WO2017114005A1 - Terc gene and/or myc gene detection probe, preparation method therefor, and reagent kit - Google Patents

Terc gene and/or myc gene detection probe, preparation method therefor, and reagent kit Download PDF

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WO2017114005A1
WO2017114005A1 PCT/CN2016/105711 CN2016105711W WO2017114005A1 WO 2017114005 A1 WO2017114005 A1 WO 2017114005A1 CN 2016105711 W CN2016105711 W CN 2016105711W WO 2017114005 A1 WO2017114005 A1 WO 2017114005A1
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gene
terc
myc
ctd
probe
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何瑰
陈绍宇
席影
张会清
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广州安必平医药科技股份有限公司
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    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12Q1/6841In situ hybridisation

Definitions

  • the present invention belongs to the field of biotechnology, and particularly relates to a TERC (ERBB2) gene and/or MYC gene detecting probe, a preparation method thereof and a kit.
  • TERC ERBB2
  • MYC MYC gene detecting probe
  • Cervical cancer is a common malignant tumor in gynecology. From normal cervix, cervical intraepithelial neoplasia to cervical cancer is a gradual development process, its occurrence and development are closely related to the abnormal expression or deletion of various genes and proteins, which is a complex multi-step process. During the treatment of cervical cancer, the therapeutic effect on cervical cancer is related to the pathological grade. CIN and early cervical cancer (including carcinoma in situ and early invasive carcinoma) have very good therapeutic effects, and the treatment measures are appropriate. survive. Therefore, early diagnosis and accurate grading of cervical cancer is very important in the prevention and treatment of cervical cancer. Human telomerase RNA component (TERC) is a major component of human telomerase.
  • TTC Human telomerase RNA component
  • the protooncogene MYC v-myc avian myelocytomatosis viral oncogene homolog, MYC
  • MYC v-myc avian myelocytomatosis viral oncogene homolog
  • Fluorescence in situ hybridization is a non-radioactive in situ hybridization technique developed on the basis of the original radioactive in situ hybridization technique in the late 1980s. At present, this technology has been widely used in animal and plant genomic structure research, chromosome fine structure variation analysis, viral infection analysis, human prenatal diagnosis, tumor genetics and genome evolution research in many fields.
  • the basic principle of FISH is to use a known labeled nucleic acid as a probe to heterologously bind to an unknown single-stranded nucleic acid in a material to be tested according to the principle of base complementation to form a hybrid double-stranded nucleic acid which can be detected.
  • the probe can be directly hybridized to the chromosome to localize the specific gene on the chromosome.
  • fluorescence in situ hybridization has the characteristics of rapid detection signal, high hybridization specificity and multi-staining, so it has received widespread attention in the field of molecular cytogenetics.
  • the probes used for hybridization can be roughly classified into three categories: 1) chromosome-specific repeat probes, such as alpha satellites, satellite class III probes, which often have a hybrid target of more than 1 Mb, do not contain scattered repeats, and bind tightly to the target. Hybrid letter Strong, easy to detect; 2) Whole-chromosomal or chromosomal region-specific probes consisting of extremely different nucleotide segments on a chromosome or a segment of a chromosome, which can be cloned into phage and plasmid-specific chromosomes Large fragment acquisition; 3) specific position probe consisting of one or several cloned sequences.
  • the fluorescein labeling of the probe can be performed by direct and indirect labeling.
  • the indirect labeling is a biotin-labeled DNA probe, which is detected by fluorescein avidin or streptavidin after hybridization, and the avidin-biotin-fluorescein complex can also be used to fluoresce signals. Amplification is performed so that a fragment of about 500 bp can be detected.
  • the direct labeling method is to directly bind fluorescein to the probe nucleotide or the pentose phosphate backbone, or to incorporate fluorescein nucleoside triphosphate in the nick translation labeling probe.
  • the direct labeling method has simple steps in detection and is convenient for clinical use.
  • One of the objects of the present invention is to provide a TERC gene and/or MYC gene detecting probe and a preparation method thereof, which can be used for detecting the state of the TERC gene and the MYC gene, that is, detecting a copy of the TERC gene and the MYC gene.
  • the number changes and has good specificity.
  • a method for preparing a TERC gene and/or a MYC gene detection probe comprising the steps of:
  • a BAC clone for the TERC gene as at least one of CTD-3214J12, RP11-816J6, and RP11-778I3, or selecting a BAC clone as at least one of RP11-3K16, CTD-2582E13, and RP11-886J24; / or select the BAC clone for the MYC gene as CTD-2511O8, or select the BAC clone as at least one of RP11-440N18 and CTD-2205H22;
  • the plasmid DNA is labeled with fluorescein, and the fluorescein labeled with the plasmid DNA of the same gene is the same, and the color of the fluoresin labeled with the TERC gene and the detection probe for the MYC gene is different.
  • the BAC clones for the TERC gene are CTD-3214J12, RP11-816J6, and RP11-778I3.
  • the BAC clones for the TERC gene are RP11-3K16, CTD-2582E13, and RP11-886J24.
  • the BAC clone for the MYC gene is CTD-2511O8.
  • the BAC clones directed against the MYC gene are RP11-440N18 and CTD-2205H22.
  • the labeled fluorescein selects a fluorescent dye known in the art, preferably fluorescein is Alexa FITC, Alexa Rhodamine, Texas Red, pacific DEAC.
  • the labeling of the gene probe can be performed by labeling the corresponding fluorescein to the double-stranded nucleic acid by methods in the prior art, including but not limited to: random primer method, nick translation, etc., marker gene probe
  • the needle can be a commercially available nick translation labeling kit and/or a random primer labeling kit, preferably abbott and/or Roche's Nick Translation Kit.
  • the plasmid DNA is preferably subjected to fluorescein labeling by a random primer method or a nick translation method.
  • the label has a temperature of from 14 ° C to 18 ° C and a labeling time of from 10 to 14 hours.
  • Another object of the present invention is to provide a TERC gene and MYC gene detecting kit.
  • a TERC gene and/or MYC gene detection kit comprising the above TERC gene and/or MYC gene detection probe.
  • a chromosome 7 discrimination probe (CSP 7) probe for internal control is included, the identification probe being different in color from the fluorescein labeled by the TERC gene and the MYC gene detection probe.
  • CSP 7 chromosome 7 discrimination probe
  • the present invention detects the TERC/MYC gene amplification by FISH (Fluorescence In-Situ Hybridization) by screening the optimal MYC gene amplification detection probe and its combination, and the signal counting is accurate and rapid, and The reproducibility of the results is good; supplementing the shortage of detection reagents in the clinic depends on the import, which is beneficial to the subsequent application of the detection probe in clinical research, early diagnosis, grading diagnosis and guiding treatment of cervical cancer.
  • FISH Fluorescence In-Situ Hybridization
  • the cloning detection specificity of the present invention is good, and the TERC/MYC gene amplification detection kit according to the present invention understands the state change of the MYC gene from the gene level, and changes the abnormal signal pattern and the number of abnormal signal cells. Judging pathological grades is diagnostic in cytological height and low-grade lesions.
  • Fig. 1A is a schematic diagram showing the TERC gene detecting probe sequence of Example 1.
  • Figure 1B is a schematic illustration of the MYC gene detection probe sequence of Example 1.
  • FIG. 2 is a FISH detection result of a human peripheral blood culture cell sheet TERC gene and a MYC gene detection probe in Example 1.
  • Example 3 is a FISH detection result of a cervical exfoliated cell sample in Example 4, wherein the detection signal type is 2R2G2A, and the detection signal type is 2R2G2A, and the detection result is: the TERC gene is not amplified, and the MYC gene is not expanded. increase.
  • Example 4 is a FISH detection result of the cervical tissue sample in Example 4, wherein the detection signal type is 2R2G2A, and the detection result is that the TERC gene is not amplified, and the MYC gene is not amplified.
  • Fig. 5 is a graph showing the results of FISH detection of cervical tissue samples in Example 4, wherein the detection signal type is 3R3G2A, and the detection results are: TERC gene amplification, MYC gene amplification.
  • a clone comprising the TERC of the gene of interest and the sequences at both ends was selected, as shown in Fig. 1A.
