WO2018003988A1 - Nucleic acid and composition for treating tumors, including brain tumors - Google Patents

Nucleic acid and composition for treating tumors, including brain tumors Download PDF

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WO2018003988A1
WO2018003988A1 PCT/JP2017/024223 JP2017024223W WO2018003988A1 WO 2018003988 A1 WO2018003988 A1 WO 2018003988A1 JP 2017024223 W JP2017024223 W JP 2017024223W WO 2018003988 A1 WO2018003988 A1 WO 2018003988A1
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seq
strand sequence
sirna
modified rna
sequence
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PCT/JP2017/024223
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French (fr)
Japanese (ja)
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近藤 豊
彰一 出口
敦至 夏目
啓佑 勝島
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公立大学法人名古屋市立大学
国立大学法人名古屋大学
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Publication of WO2018003988A1 publication Critical patent/WO2018003988A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/712Nucleic acids or oligonucleotides having modified sugars, i.e. other than ribose or 2'-deoxyribose
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • A61K31/713Double-stranded nucleic acids or oligonucleotides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents

Definitions

  • the present invention relates to a nucleic acid for treating a tumor including a brain tumor (eg, glioblastoma) and a pharmaceutical composition containing the nucleic acid.
  • a brain tumor eg, glioblastoma
  • a pharmaceutical composition containing the nucleic acid e.g, a pharmaceutical composition containing the nucleic acid.
  • Glioblastoma is one of the malignant brain tumors with the poorest prognosis.
  • Glioblastoma has epigenetic abnormalities such as untranslated RNA, histone modification, and DNA methylation in addition to genomic abnormalities such as gene mutations, and these epigenomic abnormalities contribute to carcinogenesis and malignancy of glioblastoma. It has been suggested. Control of gene expression by long noncoding RNA (lncRNA), which is one of non-translated RNAs, is deeply involved in various life phenomena such as cell differentiation and proliferation, and in recent years, involvement in cancer has been reported.
  • lncRNA long noncoding RNA
  • lncRNA is a major untranslated RNA, has a length of more than 200 bases, and is known to have a wide range of functions such as transcriptional repression and protein interaction regulation.
  • LINC00461 is a type of lncRNA that is highly expressed in human glioblastoma cells compared to human neural stem cells. It has been found that LINC00461 (also known as Visc-2, etc.) knockout mice do not show abnormal brain structure or function (Non-patent Document 1), but the function of LINC00461 in the brain is unknown. Furthermore, regarding tissues other than the brain, it is known in Patent Document 1 that LINC00461 can be a diagnostic marker for arthritis.
  • An object of the present invention is to provide a nucleic acid that suppresses the growth of tumors such as glioblastoma targeting a specific lncRNA, that is, the LINC00461 gene, and a pharmaceutical composition containing the nucleic acid.
  • the present inventors have now analyzed that the expression of the C130071C03Rik gene (ortholog of LINC00461) increases from the early stage of carcinogenesis, and further increases during the tumor formation stage, as well as human glioblastoma. It was found that the LINC00461 gene was also highly expressed in tumor samples. The present inventors have now further demonstrated that the use of a nucleic acid that suppresses the expression of the LINC00461 gene significantly suppresses the growth of tumor cells, and thus a nucleic acid that targets the LINC00461 gene is effective in the treatment of tumors such as glioblastoma. I found out.
  • the present invention includes the following features.
  • a pharmaceutical composition for treating or preventing a subject having a tumor that expresses the gene comprising a nucleic acid that suppresses the expression of the LINC00461 gene as an active ingredient.
  • the nucleic acid is siRNA, its precursor RNA, antisense RNA, or modified RNA, or antisense DNA, or DNA encoding the siRNA or its precursor RNA, with respect to the transcript RNA of the LINC00461 gene
  • the pharmaceutical composition according to (1) which is a vector containing the antisense DNA.
  • the nucleic acid is a nucleotide sequence between positions 1 and 150, a nucleotide sequence between positions 700 and 1620, or a nucleotide sequence between positions 3050 and 3560 of the transcript RNA sequence of SEQ ID NO: 37
  • the nucleic acid is the following siRNA or a modified RNA thereof: (A) siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof, (B) siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof, (C) siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof, (D) siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof, (E) siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof, (F) siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense
  • the modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or a combination thereof, at least 2
  • the tumor is selected from the group consisting of brain tumor, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma, (1) to (6) A pharmaceutical composition according to any one of the above.
  • siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof
  • siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof
  • siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof
  • D siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof
  • siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof
  • siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or
  • the modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or a combination thereof, at least 2
  • the antitumor nucleic acid according to (11) comprising two modified nucleotides.
  • the present invention can significantly suppress the growth of tumors such as glioblastoma.
  • This figure shows the relative expression level of C130071C03Rik (or ortholog of LINC00461) over time in a mouse model for glioma formation (20 days old, 60 days old, 90 days old, and 120 days old).
  • the vertical axis shows the expression level of C130071C03Rik when the Gapdh gene is used as an internal standard.
  • the black bar graph indicates the expression level of tumor cells having the gene mutations p53 ⁇ / ⁇ and Nf1 ⁇ / ⁇
  • the gray bar graph indicates the expression level of normal brain cells whose gene mutation is wild type.
  • the horizontal axis shows the number of days since birth. *: P ⁇ 0.05, error bar: standard deviation.
  • This figure shows the result of analyzing the expression level of LINC00461, using the results of TCGA (The Cancer Genome Atlas) exome-sequencing (4 normal cerebral cases, 151 glioblastoma cases).
  • the vertical axis represents the relative expression level (RPKM value). *: P ⁇ 0.05.
  • This figure shows the evaluation of the inhibitory effect of LINC00461 on glioblastoma cell lines (U87 and U251) by siRNAs si-LINC00461 # 1, si-LINC00461 # 2 and si-LINC00461 # 3 (Table 1 described later). (A: U87, B: U251).
  • the expression level of LINC00461 48 hours after introduction of each siRNA is shown as a relative value to the expression level of LINC00461 (referred to as “1”) when control siRNA (si-NC) is introduced. *: P ⁇ 0.05, error bar: standard deviation.
  • This figure shows the evaluation of antiproliferative effect by si-LINC00461 # 1, si-LINC00461 # 2 and si-LINC00461 # 3 (Table 1 described later) against glioblastoma cell lines U87 and U251 (A: U87, B: U251). ).
  • the number of viable tumor cells every 24 hours from the time of introduction of each siRNA is shown as a relative value (relative tumor cell number) to the number of viable tumor cells at the time of siRNA introduction (referred to as “1”).
  • * P ⁇ 0.05
  • error bar standard deviation.
  • mice administered with Alexa-647-labeled LINC00461-LNA oligomer alone are mice administered with Alexa-647-labeled LINC00461-LNA oligomer alone, and the right 3 individuals are the drug delivery formulation containing Alexa-647-labeled LINC00461-LNA oligomer.
  • Results in administered mice. 6A shows a mouse brain tissue after a drug delivery preparation (25 ⁇ g / mouse as a nucleic acid) containing a LINC00461-LNA oligomer is intravenously administered once every three days to a brain tumor orthotopic transplant mouse model. The results of hematoxylin and eosin (HE) staining are shown.
  • HE hematoxylin and eosin
  • the left 3 individuals are mouse brain tissues administered with a drug delivery preparation (control) containing an LNA oligomer for the luciferase gene (firefly GL3 luciferase), and the right 3 individuals are a drug delivery preparation containing this LINC00461-LNA oligomer (this It is a mouse brain tissue administered with the invention.
  • the dotted line indicates the tumor area and the scale bar indicates 1 mm.
  • This figure shows a mouse brain tumor tissue after a drug delivery formulation (25 ⁇ g / mouse as a nucleic acid) containing a LINC00461-LNA oligomer is intravenously administered once every 3 days to a brain tumor orthotopic mouse model.
  • the expression level of LINC00461 is shown. It is shown as a relative value with respect to the expression level (referred to as “1”) of LIN00461 in mouse brain tumor tissue administered with a drug delivery preparation (control) containing a LNA oligomer for the luciferase gene (firefly GL3 luciferase).
  • * Indicates statistical significance (n 3, p ⁇ 0.01).
  • nucleic acid that suppresses the expression of the LINC00461 gene The active ingredient of the present invention is a nucleic acid that suppresses the expression of the LINC00461 gene. As will be described below, the nucleic acid has the effect of suppressing the expression of the LINC00461 gene and thereby suppressing the growth of the tumor.
  • nucleic acids related to the present invention can be prepared using nucleic acid oligomer synthesis techniques (eg, phosphoramidite method, solid phase synthesis method, etc.) known in the literature.
  • LINC00461 gene or “LINC00461” is a kind of untranslated RNA that becomes lncRNA (long noncoding RNA) after transcription, and in humans 1 to 3 variants (variant 1, variant 2).
  • Variant 3 for example, according to NCBI (USA) information, registration number NR — 024384 (variant 1; base sequence of SEQ ID NO: 37 in the case of lncRNA), NR — 024383 (variant 2; sequence number of 38 in the case of ncRNA) Have been reported.
  • the LINC00461 gene includes the above-described base sequence, a base sequence including deletion, substitution, addition or insertion of one or several nucleotides in each of these base sequences, or the above-described base sequences. It is a natural variant consisting of a base sequence having a sequence identity of 70% or more, 80% or more or 90% or more, preferably 95% or more, more preferably 98% or more or 99% or more.
  • LINC00461 is also referred to as EyeLin1, Visc-1a, Visc-1b, Visc-2, etc., and this gene has nucleotide number 88666833 of human chromosome 5. . . 886669939 (NCBI; NC — 000005.10.). As described above, sufficient knowledge about the function of the gene has not been obtained so far.
  • sequence identity means an integer of 2 to 10, preferably an integer of 2 to 5.
  • sequence identity can be determined using a known algorithm such as BLAST for taking a sequence alignment such as a base sequence.
  • the nucleic acid that suppresses the expression of the LINC00461 gene in tumor cells is, for example, siRNA or its precursor RNA having RNA interference (RNAi) action, or a modified RNA thereof, or a transcript RNA of the LINC00461 gene. And a vector containing DNA encoding siRNA or a precursor RNA thereof.
  • RNAi RNA interference
  • Another example of the nucleic acid is antisense RNA or antisense DNA, DNA encoding the antisense RNA, a vector containing the antisense DNA, or a modified nucleic acid thereof.
  • the nucleic acid in the present invention is not limited to a specific type of nucleic acid or nucleic acid sequence as long as it suppresses the expression of the LINC00461 gene in tumor cells and suppresses the growth of the tumor, but the transcription of the LINC00461 gene of the subject is not limited.
  • a region within the base sequence of the body RNA for example, the base sequence of the transcript RNA of the human LINC00461 gene, for example within the region of nucleotide numbers 1-150, 700-1620 or 3200-3560 in the base sequence of SEQ ID NO: 37, or Target a sequence consisting of 18 to 30 nucleotides, preferably 20 to 25 nucleotides, more preferably 21 to 23 nucleotides in the region of nucleotide numbers 500 to 1420 or 3050 to 3360 in the base sequence of SEQ ID NO: 38 Toss It is preferable.
  • More specific target sequences include, for example, SEQ ID NO: 25 (nucleotide numbers 862 to 884 of SEQ ID NO: 37 or nucleotide numbers 664 to 686 of SEQ ID NO: 38), SEQ ID NO: 26 (base numbers 1595 to 1617 of SEQ ID NO: 37, or sequence SEQ ID NO: 27 (nucleotide numbers 706-728 of SEQ ID NO: 37 or nucleotide numbers 504-526 of SEQ ID NO: 38), SEQ ID NO: 28 (nucleotide numbers 46-68 of SEQ ID NO: 37), SEQ ID NO: 29 (nucleotide numbers 114 to 136 of SEQ ID NO: 37), SEQ ID NO: 30 (nucleotide numbers 1426 to 1448 of SEQ ID NO: 37 or nucleotide numbers 1234 to 1256 of SEQ ID NO: 38), SEQ ID NO: 31 (nucleotide numbers of SEQ ID NO: 37) 3269-3 91 or nucleotide numbers
  • siRNA having RNAi (RNA interference) action on LINC00461 or its precursor RNA
  • siRNA is complementary to a part of transcript RNA of LINC00461 gene, 18-25 nucleotides, preferably 20-24 nucleotides, more preferably It is a double-stranded RNA consisting of sense RNA and antisense RNA consisting of 21 to 23 nucleotides and having RNAi action.
  • Each 3 ′ end of the sense RNA and antisense RNA has an overhang of 2-5 nucleotides, preferably 2 nucleotides, eg UU, CU, AC, UC, GC (in the case of DNA, U is T Etc.). It has been pointed out that the protruding end may interact with RISC (WR Strapps et al., Nucleic Acids Res. 2010 Aug; 38 (14): 4788-4797).
  • RNAi action has a meaning commonly used in the art, and a phenomenon in which a short double-stranded RNA (siRNA) degrades a target transcript RNA specifically in its base sequence and suppresses its gene expression. It is.
  • siRNA short double-stranded RNA
  • the precursor RNA is any one of siRNA priRNA, preRNA, and shRNA.
  • the priRNA has a transcript RNA sequence for the LINC00461 gene.
  • preRNA is a preshRNA produced by enzymatic processing of priRNA.
  • shRNA is an abbreviation for short hairpin RNA, and consists of a stem of a sense strand and an antisense strand having the same sequence as siRNA and a hairpin loop, which are enzymatically produced from preshRNA.
  • the shRNA hairpin structure is cleaved into siRNA by cellular machinery and binds to the RNA-induced silencing complex (RISC), which binds to and cleaves transcript RNA having a sequence complementary to the siRNA. .
  • RISC RNA-induced silencing complex
  • the nucleic acid of the present invention comprises, for example, an siRNA comprising an antisense strand sequence of SEQ ID NO: 5 and a sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof, an antisense strand sequence of SEQ ID NO: 7 and a sense strand sequence of SEQ ID NO: 8.
  • siRNA or a modified RNA thereof siRNA comprising an antisense strand sequence of SEQ ID NO: 9 and a sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof, siRNA comprising an antisense strand sequence of SEQ ID NO: 11 and a sense strand sequence of SEQ ID NO: 12 or The modified RNA, the siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or its modified RNA, the siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modification thereof RNA, the antisense strand sequence of SEQ ID NO: 17 and the sequence of SEQ ID NO: 18 SiRNA comprising a strand sequence or a modified RNA thereof, siRNA comprising an antisense strand sequence of SEQ ID NO: 19 and a sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof, an antisense strand sequence of
  • the nucleic acid of the present invention is a vector comprising the siRNA, a DNA encoding the precursor RNA or the antisense RNA, or an antisense DNA with respect to the transcript RNA of the LINC00461 gene.
  • a preferred precursor RNA is shRNA.
  • the vector contains a regulatory sequence that enables expression of the DNA when introduced into a cell, for example, a viral vector such as adeno-associated virus, retrovirus, lentivirus, Sendai virus, or a plasmid, artificial chromosome (for example, , Bacterial artificial chromosome (BAC), yeast artificial chromosome (YAC), human artificial chromosome (HAC), or mouse artificial chromosome (MAC)).
  • BAC Bacterial artificial chromosome
  • YAC yeast artificial chromosome
  • HAC human artificial chromosome
  • MAC mouse artificial chromosome
  • Preferred vectors are plasmids, Sendai virus vectors, adeno-associated virus vectors and the like from the viewpoint of safety.
  • the plasmid is preferably a plasmid that can be used in mammalian cells, preferably human cells, and has been proven to be safe.
  • plasmid vectors include, for example, vectors as described in JP-T-2014-508515, such as pSilencer 4.1-CMV (Ambion), pcDNA3, pcDNA3.1 / hyg, pHCMV / Zeo, pCR3. 1, pEF1 / His, pIND / GS, pRc / HCMV2, pSV40 / Zeo2, pTRACER-HCMV, pUB6 / V5-His, pVAX1, pZeoSV2, pCI, pSVL, pKSV-10, pBPV-1, pML2d, pML2d, etc. Examples include, but are not limited to, viral vectors.
  • the regulatory sequence includes a promoter, a transcription initiation point, a terminator, and the like, and can include an enhancer, a selectable marker sequence, and the like as necessary.
  • the promoter any endogenous or exogenous promoter can be used as long as it promotes transcription initiation of the DNA in a specific host cell.
  • the promoter is a U6 or H1 promoter. It is also expressed by the daughter cell and inherited by the gene silencing effect.
  • RNA is quite unstable because it is easily degraded by ribonuclease in vivo, for example, in blood.
  • nucleotide modification of the sense strand and the antisense strand is preferably performed.
  • the modification may be at least one, preferably multiple nucleotide modifications, such as base modifications, sugar modifications, phosphodiester moiety modifications, or combinations thereof, and / or cyclic structures (double stranded stems and A structure composed of two loops), a chimeric structure containing DNA, and the like. Modifications include, but are not limited to:
  • RNA and DNA are nucleic acids composed of a chain of nucleotides consisting of sugar, base and phosphodiester bonds, and the structural differences between these nucleic acids are in the sugars in the nucleotides, that is, the sugar in RNA is ribose.
