WO2015148863A2 - Crispr/cas-related methods and compositions for treating sickle cell disease - Google Patents

Crispr/cas-related methods and compositions for treating sickle cell disease Download PDF

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WO2015148863A2
WO2015148863A2 PCT/US2015/022856 US2015022856W WO2015148863A2 WO 2015148863 A2 WO2015148863 A2 WO 2015148863A2 US 2015022856 W US2015022856 W US 2015022856W WO 2015148863 A2 WO2015148863 A2 WO 2015148863A2
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nucleic acid
nucleotides
domain
molecule
targeting domain
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WO2015148863A3 (en
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Ari E. FRIEDLAND
Morgan L. MAEDER
G. Grant Welstead
David A. Bumcrot
Cecilia COTTA-RAMUSINO
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Editas Medicine, Inc.
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Priority to US15/129,367 priority Critical patent/US11242525B2/en
Priority to EP21170121.4A priority patent/EP3981876A1/en
Priority to EP15715937.7A priority patent/EP3122880B1/en
Publication of WO2015148863A2 publication Critical patent/WO2015148863A2/en
Publication of WO2015148863A3 publication Critical patent/WO2015148863A3/en
Priority to US17/666,390 priority patent/US20230026726A1/en

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    • C12N2320/34Allele or polymorphism specific uses

Definitions

  • the invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Sickle Cell Disease (SCD).
  • SCD Sickle Cell Disease
  • SCD Sickle Cell Disease
  • SCA Sickle Cell Anemia
  • SCD is caused by a mutation in the beta-globin (HBB) gene.
  • HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, G gamma chain.
  • the alpha-globin gene is located on chromosome 16.
  • a point mutation e.g., GAG GTG
  • Beta hemoglobin chains with this mutation are expressed as HbS.
  • the disease is inherited in an autosomal recessive manner, so that only patients with two HbS alleles have SCD. Subjects who have sickle cell trait (are heterozygous for HbS) only display a phenotype if they are severely dehydrated or oxygen deprived.
  • Hb Normal adult hemoglobin
  • SCD normal adult hemoglobin
  • the valine at position 6 of the beta-chain is hydrophobic and causes a change in conformation of the beta-globin protein when it is not bound to oxygen.
  • HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs) found in SCD.
  • Sickle shape RBCs cause multiple manifestations of disease, which include, e.g., anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome.
  • the disease has varous manifestations, e.g., vaso-occlusive crisis, splenic sequestration crisis and anemia.
  • Subjects may also suffer from acute chest crisis and infarcts of extremities, end organs and central nervous system. Treatment includes, e.g., hydration, transfusion and analgesics.
  • Treatment of SCD also includes, e.g., the use of hydroxyurea, supplementation with folic acid, and penicillin prophylaxis during childhood. Bone marrow transplants have been demonstrated to cure SCD.
  • SCD Sickle Cell Disease
  • SCA Sickle Cell Anemia
  • Hb normal hemoglobin
  • HBB beta-globin
  • GAG ⁇ GTG point mutation
  • HbF sickle hemoglobin
  • Methods and compositions disclosed herein provide a number of approaches for treating SCD. As is discussed in more detail below, methods described herein provide for treating SCD by correcting a target position in the HBB gene to provide corrected, or functional, e.g., wild type, beta-globin. Methods and compositions discussed herein can be used to treat or prevent SCD by altering the BCLllA gene (also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF). BCLllA encodes a zinc-finger protein that is involved in the regulation of globin gene expression.
  • BCLllA also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF.
  • BCLllA encodes a zinc-finger protein that is involved in the regulation of globin gene
  • the levels of gamma globin can be increased.
  • Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating SCD disease phenotypes.
  • methods and compositions discussed herein provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • HBB gene also known as beta- globin and CD113t-C
  • SCD SCD-associated hypoxia-associated hyperplasia
  • the target position is E6, e.g., E6V, in the HBB gene.
  • SCD target point position refers to a target position in the HBB gene, typically a single nucleotide, which, if mutated, can result in a protein having a mutant amino acid and give rise to SCD.
  • the SCD target position is the target position at which a change can give rise to an E6 mutant protein, e.g., a protein having an E6V substitution.
  • E6 mutant protein e.g., E6V mutant protein
  • the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a deletion, in the HBB gene that gives rise to SCD.
  • a mutation at an SCD target point position in the HBB gene is corrected, e.g., by homology directed repair (HDR), as described herein.
  • HDR homology directed repair
  • BCLllA gene to treat or prevent SCD by targeting the BCLllA gene, e.g., coding or non-coding regions of the BCLllA gene.
  • Altering the BCLllA gene herein refers to reducing or eliminating (1) BCLllA gene expression, (2) BCLllA protein function, or (3) the level of BCLllA protein.
