WO2016031611A1 - Mutant enzyme and application thereof - Google Patents

Mutant enzyme and application thereof Download PDF

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WO2016031611A1
WO2016031611A1 PCT/JP2015/073060 JP2015073060W WO2016031611A1 WO 2016031611 A1 WO2016031611 A1 WO 2016031611A1 JP 2015073060 W JP2015073060 W JP 2015073060W WO 2016031611 A1 WO2016031611 A1 WO 2016031611A1
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amino acid
acid sequence
enzyme
seq
mutant
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PCT/JP2015/073060
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Japanese (ja)
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享一 西尾
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天野エンザイム株式会社
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/10Cells modified by introduction of foreign genetic material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/26Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving oxidoreductase
    • C12Q1/28Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving oxidoreductase involving peroxidase

Definitions

  • the present invention relates to a mutant enzyme and a method for modifying the enzyme.
  • a dehydrogenase (dehydrogenase) glucose oxidase and a method for preparing the same are provided.
  • This application is based on the priority based on Japanese Patent Application No. 2014-176042 filed on August 29, 2014, and on the basis of Japanese Patent Application No. 2014-233291 filed on November 18, 2014 Priority is claimed and the entire contents of these patent applications are incorporated by reference.
  • the biosensor uses glucose oxidase (hereinafter abbreviated as “GO”) and glucose dehydrogenase (hereinafter abbreviated as “GDH”), which are enzymes using glucose as a substrate.
  • GO glucose oxidase
  • GDH glucose dehydrogenase
  • GO has the advantage of high specificity for glucose and excellent thermal stability, the measurement using it is easily affected by dissolved oxygen in the measurement sample, and dissolved oxygen affects the measurement results. The problem of being affected is pointed out.
  • PQQ-GDH GDH using pyrroloquinoline quinone (PQQ) as a coenzyme
  • PQQ-GDH pyrroloquinoline quinone
  • PQQ-GDH pyrroloquinoline quinone
  • GDH uses flavin adenine dinucleotide as a coenzyme as an enzyme that is not affected by dissolved oxygen and acts on glucose in the absence of NAD (P) (hereinafter abbreviated as “FAD-GDH”) It has been known. So far, FAD-GDH has been obtained from Aspergillus oryzae (Non-Patent Documents 1 to 4, Patent Document 4) and Aspergillus tereus (Patent Document 5), respectively. These FAD-GDHs are reactive to xylose. Is relatively high, there is room for improvement in terms of accuracy when measuring blood sugar in those undergoing a xylose tolerance test. In addition, the modification
  • an object of the present invention is to provide a highly practical mutant enzyme having improved substrate affinity as an enzyme for a biosensor used for blood glucose measurement or the like.
  • glucose oxidase does not have the above-mentioned problems of FAD-GDH, as reported in the above-mentioned Patent Document 21, and Focusing on the fact that FAD-GDH has a relatively high homology in amino acid sequence, a new approach was adopted in which GDH activity was imparted to GO, that is, GO was converted to GDH. As a result, GO was successfully converted to GDH, a mutant GO with high GDH activity was created, and at the same time, an amino acid position effective for GO mutation was also successfully identified (Patent Document 21).
  • the substrate affinity of the enzyme obtained in the above report was examined, the substrate affinity was lower than that of GO before mutation. In view of this fact, it was considered that improving the affinity of the substrate was important for improving the performance of the sensor, and the study was advanced. As a result of intensive studies, the inventors succeeded in obtaining a mutant enzyme having improved substrate affinity and succeeded in identifying a mutation position effective for improving substrate specificity.
  • Mutant enzyme comprising an amino acid sequence in which the amino acid of (1) below is substituted with another amino acid in the amino acid sequence of glucose oxidase derived from a microorganism: (1) An amino acid corresponding to the 444th amino acid in the amino acid sequence shown in SEQ ID NO: 1.
  • the mutant enzyme according to [1] wherein the amino acid after substitution is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine, or isoleucine.
  • the mutant enzyme according to [1] wherein the amino acid after substitution is arginine, glutamic acid or glutamine.
  • the amino acid sequence of (1) to [4] is composed of an amino acid sequence in which the amino acid of (2) below is substituted with another amino acid:
  • the mutant enzyme according to [5], wherein the amino acid after substitution for the amino acid of (2) is glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid.
  • mutant enzyme according to any one of [1] to [6], wherein the amino acid sequence of the microorganism-derived glucose oxidase is the amino acid sequence of SEQ ID NO: 1, 2, or 15.
  • mutant enzyme according to [1] comprising the amino acid sequence of SEQ ID NO: 3 or 4.
  • a gene encoding the mutant enzyme according to any one of [1] to [8]. [10] The gene according to [9], comprising the nucleotide sequence of SEQ ID NO: 5 or 6.
  • a recombinant DNA comprising the gene according to [9] or [10].
  • a recombinant vector comprising the gene according to [9] or [10].
  • a glucose measuring method wherein glucose in a sample is measured using the mutant enzyme according to any one of [1] to [8].
  • a glucose measurement reagent comprising the mutant enzyme according to any one of [1] to [8].
  • a glucose measurement kit comprising the glucose measurement reagent according to [15].
  • a method comprising reducing the amount of glucose in an industrial product or a raw material thereof using the mutant enzyme according to any one of [1] to [8].
  • An enzyme agent comprising the mutant enzyme according to any one of [1] to [8].
  • a method for designing a mutant enzyme comprising the following steps (i) and (ii): (i) A step of specifying the following amino acid (1) in the amino acid sequence of the enzyme to be mutated, which is a microorganism-derived glucose oxidase: (1) an amino acid corresponding to the 444th amino acid of the amino acid sequence shown in SEQ ID NO: 1; (ii) A step of constructing an amino acid sequence in which the amino acid sequence specified in step (i) is substituted with another amino acid based on the amino acid sequence of the enzyme to be mutated.
  • step (i) The design method according to [19], wherein in step (i), the following amino acid (2) is specified in addition to the amino acid (1): (2) An amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1.
  • the design method according to [19] or [20] wherein the microorganism-derived glucose oxidase is glucose oxidase of Aspergillus niger or Penicillium amagasakiens.
  • the amino acid sequence of glucose oxidase is the amino acid sequence of SEQ ID NO: 1 or 2.
  • a method for preparing a mutant enzyme comprising the following steps (I) to (III): (I) a step of preparing a nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4, or the amino acid sequence constructed by the design method according to any one of [19] to [22]; (II) expressing the nucleic acid; and (III) recovering the expression product.
  • FIG. Continuation of FIG. Continuation of FIG. GDH activity and GO activity of various mutated enzymes Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO
  • the multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared.
  • Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO
  • the multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared.
  • Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO
  • the multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared.
  • mutant enzyme is an enzyme obtained by mutating or modifying an “underlying enzyme” by the technique disclosed in this specification. “Mutant enzyme”, “mutant enzyme” and “modified enzyme” are used interchangeably.
  • the underlying enzyme is typically a wild type enzyme. However, this does not preclude the application of an enzyme that has already been subjected to artificial manipulation to the present invention as a “base enzyme”. In this specification, the “base enzyme” is also referred to as “mutation target enzyme” or “target enzyme”.
  • Modify one enzyme (referred to as A enzyme for convenience) to be similar to another enzyme (referred to as enzyme B for convenience), that is, to make one or more properties of enzyme A closer to the corresponding properties of enzyme B This is referred to as “converting enzyme A into enzyme B”.
  • characteristics are enzyme activity (eg glucose oxidase activity when enzyme A is glucose oxidase), substrate specificity, temperature characteristics (optimum temperature, temperature stability, etc.), pH characteristics (optimum pH) PH stability), coenzyme specificity, and reactivity with mediators.
  • the mutant GO of the present invention has an amino acid sequence in which the following amino acid (1) is substituted with another amino acid in the amino acid sequence of GO (mutation target enzyme) derived from a microorganism.
  • the amino acid at position 444 is important for the affinity for glucose when GO is converted to glucose dehydrogenase (GDH).
  • GDH glucose dehydrogenase
  • the affinity for glucose is improved by mutating an amino acid corresponding to the amino acid.
  • the term “corresponding” when used for amino acid residues in the present specification means that the protein (enzyme) to be compared makes an equivalent contribution to the performance of its function.
  • an amino acid sequence to be compared with a reference amino acid sequence that is, the amino acid sequence of SEQ ID NO: 1 is arranged so that an optimal comparison can be made while considering partial homology of the primary structure (amino acid sequence).
  • the amino acid at the position corresponding to a specific amino acid in the reference amino acid sequence is identified as a “corresponding amino acid”.
  • the “corresponding amino acid” can also be specified by comparing three-dimensional structures (three-dimensional structures). A highly reliable comparison result can be obtained by using the three-dimensional structure information.
  • a method of performing alignment while comparing atomic coordinates of the three-dimensional structures of a plurality of enzymes can be employed.
  • the three-dimensional structure information of the enzyme to be mutated can be obtained from, for example, Protein Data Bank (http://www.pdbj.org/index_j.html).
  • Crystallize the protein is indispensable for determining the three-dimensional structure, but it also has industrial utility as a high purity protein purification method and a high density and stable storage method. In this case, it is preferable to crystallize a protein bound with a substrate or an analog compound thereof as a ligand.
  • Diffraction data is collected by irradiating the produced crystal with X-rays. In many cases, protein crystals are damaged by X-ray irradiation and the diffraction ability deteriorates. In that case, a cryogenic measurement technique in which the crystal is rapidly cooled to about ⁇ 173 ° C.
  • the heavy atom isomorphous substitution method is a method of obtaining phase information by introducing a metal atom having a large atomic number such as mercury or platinum into a crystal and utilizing the contribution of the metal atom to the X-ray diffraction data of the large X-ray scattering ability. .
  • the determined phase can be improved by smoothing the electron density of the solvent region in the crystal. Since water molecules in the solvent region have large fluctuations, almost no electron density is observed, so by approximating the electron density in this region to 0, it is possible to approach the true electron density and thus the phase is improved. . Further, when a plurality of molecules are contained in the asymmetric unit, the phase is further improved by averaging the electron density of these molecules. The protein model is fit to the electron density map calculated using the improved phase in this way. This process is performed on a computer graphic using a program such as QUANTA from MSI (USA). Thereafter, the structure is refined using a program such as X-PLOR of MSI, and the structural analysis is completed.
  • crystal structure of a similar protein When the crystal structure of a similar protein is known with respect to the target protein, it can be determined by a molecular replacement method using the atomic coordinates of the known protein. Molecular replacement and structural refinement can be performed using programs such as CNS_SOLVE ver.11.
  • Examples of GO derived from microorganisms that are enzymes to be mutated are GO derived from Aspergillus niger and GO derived from Penicillium amagasakiens.
  • the amino acid sequence of GO derived from Aspergillus niger and the amino acid sequence of GO derived from Penicillium amagasakiens are shown in SEQ ID NO: 1 and SEQ ID NO: 2, respectively.
  • an alignment comparison of these two amino acid sequences is shown in FIG.
  • the amino acid of the above (1) is the 444th amino acid of SEQ ID NO: 1.
  • Penicillium amagasakiens-derived GO having the amino acid sequence of SEQ ID NO: 2 is used as the enzyme to be mutated, the amino acid of the above (1) is the 444th amino acid of SEQ ID NO: 2.
  • amino acid (2) is also substituted. That is, as a preferred embodiment of the present invention, a mutant GO in which two amino acids are substituted is provided.
  • the amino acid (2) above is important for GDH activity of GO.
  • a GDHase having high affinity for glucose is obtained by substituting the amino acid of (2) in addition to the amino acid of (1).
  • the type of amino acid after substitution is not particularly limited.
  • the amino acid (1) is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine or isoleucine.
  • Arginine, glutamic acid or glutamine is preferable, and arginine is particularly preferable.
  • the amino acid (2) the amino acid after substitution is, for example, glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid. Preferred is cysteine or proline, and particularly preferred is proline.
  • mutant enzyme of the present invention include an enzyme having the amino acid sequence of SEQ ID NO: 3 and an enzyme having the amino acid sequence of SEQ ID NO: 4.
  • the former is an enzyme in which the amino acid of (1) above is substituted with arginine for Aspergillus niger-derived GO
  • the latter is an enzyme in which the amino acid of (1) above is substituted with arginine for Aspergillus niger-derived GO.
  • the protein after the mutation may have the same function as the protein before the mutation. That is, the amino acid sequence mutation does not substantially affect the protein function, and the protein function may be maintained before and after the mutation.
  • a mutant GO consisting of an amino acid sequence in which the amino acid in (1) above is replaced with another amino acid, or an amino acid in which the amino acids in (1) and (2) above are each replaced with another amino acid.
  • a slight difference in the amino acid sequence is observed when compared with the mutant GO consisting of the sequence (however, the difference in the amino acid sequence occurs at a position other than the position where the amino acid substitution is performed), but the characteristics are substantially Those in which no difference is observed can be regarded as substantially the same enzyme as the mutant GO.
  • “Slight difference in amino acid sequence” as used herein typically means deletion of one to several amino acids (upper limit is 3, 5, 7, 10) constituting an amino acid sequence, It means that a mutation (change) has occurred in the amino acid sequence by substitution or addition, insertion, or a combination of 1 to several amino acids (the upper limit is 3, 5, 7, 10).
  • the identity (%) between the amino acid sequence of “substantially identical enzyme” and the amino acid sequence of the above-mentioned mutant GO as a reference is preferably 90% or more, more preferably 95% or more, and still more preferably 98% or more, and most preferably 99% or more.
  • the difference in amino acid sequence may occur at a plurality of positions. “Slight differences in amino acid sequence” are preferably caused by conservative amino acid substitutions.
  • the second aspect of the present invention provides a nucleic acid related to the mutant GO of the present invention. Namely, a gene encoding a mutant GO, a nucleic acid that can be used as a probe for identifying a nucleic acid encoding a mutant GO, and a nucleic acid that can be used as a primer for amplifying or mutating a nucleic acid encoding a mutant GO Is provided.
  • the gene encoding mutant GO is typically used for the preparation of mutant GO. According to a genetic engineering preparation method using a gene encoding a mutant GO, it is possible to obtain a mutant GO in a more homogeneous state. In addition, this method can be said to be a suitable method even when a large amount of mutant GO is prepared. In addition, the use of the gene encoding the mutant GO is not limited to the preparation of the mutant GO.
  • the nucleic acid can also be used as an experimental tool for elucidating the mechanism of action of mutant GO, or as a tool for designing or creating a further mutant of an enzyme.
  • the “gene encoding a mutant GO” refers to a nucleic acid from which the mutant GO is obtained when it is expressed, and of course a nucleic acid having a base sequence corresponding to the amino acid sequence of the mutant GO.
  • a nucleic acid obtained by adding a sequence that does not encode an amino acid sequence to such a nucleic acid is also included. Codon degeneracy is also considered.
  • SEQ ID NOs: 5 and 6 Examples of gene sequences encoding mutant GO are shown in SEQ ID NOs: 5 and 6.
  • the sequence of SEQ ID NO: 5 is a gene encoding a mutant GO in which the amino acid substitution of (1) above (substitution S444R for arginine) has been performed on GO of Aspergillus niger.
  • the sequence of SEQ ID NO: 6 was subjected to the above amino acid substitution (substitution S444R for arginine) and amino acid substitution (substitution for proline V582P) of (2) above to Aspergillus niger GO. It is a gene encoding mutant GO.
  • the nucleic acid of the present invention is isolated by using standard genetic engineering techniques, molecular biological techniques, biochemical techniques, etc. with reference to the sequence information disclosed in this specification or the attached sequence listing. Can be prepared.
  • a nucleic acid (hereinafter referred to as “the base sequence of a gene encoding the mutant GO of the present invention, which is equivalent in function to the protein encoded by the same but has a different base sequence”). Also referred to as “homologous nucleic acid.”
  • a base sequence defining a homologous nucleic acid is also referred to as “homologous base sequence”).
  • a homologous nucleic acid it consists of a base sequence containing one or more base substitutions, deletions, insertions, additions, or inversions based on the base sequence of the nucleic acid encoding the mutant GO of the present invention.
  • a DNA encoding a protein having a typical enzyme activity ie, GDH activity.
  • Base substitution or deletion may occur at a plurality of sites.
  • the term “plurality” as used herein refers to, for example, 2 to 40 bases, preferably 2 to 20 bases, more preferably 2 to 10 bases, although it depends on the position and type of amino acid residues in the three-dimensional structure of the protein encoded by the nucleic acid It is.
  • homologous nucleic acids include, for example, restriction enzyme treatment, treatment with exonuclease, DNA ligase, etc., site-directed mutagenesis (Molecular Cloning, Third Edition, Chapter 13, Cold Spring Harbor Laboratory Press, New York) It can be obtained by introducing mutations by mutation introduction methods (Molecular Cloning, Third Edition, Chapter 13, Cold Spring Harbor Laboratory Press, New York). Homologous nucleic acids can also be obtained by other methods such as ultraviolet irradiation.
  • Another aspect of the present invention relates to a nucleic acid having a base sequence complementary to the base sequence of the gene encoding the mutant GO of the present invention.
  • Still another embodiment of the present invention is at least about 60%, 70%, 80%, 90%, 95%, 99% of the base sequence of the gene encoding the mutant GO of the present invention or a base sequence complementary thereto. %, 99.9% nucleic acid having the same base sequence is provided.
  • Still another embodiment of the present invention relates to a nucleic acid having a base sequence that hybridizes under stringent conditions to a base sequence of a gene encoding the mutant GO of the present invention or a base sequence complementary to the base sequence homologous thereto.
  • the “stringent conditions” here are conditions under which so-called specific hybrids are formed and non-specific hybrids are not formed. Such stringent conditions are known to those skilled in the art, such as Molecular Cloning (Third Edition, Cold Spring Harbor Laboratory Press, New York) and Current protocols in molecular biology (edited by Frederick M. Ausubel et al., 1987) Can be set with reference to.