  • the sugar of DNA is 2′-deoxyribose in which the hydroxyl group at the 2 ′ position is replaced with hydrogen, and a further difference is that the bases of RNA are adenine (A), uracil (U), guanine ( G) and cytosine (C), while the base of DNA consists of adenine (A), thymine (T), guanine (G) and cytosine (C).
  • the modification of the phosphodiester moiety as the backbone includes substitution by modification with, for example, a phosphorothioate, phosphorodithioate, alkylphosphonate, or phosphoramidate bond instead of the phosphodiester bond.
  • RNA and DNA include 2′-deoxy-2′-halo (eg, fluoro, chloro or bromo) nucleotides, 2′-deoxy as exemplified in JP-T-2007-525192.
  • 2′-deoxy-2′-halo eg, fluoro, chloro or bromo
  • the 2′-O— group may be substituted with a 2′-S— group.
  • the 2′ position of the sugar as described in, for example, JP-T-2010-507579 is substituted with, for example, halogen, allyl, amino, azide, acetoxy, alkyl.
  • LNA-modified nucleotides are artificial nucleic acids developed by Takeshi Imanishi et al. (M. Abdur Rahman, Sayori Seki, Satoshi Obika, HaruhisashiYoshikawa, Kazuyuki Miki).
  • '-BNA A bridged nucleic acid analog "J. Am. Chem. Soc. 130.4886-4896 (2008)), and LNA (“ BNA (Bridged Nucleic Acid) in the nucleotide sequence of the siRNA of the present invention ". ) ").
  • the nucleotide introduced with) Comes to have a nuclease-resistant.
  • the nucleic acid of the present invention can also have an RNA / DNA chimera structure containing a deoxyribonucleotide sequence in a part of the base sequence of siRNA.
  • a deoxyribonucleotide sequence By including the deoxyribonucleotide sequence, it becomes possible to make it more nuclease resistant than the ribonucleotide sequence alone (for example, Japanese Patent No. 3803318).
  • Deoxyribonucleotides can be included at a ratio of 30% or less, preferably 20% or less, based on the total number of nucleotides in the antisense strand or sense strand of the siRNA base sequence.
  • deoxyribonucleotide may be contained in both the antisense strand and the sense strand of siRNA, or may be contained only in the sense strand. Further, deoxyribonucleotides in the base sequence of siRNA are preferably present on the 3 ′ side. For example, they may be present in a sequence in which 2 to 4 deoxyribonucleotides are continuous as protruding ends at the 3 ′ end.
  • the nucleic acid having the above circular structure is a so-called dumbbell-type single-stranded RNA.
  • the stem is composed of complementary sequences of the sense strand sequence and the antisense strand sequence of siRNA.
  • the loop is composed of, for example, about 2 to about 15 nucleotides that are non-complementary per loop linked to each end of the stem (see, eg, US Pat. No. 5,168,053, US Pat. No. 5,190). 931, U.S. Pat. No. 5,135,917, Smith and Clausel et al. (1993) Nucl. Acids Res. 21: 3405-3411, and U.S. Pat. No. 5,087,617. ).
  • nucleic acid examples include the antisense RNA (or antisense DNA) described above or a modified nucleic acid thereof.
  • Antisense RNA is a single-stranded nucleic acid that targets lncRNA, which is a transcription product of the LINC00461 gene.
  • the siRNA targeting the lncRNA degrades the lncRNA, whereas the antisense RNA (or antisense DNA) suppresses or inhibits the lncRNA function.
  • the antisense RNA or antisense DNA is preferably an RNA / DNA chimeric structure and / or a modified derivative containing one or more of the above-mentioned modified nucleotides.
  • modified nucleotides are those described above, and a more preferred example is a combination of phosphorothioate modifications and 2'-MOE nucleotides, 2'-OMe nucleotides or LNA modified nucleotides.
  • the base length of antisense RNA (or antisense DNA) or a modified derivative thereof is usually 12 to 100 nucleotides, preferably 15 to 50 nucleotides, more preferably 20 to 30 nucleotides. Although the base length can be longer than 100 nucleotides, the above range is suitable because it is disadvantageous particularly in terms of production cost.
  • the sequence of the antisense RNA or the antisense DNA is the nucleotide sequence of the LINC00461 gene transcript lncRNA or the DNA encoding it, for example, the sequence derived from human LINC00461 of SEQ ID NO: 37 or 38, or each of these nucleotide sequences and 70% 80% or more or 90% or more, preferably 95% or more, more preferably 98% or more or 99% or more, from the base sequence of LINC00461, which is a natural variant consisting of a base sequence having sequence identity,
  • the base sequence to be selected can be selected to be a base sequence complementary to this sequence or a modified base sequence thereof.
  • the nucleotide sequence of the transcript RNA of the human LINC00461 gene for example, in the nucleotide sequence of SEQ ID NO: 37, in the region of nucleotide numbers 1-150, 700-1620, 3200-3560, or of SEQ ID NO: 38 It is preferable to target a sequence consisting of 19 to 30 nucleotides, preferably 20 to 25 nucleotides, more preferably 21 to 23 nucleotides in the region of nucleotide numbers 500 to 1420 or 3050 to 3360 in the base sequence.
  • a specific target sequence is a sequence including any one of the nucleotide sequences of SEQ ID NOs: 25 to 34 as described above.
  • composition for treating or preventing tumors comprises a nucleic acid that suppresses the expression of the LINC00461 gene in tumor cells and thereby suppresses tumor growth as an active ingredient. . Since the composition of the present invention targets tumor cells, tumor growth can be suppressed, tumors can be regressed, and tumor metastasis can also be suppressed in some cases. In the present invention, since the expression of the LINC00461 gene is observed in early stage cancers of stages 1 and 2 (FIG. 1), it is also effective for early stage cancers.
  • the tumor comprising the administration of the pharmaceutical composition of the present invention or the nucleic acid that is an active ingredient thereof to a subject (eg, human) having or suspected of having a tumor or cancer expressing the LINC00461 gene
  • a method for the treatment or prevention of cancer is also provided.
  • the nucleic acid which is the active ingredient of the present invention can be used for the production of the pharmaceutical composition of the present invention.
  • the nucleic acid may be formulated in the form of a composition containing itself mixed with a carrier or the like, or may be formulated so as to be incorporated into a delivery system.
  • the dose of the nucleic acid is, but is not limited to, in humans, for example, about 0.01 mg to about 1,000 mg per dose and per kg body weight for an adult, but generally the dose or dose is determined by the subject's gender, It should be selected in consideration of age, weight, symptoms, severity, side effects, etc.
  • administration can be performed, for example, at intervals of 1 week, 2 weeks, 3 weeks, or 4 weeks, or at intervals exceeding 1 month if necessary.
  • a carrier or diluent and an additive can be mixed to form a pharmaceutical composition.
  • a so-called pharmaceutical kit can be prepared by combining the pharmaceutical composition with other anticancer agents (for example, chemotherapeutic agents, antibody drugs, etc.) and / or other treatment-related drugs.
  • the carrier or diluent can vary depending on the form of the formulation, ie, usually a solid formulation, a semi-solid formulation or a liquid (or solution) formulation, or a dosage form (or dosage form).
  • oral preparations such as tablets, capsules, granules, powders, syrups and gels, or injections, drops, transmucosal agents (eg, nasal agents), transdermal administration And parenteral administration agents such as pills, liposomes, rectal administration (or suppositories), inhalants, ointments, lotions and the like.
  • the diluent for liquid preparation includes, for example, distilled water, sterilized water, Ringer's solution, physiological saline and the like. If necessary, an appropriate amount of ethanol can be mixed.
  • an organic solvent alone or an organic solvent / water mixture can be used as a carrier or an excipient.
  • organic solvents examples include ethanol, isopropanol, isobutanol, sec-butanol, tert-butanol, acetonitrile, acetone, ketone, dimethyl sulfoxide, dimethylformamide, glycerol, polyethylene glycol, fats and oils such as cocoa butter and soybean oil, and these Is included.
  • carriers or excipients for solid formulations include maltose, lactose, sucrose, starch, gelatin, tragacanth gum, methylcellulose, hydroxypropylmethylcellulose, sodium carboxymethylcellulose, and the like.
  • Additives are pharmaceutically acceptable, for example, excipients, extenders, fillers, binders, wetting agents, disintegrants, lubricants, emulsifiers, dispersants, buffers, preservatives, solubilizers, Examples include antiseptics, flavoring agents, soothing agents, stabilizers, tonicity agents, pH adjusters, and the like.
  • Examples of the administration route include intravenous administration, intraarterial administration, oral administration, transpulmonary administration, tissue administration, transdermal administration, transmucosal administration, rectal administration, intraperitoneal administration, intracerebral administration, and the like. .
  • intravenous administration, transdermal administration, and transmucosal administration are particularly preferable.
  • the nucleic acid can be encapsulated in, for example, liposomes.
  • a cationic liposome is usually used (Y. TAKAHASHI et al., YAKUGAKU ZASSHI 127 (10) 1525-1531 (2007)).
  • Cationic liposomes are positively charged and easily bind electrostatically to negatively charged cell membranes, and passively bound liposome membranes are taken up into the cytoplasm via endocytosis and are transferred from the endosomes. It is thought that it escapes and is released into the cytoplasm.
  • nucleic acid of the present invention may be contained or encapsulated in a non-liposomal drug delivery material such as a nano-sized polymer micelle type drug delivery material (see Table 2007/099660, Table 2007/999661, Table 2009/113645, WO2013 / 162041, Table 2010/093036, Table 2012/005376).
  • a non-liposomal drug delivery material such as a nano-sized polymer micelle type drug delivery material (see Table 2007/099660, Table 2007/999661, Table 2009/113645, WO2013 / 162041, Table 2010/093036, Table 2012/005376).
  • the present invention further provides a method for treating a subject having a tumor that highly expresses the LINC00461 gene as compared with a normal tissue, comprising administering the above composition as an anticancer agent to the subject.
  • a “subject” is a mammal, including humans, pet animals (dogs, cats, etc.), animals kept in zoos, and preferably humans.
  • the tumors that can be treated according to the present invention are preferably malignant tumors expressing the LINC00461 gene, such as brain tumors, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma, preferably brain tumors (eg Blastoma), but is not limited to these tumors.
  • malignant tumors expressing the LINC00461 gene such as brain tumors, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma, preferably brain tumors (eg Blastoma), but is not limited to these tumors.
  • the use of the above-described nucleic acid in cells of brain tumors such as glioblastoma has confirmed an excellent cell growth-suppressing effect. Therefore, the composition containing the nucleic acid of the present invention as an active ingredient is used as an anticancer agent targeting tumor cells. Was also found to be excellent.
  • compositions subject, dose, route of administration, number of doses, etc. are as described above.
  • composition of the present invention can be administered to a subject in combination with administration of other cancer therapeutic agents such as chemotherapeutic agents, pharmaceutical antibodies, immune checkpoint inhibitors.
  • Administration of the composition can occur before, simultaneously with, or after administration of other cancer therapeutic agents such as chemotherapeutic agents, pharmaceutical antibodies, immune checkpoint inhibitors.
  • chemotherapeutic agents include, but are not limited to, anticancer agents as described in JP-T-2014-508515, for example, topoisomerase inhibitors (for example, etoposide, lamptothecin, topotecan, teniposide, mitoxantrone, etc.), DNA alkylating agents (eg, cisplatin, mechloretamine, cyclophosphamide, ifosfamide, melphalan, columbucil, busulfan, thiotepa, carmustine, lomustine, carboplatin, dacarbazine, procarbazine, etc.), DNA strand breakage inducers (eg, bleomycin, Doxorubicin, daunorubicin, idarubicin, mitomycin C, etc.), microtubule inhibitors (eg, vincristine, vinblastine, etc.), antimetabolites (eg, cytarabine, methotre
  • Examples of pharmaceutical antibodies include, but are not limited to, various commercially available antibodies including trastuzumab, bevacizuzumab, panitumumab, cetuximab, rituximab, and mogamulizumab, as well as developed and marketed antibodies.
  • An immune checkpoint inhibitor is a drug for restoring the original attack power of immune cells against cancer cells by suppressing the cancer cells from avoiding attacks from immune cells.
  • PD-1 programmed cell
  • PD-L1 programmed death-ligand 1
  • the dosage of the above drug is selected in consideration of the sex, age, weight, symptom, severity, side effects, etc. of the subject, or is in a range actually used in clinical practice.
  • Example 1 ⁇ Changes in C130071C03Rik expression over time in a mouse model of glioma formation> From 15876 lncRNAs registered in a public database (GENCODE), 134 lncRNAs having base sequences conserved in humans and mice (homology,> 80%, base length,> 200 bp) were identified. Furthermore, LINC00461 highly expressed in glioblastoma cells was identified by comparing the results of RNA sequencing of human glioblastoma cells and human neural stem cells. C130071C03Rik is an orthologue of LINC00461 (human) derived from a mouse.
  • the present inventors conducted the following experiment using a genetically modified mouse model (p53 ⁇ / ⁇ , Nf1 ⁇ / ⁇ ) that naturally causes glioma (Zong H et al. Cell, 2011, 146: 209-221).
  • the glioma mouse model includes three strains of genetically-mutated mice purchased from The Jackson Laboratory (# 17530, (STOCK Iis2tm1 (ACTB-tdTomato, -EGFP) LuoTrp53tm1TyjNf1tm1Par / J), # 4600T (F-Bcg), # 4600T ) 25 MesJ), # 13749, (STOCK Iis2tm1 (ACTB-EGFP, -tdTomato) Luo / J).
  • the cerebrum of the glioma-forming mouse model was removed.
  • BD FACSAria TM II cell sorter
  • Gapdh primer sequence Gapdh-Forward CGTCCCGTAGACAAAATGGT (SEQ ID NO: 1) Gapdh-Reverse GAATTTGCCGTGAGTGGAGT (SEQ ID NO: 2)
  • C130071C03Rik primer sequence C130071C03Rik-Forward TGACACTTCAAAGAAGCATAAAATG (SEQ ID NO: 3)
  • C130071C03Rik-Reverse TGTGAATGTTTTAAGGGAGATCCT SEQ ID NO: 4
  • Example 2 ⁇ Analysis of LINC00461 expression level in human glioblastoma patient cerebrum> The data of LINC00461 in 151 cases of glioblastoma and 4 cases of normal cerebrum were obtained from the TCGA (The Cancer Genome Atlas) database, and the expression of LINC00461 was analyzed.
  • TCGA The Cancer Genome Atlas
  • LINC00461 was also highly expressed in human glioblastoma samples (FIG. 2). In addition, it was estimated that LINC00461 may be involved in glioblastoma formation.
  • siRNA that suppresses the expression of LINC00461 The present inventors produced three types of siRNA that suppress the expression of LINC00461.
  • siDirect version 2.0 http://sidirect2.rnai.jp/
  • a target sequence was searched for the LINC00461 RNA sequence (RefSeq NR — 024384) to prepare three types of siRNA (si-LINC00461 # 1 to # 10; consigned to Hokkaido System Science Co., Ltd. (Sapporo, Japan)).
  • the sequence of siRNA is shown in Table 1. For all siRNAs, 2 bases at the 3 ′ end were synthesized as DNA.
  • siRNA final concentration 50 nM was introduced into a glioblastoma cell line (U87, U251, each initial cell number 5 ⁇ 10 4 ) using Lipofectamine 3000 (Life Technologies) according to the attached protocol.
  • Silencer Select Negative Control # 1 siRNA (Life Technologies; catalog number 4390843) was used as the control siRNA. 48 hours after siRNA introduction, the expression level of LINC00461 relative to control siRNA was quantified by qRT-PCR using the GAPDH gene as an internal standard, and the effect of suppressing the expression of three types of siRNA against LINC00461 was confirmed (FIG. 3).
  • SiRNA final concentration 50 nM was introduced into a glioblastoma cell line (U87, U251; initial cell number 5 ⁇ 10 3 ) on a 96-well plate. 24, 48, and 72 hours after introduction, 10 ⁇ l of cell counting kit-8 (Dojindo Laboratories (Kumamoto, Japan); product code CK04) was added to each well, and 2 hours later, a microplate reader (versaMAX) The absorbance at 450 nm was measured.
  • cell counting kit-8 Dojindo Laboratories (Kumamoto, Japan); product code CK04
  • Example 5 ⁇ Anti-tumor effect of drug delivery formulation containing LINC00461-LNA oligomer for brain tumor orthotopic transplantation mouse model>
  • the glioblastoma cell line U87 was orthotopically transplanted into the brain of an immunodeficient mouse (BLAB / c slc-nu / nu; Nippon SLC Co., Ltd. (Shizuoka, Japan)) as a brain tumor orthotopic mouse model, and 14 days after transplantation Mice with engrafted brain tumors were prepared.
  • drug delivery materials nano-sized polymer micelle type (polyethylene glycol-polyamino acid block copolymer); K. Osada et al., J.R. Soc. . Interface (2009) 6, S325-S339;.. Miura, Y.
  • a LINC00461-LNA oligomer (antisense DNA in which 5'-side AGT and 3'-side CTT are locked nucleic acids; 5'-AGTTTATTCCGAACTTTTCTT-3 '(SEQ ID NO: 39)) is a fluorescent substance ( Labeled with Alexa-647).