  • the GSP TERC comprises two sets of probes, the first set of probes comprising a first probe, a second probe and a third probe, as shown in the following table, purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
  • the second set of probes included a fourth probe, a fifth probe, and a sixth probe, as specifically listed below, which were purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
  • Second probe RP11-816J6 (chr3: 169447253..169494853) 48Kb
  • Third probe RP11-778I3 (chr3:169492904..169717073)224Kb
  • the GSP MYC includes two sets of probes:
  • the first set of probes included the first probe, as shown in the table below, which was purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
  • the second set of probes included a second probe and a third probe, as detailed below, which were purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
  • the labeled product was subjected to ethanol precipitation and concentration, and sodium acetate and absolute ethanol were sequentially added to a 1.5 ml centrifuge tube in the following manner, and protected from light and ice:
  • the red signal shows GSP TERC
  • the green signal shows GSP MYC
  • the cyan signal CSP 7 Chrosome 7 probe, purchased from D7Z1SpectrumAqua Probe, article number: 06J54-007. It can be seen that the TERC/MYC/7 chromosome probe signal is bright, and sensitivity and specificity can be observed on the metaphase chromosome in human peripheral blood cultured cell sheets. 100% sex; using a paraffin sample for hybridization detection, three target copy numbers can be clearly recorded. The results of other corresponding probe verification experiments are the same as those of the TERC group one probe + MYC group one probe, and the figures are omitted.
  • the TERC gene and MYC gene detection kit includes two components of a TERC/MYC hybridization solution and a DAPI counterstain, wherein the TERC and MYC hybridization solution comprises the set of GSP MYC gene probes described in Example 1 and a set of GSP TERCs. A combination of gene probes.
  • the TERC and MYC genes have two sets of detection probes respectively, and the two groups of the two genes can be combined at will.
  • the TERC gene and the MYC gene detection kit are four, respectively: TERC (group one) + Combination of MYC (Group 1), combination of TERC (Group 2) + MYC (Group 2), combination of TERC (Group 1) + MYC (Group 2), TERC (Group 2) + MYC (Group 1), CSP7 (Chromosome 7 probe, available from D7Z1 Spectrum Aqua Probe, Cat. No. 06J54-007), buffer component for hybridization environment (promoting hybridization), COT Human DNA with closed repeats, etc.).
  • DAPI counterstaining agent is mainly used for counterstaining of cells after hybridization, in which DAPI binds to DNA, so that the nucleus shows blue fluorescence, and the counterstaining agent containing p-phenylenediamine can maintain fluorescence stability.
  • Example 3 Detection method of TERC gene and MYC gene detection kit
  • the relevant fluorescence and DAPI need to be observed with a suitable filter block.
  • Each negative control panel randomly counts the complete 100 cells, counts the number and percentage of abnormal signal cells in each sample, the average and standard deviation of the statistical percentage, and the negative threshold is set to the mean + 3 standard deviation .
  • Example 4 Clinical evaluation of TERC gene and MYC gene detection kit
  • Example 1 Using the TERC gene and MYC gene detection probe combination described in Example 1, the four detection kits described in Example 2 (TERC (Group 1) + MYC (Group 1) combination, TERC (Group 2) + MYC (Group) 2) combination, TERC (group 1) + MYC (group 2) combination, TERC (group 2) + MYC (group 1) combination) for 20 clinical samples (sample type is formalin fixed paraffin embedded) Tissue samples and cervical exfoliated cell samples were diagnosed by pathological examination, as shown in the table below, and tested separately. The detection of the two probe combinations is consistent. Compared with commercially available commercial reagents, the test results are completely consistent, and the specificity and sensitivity of the reagents are high.
  • Figure 3 and Figure 4 and Figure 5 show the combined kit detection results of TERC (Group 1) + MYC (Group 1).
  • the detection signal type is 2R2G2A, and TERC/MYC is not amplified;
  • the detection signal type is 3R3G2A, and the TERC/MYC gene is amplified.
  • the detection results of the combinations of the other three different gene probes are the same, and the figures are omitted.
  • the detection of the TERC gene and the MYC gene by using one probe can also achieve the corresponding detection, but the use of the combined probe can be better than the combination of the probes, especially in the present embodiment.
  • the signal of TERC (group 1) + MYC (group 1) and TERC (group 2) + MYC (group 2) combination detection is the best. Theoretically, the longer the length of the probe, the brighter the fluorescence signal obtained during actual detection, but because more gene sequences may be involved, the complexity of the resulting signal is increased, and the difficulty of detection is also enhanced.
  • the BAC clones of the detection probes of Groups 1 and 2 for the TERC gene of the present invention have lengths of 564 Kb and 497 Kb, respectively, and are nucleic acid mixtures comprising the TERC gene and its both ends.
  • the total lengths of the BAC clones of the detection probes of Groups 1 and 2 for the MYC gene of the present invention are: 213 Kb and 291 Kb, respectively, which are nucleic acid mixtures comprising the MYC gene and its both ends.
  • the samples can be molecularly classified according to the detection results, and used for clinical treatment plan formulation, drug selection and efficacy judgment according to the significance of the detection indicators.

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Abstract

A TERC gene and MYC gene detection probe, and a preparation method therefor. The method comprises the following steps: selecting at least one of CTD-3214J12, RP11-816J6 and RP11-778I3 as a BAC clone for a TERC gene, or selecting at least one of RP11-3K16, CTD-2582E13 and RP11-886J24 as a BAC clone; and/or selecting CTD-2511O8 as a BAC clone for an MYC gene, or selecting at least one of RP11-440N18 and CTD-2205H22 as the BAC clone; obtaining a plasmid DNA; performing labeling. Also provided is a reagent kit comprising the TERC gene and MYC gene detection probe.

Description

TERC基因和/或MYC基因检测探针及其制备方法和试剂盒TERC gene and/or MYC gene detection probe and preparation method and kit thereof 技术领域Technical field
本发明属于生物技术,特别是涉及TERC(ERBB2)基因和/或MYC基因检测探针及其制备方法和试剂盒。The present invention belongs to the field of biotechnology, and particularly relates to a TERC (ERBB2) gene and/or MYC gene detecting probe, a preparation method thereof and a kit.
背景技术Background technique
宫颈癌是妇科常见的恶性肿瘤。从正常宫颈、宫颈上皮内瘤变到宫颈癌是一个逐渐发展的过程,其发生、发展与多种基因和蛋白质的异常表达或缺失密切相关,是一个复杂的多步骤过程。在子宫颈癌的治疗过程中发现,针对宫颈癌的治疗效果与病理分级相关,CIN及早期宫颈癌(包括原位癌和早期浸润癌)的治疗效果非常好,治疗措施得当,可长期无瘤生存。因此,宫颈癌的早期诊断和准确分级在宫颈癌的防治中非常重要。人类端粒酶RNA(telomerase RNA component,,TERC)是人类端粒酶的主要组成部份,TERC基因的突变、活化及扩增将导致端粒酶活性的增强。原癌基因MYC(v-myc avian myelocytomatosis viral oncogene homolog,MYC)是MYC家族的重要成员,编码细胞核内磷酸化蛋白质。MYC基因是细胞增殖的主要调节基因,其表达的增强可以启动细胞的非控制性增值过程,从而促使大多数人类肿瘤的发生。研究发现,与正常宫颈和低度宫颈癌前病变(CIN1)相比,TERC基因和MYC基因的扩增频率随着宫颈病变的进展而加强,提示检测TERC/MYC基因状态可以辅助临床区分高度与低度宫颈癌前病变,提高细胞学及HPV检测筛查宫颈病变的灵敏度及特异性。Cervical cancer is a common malignant tumor in gynecology. From normal cervix, cervical intraepithelial neoplasia to cervical cancer is a gradual development process, its occurrence and development are closely related to the abnormal expression or deletion of various genes and proteins, which is a complex multi-step process. During the treatment of cervical cancer, the therapeutic effect on cervical cancer is related to the pathological grade. CIN and early cervical cancer (including carcinoma in situ and early invasive carcinoma) have very good therapeutic effects, and the treatment measures are appropriate. survive. Therefore, early diagnosis and accurate grading of cervical cancer is very important in the prevention and treatment of cervical cancer. Human telomerase RNA component (TERC) is a major component of human telomerase. Mutation, activation and amplification of TERC gene will lead to enhanced telomerase activity. The protooncogene MYC (v-myc avian myelocytomatosis viral oncogene homolog, MYC) is an important member of the MYC family and encodes a phosphorylated protein in the nucleus. The MYC gene is a major regulatory gene of cell proliferation, and its enhanced expression can initiate a non-controlled proliferation process of cells, thereby promoting the occurrence of most human tumors. The study found that compared with normal cervical and low-grade cervical precancerous lesions (CIN1), the amplification frequency of TERC gene and MYC gene is enhanced with the progression of cervical lesions, suggesting that detection of TERC/MYC gene status can assist clinical differentiation. Low-grade cervical precancerous lesions improve the sensitivity and specificity of cytology and HPV screening for cervical lesions.