  • the coding region e.g., an early coding region
  • a non-coding sequence e.g., an enhancer region, a promoter region, an intron, 5'UTR, 3'UTR, or polyadenylation signal
  • the method provides an alteration that comprises disrupting the BCLllA gene by the insertion or deletion of one or more nucleotides mediated by Cas9 (e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase) as described below.
  • Cas9 e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase
  • This type of alteration is also referred to as "knocking out" the BCLllA gene.
  • the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCLllA gene and is mediated by enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described below.
  • This type of alteration is also referred to as "knocking down" the BCLllA gene.
  • the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent SCD by knocking out one or both alleles of the BCLllA gene.
  • the coding region e.g., an early coding region
  • a non-coding region of the BCLllA gene e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal
  • an enhancer region e.g., a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal
  • an enhancer e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer
  • BCLllA erythroid enhancer comprises an approximatel2.4 kb fragment of BCLllA intron2, located between approximate +52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52kb to TSS+64.4kb, see Fig. 10). It's also referred to herein as chromosome 2 location 60,716,189- 60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly).
  • Deoxyribonuclease I hypersensitive sites TSS+62kb, TSS+58kb and TSS+55kb are located in this region.
  • Deoxyribonuclease I sensitivity is a marker for gene regulatory elements. While not wishing to be bound by theory, it's believed that deleting the ehancer region (e.g.,
  • TSS+52kb to TSS+64.4kb may reduce or eliminate BCLllA expression in erythroid precursors which leads to gamma globin derepression while sparing BCLllA expression in nonerythoroid lineages.
  • the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1- hypersensitivie sites (DHS).
  • DHS DNase 1- hypersensitivie sites
  • the method provides an alteration that comprises an insertion or deletion of one or more nucleotides.
  • a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9).
  • NHEJ non-homologous end joining
  • eaCas9 enzymatically active Cas9
  • a targeted knockout approach alters the BCLllA gene.
  • a targeted knockout approach reduces or eliminates expression of functional BCLllA gene product.
  • targeting affects one or both alleles of the BCLllA gene.
  • an enhancer disruption approach reduces or eliminates expression of functional BCLllA gene product in the erythroid lineage.
  • SCD target knockout position refers to a position in the BCLllA gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in reduction or elimination of expression of functional BCLllA gene product.
  • the position is in the BCLllA coding region, e.g., an early coding region.
  • the position is in the BCLllA non-coding region, e.g., an enhancer region.
  • methods and compositions discussed herein provide for altering (e.g., knocking out) the BCLllA gene.
  • knocking out the BCLllA gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCLllA gene, or (2) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCLllA gene,
  • the SCD target knockout position is altered by genome editing using the CRISPR/Cas9 system.
  • the SCD target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ- mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the SCD target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCLllA gene.
  • the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
  • a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule.
  • a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
  • a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule.
  • the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • two double strand breaks are introduced to flank the erythroid enhancer at the in the BCLllA gene (one 5' and the other one 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two double strand breaks
  • the breaks, i.e., two double strand breaks can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks are introduced to flank the erythroid enhancer in the BCLllA gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an
  • the breaks are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites.
  • the breaks e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks e.g., two pairs of single strand breaks
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two pairs of single strand breaks
  • the breaks e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent SCD by knocking down one or both alleles of the BCLllA gene.
  • the coding region of the BCLllA gene is targeted to alter the gene.
  • a non-coding region e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal
  • the promoter region of the BCLllA gene is targeted to knock down the expression of the BCLllA gene.
  • a targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCLllA gene.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • eiCas9 enzymatically inactive Cas9
  • chromatin modifying protein e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • SCD target knockdown position refers to a position, e.g., in the
  • BCLllA gene which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCLllA gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCLllA promoter sequence. In an embodiment, a position in the promoter sequence of the BCLllA gene is targeted by an enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described herein.
  • eiCas9 enzymatically inactive Cas9
  • one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a SCD target knockdown position to reduce, decrease or repress expression of the BCLllA gene.
  • SCD target position refers to any of an SCD target point position, SCD target knockout position, or SCD target knockdown position, as described herein.
  • a gRNA molecule e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the HBB gene or BCL11A gene.
  • the two or more cleavage events may be made by the same or different Cas9 proteins.
  • a single Cas9 nuclease may be used to create both double strand breaks.
  • a single Cas9 nickase may be used to create the two or more single strand breaks.
  • two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
  • the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule.
  • the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
  • the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered.
  • the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D.
  • the targeting domain is selected from those in Tables 1A-1D.
  • the targeting domain is:
  • the targeting domain of each guide RNA is selected from one of Tables 1A-1D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13D.
  • the targeting domain is selected from those in Tables 13A-13D.