  • hybridization solution 50% formamide, 10 ⁇ SSC (0.15M NaCl, 15 mM sodium citrate, pH 7.0), 5 ⁇ Denhardt solution, 1% SDS, 10% dextran sulfate, 10 ⁇ g / ml denaturation
  • 5 ⁇ Denhardt solution 1% SDS
  • 10% dextran sulfate 10 ⁇ g / ml denaturation
  • incubation at about 42 ° C to about 50 ° C using salmon sperm DNA, 50 mM phosphate buffer (pH 7.5), followed by washing at about 65 ° C to about 70 ° C using 0.1 x SSC, 0.1% SDS can be mentioned.
  • Further preferable stringent conditions include, for example, 50% formamide, 5 ⁇ SSC (0.15M NaCl, 15 mM sodium citrate, pH 7.0), 1 ⁇ Denhardt solution, 1% SDS, 10% dextran sulfate, 10 ⁇ g / ml as a hybridization solution. Of denatured salmon sperm DNA, 50 mM phosphate buffer (pH 7.5)).
  • nucleic acid having a base sequence of a gene encoding the mutant GO of the present invention or a part of a base sequence complementary thereto.
  • a nucleic acid fragment can be used for detecting, identifying, and / or amplifying a nucleic acid having a base sequence of a gene encoding the mutant GO of the present invention.
  • the nucleic acid fragment is, for example, a nucleotide portion continuous in the base sequence of the gene encoding the mutant GO of the present invention (for example, about 10 to about 100 bases in length, preferably about 20 to about 100 bases in length, more preferably about 30 to about 100 in length).
  • Base length is designed to include at least a portion that hybridizes.
  • a nucleic acid fragment can be labeled.
  • fluorescent substances, enzymes, and radioisotopes can be used.
  • Still another aspect of the present invention relates to a recombinant DNA containing the gene of the present invention (a gene encoding a mutant GO).
  • the recombinant DNA of the present invention is provided, for example, in the form of a vector.
  • the term “vector” refers to a nucleic acid molecule capable of transporting a nucleic acid inserted therein into a target such as a cell.
  • An appropriate vector is selected according to the purpose of use (cloning, protein expression) and in consideration of the type of host cell.
  • Examples of vectors using insect cells as hosts include pAc and pVL, and examples of vectors using mammalian cells as hosts include pCDM8 and pMT2PC.
  • the vector of the present invention is preferably an expression vector.
  • “Expression vector” refers to a vector capable of introducing a nucleic acid inserted therein into a target cell (host cell) and allowing expression in the cell.
  • Expression vectors usually contain a promoter sequence necessary for the expression of the inserted nucleic acid, an enhancer sequence that promotes expression, and the like.
  • An expression vector containing a selectable marker can also be used. When such an expression vector is used, the presence / absence (and extent) of introduction of the expression vector can be confirmed using a selection marker.
  • Insertion of the nucleic acid of the present invention into a vector, insertion of a selectable marker gene (if necessary), insertion of a promoter (if necessary), etc. are performed using standard recombinant DNA techniques (for example, Molecular Cloning, Third Edition, 1.84, Cold Spring Harbor Laboratory Press and New York, which can be referred to, are known methods using restriction enzymes and DNA ligases).
  • the host cell is preferably a microorganism such as Escherichia coli (Escherichia coli) or budding yeast (Saccharomyces cerevisiae) from the viewpoint of ease of handling, but the recombinant DNA can be replicated and the mutant GO gene can be used. Any host cell capable of expression can be used.
  • E. coli include E. coli BL21 (DE3) pLysS when T7 promoter is used, and E. coli JM109 otherwise.
  • budding yeast include budding yeast SHY2, budding yeast AH22, or budding yeast INVSc1 (Invitrogen).
  • microorganism that is, a transformant
  • the microorganism of the present invention can be obtained by transfection or transformation using the vector of the present invention.
  • calcium chloride method Frnal of Molecular Biology (J. Mol. Biol.), Volume 53, pp. 159 (1970)
  • Hanahan Method Journal of Molecular Biology, Volume 166, 557) (1983)
  • SEM Gene, 96, 23 (1990)
  • Chung et al. Proceedings of the National Academy of Sciences of the USA, 86 Vol., P.
  • microorganism of the present invention is used for producing the mutant GO of the present invention. (See below for how to prepare mutant enzymes) Column).
  • the third aspect of the present invention relates to the use of mutant GO.
  • a glucose measurement method using a mutant GO is provided.
  • the amount of glucose in a sample is measured using an oxidation-reduction reaction by this enzyme.
  • the present invention is used, for example, for measurement of blood glucose level, measurement of glucose concentration in foods (such as seasonings and beverages), and the like.
  • the present invention also provides a glucose measuring reagent containing the present enzyme.
  • the reagent is used in the glucose measurement method of the present invention described above.
  • the present invention further provides a kit (glucose measurement kit) for carrying out the glucose measurement method of the present invention.
  • the kit of the present invention includes a reagent for measuring glucose containing the present enzyme, a reagent for reaction, a buffer solution, a glucose standard solution and the like as optional elements.
  • an instruction manual is usually attached to the glucose measurement kit of the present invention.
  • the mutant GO of the present invention is allowed to act on industrial products (various processed foods, confectionery, soft drinks, alcoholic beverages, foods such as dietary supplements, and cosmetics) or their raw materials.
  • industrial products various processed foods, confectionery, soft drinks, alcoholic beverages, foods such as dietary supplements, and cosmetics
  • the Maillard reaction can be suppressed by reducing the glucose content.
  • the enzyme agent of the present invention may contain excipients, buffers, suspension agents, stabilizers, preservatives, preservatives, physiological saline and the like in addition to the active ingredient (mutant GO).
  • starch dextrin, maltose, trehalose, lactose, D-glucose, sorbitol, D-mannitol, sucrose, glycerol and the like can be used.
  • Phosphate, citrate, acetate, etc. can be used as the buffer.
  • propylene glycol, ascorbic acid or the like can be used.
  • preservatives phenol, benzalkonium chloride, benzyl alcohol, chlorobutanol, methylparaben, and the like can be used.
  • the affinity for glucose when GO is converted to GDH is improved.
  • the enzyme to be mutated in the design method of the present invention is a microorganism-derived GO.
  • the enzyme to be mutated is typically a wild-type enzyme (an enzyme found in nature). However, this does not preclude that an enzyme that has already undergone some mutation or modification is used as the enzyme to be mutated.
  • microorganism-derived GO are Aspergillus niger GO and Penicillium amagasakiens GO.
  • the amino acid sequence (one example) of the enzyme exemplified here is shown below. In a preferred embodiment, an enzyme consisting of any one of these amino acid sequences is an enzyme to be mutated.
  • GO of Aspergillus niger amino acid sequence of SEQ ID NO: 1
  • Penicillium amagasakiense amino acid sequence of SEQ ID NO: 2
  • Aspergillus niger GO For Aspergillus niger GO, several sequences are known in addition to the above sequence (SEQ ID NO: 1). 6 to 9 show alignment comparisons of amino acid sequences of various Aspergillus niger-derived GOs.
  • step (i) in addition to the amino acid of (1) above, the following amino acid of (2) is specified.
  • the amino acid (2) above is important for GDH activity of GO.
  • a GDHase having high affinity for glucose is obtained by substituting the amino acid of (2) in addition to the amino acid of (1).
  • step (ii) is performed after step (i).
  • the type of amino acid after substitution is not particularly limited.
  • the amino acid (1) is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine or isoleucine.
  • Arginine, glutamic acid or glutamine is preferable, and arginine is particularly preferable.
  • the amino acid (2) the amino acid after substitution is, for example, glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid. Preferred is cysteine or proline, and particularly preferred is proline.
  • a further aspect of the present invention relates to a method for preparing a mutant enzyme.
  • a mutant GO successfully obtained by the present inventors is prepared by a genetic engineering technique.
  • a nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4 is prepared (Step (I)).
  • the “nucleic acid encoding a specific amino acid sequence” is a nucleic acid from which a polypeptide having the amino acid sequence is obtained when it is expressed, not to mention a nucleic acid comprising a base sequence corresponding to the amino acid sequence.
  • nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4" refers to the sequence information disclosed in this specification or the attached sequence listing, and uses standard genetic engineering techniques, molecular biological techniques, biochemical By using a technique or the like, it can be prepared in an isolated state.
  • all of the amino acid sequences of SEQ ID NO: 3 or 4 are obtained by mutating the amino acid sequence of Aspergillus niger-derived GO.
  • a nucleic acid (gene) encoding the amino acid sequence of SEQ ID NO: 3 or 4 can also be obtained by adding a necessary mutation to the gene encoding Aspergillus niger-derived GO (SEQ ID NO: 7).
  • Many methods for position-specific base sequence substitution are known in the art (see, for example, Molecular Cloning, Third Edition, Cold Spring Harbor Laboratory Press, New York), and an appropriate method is selected from them. Can be used.
  • a position-specific mutation introducing method a position-specific amino acid saturation mutation method can be employed.
  • the position-specific amino acid saturation mutation method is a “Semi-rational, semi-random” technique in which amino acid saturation mutation is introduced by estimating the position where the desired function is involved based on the three-dimensional structure of the protein (J. Mol. Biol. 331, 585-592 (2003)).
  • a site-specific amino acid saturation mutation can be introduced by using a kit such as Quick change (Stratagene) and overlap extention PCR (Nucleic Acid Res. 16,7351-7367 (1988)).
  • a DNA polymerase used for PCR Taq polymerase or the like can be used.
  • it is preferable to use a highly accurate DNA polymerase such as KOD-PLUS- (Toyobo), Pfu turbo (Stratagene).
  • a mutant enzyme is prepared based on the amino acid sequence designed by the design method of the present invention.
  • a nucleic acid encoding an amino acid sequence constructed by the designing method of the present invention is prepared.
  • a necessary mutation that is, substitution of an amino acid at a specific position in a protein as an expression product
  • a nucleic acid (gene) encoding the mutant enzyme is obtained.
  • step (II) the prepared nucleic acid is expressed (step (II)).
  • an expression vector into which the nucleic acid is inserted is prepared, and a host cell is transformed using the expression vector.
  • “Expression vector” refers to a vector capable of introducing a nucleic acid inserted therein into a target cell (host cell) and allowing expression in the cell.
  • Expression vectors usually contain a promoter sequence necessary for the expression of the inserted nucleic acid, an enhancer sequence that promotes expression, and the like.
  • An expression vector containing a selectable marker can also be used. When such an expression vector is used, the presence / absence (and extent) of introduction of the expression vector can be confirmed using a selection marker.
  • the transformant is cultured under conditions where a mutant enzyme as an expression product is produced.
  • the transformant may be cultured according to a conventional method.
  • the carbon source used in the medium may be any assimitable carbon compound.
  • glucose, sucrose, lactose, maltose, molasses, pyruvic acid and the like are used.
  • the nitrogen source may be any nitrogen compound that can be used.
  • peptone, meat extract, yeast extract, casein hydrolyzate, soybean cake alkaline extract, and the like are used.
  • phosphates, carbonates, sulfates, salts such as magnesium, calcium, potassium, iron, manganese, and zinc, specific amino acids, specific vitamins, and the like are used as necessary.
  • the culture temperature can be set in consideration of the growth characteristics of the transformant to be cultured and the production characteristics of the mutant enzyme. Preferably, it can be set within the range of 30 ° C. to 40 ° C. (more preferably around 37 ° C.).
  • the culture time can be set in consideration of the growth characteristics of the transformant to be cultured and the production characteristics of the mutant enzyme.
  • the pH of the medium is adjusted so that the transformant grows and the enzyme is produced.
  • the pH of the medium is about 6.0 to 9.0 (preferably around pH 7.0).
  • the expression product (mutant enzyme) is recovered (step (III)).
  • the culture solution containing the cultured microbial cells can be used as it is or after concentration, removal of impurities, etc., it can be used as an enzyme solution.
  • the expression product is once recovered from the culture solution or microbial cells. If the expression product is a secreted protein, it can be recovered from the culture solution, and if not, it can be recovered from the fungus body.
  • the culture supernatant is filtered and centrifuged to remove insoluble matters, followed by concentration under reduced pressure, membrane concentration, salting out using ammonium sulfate or sodium sulfate, methanol, ethanol, acetone, etc.
  • chromatographic methods such as fractional precipitation, dialysis, heat treatment, isoelectric point treatment, gel filtration, adsorption chromatography, ion exchange chromatography, affinity chromatography (eg, Sephadex gel (GE Healthcare Bioscience)) Separation using a combination of gel filtration, DEAE Sepharose CL-6B (GE Healthcare Bioscience), Octyl Sepharose CL-6B (GE Healthcare Bioscience), CM Sepharose CL-6B (GE Healthcare Bioscience) Purify and obtain the purified product of mutant enzyme Door can be.
  • DEAE Sepharose CL-6B GE Healthcare Bioscience
  • Octyl Sepharose CL-6B GE Healthcare Bioscience
  • CM Sepharose CL-6B GE Healthcare Bioscience
  • the microbial cells are collected by filtering, centrifuging, etc., and then the microbial cells are subjected to mechanical methods such as pressure treatment, ultrasonic treatment, or enzymatic methods such as lysozyme. After destruction by the method, a purified product of the mutant enzyme can be obtained by separation and purification in the same manner as described above.
  • the purified enzyme obtained as described above by pulverizing it by, for example, freeze drying, vacuum drying or spray drying.
  • the purified enzyme may be dissolved in a phosphate buffer, triethanolamine buffer, Tris-HCl buffer or GOOD buffer in advance.
  • a phosphate buffer or a triethanolamine buffer can be used.
  • PIPES, MES, or MOPS is mentioned as a GOOD buffer here.
  • cell-free synthesis system (cell-free transcription system, cell-free transcription / translation system) refers to a ribosome derived from a live cell (or obtained by a genetic engineering technique), not a live cell. This refers to the in vitro synthesis of mRNA and protein encoded by a template nucleic acid (DNA or mRNA) using transcription / translation factors.
  • a cell extract obtained by purifying a cell disruption solution as needed is generally used.
  • Cell extracts generally contain ribosomes necessary for protein synthesis, various factors such as initiation factors, and various enzymes such as tRNA.
  • ribosomes necessary for protein synthesis
  • various factors such as initiation factors
  • various enzymes such as tRNA.
  • other substances necessary for protein synthesis such as various amino acids, energy sources such as ATP and GTP, and creatine phosphate are added to the cell extract.
  • a ribosome, various factors, and / or various enzymes prepared separately may be supplemented as necessary during protein synthesis.
  • cell-free transcription / translation system is used interchangeably with a cell-free protein synthesis system, in-vitro translation system or in-vitro transcription / translation system.
  • RNA is used as a template to synthesize proteins.
  • total RNA, mRNA, in vitro transcript and the like are used.
  • the other in vitro transcription / translation system uses DNA as a template.
  • the template DNA should contain a ribosome binding region and preferably contain an appropriate terminator sequence.
  • conditions to which factors necessary for each reaction are added are set so that the transcription reaction and the translation reaction proceed continuously.
  • Genomic DNA was extracted from Aspergillus niger GO-1 (owned by Amano Enzyme) using Gen Elute Plant Genomic DNA kit (Sigma), and the GO gene was obtained by PCR. Mutated glucose oxidase designed to substitute multiple amino acids into S444 using the pYES-GO-KP-2 plasmid as a template by inserting the amplified product after PCR into pYES2. A plasmid with The transformed plasmid was transformed into Escherichia coli DH5 ⁇ , followed by plasmid extraction to prepare a mutation library.
  • the obtained library was transformed into Saccharomyces cerevisiae INVSc1 (Invitrogen), and the grown colonies were subjected to liquid culture to examine GO activity and GDH activity.
  • the expression in liquid culture was referred to the manual for pYES2.
  • Fig. 2 shows the measurement results for S444.
  • Substituted amino acids that increase GDH activity / GO activity are R, E, Q, L, M, T, W, C, V, and I.
  • substitution with R, E, or Q is effective for GDH, and substitution with R can be evaluated as being most preferable.
  • the measurement results for V582 are shown in FIG.
  • Substituted amino acids that increase GDH activity / GO activity are N, S, E, Q, P, C, and G. Of these, substitution with P is particularly effective for GDH.
  • Liquid culture of GOM2 and GOM6 transformants was performed, and DEAE-Sepharose purification and desalting concentration were performed to obtain a purified enzyme solution.
  • the Km value was calculated by measurement using the purified enzyme solution obtained.
  • the expression in liquid culture was referred to the manual for pYES2.
  • the Km value for glucose of GOM6 was 22.9 ⁇ 10 ⁇ 3 mol / L (FIG. 4), which was about 1/5 of the Km value of GOM2 (116 ⁇ 10 ⁇ 3 mol / L). That is, it was revealed that GOM6 has a much higher affinity for glucose than GOM2.
  • the Km value for glucose of Aspergillus niger-derived GO was 12.9 ⁇ 10 ⁇ 3 mol / L.
  • the substrate specificity of the multiple mutant was evaluated as follows. That is, 20 ⁇ L of the purified enzyme used in the substrate affinity confirmation experiment was added to 200 ⁇ L of each reagent and reacted at 37 ° C. Absorbance was measured at 5 and 10 minutes after the start of the reaction, and GDH activity was determined from the difference in absorbance. The GDH activity when each substrate was used was expressed as a ratio to the GDH activity (100%) when glucose was used as the substrate.
  • GDH assay reagent 50 mM PIPES-NaOH (cont.0.1% Triton X-100) pH 7.0 23 mL 1mol / L substrate 3mL 3mmol / L PMS 3mL 6.6mmol / L NTB 1mL
  • the results are shown in FIG.
  • the multiple mutant (GOM6) showed the same substrate specificity as the pre-mutation enzyme (GO derived from Aspergillus niger) and was confirmed to be highly practical.
  • the measurement results of GDH activity and GO activity of each multiple mutant are shown in FIG. It can be seen that the multiple mutants GOM7, GOM8, 1cf3M6 and 1pgeM6 are all highly GDH-ized.
  • the Km value of each multiple mutant is equal to or less than the Km value of GOM6, and shows high substrate affinity (FIG. 11).
  • Each multiple mutant is also excellent in substrate specificity (FIG. 12).