  • a single LINC00461-LNA oligomer labeled with Alexa-647 was used.
  • LINC00461-LNA oligomer-encapsulated drug delivery formulation and LINC00461-LNA oligomer alone were intravenously administered to brain tumor orthotopic transplanted mice (25 ⁇ g / mouse), and the fluorescence intensity was measured by IVIS Imaging System (Caliper LifeSciences). It was confirmed that the drug delivery preparation encapsulating the LNA oligomer was specifically accumulated in the brain tumor site (FIG. 5).
  • a drug delivery formulation containing a LINC00461-LNA oligomer is continuously administered intravenously (every 3 days) to the above brain tumor orthotopic transplanted mice (mice 14 days after transplantation of glioblastoma cell line U87). Once administered (25 ⁇ g / mouse)), antitumor effects were evaluated.
  • drug delivery containing LNA oligomers for Firefly GL3 Luciferase gene (5′-TCGAAGTACTCAGCGTAAGTT-3 ′ (SEQ ID NO: 40)), which is an antisense DNA in which 5 ′ TCG and 3 ′ GTT are locked nucleic acids. Mice to which the formulation was administered were used.
  • a drug delivery formulation containing LINC00461-LNA oligomer The tumor was markedly reduced by administration of (Fig. 6).
  • RNA was extracted from mouse brain tumor tissue, and the expression level of LINC00461 was quantified by qRT-PCR, confirming the expression-suppressing effect on the drug delivery formulation containing the LINC00461-LNA oligomer (FIG. 7).
  • the drug delivery preparation encapsulating the LINC00461-LNA oligomer specifically accumulates in the brain tumor in vivo and exhibits a strong antitumor action.
  • an inhibitory effect on the growth of tumors such as glioblastoma was observed by suppressing the expression of LINC00461 in tumor cells using siRNA.
  • Useful for the treatment or prevention of tumors Useful for the treatment or prevention of tumors.
  • SEQ ID NOs: 1-4 primer SEQ ID NOs: 5-24: siRNA of human LINC00461 SEQ ID NO: 35-36: Primer SEQ ID NO: 39: LINC00461-LNA oligomer SEQ ID NO: 40: LNA oligomer for Firefly GL3 Luciferase gene

Abstract

This application provides a pharmaceutical composition for treatment or prevention in a subject having a tumor that expresses the LINC00461 gene characterized by including as an active ingredient a nucleic acid that suppresses the expression of the LINC00461 gene, and an antitumor nucleic acid that suppresses the expression of the LINC00461 gene.

Description

脳腫瘍を含む腫瘍の治療用核酸および組成物Nucleic acids and compositions for the treatment of tumors including brain tumors
 本発明は、脳腫瘍(例、膠芽腫)を含む腫瘍の治療用核酸、ならびに該核酸を含む医薬組成物に関する。 The present invention relates to a nucleic acid for treating a tumor including a brain tumor (eg, glioblastoma) and a pharmaceutical composition containing the nucleic acid.
 膠芽腫は最も予後不良な悪性脳腫瘍のひとつである。膠芽腫は遺伝子変異などのゲノム異常に加えて非翻訳RNA、ヒストン修飾、DNAメチル化などのエピゲノム異常を有しており、これらエピゲノム異常が膠芽腫の発がんや悪性化に寄与していることが示唆されている。非翻訳RNAのひとつであるlong noncoding RNA (lncRNA)による遺伝子発現の制御は細胞の分化や増殖などの様々な生命現象に深く関わっており、近年ではがんへの関与も報告されている。 Glioblastoma is one of the malignant brain tumors with the poorest prognosis. Glioblastoma has epigenetic abnormalities such as untranslated RNA, histone modification, and DNA methylation in addition to genomic abnormalities such as gene mutations, and these epigenomic abnormalities contribute to carcinogenesis and malignancy of glioblastoma. It has been suggested. Control of gene expression by long noncoding RNA (lncRNA), which is one of non-translated RNAs, is deeply involved in various life phenomena such as cell differentiation and proliferation, and in recent years, involvement in cancer has been reported.
 本発明者らは、生物種を越えて進化学的に遺伝子配列が保存されたlncRNAは少ないが、それらのなかには重要な機能をもつ可能性が高いものが存在することに着目してきた。lncRNAは、非翻訳RNAのなかで主要なものであり200塩基を超える長さを有しており、広範な機能、例えば転写抑制、タンパク相互作用調節などの機能を有することが知られている。 The present inventors have focused on the fact that there are few lncRNAs that have evolutionarily preserved gene sequences across species, but some of them are likely to have important functions. lncRNA is a major untranslated RNA, has a length of more than 200 bases, and is known to have a wide range of functions such as transcriptional repression and protein interaction regulation.
 後述するように、本発明者らは今回、ヒト神経幹細胞に比べてヒト膠芽腫細胞で高発現する、lncRNAの1種であるLINC00461を同定した。LINC00461(別称:Visc-2、等)のノックアウトマウスでは脳の構造や機能異常を認めないことが判明しているが(非特許文献1)、脳内におけるLINC00461の機能は不明である。さらにまた、脳以外の組織については、特許文献1において、LINC00461は関節炎の診断マーカーになりうることが知られている。 As described later, the present inventors have now identified LINC00461, which is a type of lncRNA that is highly expressed in human glioblastoma cells compared to human neural stem cells. It has been found that LINC00461 (also known as Visc-2, etc.) knockout mice do not show abnormal brain structure or function (Non-patent Document 1), but the function of LINC00461 in the brain is unknown. Furthermore, regarding tissues other than the brain, it is known in Patent Document 1 that LINC00461 can be a diagnostic marker for arthritis.
US 2013/0129668 A1US 2013/0129668 A1
 本発明は、ある特定のlncRNA、すなわちLINC00461遺伝子、を標的として膠芽腫等の腫瘍の増殖を抑制する核酸、ならびに該核酸を含む医薬組成物を提供することを目的とする。 An object of the present invention is to provide a nucleic acid that suppresses the growth of tumors such as glioblastoma targeting a specific lncRNA, that is, the LINC00461 gene, and a pharmaceutical composition containing the nucleic acid.
 本発明者らは今回、神経膠腫形成マウスモデルを用いた解析によってC130071C03Rik遺伝子(LINC00461のオルソログ)は発癌早期より発現が上昇し、腫瘍形成期にさらに発現が上昇すること、ならびに、ヒト膠芽腫検体においてもLINC00461遺伝子は高発現していることを見出した。本発明者らは今回さらに、LINC00461遺伝子の発現を抑制する核酸の使用により腫瘍細胞の増殖が有意に抑制されること、したがってLINC00461遺伝子を標的とした核酸が膠芽腫等の腫瘍の治療に有効であることを見出した。 The present inventors have now analyzed that the expression of the C130071C03Rik gene (ortholog of LINC00461) increases from the early stage of carcinogenesis, and further increases during the tumor formation stage, as well as human glioblastoma. It was found that the LINC00461 gene was also highly expressed in tumor samples. The present inventors have now further demonstrated that the use of a nucleic acid that suppresses the expression of the LINC00461 gene significantly suppresses the growth of tumor cells, and thus a nucleic acid that targets the LINC00461 gene is effective in the treatment of tumors such as glioblastoma. I found out.
 本発明は、以下の特徴を包含する。 The present invention includes the following features.
 (1)LINC00461遺伝子の発現を抑制する核酸を有効性成分として含むことを特徴とする、該遺伝子を発現する腫瘍を有する被験体を治療または予防するための医薬組成物。 (1) A pharmaceutical composition for treating or preventing a subject having a tumor that expresses the gene, comprising a nucleic acid that suppresses the expression of the LINC00461 gene as an active ingredient.
 (2)前記核酸が、LINC00461遺伝子の転写体RNAに対する、siRNA、その前駆体RNA、アンチセンスRNA、もしくはその修飾RNA、またはアンチセンスDNA、あるいは、該siRNAもしくはその前駆体RNAをコードするDNAまたは該アンチセンスDNAを含むベクターであることを特徴とする、(1)に記載の医薬組成物。 (2) The nucleic acid is siRNA, its precursor RNA, antisense RNA, or modified RNA, or antisense DNA, or DNA encoding the siRNA or its precursor RNA, with respect to the transcript RNA of the LINC00461 gene The pharmaceutical composition according to (1), which is a vector containing the antisense DNA.
 (3)前記核酸が、配列番号37の前記転写体RNA配列の1位と150位の間の塩基配列、700位と1620位の間の塩基配列、または3050位と3560位の間の塩基配列を標的とすることを特徴とする、(1)または(2)に記載の医薬組成物。 (3) The nucleic acid is a nucleotide sequence between positions 1 and 150, a nucleotide sequence between positions 700 and 1620, or a nucleotide sequence between positions 3050 and 3560 of the transcript RNA sequence of SEQ ID NO: 37 The pharmaceutical composition according to (1) or (2), wherein
 (4)前記核酸が標的とする塩基配列が、配列番号25~34からなる群から選択されることを特徴とする、(3)に記載の医薬組成物。 (4) The pharmaceutical composition according to (3), wherein the base sequence targeted by the nucleic acid is selected from the group consisting of SEQ ID NOs: 25 to 34.
 (5)前記核酸が、下記のsiRNAまたはその修飾RNA:
 (a)配列番号5のアンチセンス鎖配列と配列番号6のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (b)配列番号7のアンチセンス鎖配列と配列番号8のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (c)配列番号9のアンチセンス鎖配列と配列番号10のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (d)配列番号11のアンチセンス鎖配列と配列番号12のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (e)配列番号13のアンチセンス鎖配列と配列番号14のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (f)配列番号15のアンチセンス鎖配列と配列番号16のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (g)配列番号17のアンチセンス鎖配列と配列番号18のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (h)配列番号19のアンチセンス鎖配列と配列番号20のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (i)配列番号21のアンチセンス鎖配列と配列番号22のセンス鎖配列からなるsiRNAまたはその修飾RNA、ならびに、
 (j)配列番号23のアンチセンス鎖配列と配列番号24のセンス鎖配列からなるsiRNAまたはその修飾RNA、
からなる群から選択される1つのsiRNAまたはその修飾RNAあるいは2つ以上のsiRNAおよび/またはその修飾RNAの組み合わせであることを特徴とする、(1)~(4)のいずれかに記載の医薬組成物。
(5) The nucleic acid is the following siRNA or a modified RNA thereof:
(A) siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof,
(B) siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof,
(C) siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof,
(D) siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof,
(E) siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof,
(F) siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modified RNA thereof,
(G) siRNA comprising the antisense strand sequence of SEQ ID NO: 17 and the sense strand sequence of SEQ ID NO: 18 or a modified RNA thereof,
(H) siRNA comprising the antisense strand sequence of SEQ ID NO: 19 and the sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof,
(I) siRNA comprising the antisense strand sequence of SEQ ID NO: 21 and the sense strand sequence of SEQ ID NO: 22 or a modified RNA thereof, and
(J) siRNA comprising the antisense strand sequence of SEQ ID NO: 23 and the sense strand sequence of SEQ ID NO: 24 or a modified RNA thereof,
The pharmaceutical according to any one of (1) to (4), characterized in that it is one siRNA selected from the group consisting of: a modified RNA thereof, or a combination of two or more siRNAs and / or modified RNA thereof. Composition.
 (6)前記修飾RNAが、2'-O、4'-Cメチレンブリッジを有するロックされたLNA修飾ヌクレオチド、2'-メトキシヌクレオチド、2'-メトキシエトキシヌクレオチド、あるいはそれらの組み合わせからなる、少なくとも2つの修飾ヌクレオチドを含むことを特徴とする、(2)~(5)のいずれかに記載の医薬組成物。 (6) The modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or a combination thereof, at least 2 The pharmaceutical composition according to any one of (2) to (5), which comprises two modified nucleotides.
 (7)前記腫瘍が、脳腫瘍、乳癌、大腸癌、前立腺癌、肝臓癌、肺癌、白血病、子宮頸癌およびリンパ腫からなる群から選択されることを特徴とする、(1)~(6)のいずれかに記載の医薬組成物。 (7) The tumor is selected from the group consisting of brain tumor, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma, (1) to (6) A pharmaceutical composition according to any one of the above.
 (8)前記脳腫瘍が、膠芽腫であることを特徴とする、(7)に記載の医薬組成物。 (8) The pharmaceutical composition according to (7), wherein the brain tumor is glioblastoma.
 (9)前記腫瘍が早期癌であることを特徴とする、(1)~(8)のいずれかに記載の医薬組成物。 (9) The pharmaceutical composition according to any one of (1) to (8), wherein the tumor is early cancer.
 (10)前記核酸が、ドラッグデリバリー材料に含まれることを特徴とする、(1)~(9)のいずれかに記載の医薬組成物。 (10) The pharmaceutical composition according to any one of (1) to (9), wherein the nucleic acid is contained in a drug delivery material.
 (11)下記の核酸:
 (a)配列番号5のアンチセンス鎖配列と配列番号6のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (b)配列番号7のアンチセンス鎖配列と配列番号8のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (c)配列番号9のアンチセンス鎖配列と配列番号10のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (d)配列番号11のアンチセンス鎖配列と配列番号12のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (e)配列番号13のアンチセンス鎖配列と配列番号14のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (f)配列番号15のアンチセンス鎖配列と配列番号16のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (g)配列番号17のアンチセンス鎖配列と配列番号18のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (h)配列番号19のアンチセンス鎖配列と配列番号20のセンス鎖配列からなるsiRNAまたはその修飾RNA、
 (i)配列番号21のアンチセンス鎖配列と配列番号22のセンス鎖配列からなるsiRNAまたはその修飾RNA、ならびに、
 (j)配列番号23のアンチセンス鎖配列と配列番号24のセンス鎖配列からなるsiRNAまたはその修飾RNA、
からなる群から選択される抗腫瘍性核酸。
(11) The following nucleic acids:
(A) siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof,
(B) siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof,
(C) siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof,
(D) siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof,
(E) siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof,
(F) siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modified RNA thereof,
(G) siRNA comprising the antisense strand sequence of SEQ ID NO: 17 and the sense strand sequence of SEQ ID NO: 18 or a modified RNA thereof,
(H) siRNA comprising the antisense strand sequence of SEQ ID NO: 19 and the sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof,
(I) siRNA comprising the antisense strand sequence of SEQ ID NO: 21 and the sense strand sequence of SEQ ID NO: 22 or a modified RNA thereof, and
(J) siRNA comprising the antisense strand sequence of SEQ ID NO: 23 and the sense strand sequence of SEQ ID NO: 24 or a modified RNA thereof,
An antitumor nucleic acid selected from the group consisting of:
 (12)前記修飾RNAが、2'-O、4'-Cメチレンブリッジを有するロックされたLNA修飾ヌクレオチド、2'-メトキシヌクレオチド、2'-メトキシエトキシヌクレオチド、あるいはそれらの組み合わせからなる、少なくとも2つの修飾ヌクレオチドを含むことを特徴とする、(11)に記載の抗腫瘍性核酸。 (12) The modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or a combination thereof, at least 2 The antitumor nucleic acid according to (11), comprising two modified nucleotides.
 本発明により、膠芽腫等の腫瘍の増殖を有意に抑制することができる。 The present invention can significantly suppress the growth of tumors such as glioblastoma.