  • the targeting domain is:
  • the targeting domain of each guide RNA is selected from one of Tables 13A-13D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C. In an embodiment, the targeting domain is selected from those in Tables 14A-14C.
  • each guide RNA is selected from one of Tables 14A-14C.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 24A-24D. In an embodiment, the targeting domain is selected from those in Tables 24A-24D.
  • the targeting domain of each guide RNA is selected from one of Tables 24A-24D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 25A-25B. In an embodiment, the targeting domain is selected from those in Tables 25A-25B.
  • the targeting domain of each guide RNA is selected from one of Tables 25A-25B.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 26. In an embodiment, the targeting domain is selected from those in Table 26.
  • the targeting domain of each guide RNA is selected from Table 26.
  • a position in the coding region, e.g., the early coding region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2F.
  • the targeting domain is selected from those in Tables 2A-2F.
  • the targeting domain is:
  • GCUUUUUUCAUCUCGAU (SEQ ID NO: 493);
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Tables 2A-2F.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 4A-4E.
  • the targeting domain is selected from those in Table 4A-4E.
  • the targeting domain is:
  • GAGCUCCCAACGGGCCG SEQ ID NO: 3074
  • GAUAAACAAUCGUCAUCCUC SEQ ID NO: 3076
  • GAUGCCAACCUCCACGGGAU SEQ ID NO: 3077
  • GCAGAAUAUGCCCCGCA (SEQ ID NO: 3078);
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 4A-4E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 5A-5E. In an embodiment, the targeting domain is selected from those in Table 5A-5E.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 5A-5E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 6A-6B. In an embodiment, the targeting domain is selected from those in Table 6A-6B.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 6A-6B.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 15A-15D. In an embodiment, the targeting domain is selected from those in Table 15A-15D.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 15A-15D.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 16A-16E. In an embodiment, the targeting domain is selected from those in Table 16A-16E.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 16A-16E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 17A-17B. In an embodiment, the targeting domain is selected from those in Table 17A-17B.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 17A-17B.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D.
  • the targeting domain is selected from those in Tables 7A-7D.
  • the targeting domain is: GAAAAUACUUACUGUACUGC (SEQ ID NO: 4835);
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 7A-7D.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8D. In an embodiment, the targeting domain is selected from those in Tables 8A-8D.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 8A-8D.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 9. In an embodiment, the targeting domain is selected from those in Table 9.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 9.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21E. In an embodiment, the targeting domain is selected from those in Tables 21A-21E.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 21A-21E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E. In an embodiment, the targeting domain is selected from those in Tables 22A-22E.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 22A-22E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23C. In an embodiment, the targeting domain is selected from those in Tables 23A-23C.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 23A-23C.
  • the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCLllA gene.
  • the targeting domain is configured to target the promoter region of the BCL11A gene to block transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase.
  • One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2,
  • a targeting domain sequence from any one of Tables 3A-3C.
  • the targeting domain is selected from those in Tables 3A-3C.
  • the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Tables 3A-3C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2,
  • a targeting domain sequence from any one of Tables 10A-10D.
  • the targeting domain is selected from those in Tables 10A-10D.
  • the targeting domain is:
  • GCGGGCGGACGACGGCU (SEQ ID NO: 4987).
  • each guide RNA is selected from one of Tables 10A-10D.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11D. In an embodiment, the targeting domain is selected from those in Tables 11A-11D.
  • each guide RNA is selected from one of Tables 11A-11D.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 12. In an embodiment, the targeting domain is selected from those in Table 12.
  • each guide RNA is selected from Table 12.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18C. In an embodiment, the targeting domain is selected from those in Tables 18A-18C.
  • each guide RNA is selected from one of Tables 18A-18C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is selected from those in Tables 19A-19E.
  • each guide RNA is selected from one of Tables 19A-19E.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is selected from those in Tables 20A-20C.
  • each guide RNA is selected from one of Tables 20A-20C.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence selected from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A- 10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A- 6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A- 17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the targeting domain which is complementary with the BCL11A gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides. In an embodiment, the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the gRNA e.g., a gRNA comprising a targeting domain, which is complementary with the HBB gene or BCL11A gene, is a modular gRNA.
  • the gRNA is a unimolecular or chimeric gRNA.
  • HBB gRNA as described herein may comprise from 5' to 3' : a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a "core domain”, and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain”, and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • the proximal domain and tail domain are taken together as a single domain.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a cleavage event e.g., a double strand or single strand break
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kriippel- associated box
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N- terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • nucleic acid e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with an SCD target position, in the HBB gene or BCL11A gene as disclosed herein.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A- 21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9,
  • the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A- ID, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A- 13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A- 22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA.
  • the nucleic acid encodes a chimeric gRNA.