  • the mutant GO of the present invention is useful for detecting and quantifying the amount of glucose in a sample.
  • the affinity of the mutant GO of the present invention for glucose is high. Therefore, if the mutant GO of the present invention is used for a glucose sensor, improvement in measurement accuracy can be expected.

Abstract

 The purpose of the present invention is to provide a glucose dehydrogenase-converted enzyme having excellent affinity for glucose. Provided is a mutant enzyme comprising an amino acid sequence in which the amino acid corresponding to amino acid 444 of an amino acid sequence shown by SEQ ID NO: 1 has been substituted by another amino acid in the amino acid sequence of microbial glucose oxidase.

Description

変異酵素及びその用途Mutant enzyme and its use
 本発明は変異酵素及び酵素の改変法に関する。デヒドロゲナーゼ(脱水素酵素)化されたグルコースオキシダーゼ及びその調製法等が提供される。本出願は、2014年8月29日に出願された日本国特許出願第2014-176042号に基づく優先権、及び2014年11月18日に出願された日本国特許出願第2014-233291号に基づく優先権を主張するものであり、これらの特許出願の全内容は参照により援用される。 The present invention relates to a mutant enzyme and a method for modifying the enzyme. A dehydrogenase (dehydrogenase) glucose oxidase and a method for preparing the same are provided. This application is based on the priority based on Japanese Patent Application No. 2014-176042 filed on August 29, 2014, and on the basis of Japanese Patent Application No. 2014-233291 filed on November 18, 2014 Priority is claimed and the entire contents of these patent applications are incorporated by reference.
 電気化学的バイオセンサを用いた簡易型の自己血糖測定器が広く用いられている。当該バイオセンサにはグルコースを基質とする酵素であるグルコースオキシダーゼ(以下「GO」と略称する)やグルコースデヒドロゲナーゼ(以下「GDH」と略称する)が利用されている。GOはグルコースに対する特異性が高く、熱安定性に優れているという利点がある一方で、それを用いた測定においては測定サンプル中の溶存酸素の影響を受けやすく、溶存酸素が測定結果に影響を及ぼすといった問題点が指摘されている。 Simple self blood glucose measuring devices using electrochemical biosensors are widely used. The biosensor uses glucose oxidase (hereinafter abbreviated as “GO”) and glucose dehydrogenase (hereinafter abbreviated as “GDH”), which are enzymes using glucose as a substrate. While GO has the advantage of high specificity for glucose and excellent thermal stability, the measurement using it is easily affected by dissolved oxygen in the measurement sample, and dissolved oxygen affects the measurement results. The problem of being affected is pointed out.
 一方、溶存酸素の影響を受けず且つNAD(P)非存在下でグルコースに作用する酵素としてピロロキノリンキノン(PQQ)を補酵素とするGDH(以下、「PQQ-GDH」と略称する)が知られている(例えば特許文献1~3を参照)。しかしながらPQQ-GDHには、(1)PQQが酵素から解離しやすいこと、(2)グルコースに対する選択性が低いこと、及び(3)一般に膜画分に存在していることからその抽出・単離操作に困難を伴うことなどの問題がある。 On the other hand, GDH using pyrroloquinoline quinone (PQQ) as a coenzyme (hereinafter abbreviated as “PQQ-GDH”) is known as an enzyme that acts on glucose in the absence of NAD (P) without being affected by dissolved oxygen. (See, for example, Patent Documents 1 to 3). However, PQQ-GDH is extracted and isolated because (1) PQQ is easily dissociated from the enzyme, (2) its selectivity for glucose is low, and (3) it is generally present in the membrane fraction. There are problems such as difficulty in operation.
 PQQ-GDHの他、溶存酸素の影響を受けず且つNAD(P)非存在下でグルコースに作用する酵素としてフラビンアデニンジヌクレオチドを補酵素とするGDH(以下、「FAD-GDH」と略称する)が知られている。これまでに、アスペルギルス・オリゼ(非特許文献1~4、特許文献4)及びアスペルギルス・テレウス(特許文献5)からそれぞれFAD-GDHが取得されているが、これらのFAD-GDHはキシロースに対する反応性が比較的高いため、キシロース負荷試験を受けている者の血糖を測定する場合には、正確性の点で改善の余地がある。尚、実用性を高める等の目的の下、酵素の改変が精力的に試みられている。FAD-GDHの改変を報告する文献を以下に示す(特許文献6~14)。 In addition to PQQ-GDH, GDH uses flavin adenine dinucleotide as a coenzyme as an enzyme that is not affected by dissolved oxygen and acts on glucose in the absence of NAD (P) (hereinafter abbreviated as “FAD-GDH”) It has been known. So far, FAD-GDH has been obtained from Aspergillus oryzae (Non-Patent Documents 1 to 4, Patent Document 4) and Aspergillus tereus (Patent Document 5), respectively. These FAD-GDHs are reactive to xylose. Is relatively high, there is room for improvement in terms of accuracy when measuring blood sugar in those undergoing a xylose tolerance test. In addition, the modification | change of an enzyme is tried energetically for the purpose of improving practicality. Literatures that report modifications of FAD-GDH are shown below (Patent Literatures 6 to 14).
 一方、キシロースに対する作用性が比較的低い、ムコール属等に由来するFAD-GDHが報告されているが(特許文献15~20、非特許文献5)、実用性の点から依然として改善の余地がある。 On the other hand, FAD-GDH derived from the genus Mucor, which has a relatively low activity on xylose, has been reported (Patent Documents 15 to 20, Non-Patent Document 5), but there is still room for improvement in terms of practicality. .
特開2000-350588号公報JP 2000-350588 A 特開2001-197888号公報JP 2001-197888 A 特開2001-346587号公報Japanese Patent Laid-Open No. 2001-346587 国際公開第2007/139013号パンフレットInternational Publication No. 2007/139013 Pamphlet 国際公開第2004/058958号パンフレットInternational Publication No. 2004/058958 Pamphlet 特開2009-225801号公報JP 2009-225801 A 特開2009-225800号公報JP 2009-225800 A 特開2009-159964号公報JP 2009-159964 A 特開2008-237210号公報JP 2008-237210 A 国際公開第2009/084616号パンフレットInternational Publication No. 2009/084616 Pamphlet 国際公開第2010/053161号パンフレットInternational Publication No. 2010/053161 Pamphlet 特開2013-055917号公報JP 2013-055917 A 特開2011-152129号公報JP2011-152129A 特開2011-115156号公報JP 2011-115156 A 特許第4648993号公報Japanese Patent No. 4648993 特開2013-176364号公報JP 2013-176364 A 特開2013-176363号公報JP 2013-176363 A 特開2013-116102号公報JP 2013-116102 A 特開2013-081399号公報JP 2013-081399 A 特許第5435180号公報Japanese Patent No. 5435180 国際公開第2011/068050号パンフレットInternational Publication No. 2011/0668050 Pamphlet
 センサ用途の酵素には、センサの性能評価に重要な指標である「正確な測定値」を与えられることが求められる。測定値の正確さは、使用する酵素の基質特異性と基質親和性の両方に依存する。優れた基質特異性と基質親和性を有する酵素を利用できれば、正確な血糖値の測定が可能になり、酵素の使用量も低減できる。即ち、少量の酵素によって正確な測定が実現可能となる。そこで本発明は、血糖の測定等に利用されるバイオセンサ用の酵素として、基質親和性が向上した、実用性の高い変異酵素を提供することを課題とする。尚、最近、GOの構造を利用してFAD-GDHの立体構造解析を行い、414位グルタミン酸(E414)及び502位アルギニン(R502)が基質認識に重要であることが報告されるとともに(非特許文献6、7)、GOとFAD-GDHの長所を併せ持つ改変型GDH(特許文献21)が開発されたが、基質親和性の改善までには至っていなかった。 ∙ Enzymes for sensor applications are required to be given “accurate measurement values” which are important indicators for sensor performance evaluation. The accuracy of the measurement depends on both the substrate specificity and the substrate affinity of the enzyme used. If an enzyme having excellent substrate specificity and substrate affinity can be used, an accurate blood glucose level can be measured, and the amount of enzyme used can be reduced. That is, accurate measurement can be realized with a small amount of enzyme. Therefore, an object of the present invention is to provide a highly practical mutant enzyme having improved substrate affinity as an enzyme for a biosensor used for blood glucose measurement or the like. Recently, the structure of FAD-GDH was analyzed using the structure of GO, and it was reported that glutamic acid at position 414 (E414) and arginine at position 502 (R502) are important for substrate recognition (non-patented). References 6 and 7) and a modified GDH (Patent Document 21) having the advantages of GO and FAD-GDH have been developed, but the substrate affinity has not been improved.
 実用性の高いGDHを得るためのアプローチとしては大別して(1)既存のGDH(FAD-GDHやPQQ-GDH)を改変する方法と(2)微生物等をスクリーニングする方法の二つがある。これらのアプローチは既に多数の試みがあり(例えば上掲の特許文献6、7)、今後、より有効な酵素の創出に繋がる可能性は低い。この状況に鑑みて本発明者らの研究グループは、上掲の特許文献21で報告した通り、グルコースオキシダーゼ(GO)にはFAD-GDHが抱える上記問題点がないことに着目するとともに、GOとFAD-GDHはアミノ酸配列の相同性が比較的高いことに注目し、GOにGDH活性を付与すること、即ちGOをGDH化するという、新たなアプローチを採用した。その結果、GOをGDH化することに成功し、GDH活性の高い変異型GOを創出し、併せて、GOの変異に有効なアミノ酸位置を特定することにも成功した(特許文献21)。 There are two main approaches to obtaining highly practical GDH: (1) a method for modifying existing GDH (FAD-GDH or PQQ-GDH) and (2) a method for screening microorganisms. These approaches already have many attempts (for example, Patent Documents 6 and 7 listed above) and are unlikely to lead to the creation of more effective enzymes in the future. In view of this situation, the present inventors' research group noted that glucose oxidase (GO) does not have the above-mentioned problems of FAD-GDH, as reported in the above-mentioned Patent Document 21, and Focusing on the fact that FAD-GDH has a relatively high homology in amino acid sequence, a new approach was adopted in which GDH activity was imparted to GO, that is, GO was converted to GDH. As a result, GO was successfully converted to GDH, a mutant GO with high GDH activity was created, and at the same time, an amino acid position effective for GO mutation was also successfully identified (Patent Document 21).
 しかしながら、上記報告において取得できた酵素の基質親和性を検討したところ、変異前のGOよりも基質親和性が低下していた。この事実に鑑み、基質親和性を向上させることがセンサの性能の向上に重要であると考え、検討を進めることにした。鋭意検討の末、改善された基質親和性を有する変異酵素の取得に成功するとともに、基質特異性の向上に有効な変異位置の特定に成功した。 However, when the substrate affinity of the enzyme obtained in the above report was examined, the substrate affinity was lower than that of GO before mutation. In view of this fact, it was considered that improving the affinity of the substrate was important for improving the performance of the sensor, and the study was advanced. As a result of intensive studies, the inventors succeeded in obtaining a mutant enzyme having improved substrate affinity and succeeded in identifying a mutation position effective for improving substrate specificity.
 ところで、同種の酵素については構造(一次構造、立体構造)の類似性が高く、同様の変異が同様の効果を生む蓋然性が高いという技術常識に鑑みれば、後述の実施例に示したアスペルギルス・ニガーのGOとの間で実際に構造上の類似性が非常に高いペニシリウム・アマガサキエンス(Penicillium amagasakiense)のGOやその他の微生物由来GOについても、本発明者らが見出した変異手法を適用可能といえる。 By the way, in view of the common technical knowledge that the same kind of enzyme has a high structure (primary structure, three-dimensional structure) similarity, and the possibility that the same mutation produces the same effect, the Aspergillus niger shown in the examples described later. Mutation methods found by the present inventors can be applied to GO of Penicillium ガ amagasakiense and other microbially derived GO, which have a very high structural similarity with other GOs. I can say that.
 以下に示す発明は以上の成果及び考察に基づく。
 [1]微生物由来グルコースオキシダーゼのアミノ酸配列において、以下の(1)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列からなる変異酵素:
 (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸。
 [2]置換後のアミノ酸が、アルギニン、グルタミン酸、グルタミン、ロイシン、メチオニン、スレオニン、トリプトファン、システイン、バリン又はイソロイシンである、[1]に記載の変異酵素。
 [3]置換後のアミノ酸が、アルギニン、グルタミン酸又はグルタミンである、[1]に記載の変異酵素。
 [4]置換後のアミノ酸が、アルギニンである、[1]に記載の変異酵素。
 [5]微生物由来グルコースオキシダーゼのアミノ酸配列において、前記(1)のアミノ酸に加えて、以下の(2)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列からなる、[1]~[4]のいずれか一項に記載の変異酵素:
 (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸。
 [6]前記(2)のアミノ酸について、置換後のアミノ酸が、グリシン、システイン、プロリン、セリン、グルタミン、アスパラギン又はグルタミン酸である、[5]に記載の変異酵素。
 [7]微生物由来グルコースオキシダーゼのアミノ酸配列が配列番号1、2又は15のアミノ酸配列である、[1]~[6]のいずれか一項に記載の変異酵素。
 [8]配列番号3又は4のアミノ酸配列からなる、[1]に記載の変異酵素。
 [9][1]~[8]のいずれか一項に記載の変異酵素をコードする遺伝子。
 [10]配列番号5又は6の塩基配列を含む、[9]に記載の遺伝子。
 [11][9]又は[10]に記載の遺伝子を含む組換えDNA。
 [12][9]又は[10]に記載の遺伝子を含む組換えベクター。
 [13][11]に記載の組換えDNAを保有する微生物。
 [14][1]~[8]のいずれか一項に記載の変異酵素を用いて試料中のグルコースを測定することを特徴とする、グルコース測定法。
 [15][1]~[8]のいずれか一項に記載の変異酵素を含むことを特徴とするグルコース測定用試薬。
 [16][15]に記載のグルコース測定用試薬を含む、グルコース測定用キット。
 [17][1]~[8]のいずれか一項に記載の変異酵素を用いて工業製品又はその原料中のグルコース量を低下させることを特徴とする方法。
 [18][1]~[8]のいずれか一項に記載の変異酵素を含有する酵素剤。
 [19]以下のステップ(i)及び(ii)を含む、変異酵素の設計法:
 (i)微生物由来グルコースオキシダーゼである変異対象酵素のアミノ酸配列において、以下の(1)のアミノ酸を特定するステップ:
 (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸;
 (ii)変異対象酵素のアミノ酸配列を基にして、ステップ(i)で特定されたアミノ酸配列が他のアミノ酸に置換されたアミノ酸配列を構築するステップ。
 [20]ステップ(i)において、前記(1)のアミノ酸に加えて、以下の(2)のアミノ酸を特定する、[19]に記載の設計法:
 (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸。
 [21]微生物由来グルコースオキシダーゼが、アスペルギルス・ニガー又はペニシリウム・アマガサキエンスのグルコースオキシダーゼである、[19]又は[20]に記載の設計法。
 [22]グルコースオキシダーゼのアミノ酸配列が配列番号1又は2のアミノ酸配列である、[21]に記載の設計法。
 [23]以下のステップ(I)~(III)を含む、変異酵素の調製法:
 (I)配列番号3又は4のアミノ酸配列、又は[19]~[22]のいずれか一項に記載の設計法によって構築されたアミノ酸配列をコードする核酸を用意するステップ;
 (II)前記核酸を発現させるステップ、及び
 (III)発現産物を回収するステップ。
The following invention is based on the above results and considerations.
[1] Mutant enzyme comprising an amino acid sequence in which the amino acid of (1) below is substituted with another amino acid in the amino acid sequence of glucose oxidase derived from a microorganism:
(1) An amino acid corresponding to the 444th amino acid in the amino acid sequence shown in SEQ ID NO: 1.
[2] The mutant enzyme according to [1], wherein the amino acid after substitution is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine, or isoleucine.
[3] The mutant enzyme according to [1], wherein the amino acid after substitution is arginine, glutamic acid or glutamine.
[4] The mutant enzyme according to [1], wherein the amino acid after substitution is arginine.
[5] In the amino acid sequence of the glucose oxidase derived from microorganisms, in addition to the amino acid of (1), the amino acid sequence of (1) to [4] is composed of an amino acid sequence in which the amino acid of (2) below is substituted with another amino acid: The mutant enzyme according to any one of the above:
(2) An amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1.
[6] The mutant enzyme according to [5], wherein the amino acid after substitution for the amino acid of (2) is glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid.
[7] The mutant enzyme according to any one of [1] to [6], wherein the amino acid sequence of the microorganism-derived glucose oxidase is the amino acid sequence of SEQ ID NO: 1, 2, or 15.
[8] The mutant enzyme according to [1], comprising the amino acid sequence of SEQ ID NO: 3 or 4.
[9] A gene encoding the mutant enzyme according to any one of [1] to [8].
[10] The gene according to [9], comprising the nucleotide sequence of SEQ ID NO: 5 or 6.
[11] A recombinant DNA comprising the gene according to [9] or [10].
[12] A recombinant vector comprising the gene according to [9] or [10].
[13] A microorganism having the recombinant DNA according to [11].
[14] A glucose measuring method, wherein glucose in a sample is measured using the mutant enzyme according to any one of [1] to [8].
[15] A glucose measurement reagent comprising the mutant enzyme according to any one of [1] to [8].
[16] A glucose measurement kit comprising the glucose measurement reagent according to [15].
[17] A method comprising reducing the amount of glucose in an industrial product or a raw material thereof using the mutant enzyme according to any one of [1] to [8].
[18] An enzyme agent comprising the mutant enzyme according to any one of [1] to [8].
[19] A method for designing a mutant enzyme comprising the following steps (i) and (ii):
(i) A step of specifying the following amino acid (1) in the amino acid sequence of the enzyme to be mutated, which is a microorganism-derived glucose oxidase:
(1) an amino acid corresponding to the 444th amino acid of the amino acid sequence shown in SEQ ID NO: 1;
(ii) A step of constructing an amino acid sequence in which the amino acid sequence specified in step (i) is substituted with another amino acid based on the amino acid sequence of the enzyme to be mutated.
