounds by glycosidic linkages
    • A61K31/7034Compounds having saccharide radicals attached to non-saccharide compounds by glycosidic linkages attached to a carbocyclic compound, e.g. phloridzin
    • A61K31/7036Compounds having saccharide radicals attached to non-saccharide compounds by glycosidic linkages attached to a carbocyclic compound, e.g. phloridzin having at least one amino group directly attached to the carbocyclic ring, e.g. streptomycin, gentamycin, amikacin, validamycin, fortimicins
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H15/00Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
    • C07H15/20Carbocyclic rings
    • C07H15/22Cyclohexane rings, substituted by nitrogen atoms
    • C07H15/222Cyclohexane rings substituted by at least two nitrogen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H15/00Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
    • C07H15/20Carbocyclic rings
    • C07H15/22Cyclohexane rings, substituted by nitrogen atoms
    • C07H15/222Cyclohexane rings substituted by at least two nitrogen atoms
    • C07H15/226Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings
    • C07H15/228Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings attached to adjacent ring-carbon atoms of the cyclohexane rings
    • C07H15/23Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings attached to adjacent ring-carbon atoms of the cyclohexane rings with only two saccharide radicals in the molecule, e.g. ambutyrosin, butyrosin, xylostatin, ribostamycin
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties.
  • the present disclosure further relates to use of the compounds in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
  • Aminoglycoside antibiotics are among the most potent and successful antibacterial therapeutics in medical history.
  • the development of next-generation aminoglycoside antibiotics will therefore need to rely on 4,5-disubstituted deoxystreptamines, which retain binding to and activity against G1405-methylated ribosomes.
  • next-generation aminoglycoside antibiotics need to be designed to circumvent the clinically most relevant aminoglycoside-modifying enzymes without compromising antibacterial potency or drug safety.
  • PAR paromomycin
  • NEO_B Neomycin B
  • paromomycin and neomycin are the examples of the (4,5) class
  • other related compounds include the (4,5) AGA lividomycin (LIV) and ribostamycin (RI B).
  • Xylostacin is the 3"-isomer of ribostamycin.
  • AMEs aminoglycoside modifying enzymes
  • APH(3') One of the more widespread classes of AME is the class of 3'-aminoglycoside phosphotransferases APH(3') whose various isoforms phosphorylate at the AGA 3'-position (ring I) in an ATP- dependent manner.
  • APH(3') has been found in a large variety of pathogens including E. coli, S. enterica, K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium, Photobacterium, Citrobacter, P. aeruginosa, S. maltophilia, S. aureus, Enterococcus, B. circulans, C. jejuni, and others (reviewed in
  • P. aeruginosa has a chromosomal APH(3') gene that makes it intrinsically resistant to most aminoglycoside antibiotics.
  • APH(3')-llla AME phosphorylates the 3'-deoxy 4,5-AGA lividomycin at the 5"-position leading to resistance in bacteria that carry this AME.
  • APH(3',5") isoforms are more effective at phosphorylation of the 5"-position than of the 3'- position.
  • Attempts to circumvent the ability of APH(3',5") AMEs to phosphorylate at the 5"-position described in the literature have involved the removal of the 5"-hydroxy group by deoxygenation and its replacement by halogen atoms, but these modifications result in a substantial loss of antibacterial activity.
  • Modifications involving oxidation of the 5" -alcohol to the corresponding aldehyde or carboxylic acid followed by the formation of oximes or amides also result in the loss of antibacterial activity.
  • the AAC(2') class of AMEs promote bacterial resistance by acetylation of the 2'-amino group of the AGAs giving the 2'-acetamido derivatives, which have lower affinity for the bacterial ribosome. Accordingly, an authentic sample of the 2'-N-acetamide of neomycin B (compound 183 of the present specification) has very significantly reduced activity against MRSA and E coli (see Tables 1 and 2 of example 3) as compared to the parent neomycin B.
  • AAC(2') may be blocked by removal of the 2'-amino group, by replacement of the 2'-amino group by a hydroxyl group or by a halogen atom, by alkylation of the 2'-amino group, or by acylation of the 2'-amino group with an acyl residue different from the acetyl group installed by the enzyme.
  • the influence of such modifications on antibacterial activity and ribosomal activity is not entirely predictable.
  • the AAC(2') resistance mechanism has been described for various gram-negative clinical pathogens; one aspect of clinical relevance is its occurrence as inherent resistance mechanism encoded on the chromosomes of Mycobacteria (see Drug Resistance Updates 13: 151).
  • Ototoxicity occurs in ways including: i) a random dose dependent manner in the common patient population, and ii) in an aggravated type in genetically susceptible individuals, with the latter linked to mutations in mitochondrial rRNA, in particular, the transition mutations A1555G and C1494U in the A-site of the mitochondrial ribosomal RNA subunit.
  • 2'-N-Formylation is known to be an acceptable (natural) modification of the 4,6-aminoglycoside sisomicin. It is not known as an acceptable modification in the 4,5-series.
  • aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties.
  • the disclosure further relates to use of the compounds of the disclosure in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
  • the objective of the present disclosure is to provide improved aminoglycoside derivatives that allow treatment of infections by pathogens carrying resistance determinants, and which are show less ototoxicity and nephrotoxicity in human patients. This objective is attained by the claims of the present specification.
  • One aspect of the present disclosure teaches that forcing the ring I 6' carbon into a particular conformation or set of conformations, which increase affinity for the ribosome and increase antibacterial activity.
  • these novel modifications of the AGA ring I overcome the action of at least two common aminoglycoside modifying enzymes and so, in addition to increased activity against wild-type bacteria, afford the possibility of use against resistant bacteria endowed with those AMEs.
  • FIGs. 1-18 depict chemical formulas described herein.
  • aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties.
  • the disclosure further relates to use of the compounds of the disclosure in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
  • the objective of the present disclosure is to provide improved aminoglycoside derivatives that allow treatment of infections by pathogens carrying resistance determinants, and which are show less ototoxicity and nephrotoxicity in human patients. This objective is attained by the claims of the present specification.
  • One aspect of the present disclosure teaches that forcing the ring I 6' carbon into a particular conformation or set of conformations, which increase affinity for the ribosome and increase antibacterial activity.
  • these novel modifications of the AGA ring I overcome the action of at least two common aminoglycoside modifying enzymes and so, in addition to increased activity against wild-type bacteria, afford the possibility of use against resistant bacteria endowed with those AMEs.
  • a C1-C4 alkyl in the context of the present disclosure signifies a saturated linear or branched hydrocarbon having 1 , 2, 3 or 4 carbon atoms, wherein in particular embodiments one carbon- carbon bond may be unsaturated and one CH2 moiety may be exchanged for oxygen (ether bridge) or nitrogen (NH, or NR with R being methyl, ethyl, or propyl; amino bridge).
  • Non-limiting examples for a C1-C4 alkyl are methyl, ethyl, propyl, prop-2-enyl, n-butyl, 2-methylpropyl, te/f-butyl, but-3-enyl, prop-2-inyl and but-3-inyl.
  • a C1-C4 alkyi is a methyl, ethyl, propyl or butyl moiety.
  • C1-C6 alkyi similarly refers toCi-C 4 alkyls and their higher homologues, including additionally 3-methylbut-2-enyl, 2-methylbut-3-enyl, 3-methylbut-3-enyl, n-pentyl, 2-methylbutyl, 3- methylbutyl, 1 , 1-dimethylpropyl, 1 ,2-dimethylpropyl, 1 ,2-dimethylpropyl, pent-4-inyl, 3-methyl-2- pentyl, and 4-methyl-2-pentyl.
  • a C5 alkyi is a pentyl moiety and a C & alkyi is a hexyl or cyclohexyl moiety.
  • Me is methyl CH3
  • Et is ethyl -CH2CH3
  • Prop is propyl -(CH2)2CH3 (n-propyl, n-pr) or -CH(CH 3 ) 2 (iso-propyl, i-pr), but is butyl -C 4 H 9 , -(CH 2 ) 3 CH 3 , -CHCH 3 CH 2 CH 3 , -CH 2 CH(CH 3 ) 2 or - CH(CH 3 ) 3 .
  • amino-substituted alkyi or hydroxyl substituted alkyi refers to an alkyi according to the above definition that is modified by one or several amine or hydroxyl groups NH2, NHR, NR2 or OH, wherein the R substituent as used in the current paragraph, different from other uses assigned to R in the body of the specification, is methyl, ethyl or propyl unless otherwise specified.
  • An alkyi having more than one carbon may comprise more than one amine or hydroxyl.
  • substituted alkyi refers to alkyi in which each C is only substituted by one amine or hydroxyl group, in addition to bonds to the alkyi chain, terminal methyl, or hydrogen.
  • Non-limiting examples of amino-substituted alkyi include -CH2NH2, -ChkNHMe, -ChkNHEt, - CH2CH2NH2, -CH 2 CH 2 NHMe, -CH 2 CH 2 NHEt, -(CH 2 ) 3 NH 2 , -(CH 2 ) 3 NHMe, -(CH 2 ) 3 NHEt, - CH 2 CH(NH 2 )CH 3 , -CH 2 CH(NHMe)CH 3 , -CH 2 CH(NHEt)CH 3 , -(CH 2 ) 3 CH 2 NH 2 ,
  • Non-limiting examples of hydroxy-substituted alkyi include -CH2OH, -(CH2)20H, -(CH2) 3 OH, - CH 2 CH(OH)CH 3 , -(CH 2 ) OH, -CH(CH 2 OH)CH 2 CH 3 , -CH 2 CH(CH 2 OH)CH 3 ,
  • Non-limiting examples of fluoro-substituted alkyi include -CH2F, -CHF2, -CF 3 , -(CH2)2F,
  • Non-limiting examples of hydroxyl- and fluoro-substituted alkyl include -CHFCH2OH, -CF2CH2OH, -(CHF) 2 CH 2 OH, -(CF 2 ) 2 CH 2 OH, -(CHF) 3 CH 2 OH, -(CF 2 ) 3 CH 2 OH, -(CH 2 ) 3 OH, -CF 2 CH(OH)CH 3 , -CF 2 CH(OH)CF 3 , -CF(CH 2 OH)CHFCH 3 , and -CF(CH 2 OH)CHFCF 3 .
  • Ci to C 4 alkenyl or alkynyl refers to unsaturated linear carbon chains, particularly unsubstituted carbon chains, i.e. the moiety thus referred to is constituted of carbon and hydrogen atoms only. It encompasses, but is not limited to, ethenyl (-CHCH 2 ), ethynyl (-CCH) or allyl (CH- CHCH 2 ) and but-2-enyl (-CH 2 CHCHCH 3 ).
  • a first aspect of the disclosure relates to a compound characterized by a general formula (100)
  • A is selected from
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 CH 2 NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, a C 2 to C 4 alkenyl and a C 2 to C 4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C 4 alkyl, wherein
  • G is H and L is 0-R A' , S-R A' or R A' , with R A' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C 4 alkyl, or
  • G is F and L is H or Ci to C 4 alkyl; or
  • a and L are connected via a moiety -CRV and L is -O- or -CRV, wherein each R 5 is
  • R 5 2 independently being from H, F and R 1 , or R 5 2 signifies an oxygen atom connected to the C of one moiety -CR 5 - in the chain by a double bond (-CR 5 - is a carbonyl -CO-); with the proviso that R 5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and
  • A is selected from (/?) ⁇ CH ⁇ OH), ( ) ⁇ CH(NH 2 ), ( )-CH(NHR 0 ⁇ , (Sj-CH(OH), (S) ⁇ CH ⁇ NH 2 ) (S)- CH(NHR°), (R) ⁇ C(OH)R 1 , (, f ?)-C(NH2)R !
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NH R, CH2CH2F, CH s CHF 2i (CH 2 )nCF 3
  • each R 1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymeth l, 2-aminoethyl, 2-hydroxyethyl , CH 2 NHR, (CH 2 )nCH 2 F, (CH 2 ) ri CHF 2 , (CH 2 ) il CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted C ; to C 4 alky I,
  • G is H, or
  • a and L are connected via a moiety -CR 5 - and L is O, S or CR 5 2, and G is H wherein each R 5 is independently being from H, F and R 1 , or R 5 2 signifies an oxygen atom connected to the C of one moiety -CR 5 - in the chain by a double bond (-CR 5 - is a carbonyl -CO-); with the proviso that R 5 is not F on a carbon linked to a heteroatom (selected from O, N, S); (particularly wherein L is O) and
  • A is selected from ( )-CH(OH), ( )-CH(NH 2 ), ( )-CH(NHR 0 ), (Sj-CH(OH), (S)-CH(NH 2 ), (S)- CH(NHR°), ( )-C(OH)R 1 , ( )-C(NH 2 )R 1 , ( )-C(NHR°)R 1 , (Sj-C(OH)R 1 , (S)-C(NH 2 )R ⁇ and (S)-
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl.or
  • a and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I , and G is H, wherein three or four members proximal to the 4' carbon are -CRV, with one member optionally selected from -0-, -S-, -SO-, -SO2-, and -NHR 0 -, (particularly wherein L is O, and L is connected to the 5' carbon via -(CR 5 2) 4 - ),
  • each R 5 is independently being from H, F and R 1 , or R 5 2 signifies an oxygen atom connected to the C of one moiety -CR 5 - in the chain by a double bond (-CR 5 - is a carbonyl - CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR 0 -, thereby forming a lactone, thiolactone or lactame); with the proviso that R 5 is not F on a carbon linked to a heteroatom (selected from O, N, S);
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 CH 2 NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl, and wherein
  • R z is H or 2-aminoethyl
  • R w is characterized by a general formula (200) or (201)
  • R a designates the bond linking the moiety to moiety (100);
  • D is selected from NH 2 , OH, H, and NHR 4 , wherein R 4 is selected from CHO, CONH 2 , CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR 4 and R 4 is selected from CHO, CONH 2 , CONHOH, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) 4 NH 2 , or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 , and amino-substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH 2 , and
  • W is selected from OH, F, H, -0(CH 2 ) 2 NH 2 , -0(CH 2 ) 2 NH(CH 2 ) 3 NH 2 , 0-(CH 2 ) 2 -/V-morpholino, 0-(CH 2 ) 2 -/V-piperidono, 0-(CH 2 ) 2 -N-[(CH 2 ) 2 OH] 2 and a moiety characterized by formula (300) or (301) wherein R w designates the bond linking the moiety to moiety (200) or (201), or
  • R w is H and R z is characterized by a general formula (400), (401), or (402):
  • R A designates the bond linking the moiety to moiety (100)
  • T is OH or H
  • K 2 and K 6 are selected from OH and NH2, or
  • A is CH2OH or CH2NH2
  • B is NH 2
  • R z is H and R 3 is (201)
  • D is OH
  • A is CH2OH or CH2NH2
  • B is OH
  • R 3 is H and R z is any one of (400), (401), and (402)
  • - A is CH2NH2, and B is NH 2 , OH or H, and R 3 is H and R z is H;
  • A is CH2NH2
  • B is OH
  • R z is H
  • R 3 is (200)
  • D is OH
  • B is selected from NH 2 , OH, H, and NHR 2 ,
  • R 2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alkyl,
  • B is NHR 2 and R 2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 )4NH 2 , or
  • B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl;
  • Q is selected from OH, NH 2 , F and H, particularly Q is OH or H;
  • E is selected from H, CO-R 3 , CONHR 3 and CON(OH)R 3 , wherein R 3 is H or a Ci to C 6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH 2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH 2 ) 2 NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl.
  • a first sub aspect of the first aspect of the disclosure relates to a compound characterized by a general formula (100)
  • A is selected from
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH 2 CH 2 NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, a C 2 to C 4 alkenyl and
  • - G is H and L is 0-R A' , S-R A' or R A' , with R A' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C 4 alkyl, or
  • - G is F and L is H or Ci to C 4 alkyl
  • a and L together form a four-membered mono- or oligo- amino-, hydroxy- and/or fluoro- substituted alkyl or O-alkyI chain bridging the 4' and 5' carbon atoms of ring I, thereby forming a six-membered ring, wherein the 6' C in position (the 6' carbon linked to the 5' carbon of ring I) is selected from (R)- CH(OH), (ft)-CH(NH 2 ), ( )-CCHs(OH), (ft)-CCH 3 (NH 2 ); (S)-CH(OH), (S)-CH(NH 2 ); (S)-CCH 3 (OH), and (S)-CCH 3 (NH 2 ), and G is H, in other words,
  • a and L are connected via a moiety -CR 5 2 - and L is -O- or -CR 5 2 -, in other words, the 4' and 5' carbon are connected by a bridge (4'C)-L-CR 5 2 -CR 5 2 -A-(5'C),
  • each R 5 is independently being from H, F and R 1 , and
  • A is selected from ( )-CH(OH), ( )-CH(NH 2 ), ( )-CH(NHR 0 ), (Sj-CH(OH), (S)-CH(NH 2 ), (S)- CH(NHR°), ( )-C(OH)R 1 , ( )-C(NH 2 )R 1 , (ft)-C(NH R°)R ⁇ (Sj-C(OH)R 1 , (S)-C(NH 2 )R 1 , and (S)- C(NHR°)R 1 , (A and L together form a four-membered moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 CH 2 NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl, and G is H, and wherein
  • B is selected from NH 2 , OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH 2 , substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH 2 , an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH 2 NH 2 (B is glycinyl); COCH(NH 2 )(CH 2 ) 4 NH 2 (B is lysinyl), or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 (B is arginyl), more particularly wherein B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl;
  • Q is selected from OH, NH 2 , F and H, particularly Q is OH or H;
  • E is selected from H, CO-R 3 , CONHR 3 and CON(OH)R 3 , wherein R 3 is H or a Ci to C 6 substituted or unsubstituted alkyl (particularly a Ci to C 3 alkyl bearing NH 2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH 2 ) 2 NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
  • R z is H or 2-aminoethyl
  • R w is characterized by a general formula (200) or (201)
  • R a designates the bond linking the moiety to the oxygen designated OR w of moiety (100);
  • D is selected from NH 2 , OH, H, and NHR 4 , wherein R 4 is selected from CHO, CONH 2 , CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR 4 and R 4 is selected from CHO, CONH 2 , CONHOH, COCH 2 NH 2 (D is glycinyl); COCH(NH 2 )(CH 2 ) 4 NH 2 (D is lysinyl), or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 (D is arginyl), and amino-substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH 2 , and
  • W is selected from OH, F, H, -0(CH 2 ) 2 NH 2 , -0(CH 2 ) 2 NH(CH 2 ) 3 NH 2 , 0-(CH 2 ) 2 -/V-morpholino, O- (CH 2 ) 2 -/V-piperidono, 0-(CH 2 ) 2 -N-[(CH 2 ) 2 OH] 2 and a moiety characterized by formula (300) or (301)
  • R w designates the bond linking the moiety to the carbon designated W of moiety (200) or (201), or
  • R w is H and R z is characterized by a general formula (400), (401), or (402):
  • R A designates the bond linking the moiety to the oxygen designated R z of moiety (100), and T is OH or H, and K 2 and K 6 are selected from OH and NH 2, or C. or R w and R z are both H,
  • A is CH 2 OH or CH2NH2
  • B is NH 2
  • R z is H and R w is (201)
  • D is OH, or
  • A is CH2OH or CH2NH2
  • B is OH
  • R w is H and R z is any one of (400), (401), and (402)
  • A is CH2NH2
  • B is NH 2 , OH or H
  • R w is H and R z is H.
  • A is CH2OH
  • B is 2'-N-ethyl
  • R z is H
  • R w is (200)
  • D is OH
  • A is CH2NH2
  • B is OH
  • R z is H
  • R w is (200)
  • D is OH
  • Particularly preferred embodiments show a formamido or ureido moiety in position D.
  • a hydroxy ureido moiety is introduced in position D to increase H-bonding capabilities.
  • Substituted N- alkyl is possible in D also with at least one of the variations in position A or B, particularly with a six- ring formed between the 4' and 5' carbon of ring I.
  • N-alkyl modifications in D that otherwise are unchanged natural paromomycin or neomycin type ring I are disclaimed.
  • Particular embodiments include compounds characterized by the general formula (1 10), particularly
  • Particular embodiments include compounds characterized by the general formula (120), particularly (121)
  • one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH 2 ,
  • R x is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C 4 alkyl), CH 2 F, CHF 2 , and CF 3 ,
  • V is selected from H, OH, NH 2 , NHR and NHR 2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C 4 alkyl, particularly (CH 2 ) n OH, (CH 2 ) n NH 2, (CH 2 ) n F with n being 2, 3 or 4,
  • U is selected from O, S, CH 2 , SO and S0 2 , -CH(OH)- and -CH(NH 2 )- wherein B is selected from NH 2 , OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH 2 , substituted or unsubstituted Ci to ⁇ alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to C & alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH 2 , unsubstituted or amino-substituted or hydroxy-substituted Ci to C 4 alkyl, COCH 2 NH 2 (B is glycinyl); COCH(NH 2 )(CH 2 ) 4 NH 2 (B is lysinyl), or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 (B is arginyl), more particularly wherein
  • Particular embodiments include compounds described by a general formula (103), particularly by (104) or (104a)
  • Y and Y' is selected from OH, NH2 and CH2NHR 0 , and the other one is H, wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
  • W where appropriate, has the same meaning as indicated in the first aspect
  • B is NHR 2
  • R 2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R 2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO (formylamido), -CONH2 (ureido), and CO(CH2) n NH2 with n selected from 1 (glycinyl), 2 and 3, lysinyl and arginyl, and D is OH or B is NHR 2 , wherein R 2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH 2 or D is selected from NH-CHO and
  • Acetyl, propanoyi and higher acyl groups will not work in B but inclusion of amino groups in the acyl group helps to rescue the activity
  • Particular embodiments include compounds described by a general formula (105), particularly by (106) or (106a)
  • Y and Y' is selected from OH, NH2 and CH2NHR 0 , and the other one is H, wherein R° has the same meaning as indicated in claim 1 , particularly one of Y and Y' is selected from OH, NH2 and CH2NH R 0 wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and the other one of Y and Y is H or R , wherein each R independently of any other R has the meaning defined in claim 1 , particularly Y and Y' is H or R and each R independently of any other R is selected from Ci to C3 substituted or unsubstituted alkyl, more particularly one of Y and Y' is H and R is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), or a C2 to C 4 alkenyl or al
  • Q is OH
  • L is OH
  • G is H.
  • Y is selected from OH, NH2 and CH2NH R 0 and Y is H (R configuration), wherein R° has the meaning indicated above.
  • Y is H and Y' is selected from OH, NH 2 and CH 2 NHR° (S configuration), wherein R° has the meaning indicated above.
  • the compound is described by formula (106a) and a.
  • R is selected from methyl, ethyl, propyl and aminomethyl
  • Y is selected from NH 2 and OH and Y is H (R configuration), or
  • R is selected from methyl, ethyl, propyl and aminomethyl
  • Y is H and Y is selected from NH 2 and OH.
  • B is NH 2 .
  • D is OH
  • E is H.
  • E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH 2 )2NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S.3 )- 2,5-dihydroxy-4-aminopentanoyl.
  • Q is OH or H, particularly Q is OH .
  • R is methyl, Y is NH 2 and Y is H; b. R is ethyl, Y is NH 2 and Y is H; c. R is propyl, Y is NH 2 and Y' is H; d. R is aminomethyl, Y is NH 2 and Y is H; e. R is ethenyl, Y is NH 2 and Y is H; f. R is ethynyl, Y is NH 2 and Y is H; g- R is allyl, Y is NH 2 and Y is H; h. R is methyl, Y is OH and Y' is H; (156) i. R is ethyl, Y is OH and Y' is H; j- R is propyl, Y is OH and Y' is H; (142) k. R is aminomethyl, Y is OH and Y is H;
  • R is ethenyl, Y is OH and Y' is H; m .
  • R is ethynyl, Y is OH and Y' is H; n.
  • R is allyl, Y is OH and Y' is H;
  • R is methyl, Y' is NH 2 and Y is H; (166)
  • P- R is ethyl, Y' is NH 2 and Y is H; q- R 1 is propyl, Y' is NH2 and Y is H; r. R 1 is aminomethyl, Y' is NH2 and Y is H; s. R 1 is ethenyl, Y' is NH 2 and Y is H; t. R 1 is ethynyl, Y' is NH 2 and Y is H; u. R 1 is allyl. Y' is NH 2 and Y is H;
  • R 1 is methyl, Y' is OH and Y is H; (155) w. R 1 is ethyl, Y' is OH and Y is H; (189)
  • R 1 is propyl, Y is OH and Y is H; (143) y- R 1 is aminomethyl, Y is NH 2 and Y is H; z. R 1 and Y are methyl and Y is OH. (159)
  • Particular embodiments include compounds described by a general formula (102) or (102a)
  • B is NH 2l D is OH, Q is OH, R x is H, U is O, V is H, E is H and a.
  • Y is H and Y is OH (210) or b.
  • Y is OH and Y is H (21 1).
  • B is NH 2
  • D is OH
  • Q is OH
  • R x is methyl
  • U is O
  • E is H
  • V is H and c.
  • Y is H and Y is OH (125) d.
  • Y is H and Y is NH 2 (139) e.
  • Y is OH and Y is H (109) f.
  • Y is H and Y is NH 2 (150)
  • Particular embodiments are also those compounds wherein B is NHR 2 , wherein R 2 is selected from - CHO, -CONH 2 , Ci to Ce substituted or unsubstituted alkyl, particularly wherein R 2 is -CHO, -CONH 2 or an unsubstituted methyl, ethyl, or propyl.
  • D is selected from NHCHO (formamide), NHCONH2 (ureide), - NHCONHOH and NHR 4 , wherein R 4 is selected from Ci to C 4 unsubstituted alkyl and Ci to C 4 aminosubstituted alkyl.
  • D is OH
  • Particular embodiments include compounds described by a general formula (107), particularly by (108) or (108a)
  • Y is selected from OH, NH 2 and NHR 0 , wherein R° is selected from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being an unsubstituted Ci to C 4 alkyl), and B is selected from H, OH, NHCHO (formamido), NHCOCH 2 NH 2 (glycinyl), lysinyl, arginyl and NHR 2 , wherein R 2 is selected from unsubstituted, amino-substituted and/or hydroxy-substituted Ci to C 4 alkyl, or from COR 2A , wherein R 2A is an amino-substituted Ci to C 4 alkyl, particularly wherein a B is OH and Y is OH (1 18) b B is NHCH3 and Y is OH (1 15)
  • d B is NH(CH 2 ) 2 CH 3 and Y is OH (128) e.