荧光原位杂交(Fluorescence in situ hybridization FISH)是20世纪80年代末期在原有的放射性原位杂交技术的基础上发展起来的一种非放射性原位杂交技术。目前这项技术已经广泛应用于动植物基因组结构研究、染色体精细结构变异分析、病毒感染分析、人类产前诊断、肿瘤遗传学和基因组进化研究待许多领域。FISH的基本原理是用已知的标记核酸为探针,按照碱基互补的原则,与待检材料中未知的单链核酸进行异性结合,形成可被检测的杂交双链核酸。由于DNA分子在染色体上是沿着染色体纵轴呈线性排列,因而可以探针直接与染色体进行杂交从而将特定的基因在染色体上定位。与传统的放射性标记原位杂交相比,荧光原位杂交具有快速、检测信号强、杂交特异性高和可以多重染色等特点,因此在分子细胞遗传学领域受到普遍关注。Fluorescence in situ hybridization (FISH) is a non-radioactive in situ hybridization technique developed on the basis of the original radioactive in situ hybridization technique in the late 1980s. At present, this technology has been widely used in animal and plant genomic structure research, chromosome fine structure variation analysis, viral infection analysis, human prenatal diagnosis, tumor genetics and genome evolution research in many fields. The basic principle of FISH is to use a known labeled nucleic acid as a probe to heterologously bind to an unknown single-stranded nucleic acid in a material to be tested according to the principle of base complementation to form a hybrid double-stranded nucleic acid which can be detected. Since the DNA molecules are linearly arranged along the longitudinal axis of the chromosome on the chromosome, the probe can be directly hybridized to the chromosome to localize the specific gene on the chromosome. Compared with traditional radiolabeled in situ hybridization, fluorescence in situ hybridization has the characteristics of rapid detection signal, high hybridization specificity and multi-staining, so it has received widespread attention in the field of molecular cytogenetics.
杂交所用的探针大致可以分类三类:1)染色体特异重复序列探针,例如α卫星、卫星III类的探针,其杂交靶位常大于1Mb,不含散在重复序列,与靶位结合紧密,杂交信 号强,易于检测;2)全染色体或染色体区域特异性探针,其由一条染色体或染色体上某一区段上极端不同的核苷酸片段所组成,可由克隆到噬菌体和质粒中的染色体特异大片段获得;3)特异性位置探针,由一个或几个克隆序列组成。The probes used for hybridization can be roughly classified into three categories: 1) chromosome-specific repeat probes, such as alpha satellites, satellite class III probes, which often have a hybrid target of more than 1 Mb, do not contain scattered repeats, and bind tightly to the target. Hybrid letter Strong, easy to detect; 2) Whole-chromosomal or chromosomal region-specific probes consisting of extremely different nucleotide segments on a chromosome or a segment of a chromosome, which can be cloned into phage and plasmid-specific chromosomes Large fragment acquisition; 3) specific position probe consisting of one or several cloned sequences.
探针的荧光素标记可以采用直接和间接标记的方法。间接标记是采用生物素标记DNA探针,杂交之后用藕联有荧光素亲和素或者链霉亲和素进行检测,同时还可以利用亲和素-生物素-荧光素复合物,将荧光信号进行放大,从而可以检测500bp左右的片段。而直接标记法是将荧光素直接与探针核苷酸或磷酸戊糖骨架共价结合,或在缺口平移法标记探针时将荧光素核苷三磷酸掺入。直接标记法在检测时步骤简单,临床使用方便。The fluorescein labeling of the probe can be performed by direct and indirect labeling. The indirect labeling is a biotin-labeled DNA probe, which is detected by fluorescein avidin or streptavidin after hybridization, and the avidin-biotin-fluorescein complex can also be used to fluoresce signals. Amplification is performed so that a fragment of about 500 bp can be detected. The direct labeling method is to directly bind fluorescein to the probe nucleotide or the pentose phosphate backbone, or to incorporate fluorescein nucleoside triphosphate in the nick translation labeling probe. The direct labeling method has simple steps in detection and is convenient for clinical use.
而目前对于TERC基因和/或MYC基因FISH检测,还缺少灵敏度和特异性高的检测试剂盒。At present, there is a lack of detection kits with high sensitivity and specificity for FISH detection of TERC gene and/or MYC gene.
发明内容Summary of the invention
本发明的目的之一是提供一种TERC基因和/或MYC基因检测探针及其制备方法,所制备的探针可用于检测TERC基因和MYC基因状态,即检测TERC基因和MYC基因的指拷贝数变化,具有很好的特异性。One of the objects of the present invention is to provide a TERC gene and/or MYC gene detecting probe and a preparation method thereof, which can be used for detecting the state of the TERC gene and the MYC gene, that is, detecting a copy of the TERC gene and the MYC gene. The number changes and has good specificity.
实现上述目的的技术方案如下。The technical solution for achieving the above object is as follows.
一种TERC基因和/或MYC基因检测探针的制备方法,包括以下步骤:A method for preparing a TERC gene and/or a MYC gene detection probe, comprising the steps of:
(1)选取针对TERC基因的BAC克隆为CTD-3214J12、RP11-816J6和RP11-778I3中至少一种,或选取BAC克隆为RP11-3K16、CTD-2582E13和RP11-886J24中的至少一种;和/或选取针对MYC基因的BAC克隆为CTD-2511O8,或选取BAC克隆为RP11-440N18和CTD-2205H22中的至少一种;(1) selecting a BAC clone for the TERC gene as at least one of CTD-3214J12, RP11-816J6, and RP11-778I3, or selecting a BAC clone as at least one of RP11-3K16, CTD-2582E13, and RP11-886J24; / or select the BAC clone for the MYC gene as CTD-2511O8, or select the BAC clone as at least one of RP11-440N18 and CTD-2205H22;
(2)对克隆分别提取质粒,得到质粒DNA,定量;(2) separately extracting a plasmid from the clone to obtain a plasmid DNA, and quantifying;
(3)用荧光素标记质粒DNA,针对同一种基因的质粒DNA所标记的荧光素相同,针对TERC基因和针对MYC基因的检测探针标记的荧光素的颜色不相同,即得。(3) The plasmid DNA is labeled with fluorescein, and the fluorescein labeled with the plasmid DNA of the same gene is the same, and the color of the fluoresin labeled with the TERC gene and the detection probe for the MYC gene is different.
在其中一个实施例中,针对TERC基因的所述BAC克隆为CTD-3214J12、RP11-816J6和RP11-778I3。In one embodiment, the BAC clones for the TERC gene are CTD-3214J12, RP11-816J6, and RP11-778I3.
在其中一个实施例中,针对TERC基因的所述BAC克隆为RP11-3K16、CTD-2582E13和RP11-886J24。In one embodiment, the BAC clones for the TERC gene are RP11-3K16, CTD-2582E13, and RP11-886J24.
在其中一个实施例中,针对MYC基因的BAC克隆为CTD-2511O8。In one embodiment, the BAC clone for the MYC gene is CTD-2511O8.
在其中一个实施例中,针对MYC基因的BAC克隆为RP11-440N18和CTD-2205H22。 In one of the examples, the BAC clones directed against the MYC gene are RP11-440N18 and CTD-2205H22.
在其中一个实施例中,标记荧光素选择本领域已知的荧光染料,优选地,荧光素为Alexa
Figure PCTCN2016105711-appb-000001
FITC、Alexa
Figure PCTCN2016105711-appb-000002
Rhodamine、Texas Red、pacific
Figure PCTCN2016105711-appb-000003
DEAC。
In one embodiment, the labeled fluorescein selects a fluorescent dye known in the art, preferably fluorescein is Alexa
Figure PCTCN2016105711-appb-000001
FITC, Alexa
Figure PCTCN2016105711-appb-000002
Rhodamine, Texas Red, pacific
Figure PCTCN2016105711-appb-000003
DEAC.