[20] The design method according to [19], wherein in step (i), the following amino acid (2) is specified in addition to the amino acid (1):
(2) An amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1.
[21] The design method according to [19] or [20], wherein the microorganism-derived glucose oxidase is glucose oxidase of Aspergillus niger or Penicillium amagasakiens.
[22] The design method according to [21], wherein the amino acid sequence of glucose oxidase is the amino acid sequence of SEQ ID NO: 1 or 2.
[23] A method for preparing a mutant enzyme comprising the following steps (I) to (III):
(I) a step of preparing a nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4, or the amino acid sequence constructed by the design method according to any one of [19] to [22];
(II) expressing the nucleic acid; and (III) recovering the expression product.
アスペルギルス・ニガー由来GOのアミノ酸配列とペニシリウム・アマガサキエンス由来GOのアミノ酸配列の比較。変異対象のアミノ酸を下線で示した。「*」は同一(identical)を表し、「:」は保存的置換(conserved substitutions)を表し、「.」は半保存的置換(semi-conserved substitutions)を表す。Comparison of the amino acid sequence of GO derived from Aspergillus niger and GO derived from Penicillium amagasakiens. The amino acids to be mutated are underlined. “*” Represents identity, “:” represents conserved substitutions, and “.” Represents semi-conserved substitutions. アスペルギルス・ニガー由来GOの444位アミノ酸(S444)に変異を導入した酵素のGDH活性とGO活性。GDH activity and GO activity of an enzyme introduced with a mutation at amino acid 444 (S444) of GO derived from Aspergillus niger. アスペルギルス・ニガー由来GOの582位アミノ酸(V582)に変異を導入した酵素のGDH活性とGO活性。GDH activity and GO activity of an enzyme introduced with a mutation at amino acid 582 (V582) of GO derived from Aspergillus niger. 多重変異酵素GOM6(S444R,V582P)のグルコースに対する親和性(Km値の測定結果)。Affinity to glucose of multiple mutant enzyme GOM6 (S444R, V582P) (measurement result of Km value). 多重変異酵素GOM6(S444R,V582P)の基質特異性。多重変異体GOM2(D446H,V582P)及び変異前の酵素(アスペルギルス・ニガー由来GO)と比較して示した。Substrate specificity of multiple mutant enzyme GOM6 (S444R, V582P). The results are shown in comparison with the multiple mutant GOM2 (D446H, V582P) and the enzyme before mutation (GO derived from Aspergillus niger). 各種アスペルギルス・ニガー由来GOのアミノ酸配列の比較。上から順にgi 110294440(ABG66642.1)(配列番号8)、gi 238801174(ACR56326.1)(配列番号9)、gi 470268262(AGI04246.1)(配列番号10)gi 55975635(AAV68194.1)(配列番号11)、gi 310687275(ADP03053.1)(配列番号12)、gi 393716500(AFN20671.1)(配列番号13)、gi 170676331(ACB30370.1)(配列番号14)、gi 121529(sp P13006.1、GOX_ASPNG)(配列番号15)、gi 13236685(AAF59929.2、AF234246_1)(配列番号16)、gi 656365428(AID16306.1)(配列番号17)、GO-1(配列番号1)。同一のアミノ酸を濃い網掛けで示した。配列間の同一性の高いことがわかる。Comparison of amino acid sequences of various Aspergillus niger derived GOs. Gi 110294440 (ABG66642.1) (SEQ ID NO: 8), gi 238801174 (ACR56326.1) (SEQ ID NO: 9), gi 470268262 (AGI04246.1) (SEQ ID NO: 10) gi 55975635 (AAV68194.1) (sequence) No. 11), gi 310687275 (ADP03053.1) (SEQ ID NO: 12), gi 393716500 (AFN20671.1) (SEQ ID NO: 13), gi 170676331 (ACB30370.1) (SEQ ID NO: 14), gi 121529 (sp P13006.1 , GOX_ASPNG) (SEQ ID NO: 15), gi 13236685 (AAF59929.2, AF234246_1) (SEQ ID NO: 16), gi 656365428 (AID16306.1) (SEQ ID NO: 17), GO-1 (SEQ ID NO: 1). The same amino acid is shown in dark shading. It can be seen that the identity between the sequences is high. 図6の続き。Continuation of FIG. 図7の続き。Continuation of FIG. 図8の続き。Continuation of FIG. 各種多重変異酵素のGDH活性とGO活性。アスペルギルス・ニガー由来GO(配列番号1)の多重変異酵素GOM6(S444R,V582P)、同多重変異酵素GOM7(S444Q,V582P)、同多重変異酵素GOM8(S444E,V582P)、別のアスペルギルス・ニガー由来GO(配列番号15)の多重変異酵素1cf3M6(S444R,V582P)、ペニシリウム・アマガサキエンス由来GO(配列番号2)の多重変異酵素1pgeM6(N444R,V582P)を比較した。GDH activity and GO activity of various mutated enzymes. Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO The multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared. 各種多重変異酵素のグルコースに対する親和性(Km値の測定結果)。アスペルギルス・ニガー由来GO(配列番号1)の多重変異酵素GOM6(S444R,V582P)、同多重変異酵素GOM7(S444Q,V582P)、同多重変異酵素GOM8(S444E,V582P)、別のアスペルギルス・ニガー由来GO(配列番号15)の多重変異酵素1cf3M6(S444R,V582P)、ペニシリウム・アマガサキエンス由来GO(配列番号2)の多重変異酵素1pgeM6(N444R,V582P)を比較した。Affinity of various multiple mutant enzymes for glucose (measurement result of Km value). Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO The multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared. 各種多重変異酵素の基質特異性。アスペルギルス・ニガー由来GO(配列番号1)の多重変異酵素GOM6(S444R,V582P)、同多重変異酵素GOM7(S444Q,V582P)、同多重変異酵素GOM8(S444E,V582P)、別のアスペルギルス・ニガー由来GO(配列番号15)の多重変異酵素1cf3M6(S444R,V582P)、ペニシリウム・アマガサキエンス由来GO(配列番号2)の多重変異酵素1pgeM6(N444R,V582P)を比較した。Substrate specificity of various mutated enzymes. Aspergillus niger-derived GO (SEQ ID NO: 1) multiple mutation enzyme GOM6 (S444R, V582P), multiple mutation enzyme GOM7 (S444Q, V582P), multiple mutation enzyme GOM8 (S444E, V582P), another Aspergillus niger-derived GO The multiple mutation enzyme 1cf3M6 (S444R, V582P) of (SEQ ID NO: 15) and the multiple mutation enzyme 1pgeM6 (N444R, V582P) of GO derived from Penicillium amagasakiens (SEQ ID NO: 2) were compared.
 説明の便宜上、本発明に関して使用する用語の一部について以下で定義する。
(用語)
 用語「変異酵素」とは、本明細書が開示する手法によって、「基になる酵素」を変異ないし改変して得られる酵素である。「変異酵素」、「変異型酵素」及び「改変型酵素」は置換可能に用いられる。基になる酵素は典型的には野生型酵素である。但し、既に人為的操作が施されている酵素を「基になる酵素」として本発明に適用することを妨げるものではない。尚、「基になる酵素」のことを本明細書では「変異対象酵素」又は「標的酵素」とも呼ぶ。
For convenience of explanation, some terms used in connection with the present invention are defined below.
(the term)
The term “mutant enzyme” is an enzyme obtained by mutating or modifying an “underlying enzyme” by the technique disclosed in this specification. “Mutant enzyme”, “mutant enzyme” and “modified enzyme” are used interchangeably. The underlying enzyme is typically a wild type enzyme. However, this does not preclude the application of an enzyme that has already been subjected to artificial manipulation to the present invention as a “base enzyme”. In this specification, the “base enzyme” is also referred to as “mutation target enzyme” or “target enzyme”.
 ある酵素(説明の便宜上A酵素と呼ぶ)を別の酵素(説明の便宜上B酵素と呼ぶ)に近似させること、即ちA酵素の一つ以上の特性をB酵素の対応する特性に近づけるように改変することを「A酵素をB酵素化する」と称する。ここでの「特性」の例は酵素活性(例えばA酵素がグルコースオキシダーゼの場合にはグルコースオキシダーゼ活性)、基質特異性、温度特性(至適温度、温度安定性など)、pH特性(至適pH、pH安定性)、補酵素特異性、メディエーターとの反応性である。 Modify one enzyme (referred to as A enzyme for convenience) to be similar to another enzyme (referred to as enzyme B for convenience), that is, to make one or more properties of enzyme A closer to the corresponding properties of enzyme B This is referred to as “converting enzyme A into enzyme B”. Examples of "characteristics" here are enzyme activity (eg glucose oxidase activity when enzyme A is glucose oxidase), substrate specificity, temperature characteristics (optimum temperature, temperature stability, etc.), pH characteristics (optimum pH) PH stability), coenzyme specificity, and reactivity with mediators.
(グルコースオキシダーゼを変異させた酵素)
 本発明の第1の局面は微生物由来のグルコースオキシダーゼ(GO)を変異させた酵素(以下「変異GO」とも呼ぶ)に関する。本発明の変異GOは、微生物由来のGO(変異対象酵素)のアミノ酸配列において、以下の(1)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列を有する。
 (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸
(Enzyme mutated glucose oxidase)
1st aspect of this invention is related with the enzyme (henceforth "mutant GO") which mutated glucose oxidase (GO) derived from microorganisms. The mutant GO of the present invention has an amino acid sequence in which the following amino acid (1) is substituted with another amino acid in the amino acid sequence of GO (mutation target enzyme) derived from a microorganism.
(1) Amino acid corresponding to the 444th amino acid of the amino acid sequence shown in SEQ ID NO: 1
 後述の実施例に示す通り、上記444位アミノ酸は、GOをグルコースデヒドロゲナーゼ化(GDH化)する際のグルコースに対する親和性に重要である。本発明では当該アミノ酸に相当するアミノ酸を変異させることによって、グルコースに対する親和性の向上を図る。 As shown in Examples described later, the amino acid at position 444 is important for the affinity for glucose when GO is converted to glucose dehydrogenase (GDH). In the present invention, the affinity for glucose is improved by mutating an amino acid corresponding to the amino acid.
 ここで、本明細書においてアミノ酸残基について使用する場合の用語「相当する」とは、比較されるタンパク質(酵素)間においてその機能の発揮に同等の貢献をしていることを意味する。例えば、基準のアミノ酸配列(即ち配列番号1のアミノ酸配列)に対して比較対象のアミノ酸配列を、一次構造(アミノ酸配列)の部分的な相同性を考慮しつつ、最適な比較ができるように並べたときに(このときに必要に応じてギャップを導入し、アライメントを最適化してもよい)、基準のアミノ酸配列中の特定のアミノ酸に対応する位置のアミノ酸を「相当するアミノ酸」として特定することができる。一次構造同士の比較に代えて、又はこれに加えて立体構造(三次元構造)同士の比較によって「相当するアミノ酸」を特定することもできる。立体構造情報を利用することによって信頼性の高い比較結果が得られる。この場合は、複数の酵素の立体構造の原子座標を比較しながらアライメントを行っていく手法を採用できる。変異対象酵素の立体構造情報は例えばProtein Data Bank(http://www.pdbj.org/index_j.html)より取得することができる。 Here, the term “corresponding” when used for amino acid residues in the present specification means that the protein (enzyme) to be compared makes an equivalent contribution to the performance of its function. For example, an amino acid sequence to be compared with a reference amino acid sequence (that is, the amino acid sequence of SEQ ID NO: 1) is arranged so that an optimal comparison can be made while considering partial homology of the primary structure (amino acid sequence). The amino acid at the position corresponding to a specific amino acid in the reference amino acid sequence is identified as a “corresponding amino acid”. Can do. Instead of, or in addition to, the comparison of primary structures, the “corresponding amino acid” can also be specified by comparing three-dimensional structures (three-dimensional structures). A highly reliable comparison result can be obtained by using the three-dimensional structure information. In this case, a method of performing alignment while comparing atomic coordinates of the three-dimensional structures of a plurality of enzymes can be employed. The three-dimensional structure information of the enzyme to be mutated can be obtained from, for example, Protein Data Bank (http://www.pdbj.org/index_j.html).
 X線結晶構造解析によるタンパク質立体構造の決定方法の一例を以下に示す。
(1)タンパク質を結晶化する。結晶化は、立体構造決定のためには欠かせないが、それ以外にも、タンパク質の高純度の精製法、高密度で安定な保存法として産業上の有用性もある。この場合、リガンドとして基質もしくはそのアナログ化合物を結合したタンパク質を結晶化すると良い。
(2)作製した結晶にX線を照射して回折データを収集する。なお、タンパク質結晶はX線照射によりダメージを受け回折能が劣化するケースが多々ある。その場合、結晶を急激に-173℃程度に冷却し、その状態で回折データを収集する低温測定技術が最近普及してきた。なお、最終的に、構造決定に利用する高分解能データを収集するために、輝度の高いシンクロトロン放射光が利用される。
(3)結晶構造解析を行うには、回折データに加えて、位相情報が必要になる。目的のタンパク質に対して、類縁のタンパク質の結晶構造が未知の場合、分子置換法で構造決定することは不可能であり、重原子同型置換法により位相問題が解決されなくてはならない。重原子同型置換法は、水銀や白金等原子番号が大きな金属原子を結晶に導入し、金属原子の大きなX線散乱能のX線回折データへの寄与を利用して位相情報を得る方法である。決定された位相は、結晶中の溶媒領域の電子密度を平滑化することにより改善することが可能である。溶媒領域の水分子は揺らぎが大きいために電子密度がほとんど観測されないので、この領域の電子密度を0に近似することにより、真の電子密度に近づくことができ、ひいては位相が改善されるのである。また、非対称単位に複数の分子が含まれている場合、これらの分子の電子密度を平均化することにより位相が更に大幅に改善される。このようにして改善された位相を用いて計算した電子密度図にタンパク質のモデルをフィットさせる。このプロセスは、コンピューターグラフィックス上で、MSI社(アメリカ)のQUANTA等のプログラムを用いて行われる。この後、MSI社のX-PLOR等のプログラムを用いて、構造精密化を行い、構造解析は完了する。目的のタンパク質に対して、類縁のタンパク質の結晶構造が既知の場合は、既知タンパク質の原子座標を用いて分子置換法により決定できる。分子置換と構造精密化はプログラム CNS_SOLVE ver.11などを用いて行うことができる。
An example of a method for determining a protein tertiary structure by X-ray crystal structure analysis is shown below.
(1) Crystallize the protein. Crystallization is indispensable for determining the three-dimensional structure, but it also has industrial utility as a high purity protein purification method and a high density and stable storage method. In this case, it is preferable to crystallize a protein bound with a substrate or an analog compound thereof as a ligand.
(2) Diffraction data is collected by irradiating the produced crystal with X-rays. In many cases, protein crystals are damaged by X-ray irradiation and the diffraction ability deteriorates. In that case, a cryogenic measurement technique in which the crystal is rapidly cooled to about −173 ° C. and diffraction data is collected in that state has recently become widespread. Finally, in order to collect high resolution data used for structure determination, synchrotron radiation having high luminance is used.
(3) In order to perform crystal structure analysis, phase information is required in addition to diffraction data. When the crystal structure of a protein related to the target protein is unknown, it is impossible to determine the structure by the molecular replacement method, and the phase problem must be solved by the heavy atom isomorphous replacement method. The heavy atom isomorphous substitution method is a method of obtaining phase information by introducing a metal atom having a large atomic number such as mercury or platinum into a crystal and utilizing the contribution of the metal atom to the X-ray diffraction data of the large X-ray scattering ability. . The determined phase can be improved by smoothing the electron density of the solvent region in the crystal. Since water molecules in the solvent region have large fluctuations, almost no electron density is observed, so by approximating the electron density in this region to 0, it is possible to approach the true electron density and thus the phase is improved. . Further, when a plurality of molecules are contained in the asymmetric unit, the phase is further improved by averaging the electron density of these molecules. The protein model is fit to the electron density map calculated using the improved phase in this way. This process is performed on a computer graphic using a program such as QUANTA from MSI (USA). Thereafter, the structure is refined using a program such as X-PLOR of MSI, and the structural analysis is completed. When the crystal structure of a similar protein is known with respect to the target protein, it can be determined by a molecular replacement method using the atomic coordinates of the known protein. Molecular replacement and structural refinement can be performed using programs such as CNS_SOLVE ver.11.
 変異対象酵素である微生物由来GOの例はアスペルギルス・ニガー由来GO及びペニシリウム・アマガサキエンス由来GOである。アスペルギルス・ニガー由来GOのアミノ酸配列及びペニシリウム・アマガサキエンス由来GOのアミノ酸配列をそれぞれ配列番号1及び配列番号2に示す。また、これら二つのアミノ酸配列のアライメント比較を図1に示す。 Examples of GO derived from microorganisms that are enzymes to be mutated are GO derived from Aspergillus niger and GO derived from Penicillium amagasakiens. The amino acid sequence of GO derived from Aspergillus niger and the amino acid sequence of GO derived from Penicillium amagasakiens are shown in SEQ ID NO: 1 and SEQ ID NO: 2, respectively. In addition, an alignment comparison of these two amino acid sequences is shown in FIG.
 配列番号1のアミノ酸配列を有するアスペルギルス・ニガー由来GOを変異対象酵素としたとき、上記(1)のアミノ酸は配列番号1の444位アミノ酸となる。一方、配列番号2のアミノ酸配列を有するペニシリウム・アマガサキエンス由来GOを変異対象酵素としたとき、上記(1)のアミノ酸は配列番号2の444位アミノ酸となる。 When Aspergillus niger-derived GO having the amino acid sequence of SEQ ID NO: 1 is used as the mutation target enzyme, the amino acid of the above (1) is the 444th amino acid of SEQ ID NO: 1. On the other hand, when Penicillium amagasakiens-derived GO having the amino acid sequence of SEQ ID NO: 2 is used as the enzyme to be mutated, the amino acid of the above (1) is the 444th amino acid of SEQ ID NO: 2.