  • the nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a gRNA comprising from 5' to 3'
  • proximal domain and tail domain are taken together as a single domain.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the HBB gene or BCLllA gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kriippel- associated box
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCLllA gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further comprises (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene or BCLllA gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene or BCLllA gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene or BCLllA gene.
  • a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCLllA gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCLllA gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • the nucleic acid encodes a second gRNA molecule.
  • the second gRNA is selected to target the same SCD target position as the first gRNA molecule.
  • the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule.
  • the third gRNA molecule and the fourth gRNA molecule are selected to target the same SCD target position as the first and/or second gRNA molecules.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A- 15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A- 24D, 25A-25B, 26, or 31.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A- 25B, 26, or 31.
  • a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20
  • the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A
  • the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA.
  • the nucleic acid encoding a second gRNA is a chimeric gRNA.
  • the third and/or fourth gRNA may be a modular gRNA or a chimeric gRNA.
  • a nucleic acid may encode a second, a third, and/or a fourth gRNA comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • proximal domain complementarity domain
  • tail domain tail domain
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the nucleic acid when the HBB gene is corrected, e.g., by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene; and further may comprise (d) a template nucleic acid (in an embodiment where an ex
  • a mutation in the HBB gene is corrected, e.g., by HDR, using an exogenously provided template nucleic acid.
  • the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In an embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
  • the template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 27.
  • the template nucleic acid comprises a 5' homology arm, e.g., a 5' homology arm from Table 27.
  • the template nucleic acid comprises a 3' homology arm, e.g., a 3' homology arm from Table 27.
  • a mutation in the HBB gene is corrected, e.g., by HDR, without using an exogenously provided template nucleic acid. While not wishing to be bound by theory, it is believed that an endogenous region of homology can mediate HDR-based correction.
  • alteration of the target sequence occurs by HDR with an endogenous genomic donor sequence.
  • the endogenous genomic donor sequence is located on the same chromosome as the target sequence.
  • the endogenous genomic donor sequence is located on a different chromosome from the target sequence.
  • the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with an endogenous genomic donor sequence include, e.g., a point mutation at E6, e.g., E6V.
  • a nucleic acid may comprise (a) a sequence encoding a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, and (b) a sequence encoding a Cas9 molecule.
  • nucleic acid molecule e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
  • first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules may be AAV vectors.
  • the nucleic acid may further comprise (c) a sequence that encodes a second, third and/or fourth gRNA molecule as described herein.
  • the nucleic acid comprises (a), (b) and (c).
  • Each of (a) and (c) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno- associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • (a) and (c) are on different vectors.
  • a first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • a second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules are AAV vectors.
  • each of (a), (b), and (c) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • one of (a), (b), and (c) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • each of (a), (b) and (c) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector.
  • vectors e.g., different viral vectors, e.g., different AAV vector.
  • (a) may be on a first nucleic acid molecule
  • (c) on a third nucleic acid molecule may be AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
  • the nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein.
  • the nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein.
  • the promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
  • nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
  • compositions comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, as described herein.
  • the composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein.
  • a composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein.
  • a composition of (a), (b) and (c) may further comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used).
  • the composition is a pharmaceutical composition.
  • the Compositions described herein, e.g., pharmaceutical compositions described herein can be used in treating SCD in a subject, e.g., in accordance with a method disclosed herein.
  • a method of altering a cell comprising contacting said cell with: (a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets HBB gene or BCL11A gene, e.g., a gRNA; and optionally, (d) a template nucleic acid, as described herein.
  • the method comprises contacting said cell with (a) and (b).
  • the method comprises contacting said cell with (a), (b), and (c).
  • the method comprises contacting said cell with (a), (b), (c) and (d).
  • the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the cell.
  • the gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1D, 2A-2F,
  • the method comprises contacting a cell from a subject suffering from or likely to develop SCD.
  • the cell may be from a subject having a mutation at an SCD target position in the HBB gene or a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • the cell being contacted in the disclosed method is an erythroid cell.
  • the contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In another embodiment, the contacting step may be performed in vivo.
  • the method of altering a cell as described herein comprises acquiring knowledge of the sequence at an SCD target position in said cell, prior to the contacting step.
  • Acquiring knowledge of the sequence at an SCD target position in the cell may be by sequencing the HBB gene or BCL11A gene, or a portion of the HBB gene or BCL11A gene.
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
  • a nucleic acid e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes (a) and optionally a second, third and/or fourth gRNA of (c).
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a method of treating or preventing a subject suffering from or likely to develop SCD e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
  • a gRNA that targets the HBB gene or BCL11A gene e.g., a gRNA disclosed herein;
  • a Cas9 molecule e.g., a Cas9 molecule disclosed herein; and optionally, (c)(i) a second gRNA that targets the HBB gene or BCL11A gene, e.g., a second gRNA disclosed herein, and
  • the method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid disclosed herein.