在其中一个实施例中,基因探针的标记可以采用现有技术中的方法将相应荧光素标记至双链核酸上,所述方法包括但不限于:随机引物法、切口平移等,标记基因探针可以使用市售的缺口平移标记试剂盒和/或随机引物标记试剂盒,优选abbott和/或Roche公司的Nick Translation Kit。本发明步骤(3)优选采用随机引物法、切口平移法对质粒DNA进行荧光素标记。In one embodiment, the labeling of the gene probe can be performed by labeling the corresponding fluorescein to the double-stranded nucleic acid by methods in the prior art, including but not limited to: random primer method, nick translation, etc., marker gene probe The needle can be a commercially available nick translation labeling kit and/or a random primer labeling kit, preferably abbott and/or Roche's Nick Translation Kit. In the step (3) of the present invention, the plasmid DNA is preferably subjected to fluorescein labeling by a random primer method or a nick translation method.
在其中一个实施例中,所述标记的温度为14℃-18℃,标记的时间为10-14小时。In one embodiment, the label has a temperature of from 14 ° C to 18 ° C and a labeling time of from 10 to 14 hours.
本发明的另一目的是提供一种TERC基因和MYC基因检测试剂盒。Another object of the present invention is to provide a TERC gene and MYC gene detecting kit.
实现该目的技术方案如下。The technical solution for achieving this purpose is as follows.
一种TERC基因和/或MYC基因检测试剂盒,包括有上述TERC基因和/或MYC基因检测探针。A TERC gene and/or MYC gene detection kit comprising the above TERC gene and/or MYC gene detection probe.
在其中一个实施例中,包括有用于内控的7号染色体鉴别探针(CSP 7)探针,该鉴别探针与TERC基因和MYC基因检测探针标记的荧光素的颜色不相同。In one embodiment, a chromosome 7 discrimination probe (CSP 7) probe for internal control is included, the identification probe being different in color from the fluorescein labeled by the TERC gene and the MYC gene detection probe.
在其中一个实施例中,还包括有用于封闭重复序列的COT Human DNA,和DAPI复染剂。In one embodiment, there is also a COT Human DNA for blocking the repeat sequence, and a DAPI counterstain.
本发明具有以下有益效果:The invention has the following beneficial effects:
(1)本发明通过筛选到最优的MYC基因扩增检测探针及其组合,采用FISH(Fluorescence In-Situ Hybridization)方法对TERC/MYC基因扩增进行检测,信号计数行准确、快速,且结果的重复性好;补充了临床中检测试剂依赖进口的不足,有利于后续该检测探针应用于临床研究,进行宫颈癌早期诊断、分级诊断和指导治疗等方面。(1) The present invention detects the TERC/MYC gene amplification by FISH (Fluorescence In-Situ Hybridization) by screening the optimal MYC gene amplification detection probe and its combination, and the signal counting is accurate and rapid, and The reproducibility of the results is good; supplementing the shortage of detection reagents in the clinic depends on the import, which is beneficial to the subsequent application of the detection probe in clinical research, early diagnosis, grading diagnosis and guiding treatment of cervical cancer.
(2)本发明优选克隆检测特异性好,通过本发明所述的TERC/MYC基因扩增检测试剂盒,从基因水平了解MYC基因状态改变,通过异常信号模式、异常信号细胞数的改变,来判断病理分级,在细胞学高度和低度病变中具诊断意义。(2) Preferably, the cloning detection specificity of the present invention is good, and the TERC/MYC gene amplification detection kit according to the present invention understands the state change of the MYC gene from the gene level, and changes the abnormal signal pattern and the number of abnormal signal cells. Judging pathological grades is diagnostic in cytological height and low-grade lesions.
附图说明DRAWINGS
图1A为是实施例1中TERC基因检测探针序列的示意图。Fig. 1A is a schematic diagram showing the TERC gene detecting probe sequence of Example 1.
图1B为是实施例1中MYC基因检测探针序列的示意图。Figure 1B is a schematic illustration of the MYC gene detection probe sequence of Example 1.
图2为实施例1中人外周血培养细胞片TERC基因和MYC基因检测探针FISH检测结果 图。2 is a FISH detection result of a human peripheral blood culture cell sheet TERC gene and a MYC gene detection probe in Example 1. Figure.
图3为实施例4中宫颈脱落细胞样本FISH检测结果图FISH检测结果图,其中,检测信号类型为2R2G2A,检测信号类型为2R2G2A,检测结果为:TERC基因未发生扩增,MYC基因未发生扩增。3 is a FISH detection result of a cervical exfoliated cell sample in Example 4, wherein the detection signal type is 2R2G2A, and the detection signal type is 2R2G2A, and the detection result is: the TERC gene is not amplified, and the MYC gene is not expanded. increase.
图4为实施例4中宫颈组织样本FISH检测结果图,其中,检测信号类型为2R2G2A,检测结果为:TERC基因未发生扩增,MYC基因未发生扩增。4 is a FISH detection result of the cervical tissue sample in Example 4, wherein the detection signal type is 2R2G2A, and the detection result is that the TERC gene is not amplified, and the MYC gene is not amplified.
图5为实施例4中宫颈组织样本FISH检测结果图,其中,检测信号类型为3R3G2A,检测结果为:TERC基因扩增,MYC基因扩增。Fig. 5 is a graph showing the results of FISH detection of cervical tissue samples in Example 4, wherein the detection signal type is 3R3G2A, and the detection results are: TERC gene amplification, MYC gene amplification.
具体实施方式detailed description
为了便于理解本发明,下面将对本发明进行更全面的描述。本发明可以以许多不同的形式来实现,并不限于本文所描述的实施例。相反地,提供这些实施例的目的是使对本发明的公开内容的理解更加透彻全面。In order to facilitate the understanding of the present invention, the present invention will be described more fully hereinafter. The invention can be embodied in many different forms and is not limited to the embodiments described herein. Rather, these embodiments are provided so that the understanding of the present disclosure will be more fully understood.
下列实施例中未注明具体条件的实验方法,通常按照常规条件,例如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。实施例中所用到的各种常用化学试剂,均为市售产品。Experimental methods in which the specific conditions are not indicated in the following examples are generally carried out according to the conditions described in conventional conditions, for example, Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturing conditions. The conditions recommended by the manufacturer. The various common chemical reagents used in the examples are commercially available products.
除非另有定义,本发明所使用的所有的技术和科学术语与属于本发明的技术领域的技术人员通常理解的含义相同。本发明的说明书中所使用的术语只是为了描述具体的实施例的目的,不用于限制本发明。本发明所使用的术语“和/或”包括一个或多个相关的所列项目的任意的和所有的组合。Unless otherwise defined, all technical and scientific terms used in the present invention have the same meaning meaning The terms used in the description of the present invention are for the purpose of describing the specific embodiments and are not intended to limit the invention. The term "and/or" used in the present invention includes any and all combinations of one or more of the associated listed items.
实施例1  TERC基因和MYC基因检测探针的制备Example 1 Preparation of TERC gene and MYC gene detection probe
本实施所述TERC检测探针的制备方法,包括以下步骤:The preparation method of the TERC detection probe of the present embodiment comprises the following steps:
(1)挑选包含目的基因TERC及两端序列的克隆,如图1A所示。GSP TERC包括两组探针,第一组探针包括第一探针、第二探针和第三探针,具体如下表,其购买于Invitrogen RP11BAC及CTD BAC克隆库。(1) A clone comprising the TERC of the gene of interest and the sequences at both ends was selected, as shown in Fig. 1A. The GSP TERC comprises two sets of probes, the first set of probes comprising a first probe, a second probe and a third probe, as shown in the following table, purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
第二组探针包括第四探针、第五探针和第六探针,具体如下表,其购买于Invitrogen RP11BAC及CTD BAC克隆库。The second set of probes included a fourth probe, a fifth probe, and a sixth probe, as specifically listed below, which were purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
以下分两组检测探针分别制备。The following two sets of detection probes were separately prepared.