この図は、神経膠腫形成マウスモデル(生後20日齢、60日齢、90日齢、および120日齢)における経時的なC130071C03Rik(LINC00461のオルソログ)の相対発現量を示す。縦軸は、Gapdh遺伝子を内部標準としたときのC130071C03Rikの発現量を示す。黒色の棒グラフは、p53-/-,Nf1-/-の遺伝子変異をもつ腫瘍細胞の発現量を、灰色の棒グラフは、遺伝子変異が野生型の正常脳細胞の発現量をそれぞれ示す。横軸は生後からの日数を示す。*:p<0.05、エラーバー:標準偏差。This figure shows the relative expression level of C130071C03Rik (or ortholog of LINC00461) over time in a mouse model for glioma formation (20 days old, 60 days old, 90 days old, and 120 days old). The vertical axis shows the expression level of C130071C03Rik when the Gapdh gene is used as an internal standard. The black bar graph indicates the expression level of tumor cells having the gene mutations p53 − / − and Nf1 − / −, and the gray bar graph indicates the expression level of normal brain cells whose gene mutation is wild type. The horizontal axis shows the number of days since birth. *: P <0.05, error bar: standard deviation. この図は、公表されたTCGA(The Cancer Genome Atlas)のexome-sequencing(正常大脳4症例、膠芽腫151症例)の結果を用いて、LINC00461の発現量を解析した結果を示す。縦軸は相対発現量(RPKM値)を示す。*:p<0.05。This figure shows the result of analyzing the expression level of LINC00461, using the results of TCGA (The Cancer Genome Atlas) exome-sequencing (4 normal cerebral cases, 151 glioblastoma cases). The vertical axis represents the relative expression level (RPKM value). *: P <0.05. この図は、siRNAであるsi-LINC00461#1、si-LINC00461#2およびsi-LINC00461#3(後述の表1)による膠芽腫細胞株(U87およびU251)でのLINC00461の発現抑制効果の評価(A:U87、B:U251)を示す。各siRNA導入48時間後におけるLINC00461の発現量をコントロールsiRNA(si-NC)導入時におけるLINC00461の発現量(「1」とする。)に対する相対値として示す。*:p<0.05、エラーバー:標準偏差。This figure shows the evaluation of the inhibitory effect of LINC00461 on glioblastoma cell lines (U87 and U251) by siRNAs si-LINC00461 # 1, si-LINC00461 # 2 and si-LINC00461 # 3 (Table 1 described later). (A: U87, B: U251). The expression level of LINC00461 48 hours after introduction of each siRNA is shown as a relative value to the expression level of LINC00461 (referred to as “1”) when control siRNA (si-NC) is introduced. *: P <0.05, error bar: standard deviation. この図は、膠芽腫細胞株U87およびU251に対するsi-LINC00461#1、si-LINC00461#2およびsi-LINC00461#3(後述の表1)による抗増殖効果の評価(A:U87、B:U251)を示す。各siRNA導入時から24時間毎における生きた腫瘍細胞数をsiRNA導入時における生きた腫瘍細胞数(「1」とする。)に対する相対値(相対腫瘍細胞数)として示す。*:p<0.05、エラーバー:標準偏差。This figure shows the evaluation of antiproliferative effect by si-LINC00461 # 1, si-LINC00461 # 2 and si-LINC00461 # 3 (Table 1 described later) against glioblastoma cell lines U87 and U251 (A: U87, B: U251). ). The number of viable tumor cells every 24 hours from the time of introduction of each siRNA is shown as a relative value (relative tumor cell number) to the number of viable tumor cells at the time of siRNA introduction (referred to as “1”). *: P <0.05, error bar: standard deviation. この図は、脳腫瘍同所移植マウスモデルにLINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤(核酸として25μg/マウス)を静脈内投与したときの、投与前(A)、投与直後(B)、投与3時間後(C)、および投与24時間後(D)、該ドラッグデリバリー製剤が脳腫瘍組織に特異的に集積することを示す。各時間のパネルにおいて、左3個体は、Alexa-647標識したLINC00461-LNAオリゴマー単体が投与されたマウスであり、右3個体は、Alexa-647標識したLINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤が投与されたマウスにおける結果である。This figure shows that when a drug delivery preparation (25 μg / mouse as a nucleic acid) encapsulating a LINC00461-LNA oligomer was intravenously administered to a brain tumor orthotopic transplant mouse model, before administration (A), immediately after administration (B), administration 3 It shows that the drug delivery preparation specifically accumulates in brain tumor tissue after time (C) and 24 hours after administration (D). In each time panel, the left 3 individuals are mice administered with Alexa-647-labeled LINC00461-LNA oligomer alone, and the right 3 individuals are the drug delivery formulation containing Alexa-647-labeled LINC00461-LNA oligomer. Results in administered mice. 図6Aは、脳腫瘍同所移植マウスモデルにLINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤(核酸として25μg/マウス)を3日ごとに1回の頻度で5回静脈内投与したのちのマウス脳組織をヘマトキシリン・エオジン(HE)染色した結果を示す。左3個体は、luciferase遺伝子(firefly GL3 luciferase)に対するLNAオリゴマーを内包したドラッグデリバリー製剤(対照)を投与したマウス脳組織であり、右3個体は、 LINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤(本発明)を投与したマウス脳組織である。点線は腫瘍領域を示し、スケールバーは1mmを示す。各脳腫瘍の体積を図6Bに示す。*は、統計的有意(n=3, p<0.01)を示す。6A shows a mouse brain tissue after a drug delivery preparation (25 μg / mouse as a nucleic acid) containing a LINC00461-LNA oligomer is intravenously administered once every three days to a brain tumor orthotopic transplant mouse model. The results of hematoxylin and eosin (HE) staining are shown. The left 3 individuals are mouse brain tissues administered with a drug delivery preparation (control) containing an LNA oligomer for the luciferase gene (firefly GL3 luciferase), and the right 3 individuals are a drug delivery preparation containing this LINC00461-LNA oligomer (this It is a mouse brain tissue administered with the invention. The dotted line indicates the tumor area and the scale bar indicates 1 mm. The volume of each brain tumor is shown in FIG. 6B. * Indicates statistical significance (n = 3, p <0.01). この図は、脳腫瘍同所移植マウスモデルにLINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤(核酸として25μg/マウス)を3日ごとに1回の頻度で5回静脈内投与したのちのマウス脳腫瘍組織におけるLINC00461の発現量を示す。luciferase遺伝子(firefly GL3 luciferase)に対するLNAオリゴマーを内包したドラッグデリバリー製剤(対照)を投与したマウス脳腫瘍組織におけるLINC00461の発現量(「1」とする。)に対する相対値として示す。*は、統計的有意(n=3,p<0.01)を示す。This figure shows a mouse brain tumor tissue after a drug delivery formulation (25 μg / mouse as a nucleic acid) containing a LINC00461-LNA oligomer is intravenously administered once every 3 days to a brain tumor orthotopic mouse model. The expression level of LINC00461 is shown. It is shown as a relative value with respect to the expression level (referred to as “1”) of LIN00461 in mouse brain tumor tissue administered with a drug delivery preparation (control) containing a LNA oligomer for the luciferase gene (firefly GL3 luciferase). * Indicates statistical significance (n = 3, p <0.01).
 本明細書は本願の優先権の基礎となる日本国特許出願番号2016-131073号の開示内容を包含する。 This specification includes the disclosure of Japanese Patent Application No. 2016-133103 that is the basis of the priority of the present application.
 本発明をさらに詳細に説明する。
1.LINC00461遺伝子の発現を抑制する核酸
 本発明の有効成分は、LINC00461遺伝子の発現を抑制する核酸である。以下に説明するように、LINC00461遺伝子を発現する腫瘍に対して、上記核酸は、該遺伝子の発現を抑制し、それによって該腫瘍の増殖を抑制する効果を有する。また、本発明に関わる核酸はすべて、文献等で公知の核酸オリゴマー合成技術(例、ホスホロアミダイト法、固相合成法など)を用いて作製できる。
The present invention will be described in further detail.
1. Nucleic acid that suppresses the expression of the LINC00461 gene The active ingredient of the present invention is a nucleic acid that suppresses the expression of the LINC00461 gene. As will be described below, the nucleic acid has the effect of suppressing the expression of the LINC00461 gene and thereby suppressing the growth of the tumor. In addition, all nucleic acids related to the present invention can be prepared using nucleic acid oligomer synthesis techniques (eg, phosphoramidite method, solid phase synthesis method, etc.) known in the literature.
 本明細書で使用する「LINC00461遺伝子」または「LINC00461」は、その転写後にlncRNA(long noncoding RNA)となる非翻訳RNAの一種であり、ヒトでは1~3種の変異型(variant 1,variant 2,variant 3)が知られており、例えばNCBI(米国)情報によると、登録番号NR_024384(variant 1;lncRNAの場合、配列番号37の塩基配列)、NR_024383(variant 2;lncRNAの場合、配列番号38の塩基配列)として記載される塩基配列などが報告されている。本明細書では、LINC00461遺伝子は、上記の塩基配列、或いは、これらの各塩基配列において1若しくは数個のヌクレオチドの欠失、置換、付加または挿入を含む塩基配列、或いは、上記の各塩基配列と70%以上、80%以上または90%以上、好ましくは95%以上、さらに好ましくは98%以上もしくは99%以上の配列同一性を有する塩基配列からなる天然バリアントである。LINC00461はまた、EyeLin1、Visc-1a、Visc-1b、Visc-2などとも称されており、この遺伝子はヒト5番染色体のヌクレオチド番号88666853...88666939に存在している(NCBI;NC_000005.10)。前述の通り、該遺伝子の機能については、これまで十分な知見が得られていなかった。 As used herein, “LINC00461 gene” or “LINC00461” is a kind of untranslated RNA that becomes lncRNA (long noncoding RNA) after transcription, and in humans 1 to 3 variants (variant 1, variant 2). , Variant 3), for example, according to NCBI (USA) information, registration number NR — 024384 (variant 1; base sequence of SEQ ID NO: 37 in the case of lncRNA), NR — 024383 (variant 2; sequence number of 38 in the case of ncRNA) Have been reported. In the present specification, the LINC00461 gene includes the above-described base sequence, a base sequence including deletion, substitution, addition or insertion of one or several nucleotides in each of these base sequences, or the above-described base sequences. It is a natural variant consisting of a base sequence having a sequence identity of 70% or more, 80% or more or 90% or more, preferably 95% or more, more preferably 98% or more or 99% or more. LINC00461 is also referred to as EyeLin1, Visc-1a, Visc-1b, Visc-2, etc., and this gene has nucleotide number 88666833 of human chromosome 5. . . 886669939 (NCBI; NC — 000005.10.). As described above, sufficient knowledge about the function of the gene has not been obtained so far.
 本明細書中で使用される「数個」とは、2~10の整数、好ましくは2~5の整数をいう。また、配列同一性は、塩基配列等の配列アラインメントをとるための公知のアルゴリズム、例えばBLAST、を使用して決定されうる。 As used herein, “several” means an integer of 2 to 10, preferably an integer of 2 to 5. Further, the sequence identity can be determined using a known algorithm such as BLAST for taking a sequence alignment such as a base sequence.
 本発明において、腫瘍細胞内でLINC00461遺伝子の発現を抑制する核酸は、例えば、RNA干渉(RNAi)作用を有する、siRNA若しくはその前駆体RNA、またはそれらの修飾RNA、或いは、LINC00461遺伝子の転写体RNAに対するsiRNAまたはその前駆体RNAをコードするDNAを含むベクターを包含する。上記核酸の他の例は、アンチセンスRNA若しくはアンチセンスDNA、該アンチセンスRNAをコードするDNA若しくは該アンチセンスDNAを含むベクター、またはその修飾核酸である。 In the present invention, the nucleic acid that suppresses the expression of the LINC00461 gene in tumor cells is, for example, siRNA or its precursor RNA having RNA interference (RNAi) action, or a modified RNA thereof, or a transcript RNA of the LINC00461 gene. And a vector containing DNA encoding siRNA or a precursor RNA thereof. Another example of the nucleic acid is antisense RNA or antisense DNA, DNA encoding the antisense RNA, a vector containing the antisense DNA, or a modified nucleic acid thereof.
 本発明における核酸は、腫瘍細胞においてLINC00461遺伝子の発現を抑制する、かつ、腫瘍の増殖を抑制するかぎり核酸の種類や核酸の配列は特定のものに限定されないが、上記被験体のLINC00461遺伝子の転写体RNAの塩基配列内の領域、例えばヒトLINC00461遺伝子の転写体RNAの塩基配列である、例えば配列番号37の塩基配列においてヌクレオチド番号1~150、700~1620または3200~3560の領域内の、あるいは配列番号38の塩基配列においてヌクレオチド番号500~1420または3050~3360の領域内の、連続する18~30ヌクレオチド、好ましくは20~25ヌクレオチド、さらに好ましくは21~23ヌクレオチドからなる配列を標的(target)とすることが好ましい。さらに具体的な標的配列は、例えば、配列番号25(配列番号37のヌクレオチド番号862~884または配列番号38のヌクレオチド番号664~686)、配列番号26(配列番号37の塩基番号1595~1617または配列番号38のヌクレオチド番号1393~1415)、配列番号27(配列番号37のヌクレオチド番号706~728または配列番号38のヌクレオチド番号504~526)、配列番号28(配列番号37のヌクレオチド番号46~68)、配列番号29(配列番号37のヌクレオチド番号114~136)、配列番号30(配列番号37のヌクレオチド番号1426~1448または配列番号38のヌクレオチド番号1234~1256)、配列番号31(配列番号37のヌクレオチド番号3269~3291または配列番号38のヌクレオチド番号3067~3089)、配列番号32(配列番号37のヌクレオチド番号3415~3437または配列番号38のヌクレオチド番号3203~3225)、配列番号33(配列番号37のヌクレオチド番号3450~3472または配列番号38のヌクレオチド番号3248~3270)、配列番号34(配列番号37のヌクレオチド番号3534~3556または配列番号38のヌクレオチド番号3332~3354)などの塩基配列を含む配列であるが、これらに限定されない。 The nucleic acid in the present invention is not limited to a specific type of nucleic acid or nucleic acid sequence as long as it suppresses the expression of the LINC00461 gene in tumor cells and suppresses the growth of the tumor, but the transcription of the LINC00461 gene of the subject is not limited. A region within the base sequence of the body RNA, for example, the base sequence of the transcript RNA of the human LINC00461 gene, for example within the region of nucleotide numbers 1-150, 700-1620 or 3200-3560 in the base sequence of SEQ ID NO: 37, or Target a sequence consisting of 18 to 30 nucleotides, preferably 20 to 25 nucleotides, more preferably 21 to 23 nucleotides in the region of nucleotide numbers 500 to 1420 or 3050 to 3360 in the base sequence of SEQ ID NO: 38 Toss It is preferable. More specific target sequences include, for example, SEQ ID NO: 25 (nucleotide numbers 862 to 884 of SEQ ID NO: 37 or nucleotide numbers 664 to 686 of SEQ ID NO: 38), SEQ ID NO: 26 (base numbers 1595 to 1617 of SEQ ID NO: 37, or sequence SEQ ID NO: 27 (nucleotide numbers 706-728 of SEQ ID NO: 37 or nucleotide numbers 504-526 of SEQ ID NO: 38), SEQ ID NO: 28 (nucleotide numbers 46-68 of SEQ ID NO: 37), SEQ ID NO: 29 (nucleotide numbers 114 to 136 of SEQ ID NO: 37), SEQ ID NO: 30 (nucleotide numbers 1426 to 1448 of SEQ ID NO: 37 or nucleotide numbers 1234 to 1256 of SEQ ID NO: 38), SEQ ID NO: 31 (nucleotide numbers of SEQ ID NO: 37) 3269-3 91 or nucleotide numbers 3067 to 3089 of SEQ ID NO: 38), SEQ ID NO: 32 (nucleotide numbers 3415 to 3437 of SEQ ID NO: 37 or nucleotide numbers 3203 to 3225 of SEQ ID NO: 38), SEQ ID NO: 33 (nucleotide numbers 3450 to 37 of SEQ ID NO: 37) 3472 or nucleotide numbers 3248 to 3270 of SEQ ID NO: 38), SEQ ID NO: 34 (nucleotide numbers 3534 to 3556 of SEQ ID NO: 37 or nucleotide numbers 3332 to 3354 of SEQ ID NO: 38), and the like. It is not limited.
 LINC00461に対しRNAi(RNA干渉)作用を有するsiRNAもしくはその前駆体RNAについて、siRNAは、LINC00461遺伝子の転写体RNAの一部に相補的な18~25ヌクレオチド、好ましくは20~24ヌクレオチド、さらに好ましくは21~23ヌクレオチドからなる、かつRNAi作用を有する、センスRNAとアンチセンスRNAとからなる二本鎖RNAである。センスRNAとアンチセンスRNAの各3'末端には、2~5ヌクレオチド、好ましくは2ヌクレオチドの突出末端(overhang)、例えばUU、CU、AC、UC、GC(DNAの場合、UはTである。)など、を有していてもよい。突出末端は、RISCと相互作用する可能性が指摘されている(W.R.Strapps et al.,Nucleic Acids Res.2010 Aug;38(14):4788-4797)。 Regarding siRNA having RNAi (RNA interference) action on LINC00461 or its precursor RNA, siRNA is complementary to a part of transcript RNA of LINC00461 gene, 18-25 nucleotides, preferably 20-24 nucleotides, more preferably It is a double-stranded RNA consisting of sense RNA and antisense RNA consisting of 21 to 23 nucleotides and having RNAi action. Each 3 ′ end of the sense RNA and antisense RNA has an overhang of 2-5 nucleotides, preferably 2 nucleotides, eg UU, CU, AC, UC, GC (in the case of DNA, U is T Etc.). It has been pointed out that the protruding end may interact with RISC (WR Strapps et al., Nucleic Acids Res. 2010 Aug; 38 (14): 4788-4797).
 RNAi作用は、当業界で一般的に使用される意味を有しており、短い二本鎖RNA(siRNA)がその塩基配列特異的に標的転写体RNAを分解し、その遺伝子発現を抑制する現象である。 The RNAi action has a meaning commonly used in the art, and a phenomenon in which a short double-stranded RNA (siRNA) degrades a target transcript RNA specifically in its base sequence and suppresses its gene expression. It is.