  • a template nucleic acid in an embodiment where an exogenous template is used, e.g., a template nucleic acid disclosed herein.
  • a template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject.
  • the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the subject (or a cell from the subject).
  • contacting comprises contacting with (a) and (b).
  • contacting comprises contacting with (a), (b), and (c)(i).
  • contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
  • contacting comprises contacting with (a), (b), (c)(i) and (d).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (d).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and
  • the gRNA of (a) or (c) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A- 3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B
  • the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject. In an embodiment, the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject by sequencing the HBB gene or BCL11A gene or a portion of the HBB gene or BCL11A gene.
  • the method comprises correcting a mutation at an SCD target position in the HBB gene.
  • the method comprises correcting a mutation at an SCD target position in the HBB gene by HDR.
  • the method comprises introducing a mutation at an SCD target position in the BCL11A gene.
  • the method comprises introducing a mutation at an SCD target position in the BCL11A gene by NHEJ.
  • a Cas9 of (b) at least one guide RNA, e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intravenous delivery of
  • the cell of the subject is contacted in vivo by intramuscular delivery of
  • the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • IBM intra-bone marrow
  • contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a),
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a),
  • contacting comprises delivering to said subject said Cas9 molecule of
  • (b) as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
  • the method comprises (1) introducing a mutation at an SCD target position by
  • a Cas9 of (b) and at least one guide RNA are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a populations of cells from a subject is contacted ex vivo with (a), (b) and optionally (c) to correct the E6V mutation in the HBB gene and a second population of cells from the subject is contacted ex vivo with (a), (b) and optionally (c) to introduce a mutation in the BCL11A gene to knockout the BCL11A gene.
  • a mixture of the two cell populations may be returned to the subject's body to treat or prevent SCD.
  • a cell of the subject is contacted is in vivo with (a), (b) and optionally
  • the cell of the subject is contacted in vivo by intravenous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • IBM intra-bone marrow
  • contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the subject the gRNA of (a), as an
  • RNA optionally said second, third and/or fourth gRNA of (c), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a reaction mixture comprising a gRNA, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop SCD, or a subject having a mutation at an SCD target position in the HBB gene, or a cell from a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • kits comprising, (a) gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
  • a Cas9 molecule e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
  • a second gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
  • a third gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
  • a fourth gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
  • a template nucleic acid in an embodiment where an exogenous template is used, e.g., a template nucleic acid described herein.
  • the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject.
  • the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule.
  • the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule.
  • the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage.
  • the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA. While not wishing to be bound by theory, it is believed that altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
  • compositions, reaction mixtures and kits, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
  • a governing gRNA molecule e.g., a governing gRNA molecule disclosed herein.
  • Figs. 1A-1I are representations of several exemplary gRNAs.
  • Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
  • Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
  • Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
  • Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
  • Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
  • Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
  • Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S.
  • thermophilus SEQ ID NOS: 50-53, respectively, in order of appearance.
  • Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules.
  • Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
  • Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
  • Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B”.
  • the HNH-like domain is boxed and indicated by a "G”.
  • Sm S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4).
  • Motif this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance).
  • the last line of Fig. 3B identifies 4 highly conserved residues.
  • Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance).
  • SEQ ID NOS: 104-177 sequence outliers removed.
  • the last line of Fig. 4B identifies 3 highly conserved residues.
  • Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
  • Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance).
  • SEQ ID NOS: 253-302 sequence outliers removed.
  • the last line of Fig. 6B identifies 3 highly conserved residues.
  • Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (N. meningitidis).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B”.
  • the HNH-like domain is boxed and indicated with a "G”.
  • Sp S. pyogenes
  • Nm N. meningitidis.
  • Motif this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an "R” is an SV40 NLS; sequence indicated as “G” is an HA tag; and sequence indicated by an "O” is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF).
  • Figs. 9A and 9B are schematic representations of the domain organization of S. pyogenes Cas 9.
  • Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes).
  • Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
  • Fig. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCLllA intron 2.
  • Three erythroid DHSs are labled as distance in kilobases from BCLllA TSS (+62, +58 and +55). BCLllA transcription is from right to left.
  • Fig. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCLllA locus.
  • Figs. 12A-12B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCL11A-2983W and BCL11A-2981W.
  • Fig. 12A depicts schematic of DNA sequence recognized by BCL11 A-2983W and BCL11A-2981W, which flanks the putative erythroid enhancer elements.
  • Fig. 12B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • Figs. 13A-13B depicts detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
  • Fig. 13A depicts Schematic of DNA sequence recognized by BCL11 A-2995W and
  • Fig. 13B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • Fig. 14 depicts a scheme of the pair 8/15 of gRNAs surrounding the sickle mutation in combination with a Cas9 nickase (DIOA or N863A). The nickases are shown as the grey ovals.