  • B is NHCH2CH3 and Y is NH2 (172)
  • j. B is NHCOCH2NH2 and Y is NH2 (175)
  • the following compounds are similarly encompassed: a. 5"-deoxy-5"-formamidoparomomycin (137) b. 5"-deoxy-5"-ureidoparomomycin (141) c. 3',5"-dideoxy-5"-formamidoparomomycin (153)
  • Particular embodiments include the compounds:
  • a second sub aspect of the first aspect of the invention relates to a compound being characterized by a general formula (100)
  • a and L are connected via a moiety -CR 5 - and L is O, S or CR 5 2, and G is H
  • each R 5 is independently being from H, F and R 1 , or R 5 2 signifies an oxygen atom connected to the C of one moiety -CR 5 - in the chain by a double bond (-CR 5 - is a carbonyl -CO-); with the proviso that R 5 is not F on a carbon linked to a heteroatom (selected from O, N, S);
  • A is selected from ( )-CH(OH), (ft)-CH(NH 2 ), ( )-CH(NHR 0 ), (Sj-CH(OH), (S)-CH(NH 2 ), (S)- CH(NHR°), (ft)-C(OH)R ⁇ (ft)-C(NH 2 )R ⁇ (ft)-C(NHR°)R ⁇ (Sj-C(OH)R 1 , (S)-C(NH 2 )R ⁇ and (S)- C(NHR°)R 1 , (A and L together form a propylene or O-ethylene moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 CH 2 NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl.and wherein
  • B is selected from NH 2 , OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH 2 , substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to C & alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH 2 , an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 )4NH 2 , or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 ,
  • B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl;
  • Q is selected from OH, NH 2 , F and H, particularly Q is OH or H;
  • E is selected from H, CO-R 3 , CONHR 3 and CON(OH)R 3 , wherein R 3 is H or a Ci to C 6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH 2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH 2 ) 2 NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
  • R z is H or 2-aminoethyl, and R w is characterized by a general formula (200) or (201)
  • R a designates the bond linking the moiety to the oxygen designated OR w of moiety (100);
  • D is selected from NH 2 , OH, H, and NHR 4 , wherein R 4 is selected from CHO, CONH 2 , CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR 4 and R 4 is selected from CHO, CONH 2 , CONHOH, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) 4 NH 2 , or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 , and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH 2 , and
  • W is selected from OH, F, H, -0(CH 2 ) 2 NH 2 , -0(CH 2 ) 2 NH(CH 2 ) 3 NH 2 , 0-(CH 2 ) 2 -/V-morpholino, O- (CH 2 ) 2 -/V-piperidono, 0-(CH 2 ) 2 -N-[(CH 2 ) 2 OH] 2 and a moiety characterized by formula (300) or (301)
  • R w designates the bond linking the moiety to the carbon designated W of moiety (200) or (201).
  • the compound is characterized by the general formula (110), particularly (1 11)
  • the compound is characterized by the general formula (120), particularly (121)
  • the compound is described by a general formula (101'), particularly by (102') or (102a')
  • one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
  • R x is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C 4 alkyl), CH 2 F, CHF 2 , and CF 3 ,
  • U is selected from O, S, CH 2 , SO and S0 2 , -CH(OH)- and -CH(NH 2 )- wherein B is selected from N H2, OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH2, and unsubstituted Ci to C 4 alkyl, more particularly wherein B is NHR 2 , and R 2 is selected from CHO, methyl, ethyl, and propyl, and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
  • the compound is described by a general formula (103'), particularly by (104') or (104a')
  • one of Y and Y' is selected from OH, NH2 and CH2NHR 0 , and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH 2 and CH 2 NHR°,
  • has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,more particularly wherein Y is H and Y is OH,
  • B is NHR 2 , wherein R 2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R 2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), - CHO, -CONH2, and D is OH or
  • B is NHR 2 , wherein R 2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH 2 or
  • D is selected from NH-CHO and NH-CONH 2 and B is NH 2 .
  • the compound is described by a general formula (103'h), particularly by (104'h) or (104a'h)
  • Y is H and Y' is OH (203) or
  • Y is OH and Y' is H (204).
  • Y is H and Y' is selected from OH, N H2 and CH2NHR 0 , wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in in the first aspect.
  • Y' is OH .
  • B is NH 2 .
  • D is OH
  • E is H.
  • E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH 2 ) 2 NH 2 ), (2ft,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3R)- 2,5-dihydroxy-4-aminopentanoyl.
  • Q is OH or H, particularly wherein Q is OH.
  • a and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I, and G is H wherein three or four members proximal to the 4' carbon are -CR 5 2 -, with one member optionally selected from -0-, -S-, -SO-, -SO2-, and -NHR°- (particularly wherein L is O, and L is connected to the 5' carbon via -(CR 5 2 ) 4 - ),
  • each R 5 is independently being from H, F and R 1 , or R 5 2 signifies an oxygen atom connected to the C of one moiety -CR 5 - in the chain by a double bond (-CR 5 - is a carbonyl -CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR 0 -, thereby forming a lactone, thiolactone or lactame);
  • the member positioned proximal to the 5' carbon of ring I A is selected from (f?)-CH(OH), (R)- CH(NH 2 ), ( )-CH(NHR 0 ), (Sj-CH(OH), (S)-CH(NH 2 ), (S)-CH(NHR 0 ), ( )-C(OH)R 1 , (ft)-C(NH 2 )R 1 , ( )-C(NHR°)R 1 , (Sj-C(OH)R 1 , (S)-C(NH 2 )R 1 , and (S)-C(NHR°)R 1 ,
  • is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl,
  • each R 1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl, and wherein
  • B is selected from NH 2 , OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to ⁇ alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH 2 , an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) NH 2 , or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 ,
  • B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl;
  • Q is selected from OH, NH 2 , F and H, particularly Q is OH or H;
  • E is selected from H, CO-R 3 , CONHR 3 and CON(OH)R 3 , wherein R 3 is H or a Ci to C 6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH 2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH 2 ) 2 NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
  • R z is H or 2-aminoethyl, and R w is characterized by a general formula (200) or (201)
  • R a designates the bond linking the moiety to the oxygen designated OR" of moiety (100);
  • D is selected from NH 2 , OH, H, and NHR 4 , wherein R 4 is selected from CHO, CONH 2 , CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR 4 and R 4 is selected from CHO, CONH 2 , CONHOH, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) 4 NH 2 , or COCH(N H 2 )(CH 2 ) 3 NHC(NH)NH 2 , and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH 2 , and
  • W is selected from OH, F, H, -0(CH 2 ) 2 NH 2 , -0(CH 2 ) 2 NH(CH 2 ) 3 NH 2 , 0-(CH 2 ) 2 -/V-morpholino, O- (CH 2 ) 2 -/V-piperidono, 0-(CH 2 ) 2 -N-[(CH 2 ) 2 OH] 2 and a moiety characterized by formula (300) or (301) wherein R w designates the bond linking the moiety to the carbon designated W of moiety (200) (201).
  • the compound is described by a general formula (101"), particularly by (102") or (102a")
  • one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
  • R x is selected from H, methyl, ethyl, aminomethyl, hydroxym ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C 4 alkyl), CH 2 F, CHF 2 , and CF 3 ,
  • V and V independently are selected from H, OH, NH 2 , NHR and NHR 2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C 4 alkyl, particularly (CH 2 ) n OH, (CH 2 ) n NH 2i (CH 2 ) n F with n being 2, 3 or 4,
  • U is selected from O, S, CH 2 , SO and S0 2 , -CH(OH)- and -CH(NH 2 )- wherein B is selected from NH2, OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alky I,
  • B is NHR 2 and R 2 is -CHO, -CONH2, and unsubstituted Ci to C 4 alkyl, more particularly wherein B is NHR 2 , and R 2 is selected from CHO, methyl, ethyl, and propyl,
  • the compound is described by a general formula (103"), particularly by (104") or (104a")
  • Y and Y' is selected from OH, NH2 and CH2NHR 0 , and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH2 and CH2NHR 0 , wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
  • B is NHR 2 , wherein R 2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R 2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO, -CONH 2 , and D is OH or
  • B is NHR 2 , wherein R 2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH 2 or
  • - D is selected from NH-CHO and NH-CONH 2 and B is NH 2 .
  • the compound is described by a general formula (103"h), particularly by (104"h) or (104a"h)
  • B is NH 2 .
  • D is OH, E is H and
  • Y is H and Y' is OH (196) or b.
  • Y is OH and Y " is H (199),
  • Y is H and Y' is selected from OH, NH2 and CH2NHR 0 , wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and
  • Y' is OH
  • B is NH 2 .
  • D is OH
  • E is H.
  • E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl.
  • Q is OH or H, particularly wherein Q is OH.
  • Particular embodiments relate to the use of a compound according to any of the previously described aspects, sub aspects and embodiments, or combinations of particular features, in the therapy of bacterial infection by systemic administration.
  • a compound according to any of the previously described aspects, sub aspects and embodiments, or combinations of particular features in the therapy of bacterial infection by systemic administration.
  • the skilled artisan is aware that on the basis of the data provided and the general description, certain compounds can be identified that show advantageous selectivity for the bacterial, rather than the eukaryotic mitochondrial, ribosome.
  • Particular embodiments having a favorable selectivity comprise a hydroxyl moiety linked to the 6' carbon (position A), particularly wherein the 6' C is in (S) configuration.
  • the compound for use in the therapy of bacterial infection is administered by systemic administration in a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U. Patients carrying these mutations are at particular jeopardy of suffering hearing loss and other permanent side-effects of AGA administration.
  • Particular embodiments relate to the use of a compound according to any of the previous aspects or embodiments in the therapy of bacterial infection, particularly by systemic administration. Certain particular embodiments relate to its use in infections caused by the so-called ESKAPE group of bacterial pathogens (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa and Enterobacter species)( see Boucher et al. Clinical Infectious Diseases. 48 (1): 1-12; Renner et al. Appl Environ Microbiol.
  • ESKAPE group of bacterial pathogens Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa and Enterobacter species
  • the infection is caused by a pathogen selected from the genera Klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli), Mycobacterium, Pseudomonas (particularly P. aeroginosa), Acinetobacter (particularly A. baumannii), Enterobacter (particularly E. cloacae), and Neisseria (particularly N. gonorrhoeae).
  • a pathogen selected from the genera Klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli), Mycobacterium, Pseudomonas (particularly P. aeroginosa), Acinetobacter (particularly A. baumannii), Enterobacter (particularly E. cloacae), and Neisseria (particularly N. gonorrhoeae).
  • Another aspect relates to the use of a compound according to any of the aspects or embodiments disclosed herein, in the therapy of bacterial infection, wherein the infection is caused by a pathogen comprising a resistance determinant selected from AAC(6') aminoglycoside /V-acetyltransferase, AAC(2') aminoglycoside /V-acetyltransferase, APH(3') aminoglycoside O-phosphotransferase and ANT(4') aminoglycoside O-nucleotidyltransferase.
  • a pathogen comprising a resistance determinant selected from AAC(6') aminoglycoside /V-acetyltransferase, AAC(2') aminoglycoside /V-acetyltransferase, APH(3') aminoglycoside O-phosphotransferase and ANT(4') aminoglycoside O-nucleo
  • Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen selected from the genus Mycobacterium, particularly by systemic administration.
  • Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen comprising an AAC(2') aminoglycoside /V-acetyltransferase resistance determinant.
  • Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, wherein B is selected from H, OH, NR 2 , and NHR 2 and R 2 is -CHO, -CONH 2 , an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, particularly wherein B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl; for use in the therapy of infection by a bacterium, wherein the bacterium comprises an AAC(2') aminoglycoside /V-acetyltransferase resistance determinant and/or the infection is caused by a pathogen selected from the genus Mycobacterium.
  • Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of infection by a bacterium, wherein the bacterium comprises a resistance determinant selected from
  • the compound is defined by a general formula (101), (102) or (102a), wherein Y' is selected from OH, NH2 and NHR 0 , wherein R° is selected from the group consisting of methyl, ethyl, 2- aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH 2 CH 2 F, CH 2 CHF 2 , (CH 2 ) n CF 3 , and particularly wherein Y' is OH, more particularly wherein V is H, U is O and Y' is H, even more particularly for use by systemic administration.
  • the resistance determinant is selected from the following table:
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the compound is characterized by a general formula (100)
  • A is CH 2 OH or CR 1 2 OH, or ( )-CH(OH)R 1 or (Sj-CH(OH)R 1 , wherein
  • each R 1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH 2 NHR, (CH 2 ) n CH 2 F, (CH 2 ) n CHF 2 , (CH 2 ) n CF 3 , wherein n is 1 or 2, a C 2 to C 4 alkenyl and a C 2 to C 4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C 4 alkyl, wherein
  • G is H and L is 0-R A' , S-R A' or R A' , with R A' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C 4 alkyl, or
  • G is F and L is H or Ci to C 4 alkyl; or
  • - A and L are connected via a moiety -CRV and L is -O- or -CRV,
  • each R 5 is independently being from H, F and R 1 , and
  • A is (Sj-CH(OH), or (Sj-C(OH)R 1
  • each R 1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2) n CH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C 4 alkyl, and G is H,
  • B is selected from NH 2 , OH, H, and NHR 2 , wherein R 2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR 2A , wherein R 2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR 2 and R 2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) 4 NH 2 , or COCH(NH 2 )(CH 2 )3NHC(NH)NH 2 ,
  • B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl;
  • Q is selected from OH, NH2, F and H, particularly Q is OH or H;
  • E is selected from H, CO-R 3 , CONHR 3 and CON(OH)R 3 , wherein R 3 is H or a Ci to C 6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH 2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH 2 ) 2 NH 2 ), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl,
  • R z is H or 2-aminoethyl, and R w is characterized by a general formula (200) or (201)
  • R w designates the bond linking the moiety to moiety (100);
  • D is selected from NH 2 , OH, H, and NHR 4 , wherein R 4 is selected from CHO, CONH 2 , CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR 4 and R 4 is selected from CHO, CONH 2 , CONHOH, COCH 2 NH 2 ; COCH(NH 2 )(CH 2 ) 4 NH 2 , or COCH(NH 2 )(CH 2 ) 3 NHC(NH)NH 2 , and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH 2 , and
  • W is selected from OH, F, H, -0(CH 2 ) 2 NH 2 , -0(CH 2 ) 2 NH(CH 2 ) 3 NH 2 , 0-(CH 2 ) 2 -/V-morpholino, O- (CH 2 ) 2 -/V-piperidono, 0-(CH 2 ) 2 -N-[(CH 2 ) 2 OH] 2 and a moiety characterized by formula (300) or (301)
  • R w designates the bond linking the moiety to moiety (200) or (201),
  • A is CH 2 OH or CH 2 NH 2
  • B is NH 2
  • R z is H and FT is (201)
  • D is OH, or
  • - A is CH 2 NH 2
  • B is NH 2 , OH or H, and R w is H and R z is H;
  • A is CH 2 NH 2
  • B is OH
  • R z is H
  • R w is (200)
  • D is OH.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein B is NHR 2 and R 2 is -CHO, methyl, ethyl, or propyl.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration according to claim 40 or 41 , wherein A is CR 1 2 OH or (Sj-CH(OH)R 1 , and each R 1 is selected independently from the group consisting of methyl and ethyl.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein Q is H, and
  • A is selected from CH 2 OH, CR 1 2 OH, and (Sj-CH(OH)R 1 , wherein R 1 is selected from the group consisting of methyl, ethyl, -CH 2 NH 2 , -CH 2 OH, 2-aminoethyl, and 2- hydroxyethyl, and G is H and L is 0-R A' , S-R A' or R A , with R A being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C 4 alkyl, or G is F and L is H or Ci to C 4 alkyl; or
  • a and L are connected via a moiety -CR 5 2 - and L is -O- or -CR 5 2 -, wherein each R 5 is independently being from H, F and R 1 , and A is (Sj-CH(OH), or (Sj-C(OH)R 1 wherein R 1 is selected from the group consisting of methyl, ethyl, -CH2NH2, -CH2OH, 2- aminoethyl, and 2-hydroxyethyl, and G is H.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein D is NCHO.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the compound is provided for administration to a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U.
  • Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the infection is caused by a pathogen selected from the genera klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli, Mycobacterium,
  • Pseudomonas particularly P. aeroginosa
  • Acinetobacter particularly A. baumannii
  • Enterobacter particularly E. cloacae
  • Neisseria particularly N. gonorrhoeae
  • Alkylation of N2' in paromomycin (1 15, 127, 128) further results in increased selectivity for the bacterial ribosome over the A1555G mutant mitochondrial and cytosolic ribosomes, predictive of reduced ototoxicity and systemic toxicity.
  • alkylation of N2' in neomycin B (171 , 172) results in increased selectivity for the bacterial ribosome over the mitochondrial (wild type and A1555G mutant) and cytosolic ribosomes, again predictive of reduced ototoxicity and systemic toxicity.
  • the 2'-N-alkyl modification of neomycin and of paromomycin and other neosamine based AGA are suitable modifications to the parents enabling the reduction of toxicity and surmounting the effect of the AAC(2') resistance determinant. These modifications are suitable for use either alone or in combination with other tolerated aminoglycoside modifications designed to surmount other resistance mechanisms and/or reduce toxicity.
  • a dosage form for the prevention or treatment of bacterial infection comprising an aminoglucoside antibacterial drug according to one of the above aspects of the embodiments.
  • Dosage forms may be for enteral administration, such as nasal, buccal, rectal, transdermal or oral administration, or as an inhalation form or suppository.
  • parenteral administration may be used, such as subcutaneous, intravenous, intrahepatic or intramuscular injection forms.
  • a pharmaceutically acceptable carrier and/or excipient may be present.
  • Topical administration is also within the scope of the advantageous uses of the compounds.
  • the skilled artisan is aware of a broad range of possible recipes for providing topical formulations, as exemplified by the content of Benson and Watkinson (Eds.), Topical and Transdermal Drug Delivery: Principles and Practice (1st Edition, Wiley 201 1 , ISBN-13: 978-0470450291); and Guy and Handcraft: Transdermal Drug Delivery Systems: Revised and Expanded (2 nd Ed., CRC Press 2002, ISBN-13: 978-0824708610); Osborne and Amann (Eds.): Topical Drug Delivery Formulations (1 st Ed. CRC Press 1989; ISBN-13: 978-0824781835).
  • Fig. 1 and 2 show the synthesis of exemplary compounds disclosed herein, modified in position D.
  • Fig. 3, 4 and 5 show the synthesis of exemplary compounds disclosed herein, modified in position B.
  • Fig. 6 show the synthesis of exemplary compounds disclosed herein, modified in position A, G and L.
  • MIC minimal inhibitory concentrations
  • CLSI broth microdilution assays
  • IC50 values for bacterial, human chimeric, and rabbit reticulocyte ribosomes have been determined by in-vitro translation assays as described previously (Proc. Nat. Ac. Sci USA 2012, 109(27): 10984-10989).
  • Example 1 Modification of the 5" OH of paromomycin or neomycin (position D).
  • Particular embodiments encompass the compounds N, O and P of Fig. 1 and their use as an intermediate of an aminoglycoside drug derivative.
  • Particular embodiments encompass the compounds BB, BC, BD, BE, BF, BG, BH, Bl and BJ (see Fig. 2) and their use as an intermediate of an aminoglycoside drug derivative.
  • Compound 165 is shown as a comparative example.
  • the inventors demonstrate that combined substitutions at both C3' and C5" provides full protection against all relevant isoforms of APH(3').
  • a novel 5"-deoxy-5"-formamido substitution is described which retains full antibacterial activity when compared to the parent compound.
  • Target specificity for the bacterial versus the human cytosolic decoding site is increased for some modifications.
  • Position D Activity Against Wild Type Isolates (MIC50 g/ml)
  • Neomycin OH OH 1 64 64 > 64 32-64 0.04 4.3 35
  • Ribostamycin OH OH 2 > 64 > 64 32-64 > 64 0.09 443 484
  • Example 2 Modification of ring I in C4' and 5' by a six-ring system or by alkylation in C6' (position A). Target specificity for the bacterial versus the human cytosolic decoding site is increased for some modifications.
  • icular embodiments encompass the compounds A, C, D, E, F and G of the preceding scheme and their use as an intermediate of an aminoglycoside drug derivative.
  • the residue was dissolved in 0.002 M aqueous AcOH (2.0 ml_) and then charged to a Sephadex column (CM Sephadex C-25, 5.0 g).
  • the Sephadex column was eluted with deionized water (50 ml_), 0.5% aqueous NH40H (40 ml_), and 1.5% NH40H (40 ml_).
  • the product-containing fractions were combined and evaporated to give the product in the form of the free base, which was taken up in H20 (2 ml_) and treated with glacial acetic acid (10 eq). The resulting solution was lyophilized to give the product in the form of the acetate salt.
  • Particular embodiments encompass the compounds H, I, J, K and L (both stereoisomers) of the preceding scheme and their use as an intermediate of an aminoglycoside drug derivative.
  • Particular embodiments encompass the compound S of Fig. 3 and its use as an intermediate of an aminoglycoside drug derivative.
  • Particular embodiments encompass the compound V of the preceding scheme and its use as an intermediate of an aminoglycoside drug derivative.
  • Particular embodiments encompass the compounds AB and AC of Fig. 4 and their use as an intermediate of an aminoglycoside drug derivative.
  • neomycin sulfate 10 g, 14.04 mmol
  • water 100 mL
  • cone aqueous NH 4 OH 50 mL
  • the solid was taken up in a mixture of water and methanol (3: 1 , 120 mL) and treated with 1 N HCI (14 mL) at RT before acetic anhydride (150 mL) was added dropwise over a period of 6 h followed by stirring for 24 h.
  • Particular embodiments encompass the compounds AE, AF, AG and AH of Fig. 5 and their use as an intermediate of an aminoglycoside drug derivative.
  • neomycin sulfate 10 g, 14.04 mmol
  • water 100 mL
  • cone aqueous NH 4 OH 50 mL
  • This solid was taken up in a mixture of water and methanol (3: 1 , 120 mL) and treated with 1 N HCI (14 mL) at RT before acetic anhydride (150 mL) was added dropwise over a period of 6 h and stirring was continued for additional 24 h.
  • Modifications at C2' result in enhanced potency against Mycobacteria, as well as full protection against acquired AAC(2') antimicrobial resistance in gram-negatives. Furthermore, various modifications at the 2' position are demonstrated to retain the full antibacterial potency of the parent compound while increasing target specificity for bacterial versus human rRNA, a surrogate for increased drug safety.
  • Neomycin B 0.25 128 128 0.5-1 4 1 1
  • Neomycin B 0.25-0.5 0.5-1 8
  • Modifications at C2' result in enhanced potency against Mycobacteria, as well as full protection against acquired AAC(2') antimicrobial resistance in gram-negatives. Furthermore, various modifications at the 2' position are demonstrated to retain the full antibacterial potency of the parent compound while increasing target specificity for bacterial versus human rRNA, a surrogate for increased drug safety.
  • Table 5 (Example 3) antibacterial activity of 2'-modified compounds against E. coli strains with acquired AAC(2') resistance and Mycobacteria with intrinsic AAC(2') resistance (MIC in ⁇ g/ml)
  • NEO 0.5- 8 > 64 0.25-0.5 16 4 16 1 0.5
  • PAP paromomycin
  • NEO neomycin B
  • RIB ribostamycin
  • GEN gentamicin, for comparison only
  • PLZ plazomicin, for comparison only
  • NEO 1 128 64 > 64 32-64 1 > 64 64
  • RIB 2 > 128 128-256 32-64 > 128 4 > 128 > 128
  • PAR paromomycin
  • LIV lividomycin B
  • NEO neomycin B
  • RIB ribostamycin
  • PAR paromomycin
  • LIV lividomycin B
  • NEO neomycin B
  • RIB ribostamycin
  • MRSA methicillin resistant Staphylococcus aureus
  • P. aer. Pseudomonas aeruginosa
  • PAR paromomycin
  • LIV lividomycin B
  • NEO neomycin B
  • RIB ribostamycin
  • Bacterial Mycobacterium smegmatis ribosomes
  • Mitochondrial/Cytosolic ribosomes with a human mitochondrial/cytosolic decoding site, respectively [Ref]
  • Rabbit mammalian cytosolic ribosomes with a decoding site identical to human cytosolic ribosomes
  • A1555G human mitochondrial decoding site with a single point mutation causing hypersusceptibility to aminoglycoside antibiotics.
  • each embodiment disclosed herein can comprise, consist essentially of, or consist of its particular stated element, step, ingredient or component.
  • the terms “include” or “including” should be interpreted to recite: “comprise, consist of, or consist essentially of.”
  • the transition term “comprise” or “comprises” means includes, but is not limited to, and allows for the inclusion of unspecified elements, steps, ingredients, or components, even in major amounts.
  • the transitional phrase “consisting of” excludes any element, step, ingredient or component not specified.
  • the transition phrase “consisting essentially of” limits the scope of the embodiment to the specified elements, steps, ingredients or components and to those that do not materially affect the embodiment.
  • a material effect would cause a statistically significant reduction in the antibacterial activity of the compounds disclosed herein.

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Abstract

The present disclosure relates to derivatives of neamine-based aminoglycoside antibacterial drugs modified in position C6', C2' and/or C5''. The modifications impart favorable properties regarding activity against ESKAPE pathogens, evasion of resistance traits and increased selectivity, enabling systemic use of the compounds.

Description

NEOMYCIN AND PAROMOMYCIN DERIVATIVES
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims priority to European Patent Application No. EP17165620.0 filed on April 7, 2017, European Patent Application No. EP17165623.4 filed on April 7, 2017, European Patent Application No. EP17165612.7 filed on April 7, 2017, U.S. Provisional Patent Application No. 62/501 ,535 filed on May 4, 2017, U.S. Provisional Patent Application No. 62/501 ,586 filed on May 4, 2017, and U.S. Provisional Patent Application No. 62/501 ,589 filed on May 4, 2017, the entire contents of each of which are incorporated by reference herein in their entirety.
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT
This invention was made with government support under grant 1 R01A1123352-01 awarded by the National Institutes of Health. The government has certain rights in the invention.