 好ましくは、上記(1)のアミノ酸に加え、以下の(2)のアミノ酸も置換されている。即ち、本発明の好ましい態様として、二つのアミノ酸が置換された変異GOが提供される。
 (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸
Preferably, in addition to the above amino acid (1), the following amino acid (2) is also substituted. That is, as a preferred embodiment of the present invention, a mutant GO in which two amino acids are substituted is provided.
(2) Amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1
 上記(2)のアミノ酸はGOのGDH活性に重要である。本発明では、上記(1)のアミノ酸に加えて上記(2)のアミノ酸も置換することにより、グルコースに対する親和性の高い、GDH化酵素を得る。 The amino acid (2) above is important for GDH activity of GO. In the present invention, a GDHase having high affinity for glucose is obtained by substituting the amino acid of (2) in addition to the amino acid of (1).
 置換後のアミノ酸の種類は特に限定されるものではない。置換後のアミノ酸の例を挙げると、(1)のアミノ酸については、アルギニン、グルタミン酸、グルタミン、ロイシン、メチオニン、スレオニン、トリプトファン、システイン、バリン又はイソロイシンである。好ましくは、アルギニン、グルタミン酸又はグルタミンであり、特に好ましくはアルギニンである。一方、(2)のアミノ酸については、置換後のアミノ酸は例えばグリシン、システイン、プロリン、セリン、グルタミン、アスパラギン又はグルタミン酸である。好ましくは、システイン又はプロリンであり、特に好ましくはプロリンである。 The type of amino acid after substitution is not particularly limited. As examples of the amino acid after substitution, the amino acid (1) is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine or isoleucine. Arginine, glutamic acid or glutamine is preferable, and arginine is particularly preferable. On the other hand, for the amino acid (2), the amino acid after substitution is, for example, glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid. Preferred is cysteine or proline, and particularly preferred is proline.
 本発明の変異酵素の具体例として、配列番号3のアミノ酸配列を有する酵素と、配列番号4のアミノ酸配列を有する酵素を挙げることができる。前者は、アスペルギルス・ニガー由来GOについて上記(1)のアミノ酸がアルギニンに置換された酵素であり、後者はアスペルギルス・ニガー由来GOについて上記(1)のアミノ酸がアルギニンに置換されるとともに、上記(2)のアミノ酸がプロリンに置換された酵素である。 Specific examples of the mutant enzyme of the present invention include an enzyme having the amino acid sequence of SEQ ID NO: 3 and an enzyme having the amino acid sequence of SEQ ID NO: 4. The former is an enzyme in which the amino acid of (1) above is substituted with arginine for Aspergillus niger-derived GO, and the latter is an enzyme in which the amino acid of (1) above is substituted with arginine for Aspergillus niger-derived GO. ) Is an enzyme in which the amino acid is replaced with proline.
 ところで、一般に、あるタンパク質のアミノ酸配列の一部を変異させた場合において変異後のタンパク質が変異前のタンパク質と同等の機能を有することがある。即ちアミノ酸配列の変異がタンパク質の機能に対して実質的な影響を与えず、タンパク質の機能が変異前後において維持されることがある。この技術常識を考慮すれば、上記(1)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列からなる変異GO、或いは上記(1)及び(2)のアミノ酸がそれぞれ他のアミノ酸に置換されたアミノ酸配列からなる変異GOと比較した場合に、アミノ酸配列の僅かな相違が認められるものの(但し、アミノ酸配列の相違は上記アミノ酸置換が施された位置以外の位置で生ずることとする)、特性に実質的な差が認められないものは、上記変異GOと実質同一の酵素とみなすことができる。ここでの「アミノ酸配列の僅かな相違」とは、典型的には、アミノ酸配列を構成する1~数個(上限は例えば3個、5個、7個、10個)のアミノ酸の欠失、置換、若しくは1~数個(上限は例えば3個、5個、7個、10個)のアミノ酸の付加、挿入、又はこれらの組合せによりアミノ酸配列に変異(変化)が生じていることをいう。「実質同一の酵素」のアミノ酸配列と、基準となる上記変異GOのアミノ酸配列との同一性(%)は、好ましくは90%以上であり、更に好ましくは95%以上であり、更に更に好ましくは98%以上であり、最も好ましくは99%以上である。尚、アミノ酸配列の相違は複数の位置で生じていてもよい。「アミノ酸配列の僅かな相違」は、好ましくは保存的アミノ酸置換により生じている。 By the way, in general, when a part of the amino acid sequence of a certain protein is mutated, the protein after the mutation may have the same function as the protein before the mutation. That is, the amino acid sequence mutation does not substantially affect the protein function, and the protein function may be maintained before and after the mutation. In consideration of this common general knowledge, a mutant GO consisting of an amino acid sequence in which the amino acid in (1) above is replaced with another amino acid, or an amino acid in which the amino acids in (1) and (2) above are each replaced with another amino acid. A slight difference in the amino acid sequence is observed when compared with the mutant GO consisting of the sequence (however, the difference in the amino acid sequence occurs at a position other than the position where the amino acid substitution is performed), but the characteristics are substantially Those in which no difference is observed can be regarded as substantially the same enzyme as the mutant GO. “Slight difference in amino acid sequence” as used herein typically means deletion of one to several amino acids (upper limit is 3, 5, 7, 10) constituting an amino acid sequence, It means that a mutation (change) has occurred in the amino acid sequence by substitution or addition, insertion, or a combination of 1 to several amino acids (the upper limit is 3, 5, 7, 10). The identity (%) between the amino acid sequence of “substantially identical enzyme” and the amino acid sequence of the above-mentioned mutant GO as a reference is preferably 90% or more, more preferably 95% or more, and still more preferably 98% or more, and most preferably 99% or more. The difference in amino acid sequence may occur at a plurality of positions. “Slight differences in amino acid sequence” are preferably caused by conservative amino acid substitutions.
(変異GOをコードする核酸等)
 本発明の第2の局面は本発明の変異GOに関連する核酸を提供する。即ち、変異GOをコードする遺伝子、変異GOをコードする核酸を同定するためのプローブとして用いることができる核酸、変異GOをコードする核酸を増幅又は突然変異等させるためのプライマーとして用いることができる核酸が提供される。
(Nucleic acid encoding mutant GO)
The second aspect of the present invention provides a nucleic acid related to the mutant GO of the present invention. Namely, a gene encoding a mutant GO, a nucleic acid that can be used as a probe for identifying a nucleic acid encoding a mutant GO, and a nucleic acid that can be used as a primer for amplifying or mutating a nucleic acid encoding a mutant GO Is provided.
 変異GOをコードする遺伝子は典型的には変異GOの調製に利用される。変異GOをコードする遺伝子を用いた遺伝子工学的調製法によれば、より均質な状態の変異GOを得ることが可能である。また、当該方法は大量の変異GOを調製する場合にも好適な方法といえる。尚、変異GOをコードする遺伝子の用途は変異GOの調製に限られない。例えば、変異GOの作用機構の解明などを目的とした実験用のツールとして、或いは酵素の更なる変異体をデザイン又は作製するためのツールとして、当該核酸を利用することもできる。 The gene encoding mutant GO is typically used for the preparation of mutant GO. According to a genetic engineering preparation method using a gene encoding a mutant GO, it is possible to obtain a mutant GO in a more homogeneous state. In addition, this method can be said to be a suitable method even when a large amount of mutant GO is prepared. In addition, the use of the gene encoding the mutant GO is not limited to the preparation of the mutant GO. For example, the nucleic acid can also be used as an experimental tool for elucidating the mechanism of action of mutant GO, or as a tool for designing or creating a further mutant of an enzyme.
 本明細書において「変異GOをコードする遺伝子」とは、それを発現させた場合に当該変異GOが得られる核酸のことをいい、当該変異GOのアミノ酸配列に対応する塩基配列を有する核酸は勿論のこと、そのような核酸にアミノ酸配列をコードしない配列が付加されてなる核酸をも含む。また、コドンの縮重も考慮される。 In the present specification, the “gene encoding a mutant GO” refers to a nucleic acid from which the mutant GO is obtained when it is expressed, and of course a nucleic acid having a base sequence corresponding to the amino acid sequence of the mutant GO. In addition, a nucleic acid obtained by adding a sequence that does not encode an amino acid sequence to such a nucleic acid is also included. Codon degeneracy is also considered.
 変異GOをコードする遺伝子の配列の例を配列番号5及び6に示す。配列番号5の配列はアスペルギルス・ニガーのGOに上記(1)のアミノ酸の置換(アルギニンへの置換S444R)が施された変異GOをコードする遺伝子である。同様に、配列番号6の配列はアスペルギルス・ニガーのGOに上記(1)のアミノ酸の置換(アルギニンへの置換S444R)と上記(2)のアミノ酸の置換(プロリンへの置換V582P)が施された変異GOをコードする遺伝子である。 Examples of gene sequences encoding mutant GO are shown in SEQ ID NOs: 5 and 6. The sequence of SEQ ID NO: 5 is a gene encoding a mutant GO in which the amino acid substitution of (1) above (substitution S444R for arginine) has been performed on GO of Aspergillus niger. Similarly, the sequence of SEQ ID NO: 6 was subjected to the above amino acid substitution (substitution S444R for arginine) and amino acid substitution (substitution for proline V582P) of (2) above to Aspergillus niger GO. It is a gene encoding mutant GO.
 本発明の核酸は、本明細書又は添付の配列表が開示する配列情報を参考にし、標準的な遺伝子工学的手法、分子生物学的手法、生化学的手法などを用いることによって、単離された状態に調製することができる。 The nucleic acid of the present invention is isolated by using standard genetic engineering techniques, molecular biological techniques, biochemical techniques, etc. with reference to the sequence information disclosed in this specification or the attached sequence listing. Can be prepared.
 本発明の他の態様では、本発明の変異GOをコードする遺伝子の塩基配列と比較した場合にそれがコードするタンパク質の機能は同等であるものの一部において塩基配列が相違する核酸(以下、「相同核酸」ともいう。また、相同核酸を規定する塩基配列を「相同塩基配列」ともいう)が提供される。相同核酸の例として、本発明の変異GOをコードする核酸の塩基配列を基準として1若しくは複数の塩基の置換、欠失、挿入、付加、又は逆位を含む塩基配列からなり、変異GOに特徴的な酵素活性(即ちGDH活性)を有するタンパク質をコードするDNAを挙げることができる。塩基の置換や欠失などは複数の部位に生じていてもよい。ここでの「複数」とは、当該核酸がコードするタンパク質の立体構造におけるアミノ酸残基の位置や種類によっても異なるが例えば2~40塩基、好ましくは2~20塩基、より好ましくは2~10塩基である。 In another embodiment of the present invention, a nucleic acid (hereinafter referred to as “the base sequence of a gene encoding the mutant GO of the present invention, which is equivalent in function to the protein encoded by the same but has a different base sequence”). Also referred to as “homologous nucleic acid.” In addition, a base sequence defining a homologous nucleic acid is also referred to as “homologous base sequence”). As an example of a homologous nucleic acid, it consists of a base sequence containing one or more base substitutions, deletions, insertions, additions, or inversions based on the base sequence of the nucleic acid encoding the mutant GO of the present invention. And a DNA encoding a protein having a typical enzyme activity (ie, GDH activity). Base substitution or deletion may occur at a plurality of sites. The term “plurality” as used herein refers to, for example, 2 to 40 bases, preferably 2 to 20 bases, more preferably 2 to 10 bases, although it depends on the position and type of amino acid residues in the three-dimensional structure of the protein encoded by the nucleic acid It is.
 以上のような相同核酸は例えば、制限酵素処理、エキソヌクレアーゼやDNAリガーゼ等による処理、位置指定突然変異導入法(Molecular Cloning, Third Edition, Chapter 13 ,Cold Spring Harbor Laboratory Press, New York)やランダム突然変異導入法(Molecular Cloning, Third Edition, Chapter 13 ,Cold Spring Harbor Laboratory Press, New York)による変異の導入などによって得られる。また、紫外線照射など他の方法によっても相同核酸を得ることができる。 Such homologous nucleic acids include, for example, restriction enzyme treatment, treatment with exonuclease, DNA ligase, etc., site-directed mutagenesis (Molecular Cloning, Third Edition, Chapter 13, Cold Spring Harbor Laboratory Press, New York) It can be obtained by introducing mutations by mutation introduction methods (Molecular Cloning, Third Edition, Chapter 13, Cold Spring Harbor Laboratory Press, New York). Homologous nucleic acids can also be obtained by other methods such as ultraviolet irradiation.
 本発明の他の態様は、本発明の変異GOをコードする遺伝子の塩基配列に対して相補的な塩基配列を有する核酸に関する。本発明の更に他の態様は、本発明の変異GOをコードする遺伝子の塩基配列、或いはそれに相補的な塩基配列に対して少なくとも約60%、70%、80%、90%、95%、99%、99.9%同一な塩基配列を有する核酸を提供する。 Another aspect of the present invention relates to a nucleic acid having a base sequence complementary to the base sequence of the gene encoding the mutant GO of the present invention. Still another embodiment of the present invention is at least about 60%, 70%, 80%, 90%, 95%, 99% of the base sequence of the gene encoding the mutant GO of the present invention or a base sequence complementary thereto. %, 99.9% nucleic acid having the same base sequence is provided.
 本発明の更に別の態様は、本発明の変異GOをコードする遺伝子の塩基配列又はその相同塩基配列に相補的な塩基配列に対してストリンジェントな条件下でハイブリダイズする塩基配列を有する核酸に関する。ここでの「ストリンジェントな条件」とは、いわゆる特異的なハイブリッドが形成され、非特異的なハイブリッドが形成されない条件をいう。このようなストリンジェントな条件は当業者に公知であって例えばMolecular Cloning(Third Edition, Cold Spring Harbor Laboratory Press, New York)やCurrent protocols in molecular biology(edited by Frederick M. Ausubel et al., 1987)を参照して設定することができる。ストリンジェントな条件として例えば、ハイブリダイゼーション液(50%ホルムアミド、10×SSC(0.15M NaCl, 15mM sodium citrate, pH 7.0)、5×Denhardt溶液、1% SDS、10% デキストラン硫酸、10μg/mlの変性サケ精子DNA、50mMリン酸バッファー(pH7.5))を用いて約42℃~約50℃でインキュベーションし、その後0.1×SSC、0.1% SDSを用いて約65℃~約70℃で洗浄する条件を挙げることができる。更に好ましいストリンジェントな条件として例えば、ハイブリダイゼーション液として50%ホルムアミド、5×SSC(0.15M NaCl, 15mM sodium citrate, pH 7.0)、1×Denhardt溶液、1%SDS、10%デキストラン硫酸、10μg/mlの変性サケ精子DNA、50mMリン酸バッファー(pH7.5))を用いる条件を挙げることができる。 Still another embodiment of the present invention relates to a nucleic acid having a base sequence that hybridizes under stringent conditions to a base sequence of a gene encoding the mutant GO of the present invention or a base sequence complementary to the base sequence homologous thereto. . The “stringent conditions” here are conditions under which so-called specific hybrids are formed and non-specific hybrids are not formed. Such stringent conditions are known to those skilled in the art, such as Molecular Cloning (Third Edition, Cold Spring Harbor Laboratory Press, New York) and Current protocols in molecular biology (edited by Frederick M. Ausubel et al., 1987) Can be set with reference to. As stringent conditions, for example, hybridization solution (50% formamide, 10 × SSC (0.15M NaCl, 15 mM sodium citrate, pH 7.0), 5 × Denhardt solution, 1% SDS, 10% dextran sulfate, 10 μg / ml denaturation Conditions of incubation at about 42 ° C to about 50 ° C using salmon sperm DNA, 50 mM phosphate buffer (pH 7.5), followed by washing at about 65 ° C to about 70 ° C using 0.1 x SSC, 0.1% SDS Can be mentioned. Further preferable stringent conditions include, for example, 50% formamide, 5 × SSC (0.15M NaCl, 15 mM sodium citrate, pH 7.0), 1 × Denhardt solution, 1% SDS, 10% dextran sulfate, 10 μg / ml as a hybridization solution. Of denatured salmon sperm DNA, 50 mM phosphate buffer (pH 7.5)).
 本発明の更に他の態様は、本発明の変異GOをコードする遺伝子の塩基配列、或いはそれに相補的な塩基配列の一部を有する核酸(核酸断片)を提供する。このような核酸断片は、本発明の変異GOをコードする遺伝子の塩基配列を有する核酸などを検出、同定、及び/又は増幅することなどに用いることができる。核酸断片は例えば、本発明の変異GOをコードする遺伝子の塩基配列において連続するヌクレオチド部分(例えば約10~約100塩基長、好ましくは約20~約100塩基長、更に好ましくは約30~約100塩基長)にハイブリダイズする部分を少なくとも含むように設計される。プローブとして利用される場合には核酸断片を標識化することができる。標識化には例えば、蛍光物質、酵素、放射性同位元素を用いることができる。 Still another embodiment of the present invention provides a nucleic acid (nucleic acid fragment) having a base sequence of a gene encoding the mutant GO of the present invention or a part of a base sequence complementary thereto. Such a nucleic acid fragment can be used for detecting, identifying, and / or amplifying a nucleic acid having a base sequence of a gene encoding the mutant GO of the present invention. The nucleic acid fragment is, for example, a nucleotide portion continuous in the base sequence of the gene encoding the mutant GO of the present invention (for example, about 10 to about 100 bases in length, preferably about 20 to about 100 bases in length, more preferably about 30 to about 100 in length). (Base length) is designed to include at least a portion that hybridizes. When used as a probe, a nucleic acid fragment can be labeled. For labeling, for example, fluorescent substances, enzymes, and radioisotopes can be used.
 本発明のさらに他の局面は、本発明の遺伝子(変異GOをコードする遺伝子)を含む組換えDNAに関する。本発明の組換えDNAは例えばベクターの形態で提供される。本明細書において用語「ベクター」は、それに挿入された核酸を細胞等のターゲット内へと輸送することができる核酸性分子をいう。 Still another aspect of the present invention relates to a recombinant DNA containing the gene of the present invention (a gene encoding a mutant GO). The recombinant DNA of the present invention is provided, for example, in the form of a vector. As used herein, the term “vector” refers to a nucleic acid molecule capable of transporting a nucleic acid inserted therein into a target such as a cell.