  • Fig. 15 depicts the percentages of total editing event after a wildtype Cas9 or a Cas9 nickase (DIOA or N863A). A preprentation of at least three independent experiments for each condition is shown.
  • Fig. 16A depicts the frequency of deletions a wildtype Cas9 or a Cas9 nickase (DIOA or
  • FIG. 16B depicts the frequency distribution of the length of deletions using a wildtype Cas9 and gRNA 8 (similar results have been obtained with gRNA 15).
  • Fig. 16C depicts the frequency distribution of the length of deletions using a Cas9 nickase (DIOA) with gRNAs 8/15 (similar results have been obtained using Cas9 N863A).
  • DIOA Cas9 nickase
  • Fig. 17A depicts the frequency of gene conversion a wildtype Cas9 or a Cas9 nickase
  • Fig. 17B shows a scheme representing the region of similarity between the HBB and HBD loci.
  • Fig. 18 depicts the frequency of different lengths of HBD sequences that were incorporated into the HBB locus.
  • Fig. 19A depicts the frequency of insertions using a wildtype Cas9 or a Cas9 nickase (DIOA or N863A). A representation of at least three independent experiments for each condition is shown.
  • Fig. 19B depicts examples of common reads observed in U20S cells electroporated with plasmid encoding Cas9 N863 and gRNA 8/15 pair.
  • the HBB reference is shown on the top.
  • Fig. 20A is a schematic representation of the donor template.
  • Fig. 20B depicts the frequency of HDR using a wildtype Cas9 or a Cas9 nickase (DIOA or N863A).
  • Fig. 20C depicts different forms of nonors and there contribution to HDR.
  • Fig. 21 depicts genome editing of the HBB locus in bone marrow leukemia K562 hematopoietic cells after electroporation of Cas9 protein complexed to HBB gRNAs 8 and 15 (RNP) or Cas9 mRNA co-delivered with HBB gRNAs 8 and 15 (RNA).
  • Alt-HDR or “alternative HDR”, or alternative homology-directed repair, as used herein, refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid).
  • Alt-HDR is distinct from canonical HDR in that the process utilizes different pathways from canonical HDR, and can be inhibited by the canonical HDR mediators, RAD51 and BRCA2.
  • alt-HDR uses a single- stranded or nicked homologous nucleic acid for repair of the break.
  • Canonical HDR refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid).
  • Canonical HDR typically acts when there has been significant resection at the double strand break, forming at least one single stranded portion of DNA.
  • HDR typically involves a series of steps such as recognition of the break, stabilization of the break, resection, stabilization of single stranded DNA, formation of a DNA crossover intermediate, resolution of the crossover intermediate, and ligation. The process requires RAD51 and BRCA2, and the homologous nucleic acid is typically double-stranded.
  • HDR canonical HDR and alt-HDR.
  • Domain is used to describe segments of a protein or nucleic acid.
  • Calculations of homology or sequence identity between two sequences are performed as follows.
  • the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes).
  • the optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5.
  • the amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared.
  • Governing gRNA molecule refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence.
  • a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the HBB or BCL11A gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b).
  • a nucleic acid molecule that encodes a CRISPR/Cas component comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component.
  • the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the HBB or BCL11A gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a
  • a CRISPR/Cas system component e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule.
  • the governing gRNA e.g., a Cas9-targeting governing gRNA molecule, or a target gene gRNA- targeting governing gRNA molecule, limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting.
  • a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a governing gRNA reduces off-target or other unwanted activity. In an embodiment, a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
  • Modulator refers to an entity, e.g., a drug, that can alter the activity
  • modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non- covalent bond, e.g., the attachment of a moiety, to the subject molecule.
  • a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule.
  • a modulator can increase, decrease, initiate, or eliminate a subject activity.
  • Large molecule refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
  • polypeptide refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
  • Non-homologous end joining refers to ligation mediated repair and/or non-template mediated repair including canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
  • cNHEJ canonical NHEJ
  • altNHEJ alternative NHEJ
  • MMEJ microhomology-mediated end joining
  • SSA single-strand annealing
  • SD-MMEJ synthesis-dependent microhomology-mediated end joining
  • a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule.
  • Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S.
  • the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared.
  • the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
  • “Small molecule”, as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
  • “Subject”, as used herein, may mean either a human or non-human animal. The term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats). In an embodiment, the subject is a human. In another embodiment, the subject is poultry.
  • Treatment mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
  • Prevent means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
  • X as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR.
  • mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells.
  • the method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • one HBB allele is repaired in the subject.