FIELD OF THE DISCLOSURE
Provided are aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties. The present disclosure further relates to use of the compounds in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
BACKGROUND
Aminoglycoside antibiotics are among the most potent and successful antibacterial therapeutics in medical history. The emergence and widespread dissemination of antimicrobial resistance poses a global health threat of continuously increasing magnitude. Two mechanisms account for the resistance to aminoglycoside antibiotics: methylation of N7-G1405 in the 16S-rRNA binding site, and inactivation of the drug by aminoglycoside modifying enzymes. The development of next-generation aminoglycoside antibiotics will therefore need to rely on 4,5-disubstituted deoxystreptamines, which retain binding to and activity against G1405-methylated ribosomes. Furthermore, next-generation aminoglycoside antibiotics need to be designed to circumvent the clinically most relevant aminoglycoside-modifying enzymes without compromising antibacterial potency or drug safety.
Important examples are paromomycin (PAR) and Neomycin B (NEO_B). These consist of four rings, the numbering of which is given below for reference.
Figure imgf000003_0001
PAR (X=OH), NEO_B (X=NH2) NEO_A
Two classes of AGA are distinguished by the connection of carbocycles to the deoxystreptamine moiety (ring II): paromomycin and neomycin are the examples of the (4,5) class, other related compounds include the (4,5) AGA lividomycin (LIV) and ribostamycin (RI B). Xylostacin (XYL, CAS number 50474-67-4) is the 3"-isomer of ribostamycin.
Kanamycin (KAN; Kanamycin A: K2 = OH, K6 = NH2; Kanamycin B: : , K6 = NH2; Kanamycin C: K2 = NH2, K6 = OH, Tobramycin: 3"-deoxy), geneticin (GEN ; A=(R) CH(OH)CH3) and amikacine (AM I) are examples of the (4,6) AGA class.
Figure imgf000003_0002
(XYL)
Figure imgf000004_0001
Figure imgf000004_0002
KAN
Many AGA drug candidates based on the above scaffolds have been developed over more than 50 years, and a vast number of synthetic approaches are known to the skilled artisan. A comprehensive review of modern aminoglycoside chemistry, particularly as it pertains to the compounds disclosed herein, is available in Wang and Chang, Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery, 2nd Ed. (Editor: D. Arya), Wley 2007.
The most important mechanism by which bacteria evade the action of existing AGAs is by the action of aminoglycoside modifying enzymes (AMEs) on the drug. While AMEs vary between different bacteria, only a limited number of positions on the AGA framework are modified across the complete spectrum of bacteria.
One of the more widespread classes of AME is the class of 3'-aminoglycoside phosphotransferases APH(3') whose various isoforms phosphorylate at the AGA 3'-position (ring I) in an ATP- dependent manner. APH(3') has been found in a large variety of pathogens including E. coli, S. enterica, K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium, Photobacterium, Citrobacter, P. aeruginosa, S. maltophilia, S. aureus, Enterococcus, B. circulans, C. jejuni, and others (reviewed in
Drug Resistance Updates 13: 151 and other reports). Importantly, P. aeruginosa has a chromosomal APH(3') gene that makes it intrinsically resistant to most aminoglycoside antibiotics.
Modification of the AGAs by deoxygenation at the 3'- position, as in tobramycin and lividomycin, overcomes resistance due to 3'-phosphorylation by APH(3'). However, numerous isoforms of the APH(3') have the ability also to phosphorylate at the 5"-position (ring III) of the 4,5-AGA, making them formally APH(3',5") AMEs. Thus, for example, APH(3')-llla AME phosphorylates the 3'-deoxy 4,5-AGA lividomycin at the 5"-position leading to resistance in bacteria that carry this AME. Indeed, the present inventors have determined that certain APH(3',5") isoforms are more effective at phosphorylation of the 5"-position than of the 3'- position. Attempts to circumvent the ability of APH(3',5") AMEs to phosphorylate at the 5"-position described in the literature have involved the removal of the 5"-hydroxy group by deoxygenation and its replacement by halogen atoms, but these modifications result in a substantial loss of antibacterial activity. Modifications involving oxidation of the 5" -alcohol to the corresponding aldehyde or carboxylic acid followed by the formation of oximes or amides also result in the loss of antibacterial activity. The replacement of the 5"-hydroxy group by an amino group gives compounds that retain the antibiotic activity of the parent, in manner dependent on the amine substituent, but which, because of the presence of additional basic amino group, lead to enhanced binding to eukaryotic ribosomes which reduces the therapeutic index as a consequence of increased toxicity.
The AAC(2') class of AMEs promote bacterial resistance by acetylation of the 2'-amino group of the AGAs giving the 2'-acetamido derivatives, which have lower affinity for the bacterial ribosome. Accordingly, an authentic sample of the 2'-N-acetamide of neomycin B (compound 183 of the present specification) has very significantly reduced activity against MRSA and E coli (see Tables 1 and 2 of example 3) as compared to the parent neomycin B. The action of AAC(2') may be blocked by removal of the 2'-amino group, by replacement of the 2'-amino group by a hydroxyl group or by a halogen atom, by alkylation of the 2'-amino group, or by acylation of the 2'-amino group with an acyl residue different from the acetyl group installed by the enzyme. However, the influence of such modifications on antibacterial activity and ribosomal activity (hence on ototoxicity) is not entirely predictable.
The AAC(2') resistance mechanism has been described for various gram-negative clinical pathogens; one aspect of clinical relevance is its occurrence as inherent resistance mechanism encoded on the chromosomes of Mycobacteria (see Drug Resistance Updates 13: 151).
It has been demonstrated, on the basis of genetic studies of aminoglycoside interactions with eukaryotic ribosomal 12S rRNA, that AGAs inhibit mitochondrial protein synthesis which enhances the cochlear toxicity associated with aminoglycosides. Crystallographic analyses of rRNA hybrids of human wild-type, the human 12S rRNA A1555G mutant, and bacterial decoding A-sites, strongly support the hypothesis that AGA induced deafness is affected by genetic factors. Ototoxicity occurs in ways including: i) a random dose dependent manner in the common patient population, and ii) in an aggravated type in genetically susceptible individuals, with the latter linked to mutations in mitochondrial rRNA, in particular, the transition mutations A1555G and C1494U in the A-site of the mitochondrial ribosomal RNA subunit.
It is known that the 2'-N-ethyl derivative of paromomcyin (127) and the 2'-hydroxy-2'-deamino derivative of neomycin B (119) show comparable antibiotic potency to the parent compounds (Casinelli et al., J Antibiotics 1978, 31 , 378 and ibid., 382). However, neither the effect on antibiotic activity of 2'-N-alkylation in neomycin B nor that of replacement of the 2'-amino group by a hydroxyl group in paromomycin was known previously.
Deamination in the 4,6-class of aminoglycosides has been shown to result in the formation of compounds that retain most of the antibacterial activity of the parent compounds, but the effect of such modifications on toxicity was not described. Moreover, as the present inventors have shown elsewhere (Salian et al., Antimicrob. Agents Chemother. 2012, 56, 6104; Kato et al., ACS Infect. Dis. 2015, 1 , 479), modifications to ring I of the 2-deoxystreptamine class of aminoglycosides do not have the same influence in the 4,5-series as in the 4,6-series.
2'-N-Formylation is known to be an acceptable (natural) modification of the 4,6-aminoglycoside sisomicin. It is not known as an acceptable modification in the 4,5-series.
SUMMARY
Provided are aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties. The disclosure further relates to use of the compounds of the disclosure in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
Based on the above-mentioned state of the art, the objective of the present disclosure is to provide improved aminoglycoside derivatives that allow treatment of infections by pathogens carrying resistance determinants, and which are show less ototoxicity and nephrotoxicity in human patients. This objective is attained by the claims of the present specification.
Most literature work on the deaminated aminoglycosides was conducted on the only modestly active pseudodisaccharide neamine and is of questionable relevance to the considerably more active pseudotetrasaccharides paromomycin and neomycin B. Indeed, as the data reveal, conclusions drawn on the effect of 2'-deamination on neamine microbiology and susceptibility to resistance mechanism by Mobashery (JACS 1995, 1 17, 11060) do not extrapolate to neomycin B or to paromomycin.
One aspect of the present disclosure teaches that forcing the ring I 6' carbon into a particular conformation or set of conformations, which increase affinity for the ribosome and increase antibacterial activity. In addition, these novel modifications of the AGA ring I overcome the action of at least two common aminoglycoside modifying enzymes and so, in addition to increased activity against wild-type bacteria, afford the possibility of use against resistant bacteria endowed with those AMEs.
BRIEF DESCRIPTION OF THE DRAWINGS
FIGs. 1-18 depict chemical formulas described herein.
DETAILED DESCRIPTION
Provided are aminoglycoside compounds based on the neomycin scaffold having improved antibacterial properties. The disclosure further relates to use of the compounds of the disclosure in the treatment of infections by pathogens carrying certain resistance genes rendering such pathogens refractive to classical aminoglycoside antibacterial drugs.
Based on the above-mentioned state of the art, the objective of the present disclosure is to provide improved aminoglycoside derivatives that allow treatment of infections by pathogens carrying resistance determinants, and which are show less ototoxicity and nephrotoxicity in human patients. This objective is attained by the claims of the present specification.
Most literature work on the deaminated aminoglycosides was conducted on the only modestly active pseudodisaccharide neamine and is of questionable relevance to the considerably more active pseudotetrasaccharides paromomycin and neomycin B. Indeed, as the data reveal, conclusions drawn on the effect of 2'-deamination on neamine microbiology and susceptibility to resistance mechanism by Mobashery (JACS 1995, 1 17, 11060) do not extrapolate to neomycin B or to paromomycin.
One aspect of the present disclosure teaches that forcing the ring I 6' carbon into a particular conformation or set of conformations, which increase affinity for the ribosome and increase antibacterial activity. In addition, these novel modifications of the AGA ring I overcome the action of at least two common aminoglycoside modifying enzymes and so, in addition to increased activity against wild-type bacteria, afford the possibility of use against resistant bacteria endowed with those AMEs.
Terms and definitions.
A C1-C4 alkyl in the context of the present disclosure signifies a saturated linear or branched hydrocarbon having 1 , 2, 3 or 4 carbon atoms, wherein in particular embodiments one carbon- carbon bond may be unsaturated and one CH2 moiety may be exchanged for oxygen (ether bridge) or nitrogen (NH, or NR with R being methyl, ethyl, or propyl; amino bridge). Non-limiting examples for a C1-C4 alkyl are methyl, ethyl, propyl, prop-2-enyl, n-butyl, 2-methylpropyl, te/f-butyl, but-3-enyl, prop-2-inyl and but-3-inyl. In particular embodiments, a C1-C4 alkyi is a methyl, ethyl, propyl or butyl moiety.
The term C1-C6 alkyi similarly refers toCi-C4 alkyls and their higher homologues, including additionally 3-methylbut-2-enyl, 2-methylbut-3-enyl, 3-methylbut-3-enyl, n-pentyl, 2-methylbutyl, 3- methylbutyl, 1 , 1-dimethylpropyl, 1 ,2-dimethylpropyl, 1 ,2-dimethylpropyl, pent-4-inyl, 3-methyl-2- pentyl, and 4-methyl-2-pentyl. In particular embodiments, a C5 alkyi is a pentyl moiety and a C& alkyi is a hexyl or cyclohexyl moiety.
Where used in the context of chemical formulae, the following abbreviations may be used: Me is methyl CH3, Et is ethyl -CH2CH3, Prop is propyl -(CH2)2CH3 (n-propyl, n-pr) or -CH(CH3)2 (iso-propyl, i-pr), but is butyl -C4H9, -(CH2)3CH3, -CHCH3CH2CH3, -CH2CH(CH3)2 or - CH(CH3)3.
The term amino-substituted alkyi or hydroxyl substituted alkyi refers to an alkyi according to the above definition that is modified by one or several amine or hydroxyl groups NH2, NHR, NR2 or OH, wherein the R substituent as used in the current paragraph, different from other uses assigned to R in the body of the specification, is methyl, ethyl or propyl unless otherwise specified. An alkyi having more than one carbon may comprise more than one amine or hydroxyl. Unless otherwise specified, the term "substituted alkyi" refers to alkyi in which each C is only substituted by one amine or hydroxyl group, in addition to bonds to the alkyi chain, terminal methyl, or hydrogen.
Non-limiting examples of amino-substituted alkyi include -CH2NH2, -ChkNHMe, -ChkNHEt, - CH2CH2NH2, -CH2CH2NHMe, -CH2CH2NHEt, -(CH2)3NH2, -(CH2)3NHMe, -(CH2)3NHEt, - CH2CH(NH2)CH3, -CH2CH(NHMe)CH3, -CH2CH(NHEt)CH3, -(CH2)3CH2NH2,
-(CH2)3CH2NHMe, -(CH2)3CH2NHEt, -CH(CH2NH2)CH2CH3, -CH(CH2NHMe)CH2CH3, -CH(CH2NHEt)CH2CH3, -CH2CH(CH2NH2)CH3, -CH2CH(CH2NHMe)CH3,
-CH2CH(CH2NHEt)CH3, -CH(NH2)(CH2)2NH2, -CH(NHMe)(CH2)2NHMe, -CH(NHEt)(CH2)2NHEt, -CH2CH(NH2)CH2NH2, -CH2CH(NHMe)CH2NHMe,
-CH2CH(NHEt)CH2NHEt, -CH2CH(NH2)(CH2)2NH2, -CH2CH(NHMe)(CH2)2NHMe,
-CH2CH(NHEt)(CH2)2NHEt, -CH2CH(CH2NH2)2, -CH2CH(CH2NHMe)2 and
-CH2CH(CH2NHEt)2.
Non-limiting examples of hydroxy-substituted alkyi include -CH2OH, -(CH2)20H, -(CH2)3OH, - CH2CH(OH)CH3, -(CH2) OH, -CH(CH2OH)CH2CH3, -CH2CH(CH2OH)CH3,
-CH(OH)(CH2)2OH, -CH2CH(OH)CH2OH, -CH2CH(OH)(CH2)2OH and -CH2CH(CH2OH)2.
Non-limiting examples of fluoro-substituted alkyi include -CH2F, -CHF2, -CF3, -(CH2)2F,
-(CHF)2H, -(CHF)2F, -C2F5, -(CH2)3F, -(CHF)3H, -(CHF)3F, -C3F7, -(CH2) F, -(CHF)4H, -(CHF)4F and -C4F9. Non-limiting examples of hydroxyl- and fluoro-substituted alkyl include -CHFCH2OH, -CF2CH2OH, -(CHF)2CH2OH, -(CF2)2CH2OH, -(CHF)3CH2OH, -(CF2)3CH2OH, -(CH2)3OH, -CF2CH(OH)CH3, -CF2CH(OH)CF3, -CF(CH2OH)CHFCH3, and -CF(CH2OH)CHFCF3.
The term "Ci to C4 alkenyl or alkynyl" refers to unsaturated linear carbon chains, particularly unsubstituted carbon chains, i.e. the moiety thus referred to is constituted of carbon and hydrogen atoms only. It encompasses, but is not limited to, ethenyl (-CHCH2), ethynyl (-CCH) or allyl (CH- CHCH2) and but-2-enyl (-CH2CHCHCH3).
Unless explicitly stated otherwise, the following letters, when contained as capital lettering in a formula, refer to atoms: H hydrogen, C carbon F fluorine, N nitrogen, O oxygen, S sulphur, P phosphorus. CHO designates a formyl moiety. NHCONH2 designates a ureido moiety.
A first aspect of the disclosure relates to a compound characterized by a general formula (100)
Figure imgf000009_0001
(100), wherein
A is selected from
- CH2OH, CH2NH2 and CH2NHR°, or from
- C R 2OH, C R 2NH2 and C R 2NHR°, or from
- ( )-CH(OH)R1, (ft)-CH(NH2)R\ ( )-CH(NHR°)R1, (Sj-CH(OH)R1, (S)-CH(NH2)R\ and (S)- CH(NHR°)R\ wherein
R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl, wherein
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
G is F and L is H or Ci to C4 alkyl; or
A and L are connected via a moiety -CRV and L is -O- or -CRV, wherein each R5 is
independently being from H, F and R1, or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl -CO-); with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and
A is selected from (/?)~CH{OH), ( )~CH(NH2), ( )-CH(NHR0}, (Sj-CH(OH), (S)~CH{NH2) (S)- CH(NHR°), (R)~C(OH)R1 , (,f?)-C(NH2)R ! (R)-C( HR°)R\ (Sj-C(OH)R1 , {S)-C( H2)R\ and (S)- C(NHR°)R1 , (A and L together form a four-membered moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NH R, CH2CH2F, CHsCHF2i (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymeth l, 2-aminoethyl, 2-hydroxyethyl , CH2NHR, (CH2)nCH2F, (CH2)riCHF2, (CH2)ilCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted C; to C4 alky I,
and G is H, or
iii. A and L are connected via a moiety -CR5- and L is O, S or CR52, and G is H wherein each R5 is independently being from H, F and R1 , or R52 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl -CO-); with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); (particularly wherein L is O) and
A is selected from ( )-CH(OH), ( )-CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)- CH(NHR°), ( )-C(OH)R1, ( )-C(NH2)R1 , ( )-C(NHR°)R1, (Sj-C(OH)R1 , (S)-C(NH2)R\ and (S)-
C(NHR°)R1, (A and L together form a propylene or O-ethylene moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl.or
iv. A and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I , and G is H, wherein three or four members proximal to the 4' carbon are -CRV, with one member optionally selected from -0-, -S-, -SO-, -SO2-, and -NHR0-, (particularly wherein L is O, and L is connected to the 5' carbon via -(CR52)4- ),
wherein each R5 is independently being from H, F and R1, or R52 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR0-, thereby forming a lactone, thiolactone or lactame); with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S);
and wherein optionally, two adjacent carbon members form a double bond -CR5=CR5-, and the member positioned proximal to the 5' carbon of ring I A is selected from (ft)-CH(OH), (R)- CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)-CH(NHR°), ( )-C(OH)R1, (R)- C(NH2)R1, (ft)-C(NHR°)R\ (Sj-C(OH)R1, (S)-C(NH2)R1, and (S)-C(NHR°)R\
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and wherein
a. for i-iv, Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000011_0001
wherein Ra designates the bond linking the moiety to moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, and amino-substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V-morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000012_0001
wherein Rw designates the bond linking the moiety to moiety (200) or (201), or
b. for i-ii, Rw is H and Rz is characterized by a general formula (400), (401), or (402):
Figure imgf000012_0002
wherein RA designates the bond linking the moiety to moiety (100), and T is OH or H, and K2 and K6 are selected from OH and NH2, or
c. for i-ii, Rw and Rz are both H,
with the proviso for i-ii, that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and R3 is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and R3 is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and R3 is H and Rz is H;
- A is CH2OH, B is 2'-N-ethyl, Rz is H, R3 is (200) and D is OH;
- A is CH2NH2, B is OH, Rz is H, R3 is (200) and D is OH.
and wherein
B is selected from NH2, OH, H, and NHR2,
wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl,
particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or
COCH(NH2)(CH2)3NHC(NH)NH2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl.
A first sub aspect of the first aspect of the disclosure relates to a compound characterized by a general formula (100)
Figure imgf000013_0001
(100), wherein
A is selected from
- CH2OH, CH2NH2 and CH2NHR°, or from
- C R 2OH, C R 2NH2 and C R 2NH R°, or from
- (ft)-CH(OH)R\ (ft)-CH(NH2)R\ (ft)-CH(NHR°)R\ (Sj-CH(OH)R1 , (S)-CH(NH2)R1 , and (S)- CH(NHR°)R1 , wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl, wherein
- G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
- G is F and L is H or Ci to C4 alkyl;
or
A and L together form a four-membered mono- or oligo- amino-, hydroxy- and/or fluoro- substituted alkyl or O-alkyI chain bridging the 4' and 5' carbon atoms of ring I, thereby forming a six-membered ring, wherein the 6' C in position (the 6' carbon linked to the 5' carbon of ring I) is selected from (R)- CH(OH), (ft)-CH(NH2), ( )-CCHs(OH), (ft)-CCH3(NH2); (S)-CH(OH), (S)-CH(NH2); (S)-CCH3(OH), and (S)-CCH3(NH2), and G is H, in other words,
A and L are connected via a moiety -CR5 2- and L is -O- or -CR5 2-, in other words, the 4' and 5' carbon are connected by a bridge (4'C)-L-CR5 2-CR5 2-A-(5'C),
wherein each R5 is independently being from H, F and R1 , and
A is selected from ( )-CH(OH), ( )-CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)- CH(NHR°), ( )-C(OH)R1 , ( )-C(NH2)R1 , (ft)-C(NH R°)R\ (Sj-C(OH)R1 , (S)-C(NH2)R1 , and (S)- C(NHR°)R1 , (A and L together form a four-membered moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and G is H, and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2 (B is glycinyl); COCH(NH2)(CH2)4NH2 (B is lysinyl), or COCH(NH2)(CH2)3NHC(NH)NH2 (B is arginyl), more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
a. Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000015_0001
wherein Ra designates the bond linking the moiety to the oxygen designated ORw of moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2 (D is glycinyl); COCH(NH2)(CH2)4NH2 (D is lysinyl), or COCH(NH2)(CH2)3NHC(NH)NH2 (D is arginyl), and amino-substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V-morpholino, O- (CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000015_0002
wherein Rw designates the bond linking the moiety to the carbon designated W of moiety (200) or (201), or
b. Rw is H and Rz is characterized by a general formula (400), (401), or (402):
Figure imgf000015_0003
wherein RA designates the bond linking the moiety to the oxygen designated Rz of moiety (100), and T is OH or H, and K2 and K6 are selected from OH and NH2, or C. or Rw and Rz are both H,
with the proviso that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and Rw is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and Rw is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and Rw is H and Rz is H.
- A is CH2OH, B is 2'-N-ethyl, Rz is H, Rw is (200) and D is OH;
- A is CH2NH2, B is OH, Rz is H, Rw is (200) and D is OH.
Particularly preferred embodiments show a formamido or ureido moiety in position D. Alternatively, a hydroxy ureido moiety is introduced in position D to increase H-bonding capabilities. Substituted N- alkyl is possible in D also with at least one of the variations in position A or B, particularly with a six- ring formed between the 4' and 5' carbon of ring I. N-alkyl modifications in D that otherwise are unchanged natural paromomycin or neomycin type ring I are disclaimed.
Particular embodiments include compounds characterized by the general formula (1 10), particularly
(1 11)
Figure imgf000016_0001
Particular embodiments include compounds characterized by the general formula (120), particularly (121)
Figure imgf000016_0002
wherein A, B, D, E, G, L and Q have the same meaning as indicated above. Particular embodiments include compounds described by a general formula (101), particularly by (102) or (102a)
Figure imgf000017_0001
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
V is selected from H, OH, NH2, NHR and NHR2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH, (CH2)nNH2, (CH2)nF with n being 2, 3 or 4,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Οβ alkyl, and COR2A, wherein R2A is an amino-substituted Ci to C& alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, unsubstituted or amino-substituted or hydroxy-substituted Ci to C4 alkyl, COCH2NH2 (B is glycinyl); COCH(NH2)(CH2)4NH2 (B is lysinyl), or COCH(NH2)(CH2)3NHC(NH)NH2 (B is arginyl), more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
and wherein D, E, Q and W, where appropriate, have the meaning indicated above. For certain countries, particularly for Europe, compounds defined according to the above formula (102a) for which Rx is methyl when U is O, V is H, B is NH2 and D is OH, are disclaimed. This disclaimer is not valid for the United States of America.
Particular embodiments include compounds described by a general formula (103), particularly by (104) or (104a)
Figure imgf000018_0001
(104a)
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR0, and the other one is H, wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
W, where appropriate, has the same meaning as indicated in the first aspect, and B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO (formylamido), -CONH2 (ureido), and CO(CH2)nNH2 with n selected from 1 (glycinyl), 2 and 3, lysinyl and arginyl, and D is OH or B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or D is selected from NH-CHO and
Figure imgf000018_0002
Acetyl, propanoyi and higher acyl groups will not work in B but inclusion of amino groups in the acyl group helps to rescue the activity
Particular embodiments include compounds described by a general formula (105), particularly by (106) or (106a)
Figure imgf000019_0001
(106a)
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR0, and the other one is H, wherein R° has the same meaning as indicated in claim 1 , particularly one of Y and Y' is selected from OH, NH2 and CH2NH R0 wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and the other one of Y and Y is H or R , wherein each R independently of any other R has the meaning defined in claim 1 , particularly Y and Y' is H or R and each R independently of any other R is selected from Ci to C3 substituted or unsubstituted alkyl, more particularly one of Y and Y' is H and R is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), or a C2 to C4 alkenyl or alkynyl moiety, particularly ethenyl (-CHCH2), ethynyl (C-CH) or allyl (CH- CHCH2), and B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in claim 1.
In particular embodiments, Q is OH , L is OH, G is H.
In particular embodiments, Y is selected from OH, NH2 and CH2NH R0 and Y is H (R configuration), wherein R° has the meaning indicated above.
In particular embodiments, Y is H and Y' is selected from OH, NH2 and CH2NHR° (S configuration), wherein R° has the meaning indicated above.
In particular embodiments, the compound is described by formula (106a) and a. R is selected from methyl, ethyl, propyl and aminomethyl, Y is selected from NH2 and OH and Y is H (R configuration), or
b. R is selected from methyl, ethyl, propyl and aminomethyl, Y is H and Y is selected from NH2 and OH.
In particular embodiments, B is NH2.
In particular embodiments, D is OH.
In particular embodiments, E is H.
In particular embodiments, E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S.3 )- 2,5-dihydroxy-4-aminopentanoyl.
In particular embodiments, Q is OH or H, particularly Q is OH .
Particular embodiments are those wherein a. R is methyl, Y is NH2 and Y is H; b. R is ethyl, Y is NH2 and Y is H; c. R is propyl, Y is NH2 and Y' is H; d. R is aminomethyl, Y is NH2 and Y is H; e. R is ethenyl, Y is NH2 and Y is H; f. R is ethynyl, Y is NH2 and Y is H; g- R is allyl, Y is NH2 and Y is H; h. R is methyl, Y is OH and Y' is H; (156) i. R is ethyl, Y is OH and Y' is H; j- R is propyl, Y is OH and Y' is H; (142) k. R is aminomethyl, Y is OH and Y is H;
I. R is ethenyl, Y is OH and Y' is H; m . R is ethynyl, Y is OH and Y' is H; n. R is allyl, Y is OH and Y' is H;
0. R is methyl, Y' is NH2 and Y is H; (166)
P- R is ethyl, Y' is NH2 and Y is H; q- R1 is propyl, Y' is NH2 and Y is H; r. R1 is aminomethyl, Y' is NH2 and Y is H; s. R1 is ethenyl, Y' is NH2 and Y is H; t. R1 is ethynyl, Y' is NH2 and Y is H; u. R1 is allyl. Y' is NH2 and Y is H;
v. R1 is methyl, Y' is OH and Y is H; (155) w. R1 is ethyl, Y' is OH and Y is H; (189)
X. R1 is propyl, Y is OH and Y is H; (143) y- R1 is aminomethyl, Y is NH2 and Y is H; z. R1 and Y are methyl and Y is OH. (159)
Particular embodiments include compounds described by a general formula (102) or (102a)
Figure imgf000021_0001
wherein B is NH2l D is OH, Q is OH, Rx is H, U is O, V is H, E is H and a. Y is H and Y is OH (210) or b. Y is OH and Y is H (21 1).
or B is NH2, D is OH, Q is OH, Rx is methyl, U is O, E is H, V is H and c. Y is H and Y is OH (125) d. Y is H and Y is NH2 (139) e. Y is OH and Y is H (109) f. Y is H and Y is NH2 (150)
Particular embodiments are also those compounds wherein B is NHR2, wherein R2 is selected from - CHO, -CONH2, Ci to Ce substituted or unsubstituted alkyl, particularly wherein R2 is -CHO, -CONH2 or an unsubstituted methyl, ethyl, or propyl.