 使用目的(クローニング、タンパク質の発現)に応じて、また宿主細胞の種類を考慮して適当なベクターが選択される。大腸菌を宿主とするベクターとしてはM13ファージ又はその改変体、λファージ又はその改変体、pBR322又はその改変体(pB325、pAT153、pUC8など)等、酵母を宿主とするベクターとしてはpYepSec1、pMFa、pYES2等、昆虫細胞を宿主とするベクターとしてはpAc、pVL等、哺乳類細胞を宿主とするベクターとしてはpCDM8、pMT2PC等を例示することができる。 An appropriate vector is selected according to the purpose of use (cloning, protein expression) and in consideration of the type of host cell. M13 phage or a modified form thereof, λ phage or a modified form thereof, pBR322 or a modified form thereof (pB325, pAT153, pUC8, etc.), etc., as a vector using E. coli as a host, pYepSec1, pMFa, pYES2 Examples of vectors using insect cells as hosts include pAc and pVL, and examples of vectors using mammalian cells as hosts include pCDM8 and pMT2PC.
 本発明のベクターは好ましくは発現ベクターである。「発現ベクター」とは、それに挿入された核酸を目的の細胞(宿主細胞)内に導入することができ、且つ当該細胞内において発現させることが可能なベクターをいう。発現ベクターは通常、挿入された核酸の発現に必要なプロモーター配列や、発現を促進させるエンハンサー配列等を含む。選択マーカーを含む発現ベクターを使用することもできる。かかる発現ベクターを用いた場合には、選択マーカーを利用して発現ベクターの導入の有無(及びその程度)を確認することができる。 The vector of the present invention is preferably an expression vector. “Expression vector” refers to a vector capable of introducing a nucleic acid inserted therein into a target cell (host cell) and allowing expression in the cell. Expression vectors usually contain a promoter sequence necessary for the expression of the inserted nucleic acid, an enhancer sequence that promotes expression, and the like. An expression vector containing a selectable marker can also be used. When such an expression vector is used, the presence / absence (and extent) of introduction of the expression vector can be confirmed using a selection marker.
 本発明の核酸のベクターへの挿入、選択マーカー遺伝子の挿入(必要な場合)、プロモーターの挿入(必要な場合)等は標準的な組換えDNA技術(例えば、Molecular Cloning, Third Edition, 1.84, Cold Spring Harbor Laboratory Press, New Yorkを参照することができる、制限酵素及びDNAリガーゼを用いた周知の方法)を用いて行うことができる。 Insertion of the nucleic acid of the present invention into a vector, insertion of a selectable marker gene (if necessary), insertion of a promoter (if necessary), etc. are performed using standard recombinant DNA techniques (for example, Molecular Cloning, Third Edition, 1.84, Cold Spring Harbor Laboratory Press and New York, which can be referred to, are known methods using restriction enzymes and DNA ligases).
 宿主細胞としては、取り扱いの容易さの点から、大腸菌(エシェリヒア・コリ)、出芽酵母(サッカロマイセス・セレビシエ)などの微生物を用いることが好ましいが、組換えDNAが複製可能で且つ変異GOの遺伝子が発現可能な宿主細胞であれば利用可能である。大腸菌の例としてT7系プロモーターを利用する場合は大腸菌BL21(DE3)pLysS、そうでない場合は大腸菌JM109を挙げることができる。また、出芽酵母の例として出芽酵母SHY2、出芽酵母AH22あるいは出芽酵母INVSc1(インビトロジェン社)を挙げることができる。 The host cell is preferably a microorganism such as Escherichia coli (Escherichia coli) or budding yeast (Saccharomyces cerevisiae) from the viewpoint of ease of handling, but the recombinant DNA can be replicated and the mutant GO gene can be used. Any host cell capable of expression can be used. Examples of E. coli include E. coli BL21 (DE3) pLysS when T7 promoter is used, and E. coli JM109 otherwise. Examples of budding yeast include budding yeast SHY2, budding yeast AH22, or budding yeast INVSc1 (Invitrogen).
 本発明の他の局面は、本発明の組換えDNAを保有する微生物(即ち形質転換体)に関する。本発明の微生物は、上記本発明のベクターを用いたトランスフェクション乃至はトランスフォーメーションによって得ることができる。例えば、塩化カルシウム法(ジャーナル オブ モレキュラー バイオロジー(J.Mol. Biol.)、第53巻、第159頁 (1970))、ハナハン(Hanahan)法(ジャーナル オブ モレキュラー バイオロジー、第166巻、第557頁 (1983))、SEM法(ジーン(Gene)、第96巻、第23頁(1990)〕、チャング(Chung)らの方法(プロシーディングズ オブ ザ ナショナル アカデミー オブ サイエンシーズ オブ ザ USA、第86巻、第2172頁(1989))、リン酸カルシウム共沈降法、エレクトロポーレーション(Potter,H. et al., Proc. Natl. Acad. Sci. U.S.A. 81, 7161-7165(1984))、リポフェクション(Felgner, P.L. et al.,  Proc. Natl. Acad. Sci. U.S.A. 84,7413-7417(1984))等によって実施することができる。尚、本発明の微生物は、本発明の変異GOを生産することに利用することができる(後述の変異酵素の調製法の欄を参照)。 Another aspect of the present invention relates to a microorganism (that is, a transformant) having the recombinant DNA of the present invention. The microorganism of the present invention can be obtained by transfection or transformation using the vector of the present invention. For example, calcium chloride method (Journal of Molecular Biology (J. Mol. Biol.), Volume 53, pp. 159 (1970)), Hanahan Method (Journal of Molecular Biology, Volume 166, 557) (1983), SEM (Gene, 96, 23 (1990)), Chung et al. (Proceedings of the National Academy of Sciences of the USA, 86 Vol., P. 2172 (1989)), calcium phosphate coprecipitation method, electroporation (Potter, H. et al., Proc. Natl. Acad. Sci. USA 81, 7161-7165 (1984)), lipofection (Felgner, PL et al., Proc. Natl. Acad. Sci. USA 84,7413-7417 (1984)) etc. The microorganism of the present invention is used for producing the mutant GO of the present invention. (See below for how to prepare mutant enzymes) Column).
(変異GOの用途)
 本発明の第3の局面は変異GOの用途に関する。この局面ではまず、変異GOを用いたグルコース測定法が提供される。本発明のグルコース測定法では本酵素による酸化還元反応を利用して試料中のグルコース量を測定する。本発明は例えば血糖値の測定、食品(調味料や飲料など)中のグルコース濃度の測定などに利用される。また、発酵食品(例えば食酢)又は発酵飲料(例えばビールや酒)の製造工程において発酵度を調べるために本発明を利用してもよい。
(Use of Mutation GO)
The third aspect of the present invention relates to the use of mutant GO. In this aspect, first, a glucose measurement method using a mutant GO is provided. In the glucose measuring method of the present invention, the amount of glucose in a sample is measured using an oxidation-reduction reaction by this enzyme. The present invention is used, for example, for measurement of blood glucose level, measurement of glucose concentration in foods (such as seasonings and beverages), and the like. Moreover, you may utilize this invention in order to investigate a fermentation degree in the manufacturing process of fermented foods (for example, vinegar) or fermented drinks (for example, beer and liquor).
 本発明はまた、本酵素を含むグルコース測定用試薬を提供する。当該試薬は上記の本発明のグルコース測定法に使用される。 The present invention also provides a glucose measuring reagent containing the present enzyme. The reagent is used in the glucose measurement method of the present invention described above.
 本発明は更に、本発明のグルコース測定法を実施するためのキット(グルコース測定用キット)を提供する。本発明のキットは、本酵素を含むグルコース測定用試薬の他、反応用試薬、緩衝液、グルコース標準液などを任意の要素として含む。また、本発明のグルコース測定キットには通常、使用説明書が添付される。 The present invention further provides a kit (glucose measurement kit) for carrying out the glucose measurement method of the present invention. The kit of the present invention includes a reagent for measuring glucose containing the present enzyme, a reagent for reaction, a buffer solution, a glucose standard solution and the like as optional elements. In addition, an instruction manual is usually attached to the glucose measurement kit of the present invention.
 本発明は更なる用途として、工業製品(各種加工食品、菓子類、清涼飲料水、アルコール飲料、栄養補助食品等の食品や化粧料など)又はその原料等に本発明の変異GOを作用させることによってグルコース含量を低下させる方法及び当該用途に使用される酵素剤を提供する。例えば、本発明の変異GOを食品に適用した場合には、グルコース含量の低下によりメイラード反応を抑制すること等が可能である。本発明の酵素剤は有効成分(変異GO)の他、賦形剤、緩衝剤、懸濁剤、安定剤、保存剤、防腐剤、生理食塩水などを含有していてもよい。賦形剤としてはデンプン、デキストリン、マルトース、トレハロース、乳糖、D-グルコース、ソルビトール、D-マンニトール、白糖、グリセロール等を用いることができる。緩衝剤としてはリン酸塩、クエン酸塩、酢酸塩等を用いることができる。安定剤としてはプロピレングリコール、アスコルビン酸等を用いることができる。保存剤としてはフェノール、塩化ベンザルコニウム、ベンジルアルコール、クロロブタノール、メチルパラベン等を用いることができる。防腐剤としてはエタノール、塩化ベンザルコニウム、パラオキシ安息香酸、クロロブタノール等を用いることができる。 As a further application of the present invention, the mutant GO of the present invention is allowed to act on industrial products (various processed foods, confectionery, soft drinks, alcoholic beverages, foods such as dietary supplements, and cosmetics) or their raw materials. Provides a method for reducing the glucose content and an enzyme agent used in the application. For example, when the mutant GO of the present invention is applied to food, the Maillard reaction can be suppressed by reducing the glucose content. The enzyme agent of the present invention may contain excipients, buffers, suspension agents, stabilizers, preservatives, preservatives, physiological saline and the like in addition to the active ingredient (mutant GO). As the excipient, starch, dextrin, maltose, trehalose, lactose, D-glucose, sorbitol, D-mannitol, sucrose, glycerol and the like can be used. Phosphate, citrate, acetate, etc. can be used as the buffer. As the stabilizer, propylene glycol, ascorbic acid or the like can be used. As preservatives, phenol, benzalkonium chloride, benzyl alcohol, chlorobutanol, methylparaben, and the like can be used. As preservatives, ethanol, benzalkonium chloride, paraoxybenzoic acid, chlorobutanol and the like can be used.
(変異酵素の設計法)
 本発明の別の局面は変異酵素の設計法に関する。本発明の設計法では、以下のステップ(i)及び(ii)を実施する。
 ステップ(i):微生物由来グルコースオキシダーゼ(微生物由来GO)である変異対象酵素のアミノ酸配列において、以下の(1)のアミノ酸を特定する。
 (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸
(Method for designing mutant enzymes)
Another aspect of the present invention relates to a method for designing a mutant enzyme. In the design method of the present invention, the following steps (i) and (ii) are performed.
Step (i): The following amino acid (1) is specified in the amino acid sequence of the enzyme to be mutated, which is a microorganism-derived glucose oxidase (microorganism-derived GO).
(1) Amino acid corresponding to the 444th amino acid of the amino acid sequence shown in SEQ ID NO: 1
 本発明では、上記(1)のアミノ酸を置換することによって、GOをGDH化する際のグルコースに対する親和性の向上を図る。 In the present invention, by replacing the amino acid of (1) above, the affinity for glucose when GO is converted to GDH is improved.
 本発明の設計法における変異対象酵素は微生物由来GOである。変異対象酵素は典型的には野生型酵素(天然において見出される酵素)である。しかしながら、既に何らかの変異ないし改変が施された酵素を変異対象酵素とすることを妨げるものではない。微生物由来GOの例はアスペルギルス・ニガーのGO及びペニシリウム・アマガサキエンスのGOである。ここで例示した酵素のアミノ酸配列(一例)を以下に示す。尚、好ましい一態様では、これらの中のいずれかのアミノ酸配列からなる酵素を変異対象酵素とする。
 アスペルギルス・ニガー(Aspergillus niger)のGO: 配列番号1のアミノ酸配列
 ペニシリウム・アマガサキエンス(Penicillium amagasakiense)のGO: 配列番号2のアミノ酸配列
The enzyme to be mutated in the design method of the present invention is a microorganism-derived GO. The enzyme to be mutated is typically a wild-type enzyme (an enzyme found in nature). However, this does not preclude that an enzyme that has already undergone some mutation or modification is used as the enzyme to be mutated. Examples of microorganism-derived GO are Aspergillus niger GO and Penicillium amagasakiens GO. The amino acid sequence (one example) of the enzyme exemplified here is shown below. In a preferred embodiment, an enzyme consisting of any one of these amino acid sequences is an enzyme to be mutated.
GO of Aspergillus niger: amino acid sequence of SEQ ID NO: 1 GO of Penicillium amagasakiense: amino acid sequence of SEQ ID NO: 2
 アスペルギルス・ニガーGOについては、上記配列(配列番号1)の他にもいくつかの配列が知られている。各種アスペルギルス・ニガー由来GOのアミノ酸配列のアライメント比較を図6~9に示す。 For Aspergillus niger GO, several sequences are known in addition to the above sequence (SEQ ID NO: 1). 6 to 9 show alignment comparisons of amino acid sequences of various Aspergillus niger-derived GOs.
 好ましくは、ステップ(i)において、上記(1)のアミノ酸に加えて、以下の(2)のアミノ酸を特定する。
 (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸
Preferably, in step (i), in addition to the amino acid of (1) above, the following amino acid of (2) is specified.
(2) Amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1
 上記(2)のアミノ酸はGOのGDH活性に重要である。本発明では、上記(1)のアミノ酸に加えて上記(2)のアミノ酸も置換することにより、グルコースに対する親和性の高い、GDH化酵素を得る。 The amino acid (2) above is important for GDH activity of GO. In the present invention, a GDHase having high affinity for glucose is obtained by substituting the amino acid of (2) in addition to the amino acid of (1).
 本発明ではステップ(i)の後、以下のステップ(ii)を行う。
 ステップ(ii):変異対象酵素のアミノ酸配列を基にして、ステップ(i)で特定されたアミノ酸配列が他のアミノ酸に置換されたアミノ酸配列を構築する。
In the present invention, the following step (ii) is performed after step (i).
Step (ii): Based on the amino acid sequence of the enzyme to be mutated, an amino acid sequence in which the amino acid sequence specified in step (i) is substituted with another amino acid is constructed.
 置換後のアミノ酸の種類は特に限定されるものではない。置換後のアミノ酸の例を挙げると、(1)のアミノ酸については、アルギニン、グルタミン酸、グルタミン、ロイシン、メチオニン、スレオニン、トリプトファン、システイン、バリン又はイソロイシンである。好ましくは、アルギニン、グルタミン酸又はグルタミンであり、特に好ましくはアルギニンである。一方、(2)のアミノ酸については、置換後のアミノ酸は例えばグリシン、システイン、プロリン、セリン、グルタミン、アスパラギン又はグルタミン酸である。好ましくは、システイン又はプロリンであり、特に好ましくはプロリンである。 The type of amino acid after substitution is not particularly limited. As examples of the amino acid after substitution, the amino acid (1) is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine or isoleucine. Arginine, glutamic acid or glutamine is preferable, and arginine is particularly preferable. On the other hand, for the amino acid (2), the amino acid after substitution is, for example, glycine, cysteine, proline, serine, glutamine, asparagine, or glutamic acid. Preferred is cysteine or proline, and particularly preferred is proline.
(変異酵素の調製法)
 本発明の更なる局面は変異酵素の調製法に関する。本発明の変異酵素調製法の一態様では、本発明者らが取得に成功した変異GOを遺伝子工学的手法で調製する。この態様の場合、配列番号3又は4のアミノ酸配列をコードする核酸を用意する(ステップ(I))。ここで、「特定のアミノ酸配列をコードする核酸」は、それを発現させた場合に当該アミノ酸配列を有するポリペプチドが得られる核酸であり、当該アミノ酸配列に対応する塩基配列からなる核酸は勿論のこと、そのような核酸に余分な配列(アミノ酸配列をコードする配列であっても、アミノ酸配列をコードしない配列であってもよい)が付加されていてもよい。また、コドンの縮重も考慮される。「配列番号3又は4のアミノ酸配列をコードする核酸」は、本明細書又は添付の配列表が開示する配列情報を参考にし、標準的な遺伝子工学的手法、分子生物学的手法、生化学的手法などを用いることによって、単離された状態に調製することができる。ここで、配列番号3又は4のアミノ酸配列はいずれも、アスペルギルス・ニガー由来GOのアミノ酸配列に変異を施したものである。従って、アスペルギルス・ニガー由来GOをコードする遺伝子(配列番号7)に対して必要な変異を加えることによっても、配列番号3又は4のアミノ酸配列をコードする核酸(遺伝子)を得ることができる。位置特異的塩基配列置換のための方法は当該技術分野において数多く知られており(例えば、Molecular Cloning, Third Edition, Cold Spring Harbor Laboratory Press, New Yorkを参照)、その中から適切な方法を選択して用いることができる。位置特異的変異導入法として、位置特異的アミノ酸飽和変異法を採用することができる。位置特異的アミノ酸飽和変異法は、タンパクの立体構造を基に、求める機能の関与する位置を推定し、アミノ酸飽和変異を導入する「Semi-rational,semi-random」手法である(J.Mol.Biol.331,585-592(2003))。例えば、Quick change(ストラタジーン社)等のキット、Overlap extention PCR(Nucleic Acid Res. 16,7351-7367(1988))を用いて位置特異的アミノ酸飽和変異を導入することが可能である。PCRに用いるDNAポリメラーゼはTaqポリメラーゼ等を用いることができる。但し、KOD-PLUS-(東洋紡社)、Pfu turbo(ストラタジーン社)などの精度の高いDNAポリメラーゼを用いることが好ましい。
(Method for preparing mutant enzyme)
A further aspect of the present invention relates to a method for preparing a mutant enzyme. In one embodiment of the method for preparing a mutant enzyme of the present invention, a mutant GO successfully obtained by the present inventors is prepared by a genetic engineering technique. In this embodiment, a nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4 is prepared (Step (I)). Here, the “nucleic acid encoding a specific amino acid sequence” is a nucleic acid from which a polypeptide having the amino acid sequence is obtained when it is expressed, not to mention a nucleic acid comprising a base sequence corresponding to the amino acid sequence. In addition, an extra sequence (either a sequence encoding an amino acid sequence or a sequence not encoding an amino acid sequence) may be added to such a nucleic acid. Codon degeneracy is also considered. "Nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4" refers to the sequence information disclosed in this specification or the attached sequence listing, and uses standard genetic engineering techniques, molecular biological techniques, biochemical By using a technique or the like, it can be prepared in an isolated state. Here, all of the amino acid sequences of SEQ ID NO: 3 or 4 are obtained by mutating the amino acid sequence of Aspergillus niger-derived GO. Therefore, a nucleic acid (gene) encoding the amino acid sequence of SEQ ID NO: 3 or 4 can also be obtained by adding a necessary mutation to the gene encoding Aspergillus niger-derived GO (SEQ ID NO: 7). Many methods for position-specific base sequence substitution are known in the art (see, for example, Molecular Cloning, Third Edition, Cold Spring Harbor Laboratory Press, New York), and an appropriate method is selected from them. Can be used. As a position-specific mutation introducing method, a position-specific amino acid saturation mutation method can be employed. The position-specific amino acid saturation mutation method is a “Semi-rational, semi-random” technique in which amino acid saturation mutation is introduced by estimating the position where the desired function is involved based on the three-dimensional structure of the protein (J. Mol. Biol. 331, 585-592 (2003)). For example, a site-specific amino acid saturation mutation can be introduced by using a kit such as Quick change (Stratagene) and overlap extention PCR (Nucleic Acid Res. 16,7351-7367 (1988)). As a DNA polymerase used for PCR, Taq polymerase or the like can be used. However, it is preferable to use a highly accurate DNA polymerase such as KOD-PLUS- (Toyobo), Pfu turbo (Stratagene).