 上記前駆体RNAは、siRNAのpriRNA、preRNA、shRNAのいずれかである。priRNAは、LINC00461遺伝子に対する転写体RNA配列を有する。preRNAは、priRNAの酵素的プロセシングにより産生されるpreshRNAである。shRNAは、short hairpin RNAの略称であり、preshRNAから酵素的に産生された、siRNAと同じ配列のセンス鎖とアンチセンス鎖とのステム、ならびにヘアピンループからなる。shRNAのヘアピン構造は細胞機構によってsiRNAへと切断され、RNA誘導サイレンシング複合体(RISC)と結合し、この複合体はsiRNAと相補的な配列をもつ転写体RNAに結合し、それを切断する。 The precursor RNA is any one of siRNA priRNA, preRNA, and shRNA. The priRNA has a transcript RNA sequence for the LINC00461 gene. preRNA is a preshRNA produced by enzymatic processing of priRNA. shRNA is an abbreviation for short hairpin RNA, and consists of a stem of a sense strand and an antisense strand having the same sequence as siRNA and a hairpin loop, which are enzymatically produced from preshRNA. The shRNA hairpin structure is cleaved into siRNA by cellular machinery and binds to the RNA-induced silencing complex (RISC), which binds to and cleaves transcript RNA having a sequence complementary to the siRNA. .
 本発明の核酸は、例えば、配列番号5のアンチセンス鎖配列と配列番号6のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号7のアンチセンス鎖配列と配列番号8のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号9のアンチセンス鎖配列と配列番号10のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号11のアンチセンス鎖配列と配列番号12のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号13のアンチセンス鎖配列と配列番号14のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号15のアンチセンス鎖配列と配列番号16のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号17のアンチセンス鎖配列と配列番号18のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号19のアンチセンス鎖配列と配列番号20のセンス鎖配列からなるsiRNAまたはその修飾RNA、配列番号21のアンチセンス鎖配列と配列番号22のセンス鎖配列からなるsiRNAまたはその修飾RNA、ならびに、配列番号23のアンチセンス鎖配列と配列番号24のセンス鎖配列からなるsiRNAまたはその修飾RNAからなる群から選択されるいずれか1つのsiRNAまたはその修飾RNAあるいは2つ以上のsiRNAおよび/またはその修飾RNAの組み合わせである(ただし、上記の配列番号5~24の塩基配列の各3'末端の2つのヌクレオチドはDNAである。)。本発明は、これらの特定の配列を有するsiRNAまたはその修飾RNAからなる抗腫瘍性核酸も提供する。 The nucleic acid of the present invention comprises, for example, an siRNA comprising an antisense strand sequence of SEQ ID NO: 5 and a sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof, an antisense strand sequence of SEQ ID NO: 7 and a sense strand sequence of SEQ ID NO: 8. siRNA or a modified RNA thereof, siRNA comprising an antisense strand sequence of SEQ ID NO: 9 and a sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof, siRNA comprising an antisense strand sequence of SEQ ID NO: 11 and a sense strand sequence of SEQ ID NO: 12 or The modified RNA, the siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or its modified RNA, the siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modification thereof RNA, the antisense strand sequence of SEQ ID NO: 17 and the sequence of SEQ ID NO: 18 SiRNA comprising a strand sequence or a modified RNA thereof, siRNA comprising an antisense strand sequence of SEQ ID NO: 19 and a sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof, an antisense strand sequence of SEQ ID NO: 21 and a sense strand of SEQ ID NO: 22 SiRNA consisting of a sequence or a modified RNA thereof, and any one siRNA selected from the group consisting of an siRNA consisting of an antisense strand sequence of SEQ ID NO: 23 and a sense strand sequence of SEQ ID NO: 24 or a modified RNA thereof or a modified RNA thereof Alternatively, it is a combination of two or more siRNAs and / or modified RNAs thereof (however, the two nucleotides at the 3 ′ end of each of the nucleotide sequences of SEQ ID NOs: 5 to 24 are DNA). The present invention also provides an antitumor nucleic acid consisting of siRNA having these specific sequences or a modified RNA thereof.
 或いは、本発明の核酸は、LINC00461遺伝子の転写体RNAに対する、上記siRNA、その前駆体RNA若しくはアンチセンスRNAをコードするDNA、またはアンチセンスDNA、を含むベクターである。好ましい前駆体RNAはshRNAである。 Alternatively, the nucleic acid of the present invention is a vector comprising the siRNA, a DNA encoding the precursor RNA or the antisense RNA, or an antisense DNA with respect to the transcript RNA of the LINC00461 gene. A preferred precursor RNA is shRNA.
 上記ベクターは、細胞内に導入されたとき上記DNAを発現可能にする調節配列を含む、例えば、アデノ随伴ウイルス、レトロウイルス、レンチウイルス、センダイウイルスなどのウイルスベクター、或いは、プラスミド、人工染色体(例えば、細菌人工染色体(BAC),酵母人工染色体(YAC)、ヒト人工染色体(HAC)、またはマウス人工染色体(MAC))などの非ウイルスベクターのいずれかである。好ましいベクターは、安全性の面からプラスミド、センダイウイルスベクター、アデノ随伴ウイルスベクターなどである。プラスミドは、哺乳動物細胞、好ましくはヒト細胞で使用可能であり、かつ安全性が証明されているプラスミドが好ましい。具体的には、プラスミドベクターとしては、例えば特表2014-508515号公報に記載されるようなベクター、例えばpSilencer4.1-CMV(Ambion)、pcDNA3、pcDNA3.1/hyg、pHCMV/Zeo、pCR3.1、pEF1/His、pIND/GS、pRc/HCMV2、pSV40/Zeo2、pTRACER-HCMV、pUB6/V5-His、pVAX1、pZeoSV2、pCI、pSVL、pKSV-10、pBPV-1、pML2d、pTDT1などの非ウイルスベクターが挙げられるが、これらに限定されないものとする。 The vector contains a regulatory sequence that enables expression of the DNA when introduced into a cell, for example, a viral vector such as adeno-associated virus, retrovirus, lentivirus, Sendai virus, or a plasmid, artificial chromosome (for example, , Bacterial artificial chromosome (BAC), yeast artificial chromosome (YAC), human artificial chromosome (HAC), or mouse artificial chromosome (MAC)). Preferred vectors are plasmids, Sendai virus vectors, adeno-associated virus vectors and the like from the viewpoint of safety. The plasmid is preferably a plasmid that can be used in mammalian cells, preferably human cells, and has been proven to be safe. Specifically, plasmid vectors include, for example, vectors as described in JP-T-2014-508515, such as pSilencer 4.1-CMV (Ambion), pcDNA3, pcDNA3.1 / hyg, pHCMV / Zeo, pCR3. 1, pEF1 / His, pIND / GS, pRc / HCMV2, pSV40 / Zeo2, pTRACER-HCMV, pUB6 / V5-His, pVAX1, pZeoSV2, pCI, pSVL, pKSV-10, pBPV-1, pML2d, pML2d, etc. Examples include, but are not limited to, viral vectors.
 上記調節配列は、プロモーター、転写開始点、ターミネーターなどを含み、必要に応じてエンハンサー、選択マーカー配列などを含むことができる。プロモーターは、特定の宿主細胞内で上記DNAの転写開始を促進するかぎり任意の内因性若しくは外因性プロモーターを使用できるが、例えばU6もしくはH1プロモーターであり、これにより、細胞内に導入後にベクターは恒常的に発現されるし、また、娘細胞に受け継がれ、遺伝子サイレンシングの効果も受け継がれる。 The regulatory sequence includes a promoter, a transcription initiation point, a terminator, and the like, and can include an enhancer, a selectable marker sequence, and the like as necessary. As the promoter, any endogenous or exogenous promoter can be used as long as it promotes transcription initiation of the DNA in a specific host cell. For example, the promoter is a U6 or H1 promoter. It is also expressed by the daughter cell and inherited by the gene silencing effect.
 一般にRNAは、生体内で、例えば血中等でリボヌクレアーゼにより分解されやすいためにかなり不安定である。これを解消するため、本発明では、好ましくはセンス鎖およびアンチセンス鎖のヌクレオチドの修飾が行われる。修飾は、少なくとも1つの、好ましくは複数のヌクレオチドの修飾、例えば、塩基の修飾、糖の修飾、リン酸ジエステル部の修飾、またはそれらの組み合わせ、並びに/或いは、環状構造(二本鎖のステムと2つのループとからなる構造)、DNAを含むキメラ構造などを含むことができる。修飾は、非限定的に以下のものが挙げられる。 Generally, RNA is quite unstable because it is easily degraded by ribonuclease in vivo, for example, in blood. In order to eliminate this, in the present invention, nucleotide modification of the sense strand and the antisense strand is preferably performed. The modification may be at least one, preferably multiple nucleotide modifications, such as base modifications, sugar modifications, phosphodiester moiety modifications, or combinations thereof, and / or cyclic structures (double stranded stems and A structure composed of two loops), a chimeric structure containing DNA, and the like. Modifications include, but are not limited to:
 RNAもDNAもともに糖、塩基およびホスホジエステル結合からなるヌクレオチドの連鎖によって構成される核酸であり、それらの核酸の構造上の違いは、ヌクレオチド中の糖にあり、すなわち、RNAの糖はリボースであり、一方DNAの糖は2'位の水酸基が水素で置換された2'-デオキシリボースであり、またさらなる違いは塩基、すなわち、RNAの塩基はアデニン(A)、ウラシル(U)、グアニン(G)およびシトシン(C)から構成され、一方DNAの塩基は、アデニン(A)、チミン(T)、グアニン(G)およびシトシン(C)から構成されることにある。 Both RNA and DNA are nucleic acids composed of a chain of nucleotides consisting of sugar, base and phosphodiester bonds, and the structural differences between these nucleic acids are in the sugars in the nucleotides, that is, the sugar in RNA is ribose. On the other hand, the sugar of DNA is 2′-deoxyribose in which the hydroxyl group at the 2 ′ position is replaced with hydrogen, and a further difference is that the bases of RNA are adenine (A), uracil (U), guanine ( G) and cytosine (C), while the base of DNA consists of adenine (A), thymine (T), guanine (G) and cytosine (C).
 バックボーンであるリン酸ジエステル部の修飾には、ホスホジエステル結合に代えて例えばホスホロチオエート、ホスホロジチオエート、アルキルホスホネート、またはホスホロアミデート結合とする修飾による置換が含まれる。 The modification of the phosphodiester moiety as the backbone includes substitution by modification with, for example, a phosphorothioate, phosphorodithioate, alkylphosphonate, or phosphoramidate bond instead of the phosphodiester bond.
 上記RNAおよびDNAの塩基および糖の修飾には、特表2007-525192号公報に例示されるような、2’-デオキシ-2’-ハロ(例えばフルオロ、クロロまたはブロモ)ヌクレオチド、2’-デオキシ-2’-ハロ(例えばフルオロ、クロロまたはブロモ)ピリミジンヌクレオチド、2’-デオキシ-2’-ハロ(例えばフルオロ、クロロまたはブロモ)シチジンヌクレオチド、2’-デオキシ-2’-ハロ(例えばフルオロ、クロロまたはブロモ)ウリジンヌクレオチド、2’-デオキシ-2’-ハロ(例えばフルオロ、クロロまたはブロモ)グアノシンヌクレオチド、2’-O-メチルプリンヌクレオチド、2'-デオキシリボヌクレオチド、ロックド核酸ヌクレオチド(Locked Nucleic Acid(LNA);例えば2'-O,4'-Cメチレンブリッジ(-O-CH-)修飾ヌクレオチド、2'-O,4'-Cエチレンブリッジ(-O-CHCH-)修飾ヌクレオチド、等)、2’-メトキシエチルヌクレオチド、4’-チオヌクレオチド、2’-メトキシエトキシ(2’-MOE)ヌクレオチド、2’-メトキシ(2’-OMe)ヌクレオチド、2’-デオキシ-2’-クロロヌクレオチド、2’-アジドヌクレオチドなどが挙げられる。ここで、2'-O-基は、2'-S-基で置換されてもよい。また、2'-修飾ヌクレオチドについて、上記例示に加えて、例えば特表2010-507579号公報に記載されるような、糖の2'位を、例えば、ハロゲン、アリル、アミノ、アジド、アセトキシ、アルキル、アルコキシ、カルボキシ、アシル、カルボニルオキシ、ベンジル、フェニル、ニトロ、チオール、チオアルコキシ、アリール、アルケニル、アルキニル、シアノ、OCN、CF、OCF、N(R)-アルキル、O-アルケニル、S-アルケニル、N(R)-アルケニル、O-アルキニル、S-アルキニル、N(R)-アルキニル、O-アルキレニル-O-アルキル、アルキルアリール、アラルキル、O-アルキルアリール、O-アラルキル、O(CHSCH、O-(CH-O-N(R)(R)、またはO-CH-C(=O)-N(R)(R)によって置換しうる。ここで、各RとRは、独立的に、H、アミノ保護基、または置換若しくは非置換C-C10アルキルである。 The base and sugar modifications of RNA and DNA described above include 2′-deoxy-2′-halo (eg, fluoro, chloro or bromo) nucleotides, 2′-deoxy as exemplified in JP-T-2007-525192. -2'-halo (eg fluoro, chloro or bromo) pyrimidine nucleotides, 2'-deoxy-2'-halo (eg fluoro, chloro or bromo) cytidine nucleotides, 2'-deoxy-2'-halo (eg fluoro, chloro) Or bromo) uridine nucleotides, 2′-deoxy-2′-halo (eg, fluoro, chloro or bromo) guanosine nucleotides, 2′-O-methylpurine nucleotides, 2′-deoxyribonucleotides, locked nucleic acid nucleotides (LNA) For example 2′-O, '-C-methylene bridge (-O-CH 2 -) modified nucleotides, 2'-O, 4'-C ethylene bridge (-O-CH 2 CH 2 - ) modified nucleotides, etc.), 2'-methoxyethyl nucleotides, 4'-thionucleotides, 2'-methoxyethoxy (2'-MOE) nucleotides, 2'-methoxy (2'-OMe) nucleotides, 2'-deoxy-2'-chloronucleotides, 2'-azido nucleotides and the like It is done. Here, the 2′-O— group may be substituted with a 2′-S— group. For 2′-modified nucleotides, in addition to the above examples, the 2 ′ position of the sugar as described in, for example, JP-T-2010-507579 is substituted with, for example, halogen, allyl, amino, azide, acetoxy, alkyl. , Alkoxy, carboxy, acyl, carbonyloxy, benzyl, phenyl, nitro, thiol, thioalkoxy, aryl, alkenyl, alkynyl, cyano, OCN, CF 3 , OCF 3 , N (R m ) -alkyl, O-alkenyl, S -Alkenyl, N (R m ) -alkenyl, O-alkynyl, S-alkynyl, N (R m ) -alkynyl, O-alkylenyl-O-alkyl, alkylaryl, aralkyl, O-alkylaryl, O-aralkyl, O (CH 2) 2 SCH 3, O- (CH 2) 2 -O-N (R m) R n), or O-CH 2 -C (= O ) can be replaced by -N (R m) (R n ). Here, each R m and R n is independently H, an amino protecting group, or a substituted or unsubstituted C 1 -C 10 alkyl.
 LNA修飾ヌクレオチドは、今西武(Takeshi Imanishi)らによって開発された人工核酸(M.Abdur Rahman,Sayori Seki,Satoshi Obika,Haruhisa Yoshikawa,Kazuyuki Miyashita,Takeshi Imanishi:「Design,synthesis and properties of 2',4'-BNA:A bridged nucleic acid analogue」J.Am.Chem.Soc.130.4886-4896(2008))であり、本発明のsiRNAの塩基配列中の糖部にLNA(「BNA(Bridged Nucleic Acid)」とも称する。)を導入したヌクレオチドは、著しくヌクレアーゼ耐性を有するものとなる。 LNA-modified nucleotides are artificial nucleic acids developed by Takeshi Imanishi et al. (M. Abdur Rahman, Sayori Seki, Satoshi Obika, HaruhisashiYoshikawa, Kazuyuki Miki). '-BNA: A bridged nucleic acid analog "J. Am. Chem. Soc. 130.4886-4896 (2008)), and LNA (" BNA (Bridged Nucleic Acid) in the nucleotide sequence of the siRNA of the present invention ". ) "). The nucleotide introduced with) Comes to have a nuclease-resistant.
 本発明の核酸はまた、siRNAの塩基配列中の一部にデオキシリボヌクレオチド配列を含むRNA/DNAキメラ構造を有することができる。デオキシリボヌクレオチド配列を含むことによってリボヌクレオチド配列のみと比べてよりヌクレアーゼ耐性とすることが可能になる(例えば特許第3803318号公報)。デオキシリボヌクレオチドは、siRNAの塩基配列のアンチセンス鎖またはセンス鎖の全ヌクレオチド数あたり30%以下、好ましくは20%以下の割合で含むことができる。デオキシリボヌクレオチドは、siRNAのアンチセンス鎖およびセンス鎖の両方に含まれていてもよいし、或いはセンス鎖のみに含まれていてもよい。また、siRNAの塩基配列中のデオキシリボヌクレオチドは3'側に存在することが好ましく、例えば3'末端に突出末端として2~4つのデオキシリボヌクレオチドが連続する配列で存在してもよい。 The nucleic acid of the present invention can also have an RNA / DNA chimera structure containing a deoxyribonucleotide sequence in a part of the base sequence of siRNA. By including the deoxyribonucleotide sequence, it becomes possible to make it more nuclease resistant than the ribonucleotide sequence alone (for example, Japanese Patent No. 3803318). Deoxyribonucleotides can be included at a ratio of 30% or less, preferably 20% or less, based on the total number of nucleotides in the antisense strand or sense strand of the siRNA base sequence. The deoxyribonucleotide may be contained in both the antisense strand and the sense strand of siRNA, or may be contained only in the sense strand. Further, deoxyribonucleotides in the base sequence of siRNA are preferably present on the 3 ′ side. For example, they may be present in a sequence in which 2 to 4 deoxyribonucleotides are continuous as protruding ends at the 3 ′ end.