Other particular embodiments are those compounds wherein B is NH2.
In particular embodiments thereof, D is selected from NHCHO (formamide), NHCONH2 (ureide), - NHCONHOH and NHR4, wherein R4 is selected from Ci to C4 unsubstituted alkyl and Ci to C4 aminosubstituted alkyl.
In particular embodiments thereof, D is OH.
Particular embodiments include compounds described by a general formula (107), particularly by (108) or (108a)
Figure imgf000022_0001
wherein W has the meaning indicated above, Y is selected from OH, NH2 and NHR0, wherein R° is selected from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being an unsubstituted Ci to C4 alkyl), and B is selected from H, OH, NHCHO (formamido), NHCOCH2NH2 (glycinyl), lysinyl, arginyl and NHR2, wherein R2 is selected from unsubstituted, amino-substituted and/or hydroxy-substituted Ci to C4 alkyl, or from COR2A, wherein R2A is an amino-substituted Ci to C4 alkyl, particularly wherein a B is OH and Y is OH (1 18) b B is NHCH3 and Y is OH (1 15)
c. B is NHCH2CH3 and Y is OH (127)
d B is NH(CH2)2CH3 and Y is OH (128) e. Bis H and Y is NH2(173)
f. B is OH and Y is NH2(119)
g. Bis NHCH3andYis NH2(171)
h. B is NHCH2CH3 and Y is NH2 (172)
i. Bis NHCOandYis NH2(182)
j. B is NHCOCH2NH2 and Y is NH2 (175) The following compounds are similarly encompassed: a. 5"-deoxy-5"-formamidoparomomycin (137) b. 5"-deoxy-5"-ureidoparomomycin (141) c. 3',5"-dideoxy-5"-formamidoparomomycin (153) Particular embodiments include the compounds:
Figure imgf000023_0001
(DC 100) (064)
Figure imgf000024_0001
Page 23
Figure imgf000025_0001
Page 24
Figure imgf000026_0001
A second sub aspect of the first aspect of the invention relates to a compound being characterized by a general formula (100)
Figure imgf000026_0002
(100), wherein
A and L are connected via a moiety -CR5- and L is O, S or CR52, and G is H
wherein each R5 is independently being from H, F and R1, or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl -CO-); with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S);
(particularly wherein L is O) and
A is selected from ( )-CH(OH), (ft)-CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)- CH(NHR°), (ft)-C(OH)R\ (ft)-C(NH2)R\ (ft)-C(NHR°)R\ (Sj-C(OH)R1, (S)-C(NH2)R\ and (S)- C(NHR°)R1, (A and L together form a propylene or O-ethylene moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl.and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to C& alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000027_0001
wherein Ra designates the bond linking the moiety to the oxygen designated ORw of moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2 , and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V-morpholino, O- (CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000027_0002
wherein Rw designates the bond linking the moiety to the carbon designated W of moiety (200) or (201).
In particular embodiments, the compound is characterized by the general formula (110), particularly (1 11)
Figure imgf000028_0001
wherein A, B, D, E, G, L, Q and W have the same meanings as indicated above.
In particular embodiments, the compound is characterized by the general formula (120), particularly (121)
Figure imgf000028_0002
wherein A, B, D, E, G, L and Q have the same meaning as indicated above.
In particular embodiments, the compound is described by a general formula (101'), particularly by (102') or (102a')
Figure imgf000028_0003
Figure imgf000029_0001
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from N H2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl, and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
In particular embodiments, the compound is described by a general formula (103'), particularly by (104') or (104a')
Figure imgf000029_0002
Figure imgf000030_0001
O H
(104a')
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR0, and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH2 and CH2NHR°,
wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,more particularly wherein Y is H and Y is OH,
W, where appropriate, has the same meaning as indicated in the first aspect, and
B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), - CHO, -CONH2, and D is OH or
B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or
D is selected from NH-CHO and NH-CONH2 and B is NH2.
In particular embodiments, the compound is described by a general formula (103'h), particularly by (104'h) or (104a'h)
Figure imgf000030_0002
Figure imgf000031_0001
O H
(104a'h)
W, where appropriate, has the same meaning as indicated in the first aspect, and
B is H2l D is OH, E is H and
a. Y is H and Y' is OH (203) or
b. Y is OH and Y' is H (204).
In particular embodiments, Y is H and Y' is selected from OH, N H2 and CH2NHR0, wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in in the first aspect.
In particular embodiments, Y' is OH .
In particular embodiments, B is NH2.
In particular embodiments, D is OH.
In particular embodiments, E is H.
In particular embodiments, E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2ft,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3R)- 2,5-dihydroxy-4-aminopentanoyl.
In particular embodiments, Q is OH or H, particularly wherein Q is OH.
Particular embodiments include the compounds:
Figure imgf000032_0001
/ °
R R (100), wherein
A and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I, and G is H wherein three or four members proximal to the 4' carbon are -CR5 2-, with one member optionally selected from -0-, -S-, -SO-, -SO2-, and -NHR°- (particularly wherein L is O, and L is connected to the 5' carbon via -(CR5 2)4- ),
wherein each R5 is independently being from H, F and R1 , or R52 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl -CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR0-, thereby forming a lactone, thiolactone or lactame);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and wherein optionally, two adjacent carbon members form a double bond -CR5=CR5-, and
the member positioned proximal to the 5' carbon of ring I A is selected from (f?)-CH(OH), (R)- CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)-CH(NHR0), ( )-C(OH)R1 , (ft)-C(NH2)R1 , ( )-C(NHR°)R1 , (Sj-C(OH)R1 , (S)-C(NH2)R1 , and (S)-C(NHR°)R1 ,
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl,
CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Οβ alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2) NH2, or COCH(NH2)(CH2)3NHC(NH)NH2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl, and
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000033_0001
wherein Ra designates the bond linking the moiety to the oxygen designated OR" of moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(N H2)(CH2)3NHC(NH)NH2 , and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V-morpholino, O- (CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000034_0001
wherein Rw designates the bond linking the moiety to the carbon designated W of moiety (200) (201).
In particular embodiments, the compound is described by a general formula (101"), particularly by (102") or (102a")
Figure imgf000034_0002
(102a")
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxym ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
V and V independently are selected from H, OH, NH2, NHR and NHR2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH, (CH2)nNH2i (CH2)nF with n being 2, 3 or 4,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alky I,
particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
In particular embodiments, the compound is described by a general formula (103"), particularly by (104") or (104a")
Figure imgf000035_0001
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR0, and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH2 and CH2NHR0, wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
more particularly wherein Y is H and Y' is OH,
W, where appropriate, has the same meaning as indicated in claim 1 , and
B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO, -CONH2, and D is OH or
B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or
- D is selected from NH-CHO and NH-CONH2 and B is NH2.
In particular embodiments, the compound is described by a general formula (103"h), particularly by (104"h) or (104a"h)
Figure imgf000036_0001
(104a"h)
W, where appropriate, has the same meaning as indicated in the first aspect, and
B is NH2. D is OH, E is H and
a. Y is H and Y' is OH (196) or b. Y is OH and Y" is H (199),
In particular embodiments, Y is H and Y' is selected from OH, NH2 and CH2NHR0, wherein R° has the same meaning as indicated in the first aspect, particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and
B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in claim 1.
In particular embodiments, Y' is OH.
In particular embodiments, B is NH2.
In particular embodiments, D is OH.
In particular embodiments, E is H.
In particular embodiments, E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl.
In particular embodiments, Q is OH or H, particularly wherein Q is OH.
Particular embodiments include the compounds:
Figure imgf000037_0001
Particular embodiments relate to the use of a compound according to any of the previously described aspects, sub aspects and embodiments, or combinations of particular features, in the therapy of bacterial infection by systemic administration. The skilled artisan is aware that on the basis of the data provided and the general description, certain compounds can be identified that show advantageous selectivity for the bacterial, rather than the eukaryotic mitochondrial, ribosome. Particular embodiments having a favorable selectivity comprise a hydroxyl moiety linked to the 6' carbon (position A), particularly wherein the 6' C is in (S) configuration.
In particular embodiments of this aspect, the compound for use in the therapy of bacterial infection is administered by systemic administration in a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U. Patients carrying these mutations are at particular jeopardy of suffering hearing loss and other permanent side-effects of AGA administration.
Particular embodiments relate to the use of a compound according to any of the previous aspects or embodiments in the therapy of bacterial infection, particularly by systemic administration. Certain particular embodiments relate to its use in infections caused by the so-called ESKAPE group of bacterial pathogens (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa and Enterobacter species)( see Boucher et al. Clinical Infectious Diseases. 48 (1): 1-12; Renner et al. Appl Environ Microbiol. 2017 Feb 15; 83(4): e02449-16) the infection is caused by a pathogen selected from the genera Klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli), Mycobacterium, Pseudomonas (particularly P. aeroginosa), Acinetobacter (particularly A. baumannii), Enterobacter (particularly E. cloacae), and Neisseria (particularly N. gonorrhoeae).
Another aspect relates to the use of a compound according to any of the aspects or embodiments disclosed herein, in the therapy of bacterial infection, wherein the infection is caused by a pathogen comprising a resistance determinant selected from AAC(6') aminoglycoside /V-acetyltransferase, AAC(2') aminoglycoside /V-acetyltransferase, APH(3') aminoglycoside O-phosphotransferase and ANT(4') aminoglycoside O-nucleotidyltransferase.
Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen selected from the genus Mycobacterium, particularly by systemic administration.
Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen comprising an AAC(2') aminoglycoside /V-acetyltransferase resistance determinant.
Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, wherein B is selected from H, OH, NR2, and NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl; for use in the therapy of infection by a bacterium, wherein the bacterium comprises an AAC(2') aminoglycoside /V-acetyltransferase resistance determinant and/or the infection is caused by a pathogen selected from the genus Mycobacterium.
Particular embodiments relate to a compound according to the first aspect, in particular the first subaspect, for use in the therapy of infection by a bacterium, wherein the bacterium comprises a resistance determinant selected from
- AAC(6') aminoglycoside /V-acetyltransferase and / or
- ANT(4') aminoglycoside O-nucleotidyltransferase and / or
- APH(3') aminoglycoside O-phosphotransferase
wherein the compound is defined by a general formula (101), (102) or (102a), wherein Y' is selected from OH, NH2 and NHR0, wherein R° is selected from the group consisting of methyl, ethyl, 2- aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and particularly wherein Y' is OH, more particularly wherein V is H, U is O and Y' is H, even more particularly for use by systemic administration.
In particular embodiments, the resistance determinant is selected from the following table:
Figure imgf000039_0001
APH(3')- Aminoglycoside 0- 3'-0H V01547, and others
III phosphotransferase
5"-0H
APH(3')- Aminoglycoside 0- 3'-0H X07753, and others
VI phosphotransferase
5"-0H
ANT(4')- Aminoglycoside 0- 4'-0H U35229, M 19465, and others
1 nucleotidyltransferase
4"-0H
ANT(4')- Aminoglycoside 0- 4'-0H M98270, AY1 14142, and others
II nucleotidyltransferase arm 16S-rRNA methyl transferase N7- AB825954, DQ177329, EU014811 ,
G1405 FJ788923, and others rmtB 16S-rRNA methyl transferase N7- NC_010558, and others
G1405 rmtC 16S-rRNA methyl transferase N7- AB824738, EU 144360, FJ807682,
G1405 and others rmtF 16S-rRNA methyl transferase N7- AB824739, JQ955744, and others
G1405
Summary of antimicrobial resistance mechanisms addressed
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the compound is characterized by a general formula (100)
Figure imgf000040_0001
(100), wherein
A is CH2OH or CR1 2OH, or ( )-CH(OH)R1 or (Sj-CH(OH)R1 , wherein
each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl, wherein
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
G is F and L is H or Ci to C4 alkyl; or
- A and L are connected via a moiety -CRV and L is -O- or -CRV,
wherein each R5 is independently being from H, F and R1, and
A is (Sj-CH(OH), or (Sj-C(OH)R1
wherein each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and G is H,
and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl,
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000041_0001
wherein Rw designates the bond linking the moiety to moiety (100); D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, and amino-substituted or hydroxy- substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V-morpholino, O- (CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000042_0001
wherein Rw designates the bond linking the moiety to moiety (200) or (201),
with the proviso that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and FT is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and R" is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and Rw is H and Rz is H;
- A is CH2NH2, B is OH, Rz is H, Rw is (200) and D is OH.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration according to claim 40 or 41 , wherein A is CR1 2OH or (Sj-CH(OH)R1, and each R1 is selected independently from the group consisting of methyl and ethyl.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein Q is H, and
a. A is selected from CH2OH, CR1 2OH, and (Sj-CH(OH)R1, wherein R1 is selected from the group consisting of methyl, ethyl, -CH2NH2, -CH2OH, 2-aminoethyl, and 2- hydroxyethyl, and G is H and L is 0-RA', S-RA' or RA , with RA being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or G is F and L is H or Ci to C4 alkyl; or
b. A and L are connected via a moiety -CR5 2- and L is -O- or -CR5 2-, wherein each R5 is independently being from H, F and R1, and A is (Sj-CH(OH), or (Sj-C(OH)R1 wherein R1 is selected from the group consisting of methyl, ethyl, -CH2NH2, -CH2OH, 2- aminoethyl, and 2-hydroxyethyl, and G is H.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein D is NCHO.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the compound is provided for administration to a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U.
Particular embodiments relate to a compound for use in the therapy of bacterial infection by systemic administration, wherein the infection is caused by a pathogen selected from the genera klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli, Mycobacterium,
Pseudomonas (particularly P. aeroginosa), Acinetobacter (particularly A. baumannii), Enterobacter (particularly E. cloacae), and Neisseria (particularly N. gonorrhoeae).
Modifications in position A.
Particular embodiments further relate to a compound selected from:
Figure imgf000043_0001
Particular embodiments further relate to the compounds:
Figure imgf000044_0001
Particular embodiments further relate to a compound selected from:
Figure imgf000044_0002
155: R= Me, X = OH 159 189: R= Et, X = OH 156, R = Me, X = OH
143: R= propyl, X = OH 257: R = Ethyl , X = OH
244: R = NH 2 X = OH 142: R = propyl, X = OH
245: R= CH2 , X = OH 241: R = NH2, X = OH
166: R= Me, X= NH 2 242: R = CH2, X = OH
266: R = Me, X = NH2
Me: methyl / -CH3; Et: ethyl CH2CH3)
Figure imgf000044_0003
Modifications in position B.
Particular embodiments further relate to a compound selected from:
Figure imgf000045_0001
118: B = OH 173: B = H
115: B = NH e 119: B = OH
127: B = NHEt 171 : B = NHMe
128: B = NHPr 172: B = NHEt
182: B = NHCHO
183: B = NHAc
175: B = NHCOCH 2NH 2
(Me: methyl / -CH3; Et: ethyl CH2CH3, Ac: COCH3) Compound 183 is not encompassed by the embodiments, but serves as a comparative example.
Modification, particularly alkylation of (ring I) N2' in both paromomycin and neomycin B prevents the action of AAC(2') AMEs with little to no loss of antibacterial activity (Example 3, see Tables 1 and 2).
Alkylation of N2' in paromomycin (1 15, 127, 128) further results in increased selectivity for the bacterial ribosome over the A1555G mutant mitochondrial and cytosolic ribosomes, predictive of reduced ototoxicity and systemic toxicity. Similarly, alkylation of N2' in neomycin B (171 , 172) results in increased selectivity for the bacterial ribosome over the mitochondrial (wild type and A1555G mutant) and cytosolic ribosomes, again predictive of reduced ototoxicity and systemic toxicity.
Deamination of N2' (173) and replacement of N2' by an hydroxyl group (1 19) in neomycin B overcomes the effect of AAC(2') with little to no loss of antibacterial activity (Tables 1 and 2).
Deamination of N2' (173) and replacement of N2' by an hydroxyl group (1 19) in neomycin B results in increased selectivity for the bacterial ribosome over the mitochondrial (wild type and A1555G mutant) and cytosolic ribosomes, predictive of reduced ototoxicity and systemic toxicity.
Conversion of the neomycin B 2'-amino group to a formamido group results in a compound (182) that retains most of the activity of the parent and which is not susceptible to deactivation by AAC(2'). This is distinct from the acetamide (183) and the glycinamide (175) both of which show very substantial loss of activity.
Conversion of the neomycin B 2'-amino group to a formamido group results in a compound (182) that displays increased selectivity for the bacterial ribosome over the mitochondrial (wild type and A1555G mutant) ribosomes, predictive of reduced ototoxicity.
The 2'-N-alkyl modification of neomycin and of paromomycin and other neosamine based AGA are suitable modifications to the parents enabling the reduction of toxicity and surmounting the effect of the AAC(2') resistance determinant. These modifications are suitable for use either alone or in combination with other tolerated aminoglycoside modifications designed to surmount other resistance mechanisms and/or reduce toxicity.
The 2'-deamination, 2'-amino to hydroxy conversion, and 2'-N-formylation of neomycin are suitable modifications to the parent that enable the reduction of toxicity and surmounting the effect of the AAC(2') resistance determinant. These modifications are suitable for use either alone or in combination with other tolerated aminoglycoside modifications designed to surmount other resistance mechanisms and/or reduce toxicity.
Modifications in position D.
Particular embodiments further relate to a compound selected from:
Figure imgf000046_0001
153
Particular embodiments also relates to any novel end products shown in the Figures, as well as to useful novel intermediates shown in the synthetic schemes disclosed herein.
Similarly, a dosage form for the prevention or treatment of bacterial infection is provided, comprising an aminoglucoside antibacterial drug according to one of the above aspects of the embodiments. Dosage forms may be for enteral administration, such as nasal, buccal, rectal, transdermal or oral administration, or as an inhalation form or suppository. Alternatively, parenteral administration may be used, such as subcutaneous, intravenous, intrahepatic or intramuscular injection forms. Optionally, a pharmaceutically acceptable carrier and/or excipient may be present.
Topical administration is also within the scope of the advantageous uses of the compounds. The skilled artisan is aware of a broad range of possible recipes for providing topical formulations, as exemplified by the content of Benson and Watkinson (Eds.), Topical and Transdermal Drug Delivery: Principles and Practice (1st Edition, Wiley 201 1 , ISBN-13: 978-0470450291); and Guy and Handcraft: Transdermal Drug Delivery Systems: Revised and Expanded (2nd Ed., CRC Press 2002, ISBN-13: 978-0824708610); Osborne and Amann (Eds.): Topical Drug Delivery Formulations (1st Ed. CRC Press 1989; ISBN-13: 978-0824781835).
Wherever alternatives for single separable features such as, for example, substituents A, B and D are laid out herein as "embodiments", it is to be understood that such alternatives may be combined freely to form discrete embodiments of the invention disclosed herein.
The present disclosure is further illustrated by the following examples and figures, from which further embodiments and advantages can be drawn. These examples are meant to illustrate the invention but not to limit the scope.
Fig. 1 and 2 show the synthesis of exemplary compounds disclosed herein, modified in position D. Fig. 3, 4 and 5 show the synthesis of exemplary compounds disclosed herein, modified in position B. Fig. 6 show the synthesis of exemplary compounds disclosed herein, modified in position A, G and L.
Examples.
General Methods and Materials.
Chemistry: All syntheses were run under an atmosphere of nitrogen or argon. Solvents were dried and purified by standard techniques.
Minimal inhibitory concentrations (MIC) have been determined by broth microdilution assays (CLSI. Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically; Approved Standard— Tenth Edition. CLSI document M07-A10. Wayne, PA: Clinical and Laboratory Standards Institute; 2015.). IC50 values for bacterial, human chimeric, and rabbit reticulocyte ribosomes have been determined by in-vitro translation assays as described previously (Proc. Nat. Ac. Sci USA 2012, 109(27): 10984-10989).
Example 1 : Modification of the 5" OH of paromomycin or neomycin (position D).
Chemical synthesis of compounds modified in position D / the 5" carbon.
See the synthetic scheme of Fig. 1.
Particular embodiments encompass the compounds N, O and P of Fig. 1 and their use as an intermediate of an aminoglycoside drug derivative.
4',6'-0-Benzylidene-penta-N-benzyloxycarbonyl-5"-deoxy-5"-formamido-paromomycin (N).
A stirred solution of 4\6'-0-benzylidene-penta-A/-benzyloxycarbonyl-5"-amino-5"-deoxy- paromomycin M (Hanessian et al. Antibiotics 1977, 30, 983) (250 mg, 0.18 mmol) in DCM (3 mL) was treated with formic acetic anhydride (3 mL) at RT. The reaction mixture was stirred for 2 h and then concentrated to dryness under reduced pressure. The residue was dissolved in MeOH (5 mL) and to this solution was added aq-NaHCC>3 (5 mL) at RT. The mixture was stirred for 1 h at RT and concentrated to dryness under reduced pressure. The residue was purified by column chromatography on silica gel eluting with CHCVMeOH (49: 1) to give N (175 mg, 69 %). [a]RT D +44.3 (c 0.53, MeOH). ESIHRMS calculated for C7iH8oN6024Na [M+Na]+, 1423.5122; found, 1423.5095.
5"-Deoxy-5"-formamido-paromomycin acetate salt (137).
To a stirred suspension of Pd(OH)2/C (160 mg, prewashed with glacial acetic acid) in water (2 mL) was added a solution of N (80 mg, 0.06 mmol) in dioxane (2 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (45 psi) for 8 h, filtered, concentrated under reduced pressure, and purified by Sephadex C-25 column chromatography (0.6 % N H4OH). The product containing fractions were concentrated under reduced pressure. The residue was dissolved in 10 %-AcOH and freeze dried to give 137 in the form of its acetate salt (25 mg, 26 %). [a]RT D +44.0 (c 0.8, H20). ESIHRMS calculated for C24H47N6O14 [M+H]+, 643.3150; found, 643.3145. This compound contained a second rotamer of the formamido group to the extent of 10%.
Penta-N-benzyloxycarbonyl-3',4',6'-hexa-0-acetyl-5"-deoxy-5"-acetamido-paromomycin (O).
A stirred solution of 4',6'-0-benzylidene-penta-A/-benzyloxycarbonyl-5"-amino-5"-deoxy- paromomycin M (80 mg, 0.06 mmol) in DCM (1 mL) was treated with acetic anhydride (1 mL) at RT and stirred for 24 h at RT. Pyridine (1 mL) was then added and the reaction mixture was stirred for an additional 18 h at RT. The reaction mixture was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH (49: 1) to give O (75 mg, 79 %). [a]RT D +33.8 (c 0.94, MeOH). ESIHRMS calculated for C79H92N603i Na [M+Na]+, 1643.5705; found, 1643.5653.
5"-Acetamido-5"-deoxy- paromomycin-acetate salt (165).
To a stirred solution of O (75 mg, 0.05 mmol) in MeOH (1 mL) was added NaOMe (20 mg, 0.37 mmol) at RT. After stirring for 2 h, the reaction mixture was neutralized with Amberlyst (H-form), filtered, and concentrated under reduced pressure. The residue as dissolved in dioxane (1.5 ml) and was added to a stirred suspension of Pd/C (75 mg) in 10%-AcOH (0.75 mL). The reaction mixture was stirred under a hydrogen atmosphere (45 psi) for 18 h, filtered, concentrated under reduced pressure, and purified by Sephadex C-25 column chromatography (0.8% NH4OH). The product- containing fractions were concentrated under reduced pressure. The residue was dissolved in 10%- AcOH and freeze dried to give 165 in the form of its acetate salt (26 mg, 49 %). [a]RT D +55.7 (c 0.87, H20). ESIHRMS calculated for C25H49N6Oi4 [M+H]+, 657.3307; found, 657.3273.
4',6'-0-Benzylidene-penta-N-benzyloxycarbonyl-5"-deoxy-5"-(3-N-benzylureido)-paromomycin (P).
A stirred solution of 4',6'-0-benzylidene-penta-A/-benzyloxycarbonyl-5"-amino-5"-deoxy- paromomycin M (100 mg, 0.07 mmol) in DCM (1 mL) was treated with benzyl isocyanate (50 μΙ_) at RT. The reaction mixture was stirred for 2 h, quenched with MeOH (5 mL), and concentrated to dryness under reduced pressure. The residue was purified by column chromatography on silica gel eluting with CHCb/MeOH (24: 1) to give P (70 mg, 64 %). [a]RT D +16.8 (c 0.9, MeOH). ESIHRMS calculated for C78H87N7024Na [M+Na]+, 1528.5700; found, 1527.5717.
5"-Deoxy-5"-ureido-paromomycin acetate salt (141).
To a stirred suspension of Pd/C (90 mg) in 80% AcOH (0.5 mL) was added a solution of P (30 mg, 0.02 mmol) in 80% AcOH (1.0 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (45 psi) for 12 h, filtered, concentrated under reduced pressure, and purified by Sephadex C-25 column chromatography (0.7% NH4OH). The product-containing fractions were concentrated under reduced pressure. The residue was dissolved in 10% AcOH and freeze dried to give 141 in the form of its acetate salt (8 mg, 42 %). [a]RT D +18.5 (c 0.27, H20). ESIHRMS calculated for C2 H48N7Oi4 [M+H]+, 658.3259; found, 658.3258.
For a summary of the synthetic approach of the following steps, see Fig. 2.
Particular embodiments encompass the compounds BB, BC, BD, BE, BF, BG, BH, Bl and BJ (see Fig. 2) and their use as an intermediate of an aminoglycoside drug derivative.