 本発明の他の一態様では本発明の設計法によって設計されたアミノ酸配列を基にして変異酵素を調製する。この態様の場合ステップ(I)では本発明の設計法によって構築されたアミノ酸配列をコードする核酸を用意することになる。例えば、本発明の設計法によって構築されたアミノ酸配列に基づいて、変異対象酵素をコードする遺伝子に対して必要な変異(即ち、発現産物であるタンパク質における、特定位置でのアミノ酸の置換)を加え、変異酵素をコードする核酸(遺伝子)を得る。 In another embodiment of the present invention, a mutant enzyme is prepared based on the amino acid sequence designed by the design method of the present invention. In this embodiment, in step (I), a nucleic acid encoding an amino acid sequence constructed by the designing method of the present invention is prepared. For example, based on the amino acid sequence constructed by the design method of the present invention, a necessary mutation (that is, substitution of an amino acid at a specific position in a protein as an expression product) is added to a gene encoding an enzyme to be mutated. A nucleic acid (gene) encoding the mutant enzyme is obtained.
 ステップ(I)に続いて、用意した核酸を発現させる(ステップ(II))。例えば、まず上記核酸を挿入した発現ベクターを用意し、これを用いて宿主細胞を形質転換する。「発現ベクター」とは、それに挿入された核酸を目的の細胞(宿主細胞)内に導入することができ、且つ当該細胞内において発現させることが可能なベクターをいう。発現ベクターは通常、挿入された核酸の発現に必要なプロモーター配列や、発現を促進させるエンハンサー配列等を含む。選択マーカーを含む発現ベクターを使用することもできる。かかる発現ベクターを用いた場合には、選択マーカーを利用して発現ベクターの導入の有無(及びその程度)を確認することができる。 Following step (I), the prepared nucleic acid is expressed (step (II)). For example, first, an expression vector into which the nucleic acid is inserted is prepared, and a host cell is transformed using the expression vector. “Expression vector” refers to a vector capable of introducing a nucleic acid inserted therein into a target cell (host cell) and allowing expression in the cell. Expression vectors usually contain a promoter sequence necessary for the expression of the inserted nucleic acid, an enhancer sequence that promotes expression, and the like. An expression vector containing a selectable marker can also be used. When such an expression vector is used, the presence / absence (and extent) of introduction of the expression vector can be confirmed using a selection marker.
 次に、発現産物である変異酵素が産生される条件下で形質転換体を培養する。形質転換体の培養は常法に従えばよい。培地に使用する炭素源としては資化可能な炭素化合物であればよく、例えばグルコース、シュークロース、ラクトース、マルトース、糖蜜、ピルビン酸などが使用される。また、窒素源としては利用可能な窒素化合物であればよく、例えばペプトン、肉エキス、酵母エキス、カゼイン加水分解物、大豆粕アルカリ抽出物などが使用される。その他、リン酸塩、炭酸塩、硫酸塩、マグネシウム、カルシウム、カリウム、鉄、マンガン、亜鉛などの塩類、特定のアミノ酸、特定のビタミンなどが必要に応じて使用される。 Next, the transformant is cultured under conditions where a mutant enzyme as an expression product is produced. The transformant may be cultured according to a conventional method. The carbon source used in the medium may be any assimitable carbon compound. For example, glucose, sucrose, lactose, maltose, molasses, pyruvic acid and the like are used. The nitrogen source may be any nitrogen compound that can be used. For example, peptone, meat extract, yeast extract, casein hydrolyzate, soybean cake alkaline extract, and the like are used. In addition, phosphates, carbonates, sulfates, salts such as magnesium, calcium, potassium, iron, manganese, and zinc, specific amino acids, specific vitamins, and the like are used as necessary.
 培養温度は培養対象の形質転換体の生育特性や変異型酵素の産生特性などを考慮して設定することができる。好ましくは30℃~40℃の範囲内(より好ましくは37℃付近)で設定することができる。培養時間は、培養対象の形質転換体の生育特性や変異型酵素の産生特性などを考慮して設定することができる。培地のpHは、形質転換体が生育し且つ酵素が産生される範囲内に調製される。好ましくは培地のpHを6.0~9.0程度(好ましくはpH7.0付近)とする。 The culture temperature can be set in consideration of the growth characteristics of the transformant to be cultured and the production characteristics of the mutant enzyme. Preferably, it can be set within the range of 30 ° C. to 40 ° C. (more preferably around 37 ° C.). The culture time can be set in consideration of the growth characteristics of the transformant to be cultured and the production characteristics of the mutant enzyme. The pH of the medium is adjusted so that the transformant grows and the enzyme is produced. Preferably, the pH of the medium is about 6.0 to 9.0 (preferably around pH 7.0).
 続いて、発現産物(変異酵素)を回収する(ステップ(III))。培養後の菌体を含む培養液をそのまま、或いは濃縮、不純物の除去などを経た後に酵素溶液として利用することもできるが、一般的には培養液又は菌体より発現産物を一旦回収する。発現産物が分泌型タンパク質であれば培養液より、それ以外であれば菌体内より回収することができる。培養液から回収する場合には、例えば培養上清をろ過、遠心処理して不溶物を除去した後、減圧濃縮、膜濃縮、硫酸アンモニウムや硫酸ナトリウムを利用した塩析、メタノールやエタノール又はアセトンなどによる分別沈殿法、透析、加熱処理、等電点処理、ゲルろ過や吸着クロマトグラフィー、イオン交換クロマトグラフィー、アフィニティクロマトグラフィー等の各種クロマトグラフィー(例えば、セファデックス(Sephadex)ゲル(GEヘルスケアバイオサイエンス)などによるゲルろ過、DEAEセファロースCL-6B (GEヘルスケアバイオサイエンス)、オクチルセファロースCL-6B (GEヘルスケアバイオサイエンス)、CMセファロースCL-6B(GEヘルスケアバイオサイエンス))などを組み合わせて分離、精製を行ことにより変異酵素の精製品を得ることができる。他方、菌体内から回収する場合には、培養液をろ過、遠心処理等することによって菌体を採取し、次いで菌体を加圧処理、超音波処理などの機械的方法またはリゾチームなどによる酵素的方法で破壊した後、上記と同様に分離、精製を行うことにより変異酵素の精製品を得ることができる。 Subsequently, the expression product (mutant enzyme) is recovered (step (III)). Although the culture solution containing the cultured microbial cells can be used as it is or after concentration, removal of impurities, etc., it can be used as an enzyme solution. In general, the expression product is once recovered from the culture solution or microbial cells. If the expression product is a secreted protein, it can be recovered from the culture solution, and if not, it can be recovered from the fungus body. When recovering from the culture solution, for example, the culture supernatant is filtered and centrifuged to remove insoluble matters, followed by concentration under reduced pressure, membrane concentration, salting out using ammonium sulfate or sodium sulfate, methanol, ethanol, acetone, etc. Various chromatographic methods such as fractional precipitation, dialysis, heat treatment, isoelectric point treatment, gel filtration, adsorption chromatography, ion exchange chromatography, affinity chromatography (eg, Sephadex gel (GE Healthcare Bioscience)) Separation using a combination of gel filtration, DEAE Sepharose CL-6B (GE Healthcare Bioscience), Octyl Sepharose CL-6B (GE Healthcare Bioscience), CM Sepharose CL-6B (GE Healthcare Bioscience) Purify and obtain the purified product of mutant enzyme Door can be. On the other hand, when recovering from the microbial cells, the microbial cells are collected by filtering, centrifuging, etc., and then the microbial cells are subjected to mechanical methods such as pressure treatment, ultrasonic treatment, or enzymatic methods such as lysozyme. After destruction by the method, a purified product of the mutant enzyme can be obtained by separation and purification in the same manner as described above.
 上記のようにして得られた精製酵素を、例えば凍結乾燥や真空乾燥或いはスプレードライなどにより粉末化して提供することも可能である。その際、精製酵素を予めリン酸緩衝液、トリエタノールアミン緩衝液、トリス塩酸緩衝液やGOODの緩衝液に溶解させておいてもよい。好ましくは、リン酸緩衝液、トリエタノールアミン緩衝液を使用することができる。尚、ここでGOODの緩衝液としてはPIPES、MES又はMOPSが挙げられる。 It is also possible to provide the purified enzyme obtained as described above by pulverizing it by, for example, freeze drying, vacuum drying or spray drying. At that time, the purified enzyme may be dissolved in a phosphate buffer, triethanolamine buffer, Tris-HCl buffer or GOOD buffer in advance. Preferably, a phosphate buffer or a triethanolamine buffer can be used. In addition, PIPES, MES, or MOPS is mentioned as a GOOD buffer here.
 通常は、以上のように適当な宿主-ベクター系を利用して遺伝子の発現~発現産物(変異酵素)の回収を行うが、無細胞合成系を利用することにしてもよい。ここで、「無細胞合成系(無細胞転写系、無細胞転写/翻訳系)」とは、生細胞を用いるのではく、生細胞由来の(或いは遺伝子工学的手法で得られた)リボソームや転写・翻訳因子などを用いて、鋳型である核酸(DNAやmRNA)からそれがコードするmRNAやタンパク質をin vitroで合成することをいう。無細胞合成系では一般に、細胞破砕液を必要に応じて精製して得られる細胞抽出液が使用される。細胞抽出液には一般に、タンパク質合成に必要なリボソーム、開始因子などの各種因子、tRNAなどの各種酵素が含まれる。タンパク質の合成を行う際には、この細胞抽出液に各種アミノ酸、ATP、GTPなどのエネルギー源、クレアチンリン酸など、タンパク質の合成に必要なその他の物質を添加する。勿論、タンパク質合成の際に、別途用意したリボソームや各種因子、及び/又は各種酵素などを必要に応じて補充してもよい。 Usually, gene expression and expression product (mutant enzyme) are collected using an appropriate host-vector system as described above, but a cell-free synthesis system may be used. Here, “cell-free synthesis system (cell-free transcription system, cell-free transcription / translation system)” refers to a ribosome derived from a live cell (or obtained by a genetic engineering technique), not a live cell. This refers to the in vitro synthesis of mRNA and protein encoded by a template nucleic acid (DNA or mRNA) using transcription / translation factors. In a cell-free synthesis system, a cell extract obtained by purifying a cell disruption solution as needed is generally used. Cell extracts generally contain ribosomes necessary for protein synthesis, various factors such as initiation factors, and various enzymes such as tRNA. When protein is synthesized, other substances necessary for protein synthesis such as various amino acids, energy sources such as ATP and GTP, and creatine phosphate are added to the cell extract. Of course, a ribosome, various factors, and / or various enzymes prepared separately may be supplemented as necessary during protein synthesis.
 タンパク質合成に必要な各分子(因子)を再構成した転写/翻訳系の開発も報告されている(Shimizu, Y. et al.: Nature Biotech., 19, 751-755, 2001)。この合成系では、バクテリアのタンパク質合成系を構成する3種類の開始因子、3種類の伸長因子、終結に関与する4種類の因子、各アミノ酸をtRNAに結合させる20種類のアミノアシルtRNA合成酵素、及びメチオニルtRNAホルミル転移酵素からなる31種類の因子の遺伝子を大腸菌ゲノムから増幅し、これらを用いてタンパク質合成系をin vitroで再構成している。本発明ではこのような再構成した合成系を利用してもよい。 Development of a transcription / translation system that reconstitutes each molecule (factor) necessary for protein synthesis has also been reported (Shimizu, Y. et al .: Nature Biotech., 19, 751-755, 2001). In this synthesis system, three types of initiation factors constituting bacterial protein synthesis system, three types of elongation factors, four types of factors involved in termination, 20 types of aminoacyl-tRNA synthetases that bind each amino acid to tRNA, and Genes of 31 kinds of factors consisting of methionyl tRNA formyltransferase are amplified from the Escherichia coli genome, and the protein synthesis system is reconstructed in vitro using these genes. In the present invention, such a reconstructed synthesis system may be used.
 用語「無細胞転写/翻訳系」は、無細胞タンパク質合成系、in vitro翻訳系又はin vitro転写/翻訳系と交換可能に使用される。in vitro翻訳系ではRNAが鋳型として用いられてタンパク質が合成される。鋳型RNAとしては全RNA、mRNA、in vitro転写産物などが使用される。他方のin vitro転写/翻訳系ではDNAが鋳型として用いられる。鋳型DNAはリボソーム結合領域を含むべきであって、また適切なターミネータ配列を含むことが好ましい。尚、in vitro転写/翻訳系では、転写反応及び翻訳反応が連続して進行するように各反応に必要な因子が添加された条件が設定される。 The term “cell-free transcription / translation system” is used interchangeably with a cell-free protein synthesis system, in-vitro translation system or in-vitro transcription / translation system. In an in vitro translation system, RNA is used as a template to synthesize proteins. As the template RNA, total RNA, mRNA, in vitro transcript and the like are used. The other in vitro transcription / translation system uses DNA as a template. The template DNA should contain a ribosome binding region and preferably contain an appropriate terminator sequence. In the in vitro transcription / translation system, conditions to which factors necessary for each reaction are added are set so that the transcription reaction and the translation reaction proceed continuously.
 これまでの研究によって、アスペルギルス・ニガー由来GOに二箇所の変異(D446H及びV582P)を加えた多重変異酵素(「GOM2」と呼称する)が高いGDH活性を示し且つ基質特異性にも優れることが明らかとなった(特許文献21)。この多重変異酵素(GOM2)の特性を詳細に調べたところ、グルコースに対する基質親和性の点において改善の余地があるものであった。そこで、基質親和性を向上させることがセンサの性能の向上に重要であると考え、以下の検討を行った。 According to previous studies, a multiple mutant enzyme (referred to as “GOM2”) in which two mutations (D446H and V582P) are added to Aspergillus niger-derived GO exhibits high GDH activity and excellent substrate specificity. It became clear (patent document 21). When the characteristics of this multiple mutant enzyme (GOM2) were examined in detail, there was room for improvement in terms of substrate affinity for glucose. Therefore, considering that improving the substrate affinity is important for improving the performance of the sensor, the following examination was performed.
1.変異位置の特定
 基質親和性を改善するにあたり、変異酵素GOM2の変異箇所それぞれにおける周辺のアミノ酸に対して、複数種のアミノ酸に置換するよう設計した変異を導入し、S444への変異導入により、GDH化を示すことを見出した。
1. Identification of mutation position In order to improve substrate affinity, mutations designed to replace multiple amino acids are introduced into the surrounding amino acids at each mutation site of the mutant enzyme GOM2, and GDH is introduced by introducing mutations into S444. It has been found that
2.GDH活性の評価
 アスペルギルス・ニガーGO-1号菌(天野エンザイム社保有)からGen Elute Plant Genomic DNA kit(シグマ社)を用いてゲノムDNAを抽出した後、PCRによりGO遺伝子を取得した。PCR後の増幅産物をpYES2に挿入してpYES-GO-K-P-2プラスミドとし、構築したpYES-GO-K-P-2プラスミドを鋳型として、S444へ複数種のアミノ酸に置換するよう設計した変異グルコースオキシダーゼを有するプラスミドを構築した。変異導入後のプラスミドを大腸菌DH5αに形質転換後、プラスミド抽出を行い、変異ライブラリーを作製した。得られたライブラリーをサッカロマイセス・セレビシエINVSc1(インビトロジェン社)に形質転換し、生育してきたコロニーをについて、液体培養を行い、GO活性及びGDH活性を調べた。液体培養での発現はpYES2のマニュアルを参考にした。
2. Evaluation of GDH activity Genomic DNA was extracted from Aspergillus niger GO-1 (owned by Amano Enzyme) using Gen Elute Plant Genomic DNA kit (Sigma), and the GO gene was obtained by PCR. Mutated glucose oxidase designed to substitute multiple amino acids into S444 using the pYES-GO-KP-2 plasmid as a template by inserting the amplified product after PCR into pYES2. A plasmid with The transformed plasmid was transformed into Escherichia coli DH5α, followed by plasmid extraction to prepare a mutation library. The obtained library was transformed into Saccharomyces cerevisiae INVSc1 (Invitrogen), and the grown colonies were subjected to liquid culture to examine GO activity and GDH activity. The expression in liquid culture was referred to the manual for pYES2.