  • both HBB alleles are repaired in the subject.
  • the subject can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • methods and compositions discussed herein provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • the method provides for the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V.
  • breaks e.g., single strand breaks or double strand breaks
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration in the HBB gene, e.g., an alternation associated with HDR.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • a second, third and/or fourth gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration associated with HDR in the HBB gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300,
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • a single strand break is accompanied by an additional single strand break, positioned by a second, third and/or fourth gRNA molecule, as discussed below.
  • the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in an alteration of the target position in the HBB gene, e.g., E6V.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second, third and/or fourth gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucle
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100
  • a mutation in the HBB gene e.g., E6V is corrected using an exogenously provided template nucleic acid, e.g., by HDR.
  • a mutation in the HBB gene e.g., E6V is corrected without using an exogenously provided template nucleic acid, e.g., by HDR.
  • alteration of the target sequence occurs with an endogenous genomic donor sequence, e.g., by HDR.
  • the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene.
  • a mutation in the HBB gene is corrected by an endogenous genomic donor sequence (e.g, an HBD gene).
  • an eaCas9 molecule e.g., an eaCas9 molecule described herein, is used.
  • the eaCas9 molecule comprises HNH- like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase.
  • the eaCas9 molecule comprises a mutation at D10 (e.g., D10A).
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at H840 (e.g., H840A) or N863 (e.g., N863A).
  • BCL11A One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression.
  • BCL11A plays a role in the regulation of ⁇ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of ⁇ globin expression. The BCL11A gene product is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in ⁇ globin expression. In addition, it appears that the splicing of the BCL11A mRNA is developmentally regulated.
  • BCL11A-S and BCL11A-XS are primary expressed, while in adult cells, the longer BCL11A-L and BCL11A-XL mRNA variants are predominantly expressed.
  • BCL11A protein appears to interact with the ⁇ globin locus to alter its conformation and thus its expression at different developmental stages.
  • BCL11A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of ⁇ globin and HbF production.
  • Altering the SCD target position in the BCL11A gene is achieved, e.g., by:
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • deletion e.g., NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer of the BCL11A gene, or
  • methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCL11A gene.
  • methods described herein introduce two or more breaks to flank the erythroid enhancer of SCD target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer.
  • methods described herein comprises knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9- fusion protein by targeting the promoter region of SCD target knockdown position. All methods described herein result in alteration of the BCL11A gene. NHEJ-mediated introduction of an indel in close proximity to or within the early coding region of the SCD knockout position
  • the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the SCD target knockout position (e.g., the early coding region) of the BCL11A gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the SCD target knockout position, such that the break-induced indel could be reasonably expected to span the SCD target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the SCD target knockout position.
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a SCD target knockout position.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of a SCD target knockout position in the BCL11A gene.
  • a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • the breaks e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a SCD target knockout position in the BCL11A gene.
  • the breaks e.g., double strand or single strand breaks
  • the breaks are positioned on one side, e.g., upstream or downstream, of a nucleotide of a SCD target knockout position in the BCLllA gene.
  • a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below.
  • the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCLllA gene.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCLllA gene.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a SCD target knockout position in the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300,
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two double strand breaks— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the first double strand break is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to
  • the second double strand break is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10).
  • the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two double strand breaks
  • the first double strand break may be positioned as follows:
  • the second double strand break to be paired with the first double strand break may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the first double strand break may be positioned in the BCLllA gene:
  • the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the two sets of breaks either the double strand break or the pair of single strand breaks
  • the SCD target knockdown position e.g., the erythroid enhancer
  • the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10).
  • the two sets of breaks (either the double strand break or the pair of single strand breaks) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
  • the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCLllA gene:
  • the two sets of breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCLllA gene.
  • the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10).
  • the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two pairs of single strand breaks
  • the first pair of single strand breaks may be positioned as follows:
  • the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the pair of single strand breaks may be positioned in the BCLllA gene: (1) between TSS+0.75kb to TSS+lOkb,
  • the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
  • a targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • one or more eiCas9s may be used to block binding of one or more endogenous transcription factors.
  • an eiCas9 can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene.
  • One or more eiCas9s fused to one or more chromatin modifying proteins may be used to alter chromatin status.
  • Methods and compositions discussed herein may be used to alter the expression of the BCLllA gene to treat or prevent SCD by targeting a promoter region of the BCLllA gene.
  • the promoter region e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCLllA gene.
  • the methods and compositions discussed herein may be used to knock down the BCLllA gene to treat or prevent SCD by targeting 0.5 kb upstream or downstream of the TSS.
  • a targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • eiCas9 enzymatically inactive Cas9
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR.
  • mutant HBB allele(s) are corrected and restored to wild type state.
  • correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells.
  • the method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • one HBB allele is repaired in the subject.