1 ,3,2 2'^6'''-Pentadeamino-1 ,3,2 2'^6'''-pentaazido-4 6'-0-benzylidene-5''-0-triisopropylsilyl- paromomycin (BB).
4',6'-0-Benzylidene penta-azidoparomomycin BA (Pathak, R.; Bottger, E. C; Vasella, A. Helv. Chim. Ada 2005, 88, 2967) (4.16 g, 5 mmol) was dissolved in CH2CI2 (80 mL), and treated with 2,6-lutidine (3.07 mL, 25 mmol) and triisopropylsilyl trifluoromethanesulfonate (1.51 mL, 6 mmol) were added. The reaction mixture was stirred at room temperature for 1.5 h then diluted with ethyl acetate, washed with saturated aqueous sodium bicarbonate and brine. The organic layer was dried with sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 4) to give BB as white solid (4.42 g, 89%). ESI-HRMS: m/z calculated for CsgHsgNisNaOuSi [M+Na]+ 1012.4033, found 1012.4030.
1 ,3,2 2''',6'''-Pentadeamino-1 ,3,2',2''',6'''-pentaazido-6,3',2'',3''',4'''-penta-0-benzyl-4',6'-0- benzylidene-5"-0-triisopropylsilyl- paromomycin (BC).
Intermediate BB (3.94 g 3.97 mmol) was dissolved in THF (40 mL) and cooled to 0 °C in an ice bath. Sodium hydride (60% in mineral oil, 1.27 g, 31.8 mmol) was added slowly with stirring followed by benzyl bromide (4 mL, 31.8 mmol) and tetrabutylammonium iodide (148 mg, 0.4 mmol). The reaction mixture was allowed to warm up to room temperature and stirred for 15 h before cooling to 0°C and addition of sufficient methanol to dissolve all solids. Saturated aqueous sodium bicarbonate was added and the mixture was extracted with ethyl acetate. The combined organic layer was washed with brine, dried with sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 4: 1) to give BC as a white solid (4.2 g, 73%) ESI- HRMS: mlz calculated for C74H89Ni5NaOi4Si [M+Na]+ 1462.6380, found 1462.6384.
6,3',2",3"',4"'-Penta-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-4',6'-0-benzylidene-5"-0- triisopropylsilyl-paromomycin (BD).
Intermediate BC (4.2 g 2.92 mmol) was dissolved in THF (42 mL), and treated with trimethylphosphine solution (1 M in THF, 23.3 mL, 23.3 mmol). The reaction mixture was heated to 65 °C with stirring for 1 h, then 0.1 M sodium hydroxide (42 mL) was added, and the mixture stirred at 65 °C for another 3 h before it was cooled to room temperature. N- (Benzyloxycarbonyloxy)succinimide (7.27 g, 29.2 mmol) and potassium carbonate (4.03 g, 29.2 mmol) were added and the mixture was stirred at room temperature for 15 h. Saturated aqueous sodium bicarbonate was added, and the mixture was extracted with ethyl acetate. The combined organic layer was washed with brine, dried with sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 2: 1) to give BD as a white solid (4.52 g, 78%). ESI-HRMS: mlz calculated for Cn4Hi29N5Na024Si [M+Na]+ 2003.8728, found 2003.8725.
6,3',2",3"',4"'-Penta-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-4',6'-0-benzylidene- paromomycin (BE).
Intermediate BD (1.98 g, 1 mmol) was dissolved in THF (50 mL), and treated with tetrabutylammonium fluoride solution (1 M in THF, 2 mL, 2 mmol) followed by stirring at room temperature for 1 h. The reaction mixture was concentrated and the residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 1) to give BE as a white solid (1.64 g, 90%) ESI- HRMS: mlz calculated for Cio5Hio9N5Na024 [M+Na]+ 1847.7394, found 1847.7396.
5"-Azido-6,3',2",3"',4"'-penta-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-4',6'-0- benzylidene-5"-deoxy~paromomycin (BF).
Intermediate BE (1.21 g, 0.66 mmol) was dissolved in CH2CI2 (12 mL), 4-toluenesulfonyl chloride (1.28 g, 6.6 mmol), triethylamine (1.8 mL, 13.2 mmol) and 4-dimethylaminopyridine (80 mg, 0.66 mmol) were added and the reaction mixture was stirred at room temperature for 16 h. The reaction mixture was diluted with ethyl acetate, washed with saturated aqueous sodium bicarbonate, 1 M HCI and brine. The organic layer was dried with sodium sulfate, filtered and concentrated. The residue was dissolved in dimethylformamide (12 mL), sodium azide (430 mg, 6.6 mmol) was added and the eaction mixture was stirred at 65 °C for 15 h, then cooled to room temperature, diluted with ethyl acetate, and washed with saturated sodium aqueous bicarbonate solution and brine. The organic layer was dried with sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 2: 1) to give BF as a white solid (1.08 g, 88%). ESI- HRMS: mlz calculated for CiosHiogNsNaCbs [M+Na]+ 1872.7459, found 1872.7458.
6,3',2",3"',4"'-Penta-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-4',6'-0-benzylidene-5"- deoxy-5"-formamido-paromomycin (BG).
Intermediate BF (1.57 g, 0.85 mmol) was dissolved in THF (16 mL), trimethylphosphine (1 M in THF, 1.7 mL, 1.7 mmol) was added and the reaction mixture was stirred at 65 °C for 1 h. Dl water (16 mL) was added and stirring was continued at 65 °C for another 3 h. The reaction mixture was concentrated and dried then was dissolved in CH2CI2 (16 mL), and formic acetic anhydride (1.6 mL) was added followed by stirring at room temperature for 1 h. The reaction mixture was evaporated to dryness and the residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 2) to give BG as a white solid (1.06 g, 67%). ESI-HRMS: mlz calculated for
Figure imgf000051_0001
[M+Na]+ 1874.7503, found 1874.7505.
6,3',6',2",3"',4"'-Hexa-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-5"-deoxy-5"-formamido- paromomycin (BH).
Intermediate BG (1.06 g, 0.57 mmol) was dissolved in THF (10 mL) and stirred with activated 4-A molecular sieves at room temperature for 1 h before sodium cyanoborohydride (730 mg, 11.5 mmol) and methyl orange (1 mg) were added. The reaction mixture was cooled to 0 °C and 2 M HCI in diethyl ether (11.5 mL, 23 mmol) was added drop wise after which the reaction mixture was stirred at 0 °C for 2 h. The reaction mixture was poured into ice-cold saturated aqueous sodium bicarbonate and extracted with ethyl acetate. The combined organic layer was washed with brine, dried with sodium sulfate, filtered, and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 2) to give BH as a white solid (804 mg, 75%). ESI-HRMS: mlz calculated for Cio6Hii2N6Na024 [M+Na]+ 1876.7659, found 1876.7663.
6,3',6',2",3"',4"'-Hexa-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-5"-deoxy-5"-formamido- 4'-keto-paromomycin (Bl).
Intermediate BH (804 mg, 0,43 mmol) was dissolved in CH2CI2 (8 mL) and Dess-Martin periodinane (276 mg, 0.65 mmol) was added. The reaction mixture was stirred at room temperature for 7 h, then diluted with ethyl acetate, washed with saturated sodium aqueous bicarbonate and brine. The organic layer was dried with sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 2) to give intermediate Bl as a white solid (574 mg, 72%). ESI-HRMS: mlz calculated for Ci06HiioN6Na024 [M+Na]+ 1874.7503, found 1874.7505.
6,6',2",3"',4"'-Penta-0-benzyl-1 ,3,2',2"',6"'-penta-N-(benzyloxycarbonyl)-3',5"-dideoxy-5"- formamido-paromomycin (BJ).
A solution of intermediate Bl (300 mg, 0.16 mmol) in THF (1 mL) was cooled to -20 °C and treated with samarium(ll) iodide (0.1 M in THF, 10 mL, 1 mmol) was added followed by stirring at -20 °C for 1 h. Methanol (38 μί, 1 mmol) was added and the reaction mixture was warmed to 0 °C and stirred for 2 h. Saturated aqueos sodium bicarbonate was added at 0 °C and the mixture was extracted with ethyl acetate. The combined organic layer was washed with brine, dried by sodium sulfate, filtered and concentrated. The residue was purified by flash column chromatography (hexane: ethyl acetate 1 : 3) to give intermediate BJ as a white solid (84 mg, 30%). ESI-HRMS: mlz calculated for C99Hio6N6Na023 [M+Na]+ 1770.7241 , found 1770.7245.
3',5"-Dideoxy-5"-formamido-paromomycin (153).
Intermediate BJ (17.5 mg, 0.01 mmol) was dissolved in dioxane (0.2 mL), and 10% acetic acid (0.2 mL) and palladium hydroxide on carbon (17 mg) were added. The reaction mixture was stirred under a hydrogen atmosphere (48 psi) for 12 h, then was filtered, concentrated and purified by Sephadex C-25 column chromatography (0.17% ammonium hydroxide). The product-containing fractions were combined, acetic acid (41 μί, 0.69 mmol) was added, and the mixture was freeze dried to give 153 as a white solid in the form of the acetate salt (4.6 mg, 50%). ESI-HRMS: mlz calculated for C24H47N6Oi3 [M+H]+ 627.3201 , found 627.3197.
Biological testing of compounds modified in position D / the 5" carbon.
Compound 165 is shown as a comparative example.
In certain aspects of the data provided herein, the inventors demonstrate that combined substitutions at both C3' and C5" provides full protection against all relevant isoforms of APH(3'). A novel 5"-deoxy-5"-formamido substitution is described which retains full antibacterial activity when compared to the parent compound. Target specificity for the bacterial versus the human cytosolic decoding site is increased for some modifications.
Table 1 (Example 1). Position D: Activity Against Wild Type Isolates (MIC50 g/ml)
MRSA E coli P aeruginosa Cmpd AG38 AG39 AG42 AG44 AG03 AG01 AG55 AG31 AG32 AG33 AG86 paromomycin 4 >256 >256 4-8 4 2-4 2-4 >128 >128 >128 >128
Lividomycin 4 >128 >128 4-8 8-16 16 16 16 >128 128 128 B
Paromomycin derivs
137 4 >128 >128 2-4 4 4 4 ≥128 128 >128 >128
141 4-8 >128 >128 4 16 16 16 >128 >128 >128 >128
165 16-32 >128 >128 16 32-64 64 32 >128 >128 >128 >128
153 4 >128 >128 4 8 8-16 8-16 32-64 32 >32 nd
Table 2 (Example 1). Position D modified compounds in E coli carrying specific resistance determinants (MIC μg/ml)
AG16( AG17 AG 163/ AG 166 AG 182 AG1 AG1 AGO AG00
3 164 02 03 06 7
Resistance wt AAC(3 APH(3')- APH(3')- AAC(3) wt Arm wt ANT(3
Det. )-IV la lla -IV A ")
APH(3') AAC(3
-la )-l
paromomyc 2-4 2-4 >128 >128 >128 1 1-2 1-2 4
in
Lividomycin 4 nd >128 4-8 nd 2 16 1-2 4
B
Paromomycin derivs
137 2 nd 32-64 > 128 nd 1 8 1 4
141 nd nd nd nd nd nd nd 1 nd
165 nd nd nd nd nd nd nd 4-8 nd
153 2-4 nd 4-8 8-16 nd 2 32 2 4
Table 3 (Example 1): Position D:
MIC Compound 3' 5" WT APH(3')- APH(3')- APH(3')- APH(3)- Bac Mit Cyt
I II III VI
Paromomycin OH OH 1-2 > 64 > 64 > 64 > 64 0.04 140 31
Lividomycin H OH 2 > 64 2 > 64 2 0.04 109 53 B
137 OH Form. 1-2 > 64 > 64 > 64 > 64 0.04 144 90
153 H Form. 2 2 2 2 2-4 0.12 144 90
DC- 194 OH Form. 2 8 2-4 2 2 0.04 275 102
DC- 194 OH Form. 2 8 2-4 2 2 0.04 275 102
Neomycin OH OH 1 > 64 64 > 64 32-64 0.04 4.3 35
140 H OH 1 > 32 1 32 1 0.04 4.6 66
Ribostamycin OH OH 2 > 64 > 64 32-64 > 64 0.09 443 484
047 H OH 2-4 > 64 2-4 > 64 4 0.10 325 293
048 OH NH2 2-4 > 64 > 64 > 64 ≥64 0.09 76 50
130 OH Form. 4 > 64 > 64 > 64 > 64 0.24 364 359
Example 2: Modification of ring I in C4' and 5' by a six-ring system or by alkylation in C6' (position A). Target specificity for the bacterial versus the human cytosolic decoding site is increased for some modifications.
The preparation of a series of four analogues of the aminoglycoside antibiotics neomycin and paromomycin is described in which ring I, involved in critical binding interactions with the ribosomal target, is replaced by an apramycin-like dioxabicyclo[4.4.0]octane system. The effect of this modification is to lock the hydroxymethyl side chain of the neomycin or paromomycin ring I, as part of dioxabicyclooctane ring, into either the gauche-gauche or the gauche-trans conformation (respectively axial or equatorial to the bicyclic system). The antiribosomal activity of these compounds was investigated with cell-free translation assays using both wild type bacterial ribosomes and hybrid ribosomes carrying eukaryotic decoding A sites enabling the prediction of selectivity. Compounds substituted with an equatorial hydroxyl or amino group are considerably more active than their axial diastereomers lending strong support to crystallographically-derived models of aminoglycoside- ribosome interactions. One such bicyclic compound carrying an equatorial hydroxyl group has activity equal to that of the parent, yet displays better ribosomal selectivity, predictive of an enhanced therapeutic index. A paromomycin analog lacking the hydroxym ethyl ring I side chain is considerably less active than the parent. Antibacterial activity against model Gram negative and Gram positive bacteria is reported, for selected compounds, as is activity against engineered bacteria carrying specific resistance determinants. Analogues with a bicydic ring I carrying equatorial amino or hydroxyl groups mimicking the bound side chains of neomycin and paromomcyin, respectively, show excellent activity and by virtue of their novel structure retain this activity in strains that are insensitive to the parent compounds.
Synthesis: Experimental and Characterization Data for compounds 109, 125, 139 and 150.
Figure imgf000055_0001
icular embodiments encompass the compounds A, C, D, E, F and G of the preceding scheme and their use as an intermediate of an aminoglycoside drug derivative.
6'-Allyl-1 ,3,2^2' 6'''-pentadeamino-1 ,3,2',2''',6'''-pentaazido-6,3',2'',5'',3''',4'''-hexa-0-benzyl- paromomycin (CR):
To a stirred solution of A (Pathak et al., Helv. Chim. Acta 2008, 91, 1533) (1.0 g, 0.77 mmol) under Ar in anhydrous dichloromethane (20.0 mL) was added bis(acetoxy)iodobenzene (300.0 mg, 0.93 mmol) followed by a catalytic amount of TEMPO (12.0 mg, 0.08 mmol) in one portion at room temperature. The resulting reaction mixture was stirred for 12 h at room temperature and was quenched with saturated aqueous Na2S2C>3, washed with saturated aqueous NaHCC>3, brine, dried over Na2SC>4, and concentrated under reduced pressure to give the crude aldehyde B. To a solution of this aldehyde in anhydrous dichloromethane (10.0 mL) at 0 °C under Ar was added allyltributyltin (1.29 g, 3.89 mmol) followed by boron trifluoride ethyl etherate (133.0 mg, 0.04 mmol). The resulting reaction mixture was stirred at 0 °C for 2 h before it was quenched with saturated aqueous NaHCC . The combined extracts were washed with brine, dried over Na2S04, filtered, and concentrated to a afford gum. The crude product was purified via silica gel column chromatography (eluent: 2%-30% EtOAc in hexane) to give CR (295 mg, 30%, over 2 steps) and its S-isomer (293 mg, 28%, over 2 steps), as yellow foams.
CR: [a]D 26= +82.5 (c = 0.20, dichloromethane); ESI-HRMS: m/z calculated, for CeeHysNisOuNa [M+Na]+ 1348.5516, found: 1348.5491.
4-0-(2'-Azido-3',6'-di-0-benzyl-9'-bromo-4',8'-anhydro-2',7',9'-trideoxy-D-erythro-a-D-gluco- nonapyranosyl)-5-0-[3"-0-(2"',6"'-diazido-3"',4"'-di-0-benzyl-2"',6"'-dideoxy-β-L-idopyranosyl)- 2",5"-di-0-benzyl-β-D-ribofuranosyl]-1 ,3-diazido-6-0-benzyl-2-deoxystreptamine (D):
A stirred solution of CR (480.0 mg, 0.36 mmol) in anhydrous acetonitrile (5.0 mL) was treated with /V-bromosuccinmide (66.4 mg, 0.37 mmol) at 0 °C. The resulting reaction mixture was stirred at 0 °C for 12 h, then diluted with ethyl acetate (10.0 mL) and was washed with brine (5.0 mL). The organic layer was concentrated to afford a yellow oil that was purified by chromatography on silica gel (EtOAc/hexane 3% to 30%) to afford D (196.0 mg, 38%) as a white foam. [a]D 26= +73.0 (c = 0.46, dichloromethane); ESI-HRMS: m/z calculated, for C68H74Ni5Oi4BrNa [M+Na]+ 1428.4600, found: 1428.4596.
4-0-(2'-Azido-3',6'-di-0-benzyl-9'-bromo-4',8'-anhydro-2',7',9'-trideoxy-D-threo-a-D-gluco- nonapyranosyl)-5-0-[3"-0-(2"',6"'-diazido-3"',4"'-di-0-benzyl-2"',6"'-dideoxy-β-L-idopyranosyl)- 2",5"-di-0-benzyl^-D-ribofuranosyl]-1 ,3-diazido-6-0-benzyl-2-deoxystreptamine (E):
A solution of D (150.0 mg, 0.1 1 mmol) in dry dichloromethane (5.0 mL) was treated with Dess- Martin periodinane (90.6 mg, 0.21 mmol) and sodium bicarbonate (18.0 mg, 0.21 mmol), and stirred for 9 h under Ar at room temperature. The reaction mixture was washed with water followed by brine, dried, and concentrated under reduced pressure. The crude ketone (115 mg, 0.08 mmol) was stirred with NaBH4 (6.2 mg, 0.16 mmol) in methanol (4.0 mL) for 30 min. The reaction mixture was neutralized with acetic acid and concentrated under reduced pressure. The crude mixture of diastereomers (3: 1 ratio) was separated by silica gel column using 30% EtOAc in hexanes to give the title compound E (66.0 mg, 58%) as a white foam. [CI]D26= +67.9 (c = 0.19, dichloromethane); ESI-HRMS: m/z calculated, for C68H74Ni5Oi4BrNa [M+Na]+ 1428.4600, found: 1428.4626.
4-0-(2',6'-Diazido-3',6'-di-0-benzyl-9'-bromo-4',8'-anhydro-2',6',7',9'-tetradeoxy-D-threo-a-D-gluco- nonapyranosyl)-5-0-[3"-0-(2"',6"'-diazido-3"',4"'-di-0-benzyl-2"',6"'-dideoxy-β-L-idopyranosyl)- 2",5"-di-0-benzyl-β-D-ribofuranosyl]-1 ,3-diazido-6-0-benzyl-2-deoxystreptamine (F):
To a stirred solution of D (90.0 mg, 0.06 mmol) in dry dichloromethane (1.0 mL) and pyridine (21.7 mg, 0.27 mmol) at 0 °C under Ar was added triflic anhydride (40 mg, 0.14 mmol). The reaction mixture was stirred at 0 °C for 1 h and was quenched with saturated aqueous NaHCC . The reaction mixture was washed with brine, dried over Na2S04, filtered, and concentrated under reduced pressure. The crude product was stirred with sodium azide (20.0 mg, 0.30 mmol) in dry DMF (0.5 mL) at room temperature for 6 h after which the solvent was evaporated under reduced pressure. The residue was dissolved in dichloromethane (2.0 mL) and washed with water, brine, dried over Na2S04, filtered, and concentrated under reduced pressure. The crude product was purified via silica gel chromatography (eluent: 2% to 20% EtOAc in hexanes) to give F (45.0 mg, 49%) as a colorless oil. [a]D 26= +51.0 (c = 0.6, dichloromethane); ESI-HRMS: m/z calculated, for CesHysNisChsBrNa [M+Na]+ 1451.4686, found: 1451.4667.
4-0-(2',6'-Diazido-3',6'-di-0-benzyl-9'-bromo-4',8'-anhydro-2',6',7',9'-tetradeoxy-D-erythro-a-D- gluco-nonapyranosyl)-5-0-[3"-0-(2"',6"'-diazido-3"',4"'-di-0-benzyl-2"',6"'-dideoxy-β-L- idopyranosyl)-2",5"-di-0-benzyl-β-D-ribofuranosyl]-1 ,3-diazido-6-0-benzyl-2-deoxystreptamine (G):
To a stirred solution of E (70.0 mg, 0.05 mmol) in dry dichloromethane (1.5 mL) and dry pyridine (17.0 mg, 0.22 mmol) at 0 °C under Ar was added triflic anhydride (31.0 mg, 0.11 mmol). The reaction mixture was stirred at 0 °C for 1 h and was quenched with saturated aqueous NaHCC>3 and washed with brine, dried, filtered, and concentrated under reduced pressure. The crude product was stirred with sodium azide (32.0 mg, 0.49 mmol) in dry DMF (0.7 mL) at room temperature for 4 h after which the solvent was evaporated under reduced pressure. The residue was dissolved in dichloromethane (3.0 mL) and washed with water, brine, dried over Na2S04, filtered, and concentrated under reduced pressure. The crude product was purified via silica gel chromatography eluting with 2% to 30% EtOAc in hexanes to give G (61.0 mg, 67%) as an off-white foam. [CI]D26 = +132.1 (c = 0.11 , dichloromethane); ESI-HRMS: m/z calculated, for CesHysNisOisBrNa [M+Na]+ 1451.4686, found: 1451.4679.
Figure imgf000057_0001
X = OH, Y = H X = OH, Y = H, 63%
X = H, Y = OH X = H, Y = OH, 40%
X = H, Y = N3 »U139 X = H, Y = NH2, 40%
X = N3, Y = H >U158 X = NH2, Y = H: 60% General procedure A for hydrogenolysis. A stirred solution of substrate (0.02 mmol) in a mixture of 1 ,4-dioxane (0.5 ml_), deionized water H20 (0.2 ml_), and glacial acetic acid (20 μΙ_) was treated with Pd/C on carbon (20 wt. %, 100 % loading) and stirred for 48 h at room temperature under 40 psi of hydrogen. After completion, the reaction mixture was filtered through Celite® and the filtrate was evaporated under reduced pressure to give the crude product. The residue was dissolved in 0.002 M aqueous AcOH (2.0 ml_) and then charged to a Sephadex column (CM Sephadex C-25, 5.0 g). The Sephadex column was eluted with deionized water (50 ml_), 0.5% aqueous NH40H (40 ml_), and 1.5% NH40H (40 ml_). The product-containing fractions were combined and evaporated to give the product in the form of the free base, which was taken up in H20 (2 ml_) and treated with glacial acetic acid (10 eq). The resulting solution was lyophilized to give the product in the form of the acetate salt.
4-0-(2'-Amino-4',8'-anhydro-2',7',9'-trideoxy-D-erythro-a-D-gluco-nonapyranosyl)-5-0-[3-0-(2,6- diamino-2,6-dideoxy-β-L-idopyranosyl)-β-D-ribofuranosyl]-2-deoxystreptamine.5AcOH (109):
Following general procedure A, compound 109 (12.7 mg, 63%) was obtained from D (28.0 mg, 0.023 mmol), as a white foam. [a]D 26 = +25.7 (c = 0.37, H20); ESI-HRMS: m/z calculated, for C26H49N5Oi4Na [M+Na]+ 678.3174, found: 678.3166.
4-0-(2'-Amino-4',8'-anhydro-2',7',9'-trideoxy-D-threo-a-D-gluco-nonapyranosyl)-5-0-[3-0-(2,6- diamino-2,6-dideoxy-β-L-idopyranosyl)-β-D-ribofuranosyl]-2-deoxystreptamine.5AcOH (125):
Following general procedure A, compound 125 (7.0 mg, 40%) was obtained from E (30.0 mg, 0.02 mmol), as a white foam. [a]D 26 +30.5 (c = 0.20, H20); ESI-HRMS: m/z calculated, for C26H5oN5Oi4 [M+H]+ 656.3354, found: 656.3371.
4-0-(2',6'-Diamino-4',8'-anhydro-2',6',7',9'-tetradeoxy-D-threo-α-D-gluco-nonapyranosyl)-5-0-(β- paramobiosyl)-2-deoxystreptamine.6AcOH (139):
Following general procedure A, compound 139 (6.2 mg, 40%) was obtained from F (22.0 mg, 0.015 mmol), as a white foam. [a]D26 = +33.8 (c = 0.13, H20); ESI-HRMS: m/z calculated, for C26H5i N60i3 [M+H]+ 655.3514, found: 655.3505.
4-0-(2',6'-Diamino-4',8'-anhydro-2',6',7',9'-tetradeoxy-D-erythro-α-D-gluco-nonapyranosyl)-5-0-(β- paramobiosyl)-2-deoxystreptamine.6AcOH (150): A solution of G (20.0 mg, 0.014 mmol) in a mixture of 1 ,4dioxane (0.5 ml_), deionized water H20 (0.2 ml_), and 0.1 N NaOH (0.1 ml_) was treated with Pd/C on carbon (20 mg, 20 wt. %) and stirred for 8 h at room temperature under 40 psi of hydrogen. 10% Aqueous AcOH (0.2 ml_) was then added and the mixture was stirred for 20 h at room temperature under 40 psi of hydrogen. After completion, the reaction mixture was filtered through Celite®, evaporated under reduced pressure, and the residue was dissolved in AcOH (1 ml_) and then charged to a Sephadex column. The Sephadex column was eluted with deionized water H20 (50 ml_), 0.5% aqueous NH40H (40 ml_), and 1.5% NH40H (40 ml_) to give 150 (8.5 mg, 60%) as a white form. [a]D26 = +41.8 (c =0.17, H20); ESI-HRMS: m/z calculated, for C26H5i N60i3 [M+H]+ 655.3514, found: 655.3508.
Synthesis of compound 155:
1 ,3,2 2'^6'''-Pentaazido-6,3 2^5'',3''',4'''-hexa-0-benzyl-1 ,3,2',2''',6'''-pentadeaminoparomomycin- 6'-carboxylic Acid (H).