第一组:First group:
组一Group one BACBAC 插入片段起止位置Insert start and end position
第一探针First probe CTD-3214J12CTD-3214J12 (chr3:169152582..169377736)225Kb(chr3: 169152582..169377736) 225Kb
第二探针Second probe RP11-816J6RP11-816J6 (chr3:169447253..169494853)48Kb(chr3: 169447253..169494853) 48Kb
第三探针Third probe RP11-778I3RP11-778I3 (chr3:169492904..169717073)224Kb(chr3:169492904..169717073)224Kb
组二Group two BACBAC 插入片段起止位置Insert start and end position
第四探针Fourth probe RP11-3K16RP11-3K16 (chr3:169249515..169449349)200Kb(chr3: 169249515..169449349) 200Kb
第五探针Fifth probe CTD-2582E13CTD-2582E13 (chr3:169408931..169606612)198Kb(chr3: 169408931..169606612) 198Kb
第六探针Sixth probe RP11-886J24RP11-886J24 (chr3:169580072..169746683 167Kb(chr3: 169580072..169746683 167Kb
本实施所述MYC检测探针的制备方法,包括以下步骤:The preparation method of the MYC detection probe of the present embodiment comprises the following steps:
挑选包含目的基因MYC及两端序列的克隆,如图1B所示。GSP MYC包括两组探针:Clones containing the MYC of the gene of interest and the sequences at both ends were selected as shown in Figure 1B. The GSP MYC includes two sets of probes:
第一组探针包括第一探针,具体如下表,其购买于Invitrogen RP11BAC及CTD BAC克隆库。The first set of probes included the first probe, as shown in the table below, which was purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
第二组探针包括第二探针和第三探针,具体如下表,其购买于Invitrogen RP11BAC及CTD BAC克隆库。The second set of probes included a second probe and a third probe, as detailed below, which were purchased from the Invitrogen RP11 BAC and CTD BAC clone libraries.
以下分两组检测探针分别制备。The following two sets of detection probes were separately prepared.
第一组:First group:
组一Group one BACBAC 插入片段起止位置Insert start and end position
第一探针First probe CTD-2511O8CTD-2511O8 chr8:128654266…128867152(213Kb)Chr8:128654266...128867152(213Kb)
第二组:Second Group:
组二Group two BACBAC 插入片段起止位置Insert start and end position
第二探针Second probe RP11-440N18RP11-440N18 chr8:128596756…128777986(181Kb)Chr8:128596756...128777986(181Kb)
第三探针Third probe CTD-2205H22CTD-2205H22 chr8:128740195…128887949(148Kb)Chr8:128740195...128887949(148Kb)
(2)GSP TERC和GSP MYC基因检测探针制备:使用Qiagen公司的Plasmid Maxi Kit,按照说明书要求的操作方法对不同BAC克隆分别进行超低拷贝质粒DNA提取,通过测定260nm和280nm处的吸光度对质粒DNA定量;采用高压灭菌的超纯水稀释为200ng/ul,采用1.5ml的离心管分装,最后将得到的对应TERC基因或MYC基因的1种或2种或4种相应组合的质粒DNA混合,-20℃密封保存。(2) Preparation of GSP TERC and GSP MYC gene detection probes: Ultra-low copy plasmid DNA extraction was performed on different BAC clones using Qiagen's Plasmid Maxi Kit according to the method described in the specification, and the absorbance at 260 nm and 280 nm was determined. Quantification of plasmid DNA; diluted with auto-sterilized ultrapure water to 200 ng / ul, divided into 1.5 ml centrifuge tubes, and finally obtained one or two or four corresponding combinations of TERC gene or MYC gene DNA was mixed and stored at -20 °C.
(3)通过切口平移方法对质粒DNA混合物进行荧光标记,针对GSP TERC基因的每种探针 标记的荧光素为Spectrum-Orange,针对GSP MYC基因每种探针标记的荧光素为Spectrum-Green。采用abbott的Nick Translation Kit,按如下方案,严格避光条件下在冰上配制PCR反应体系。(3) Fluorescent labeling of the plasmid DNA mixture by nick translation, each probe for the GSP TERC gene The labeled fluorescein is Spectrum-Orange, and the fluorescein labeled for each probe of the GSP MYC gene is Spectrum-Green. Using abbott's Nick Translation Kit, the PCR reaction system was prepared on ice under strict light conditions as follows.
Figure PCTCN2016105711-appb-000004
Figure PCTCN2016105711-appb-000004
配完后震荡混匀,在16℃标记12小时,再80℃孵育10分钟灭活酶。取5ul使用2%琼脂糖凝胶做电泳,要求在50bp~500bp之间存在弥散的带。After mixing, mix and shake, mark at 16 ° C for 12 hours, then incubate at 80 ° C for 10 minutes to inactivate the enzyme. 5 ul of 2% agarose gel was used for electrophoresis, and a band of between 50 bp and 500 bp was required.
对标记产物进行乙醇沉淀和浓缩,按如下方案在1.5ml离心管中依次加入醋酸钠和无水乙醇,避光、冰上配制:The labeled product was subjected to ethanol precipitation and concentration, and sodium acetate and absolute ethanol were sequentially added to a 1.5 ml centrifuge tube in the following manner, and protected from light and ice:
标记产物              45ulLabeled product 45ul
醋酸钠(3mol/L)        5ulSodium acetate (3mol/L) 5ul
无水乙醇              125ul。Anhydrous ethanol 125ul.
混匀后置于-70℃冰箱中至少2小时,4℃13000rpm离心30分钟,小心去上清,勿搅动沉淀,加入1ml的70%乙醇,4℃13000转/分钟离心15分钟,小心去上清,勿搅动沉淀,避光干燥。使用1ul纯化水溶解沉淀,分别获得GSP TERC和GSP MYC和基因探针,避光、-20℃储存。After mixing, put in a -70 ° C refrigerator for at least 2 hours, centrifuge at 13000 rpm for 30 minutes at 4 ° C, carefully remove the supernatant, do not stir the precipitate, add 1 ml of 70% ethanol, centrifuge at 13000 rpm for 15 minutes at 4 ° C, carefully go Clear, do not stir the sediment, dry away from light. The precipitate was dissolved in 1 ul of purified water to obtain GSP TERC and GSP MYC and gene probes, respectively, and stored at -20 ° C in the dark.
(4)GSP TERC和GSP MYC基因探针验证:分别使用TERC组一探针+MYC组一探针制备的杂交液,TERC组二探针+MYC组二探针制备的杂交液为待检测试剂,使用人类正常分裂中期淋巴细胞滴片进行探针验证(检测方法参考实施例3)。培养细胞包含中期或间期染色体DNA,荧光原位杂交时,染色体DNA表现为形态上可识别的染色体或是细胞核。如图2(应用于TERC组一探针+MYC组一探针的实验结果)所示:中期染色体的FISH杂交结果图。图中可见红色信号示GSP TERC,绿色信号示GSP MYC,青色信号CSP 7(7号染色体鉴定探针,购于D7Z1SpectrumAqua Probe,货号:06J54-007)。图中可见TERC/MYC/7号染色体探针信号明亮,人外周血培养细胞片中在中期染色体上可观察到灵敏度、特异 性100%;使用石蜡样本片进行杂交检测,可以清楚的记录三个靶标拷贝数。其它相应的探针验证实验结果与TERC组一探针+MYC组一探针的实验结果相同,图省略。(4) GSP TERC and GSP MYC gene probe verification: hybridization solution prepared by using one probe of TERC group + probe of MYC group, and hybridization solution prepared by two probes of TERC group and two probes of MYC group as reagents to be detected The probe was verified using human normal dividing metaphase lymphocyte droplets (detection method is referred to in Example 3). The cultured cells contain metaphase or interphase chromosomal DNA. When fluorescent in situ hybridization, the chromosomal DNA appears as a morphologically recognizable chromosome or nucleus. Figure 2 (experimental results applied to a probe in the TERC group + probe in the MYC group) shows the results of FISH hybridization of metaphase chromosomes. The red signal shows GSP TERC, the green signal shows GSP MYC, and the cyan signal CSP 7 (Chromosome 7 probe, purchased from D7Z1SpectrumAqua Probe, article number: 06J54-007). It can be seen that the TERC/MYC/7 chromosome probe signal is bright, and sensitivity and specificity can be observed on the metaphase chromosome in human peripheral blood cultured cell sheets. 100% sex; using a paraffin sample for hybridization detection, three target copy numbers can be clearly recorded. The results of other corresponding probe verification experiments are the same as those of the TERC group one probe + MYC group one probe, and the figures are omitted.