 各試薬200μL対してS444へ20種類のアミノ酸に置換するよう設計した変異グルコースオキシダーゼの培養上清を20μL添加し、37℃で反応させた。反応開始後5分と10分に吸光度を測定し、吸光度差からGO活性とGDH活性を求めた。尚、アスペルギルス・ニガーGO-1号菌由来GO(GOと表示)、アスペルギルス・ニガーGO-1号菌由来GOに二箇所の変異(D446H及びV582P)を加えた多重変異酵素(GOM2)を比較対象(コントロール)とした。
<GOアッセイ用試薬>
 フェノール含有リン酸緩衝液 21mL
 1mol/L グルコース 3mL
 25u/mL PO-3 5mL
 0.4g/dL 4-A.A 1mL
<GDHアッセイ用試薬>
 50mM PIPES-NaOH(cont. 0.1% Triton X-100) pH 7.0 23mL
 1mol/L グルコース 3mL
 3mmol/L PMS 3mL
 6.6mmol/L NTB 1mL
20 μL of the culture supernatant of mutant glucose oxidase designed to substitute 20 kinds of amino acids into S444 for 200 μL of each reagent was added and reacted at 37 ° C. Absorbance was measured 5 minutes and 10 minutes after the start of the reaction, and GO activity and GDH activity were determined from the difference in absorbance. Aspergillus niger GO-1 derived GO (indicated as GO) and Aspergillus niger GO-1 derived GO multiple mutation enzyme (GOM2) with two mutations (D446H and V582P) added for comparison (Control).
<Reagent for GO assay>
Phenolic phosphate buffer solution 21mL
1mol / L glucose 3mL
25u / mL PO-3 5mL
0.4g / dL 4-AA 1mL
<Reagent for GDH assay>
50 mM PIPES-NaOH (cont.0.1% Triton X-100) pH 7.0 23 mL
1mol / L glucose 3mL
3mmol / L PMS 3mL
6.6mmol / L NTB 1mL
 S444についての測定結果を図2に示す。GDH活性/GO活性を高める、置換後のアミノ酸はR、E、Q、L、M、T、W、C、V、Iである。中でも、R、E又はQに置換することがGDH化に有効であり、Rへの置換が最も好ましいと評価できる。一方、V582についての測定結果を図3に示す。GDH活性/GO活性を高める、置換後のアミノ酸はN、S、E、Q、P、C、Gである。中でも、Pに置換することがGDH化に特に有効である。 Fig. 2 shows the measurement results for S444. Substituted amino acids that increase GDH activity / GO activity are R, E, Q, L, M, T, W, C, V, and I. Among these, substitution with R, E, or Q is effective for GDH, and substitution with R can be evaluated as being most preferable. On the other hand, the measurement results for V582 are shown in FIG. Substituted amino acids that increase GDH activity / GO activity are N, S, E, Q, P, C, and G. Of these, substitution with P is particularly effective for GDH.
3.基質親和性の評価
 上記の結果を踏まえ、444位アミノ酸がセリンからアルギニンに置換され、582位アミノ酸がバリンからプロリンに置換された多重変異体(S444R,V582P:「GOM6」と呼称する)のグルコースに対する親和性を、多重変異体(GOM2)と比較しつつ以下の方法で評価した。
3. Evaluation of substrate affinity Based on the above results, glucose of multiple mutants (S444R, V582P: referred to as “GOM6”) in which the amino acid at position 444 was substituted from serine to arginine and the amino acid at position 582 was replaced from valine to proline The affinity for was evaluated by the following method in comparison with multiple mutants (GOM2).
 GOM2およびGOM6の形質転換株の液体培養を行い、DEAE-Sepharose精製、脱塩濃縮を行い、精製酵素溶液を取得した。得られた精製酵素溶液を用いて、Km値を測定により算出した。尚、液体培養での発現はpYES2のマニュアルを参考にした。 Liquid culture of GOM2 and GOM6 transformants was performed, and DEAE-Sepharose purification and desalting concentration were performed to obtain a purified enzyme solution. The Km value was calculated by measurement using the purified enzyme solution obtained. The expression in liquid culture was referred to the manual for pYES2.
 GOM6のグルコースに対するKm値は22.9×10-3 mol/Lであり(図4)、GOM2のKm値(116×10-3 mol/L)の約1/5であった。即ち、GOM2に比べ、GOM6はグルコースに対して格段に高い親和性を示すことが明らかとなった。尚、アスペルギルス・ニガー由来GOのグルコースに対するKm値は12.9×10-3 mol/Lであった。 The Km value for glucose of GOM6 was 22.9 × 10 −3 mol / L (FIG. 4), which was about 1/5 of the Km value of GOM2 (116 × 10 −3 mol / L). That is, it was revealed that GOM6 has a much higher affinity for glucose than GOM2. The Km value for glucose of Aspergillus niger-derived GO was 12.9 × 10 −3 mol / L.
4.基質特異性の確認
 多重変異体(GOM6)の基質特異性を以下の通り評価した。即ち、各試薬200μL対して基質親和性確認の実験で用いた精製酵素20μL添加し、37℃で反応させた。反応開始後5分と10分に吸光度を測定し、吸光度差からGDH活性を求めた。各基質を用いた場合のGDH活性を、グルコースを基質とした場合のGDH活性(100%)に対する比率で表した。
<基質特異性確認GDHアッセイ用試薬>
 50mM PIPES-NaOH(cont. 0.1% Triton X-100) pH 7.0 23mL
 1mol/L 基質 3mL
 3mmol/L PMS 3mL
 6.6mmol/L NTB 1mL
4). Confirmation of substrate specificity The substrate specificity of the multiple mutant (GOM6) was evaluated as follows. That is, 20 μL of the purified enzyme used in the substrate affinity confirmation experiment was added to 200 μL of each reagent and reacted at 37 ° C. Absorbance was measured at 5 and 10 minutes after the start of the reaction, and GDH activity was determined from the difference in absorbance. The GDH activity when each substrate was used was expressed as a ratio to the GDH activity (100%) when glucose was used as the substrate.
<Substrate specificity confirmation GDH assay reagent>
50 mM PIPES-NaOH (cont.0.1% Triton X-100) pH 7.0 23 mL
1mol / L substrate 3mL
3mmol / L PMS 3mL
6.6mmol / L NTB 1mL
 結果を図5に示す。多重変異体(GOM6)は、変異前の酵素(アスペルギルス・ニガー由来GO)と同様の基質特異性を示し、実用性に優れることが確認された。 The results are shown in FIG. The multiple mutant (GOM6) showed the same substrate specificity as the pre-mutation enzyme (GO derived from Aspergillus niger) and was confirmed to be highly practical.
5.他のGO由来の多重変異酵素の調製及び特性評価
 特定に成功した変異箇所(S444、V582)の汎用性を検証するために、他のGOに関して多重変異体を調製した。具体的には、公共のデータベースに登録されているアスペルギルス・ニガー由来のGO(gi 121529、配列番号15)の多重変異体1cf3M6(S444R,V582P)と、ペニシリウム・アマガサキエンス由来のGO(配列番号2)の多重変異体1pgeM6(N444R,V582P)を調製し、GDH活性及びGO活性、基質親和性、並びに基質特異性を検討した。また、GOM6との間で置換後のアミノ酸が異なる多重変異体GOM7(S444Q,V582P)及びGOM8(S444E,V582P)についてもその特性を調べた。各多重変異体の調製法及び活性測定法などは上記の実験に準じた。
5. Preparation and characterization of other GO-derived multiple mutant enzymes In order to verify the versatility of successfully identified mutation sites (S444, V582), multiple mutants were prepared for other GOs. Specifically, multiple mutants 1cf3M6 (S444R, V582P) of GO derived from Aspergillus niger (gi 121529, SEQ ID NO: 15) and GO derived from Penicillium amagasakiens registered in public databases (SEQ ID NO: Multiple mutant 1pgeM6 (N444R, V582P) of 2) was prepared, and GDH activity and GO activity, substrate affinity, and substrate specificity were examined. In addition, the characteristics of the multiple mutants GOM7 (S444Q, V582P) and GOM8 (S444E, V582P) differing in amino acid after substitution with GOM6 were also examined. The preparation method and activity measurement method of each multiple mutant were the same as in the above experiment.
 各多重変異体のGDH活性及びGO活性の測定結果を図10に示す。多重変異体GOM7、GOM8、1cf3M6及び1pgeM6の全てについて高度にGDH化していることがわかる。一方、各多重変異体のKm値はGOM6のKm値と同等又はそれ以下であり、高い基質親和性を示す(図11)。また、各多重変異体は基質特異性にも優れる(図12)。 The measurement results of GDH activity and GO activity of each multiple mutant are shown in FIG. It can be seen that the multiple mutants GOM7, GOM8, 1cf3M6 and 1pgeM6 are all highly GDH-ized. On the other hand, the Km value of each multiple mutant is equal to or less than the Km value of GOM6, and shows high substrate affinity (FIG. 11). Each multiple mutant is also excellent in substrate specificity (FIG. 12).
 以上の通り、各多重変異体は期待通りの特性を示し、特定に成功した変異位置の汎用性が高いことが確認された。 As described above, it was confirmed that each of the multiple mutants exhibited the expected characteristics and the versatility of the mutation positions that were successfully identified was high.
 本発明の変異GOは、試料中のグルコース量の検出・定量に有用である。本発明の変異GOのグルコースに対する親和性は高い。従って、本発明の変異GOをグルコースセンサに利用すれば測定精度の向上が期待できる。 The mutant GO of the present invention is useful for detecting and quantifying the amount of glucose in a sample. The affinity of the mutant GO of the present invention for glucose is high. Therefore, if the mutant GO of the present invention is used for a glucose sensor, improvement in measurement accuracy can be expected.
 この発明は、上記発明の実施の形態及び実施例の説明に何ら限定されるものではない。特許請求の範囲の記載を逸脱せず、当業者が容易に想到できる範囲で種々の変形態様もこの発明に含まれる。本明細書の中で明示した論文、公開特許公報、及び特許公報などの内容は、その全ての内容を援用によって引用することとする。 The present invention is not limited to the description of the embodiments and examples of the above invention. Various modifications may be included in the present invention as long as those skilled in the art can easily conceive without departing from the description of the scope of claims. The contents of papers, published patent gazettes, patent gazettes, and the like specified in this specification are incorporated by reference in their entirety.

Claims (23)

  1.  微生物由来グルコースオキシダーゼのアミノ酸配列において、以下の(1)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列からなる変異酵素:
     (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸。
    In the amino acid sequence of glucose oxidase derived from microorganisms, a mutant enzyme comprising an amino acid sequence in which the amino acid of (1) below is replaced with another amino acid:
    (1) An amino acid corresponding to the 444th amino acid in the amino acid sequence shown in SEQ ID NO: 1.
  2.  置換後のアミノ酸が、アルギニン、グルタミン酸、グルタミン、ロイシン、メチオニン、スレオニン、トリプトファン、システイン、バリン又はイソロイシンである、請求項1に記載の変異酵素。 The mutant enzyme according to claim 1, wherein the amino acid after substitution is arginine, glutamic acid, glutamine, leucine, methionine, threonine, tryptophan, cysteine, valine or isoleucine.
  3.  置換後のアミノ酸が、アルギニン、グルタミン酸又はグルタミンである、請求項1に記載の変異酵素。 The mutant enzyme according to claim 1, wherein the amino acid after substitution is arginine, glutamic acid or glutamine.
  4.  置換後のアミノ酸が、アルギニンである、請求項1に記載の変異酵素。 The mutant enzyme according to claim 1, wherein the amino acid after substitution is arginine.
  5.  微生物由来グルコースオキシダーゼのアミノ酸配列において、前記(1)のアミノ酸に加えて、以下の(2)のアミノ酸が他のアミノ酸に置換されたアミノ酸配列からなる、請求項1~4のいずれか一項に記載の変異酵素:
     (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸。
    The amino acid sequence of the microorganism-derived glucose oxidase comprises an amino acid sequence in which the following amino acid (2) is substituted with another amino acid in addition to the amino acid (1): The described mutant enzyme:
    (2) An amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1.
  6.  前記(2)のアミノ酸について、置換後のアミノ酸が、グリシン、システイン、プロリン、セリン、グルタミン、アスパラギン又はグルタミン酸である、請求項5に記載の変異酵素。 The mutant enzyme according to claim 5, wherein the amino acid after substitution of the amino acid of (2) is glycine, cysteine, proline, serine, glutamine, asparagine or glutamic acid.
  7.  微生物由来グルコースオキシダーゼのアミノ酸配列が配列番号1、2又は15のアミノ酸配列である、請求項1~6のいずれか一項に記載の変異酵素。 The mutant enzyme according to any one of claims 1 to 6, wherein the amino acid sequence of the microorganism-derived glucose oxidase is the amino acid sequence of SEQ ID NO: 1, 2, or 15.
  8.  配列番号3又は4のアミノ酸配列からなる、請求項1に記載の変異酵素。 The mutant enzyme according to claim 1, comprising the amino acid sequence of SEQ ID NO: 3 or 4.
  9.  請求項1~8のいずれか一項に記載の変異酵素をコードする遺伝子。 A gene encoding the mutant enzyme according to any one of claims 1 to 8.
  10.  配列番号5又は6の塩基配列を含む、請求項9に記載の遺伝子。 The gene according to claim 9, comprising the nucleotide sequence of SEQ ID NO: 5 or 6.
  11.  請求項9又は10に記載の遺伝子を含む組換えDNA。 Recombinant DNA containing the gene according to claim 9 or 10.
  12.  請求項9又は10に記載の遺伝子を含む組換えベクター。 A recombinant vector comprising the gene according to claim 9 or 10.
  13.  請求項11に記載の組換えDNAを保有する微生物。 A microorganism having the recombinant DNA according to claim 11.
  14.  請求項1~8のいずれか一項に記載の変異酵素を用いて試料中のグルコースを測定することを特徴とする、グルコース測定法。 A glucose measuring method, wherein glucose in a sample is measured using the mutant enzyme according to any one of claims 1 to 8.
  15.  請求項1~8のいずれか一項に記載の変異酵素を含むことを特徴とするグルコース測定用試薬。 A glucose measuring reagent comprising the mutant enzyme according to any one of claims 1 to 8.
  16.  請求項15に記載のグルコース測定用試薬を含む、グルコース測定用キット。 A glucose measurement kit comprising the glucose measurement reagent according to claim 15.
  17.  請求項1~8のいずれか一項に記載の変異酵素を用いて工業製品又はその原料中のグルコース量を低下させることを特徴とする方法。 A method of reducing the amount of glucose in an industrial product or its raw material using the mutant enzyme according to any one of claims 1 to 8.
  18.  請求項1~8のいずれか一項に記載の変異酵素を含有する酵素剤。 An enzyme agent comprising the mutant enzyme according to any one of claims 1 to 8.
  19.  以下のステップ(i)及び(ii)を含む、変異酵素の設計法:
     (i)微生物由来グルコースオキシダーゼである変異対象酵素のアミノ酸配列において、以下の(1)のアミノ酸を特定するステップ:
     (1)配列番号1に示すアミノ酸配列の444位アミノ酸に相当するアミノ酸;
     (ii)変異対象酵素のアミノ酸配列を基にして、ステップ(i)で特定されたアミノ酸配列が他のアミノ酸に置換されたアミノ酸配列を構築するステップ。
    A method for designing a mutant enzyme comprising the following steps (i) and (ii):
    (i) A step of specifying the following amino acid (1) in the amino acid sequence of the enzyme to be mutated, which is a microorganism-derived glucose oxidase:
    (1) an amino acid corresponding to the 444th amino acid of the amino acid sequence shown in SEQ ID NO: 1;
    (ii) A step of constructing an amino acid sequence in which the amino acid sequence specified in step (i) is substituted with another amino acid based on the amino acid sequence of the enzyme to be mutated.
  20.  ステップ(i)において、前記(1)のアミノ酸に加えて、以下の(2)のアミノ酸を特定する、請求項19に記載の設計法:
     (2)配列番号1に示すアミノ酸配列の582位アミノ酸に相当するアミノ酸。
    The design method according to claim 19, wherein, in step (i), in addition to the amino acid of (1), the following amino acid of (2) is specified:
    (2) An amino acid corresponding to amino acid 582 of the amino acid sequence shown in SEQ ID NO: 1.
  21.  微生物由来グルコースオキシダーゼが、アスペルギルス・ニガー又はペニシリウム・アマガサキエンスのグルコースオキシダーゼである、請求項19又は20に記載の設計法。 The design method according to claim 19 or 20, wherein the microorganism-derived glucose oxidase is glucose oxidase of Aspergillus niger or Penicillium amagasakiens.
  22.  グルコースオキシダーゼのアミノ酸配列が配列番号1又は2のアミノ酸配列である、請求項21に記載の設計法。 The design method according to claim 21, wherein the amino acid sequence of glucose oxidase is the amino acid sequence of SEQ ID NO: 1 or 2.
  23.  以下のステップ(I)~(III)を含む、変異酵素の調製法:
     (I)配列番号3又は4のアミノ酸配列、又は請求項19~22のいずれか一項に記載の設計法によって構築されたアミノ酸配列をコードする核酸を用意するステップ;
     (II)前記核酸を発現させるステップ、及び
     (III)発現産物を回収するステップ。
    A method for preparing a mutant enzyme comprising the following steps (I) to (III):
    (I) preparing a nucleic acid encoding the amino acid sequence of SEQ ID NO: 3 or 4, or the amino acid sequence constructed by the design method according to any one of claims 19 to 22;
    (II) expressing the nucleic acid; and (III) recovering the expression product.
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CN115181734A (en) * 2022-08-29 2022-10-14 上海茵肽信息科技有限公司 Novel glucose oxidase with high thermal stability based on saturation mutation and composite evaluation design

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