A solution of Ai (3.60 g, 2.80 mmol) in acetonitrile (16.5 mL) and water (16.5 mL) was stirred with TEMPO (87.5 mg, 0.56 mmol) and iodobenzene diacetate (1.98 g,6.16 mmol) for 3.5 h at room temperature then concentrated under vacuum and the resulting residue was dissolved EtOAc, and washed with 20% aqueous Na2S2C>3, 1 N HCI, and brine. The organic layer was dried with Na2S04, filtered, and concentrated. The residue was dissolved in toluene and purified by silica gel column chromatography (eluent: 70% EtOAc and 1 % AcOH in hexane) to afford H (3.60 g, 2.77 mmol, 99%) as an orange foam. ESI-HRMS: m/z calc for CegHegNisOisNa [M+Na]+ 1322.4995, found 1322.5044.
1 ,3,2 2'^6'''-Pentaazido-6,3 2^5'',3''',4'''-hexa-0-benzyl-1 ,3,2',2''',6'''-pentadeaminoparomomycin- 6'-(N-methoxy-N-methyl)carboxamide (I).
A stirred solution of H (4.64 g, 3.57 mmol), DMAP (91.1 mg, 0.72 mmol), and Λ/,Ο- dimethylhydroxylamine hydrochloride (0.52 g, 5.4 mmol) in DCM (30 mL) was treated dropwise at room temperature with a solution of DCC (1.11 g, 5.4 mmol) in DCM (5.7 mL). After stirring for 2 h, further DCC (0.37 g, 1.79 mmol) in DCM (1 mL) was added and stirring continued for 2 h before the reaction mixture was concentrated under vacuum. The residue was dissolved in EtOAc and washed with 1 N HCI and brine, dried with Na2S04, filtered, and concentrated. The residue was dissolved in toluene and purified by silica gel chromatography (eluent: 40% EtOAc in hexane) to give I (3.22 g, 2.40 mmol, 67%) as a white foam. ESI-HRMS: m/z calc for
Figure imgf000059_0001
[M+Na]+ 1365.5417, found 1365.5453.
Figure imgf000060_0001
Particular embodiments encompass the compounds H, I, J, K and L (both stereoisomers) of the preceding scheme and their use as an intermediate of an aminoglycoside drug derivative.
1 ,3,2',2"',6"'-Pentaazido -6,3',2",5",3"',4"'-hexa-0-benzyl-4'-0-trimethylsilyl-1 ,3,2',2"',6"'- pentadeaminoparomomycin-6'-(N-methoxy-N-methyl)carboxamide (J).
A solution of compound I (0.90 g, 0.67 mmol) in MeCN (6.7 mL) was stirred at room temperature with hexamethyldisilamine (0.43 mL, 2.1 mmol) for 3 h, after which concentration to dryness under vacuum gave J as a white foam that was used without further purification. ESI-HRMS: m/z calc for C7oH82Ni6Oi5SiNa [M+Na]+ 1437.5813, found 1437.5868.
1 ,3,2',2"',6"'-Pentaazido-6,3',2",5",3"',4"'-hexa-0-benzyl-6'-C-methyl-6'-oxo-4'-0-trimethylsilyl- 1 ,3,2',2"',6"'-pentadeaminoparomomycin (K).
A stirred solution of compound J (0.41 g, 0.29 mmol) in THF (2.85 mL) was cooled to -78 oC and treated dropwise with methylmagnesium chloride in THF (3 M, 2.9 mL). After stirring for 5 min the flask was transferred to an ice bath and stirred for another 10 mins, before the reaction mixture was quenched with aqueous NH4CI (1 mL) and the THF was removed under vacuum. The crude residue was dissolved in Et20 and washed with aqueous NH4CI and brine. The organic layer was dried with Na2S04, filtered, and concentrated, and the residue purified by silica gel column chromatography, eluting first with 16% EtOAc in hexanes and then by 20% EtOAc in hexanes, to afford ketone K (0.14 g, 0.10 mmol, 37%) of as a white foam. CegHygNisOuSiNa [M+Na]+ 1392.5598, found 1392.5637.
6 R)-1 I3I2\2"\6"'-Pentaazido-6I3\2'\5'\3"\4"'-hexa-0-benzyl-6'-C-methyl-4'-0^
1 ,3,2',2"',6"'-pentadeaminoparomomycin LR and 6'(S)-1 ,3,2',2"',6"'-Pentaazido-6,3',2",5",3"',4"'- hexa-0-benzyl-6'-C-methyl-4'-0-(trimethylsilyl)-1 ,3,2',2"',6"'-pentadeaminoparomomycin LS.
A solution of K (0.32 g, 0.24 mmol) in THF (1 .18 mL) and MeOH (1.18 mL) was stirred with NaBH4 (0.018 g, 0.47 mmol) for 20 mins, then concentrated under vacuum and the residue taken up in EtOAc, and washed with water and brine. The organic layer was dried with Na2S04, filtered, and concentrated, and purified by silica gel column chromatography, eluting first with 16% , then 18%, and finally 20% EtOAc in hexane to give first the 6'-(S) isomer LS (1 18 mg, 0.086 mmol, 37%) as a white foam and then the 6'-(R) isomer LR (123 mg, 0.086 mmol, 37%) also as a white foam with ESIMS CegHsiNisOuSiNa [M+Na]+ 1394.5754, found 1394.5784.
6'(R)-6'-C-Methylparomomycin (155).
A 1 M solution of TBAF in THF (0.05 mL) was added dropwise at room temperature to a stirred solution of compound LR (26.7 mg, 0.017 mmol) in THF (1 .65 mL). After completion the reaction mixture was diluted with Et20 and washed with aqueous NaHC03 and brine, dried with Na2S04, filtered, and concentrated to give a residue that was taken up in a mixture of dioxane (0.2 mL) and 10% AcOH in water (0.2 mL), treated with Pd/C (58 mg) and stirred under hydrogen (50 psi) for 18 h. The reaction mixture was diluted with water and filtered through Celite and concentrated to dryness. The residue was dissolved in Dl water (2 mL), loaded onto a CM Sephadex C-25 column that was eluted with Dl water and then with NH4OH in water starting (0.1 % to 0.8%). A few drops of glacial AcOH (10 μί) followed by lyophylization to give 155 penta acetate salt as a white solid (1 .8 mg, 10%). ESIMS: C24H47N5Oi4 [M+H]+ 630.3198, found 630.3212. A general scheme for preparing compound 159 is shown below:
'-Dimethylparomomycin DCWSU159
Figure imgf000062_0001
A general scheme for preparing compound 166 is shown below:
6'-C-Methyl neomycin 166
Figure imgf000063_0001
Figure imgf000063_0002
6,5-Fused Bicyclic Ring I 4,5 Aminoglycoside Analogues
Figure imgf000064_0001
R and S
i) NaOMe, MeOH ii) Pd/C, H 2
Figure imgf000064_0002
6,7-Fused Bicyclic Ring I Analogues
Figure imgf000064_0003
Synthesis of an Intermediate for Preparation of Five, six-fused derivatives DCWSU203 and DCWSU204, and for that of the six.six-fused derivatives DCWSU210 and DCWSU 21 1
Figure imgf000065_0001
Figure imgf000065_0002
Synthesis of Five, six-fused derivatives DCWSU203 and DCWSU204
Figure imgf000065_0003
DCWSU204 DCWSU203 Synthesis Six, six-fused derivatives DCWSU2 0 and DCWSU21
Figure imgf000066_0001
Figure imgf000066_0002
DCWSU211 DCWSU210
Synthesis of Seven, six-fused derivatives DCWSU196 and DCWSU199
i) TBAF, THF, 1 h
ii) (COCI)2, DMSO, CH2CI2, -78 °C,
Figure imgf000067_0001
-78 °C, 48%, -1 :1
Figure imgf000067_0002
Figure imgf000067_0003
Figure imgf000067_0004
Antimicrobial activity for compounds modified in position A.
The inventors have found that modifications at C4' and C6', forming a novel bicyclic motif in ring 1 , result in full protection against AAC(6'), ANT(4'), and partial protection against APH(3') isoforms II and VI. Compounds substituted with an equatorial hydroxyl or amino group are considerably more active than their axial diastereomers. The antibacterial activity of an equatorial hydroxyl group is equivalent to that of the parent, yet displays increased target specificity for bacterial versus human rRNA, a surrogate for increased drug safety.
Table 1 (Example 2). Activity Against Wild Type Isolates (MIC50 g/ml)
Figure imgf000068_0001
Table 2A (Example 2). Engineered E coli with specific resistance determinants (MIC50 g/ml)
Figure imgf000068_0002
neomycin 1 4 2 8 32 >256 0.5
109 16-32 nd nd nd nd nd nd
125 2 8 2-4 4 2-4 32-64 4
139 1-2 4 2-4 2 2 32-64 2
150 64-128 nd nd nd nd nd nd
142 1 nd nd nd nd nd nd
143 4 nd nd nd nd nd nd
155 2 nd nd nd nd nd nd
156 1 nd nd nd nd nd nd
159 4 nd nd nd nd nd nd
166 0.5-1 nd nd 0.5 16 > 64 nd
189 nd nd nd nd nd nd nd
Table 2B (Example 2). Engineered E coli with specific resistance determinants (MIC50 g/ml) pH430 pH414 pH415 pH421 pH422 AG037 pH423 AG036 pH432 AG 103
AAC(6')- AAC(6')- APH(3')- APH(3')- APH(3')- APH(3')-
WT ANT(4',4") ANT(4') arm
I II I II VI
PAR 1-2 2 2-4 > 128 > 128 > 128 > 128 32-64 1-2 2
0.25-
NEO 1 2 4 > 128 64 > 64 32-64 4-8 1
0.5
Bicyclic
125 1-2 1 1-2 > 32 4 16 2 0,5 1-2 1-2
109 16-32
139 0,5-1 1 1 > 32 8 8-16 1-2 0,25 1 0,5
64-
150
128
6'-mod.
159 1-2 > 64 > 64 > 64 8 16-32 2 4-8 142 1 1 1 > 32 > 32 > 32 > 32 32-64 1 1
156 1 1 1 > 32 > 32 > 32 > 32 32-64 1 1
155 1-2 2 2 > 32 > 32 > 32 > 32 > 32 2 8
143 4 > 128 > 128 > 128 32-64 64 4 16-32
166 0,5 0,5 1-2 > 32 > 32 > 64 > 32 16 0,5 1
Table 3 (Example 2)
The following table shows the results of another experiment determining the activity and selectivity of exemplary compounds modified in ring 1 :
MIC (Mg/mL) IC50 (μΜ) cmp 4' 6' conf WT AAC( ANT( APH(3 APH(3 Bac Mit Cyt d 6') 4') )-ll ')-VI
PAR OH OH lab 1-2 2-4 32-64 > 64 > 64 0.04 14 31
0
109 bicy OH ax 16-32 0.47 19 16
c 3 9
125 bicy OH eq 1-2 1-2 0.5 4 2 0.04 31 30
c 2
DC- bicy OH equat 4 4 2 16 16 0.1 20
196 cl. orial 4 0
DC- bicy OH axial 8 16 4-8 16-32 16 0.2 13
204 cl. 0 1
DC-210 bicy 0 equat 2-4 4 2 4 4-8 0. 32 50
cl. H orial 04 9
NEO OH NH2 lab 1 4 4-8 64 32-64 0.04 4.3 35
150 bicy NH2 ax 64- 0.48 4.1 12
c 128
139 bicy NH2 eq 0.5-1 1 0.25 8 1-2 0.12 2.3 19
c
Compd: compound; conf: configuration in 6'; bicyc: bicyclic; ax: axial, eq: equatorial; lab: labile
Compounds substituted with an equatorial hydroxyl or amino group are considerably more active than their axial diastereomers. The antibacterial activity of an equatorial hydroxyl group displays increased target specificity for bacterial versus human rRNA, a surrogate for increased drug safety. Example 3: compounds modified in the 2' C of ring I (position B).
Synthesis of 2' C modified compounds . 2'-N-Alkyl Paromomycin Derivatives.
For a general synthetic scheme see Fig. 3.
Particular embodiments encompass the compound S of Fig. 3 and its use as an intermediate of an aminoglycoside drug derivative.
1 ,3,2"',6"'-Tetra-N-acetyl-2'-N-benzyl-2'-N-methyl-paromomycin (S).
To a stirred solution of 1 ,3,2"',6"'-tetra-N-acetyl-paromomycin R (Cassinell et al. Antibiotics 1978, 31 , 378) (500 mg, 0.42 mmol) in methanol (10 mL) was added benzaldehyde (64 μΙ_, 0.63 mmol) at RT. After stirring for 0.5 h at RT glacial acetic acid (48 μΙ_, 1.07 mmol) and sodium cyanoborohydride (68 mg, 1.07 mmol) were added and stirring was continued for 18 h after which 4A-MS (2 g) were added followed by 37 % formaldehyde solution (103 μΙ_, 1.26 mmol), glacial acetic acid (48 μΙ_, 1.07 mmol) and sodium cyanoborohydride (68 mg, 1.07 mmol) at RT and stirring was continued for 2 h. The reaction was quenched with aq NaHC03 (10 mL) at RT. After stirring for 0.5 h the reaction mixture was concentrated to dryness under reduced pressure, dissolved in methanol (50 mL), and the precipitate was filtered off. The filtrate was concentrated under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHCI3/MeOH/NH40H (6:3: 1) to give S (156 mg, 42 %). [a]RTD +36.3 (c 0.27, MeOH). ESIHRMS calculated for C39H62N5O18 [M+H]+, 888.4090; found, 888.4103.
2'-N-Methyl-paromomycin acetate salt (1 15).
To a stirred suspension of Pd(OH)2/C (70 mg) in MeOH (0.5 mL) was added a solution of S (70 mg, 0.08 mmol) in MeOH (2.0 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (1 atm) for 1 h, filtered and concentrated under reduced pressure. The residue was dissolved in 2.5 M NaOH (2 mL) and heated to reflux for 15 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (0.4 % NH4OH). The product- containing fractions were concentrated under reduced pressure and the residue was dissolved in 10% AcOH and freeze dried to give 115 in the form of its acetate salt (20 mg, 27 %). [a]RT D +39.1 (c 0.67, H20). ESIHRMS calculated for C24H48N5O14 [M+H]+, 630.3198; found, 630.3180.
1 ,3,2"',6"'-Tetra-N-acetyl-2'-N-propyl-paromomycin (T).
To a stirred solution of 1 ,3,2"',6"'-tetra-A/-acetyl-paromomycin Ri (150 mg, 0.19 mmol) in methanol (5 mL) was added a 1 M solution of propionaldehyde in DCM (0.3 mL, 0.3 mmol) at RT. After stirring for 0.5 h at RT glacial acetic acid (33 μί, 0.57 mmol) and sodium cyanoborohydride (36 mg, 0.57 mmol) were added to the reaction mixture and stirring was continued for 3 h. The reaction was quenched with aq NaHC03 (1 mL) at RT. After stirring for 0.5 h the reaction mixture was concentrated to dryness under reduced pressure, and the residue was purified by column chromatography on silica gel eluting with CHCI3/MeOH/NH4OH (6:3:1) to give T (110 mg, 70 %). [a]RTD +38.6 (c 0.65, MeOH). ESIHRMS calculated for C34H60N5O18 [M+H]+, 826.3933; found, 826.3929.
2'-N-Propyl-paromomycin acetate salt (128).
Compound T (110 mg, 0.13 mmol) was dissolved in 2.5 M NaOH (2.5 mL) and heated to reflux for 15 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (0.6 % NH4OH). The product-containing fractions were concentrated under reduced pressure, and the residue was dissolved in 10% AcOH and freeze dried to give 128 in the form of its acetate salt (63 mg, 49 %). [a]RT D +54.3 (c 0.6, H20). ESIHRMS calculated for C26H52N5O14 [M+H]+, 658.351 1 ; found, 658.3502.
Preparation of 2'-Deamino-2'-Hydroxyparomomycin
Figure imgf000073_0001
Particular embodiments encompass the compound V of the preceding scheme and its use as an intermediate of an aminoglycoside drug derivative.
1 ,3,2'^6"'-Tetra-N-acetyl-2'-deamino-2'-benzyloxy-3',4',6'-tri-0-benzyl-6,2",5",3"',4"'-penta-0-acetyl- paromomycin (V).
A mixture of phenyl 2,3,4,6-tetra-O-benzyl-D-thioglucopyranoside (Ferrier et al., N. Carbohydr. Res. 1973, 27, 55) (213 mg, 0.24 mmol) and freshly activated molecular sieves (AW300, 600 mg) was suspended in DCM (5 mL). Then DMF (1 11 μί, 1.44 mmol) was added and the resulting mixture was stirred for 0.25 h at RT before it was was cooled to 0 °C and stirred for 0.25 h before NIS (83 mg, 0.36 mmol) and TMSOTf (65 μί, 0.36 mmol) were added. After stirring for additional 0.5 h at 0 °C a solution of U (Cassinelli et al. Antibiotics 1978, 31 , 382) (200 mg, 0.24 mmol) in DCM (2.5 mL) was added to the reaction mixture and the reaction mixture was slowly allowed to warm to RT and stirring was continued for 18 h. Then the reaction was quenched with aq Na2S2C>3 (2 mL) and concentrated to dryness under reduced pressure. The residue was dissolved in MeOH (20 mL), precipitate was filtered off, and the filtrate was concentrated under reduced pressure. The residue was purified by column chromatography on silica gel eluting with CHCb/MeOH (19:1) to give the desired product 1 1 (150 mg, 46 %). [a]RT D +134.5 (c 0.47, MeOH). ESIHRMS calculated for
Figure imgf000074_0001
[M+Na]+, 1377.5530; found, 1377.5514.
2'-Deamino-2'-hydroxy-paromomycin acetate salt (1 18).
To a stirred suspension of Pd(OH)2/C (150 mg) in MeOH (0.5 mL) was added a solution of V (150 mg, 0.1 1 mmol) in MeOH (3.5 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (1 atm) for 4 h, filtered and concentrated under reduced pressure. The residue was dissolved in 2.5 M NaOH (3 mL) and heated to reflux for 8 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (0.6 % NH4OH). The product-containing fractions were concentrated under reduced pressure. The residue was dissolved in 10% AcOH and freeze dried to give 1 18 in the form of its acetate salt (40 mg, 42 %). [a]RT D +35.3 (c O.73, H20). ESIHRMS calculated for C23H45N4O15 [M+H]+, 617.2881 ; found, 617.2891.
2'-N-Alkyl Neomycin and 2'-N-Acyl Neomycin Derivatives.
For a general synthetic scheme see Fig. 4.
Particular embodiments encompass the compounds AB and AC of Fig. 4 and their use as an intermediate of an aminoglycoside drug derivative.
1 ,3,6',2"',6"'-Penta-N-acetyl-neomycin (AA).
A stirred solution of neomycin sulfate (10 g, 14.04 mmol) in water (100 mL) was treated with cone aqueous NH4OH (50 mL) then concentrated under vacuum to yield neomycin free base as an off white solid. The solid was taken up in a mixture of water and methanol (3: 1 , 120 mL) and treated with 1 N HCI (14 mL) at RT before acetic anhydride (150 mL) was added dropwise over a period of 6 h followed by stirring for 24 h. At this stage LCMS analysis of the reaction mixture showed the incomplete reaction consequently the reaction mixture was concentrated under reduced pressure and the residue was re-subjected to the identical sequence of reaction conditions, after which LCMS analysis of the reaction mixture showed penta acetylated neomycin as a major product. Finally, the reaction mixture was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH/N^OH (5:4: 1) to give AA (4.5 g, 39 %). [a]RTD +43.9 (c 1.33, MeOH). ESIHRMS calculated for C33H57N6O18 [M+H]+, 825.3729; found, 825.3737. 1 ,3,6 2'^6"'-Penta-N-acetyl-2'-N-benzyl-2'-N-methyl-6,3 4^2 5 3'^4"'-hepta-0-acetyl-neomycin (AB).
To a stirred solution of AA (400 mg, 0.485 mmol) in methanol (8 mL) was added benzaldehyde (74 μί, 0.73 mmol) at RT. After stirring for 0.5 h at RT glacial acetic acid (83 μί, 1.45 mmol) and sodium cyanoborohydride (92 mg, 1.45 mmol) were added and stirring was continued for 5 h after which 4A- MS (1.2 g) were added followed by 37% formaldehyde solution (0.2 mL), glacial acetic acid (83 μί, 1.45 mmol) and sodium cyanoborohydride (92 mg, 1.45 mmol) at RT and stirring was continued for 2 h. The reaction was quenched with aq NaHC03 (10 mL) at RT. After stirring for 0.5 h the reaction mixture was concentrated to dryness under reduced pressure, dissolved in methanol (50 mL), and the precipitate was filtered off. The filtrate was concentrated under reduced pressure. The residue was dissolved in pyridine (8 mL) and treated with acetic anhydride (8 mL) at RT. The resulting mixture was stirred for 18 h before it was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH (9: 1) to give AB (370 mg, 62 %). [a]RT D +59.3 (c 1.43, MeOH). ESIHRMS calculated for
Figure imgf000075_0001
[M+Na]+, 1245.4914; found, 1245.4906.
2'-N-Methyl-neomycin acetate salt (171).
To a stirred suspension of Pd/C (70 mg) in 10% AcOH (1.5 mL) was added a solution of AB (130 mg, 0.1 1 mmol) in MeOH (3 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (1 atm) for 2 h, filtered and concentrated under reduced pressure. The residue was dissolved in aq Ba(OH)2 (3 mL) and heated to reflux for 72 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (1.2% NH4OH). The product-containing fractions were concentrated under reduced pressure and the residue was dissolved in 10% AcOH and freeze dried to give the desired product 171 in the form of its acetate salt (30 mg, 29 %). [a]RT D +41.4 (c 0.29, H20). ESIHRMS calculated for C24H49N6Oi3 [M+H]+, 629.3358; found, 629.3331.
1 ,3,6',2"',6"'-Penta-N-acetyl-2'-N-ethyl-neomycin (AC).
To a stirred solution of AA (150 mg, 0.18 mmol) in methanol (5 mL) was added a 1 M solution of acetaldehyde in DCM (0.3 mL, 0.3 mmol) at RT. After stirring for 0.5 h at RT glacial acetic acid (31 μί, 0.55 mmol) and sodium cyanoborohydride (34 mg, 0.55 mmol) were added to the reaction mixture and stirring was continued for 2 h. The reaction was quenched with aq NaHC03 (1 mL) at RT. After stirring for 0.5 h the reaction mixture was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHCI3/MeOH/NH4OH (6:3: 1) to give AC (90 mg, 58 %). [a]RT D +58.1 (c 0.94, MeOH). ESIHRMS calculated for CssHei NeOis [M+H]+, 853.4042; found, 853.4028. 2'-N-Ethyl-neomycin acetate salt (172).
Compound AC (75 mg, 0.09 mmol) was dissolved in aq Ba(OH)2 (2 mL) and heated to reflux for 24 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (0.8% NH4OH). The product-containing fractions were concentrated under reduced pressure and the residue was dissolved in 10 % -AcOH and freeze dried to give 172 in the form of its acetate salt (22 mg, 25 %). [a]RT D +32.3 (c 0.7, H20). ESIHRMS calculated for C25H51 N6O13 [M+H]+, 643.3514; found, 643.3512.
Figure imgf000076_0001
1 ,3,6',2"',6"'-Penta-N-acetyl-2'-N-formyl-6,3',4',2",5",3"',4"'-hepta-0-acetyl-neomycin (AC).
A stirred solution of AA (500 mg, 0.61 mmol) in DMF (10 mL) was treated with pyridine (0.15 mL) at RT and cooled to 0 °C before acetic formic anhydride (72 μί, 0.91 mmol) was added. The reaction mixture was stirred for 4 h at 0 °C before it was quenched with excess of MeOH (10 mL). Then the reaction mixture was concentrated to dryness under reduced pressure and the residue was dissolved in pyridine (5 mL) and treated with acetic anhydride (5 mL) at RT. The resulting mixture was stirred for 18 h before it was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH (9: 1) to give AC (450 mg, 65 %). [a]RT D +37.6 (c 1.33, MeOH). ESIHRMS calculated for C48H7oN6026Na [M+Na]+, 1169.4237; found, 1 169.4248.
2'-Deamino-neomycin acetate salt (173).
A stirred solution of AC (400 mg, 0.35 mmol) in DCM (8 mL) was treated with Et3N (2 mL) at RT before POCI3 was added dropwise. The reaction mixture was stirred for 4 h at RT before it was quenched with aq NaHCC (5 mL). Then it was concentrated to dryness under reduced pressure and the residue was dissolved in acetone (50 mL). The precipitate was filtered off and the filtrate was concentrated under reduced pressure. The residue was dissolved in a mixture of toluene and MeCN (2: 1 , 16 mL) and the solution was degassed by sparging with argon before tris(trimethylsilyl)silane (1 mL, 3.5 mmol) was added at RT. Then the reaction temperature was raised to 90 °C and to this heated solution was added a solution of AIBN (12 mg, 0.07 mmol) in MeCN (1 mL) dropwise. The resulting mixture was stirred for 2 h at 90 °C before it was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH (9: 1) to give crude AD (170 mg, 44%) that was used for next reaction without further purification and characterization. Compound AD (100 mg, 0.09 mmol) was dissolved in aq Ba(OH)2 (2 mL) and heated to reflux for 24 h. The reaction mixture was acidified with 10% AcOH and then purified by Sephadex C-25 column chromatography (0.8 % -NH4OH). The product-containing fractions were concentrated under reduced pressure and the residue was dissolved in 10% AcOH and freeze dried to give 173 in the form of its acetate salt (22 mg, 28 %). [a]RTD +23.2 (c 0.43, H20). ESIHRMS calculated for C23H46N5O13 [M+H]+, 600.3092; found, 600.3076.
For a general synthetic scheme see Fig. 5.
Particular embodiments encompass the compounds AE, AF, AG and AH of Fig. 5 and their use as an intermediate of an aminoglycoside drug derivative.
1 ,3,6 2'^6"'-Penta-N-acetyl-1 ,3,6 2' 6"'-penta-N-tert-butoxycarbonyl-2'-azido-6,3',4',2",5",3"',4"'- hepta-0-acetyl-2'-deamino-neomycin (AE).