 上記環状構造(すなわち、二本鎖のステムと2つのループとからなる構造)を有する核酸は、いわゆるダンベル型の一本鎖RNAである。ステムは、siRNAのセンス鎖配列とアンチセンス鎖配列の互いに相補的な配列から構成される。ループは、ステムの各末端部に連結された例えば1ループあたり非相補的な約2~約15ヌクレオチドから構成される(例えば米国特許第5,168,053号明細書、米国特許第5,190,931号明細書、米国特許第5,135,917号明細書、Smith and Clusel et al.(1993)Nucl.Acids Res.21:3405-3411、および米国特許第5,087,617号明細書)。 The nucleic acid having the above circular structure (that is, a structure comprising a double-stranded stem and two loops) is a so-called dumbbell-type single-stranded RNA. The stem is composed of complementary sequences of the sense strand sequence and the antisense strand sequence of siRNA. The loop is composed of, for example, about 2 to about 15 nucleotides that are non-complementary per loop linked to each end of the stem (see, eg, US Pat. No. 5,168,053, US Pat. No. 5,190). 931, U.S. Pat. No. 5,135,917, Smith and Clausel et al. (1993) Nucl. Acids Res. 21: 3405-3411, and U.S. Pat. No. 5,087,617. ).
 上記核酸の他の例として、上記のアンチセンスRNA(若しくはアンチセンスDNA)、またはその修飾核酸などを挙げることができる。 Other examples of the nucleic acid include the antisense RNA (or antisense DNA) described above or a modified nucleic acid thereof.
 アンチセンスRNA(若しくはアンチセンスDNA)は、LINC00461遺伝子の転写産物であるlncRNAを標的とする一本鎖核酸である。該lncRNAを標的とする上記siRNAはlncRNAを分解するのに対し、アンチセンスRNA(若しくはアンチセンスDNA)は上記のlncRNA機能を抑制若しくは阻害する。生体内での安定性を高めるために、アンチセンスRNA若しくはアンチセンスDNAは、RNA/DNAキメラ構造、および/または、1若しくは複数の上記の修飾ヌクレオチドを含む修飾誘導体が好ましい。修飾ヌクレオチドの具体例は上に記載したものであり、さらに好ましい例は、ホスホロチオエート修飾と、2’-MOEヌクレオチド、2’-OMeヌクレオチドまたはLNA修飾ヌクレオチドとの組み合わせである。アンチセンスRNA(若しくはアンチセンスDNA)またはその修飾誘導体の塩基長は、通常12~100ヌクレオチド、好ましくは15~50ヌクレオチド、より好ましくは、20~30ヌクレオチドである。塩基長として100ヌクレオチドを超える長さとすることも可能であるが、特に製造コストの面で不利となるので、上記の範囲が適当である。アンチセンスRNA若しくはアンチセンスDNAの配列は、LINC00461遺伝子の転写体lncRNAまたはそれをコードするDNAの塩基配列、例えば配列番号37または38のヒトLINC00461由来の配列、あるいは、これらの各塩基配列と70%以上、80%以上または90%以上、好ましくは95%以上、さらに好ましくは98%以上もしくは99%以上の配列同一性を有する塩基配列からなる天然バリアントであるLINC00461の塩基配列から、上記サイズの連続する塩基配列を選択し、この配列に相補的な塩基配列またはその修飾塩基配列とすることができる。標的として、上記のとおり、ヒトLINC00461遺伝子の転写体RNAの塩基配列である例えば配列番号37の塩基配列においてヌクレオチド番号1~150、700~1620または3200~3560の領域内の、あるいは配列番号38の塩基配列においてヌクレオチド番号500~1420または3050~3360の領域内の連続する19~30ヌクレオチド、好ましくは20~25ヌクレオチド、さらに好ましくは21~23ヌクレオチドからなる配列を標的とすることが好ましい。具体的な標的配列は、上記のとおり、配列番号25~34のいずれかのヌクレオチド配列を含む配列である。 Antisense RNA (or antisense DNA) is a single-stranded nucleic acid that targets lncRNA, which is a transcription product of the LINC00461 gene. The siRNA targeting the lncRNA degrades the lncRNA, whereas the antisense RNA (or antisense DNA) suppresses or inhibits the lncRNA function. In order to increase stability in vivo, the antisense RNA or antisense DNA is preferably an RNA / DNA chimeric structure and / or a modified derivative containing one or more of the above-mentioned modified nucleotides. Specific examples of modified nucleotides are those described above, and a more preferred example is a combination of phosphorothioate modifications and 2'-MOE nucleotides, 2'-OMe nucleotides or LNA modified nucleotides. The base length of antisense RNA (or antisense DNA) or a modified derivative thereof is usually 12 to 100 nucleotides, preferably 15 to 50 nucleotides, more preferably 20 to 30 nucleotides. Although the base length can be longer than 100 nucleotides, the above range is suitable because it is disadvantageous particularly in terms of production cost. The sequence of the antisense RNA or the antisense DNA is the nucleotide sequence of the LINC00461 gene transcript lncRNA or the DNA encoding it, for example, the sequence derived from human LINC00461 of SEQ ID NO: 37 or 38, or each of these nucleotide sequences and 70% 80% or more or 90% or more, preferably 95% or more, more preferably 98% or more or 99% or more, from the base sequence of LINC00461, which is a natural variant consisting of a base sequence having sequence identity, The base sequence to be selected can be selected to be a base sequence complementary to this sequence or a modified base sequence thereof. As a target, as described above, the nucleotide sequence of the transcript RNA of the human LINC00461 gene, for example, in the nucleotide sequence of SEQ ID NO: 37, in the region of nucleotide numbers 1-150, 700-1620, 3200-3560, or of SEQ ID NO: 38 It is preferable to target a sequence consisting of 19 to 30 nucleotides, preferably 20 to 25 nucleotides, more preferably 21 to 23 nucleotides in the region of nucleotide numbers 500 to 1420 or 3050 to 3360 in the base sequence. A specific target sequence is a sequence including any one of the nucleotide sequences of SEQ ID NOs: 25 to 34 as described above.
2.腫瘍の治療または予防のための医薬組成物
 本発明の医薬組成物は、腫瘍細胞において上記LINC00461遺伝子の発現を抑制する、それによって腫瘍の増殖を抑制する核酸を有効成分として含むことを特徴とする。本発明の組成物は腫瘍細胞を標的とするため、腫瘍の増殖は抑制され、腫瘍は退縮されうるし、また場合により、腫瘍の転移も抑制されうる。本発明では、LINC00461遺伝子の発現はステージ1~2の早期癌において認められる(図1)ため、早期癌に対しても有効である。このため、本発明の医薬組成物またはその有効成分である核酸を、LINC00461遺伝子を発現する腫瘍もしくは癌を有するまたは有することが疑われる被験体(例、ヒト)に投与することを含む、該腫瘍もしくは癌の治療または予防のための方法も提供される。さらにまた、本発明の有効成分である核酸を、本発明の医薬組成物の製造に使用することができる。
2. Pharmaceutical composition for treating or preventing tumors The pharmaceutical composition of the present invention comprises a nucleic acid that suppresses the expression of the LINC00461 gene in tumor cells and thereby suppresses tumor growth as an active ingredient. . Since the composition of the present invention targets tumor cells, tumor growth can be suppressed, tumors can be regressed, and tumor metastasis can also be suppressed in some cases. In the present invention, since the expression of the LINC00461 gene is observed in early stage cancers of stages 1 and 2 (FIG. 1), it is also effective for early stage cancers. Therefore, the tumor comprising the administration of the pharmaceutical composition of the present invention or the nucleic acid that is an active ingredient thereof to a subject (eg, human) having or suspected of having a tumor or cancer expressing the LINC00461 gene Alternatively, a method for the treatment or prevention of cancer is also provided. Furthermore, the nucleic acid which is the active ingredient of the present invention can be used for the production of the pharmaceutical composition of the present invention.
 上記核酸は、それ自体を担体等とともに混合して含む組成物の形態に製剤化されてもよいし、或いは、該核酸をデリバリーシステムに組み入れるように製剤化されてもよい。 The nucleic acid may be formulated in the form of a composition containing itself mixed with a carrier or the like, or may be formulated so as to be incorporated into a delivery system.
 上記核酸の用量は、非限定的に、ヒトの場合、1回あたり、かつ成人1kg体重あたり例えば約0.01mg~約1,000mgであるが、一般に用量または投与量は、被験体の性別、年齢、体重、症状、重症度、副作用などを考慮して選択されるべきである。また、投与は、例えば1週間、2週間、3週間、または4週間間隔、或いは、必要であれば1か月を超える間隔で行うことができる。 The dose of the nucleic acid is, but is not limited to, in humans, for example, about 0.01 mg to about 1,000 mg per dose and per kg body weight for an adult, but generally the dose or dose is determined by the subject's gender, It should be selected in consideration of age, weight, symptoms, severity, side effects, etc. In addition, administration can be performed, for example, at intervals of 1 week, 2 weeks, 3 weeks, or 4 weeks, or at intervals exceeding 1 month if necessary.
 製剤化において、核酸有効成分の他に、担体または希釈剤、並びに添加剤を混合して医薬組成物の形態としうる。必要に応じて、該医薬組成物と、他の抗癌剤(例えば化学療法剤、抗体医薬、等)および/または他の治療関連薬剤とを組み合わせた、いわゆる医薬キットとすることもできる。 In formulation, in addition to the nucleic acid active ingredient, a carrier or diluent and an additive can be mixed to form a pharmaceutical composition. If necessary, a so-called pharmaceutical kit can be prepared by combining the pharmaceutical composition with other anticancer agents (for example, chemotherapeutic agents, antibody drugs, etc.) and / or other treatment-related drugs.
 担体または希釈剤は、製剤の形態、すなわち通常、固体製剤、半固体製剤または液体(若しくは、溶液)製剤、或いは剤型(若しくは、投与形態)、に応じて変化しうる。剤型として、錠剤、カプセル剤、顆粒剤、散剤、シロップ剤、ゲル剤等の経口投与製剤、または、注射剤、点滴剤、経粘膜投与剤(例えば、経鼻投与剤等)、経皮投与剤、リポソーム剤、経直腸投与剤(若しくは坐剤)、吸入剤、軟膏剤、ローション剤等による非経口投与剤を挙げることができる。 The carrier or diluent can vary depending on the form of the formulation, ie, usually a solid formulation, a semi-solid formulation or a liquid (or solution) formulation, or a dosage form (or dosage form). As the dosage form, oral preparations such as tablets, capsules, granules, powders, syrups and gels, or injections, drops, transmucosal agents (eg, nasal agents), transdermal administration And parenteral administration agents such as pills, liposomes, rectal administration (or suppositories), inhalants, ointments, lotions and the like.
 液体製剤用の希釈剤には、水性溶媒の場合には、例えば、蒸留水、滅菌水、リンゲル液、生理食塩水などが含まれる。必要に応じて、エタノールを適量混合することができる。リポソーム製剤、難水性製剤等の場合には、有機溶媒単独でまたは有機溶媒/水混合液が担体または賦形剤として使用されうる。有機溶媒の例には、エタノール、イソプロパノール、イソブタノール、sec-ブタノール、tert-ブタノール、アセトニトリル、アセトン、ケトン、ジメチルスルホキシド、ジメチルホルムアミド、グリセロール、ポリエチレングリコール、カカオ脂や大豆油などの油脂、並びにこれらの組み合わせが含まれる。 In the case of an aqueous solvent, the diluent for liquid preparation includes, for example, distilled water, sterilized water, Ringer's solution, physiological saline and the like. If necessary, an appropriate amount of ethanol can be mixed. In the case of liposome preparations, poorly water-soluble preparations and the like, an organic solvent alone or an organic solvent / water mixture can be used as a carrier or an excipient. Examples of organic solvents include ethanol, isopropanol, isobutanol, sec-butanol, tert-butanol, acetonitrile, acetone, ketone, dimethyl sulfoxide, dimethylformamide, glycerol, polyethylene glycol, fats and oils such as cocoa butter and soybean oil, and these Is included.
 固体製剤用の担体または賦形剤の例は、マルトース、ラクトース、スクロース、デンプン、ゼラチン、トラガカントゴム、メチルセルロース、ヒドロキシプロピルメチルセルロース、カルボキシメチルセルロースナトリウム、等を含む。 Examples of carriers or excipients for solid formulations include maltose, lactose, sucrose, starch, gelatin, tragacanth gum, methylcellulose, hydroxypropylmethylcellulose, sodium carboxymethylcellulose, and the like.
 添加剤には、製薬上許容されうる、例えば、賦形剤、増量剤、充填剤、結合剤、湿潤剤、崩壊剤、潤滑剤、乳化剤、分散剤、緩衝剤、保存剤、溶解補助剤、防腐剤、矯味矯臭剤、無痛化剤、安定化剤、等張化剤、pH調整剤、等が挙げられる。 Additives are pharmaceutically acceptable, for example, excipients, extenders, fillers, binders, wetting agents, disintegrants, lubricants, emulsifiers, dispersants, buffers, preservatives, solubilizers, Examples include antiseptics, flavoring agents, soothing agents, stabilizers, tonicity agents, pH adjusters, and the like.
 投与経路は、例えば、静脈内投与、動脈内投与、経口投与、経肺投与、組織内投与、経皮投与、経粘膜投与、直腸内投与、腹腔内投与、脳内投与などを挙げることができる。それらの中で、特に静脈内投与、経皮投与、経粘膜投与が好ましい。 Examples of the administration route include intravenous administration, intraarterial administration, oral administration, transpulmonary administration, tissue administration, transdermal administration, transmucosal administration, rectal administration, intraperitoneal administration, intracerebral administration, and the like. . Among these, intravenous administration, transdermal administration, and transmucosal administration are particularly preferable.
 本発明の核酸を生体内のヌクレアーゼから保護するために、例えばリポソーム内に該核酸を封入することができる。リポソームは、通常、カチオン性リポソームが使用される(Y.TAKAHASHI et al.,YAKUGAKU ZASSHI 127(10)1525―1531(2007))。カチオン性リポソームは陽性に荷電しており、陰性に荷電した細胞膜と静電気的に結合しやすく、受動的に細胞膜に結合したリポソーム複合体は、エンドサイトーシスを介して細胞質内に取り込まれ、エンドゾームから抜け出して細胞質内に放出されると考えられている。また、ナノサイズのポリマーミセルタイプドラッグデリバリー材料などの非リポソームドラッグデリバリー材料に本発明の核酸を含有若しくは内包させてもよい(再表2007/099660、再表2007/099661、再表2009/113645、WO2013/162041、再表2010/093036、再表2012/005376)。 In order to protect the nucleic acid of the present invention from nucleases in vivo, the nucleic acid can be encapsulated in, for example, liposomes. As the liposome, a cationic liposome is usually used (Y. TAKAHASHI et al., YAKUGAKU ZASSHI 127 (10) 1525-1531 (2007)). Cationic liposomes are positively charged and easily bind electrostatically to negatively charged cell membranes, and passively bound liposome membranes are taken up into the cytoplasm via endocytosis and are transferred from the endosomes. It is thought that it escapes and is released into the cytoplasm. Further, the nucleic acid of the present invention may be contained or encapsulated in a non-liposomal drug delivery material such as a nano-sized polymer micelle type drug delivery material (see Table 2007/099660, Table 2007/999661, Table 2009/113645, WO2013 / 162041, Table 2010/093036, Table 2012/005376).
 本発明はさらに、抗癌剤としての上記組成物を被験体に投与することを含む、LINC00461遺伝子を正常組織と比べてより高発現する腫瘍を有する被験体を治療するための方法を提供する。 The present invention further provides a method for treating a subject having a tumor that highly expresses the LINC00461 gene as compared with a normal tissue, comprising administering the above composition as an anticancer agent to the subject.
 本明細書で使用される「被験体」は、ヒト、ペット動物(イヌ、ネコなど)、動物園で飼育される動物などを含む哺乳動物であり、好ましくはヒトである。 As used herein, a “subject” is a mammal, including humans, pet animals (dogs, cats, etc.), animals kept in zoos, and preferably humans.
 本発明によって治療しうる上記腫瘍は、LINC00461遺伝子を発現する悪性腫瘍、例えば、脳腫瘍、乳癌、大腸癌、前立腺癌、肝臓癌、肺癌、白血病、子宮頸癌およびリンパ腫など、好ましくは脳腫瘍(例えば膠芽腫)であるが、これらの腫瘍に限定されない。 The tumors that can be treated according to the present invention are preferably malignant tumors expressing the LINC00461 gene, such as brain tumors, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma, preferably brain tumors (eg Blastoma), but is not limited to these tumors.