实施例2:TERC基因和MYC基因检测试剂盒制备方法Example 2: Preparation method of TERC gene and MYC gene detection kit
TERC基因和MYC基因检测试剂盒包括有TERC/MYC杂交液和DAPI复染剂两个组分,其中TERC和MYC杂交液包含实施例1所述的一组GSP MYC基因探针和一组GSP TERC基因探针的组合。TERC和MYC基因分别有两组检测探针,两种基因的两组可以随意组合,本实施例中,所述TERC基因和MYC基因检测试剂盒为四种,分别为:TERC(组一)+MYC(组一)的组合、TERC(组二)+MYC(组二)的组合、TERC(组一)+MYC(组二)的组合、TERC(组二)+MYC(组一)的组合、CSP7(7号染色体鉴定探针,购于D7Z1SpectrumAqua Probe,货号:06J54-007),用于杂交环境(促进杂交)的缓冲液组分、封闭重复序列的COT Human DNA等)。DAPI复染剂主要用于杂交后的细胞复染,其中的DAPI会与DNA结合,使得细胞核显示出蓝色荧光,含有对苯二胺的复染剂可以保持荧光的稳定。The TERC gene and MYC gene detection kit includes two components of a TERC/MYC hybridization solution and a DAPI counterstain, wherein the TERC and MYC hybridization solution comprises the set of GSP MYC gene probes described in Example 1 and a set of GSP TERCs. A combination of gene probes. The TERC and MYC genes have two sets of detection probes respectively, and the two groups of the two genes can be combined at will. In this embodiment, the TERC gene and the MYC gene detection kit are four, respectively: TERC (group one) + Combination of MYC (Group 1), combination of TERC (Group 2) + MYC (Group 2), combination of TERC (Group 1) + MYC (Group 2), TERC (Group 2) + MYC (Group 1), CSP7 (Chromosome 7 probe, available from D7Z1 Spectrum Aqua Probe, Cat. No. 06J54-007), buffer component for hybridization environment (promoting hybridization), COT Human DNA with closed repeats, etc.). DAPI counterstaining agent is mainly used for counterstaining of cells after hybridization, in which DAPI binds to DNA, so that the nucleus shows blue fluorescence, and the counterstaining agent containing p-phenylenediamine can maintain fluorescence stability.
具体配方如下:The specific formula is as follows:
(1)杂交液配制(1) Preparation of hybridization solution
Figure PCTCN2016105711-appb-000005
Figure PCTCN2016105711-appb-000005
(2)DAPI复染剂配制(2) DAPI counterstain preparation
10mg的对苯二胺溶于1ml的PBS中,调节pH为9.0,加入9ml甘油,反复震荡混匀,-20℃储存。取2.5μl的DAPI溶液(0.1mg/ml)溶于1ml抗褪色液中,避光条件下反复震荡混匀,-20℃避光密闭保存。10 mg of p-phenylenediamine was dissolved in 1 ml of PBS, the pH was adjusted to 9.0, 9 ml of glycerol was added, and the mixture was repeatedly shaken and stored at -20 ° C. 2.5 μl of DAPI solution (0.1 mg/ml) was dissolved in 1 ml of anti-fade solution, and shaken and shaken repeatedly in the dark, and stored at -20 °C in the dark.
(3)成品组装 (3) Finished product assembly
组分名称Component name 规格/10testSpecification/10test 数量Quantity
杂交液Hybrid solution 100μl/管100μl / tube 1管1 tube
DAPI复染剂DAPI counterstain 100μl/管100μl / tube 1管1 tube
说明书Instruction manual   1份1 serving
实施例3:TERC基因和MYC基因检测试剂盒的检测方法Example 3: Detection method of TERC gene and MYC gene detection kit
1、玻片预处理1, slide pretreatment
1.1玻片放入65±5℃恒温箱中烤片过夜;1.1 slides are placed in a 65±5°C incubator for overnight baking;
1.2取出玻片,将其放入室温二甲苯(或环保脱蜡剂)中10分钟;1.2 Remove the slide and place it in room temperature xylene (or environmental dewaxing agent) for 10 minutes;
1.3取出玻片,再将其放入另一缸室温二甲苯(或环保脱蜡剂)中10分钟;1.3 Remove the slide and place it in another cylinder of room temperature xylene (or environmental dewaxing agent) for 10 minutes;
1.4取出玻片,再将其放入无水乙醇中室温10分钟,去除残留二甲苯(或环保脱蜡剂);1.4 Remove the slide and place it in absolute ethanol for 10 minutes at room temperature to remove residual xylene (or environmental dewaxing agent);
1.5取出玻片,再将其放入100%、90%、70%梯度乙醇室温复水各3分钟;1.5 Remove the slide, and then put it into 100%, 90%, 70% gradient ethanol room temperature for 3 minutes each time;
1.6取出玻片,再将其放入灭菌纯化水中室温洗涤3分钟,用无绒纸巾吸取多余水分;1.6 Remove the slide, then put it in sterile purified water for 3 minutes at room temperature, and use the lint-free paper towel to absorb excess water;
1.7取出玻片,再将玻片放入1×EDTA修复液中,高压锅高压修复2分钟(高压锅有气放出,开始发出响声时计时);1.7 Remove the slide, then put the slide into the 1×EDTA repair solution, and pressurize the autoclave for 2 minutes (the pressure cooker has gas release, and the time when the sound starts to sound);
1.8冷却至室温后,取出玻片,自来水冲洗干净;1.8 After cooling to room temperature, remove the slide and rinse off the tap water;
1.9取出玻片,将其放入室温2×SSC中3分钟;1.9 remove the slide and place it in room temperature 2 × SSC for 3 minutes;
1.10取出玻片,室温晾干;1.10 remove the slide and let it dry at room temperature;
1.11将玻片正面朝上平放在架子上,在样本区域滴加适量的胃蛋白酶反应液,室温消化5~15分钟;1.11 Place the slide face up on the shelf, add appropriate amount of pepsin reaction solution in the sample area, and digest at room temperature for 5 to 15 minutes;
1.12将多余液体甩去,将其放入室温2×SSC中5分钟;1.12 remove excess liquid and place it in room temperature 2 × SSC for 5 minutes;
1.13取出玻片,再将其放入另一缸室温2×SSC中5分钟;1.13 remove the slide, and then put it into another cylinder at room temperature 2 × SSC for 5 minutes;
1.14取出玻片,再将其依次放入室温70%,90%,100%梯度乙醇脱水各2分钟;1.14 Take out the slides, and then put them into 70%, 90%, 100% gradient ethanol at room temperature for 2 minutes each time;
1.15取出玻片,室温晾干。1.15 Remove the slide and allow to dry at room temperature.
2、样品和探针同时变性(避光操作)2. Simultaneous denaturation of samples and probes (light protection operation)
2.1从-20±5℃冰箱中取出杂交液,震荡混匀,瞬时离心;2.1 Remove the hybridization solution from the -20±5°C refrigerator, shake and mix, and centrifuge instantaneously;
2.2加10μl的杂交液到杂交区域,迅速盖上22×22mm盖玻片,轻压使杂交液均匀分布,避免产生气泡;2.2 Add 10 μl of the hybridization solution to the hybridization area, quickly cover the 22×22mm coverslip, and gently press to make the hybridization solution evenly distributed to avoid air bubbles;
2.3用橡皮胶沿盖玻片边缘封片,完全覆盖盖玻片和载玻片接触的部位;2.3 Use rubber rubber to seal the edge of the cover glass to completely cover the contact between the cover glass and the slide;
2.4将玻片放入杂交仪中,湿润原位杂交仪湿度条,插入湿条,盖上杂交仪上盖,设置“Denat&Hyb”程序,变性85℃ 5分钟,杂交37℃ 10~18小时; 2.4 Place the slide into the hybridization instrument, wet the humidity strip of the in situ hybridization instrument, insert the wet strip, cover the top of the hybridization instrument, set the “Denat&Hyb” program, denature at 85 ° C for 5 minutes, and hybridize at 37 ° C for 10 to 18 hours;
(若无杂交仪,可使用替代仪器,如恒温热台进行变性,电热烘箱/或水浴锅进行杂交,需注意温度准确及保持杂交湿度)。(If there is no hybrid instrument, you can use alternative instruments, such as constant temperature hot stage for denaturation, electric heating oven / or water bath for hybridization, pay attention to accurate temperature and maintain hybrid humidity).