A stirred solution of neomycin sulfate (10 g, 14.04 mmol) in water (100 mL) was treated with cone aqueous NH4OH (50 mL) then concentrated under vacuum to yield neomycin free base as an off white solid. This solid was taken up in a mixture of water and methanol (3: 1 , 120 mL) and treated with 1 N HCI (14 mL) at RT before acetic anhydride (150 mL) was added dropwise over a period of 6 h and stirring was continued for additional 24 h. At this stage LCMS analysis of the reaction mixture showed incomplete reaction, consequently the reaction mixture was concentrated under reduced pressure and the residue was re-subjected to the same sequence of reaction conditions after which LCMS analysis of the reaction mixture showed penta-acetyl neomycin as a major product. The reaction mixture was concentrated to dryness under reduced pressure and the residue was dissolved in MeOH (200 mL), the precipitate was filtered off and the filtrate was concentrated under reduced pressure. The residue was dissolved in a mixture methanol and water (2:3, 120 mL), treated with potassium carbonate (5.8 g, 42.1 mmol) at RT and cooled to 0 °C before imidazole-1- sulfonyl azide hydrochloride (4.4 g, 21.0 mmol) and copper (II) sulfate (224 mg, 1.4 mmol) were added. The reaction mixture was allowed to warm to RT and stirring was continued for 18 h after which it was concentrated to dryness under reduced pressure, dissolved in methanol (200 mL), the precipitate was filtered off and the filtrate concentrated under reduced pressure. The residue was dissolved in THF (100 mL) and (Boc)20 (45.9 g, 210.6 mmol) and DMAP (8.6 g, 70.2 mmol) were added followed by heating to reflux for 48 h. The reaction mixture was concentrated to dryness under reduced pressure and the residue was dissolved in pyridine (50 mL) and treated with acetic anhydride (50 mL) at RT. The resulting mixture was stirred for 18 h before it was concentrated to dryness under reduced pressure. The residue was dissolved in ethyl acetate (500 mL) and washed with water (2 x 250 mL) and brine (2 x 250 mL). The organic layer was dried over Na2SC>4, concentrated under reduced pressure, and the residue was purified by column chromatography on silica gel eluting with ethyl acetate/hexane (1 : 1) to give AE (3 g, 13 %). [a]RT D +56.2 (c 0.4, MeOH). ESIHRMS calculated for C72Hio8N8035Na [M+Na]+, 1667.6815; found, 1667.6802.
1 ,3,6',2"',6"'-Penta-N-tert-butoxycarbonyl-neomycin (AF).
To a stirred solution of AE (1.1 g, 0.67 mmol) in MeOH (1 1 mL) was added NaOMe (867 mg, 16.1 mmol) at RT. After stirring for 3 h the reaction mixture was neutralized with Amberlyst (H-form), filtered, and concentrated under reduced pressure. Then the residue was dissolved in a mixture of THF and water (2: 1 , 15 mL) and trimethylphosphine (1 M in THF, 1.3 mL) was added at RT. After stirring for 3 h at 60 °C the reaction mixture was concentrated to dryness under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHC /MeOH (7: 1) to give AF (400 mg, 53 %). [a]RT D +30.0 (c 0.48, MeOH). ESIHRMS calculated for C48H87N6023 [M+H]+, 11 15.5823; found, 1 115.5814.
1 ,3,6',2"',6"'-Penta-N-tert-butoxycarbonyl-2'-N-(2-azidoacetyl)-neomycin (AG).
To a stirred solution of AF (150 mg, 0.13 mmol) and 2-azidoacetic acid (27 mg, 0.27 mmol) in THF (1.5 mL) was added EDC.HCI (51 mg, 0.27 mmol), HOBt (36 mg, 0.27 mmol), and DIPEA (1 16 μί, 0.67 mmol) at RT. After stirring for 2 h at RT the reaction mixture was quenched with aq HCI (30 mL) and extracted with DCM (3 x 30 mL). The combined DCM layer was dried over Na2S04 and concentrated under reduced pressure and the residue was purified by column chromatography on silica gel eluting with CHCI3/MeOH (9: 1) to give AG (110 mg, 68%). [a]RT D +32.3 (c 1.16, MeOH). ESIHRMS calculated for C5oH87N9024Na [M+Na]+, 1220.5762; found, 1220.5723.
2'-N-(2-Aminoacetyl)-neomycin acetate salt (175).
To a stirred suspension of Pd(OH)2/C (50 mg) in 10% AcOH (1 mL) was added a solution of AG (100 mg, 0.08 mmol) in dioxane (2 mL) at RT. The reaction mixture was stirred under a hydrogen atmosphere (1 atm) for 2 h, filtered and concentrated under reduced pressure. The residue was dissolved in a mixture of TFA/Water/Anisole (90:7:3, 2 mL) and stirred for 1 h at RT before it was concentrated to dryness under reduced pressure. The residue was purified by Sephadex C-25 column chromatography (0.8% NH4OH). The product-containing fractions were concentrated under reduced pressure and the residue was dissolved in 10% AcOH and freeze dried to give the desired product 175 in the form of its acetate salt (40 mg, 47 %). [a]RT D +34.7 (c 0.96, H20). ESIHRMS calculated for C25H50N7O14 [M+H]+, 672.3416; found, 672.3400.
1 ,3,6',2"',6"'-Penta-(t-butyloxycarbonyl)-2'-N-formamido-neomycin (AH).
To a cooled solution of AF (75 mg, 67.3 μηιοΙ) in CH2CI2 (2 mL) and pyridie (54 μΙ_, 673.0 μηιοΙ), acetic formic anhydride (16 μΙ_, 101 μηιοΙ) was added dropwise. The reaction mixture was stirred in ice bath for 1 h. The reaction mixture was diluted withmethanol (3 mL), and saturated solution of NaHCC and stirred at RT. After 1 h, the reaction mixture was diluted with ethyl acetate and washed with brine. The organic layer was dried on Na2S04, concentrated and purified by column chromatography on silica gel (16: 1 ethyl acetate/ methanol) to give AH as a white solid (60 mg, 78%). ESIHRMS calculated for C^HseNeC^ [M+Na]+, 1165.5591 ; found, 1165.5598. [a]21 D +30.97 (c 1.75, MeOH).
2'-N-Formamido-neomycin (182).
Compound AH (50 mg, 77.8 μηιοΙ) was treated with a solution of trifluoroacetic acid: anisole: water (4 mL, 100: 3: 7) at RT for 45 min. After stirring for 45 min, the reaction mixture was concentrated to dryness under reduced pressure and the residue was purified by Sephadex C-25 column chromatography (0.5% ammonium hydroxide). The product was dissolved in 10% aq. AcOH and freeze dried and to give 182 as the penta-acetate salt (18 mg, 44%). ESIHRMS calculated for C25H48N6Oi4 [M+Na]+, 679.3126; found, 679.3156. [a]21 D +30.3 (c 0.75, H20). In the 1H-NMR spectrum the formamide is a mixture of two rotamers in the ratio of 1 : 0.4. Biological testing of 2' C modified compounds (position B).
Modifications at C2' result in enhanced potency against Mycobacteria, as well as full protection against acquired AAC(2') antimicrobial resistance in gram-negatives. Furthermore, various modifications at the 2' position are demonstrated to retain the full antibacterial potency of the parent compound while increasing target specificity for bacterial versus human rRNA, a surrogate for increased drug safety.
The following tables show results from different experiments aimed at determining activity and selectivity, where applicable, of the exemplary compounds:
Table 1 (Example 3). Selected MICs ^g/ml) against clinical isolates (Institute of Medical Microbiology, Zurich)
MRSA E coli
Compound AG038 AG039 AG042 AG044 AG001 AG055 AG003 Paromomycin 4 >256 >256 4-8 16-32 8 8-16
2'-NHMe (1 15) 8 >128 >128 4 16 16 16
2'-NHEt (127) 8 >128 >128 4-8 16 16 16
2'-NHPr (128) 8-16 >128 >128 4 16 16 16
Neomycin B 0.25 128 128 0.5-1 4 1 1
2'-H (173) 1 ≥32 ≥ 32 nd 2 2 1-2
2'-OH (1 19) 2 >128 >128 2 2-4 2-4 2-4
2'-NHMe (171) 0.25- > 32 > 32 nd 1 1 1
0.5
2'-NHEt (172) 0.5 > 32 > 32 nd 1-2 1 1
2'-NHCHO (182) 2-4 > 32 > 32 nd 4-8 2 4-8
2'-NHAc (183) >32 > 32 > 32 nd > 32 > 32 > 32
2'-NHCOCH2NH2 (175) 4 > 32 > 32 nd 16 16 32
Table 2 (Example 3). Selected MICs ( g/ml) against wild type and resistant strains of E coli carrying the AAC(2') resistance determinant
Strain AG006 AG 104 AG 106
Resistance Mechanism Wild type Wild type AAC(2')
Paromomycin 2 2 >64s
2'-NHMe (115) nd 2-4 4-8
Neomycin B 0.25-0.5 0.5-1 8
2'-H (173) 1 0.5-1 1
2'-OH (119) 0.5 1 1
2'-NHMe (171) 0.25 0.5 0.5 2'-NHEt (172) 0.5 0.5 0.5
2'-NHCHO (182) 2 2-4 2
2'-NHAc (183) 64 128 128
2'-NHCOCH2NH2 (175) 8 16 16-32
Table 3 (Example 3). Selectivity for Binding to the Bacterial Ribosome over the Mitochondrial, Mutant Mitochondrial, and Cytosolic Ribosomes
Compound Mitochondrial Mutant Mitochondrial Cytosolic
Paromomycin 2506 267 471
2'-NHMe (1 15) 3151 1134 1264
2'-NHEt (127) 4715 1804 918
2'-NHPr (128) 3066 763 425
Neomycin B 123 9.1 1045
2'-H (173) 831 31 3188
2'-OH (1 19) 1222 94 3667
2'-NHMe (171) 483 117 4000
2'-NHEt (172) 850 111 311 1
2'-NHCHO (182) 463 108 1093
2'-NHAc (183) 18 5.2 28
2'-NHCOCH2NH2 67 153 155
(175)
Table 4 (Example 3)
MIC ( g/mL) IC50 (μΜ)
E. coli M. abscessus
cmp 6' 2' WT AAC(2' AAC(2 ATC Clin. Ba Mit Cyt d ) ') C Isol. c AG106 pH434
PAR OH NH2 1-2 > 64 > 64 8 32 0.0 14 31
4 0
1 15 OH /V-met 2-4 4 8 16 32 0.0 95 38
3
127 OH N-et 2 2 4 32 64 0.0 14 28
3 1
128 OH N- 2 2 4 32 64 0.0 15 21
prop 5 3
NEO NH2 NH2 1 8 > 64 16 16 0.0 4.3 35
4
173 NH2 H 1 1 8 4 8 0.0
3 22 85
1 19 NH2 OH 0.5- 1 4 2 4 0.0
1 3 36 108
NH2 /V-met 0.5 0.5 4 0.25 0.5 0.0
171 1 4.7 37
NH2 N-et 0.5- 0.5 1 0.25 0.5 0.0
172 1 1 11 43
NH2 N- 2 2 8-16 16 32 0.1
182 formyl 2 54 127
Modifications at C2' result in enhanced potency against Mycobacteria, as well as full protection against acquired AAC(2') antimicrobial resistance in gram-negatives. Furthermore, various modifications at the 2' position are demonstrated to retain the full antibacterial potency of the parent compound while increasing target specificity for bacterial versus human rRNA, a surrogate for increased drug safety.
Table 5 (Example 3) antibacterial activity of 2'-modified compounds against E. coli strains with acquired AAC(2') resistance and Mycobacteria with intrinsic AAC(2') resistance (MIC in μg/ml)
Figure imgf000082_0001
19977 isolate
WT AAC(2')- AAC(2')- arm WT WT Aeis2
la Ib
PAR 1-2 > 64 > 64 2 1 8 4 32
118 32 > 128
115 2-4 4 8 4-8 4-8 16 0.5 32
127 2 4 4-8 4 32 0.5 64
128 2 4 4-8 2 32 1 64
NEO 0.5- 8 > 64 0.25-0.5 16 4 16 1 0.5
173 1 1 8 1 0.25 4 0.125 8
0.5- 1 4 1 2 0.125 4
119 1 0.5
171 0.5 0.5 4 1 < 0.063 0.25 0.063 0.5
0.5- 0.5 1 1 0.25 0.063 0.5
172 -1 < 0.063
182 2 2 8-16 8 1 16 0.5 32
8- 16-32 16
175 16 0.25
183 128 128 128-256 8
RIB 2 128 > 128 2 8 128 32 128
034 128 > 256
64-
062 128 > 128
>
064 128 > 128 100 8 > 128 32 32-64 32 8 64
16- 32 64-128 128 32 > 128
037 32 64
GEN 0.5 2-4 > 128 1 2-4 2
0.5- 8-16 8 > 128 1 1 4
PLZ 1 0.25
AMK 2 2 2 > 128 0.5 1 0.125-0.25 2
PAP, paromomycin; NEO, neomycin B; RIB, ribostamycin; GEN, gentamicin, for comparison only; PLZ, plazomicin, for comparison only
Table 5 (Example 3)
Example 4:
Further experiments to characterize exemplary compounds have rendered the following data:
Table 1 (Example 4)
Figure imgf000084_0001
Figure imgf000085_0001
194 2 0.5 8-16 2 1
195 8 2-4 64 8 4
197 2-4 1 32 2 1-2
198 8 2-4 16 8 4
206 8
3"- modif.
042 1 0.5 > 32 1-2 1-2 2-4
043 2 1 > 64 2 1 4
083 2 1 > 64 16 2 16-32
093 2 1-2 > 64 16 2 8
ATCC25922; AG215, Klebsiella pneumonia; AG220, Pseudomonas aeruginosa ATCC27853; AG225, Acinetobacter baumannii pittii; AG290, Enterobacter cloacae; SZ380, Mycobacterium smegmatis.
Table 2 (Example 4) Antibacterial activity of 3', 4', and 5"-modified compounds against E. coli strains with defined resistance determinants (MIC in μg/ml)
Figure imgf000086_0001
079 0.5 > 32 4 > 64 1 1 > 64 1-2
116 0.5 > 32 0.5 > 64 1 1 > 64 2-4
187 0.5-1 4-8 0.5-1 8 1 2 2 2
194 1 64-128 2 2 2 2 4-8 2-4
NEO 1 > 128 64 > 64 32-64 1 > 64 64
140 1 > 32 1 32 1 1 64 1
RIB 2 > 128 128-256 32-64 > 128 4 > 128 > 128
129 32 > 64 64
130 4 > 64 > 64 > 128 > 64 16 > 128 > 128
PAR, paromomycin; LIV, lividomycin B; NEO, neomycin B; RIB, ribostamycin
Table 3 (Example 4) Antibacterial activity against clinical isolates (MIC in μg/ml)
Figure imgf000087_0001
Figure imgf000088_0001
> 128 > 128
> 128 > 128
32 64
128 128
64 64
> 64 > 64
> 32 > 32
> 32 > 32
> 32 > 32
> 128 > 128
4 4
≥128 128
>128 >128
>128 >128
32-64 32
> 128 > 128
Figure imgf000089_0001
DC 130 32 32 32 64 128 > 128 > 128 > 128 > 128
4'- modif.
DC094 8 8-16 8 4 16 > 128 > 128 > 128 > 128
DC073 16-32 16-32 16-32 32 32-64 32-64 64
DC079 4 4 2-4 2 2 2 2 8 8
DC1 16 4-8 4-8 4-8 2 1 2 2 32 32
DC 187 2 2 1 1-2 1 2 8-16 8
DC 190 32 16 > 64
DC 193 4 4 > 64
DC 194 2-4 1-2 16-32
DC195 8 4
DC 197 2-4 1 16
DC 198 16 4 32
DC206 8 8 64-128
PAR, paromomycin; LIV, lividomycin B; NEO, neomycin B; RIB, ribostamycin; MRSA, methicillin resistant Staphylococcus aureus; P. aer., Pseudomonas aeruginosa
Table 4 (Example 4). Inhibition of ribosomal in-vitro translation and relative target specificity bacterial vs. human drug targets
IC50 Target specificity
(μΜ) bacterial vs.
Bacterial Mitoch. Cytosolic Rabbit Mitoch. Mitochondrial Cytosolic
A 1555G
PAR 0.04 140 31 21 15 +++++ ++
LIV 0.04 109 53 25 25 +++++ ++++
NEO 0.04 4.3 35 49 0.4 low +++
Figure imgf000091_0001
Figure imgf000092_0001
5"- modif.
DC047 0.10 325 293 157 119 +++++ +++++
DC048 0.09 76 50 50 34 ++ ++
DC 137 0.04 144 90 29 30 +++++ +++++
DC141 0.03 70 89 29 28 +++++ +++++
DC 165 0.30 195 39 22 13 ++ low
DC 153 0.12 144 132 57 39 ++++ +++
DC129 1.2 298 307 169 376 low low
DC 130 0.24 364 359 152 190 ++++ ++++
4'- modif.
DC079 0.03 160 69 36 46 +++++ +++++
DC1 16 0.06 70 94 40 30 ++++ ++++
DC 187 0.08 155 44 34 34 +++++ +
DC 190 0.78 1056 630 197 449 ++++ ++
DC 193 0.42 91 64 48 59 low low
DC 194 0.04 275 102 45 48 +++++ +++++
DC 195 0.32 981 917 1302 759 +++++ +++++
DC 197 0.05 48 79 31 39 +++ ++++
DC 198 0.15 48 88 50 49 (+) ++
DC206 0.10 290 178 206 +++++ ++++
PAR, paromomycin; LIV, lividomycin B; NEO, neomycin B; RIB, ribostamycin; Bacterial, Mycobacterium smegmatis ribosomes; Mitochondrial/Cytosolic, ribosomes with a human mitochondrial/cytosolic decoding site, respectively [Ref]; Rabbit, mammalian cytosolic ribosomes with a decoding site identical to human cytosolic ribosomes; A1555G, human mitochondrial decoding site with a single point mutation causing hypersusceptibility to aminoglycoside antibiotics.
Table 5 (Example 4). Antibacterial activity of bicyclic and 6'-modified compounds against E. coli strains with defined resistance determinants (MIC in μg/ml)
Figure imgf000094_0001
Figure imgf000095_0001
PAR, paromomycin; NEO, neomycin B.
As will be understood by one of ordinary skill in the art, each embodiment disclosed herein can comprise, consist essentially of, or consist of its particular stated element, step, ingredient or component. Thus, the terms "include" or "including" should be interpreted to recite: "comprise, consist of, or consist essentially of." As used herein, the transition term "comprise" or "comprises" means includes, but is not limited to, and allows for the inclusion of unspecified elements, steps, ingredients, or components, even in major amounts. The transitional phrase "consisting of" excludes any element, step, ingredient or component not specified. The transition phrase "consisting essentially of" limits the scope of the embodiment to the specified elements, steps, ingredients or components and to those that do not materially affect the embodiment. As used herein, a material effect would cause a statistically significant reduction in the antibacterial activity of the compounds disclosed herein.
Unless otherwise indicated, all numbers used in the specification and claims are to be understood as being modified in all instances by the term "about." Accordingly, unless indicated to the contrary, the numerical parameters set forth in the specification and attached claims are approximations that may vary depending upon the desired properties sought to be obtained by the present invention. At the very least, and not as an attempt to limit the application of the doctrine of equivalents to the scope of the claims, each numerical parameter should at least be construed in light of the number of reported significant digits and by applying ordinary rounding techniques. When further clarity is required, the term "about" has the meaning reasonably ascribed to it by a person skilled in the art when used in conjunction with a stated numerical value or range, i.e. denoting somewhat more or somewhat less than the stated value or range, to within a range of ±20% of the stated value; ±19% of the stated value; ±18% of the stated value; ±17% of the stated value; ±16% of the stated value; ±15% of the stated value; ±14% of the stated value; ±13% of the stated value; ±12% of the stated value; ±1 1 % of the stated value; ±10% of the stated value; ±9% of the stated value; ±8% of the stated value; ±7% of the stated value; ±6% of the stated value; ±5% of the stated value; ±4% of the stated value; ±3% of the stated value; ±2% of the stated value; or ±1 % of the stated value.
Notwithstanding that the numerical ranges and parameters setting forth the broad scope of the invention are approximations, the numerical values set forth in the specific examples are reported as precisely as possible. Any numerical value, however, inherently contains certain errors necessarily resulting from the standard deviation found in their respective testing measurements.
The terms "a," "an," "the" and similar referents used in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. Recitation of ranges of values herein is merely intended to serve as a shorthand method of referring individually to each separate value falling within the range. Unless otherwise indicated herein, each individual value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., "such as") provided herein is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention otherwise claimed. No language in the specification should be construed as indicating any non-claimed element essential to the practice of the invention.
Groupings of alternative elements or embodiments of the invention disclosed herein are not to be construed as limitations. Each group member may be referred to and claimed individually or in any combination with other members of the group or other elements found herein. It is anticipated that one or more members of a group may be included in, or deleted from, a group for reasons of convenience and/or patentability. When any such inclusion or deletion occurs, the specification is deemed to contain the group as modified thus fulfilling the written description of all Markush groups used in the appended claims.
Certain embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Of course, variations on these described embodiments will become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventor expects skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.
The particulars shown herein are by way of example and for purposes of illustrative discussion of the preferred embodiments of the present invention only and are presented in the cause of providing what is believed to be the most useful and readily understood description of the principles and conceptual aspects of particular embodiments of the invention. In this regard, no attempt is made to show structural details of the invention in more detail than is necessary for the fundamental understanding of the invention, the description taken with the drawings and/or examples making apparent to those skilled in the art how the several forms of the invention may be embodied in practice.
Definitions and explanations used in the present disclosure are meant and intended to be controlling in any future construction unless clearly and unambiguously modified in the examples or when application of the meaning renders any construction meaningless or essentially meaningless. In cases where the construction of the term would render it meaningless or essentially meaningless, the definition should be taken from Webster's Dictionary, 3rd Edition or a dictionary known to those of ordinary skill in the art, such as the Oxford Dictionary of Biochemistry and Molecular Biology (Ed. Anthony Smith, Oxford University Press, Oxford, 2004).
In closing, it is to be understood that the embodiments of the invention disclosed herein are illustrative of the principles of the present invention. Other modifications that may be employed are within the scope of the invention. Thus, by way of example, but not of limitation, alternative configurations of the present invention may be utilized in accordance with the teachings herein. Accordingly, the present invention is not limited to that precisely as shown and described.

Claims

1. A compound characterized by a general formula (100)
Figure imgf000098_0001
(100), wherein
i. A is selected from
- CH2OH, CH2NH2 and CH2NHR0, or from
- C R1 2OH, C R1 2NH2 and C R1 2NHR°, or from
- ( )-CH(OH)R1, ( )-CH(NH2)R1, ( )-CH(NHR°)R1, (Sj-CH(OH)R1, (S)-CH(NH2)R1 , and (S)- CH(NHR°)R1, wherein
R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl,
wherein
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
G is F and L is H or Ci to C4 alkyl;
or
ii. A and L are connected via a moiety -CRV and L is -O- or -CR52~,
wherein each R5 is independent!y being from H, F and R1, or R52 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and
A is selected from (K)-CH(OH), (R)~CH(NH2), (,i?)-CH(NHR°), (S)-CH(OH)( (S)~CH(NH2), (S)- CH(NHR°), (R)-C(OH)R1 , (K)-C(NH2)R \ ( ?)-C(NHR°)R1. (Sj-C(OH)R\ (S)-C(NH2)R \ and (S)-C(NHR°)R1, (A and L together form a four-membered moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring) wherein R° is selected from the group consisting of methyl, ethyi, 2-arninoethyi, 2- hydroxyethyl, CH2CH2NH R, CH2CH2F, CH2CHF2, (CHzJnCFs, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyi. hydroxymeihyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2),CH2F, (CH2)„CHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C alky I,
·· and G is H,
or
iii. A and L are connected via a moiety -CR5- and L is O, S or CR5 2, and G is H
wherein each R5 is independently being from H, F and R1, or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); (particularly wherein L is O) and
A is selected from ( )-CH(OH), ( )-CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)- CH(NHR°), ( )-C(OH)R1, ( )-C(NH2)R1 , ( )-C(NHR°)R1, (Sj-C(OH)R1 , (S)-C(NH2)R1, and (S)- C(NHR°)R1, (A and L together form a propylene or O-ethylene moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl,
or
iv. A and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I, and G is H
wherein three or four members proximal to the 4' carbon are -CR5 2-, with one member optionally selected from -0-, -S-, -SO-, -S02-, and -NHR°-
(particularly wherein L is O, and L is connected to the 5' carbon via -(CR5 2)4- ), wherein each R5 is independently being from H, F and R1, or R52 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR0-, thereby forming a lactone, thiolactone or lactame);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and wherein optionally, two adjacent carbon members form a double bond -CR5=CR5-, and the member positioned proximal to the 5' carbon of ring I A is selected from (ft)-CH(OH), (R)- CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)-CH(NHR°), ( )-C(OH)R1, (R)- C(NH2)R1, ( )-C(NHR°)R1, (Sj-C(OH)R1, (S)-C(NH2)R1, and (S)-C(NHR°)R1,
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl,
and wherein
a. for i-iv, Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000100_0001
wherein Ra designates the bond linking the moiety to moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2,
CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, and amino- substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V- morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000101_0001
wherein Rw designates the bond linking the moiety to moiety (200) or (201), or b. for i-ii, Rw is H and Rz is characterized by a general formula (400), (401), or (402):
Figure imgf000101_0002
wherein RA designates the bond linking the moiety to moiety (100), and T is OH or H, and K2 and K6 are selected from OH and NH2, or
c. for i-ii, Rw and Rz are both H,
with the proviso for i-ii, that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and Rw is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and R" is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and R" is H and Rz is H;
- A is CH2OH, B is 2'-N-ethyl, Rz is H, R" is (200) and D is OH;
- A is CH2NH2, B is OH, Rz is H, R" is (200) and D is OH.
and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyI, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyl (particularly a Ci to C3 alkyl bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, - CON(OH)(CH2)2NH2), (2 ,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3 )-2,5-dihydroxy-4- aminopentanoyl.