 例えば膠芽腫などの脳腫瘍の細胞での上記核酸の使用により優れた細胞増殖抑制効果が確認されたことから、本発明の核酸を有効成分とする組成物は、腫瘍細胞を標的とする抗癌剤としても優れたものであることが判明した。 For example, the use of the above-described nucleic acid in cells of brain tumors such as glioblastoma has confirmed an excellent cell growth-suppressing effect. Therefore, the composition containing the nucleic acid of the present invention as an active ingredient is used as an anticancer agent targeting tumor cells. Was also found to be excellent.
 組成物、被験体、投与量、投与経路、投与回数などは、上で記載したとおりである。 Composition, subject, dose, route of administration, number of doses, etc. are as described above.
 本発明の組成物は、化学療法剤、医薬抗体、免疫チェックポイント阻害剤などの他の癌治療剤の投与と組み合わせて被験体に投与することができる。該組成物の投与は、化学療法剤、医薬抗体、免疫チェックポイント阻害剤などの他の癌治療剤の投与の前に、同時に、または後に行うことができる。 The composition of the present invention can be administered to a subject in combination with administration of other cancer therapeutic agents such as chemotherapeutic agents, pharmaceutical antibodies, immune checkpoint inhibitors. Administration of the composition can occur before, simultaneously with, or after administration of other cancer therapeutic agents such as chemotherapeutic agents, pharmaceutical antibodies, immune checkpoint inhibitors.
 化学療法剤の例は、非限定的に、特表2014-508515号公報に記載されるような抗癌剤、例えば、トポイソメラーゼ阻害剤(例えば、エトポシド、ランプトテシン、トポテカン、テニポシド、マイトキサントロン、等)、DNAアルキル化剤(例えば、シスプラチン、メクロレタミン、シクロホスファミド、イホスファミド、メルファラン、コランブシル、ブスルファン、チオテパ、カルムスチン、ロムスチン、カルボプラチン、ダカルバジン、プロカルバジン、等)、DNA鎖切断誘発剤(例えば、ブレオマイシン、ドキソルビシン、ダウノルビシン、イダルビシン、マイトマイシンC、等)、微小管阻害剤(例えば、ビンクリスチン、ビンブラスチン、等)、抗代謝剤(例えば、シタラビン、メトトレキセート、ヒドロキシウレア、5-フルオロウラシル、フロックスウリジン、6-チオグアニン、6-メルカプトプリン、フルダラビン、ペントスタチン、クロロデオキシアデノシン、等)、アントラサイクリン、ビンカアルカロイド、エピポフィロトキシン、テモゾロマイドなどである。 Examples of chemotherapeutic agents include, but are not limited to, anticancer agents as described in JP-T-2014-508515, for example, topoisomerase inhibitors (for example, etoposide, lamptothecin, topotecan, teniposide, mitoxantrone, etc.), DNA alkylating agents (eg, cisplatin, mechloretamine, cyclophosphamide, ifosfamide, melphalan, columbucil, busulfan, thiotepa, carmustine, lomustine, carboplatin, dacarbazine, procarbazine, etc.), DNA strand breakage inducers (eg, bleomycin, Doxorubicin, daunorubicin, idarubicin, mitomycin C, etc.), microtubule inhibitors (eg, vincristine, vinblastine, etc.), antimetabolites (eg, cytarabine, methotrexate, hydroxyu) A, 5-fluorouracil, Phlox uridine, 6-thioguanine, 6-mercaptopurine, fludarabine, pentostatin, chlorodeoxyadenosine, etc.), anthracyclines, vinca alkaloids, epi Po podophyllotoxin, temozolomide, and the like.
 医薬抗体の例は、非限定的に、トラスツズマブ、ベバシツズマブ、パニツムマブ、セツキマブ、リツキマブ、モガムリズマブを含む種々の市販抗体および開発・上市される抗体である。 Examples of pharmaceutical antibodies include, but are not limited to, various commercially available antibodies including trastuzumab, bevacizuzumab, panitumumab, cetuximab, rituximab, and mogamulizumab, as well as developed and marketed antibodies.
 免疫チェックポイント阻害剤は、癌細胞が免疫細胞からの攻撃を回避することを抑制することによって癌細胞に対する免疫細胞の本来の攻撃力を回復するための薬剤であり、例えばPD-1(programmed cell death-1)やPD-L1(programmed death-ligand 1)に対する抗体(例えばニボルマブ、atezolizumab、等 )などを包含する。 An immune checkpoint inhibitor is a drug for restoring the original attack power of immune cells against cancer cells by suppressing the cancer cells from avoiding attacks from immune cells. For example, PD-1 (programmed cell) antibodies to death-1) and PD-L1 (programmed death-ligand 1) (eg, nivolumab, atezolizumab, etc.)   ) And the like.
 上記薬剤の投与量は、被験体の性別、年齢、体重、症状、重症度、副作用などを考慮して選択されるか、或いは、臨床現場で実際に使用される範囲の用量である。 The dosage of the above drug is selected in consideration of the sex, age, weight, symptom, severity, side effects, etc. of the subject, or is in a range actually used in clinical practice.
 以下の実施例を参照しながら、本発明をさらに具体的に説明するが、本発明の範囲は該実施例によって制限されないものとする。 The present invention will be described more specifically with reference to the following examples. However, the scope of the present invention is not limited by the examples.
[実施例1]
<神経膠腫形成マウスモデルにおけるC130071C03Rik発現の継時的変化>
 公共のデータベース(GENCODE)に登録されている15,876のlncRNAからヒトとマウスで保存された塩基配列(相同性,>80%、塩基長,>200bp)を有する134のlncRNAを同定した。さらにヒト膠芽腫細胞とヒト神経幹細胞のRNAシークエンシングの結果を照らし合わせて、膠芽腫細胞で高発現するLINC00461を同定した。なお、C130071C03Rikは、マウス由来の、LINC00461(ヒト)のオーソログである。
[Example 1]
<Changes in C130071C03Rik expression over time in a mouse model of glioma formation>
From 15876 lncRNAs registered in a public database (GENCODE), 134 lncRNAs having base sequences conserved in humans and mice (homology,> 80%, base length,> 200 bp) were identified. Furthermore, LINC00461 highly expressed in glioblastoma cells was identified by comparing the results of RNA sequencing of human glioblastoma cells and human neural stem cells. C130071C03Rik is an orthologue of LINC00461 (human) derived from a mouse.
 次に、本発明者らは、神経膠腫を自然発生する遺伝子改変マウスモデル(p53-/-,Nf1-/-)を用いて以下の実験を行った(Zong H et al. Cell, 2011, 146: 209-221)。 Next, the present inventors conducted the following experiment using a genetically modified mouse model (p53 − / −, Nf1 − / −) that naturally causes glioma (Zong H et al. Cell, 2011, 146: 209-221).
 神経膠腫マウスモデルは、The Jackson Laboratoryより購入した3系統の遺伝子変異マウス(#17530,(STOCK Iis2tm1(ACTB-tdTomato,-EGFP)LuoTrp53tm1TyjNf1tm1Par/J)、#4600,(FVB-Tg(GFAP-cre)25MesJ)、#13749,(STOCK Iis2tm1(ACTB-EGFP,-tdTomato)Luo/J)を交配し、作製した。 The glioma mouse model includes three strains of genetically-mutated mice purchased from The Jackson Laboratory (# 17530, (STOCK Iis2tm1 (ACTB-tdTomato, -EGFP) LuoTrp53tm1TyjNf1tm1Par / J), # 4600T (F-Bcg), # 4600T ) 25 MesJ), # 13749, (STOCK Iis2tm1 (ACTB-EGFP, -tdTomato) Luo / J).
 生後20日、60日、90日、120日に神経膠腫形成マウスモデルの大脳を摘出した。1個体の大脳に対してEarle’s 10×BSS1ml、EDTA(0.5M)10μl、HEPES100μl、NaHCO(1.0M)260μl、D(+)glucose(×20)500μl、L-システイン(16mg/ml)100μl、PAPAIN150μl、DNase(50mg/ml)100μlの混合液を用いて個々の細胞に分離した。その後、セルソーター(BD FACSAriaTMII)を用いてGFP陽性細胞(腫瘍細胞)のみ選別し、回収した。 On the 20th, 60th, 90th, and 120th days after birth, the cerebrum of the glioma-forming mouse model was removed. Earle's 10 × BSS 1 ml, EDTA (0.5 M) 10 μl, HEPES 100 μl, NaHCO 3 (1.0 M) 260 μl, D (+) glucose (× 20) 500 μl, L-cysteine (16 mg / ml) ml) 100 μl, PAPAIN 150 μl, DNase (50 mg / ml) 100 μl was used to separate individual cells. Thereafter, only GFP positive cells (tumor cells) were selected and collected using a cell sorter (BD FACSAria II).
 Trizol(Ambion by lifetechnology Catalog#15596018)を用いて、回収した腫瘍細胞からRNAを抽出し、さらにPrimeScript RT Master Mix(TaKaRa社(京都、日本国);製品コードRR036A)を用い、添付プロトコールに従って、cDNAを作製した。 RNA was extracted from the collected tumor cells using Trizol (Ambion by lifetechnology Catalog # 15596018), and then PrimeScript RT Master Mix (TaKaRa (Kyoto, Japan); product code RR036A), using the attached protocol, protocol RR036A) Was made.
 以下のプライマーを使用するRT-PCR(StepOnePlusTM、 Applied Biosystems社)を行い、Gapdh遺伝子とC130071C03Rik遺伝子の発現量を計測した。
 Gapdhプライマー配列:
Gapdh-Forward  CGTCCCGTAGACAAAATGGT(配列番号1)
Gapdh-Reverse  GAATTTGCCGTGAGTGGAGT(配列番号2)
 C130071C03Rikプライマー配列:
C130071C03Rik-Forward  TGACACTTCAAAGAAGCATAAAATG(配列番号3)
C130071C03Rik-Reverse  TGTGAATGTTTTAAGGGAGATCCT(配列番号4)
RT-PCR (StepOnePlus , Applied Biosystems) using the following primers was performed to measure the expression levels of the Gapdh gene and the C130071C03Rik gene.
Gapdh primer sequence:
Gapdh-Forward CGTCCCGTAGACAAAATGGT (SEQ ID NO: 1)
Gapdh-Reverse GAATTTGCCGTGAGTGGAGT (SEQ ID NO: 2)
C130071C03Rik primer sequence:
C130071C03Rik-Forward TGACACTTCAAAGAAGCATAAAATG (SEQ ID NO: 3)
C130071C03Rik-Reverse TGTGAATGTTTTAAGGGAGATCCT (SEQ ID NO: 4)
 p53, Nf1に遺伝子変異のない野生型のマウスでは大脳を摘出後、RNeasy Mini Kit(QIAGEN社;Cat No./ID:74104)を用いて添付プロトコールに従ってRNAを抽出した。 In wild-type mice with no gene mutation in p53 and Nf1, after extracting the cerebrum, RNA was extracted using RNeasy Mini Kit (QIAGEN; Cat No./ID: 74104) according to the attached protocol.
 Gapdh遺伝子を内部標準とし、qRT-PCR(Applied Biosystems社)を用いて経時的なC130071C03Rikの発現量を計測した結果、C130071C03Rikは発がん早期より発現が上昇しており、特に腫瘍形成期(生後90日)には正常の10倍以上の発現上昇が認められた(図1)。 As a result of measuring the expression level of C130071C03Rik over time using qRT-PCR (Applied Biosystems) with the Gapdh gene as an internal standard, the expression of C130071C03Rik increased from the early stage of carcinogenesis. ) Was observed to increase expression 10 times or more than normal (FIG. 1).
[実施例2]
<ヒト膠芽腫患者大脳におけるLINC00461発現量の解析>
 TCGA(The Cancer Genome Atlas)データベースから膠芽腫151例と正常大脳4例におけるLINC00461のデータを入手し、LINC00461の発現について解析した。
[Example 2]
<Analysis of LINC00461 expression level in human glioblastoma patient cerebrum>
The data of LINC00461 in 151 cases of glioblastoma and 4 cases of normal cerebrum were obtained from the TCGA (The Cancer Genome Atlas) database, and the expression of LINC00461 was analyzed.
 その結果、ヒト膠芽腫検体においてもLINC00461が高発現していることを確認した(図2)。また、LINC00461は膠芽腫形成に関わる可能性が推定された。 As a result, it was confirmed that LINC00461 was also highly expressed in human glioblastoma samples (FIG. 2). In addition, it was estimated that LINC00461 may be involved in glioblastoma formation.
[実施例3]
<LINC00461の発現を抑制するsiRNA>
 本発明者らは、LINC00461の発現を抑制するsiRNAを3種類作製した。siRNAの作製にはsiDirect version 2.0 (http://sidirect2.rnai.jp/)を用いた。LINC00461のRNA配列(RefSeq NR_024384)に対する標的配列の検索を行い、3種類のsiRNA(si-LINC00461 #1~#10;北海道システムサイエンス社(札幌、日本国)に委託)を作製した。siRNAの配列を表1に示す。すべてのsiRNAについて3'末端の2塩基をDNAとして合成した。
Figure JPOXMLDOC01-appb-T000001
[Example 3]
<SiRNA that suppresses the expression of LINC00461>
The present inventors produced three types of siRNA that suppress the expression of LINC00461. For siRNA production, siDirect version 2.0 (http://sidirect2.rnai.jp/) was used. A target sequence was searched for the LINC00461 RNA sequence (RefSeq NR — 024384) to prepare three types of siRNA (si-LINC00461 # 1 to # 10; consigned to Hokkaido System Science Co., Ltd. (Sapporo, Japan)). The sequence of siRNA is shown in Table 1. For all siRNAs, 2 bases at the 3 ′ end were synthesized as DNA.
Figure JPOXMLDOC01-appb-T000001
 Lipofectamine 3000(ライフテクノロジーズ社)を用いて添付プロトコールに従い、各siRNA(終濃度50nM)を膠芽腫細胞株(U87、U251、各初期細胞数5×10)へ導入した。コントロールsiRNAはSilencer Select Negative Control #1 siRNA(ライフテクノロジーズ社;カタログ番号4390843)を用いた。siRNA導入48時間後にGAPDH遺伝子を内部標準とし、コントロールsiRNAに対するLINC00461の発現量をqRT-PCRにて定量し、3種類のsiRNAのLINC00461に対する発現抑制効果を確認した(図3)。 Each siRNA (final concentration 50 nM) was introduced into a glioblastoma cell line (U87, U251, each initial cell number 5 × 10 4 ) using Lipofectamine 3000 (Life Technologies) according to the attached protocol. Silencer Select Negative Control # 1 siRNA (Life Technologies; catalog number 4390843) was used as the control siRNA. 48 hours after siRNA introduction, the expression level of LINC00461 relative to control siRNA was quantified by qRT-PCR using the GAPDH gene as an internal standard, and the effect of suppressing the expression of three types of siRNA against LINC00461 was confirmed (FIG. 3).
 Human GAPD (GAPDH) Endogenous Controlプライマー(カタログ番号4352934E)はApplied Biosystemsより購入し、また、LINC00461の発現量を定量するためのプライマーとして以下のものを使用した。
 プライマー配列:
LINC00461-Forward  CGTGCTGTGACTTTGGATCT(配列番号35)
LINC00461-Reverse  TGCTTCTTTGCAGTCTCATTTG(配列番号36)
Human GAPD (GAPDH) Endogenous Control primer (catalog number 4352934E) was purchased from Applied Biosystems, and the following were used as primers for quantifying the expression level of LINC00461.
Primer sequence:
LINC00461-Forward CGTGCTGTGACTTTGGATCT (SEQ ID NO: 35)
LINC00461-Reverse TGCTTCTTTGCAGTCTCATTTG (SEQ ID NO: 36)
[実施例4]
<U87およびU251に対するsiRNAによる抗増殖効果の評価>
 96ウエルプレート上の膠芽腫細胞株(U87、U251;各初期細胞数5×10)にsiRNA(終濃度50nM)を導入した。導入後、24、48、72時間後にそれぞれcell counting kit-8(同仁化学研究所(熊本、日本国);製品コードCK04)を各ウェルに10μlずつ添加し、2時間後にマイクロプレートリーダー(versaMAX)で450nmの吸光度を測定した。
[Example 4]
<Evaluation of antiproliferative effect by siRNA against U87 and U251>
SiRNA (final concentration 50 nM) was introduced into a glioblastoma cell line (U87, U251; initial cell number 5 × 10 3 ) on a 96-well plate. 24, 48, and 72 hours after introduction, 10 μl of cell counting kit-8 (Dojindo Laboratories (Kumamoto, Japan); product code CK04) was added to each well, and 2 hours later, a microplate reader (versaMAX) The absorbance at 450 nm was measured.
 その結果、膠芽腫細胞内のLINC00461の発現抑制によって有意に膠芽腫細胞の増殖が悪化することが確認された(図4)。 As a result, it was confirmed that the proliferation of glioblastoma cells was significantly deteriorated by suppressing the expression of LINC00461 in the glioblastoma cells (FIG. 4).