3、杂交后洗涤及复染(避光操作)3. Washing and counterstaining after hybridization (protection from light)
3.1洗涤前30分钟,将配制好的洗液I,洗液II,放入37±1℃的水浴中,测量以确保温度合适;3.1 30 minutes before washing, the prepared lotion I, lotion II, placed in a water bath of 37 ± 1 ° C, measured to ensure that the temperature is appropriate;
3.2关闭杂交仪电源,将玻片取出,轻轻撕去橡皮胶,移去盖玻片(若盖玻片难以去除,可以将其放入洗液I中微微摇晃,以利于其脱落;3.2 Turn off the power of the hybridization instrument, take out the slide, gently remove the rubber glue, and remove the cover slip. (If the cover slip is difficult to remove, it can be shaken in the wash solution I to facilitate its falling off;
3.3玻片放入37±1℃洗液I(2×SSC)中10分钟;3.3 slides were placed in 37 ± 1 ° C lotion I (2 × SSC) for 10 minutes;
3.4取出玻片,再将其放入37±1℃洗液II(0.1%NP-40/2×SSC)中5分钟;3.4 remove the slide, and then put it into 37 ± 1 ° C lotion II (0.1% NP-40/2 × SSC) for 5 minutes;
3.5取出玻片,室温70%乙醇中3分钟;3.5 Remove the slides and let them stand in 70% ethanol for 3 minutes at room temperature;
3.6取出玻片,暗处自然干燥玻片;3.6 Remove the slide and naturally dry the slide in the dark;
3.7室温,滴加10μl DAPI复染剂到22×22mm的盖玻片,载玻片目标区域朝下,轻放于盖玻片上,轻压,避免产生气泡,在暗处存放,待观察。3.7 Room temperature, add 10μl DAPI counterstain to 22×22mm coverslip, the target area of the slide is facing down, put it on the cover slip, gently press to avoid air bubbles, store in the dark, to be observed.
4、结果分析4, the result analysis
相关荧光和DAPI需用合适的滤块观察。The relevant fluorescence and DAPI need to be observed with a suitable filter block.
4.1使用合适的滤镜,在10×物镜下寻找,在100×物镜下计数;4.1 Use a suitable filter, look under a 10× objective, and count under a 100× objective;
4.2调整合适的焦距,对信号和背景有明确的概念;信号点应位于细胞内;当细胞外存在荧光信号点时,要注意与细胞内信号点区分,最好能避开该区域进行计数;4.2 Adjust the appropriate focal length, have a clear concept of signal and background; the signal point should be located in the cell; when there is a fluorescent signal point outside the cell, it should be distinguished from the intracellular signal point, it is best to avoid the area for counting;
4.3扫视几个细胞区域,要求细胞边界完整、无重叠,DAPI染色均匀,绿色和红色信号清晰;跳过信号弱及没有特定信号或高背景的细胞计数;需要主观辨别的细胞不计数;4.3 glance at several cell regions, requiring complete cell boundaries, no overlap, uniform DAPI staining, clear green and red signals, skip cell counts and cell counts without specific signals or high background; cells that require subjective discrimination are not counted;
4.4从选择区域的左上角开始分析,从左到右扫视,观察多个视野;4.4 Start the analysis from the upper left corner of the selection area, scan from left to right, and observe multiple fields of view;
4.5转到100×物镜,调整焦距,在核的不同层次找到所有信号点;4.5 Go to the 100× objective lens, adjust the focal length, and find all signal points at different levels of the core;
4.6在每个细胞内计数信号点;调焦找到每个细胞内的所有信号点,计数一个区域内的两种信号,只计数每种颜色有1个或更多FISH信号的,没有信号或只有单种颜色信号的细胞不计数;记录观察到的细胞总数(正常及异常信号数目)。4.6 Count signal points in each cell; focus to find all signal points in each cell, count two signals in one region, count only one or more FISH signals per color, no signal or only Cells with a single color signal were not counted; the total number of cells observed (normal and abnormal signal number) was recorded.
4.6.1正常信号:2R2G2A;4.6.1 normal signal: 2R2G2A;
4.6.2异常信号:>2R2G2A(TERC扩增),2G>2G2A(MYC扩增)。4.6.2 Abnormal signal: >2R2G2A (TERC amplification), 2G>2G2A (MYC amplification).
4.7设定阴性阈值4.7 setting the negative threshold
随机选取10例以上的样本当阴性质控片。每张阴性质控片随机计数信号完整的100个细胞,统计每例样本中出现异常信号细胞的数目及百分比,统计百分比的平均值及标准差,阴性阈值设定为平均值+3倍标准差。 More than 10 samples were randomly selected as negative control tablets. Each negative control panel randomly counts the complete 100 cells, counts the number and percentage of abnormal signal cells in each sample, the average and standard deviation of the statistical percentage, and the negative threshold is set to the mean + 3 standard deviation .
实施例4:TERC基因和MYC基因检测试剂盒临床使用评价Example 4: Clinical evaluation of TERC gene and MYC gene detection kit
使用实施例1所述TERC基因和MYC基因检测探针组合,实施例2所述4种检测试剂盒(TERC(组一)+MYC(组一)的组合、TERC(组二)+MYC(组二)的组合、TERC(组一)+MYC(组二)的组合、TERC(组二)+MYC(组一)的组合)对20份临床样本(样本类型为福尔马林固定石蜡包埋组织样本和宫颈脱落细胞样本,其经过病理检测确诊,具体见下表),分别进行检测。两种探针组合的检测一致性佳。与市售商品化试剂比较,检测结果完全一致,试剂的特异性和灵敏度高。图3和图4以及图5为TERC(组一)+MYC(组一)的组合试剂盒检测结果,图3和图4中所示,检测信号类型为2R2G2A,TERC/MYC未发生扩增;图5中所示,检测信号类型为3R3G2A,TERC/MYC基因扩增。其它不同三种基因探针的组合的检测结果相同,图省略。Using the TERC gene and MYC gene detection probe combination described in Example 1, the four detection kits described in Example 2 (TERC (Group 1) + MYC (Group 1) combination, TERC (Group 2) + MYC (Group) 2) combination, TERC (group 1) + MYC (group 2) combination, TERC (group 2) + MYC (group 1) combination) for 20 clinical samples (sample type is formalin fixed paraffin embedded) Tissue samples and cervical exfoliated cell samples were diagnosed by pathological examination, as shown in the table below, and tested separately. The detection of the two probe combinations is consistent. Compared with commercially available commercial reagents, the test results are completely consistent, and the specificity and sensitivity of the reagents are high. Figure 3 and Figure 4 and Figure 5 show the combined kit detection results of TERC (Group 1) + MYC (Group 1). As shown in Figure 3 and Figure 4, the detection signal type is 2R2G2A, and TERC/MYC is not amplified; As shown in Fig. 5, the detection signal type is 3R3G2A, and the TERC/MYC gene is amplified. The detection results of the combinations of the other three different gene probes are the same, and the figures are omitted.
Figure PCTCN2016105711-appb-000006
Figure PCTCN2016105711-appb-000006
Figure PCTCN2016105711-appb-000007
Figure PCTCN2016105711-appb-000007
TERC(组一)+MYC(组二)的组合、TERC(组二)+MYC(组一)的组合的组合的检测结果,与上表所示结果相同,因篇幅的原因,具体结果省略。The combination of the combination of TERC (group 1) + MYC (group 2), TERC (group 2) + MYC (group 1) is the same as the results shown in the above table, and the specific results are omitted for reasons of space.
本发明中,针对TERC基因和MYC基因,分别各使用一种探针也能实现相应的检测,但相对探针组合使用而言,组合探针的使用,检测信号会更好,特别是本实施例中TERC(组一)+MYC(组一)的以及TERC(组二)+MYC(组二)组合检测的信号最好。理论上探针长度越长,实际检测时获得的荧光信号亮度越明亮,但因为可能涉及到更多基因序列,所得到的信号复杂性可能性增多,对检测实现的难度也增强。本发明所述针对TERC基因的组一和组二的检测探针的BAC克隆其长度分别为:564Kb和497Kb,均为包含TERC基因及其两端序列的核酸混合物。本发明所述针对MYC基因的组一和组二的检测探针的BAC克隆总长度分别为:213Kb和291Kb,均为包含MYC基因及其两端序列的核酸混合物。In the present invention, the detection of the TERC gene and the MYC gene by using one probe can also achieve the corresponding detection, but the use of the combined probe can be better than the combination of the probes, especially in the present embodiment. In the example, the signal of TERC (group 1) + MYC (group 1) and TERC (group 2) + MYC (group 2) combination detection is the best. Theoretically, the longer the length of the probe, the brighter the fluorescence signal obtained during actual detection, but because more gene sequences may be involved, the complexity of the resulting signal is increased, and the difficulty of detection is also enhanced. The BAC clones of the detection probes of Groups 1 and 2 for the TERC gene of the present invention have lengths of 564 Kb and 497 Kb, respectively, and are nucleic acid mixtures comprising the TERC gene and its both ends. The total lengths of the BAC clones of the detection probes of Groups 1 and 2 for the MYC gene of the present invention are: 213 Kb and 291 Kb, respectively, which are nucleic acid mixtures comprising the MYC gene and its both ends.