2. The compound according to claim 1 being characterized by a general formula (100)
Figure imgf000102_0001
(100), wherein
A is selected from
- CH2OH, CH2NH2 and CH2NHR°, or from
- C R1 2OH, C R1 2NH2 and C R1 2NHR°, or from
- ( )-CH(OH)R1 , ( )-CH(NH2)R1 , ( )-CH(NHR°)R1 , (Sj-CH(OH)R1 , (S)-CH(NH2)R1 , and (S)- CH(NHR°)R1 , wherein
R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2-hydroxyethyl, CH2CH2NH R, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl,
wherein
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
G is F and L is H or Ci to C4 alkyl;
or
- A and L are connected via a moiety -CRV and L is -Q- or -CRV.
wherein each Rs is independently being from H, F and R1 , or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and
A is selected from ( )-CH(OH), (R)-CH(NH2). ( )-CH( HR0), (Sj-CH(OH), (S)-CH(NH2), (S)~ CH(NHR°), ( ?)-C(OH)R'! , ( )~C(NH2)R\ (RVC( HR0)R\ (S -C(OH)R1 , (S)~C(NH2)R\ and (S)-C( HR°)R1 , (A and L together form a four-membered moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring}
wherein R° is selected from the group consisting of methyl ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NH R, CH2GH2F, CH2CHF2( (CH2)nCF3i and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyi, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CHsNHR. iCH2)nCH2F, (CH2)nCHF2l (CH2)RCF3l wherein n is 1 or 2. and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyi,
and G is H,
and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyi, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyi, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyi (particularly a Ci to C3 alkyi bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl, and
a. Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000104_0001
wherein Ra designates the bond linking the moiety to moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CONH2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, and amino- substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V- morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000104_0002
wherein Rw designates the bond linking the moiety to moiety (200) or (201), or
w is H and Rz is characterized by a general formula (400), (401), or (402):
Figure imgf000104_0003
wherein RA designates the bond linking the moiety to moiety (100), and T is OH or H, and K2 and K6 are selected from OH and NH2,
c. or Rw and Rz are both H,
with the proviso that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and R3 is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and R3 is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and R3 is H and Rz is H;
- A is CH2OH, B is 2'-N-ethyl, Rz is H, R3 is (200) and D is OH;
- A is CH2NH2, B is OH, Rz is H, R3 is (200) and D is OH.
3. The compound according to claim 1 being characterized by a general formula (100)
Figure imgf000105_0001
(100), wherein
A and L are connected via a moiety -CR5- and L is O, S or CR5 2, and G is H
wherein each R5 is independently being from H, F and R1, or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); (particularly wherein L is O) and
A is selected from ( )-CH(OH), ( )-CH(NH2), ( )-CH(NHR0), (Sj-CH(OH), (S)-CH(NH2), (S)- CH(NHR°), ( )-C(OH)R1, ( )-C(NH2)R1 , ( )-C(NHR°)R1, (Sj-C(OH)R1 , (S)-C(NH2)R1, and (S)- C(NHR°)R1, (A and L together form a propylene or O-ethylene moiety substituted by oxygen or amine nitrogen on the carbon in A, and optionally substituted in any other position of the bridge connecting carbon 4 and 5 of the ring, forming a five membered ring)
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyi, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyi, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)N H2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyi (particularly a Ci to C3 alkyi bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl, and
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000106_0001
wherein Ra designates the bond linking the moiety to the oxygen designated OR" of moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CON H2, CON HOH, and amino- and/or hydroxy-substituted Ci to Ce alkyi, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)N H2 , and amino- substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V- morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000107_0001
wherein Rw designates the bond linking the moiety to the carbon designated W of moiety (200) or (201 ).
4. The compound according to claim 1 being characterized by a general formula (100)
Figure imgf000107_0002
(100), wherein
A and L together form a five-membered bridge connecting the 4' and 5' carbon of ring I, and G is H
wherein three or four members proximal to the 4' carbon are -CR5 2-, with one member optionally selected from -0-, -S-, -SO-, -S02-, and -NHR°-
(particularly wherein L is O, and L is connected to the 5' carbon via -(CR5 2)4- ),
wherein each R5 is independently being from H, F and R1 , or R5 2 signifies an oxygen atom connected to the C of one moiety -CR5- in the chain by a double bond (-CR5- is a carbonyl - CO-, particularly a carbonyl adjacent to an -0-, -S-, or NHR0-, thereby forming a lactone, thiolactone or lactame);
with the proviso that R5 is not F on a carbon linked to a heteroatom (selected from O, N, S); and wherein optionally, two adjacent carbon members form a double bond -CR5=CR5-, and the member positioned proximal to the 5' carbon of ring I A is selected from (f?)-CH(OH), (R)- CH(NH2), ( )-CH(NH R0), (Sj-CH(OH), (S)-CH(NH2), (S)-CH(NHR°), ( )-C(OH)R1 , (R)- C(NH2)R1 , ( )-C(NHR°)R1 , (Sj-C(OH)R1 , (S)-C(NH2)R1 , and (S)-C(NHR°)R1 ,
wherein R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NH R, CH2CH2F, CH2CHF2, (CH2)nCF3, and each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyl, and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyi, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyi, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)N H2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyi (particularly a Ci to C3 alkyi bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl, and
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000108_0001
wherein Ra designates the bond linking the moiety to the oxygen designated OR" of moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CON H2, CON HOH, and amino- and/or hydroxy-substituted Ci to Ce alkyi, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)N H2 , and amino- substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V- morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000109_0001
wherein Rw designates the bond linking the moiety to the carbon designated W of moiety (200) or (201).
5. The compound according to any one of the preceding claims, wherein the compound is
characterized by the general formula (1 10), particularly (1 11)
Figure imgf000109_0002
wherein A, B, D, E, G, L, Q and W have the same meanings as indicated above.
The compound according to any one of the preceding claims, wherein the compound characterized by the general formula (120), particularly (121)
Figure imgf000109_0003
(120) (121)
wherein A, B, D, E, G, L and Q have the same meaning as indicated above.
7. A compound that is described by a general formula (101), particularly by (102) or (102a)
Figure imgf000110_0001
Figure imgf000110_0002
^ n (102a)
V is selected from H, OH, NH2, NHR and NHR2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH,
(CH2)nNH2, (CH2)nF with n being 2, 3 or 4,
wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to C6 alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, unsubstituted or amino-substituted or hydroxy-substituted Ci to C4 alkyl, COCH2NH2;
COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
particularly with the proviso that Rx is not methyl when U is O, V is H, B is NH2 and D is OH; or by a general formula (101'), particularly by (102') or (102a')
Figure imgf000111_0001
Figure imgf000111_0002
wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to C6 alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
or by a general formula (101"), particularly by (102") or (102a")
Figure imgf000111_0003
Figure imgf000112_0001
V and V independently are selected from H, OH, NH2, NHR and NHR2 with R being an amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH, (CH2)nNH2, (CH2)nF with n being 2, 3 or 4,
wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl, and wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
8. The compound according to claim 7 that is described by a general formula (101), particularly by (102) or (102a)
Figure imgf000112_0002
(101) (102)
Figure imgf000113_0001
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
V is selected from H, OH, NH2, NHR and NHR2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH, (CH2)nNH2, (CH2)nF with n being 2, 3 or 4,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, unsubstituted or amino-substituted or hydroxy-substituted Ci to C4 alkyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
and wherein D, E, Q and W, where appropriate, have the meaning indicated above, particularly with the proviso that Rx is not methyl when U is O, V is H, B is NH2 and D is OH.
9. The compound according to claim 8, wherein the compound is described by a general
formula (103), particularly by (104) or (104a)
Figure imgf000114_0001
(104a)
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR0, and the other one is H, wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
W, where appropriate, has the same meaning as indicated in claim 1 , and
B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl, -CHO (formylamido), -CONH2 (ureido), and CO(CH2)nNH2with n selected from 1 (glycinyl), 2 and 3, lysinyl and arginyl, particularly B is NHR2, and R2 is an unsubstituted methyl, ethyl, n- or iso-propyl)
and D is OH or
B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or
- D is selected from NH-CHO and NH-CONH2 and B is NH2.
10. The compound according to any one of the previous claims 1 ,2, 5 or 0, wherein the
compound is described by a general formula (105), particularly by (106) or (106a)
Figure imgf000115_0001
(106a)
wherein
one of Y and Y' is selected from OH, NH2 and CH2NHR°, and the other one is H, wherein R° has the same meaning as indicated in claim 1 , particularly one of Y and Y' is selected from
OH, NH2 and CH2NHR°wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2- hydroxyethyl, and
the other one of Y and Y' is H or R1 ,
wherein each R1 independently of any other R1 has the meaning defined in claim 1 ,
- particularly Y and Y' is H or R1 and each R1 independently of any other R1 is selected from Ci to C3 substituted or unsubstituted alkyl,
more particularly one of Y and Y' is H and R1 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), or a C2 to C4 alkenyl or alkynyl moiety, particularly ethenyl (-CHCH2), ethynyl (C-CH) or allyl (CH-CHCH2), and
B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in claim 1.
1 1. The compound according to claim 0, wherein Q is OH, L is OH, G is H.
12. The compound according to any one of claim 0 or 11 , wherein Y is selected from OH, NH2 and CH2NHR° and Y' is H, wherein R° has the meaning indicated in claim 0.
13. The compound according to any one of claim 0 or 1 1 , wherein Y is H and Y is selected from OH, NH2 and CH2NH R0, wherein R° has the meaning indicated in claim 0.
14. The compound according to any one of claim 0 or 1 1 , wherein the compound is described by formula (106a) and
a. R1 is selected from methyl, ethyl, propyl and aminomethyl, Y is selected from NH2 and OH and Y is H, or
b. R1 is selected from methyl, ethyl, propyl and aminomethyl, Y is H and Y' is selected from NH2 and OH.
15. The compound according to any one of the previous claims, wherein the compound is
described by general formula (102) or (102a)
Figure imgf000116_0001
wherein
B is NH2: D is OH, Q is OH, Rx is H, U is O, V is H, E is H and
a. Y is H and Y' is OH (210) or
b. Y is OH and Y' is H (211).
or B is NH2, D is OH, Q is OH, Rx is methyl, U is O, V is H, E is H and
c. Y is H and Y' is OH (125)
d. Y is H and Y' is NH2 (139)
e. Y is OH and Y' is H (109)
f. Y is H and Y' is NH2 (150).
16. The compound according to any one of the previous claims 1 , 2, 5, 0, 0 to 0, wherein
B is NHR2, wherein R2 is selected from -CHO, -CONH2, Ci to Ce substituted or unsubstituted alkyl, and CO(CH2)nNH2 with n = 1 , 2 or 3, COCH(NH2)(CH2)4NH2, or
COCH(NH2)(CH2)3NHC(NH)NH2, particularly wherein R2 is -CHO, -CON H2 or an
unsubstituted or amino-substituted methyl, ethyl, or propyl, more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl.
17. The compound according to any one of the previous claims 1 , 2, 5, 0, 0 to 0, wherein B is NH2.
18. The compound according to any one of the previous claims 1 , 2, 5, 0, 0 to 17, wherein D is selected from NHCHO (formamide), NHCONH2 (ureide), -NHCONHOH and NHR4, wherein R4 is selected from Ci to C4 unsubstituted alkyl and Ci to C4 aminosubstituted alkyl.
19. The compound according to any one of the previous claims 16 or 17, wherein D is OH.
20. The compound according to any one of the previous claims, wherein the compound is described by a general formula (107), particularly by (108) or (108a)
Figure imgf000117_0001
- wherein W has the meaning indicated in claim 1 ,
- Y is selected from OH, NH2 and NHR0, wherein R° is selected from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR (with R being an unsubstituted Ci to C4 alkyl), and
- B is selected from H, OH, NHCHO (formamido), NHCOCH2NH2 (glycinyl), lysinyl, arginyl and NHR2,
wherein R2 is selected from unsubstituted, amino-substituted and/or hydroxy-substituted Ci to C4 alkyl, or from COR2A, wherein R2A is an amino-substituted Ci to C4 alkyl, particularly wherein
a. B is OH and Y is OH (118)
b. B is NHCH3 and Y is OH (115) c. Bis NHCH2CH3andYisOH (127)
d. B is NH(CH2)2CH3 and Y is OH (128)
e. BisHandYisNH2(173)
f. B is OH and Y is NH2(119)
g. Bis NHCH3and Y is NH2(171)
h. B is NHCH2CH3 and Y is NH2 (172)
i. Bis NHCOandYis NH2(182)
j. B is NHCOCH2NH2 and Y is NH2 (175)
21. The compound according to any one of the previous claims, wherein the compound is
a. 5"-deoxy-5"-formamidoparomomycin (137)
b. 5"-deoxy-5"-ureidoparomomycin (141)
c. 3',5"-dideoxy-5"-formamidoparomomycin (153)
22. The compound according to claim 7 that is described by a general formula (101'), particularly by (102') or (102a')
Figure imgf000118_0001
OH
(102a')
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2, Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to C6 alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl,
and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
23. The compound according to claim 22, wherein the compound is described by a general
formula (103'), particularly by (104') or (104a')
Figure imgf000119_0001
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR°, and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH2 and CH2NHR°,
wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
more particularly wherein Y is H and Y' is OH, W, where appropriate, has the same meaning as indicated in claim 1 , and
B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO, -CONH2, and D is OH or
B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or
- D is selected from NH-CHO and NH-CONH2 and B is NH2.
24. The compound according to claim 22, wherein the compound is described by a general formula (103'h), particularly by (104'h) or (104a'h)
Figure imgf000120_0001
(104a'h)
W, where appropriate, has the same meaning as indicated in claim 1 , and
B is NHSs D is OH, E is H and
a, Y is H and Y' is OH (203) or
b. Y is OH and Y: is H (204).
25. The compound according to claim 7 that is described by a general formula (101"), particularly by (102") or (102a")
Figure imgf000121_0001
(102a")
wherein one of Y and Y' is selected from OH and NH2 and the other one is H, particularly wherein Y is H and Y' is selected from OH and NH2,
Rx is selected from H, methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2- hydroxyethyl, CH2NHR (with R being a Ci to C4 alkyl), CH2F, CHF2, and CF3,
V and V independently are selected from H, OH, NH2, NHR and NHR2 with R being a amino-, hydroxyl- or fluoro-substituted Ci to C4 alkyl, particularly (CH2)nOH, (CH2)nNH2i (CH2)nF with n being 2, 3 or 4,
U is selected from O, S, CH2, SO and S02, -CH(OH)- and -CH(NH2)- wherein B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, - CONH2, substituted or unsubstituted Ci to Ce alkyl, and COR2A, wherein R2A is an amino- substituted Ci to Ce alkyl, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, and unsubstituted Ci to C4 alkyl, more particularly wherein B is NHR2, and R2 is selected from CHO, methyl, ethyl, and propyl, and wherein D, E, Q and W, where appropriate, have the meaning indicated above.
26. The compound according to claim 25, wherein the compound is described by a general
formula (103"), particularly by (104") or (104a")
Figure imgf000122_0001
(104a")
wherein one of Y and Y' is selected from OH, NH2 and CH2NHR°, and the other one is H, particularly wherein Y is H and Y' is selected from OH, NH2 and CH2NHR°,
wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl,
more particularly wherein Y is H and Y' is OH,
W, where appropriate, has the same meaning as indicated in claim 1 , and
B is NHR2, wherein R2 is selected from substituted or unsubstituted Ci to Ce alkyl (particularly R2 is an unsubstituted, amino-substituted and/or hydroxy-substituted methyl, ethyl, n- or iso-propyl), -CHO, -CONH2, and D is OH or
B is NHR2, wherein R2 is has the meaning indicated in the previous paragraph, and D is selected from NH-CHO and NH-CONH2 or
- D is selected from NH-CHO and NH-CONH2 and B is NH2.
27. The compound according to claim 25, wherein the compound is described by a general
formula (103"h), particularly by (104"h) or (104a"h)
Figure imgf000123_0001
(104a"h)
W, where appropriate, has the same meaning as indicated in claim 1 , and
B is H 2> D is OH, E is H and
a, Y is H and Y' is OH (196) or
b, Y is OH and Y! is H (199).
28. The compound according to any one of the claims 1 , 3-7, 22-27, wherein Y is H and Y' is
selected from OH, NH2 and CH2NHR0, wherein R° has the same meaning as indicated in claim 1 , particularly wherein R° is selected from methyl, ethyl, 2-aminoethyl and 2-hydroxyethyl, and
B, D, E, G, L, Q and W, where appropriate, have the same meaning as indicated in claim 1.
29. The compound according to any one of claim 1 , 3-7, 22-27, wherein Y' is OH.
30. The compound according to any one of the previous claims, wherein B is NH2.
31 . The compound according to any one of the previous claims, wherein D is OH.
32. The compound according to any one of the previous claims, wherein E is H.
33. The compound according to any one of the previous claims, wherein E is selected from (S)-4- amino-2-hydroxybutyryl, (S)-3-amino-2-hydroxypropionyl, -CON(OH)(CH2)2NH2), (2R,3S)-2- hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl.
34. The compound according to any one of the previous claims, wherein Q is OH or H, particularly wherein Q is OH.
35. The compound according to any one of the claims 30 to 34, wherein a. R1 is methyl, Y is NH2 and Y is H;
b. R1 is ethyl, Y is NH2 and Y' is H;
c. R1 is propyl, Y is NH2 and Y is H;
d. R is aminomethyl, Y is NH2 and Y' is H;
e. R1 is ethenyl, Y is NH2 and Y is H;
f. R1 is ethynyl, Y is NH2 and Y' is H;
g- R1 is allyl, Y is NH2 and Y is H;
h. R1 is methyl, Y is OH and Y' is H; (156)
i. R1 is ethyl, Y is OH and Y' is H; j- R1 is propyl, Y is OH and Y' is H; (142)
k. R1 is aminomethyl, Y is OH and Y' is H;
I. R1 is ethenyl, Y is OH and Y' is H;
m. R1 is ethynyl, Y is OH and Y is H;
n. R1 is allyl, Y is OH and Y' is H;
o. R1 is methyl, Y' is NH2 and Y is H; (166)
P- R1 is ethyl, Y' is NH2 and Y is H; q- R1 is propyl, Y' is NH2 and Y is H;
r. R1 is aminomethyl, Y' is NH2 and Y is H;
s. R1 is ethenyl, Y' is NH2 and Y is H;
t. R1 is ethynyl, Y' is NH2 and Y is H;
u. R1 is allyl, Y' is NH2 and Y is H;
v. R1 is methyl, Y' is OH and Y is H; (155)
w. R1 is ethyl, Y' is OH and Y is H; (189)
X. R1 is propyl, Y' is OH and Y is H; (143)
y- R1 is aminomethyl, Y' is NH2 and Y is H; z. R1 and Y are methyl and Y' is OH. (159).
36. A compound according to any of the previous claims for use in the therapy of bacterial
infection by systemic administration.
37. A compound according to any of the previous claims for use in the therapy of bacterial infection by systemic administration in a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U.
38. A compound according to any of the previous claims for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen selected from the genera klebsellia (particularly K. pneumoniae), Escherichia (particularly E. coli, Mycobacterium, Pseudomonas (particularly P. aeroginosa), Acinetobacter (particularly A. baumannii), Enterobacter (particularly E. cloacae), and Neisseria (particularly N. gonorrhoeae).
39. A compound according to any of the previous claims for use in the therapy of bacterial infection, wherein the infection is caused by a pathogen comprising a resistance determinant selected from AAC(6') aminoglycoside /V-acetyltransferase, AAC(2') aminoglycoside /V-acetyltransferase, APH(3') aminoglycoside O-phosphotransferase and ANT(4') aminoglycoside O- nucleotidyltransferase.
40. A compound according to any one of the claims 1 , 3-7, 22-27 for use in the therapy of bacterial infection by systemic administration.
41. A compound for use in the therapy of bacterial infection by systemic administration, wherein the compound is characterized by a general formula (100)
Figure imgf000125_0001
(100), wherein
A is CH2OH or CR1 2OH, or ( )-CH(OH)R1 or (Sj-CH(OH)R1 , wherein
each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, a C2 to C4 alkenyl and a C2 to C4 alkynyl, with each R independently being selected from the group of unsubstituted Ci to C4 alkyl,
wherein
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or G is F and L is H or Ci to C4 alkyi;
or
- A and L are connected via a moiety -CRV and L is -O- or -CRV,
wherein each R5 is independently being from H, F and R1 , and
A is (Sj-CH(OH), or (Sj-C(OH)R1
wherein each R1 is selected independently from the group consisting of methyl, ethyl, aminomethyl, hydroxymethyl, 2-aminoethyl, 2-hydroxyethyl, CH2NHR, (CH2)nCH2F, (CH2)nCHF2, (CH2)nCF3, wherein n is 1 or 2, and wherein each R is independently selected from the group of unsubstituted Ci to C4 alkyi,
- and G is H,
and wherein
B is selected from NH2, OH, H, and NHR2, wherein R2 is selected from -CHO, -CONH2, substituted or unsubstituted Ci to Ce alkyi, and COR2A, wherein R2A is an amino-substituted Ci to Ce alkyi, particularly wherein B is NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)N H2,
more particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
Q is selected from OH, NH2, F and H, particularly Q is OH or H;
E is selected from H, CO-R3, CONHR3 and CON(OH)R3, wherein R3 is H or a Ci to C6 substituted or unsubstituted alkyi (particularly a Ci to C3 alkyi bearing NH2 and/or OH moieties), particularly wherein E is selected from (S)-4-amino-2-hydroxybutyryl, (S)-3-amino-2- hydroxypropionyl, -CON(OH)(CH2)2NH2), (2f?,3S)-2-hydroxy-4,5-diamino-pentanoyl, and (2S,3f?)-2,5-dihydroxy-4-aminopentanoyl,
Rz is H or 2-aminoethyl, and Rw is characterized by a general formula (200) or (201)
Figure imgf000126_0001
wherein Rw designates the bond linking the moiety to moiety (100);
D is selected from NH2, OH, H, and NHR4, wherein R4 is selected from CHO, CON H2, CONHOH, and amino- and/or hydroxy-substituted Ci to Ce alkyl, particularly where D is NHR4 and R4 is selected from CHO, CONH2, CONHOH, COCH2NH2; COCH(NH2)(CH2)4NH2, or COCH(NH2)(CH2)3NHC(NH)NH2, and amino- substituted or hydroxy-substituted methyl, ethyl, n- or iso-propyl; more particularly where D is NHCHO or NHCONH2, and
W is selected from OH, F, H, -0(CH2)2NH2, -0(CH2)2NH(CH2)3NH2, 0-(CH2)2-/V- morpholino, 0-(CH2)2-/V-piperidono, 0-(CH2)2-N-[(CH2)2OH]2 and a moiety characterized by formula (300) or (301)
Figure imgf000127_0001
wherein Rw designates the bond linking the moiety to moiety (200) or (201), with the proviso that the molecule is not described by the following combination of parameters:
- A is CH2OH or CH2NH2, B is NH2, Rz is H and FT is (201), and D is OH, or
- A is CH2OH or CH2NH2, and B is OH, and R" is H and Rz is any one of (400), (401), and (402)
- A is CH2NH2, and B is NH2, OH or H, and Rw is H and Rz is H;
- A is CH2NH2, B is OH, Rz is H, Rw is (200) and D is OH.
42. The compound for use in the therapy of bacterial infection by systemic administration according to claim 41 , wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl.
43. The compound for use in the therapy of bacterial infection by systemic administration according to claim 41 or 42, wherein A is CR1 2OH or (Sj-CH(OH)R1, and each R1 is selected independently from the group consisting of methyl and ethyl.
44. The compound for use in the therapy of bacterial infection by systemic administration according to claim 41 to 43, wherein Q is H, and
a. A is selected from CH2OH, CR1 2OH, and (Sj-CH(OH)R1, wherein R1 is selected from the group consisting of methyl, ethyl, -CH2NH2, -CH2OH, 2-aminoethyl, and 2- hydroxyethyl, and
G is H and L is 0-RA', S-RA' or RA', with RA' being selected from H and unsubstituted, fluoro-, amino- and/or hydroxysubstituted Ci to C4 alkyl, or
G is F and L is H or Ci to C4 alkyl; or
b. A and L are connected via a moiety -CR5 2- and L is -O- or -CRV, wherein each R5 is independently being from H, F and R1, and A is (Sj-CH(OH), or (Sj-C(OH)R1 wherein R1 is selected from the group consisting of methyl, ethyl, -CH2NH2, -CH2OH, 2-aminoethyl, and 2-hydroxyethyl,
and G is H.
45. The compound for use in the therapy of bacterial infection by systemic administration according to any one of claims 41 to 44, wherein D is NCHO.
46. The compound for use in the therapy of bacterial infection by systemic administration according to any one of claims 41 to 45, wherein the compound is provided for administration to a patient carrying a mutation in the A-site of the mitochondrial ribosomal RNA selected from A1555G and C1494U.
47. The compound for use in the therapy of bacterial infection by systemic administration according to any one of claims 41 to 45, wherein the infection is caused by a pathogen selected from the genera klebsellia ('particularly K. pneumoniae), Escherichia ('particularly E. coli, Mycobacterium, Pseudomonas ('particularly P. aeroginosa), Acinetobacter ('particularly A. baumannii),
Enterobacter ('particularly E. cloacae), and Neisseria ('particularly N. gonorrhoeae).
48. A compound for use in the therapy of bacterial infection according to any one of the previous claims, wherein the infection is caused by a pathogen selected from the genus Mycobacterium, particularly by systemic administration.
49. A compound for use in the therapy of bacterial infection according to any one of the previous claims, wherein the infection is caused by a pathogen comprising an AAC(2') aminoglycoside N- acetyltransferase resistance determinant.
50. A compound as defined in any one of the claims 1 to 35, particularly claims 1 , 2, 5-21 or 28-35, wherein B is selected from H, OH, NR2, and NHR2 and R2 is -CHO, -CONH2, an unsubstituted or amino-substituted methyl, ethyl, n- or iso-propyl,
particularly wherein B is NHR2 and R2 is -CHO, methyl, ethyl, or propyl;
for use in the therapy of infection by a bacterium, wherein the bacterium comprises an AAC(2') aminoglycoside /V-acetyltransferase resistance determinant and/or the infection is caused by a pathogen selected from the genus Mycobacterium.
51. A compound according to any one of the previous claims, particularly claims 1 , 2, 5-21 or 28-35, for use in the therapy of infection by a bacterium, wherein the bacterium comprises a resistance determinant selected from
- AAC(6') aminoglycoside /V-acetyltransferase and / or
- ANT(4') aminoglycoside O-nucleotidyltransferase and / or
- APH(3') aminoglycoside O-phosphotransferase
wherein the compound is defined by a general formula (101), (102) or (102a), wherein Y' is selected from OH, NH2 and NHR°, wherein
R° is selected from the group consisting of methyl, ethyl, 2-aminoethyl, 2- hydroxyethyl, CH2CH2NHR, CH2CH2F, CH2CHF2, (CH2)nCF3, and
particularly wherein Y' is OH
more particularly wherein V is H, U is O and Y' is H,
even more particularly for use by systemic administration.
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