[実施例5]
<脳腫瘍同所移植マウスモデルに対するLINC00461-LNAオリゴマーを含むドラッグデリバリー製剤による抗腫瘍効果>
 脳腫瘍同所移植マウスモデルとして免疫不全マウス(BLAB/c slc-nu/nu;日本エスエルシー株式会社(静岡、日本国))の脳に膠芽腫細胞株U87を同所移植し、移植14日後の脳腫瘍が生着したマウスを作製した。
[Example 5]
<Anti-tumor effect of drug delivery formulation containing LINC00461-LNA oligomer for brain tumor orthotopic transplantation mouse model>
The glioblastoma cell line U87 was orthotopically transplanted into the brain of an immunodeficient mouse (BLAB / c slc-nu / nu; Nippon SLC Co., Ltd. (Shizuoka, Japan)) as a brain tumor orthotopic mouse model, and 14 days after transplantation Mice with engrafted brain tumors were prepared.
 マウス個体レベルで脳へのLINC00461-LNAオリゴマーの集積を確認するため、ドラッグデリバリー材料(ナノサイズのポリマーミセルタイプ(ポリエチレングリコール-ポリアミノ酸ブロックコポリマー);K. Osada et al., J. R. Soc. Interface (2009) 6, S325-S339; Miura, Y. et al. Cyclic RGD-linked polymeric micelles for targeted delivery of platinum anticancer drugs to glioblastoma through the blood-brain tumor barrier. ACS nano 7, 8583-8592 (2013))に内包するLINC00461-LNAオリゴマー(5'側のAGTおよび3'側のCTTがロックド核酸であるアンチセンスDNA;5’-AGTTTATTCCGAACTTTTCTT-3’(配列番号39))を蛍光物質(Alexa-647)で標識した。なお比較解析としてAlexa-647標識したLINC00461-LNAオリゴマー単体を用いた。 In order to confirm the accumulation of LINC00461-LNA oligomers in the brain at the individual mouse level, drug delivery materials (nano-sized polymer micelle type (polyethylene glycol-polyamino acid block copolymer); K. Osada et al., J.R. Soc. . Interface (2009) 6, S325-S339;.. Miura, Y. et al Cyclic RGD-linked polymeric micelles for targeted delivery of platinum anticancer drugs to glioblastoma through the blood-brain tumor barrier ACS nano 7, 8583- 592 (2013)), a LINC00461-LNA oligomer (antisense DNA in which 5'-side AGT and 3'-side CTT are locked nucleic acids; 5'-AGTTTATTCCGAACTTTTCTT-3 '(SEQ ID NO: 39)) is a fluorescent substance ( Labeled with Alexa-647). As a comparative analysis, a single LINC00461-LNA oligomer labeled with Alexa-647 was used.
 LINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤及びLINC00461-LNAオリゴマー単体を脳腫瘍同所移植マウス(25μg/マウス)に静脈内投与後、蛍光強度をIVIS Imaging System(Caliper LifeSciences)によって測定した結果、 LINC00461-LNAオリゴマーを内包したドラッグデリバリー製剤が脳腫瘍部に特異的に集積していることを確認した(図5)。 LINC00461-LNA oligomer-encapsulated drug delivery formulation and LINC00461-LNA oligomer alone were intravenously administered to brain tumor orthotopic transplanted mice (25 μg / mouse), and the fluorescence intensity was measured by IVIS Imaging System (Caliper LifeSciences). It was confirmed that the drug delivery preparation encapsulating the LNA oligomer was specifically accumulated in the brain tumor site (FIG. 5).
 次に、上記脳腫瘍同所移植マウス(膠芽腫細胞株U87を移植14日後のマウス)に対して、LINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤を継続的に静脈内投与し(3日ごとに一度投与(25μg/マウス))、抗腫瘍効果を評価した。なお比較解析としてFirefly GL3 Luciferase遺伝子に対するLNAオリゴマー(5'側のTCGおよび3'側のGTTがロックド核酸であるアンチセンスDNA;5’-TCGAAGTACTCAGCGTAAGTT-3’(配列番号40))を内包したドラッグデリバリー製剤を投与したマウスを用いた。投与開始から15日後(この間に合計5回の投与を行った。)にマウス脳を摘出し、脳組織をヘマトキシリン・エオジン(HE)染色によって観察した結果、LINC00461-LNAオリゴマーを内包したドラッグデリバリー製剤の投与により腫瘍の著しい縮小を認めた(図6)。また、マウス脳腫瘍組織よりRNAを抽出し、qRT-PCRにてLINC00461の発現量を定量し、LINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤に対する発現抑制効果を確認した(図7)。 Next, a drug delivery formulation containing a LINC00461-LNA oligomer is continuously administered intravenously (every 3 days) to the above brain tumor orthotopic transplanted mice (mice 14 days after transplantation of glioblastoma cell line U87). Once administered (25 μg / mouse)), antitumor effects were evaluated. For comparative analysis, drug delivery containing LNA oligomers for Firefly GL3 Luciferase gene (5′-TCGAAGTACTCAGCGTAAGTT-3 ′ (SEQ ID NO: 40)), which is an antisense DNA in which 5 ′ TCG and 3 ′ GTT are locked nucleic acids. Mice to which the formulation was administered were used. 15 days after the start of administration (a total of 5 administrations were performed during this period), the mouse brain was removed, and the brain tissue was observed by hematoxylin-eosin (HE) staining. As a result, a drug delivery formulation containing LINC00461-LNA oligomer The tumor was markedly reduced by administration of (Fig. 6). In addition, RNA was extracted from mouse brain tumor tissue, and the expression level of LINC00461 was quantified by qRT-PCR, confirming the expression-suppressing effect on the drug delivery formulation containing the LINC00461-LNA oligomer (FIG. 7).
 以上の結果より、LINC00461-LNAオリゴマーを内包するドラッグデリバリー製剤は、in vivoで脳腫瘍に特異的に集積し、強い抗腫瘍作用を示すことが明らかになった。 From the above results, it was revealed that the drug delivery preparation encapsulating the LINC00461-LNA oligomer specifically accumulates in the brain tumor in vivo and exhibits a strong antitumor action.
 本発明により、siRNAを用いて腫瘍細胞内のLINC00461の発現を抑制することによって膠芽腫等の腫瘍の増殖抑制効果が認められたことから、LINC00461を標的とする核酸創薬が膠芽腫等の腫瘍の治療または予防のために有用である。 According to the present invention, an inhibitory effect on the growth of tumors such as glioblastoma was observed by suppressing the expression of LINC00461 in tumor cells using siRNA. Useful for the treatment or prevention of tumors.
配列番号1~4:プライマー
配列番号5~24:ヒトLINC00461のsiRNA
配列番号35~36:プライマー
配列番号39:LINC00461-LNAオリゴマー
配列番号40:Firefly GL3 Luciferase遺伝子に対するLNAオリゴマー
SEQ ID NOs: 1-4: primer SEQ ID NOs: 5-24: siRNA of human LINC00461
SEQ ID NO: 35-36: Primer SEQ ID NO: 39: LINC00461-LNA oligomer SEQ ID NO: 40: LNA oligomer for Firefly GL3 Luciferase gene
 本明細書で引用した全ての刊行物、特許及び特許出願はそのまま引用により本明細書に組み入れられるものとする。 All publications, patents and patent applications cited in this specification are incorporated herein by reference in their entirety.

Claims (12)

  1.  LINC00461遺伝子の発現を抑制する核酸を有効性成分として含むことを特徴とする、該遺伝子を発現する腫瘍を有する被験体を治療または予防するための医薬組成物。 A pharmaceutical composition for treating or preventing a subject having a tumor that expresses the gene, comprising a nucleic acid that suppresses the expression of the LINC00461 gene as an active ingredient.
  2.  前記核酸が、LINC00461遺伝子の転写体RNAに対する、siRNA、その前駆体RNA、アンチセンスRNA、もしくはその修飾RNA、またはアンチセンスDNA、あるいは、該siRNAもしくはその前駆体RNAをコードするDNAまたは該アンチセンスDNAを含むベクターであることを特徴とする、請求項1に記載の医薬組成物。 The nucleic acid is siRNA, its precursor RNA, antisense RNA, or its modified RNA, or antisense DNA, or the DNA encoding the siRNA or its precursor RNA or the antisense to the transcript RNA of the LINC00461 gene The pharmaceutical composition according to claim 1, which is a vector containing DNA.
  3.  前記核酸が、配列番号37の前記転写体RNA配列の1位と150位の間の塩基配列、700位と1620位の間の塩基配列、または3050位と3560位の間の塩基配列を標的とすることを特徴とする、請求項1または2に記載の医薬組成物。 The nucleic acid targets a base sequence between positions 1 and 150, a base sequence between positions 700 and 1620, or a base sequence between positions 3050 and 3560 of the transcript RNA sequence of SEQ ID NO: 37 The pharmaceutical composition according to claim 1 or 2, wherein
  4.  前記核酸が標的とする塩基配列が、配列番号25~34からなる群から選択されることを特徴とする、請求項3に記載の医薬組成物。 The pharmaceutical composition according to claim 3, wherein the base sequence targeted by the nucleic acid is selected from the group consisting of SEQ ID NOs: 25 to 34.
  5.  前記核酸が、下記のsiRNAまたはその修飾RNA:
     (a)配列番号5のアンチセンス鎖配列と配列番号6のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (b)配列番号7のアンチセンス鎖配列と配列番号8のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (c)配列番号9のアンチセンス鎖配列と配列番号10のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (d)配列番号11のアンチセンス鎖配列と配列番号12のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (e)配列番号13のアンチセンス鎖配列と配列番号14のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (f)配列番号15のアンチセンス鎖配列と配列番号16のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (g)配列番号17のアンチセンス鎖配列と配列番号18のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (h)配列番号19のアンチセンス鎖配列と配列番号20のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (i)配列番号21のアンチセンス鎖配列と配列番号22のセンス鎖配列からなるsiRNAまたはその修飾RNA、ならびに、
     (j)配列番号23のアンチセンス鎖配列と配列番号24のセンス鎖配列からなるsiRNAまたはその修飾RNA、
    からなる群から選択される1つのsiRNAまたはその修飾RNAあるいは2つ以上のsiRNAおよび/またはその修飾RNAの組み合わせであることを特徴とする、請求項1~4のいずれか1項に記載の医薬組成物。
    The nucleic acid is the following siRNA or a modified RNA thereof:
    (A) siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof,
    (B) siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof,
    (C) siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof,
    (D) siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof,
    (E) siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof,
    (F) siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modified RNA thereof,
    (G) siRNA comprising the antisense strand sequence of SEQ ID NO: 17 and the sense strand sequence of SEQ ID NO: 18 or a modified RNA thereof,
    (H) siRNA comprising the antisense strand sequence of SEQ ID NO: 19 and the sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof,
    (I) siRNA comprising the antisense strand sequence of SEQ ID NO: 21 and the sense strand sequence of SEQ ID NO: 22 or a modified RNA thereof, and
    (J) siRNA comprising the antisense strand sequence of SEQ ID NO: 23 and the sense strand sequence of SEQ ID NO: 24 or a modified RNA thereof,
    The pharmaceutical according to any one of claims 1 to 4, which is one siRNA selected from the group consisting of the above, or a modified RNA thereof, or a combination of two or more siRNA and / or a modified RNA thereof. Composition.
  6.  前記修飾RNAが、2'-O、4'-Cメチレンブリッジを有するロックされたLNA修飾ヌクレオチド、2'-メトキシヌクレオチド、2'-メトキシエトキシヌクレオチド、あるいはそれらの組み合わせからなる、少なくとも2つの修飾ヌクレオチドを含むことを特徴とする、請求項2~5のいずれか1項に記載の医薬組成物。 At least two modified nucleotides, wherein the modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or combinations thereof The pharmaceutical composition according to any one of claims 2 to 5, characterized by comprising
  7.  前記腫瘍が、脳腫瘍、乳癌、大腸癌、前立腺癌、肝臓癌、肺癌、白血病、子宮頸癌およびリンパ腫からなる群から選択されることを特徴とする、請求項1~6のいずれか1項に記載の医薬組成物。 The tumor according to any one of claims 1 to 6, characterized in that the tumor is selected from the group consisting of brain tumor, breast cancer, colon cancer, prostate cancer, liver cancer, lung cancer, leukemia, cervical cancer and lymphoma. The pharmaceutical composition as described.
  8.  前記脳腫瘍が、膠芽腫であることを特徴とする、請求項7に記載の医薬組成物。 The pharmaceutical composition according to claim 7, wherein the brain tumor is glioblastoma.
  9.  前記腫瘍が早期癌であることを特徴とする、請求項1~8のいずれか1項に記載の医薬組成物。 The pharmaceutical composition according to any one of claims 1 to 8, wherein the tumor is an early cancer.
  10.  前記核酸が、ドラッグデリバリー材料に含まれることを特徴とする、請求項1~9のいずれか1項に記載の医薬組成物。 The pharmaceutical composition according to any one of claims 1 to 9, wherein the nucleic acid is contained in a drug delivery material.
  11.  下記の核酸:
     (a)配列番号5のアンチセンス鎖配列と配列番号6のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (b)配列番号7のアンチセンス鎖配列と配列番号8のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (c)配列番号9のアンチセンス鎖配列と配列番号10のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (d)配列番号11のアンチセンス鎖配列と配列番号12のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (e)配列番号13のアンチセンス鎖配列と配列番号14のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (f)配列番号15のアンチセンス鎖配列と配列番号16のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (g)配列番号17のアンチセンス鎖配列と配列番号18のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (h)配列番号19のアンチセンス鎖配列と配列番号20のセンス鎖配列からなるsiRNAまたはその修飾RNA、
     (i)配列番号21のアンチセンス鎖配列と配列番号22のセンス鎖配列からなるsiRNAまたはその修飾RNA、ならびに、
     (j)配列番号23のアンチセンス鎖配列と配列番号24のセンス鎖配列からなるsiRNAまたはその修飾RNA、
    からなる群から選択される抗腫瘍性核酸。
    The following nucleic acids:
    (A) siRNA comprising the antisense strand sequence of SEQ ID NO: 5 and the sense strand sequence of SEQ ID NO: 6 or a modified RNA thereof,
    (B) siRNA comprising the antisense strand sequence of SEQ ID NO: 7 and the sense strand sequence of SEQ ID NO: 8 or a modified RNA thereof,
    (C) siRNA comprising the antisense strand sequence of SEQ ID NO: 9 and the sense strand sequence of SEQ ID NO: 10 or a modified RNA thereof,
    (D) siRNA consisting of the antisense strand sequence of SEQ ID NO: 11 and the sense strand sequence of SEQ ID NO: 12 or a modified RNA thereof,
    (E) siRNA comprising the antisense strand sequence of SEQ ID NO: 13 and the sense strand sequence of SEQ ID NO: 14 or a modified RNA thereof,
    (F) siRNA comprising the antisense strand sequence of SEQ ID NO: 15 and the sense strand sequence of SEQ ID NO: 16 or a modified RNA thereof,
    (G) siRNA comprising the antisense strand sequence of SEQ ID NO: 17 and the sense strand sequence of SEQ ID NO: 18 or a modified RNA thereof,
    (H) siRNA comprising the antisense strand sequence of SEQ ID NO: 19 and the sense strand sequence of SEQ ID NO: 20 or a modified RNA thereof,
    (I) siRNA comprising the antisense strand sequence of SEQ ID NO: 21 and the sense strand sequence of SEQ ID NO: 22 or a modified RNA thereof, and
    (J) siRNA comprising the antisense strand sequence of SEQ ID NO: 23 and the sense strand sequence of SEQ ID NO: 24 or a modified RNA thereof,
    An antitumor nucleic acid selected from the group consisting of:
  12.  前記修飾RNAが、2'-O、4'-Cメチレンブリッジを有するロックされたLNA修飾ヌクレオチド、2'-メトキシヌクレオチド、2'-メトキシエトキシヌクレオチド、あるいはそれらの組み合わせからなる、少なくとも2つの修飾ヌクレオチドを含むことを特徴とする、請求項11に記載の抗腫瘍性核酸。 At least two modified nucleotides, wherein the modified RNA consists of a locked LNA modified nucleotide having a 2′-O, 4′-C methylene bridge, 2′-methoxy nucleotide, 2′-methoxyethoxy nucleotide, or combinations thereof The antitumor nucleic acid according to claim 11, comprising:
PCT/JP2017/024223 2016-06-30 2017-06-30 Nucleic acid and composition for treating tumors, including brain tumors WO2018003988A1 (en)

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Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
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HAN,L. ET AL.: "IncRNA profile of glioblastoma reveals the potential role of lncRNAs in contributing to glioblastoma pathogenesis.", INT. J. ONCOL., vol. 40, no. 6, June 2012 (2012-06-01), pages 2004 - 2012, XP055449136, ISSN: 1791-2423 *
OLIVER,P.L. ET AL.: "Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype.", CEREB. CORTEX., vol. 25, no. 10, October 2015 (2015-10-01), pages 3572 - 3585, XP055449137, ISSN: 1460-2199 *
PASTORI,C. ET AL.: "The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation.", PROC. NATL. ACAD. SCI. USA, vol. 112, no. 27, 7 July 2015 (2015-07-07), pages 8326 - 8331, XP055449133, ISSN: 1091-6490 *
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