发明人在对本发明所述探针验证中发现,较长的检测探针确实获得更强的荧光信号,并且在对临床样本的检测验证中也获得了相同的结果。因此,在荧光探针的设计中,可以通过适当延长荧光探针长度增加信号亮度,但具体如何组合使用,存在的一定的技术困难,要实现很好的检测结果,除了设计中的经验之外,还需通过临床样本验证评估信号类型差 异。The inventors found in the verification of the probe of the present invention that the longer detection probe did obtain a stronger fluorescent signal, and the same result was obtained in the verification of the clinical sample. Therefore, in the design of the fluorescent probe, the signal brightness can be increased by appropriately extending the length of the fluorescent probe, but how to use it in combination, there are certain technical difficulties, and a good detection result is to be achieved, in addition to the experience in design. It is also necessary to verify the difference in signal type through clinical sample verification. different.
从上述实验检测结果知,在对这些样本进行分子标志物检测后,可以据检测结果对样本进行分子分型,依据检测指标的意义,用于临床治疗方案制定、用药选择和疗效判断。From the above experimental results, it is known that after molecular markers are detected for these samples, the samples can be molecularly classified according to the detection results, and used for clinical treatment plan formulation, drug selection and efficacy judgment according to the significance of the detection indicators.
所述实施例的各技术特征可以进行任意的组合,为使描述简洁,未对上述实施例中的各个技术特征所有可能的组合都进行描述,然而,只要这些技术特征的组合不存在矛盾,都应当认为是本说明书记载的范围。The technical features of the embodiments may be combined in any combination. For the sake of brevity of description, all possible combinations of the technical features in the above embodiments are not described. However, as long as there is no contradiction in the combination of these technical features, It should be considered as the scope of this manual.
以上所述实施例仅表达了本发明的几种实施方式,其描述较为具体和详细,但并不能因此而理解为对发明专利范围的限制。应当指出的是,对于本领域的普通技术人员来说,在不脱离本发明构思的前提下,还可以做出若干变形和改进,这些都属于本发明的保护范围。因此,本发明专利的保护范围应以所附权利要求为准。 The above-described embodiments are merely illustrative of several embodiments of the present invention, and the description thereof is more specific and detailed, but is not to be construed as limiting the scope of the invention. It should be noted that a number of variations and modifications may be made by those skilled in the art without departing from the spirit and scope of the invention. Therefore, the scope of the invention should be determined by the appended claims.

Claims (10)

  1. 一种TERC基因和/或MYC基因检测探针的制备方法,其特征在于,包括以下步骤:A method for preparing a TERC gene and/or a MYC gene detecting probe, comprising the steps of:
    (1)选取针对TERC基因的BAC克隆为CTD-3214J12、RP11-816J6和RP11-778I3中至少一种,或选取BAC克隆为RP11-3K16、CTD-2582E13和RP11-886J24中的至少一种;和/或选取针对MYC基因的BAC克隆为CTD-2511O8,或选取BAC克隆为RP11-440N18和CTD-2205H22中的至少一种;(1) selecting a BAC clone for the TERC gene as at least one of CTD-3214J12, RP11-816J6, and RP11-778I3, or selecting a BAC clone as at least one of RP11-3K16, CTD-2582E13, and RP11-886J24; / or select the BAC clone for the MYC gene as CTD-2511O8, or select the BAC clone as at least one of RP11-440N18 and CTD-2205H22;
    (2)对克隆分别提取质粒,得到质粒DNA,定量;(2) separately extracting a plasmid from the clone to obtain a plasmid DNA, and quantifying;
    (3)用荧光素标记质粒DNA,针对同一种基因的质粒DNA所标记的荧光素相同,针对TERC基因和针对MYC基因的检测探针标记的荧光素的颜色不相同,即得。(3) The plasmid DNA is labeled with fluorescein, and the fluorescein labeled with the plasmid DNA of the same gene is the same, and the color of the fluoresin labeled with the TERC gene and the detection probe for the MYC gene is different.
  2. 根据权利要求1所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,针对TERC基因的BAC克隆为CTD-3214J12、RP11-816J6和RP11-778I3,或为BAC克隆为RP11-3K16、CTD-2582E13和RP11-886J24。The method for preparing a TERC gene and/or MYC gene detecting probe according to claim 1, wherein the BAC clone for the TERC gene is CTD-3214J12, RP11-816J6 and RP11-778I3, or the BAC clone is RP11- 3K16, CTD-2582E13 and RP11-886J24.
  3. 根据权利要求1所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,针对MYC基因的所述BAC克隆为CTD-2511O8,或针对MYC基因的所述BAC克隆为RP11-440N18和CTD-2205H22。The method for producing a TERC gene and/or MYC gene detecting probe according to claim 1, wherein the BAC clone for the MYC gene is CTD-2511O8, or the BAC clone for the MYC gene is RP11-440N18 And CTD-2205H22.
  4. 根据权利要求1所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,针对TERC基因的BAC克隆为RP11-3K16、CTD-2582E13和RP11-886J24,以及针对MYC基因的所述BAC克隆为RP11-440N18和CTD-2205H22。The method for producing a TERC gene and/or MYC gene detecting probe according to claim 1, wherein the BAC clones for the TERC gene are RP11-3K16, CTD-2582E13 and RP11-886J24, and the MYC gene The BAC clones were RP11-440N18 and CTD-2205H22.
  5. 根据权利要求1所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,针对TERC基因的BAC克隆为BAC克隆为CTD-3214J12、RP11-816J6和RP11-778I3,以及针对MYC基因的所述BAC克隆为CTD-2511O8。The method for preparing a TERC gene and/or MYC gene detecting probe according to claim 1, wherein the BAC clone for the TERC gene is a BAC clone of CTD-3214J12, RP11-816J6 and RP11-778I3, and a MYC gene. The BAC clone was CTD-2511O8.
  6. 根据权利要求1所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,所述荧光素为Alexa
    Figure PCTCN2016105711-appb-100001
    FITC、Alexa
    Figure PCTCN2016105711-appb-100002
    Rhodamine、Texas Red、pacific
    Figure PCTCN2016105711-appb-100003
    DEAC。
    The method for preparing a TERC gene and/or MYC gene detecting probe according to claim 1, wherein the fluorescein is Alexa
    Figure PCTCN2016105711-appb-100001
    FITC, Alexa
    Figure PCTCN2016105711-appb-100002
    Rhodamine, Texas Red, pacific
    Figure PCTCN2016105711-appb-100003
    DEAC.
  7. 根据权利要求1-6任一项所述TERC基因和/或MYC基因检测探针的制备方法,其特征在于,步骤(3)采用随机引物法或切口平移法对质粒DNA进行荧光素标记,所述标记的温度为14℃-18℃,标记的时间为10-14小时。The method for preparing a TERC gene and/or MYC gene detecting probe according to any one of claims 1 to 6, wherein the step (3) adopts a random primer method or a nick translation method to perform fluorescein labeling on the plasmid DNA. The temperature of the label is 14 ° C - 18 ° C and the time of labeling is 10-14 hours.
  8. 根据权利要求1-7任一项所述的制备方法得到的TERC基因和/或MYC基因检测探针。The TERC gene and/or MYC gene detecting probe obtained by the production method according to any one of claims 1 to 7.
  9. 一种TERC基因和/或MYC基因检测试剂盒,其特征在于,包括有权利要求8所述的TERC基因和MYC基因检测探针。 A TERC gene and/or MYC gene detecting kit comprising the TERC gene of claim 8 and a MYC gene detecting probe.
  10. 根据权利要求9所述TERC基因和/或MYC基因检测试剂盒,其特征在于,还包括有用于内控的7号染色体鉴别探针,该鉴别探针与TERC基因和MYC基因检测探针标记的荧光素的颜色不相同;还包括有用于封闭重复序列的COT Human DNA,和DAPI复染剂。 The TERC gene and/or MYC gene detection kit according to claim 9, further comprising a chromosome 7 discrimination probe for internal control, the identification probe and the fluorescent label of the TERC gene and the MYC gene detection probe The colors of the pigments are different; there are also COT Human DNA for blocking repeats, and DAPI counterstains.
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