  • both HBB alleles are repaired in the subject.
  • the subjects can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • the BCL11A gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
  • HbF fetal hemoglobin
  • Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues.
  • Subjects with beta- thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
  • knockout or knockdown of the BCL11A gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression.
  • BCL11A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin.
  • Knockout of the BCL11A gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta- thalassemia (HbF will form tetramers with hemoglobin alpha).
  • the BCL11A knockout or knockdown is targeted specifically to cells of the erythroid lineage.
  • BCL11A knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function.
  • erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells.
  • erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
  • the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with
  • the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells. For example, subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy. In an embodiment, the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
  • Knockdown or knockout of one or both BCL11A alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
  • the method comprises initiating treatment of a subject prior to disease onset.
  • the method comprises initiating treatment of a subject after disease onset.
  • the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of SCD. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
  • the method comprises initiating treatment of a subject in an advanced stage of disease.
  • the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
  • the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
  • the method comprises initiating treatment of a subject who is transfusion-dependent.
  • the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
  • the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
  • a cell is treated, e.g., ex vivo.
  • an ex vivo treated cell is returned to a subject.
  • allogenic or autologous bone marrow or erythroid cells are treated ex vivo.
  • an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject.
  • an erythroid cell e.g., an autologous erythroid cell
  • an autologous stem cell is treated ex vivo and returned to the subject.
  • the modified HSCs are administered to the patient following no myeloablative pre-conditioning.
  • the modified HSCs are administered to the patient following mild myeloablative preconditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs.
  • the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
  • the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
  • IBM intra-bone marrow
  • the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
  • a parvovirus e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells.
  • two or more gRNA molecules are delivered.
  • a gRNA molecule refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid.
  • gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules).
  • a gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
  • Figs. 1A-1G Several exemplary gRNA structures, with domains indicated thereon, are provided in Figs. 1A-1G. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
  • a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from any of Tables 1A-1D, 2A- 2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A- 20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31; a first complementarity domain;
  • a modular gRNA comprises:
  • a first strand comprising, preferably from 5' to 3' ;
  • a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from Tables 1A-1D, 2A-2F, 3A-3C, 4A- 4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31; and
  • a second strand comprising, preferably from 5' to 3':
  • a tail domain optionally, a tail domain.
  • Figs. 1A-1G provide examples of the placement of targeting domains.
  • the targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid.
  • the targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid.
  • the uracil bases in the targeting domain will pair with the adenine bases in the target sequence.
  • the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain.
  • the core domain is fully complementary with the target sequence.
  • the targeting domain is 5 to 50 nucleotides in length.
  • the strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • Figs. 1A-1G provide examples of first complementarity domains.
  • the first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the first complementarity domain is 5 to 30 nucleotides in length.
  • the first complementarity domain is 5 to 25 nucleotides in length. In an
  • the first complementary domain is 7 to 25 nucleotides in length. In an
  • the first complementary domain is 7 to 22 nucleotides in length. In an
  • the first complementary domain is 7 to 18 nucleotides in length.
  • the first complementary domain is 7 to 15 nucleotides in length.
  • the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length.
  • the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of linking domains.
  • a linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA.
  • the linking domain can link the first and second complementarity domains covalently or non-covalently.
  • the linkage is covalent.
  • the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE.
  • the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain.
  • the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
  • linking domains are suitable for use in unimolecular gRNA molecules.
  • Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length.
  • a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length.
  • a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length.
  • a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain.
  • the linking domain has at least 50% homology with a linking domain disclosed herein.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A.
  • the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • Figs. 1A-1G provides examples of second complementarity domains.
  • the second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
  • the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length.
  • the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the 5' subdomain and the 3' subdomain of the first complementarity domain are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
  • the second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S.
  • aureus or S. thermophilus first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of proximal domains.
  • the proximal domain is 5 to 20 nucleotides in length.
  • the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
  • nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of tail domains.
  • the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length.
  • the tail domain nucleotides are from or share homology with sequence from the 5' end of a naturally occurring tail domain, see e.g., panels 4a or 5a of Fig. ID or Fig. IE.
  • the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
  • the tail domain is absent or is 1 to 50 nucleotides in length.
  • the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
  • the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription.
  • these nucleotides may be any nucleotides present before the 3' end of the DNA template.
  • these nucleotides may be the sequence UUUUUU.
  • alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
  • gRNA molecules The domains of gRNA molecules are described in more detail below.
  • the "targeting domain" of the gRNA is complementary to the "target domain” on the target nucleic acid.
  • the strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid.
  • Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
  • the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/- 5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
  • the targeting domain is 20+/-5 nucleotides in length.
  • the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10,
  • the targeting domain is 30+/- 10 nucleotides in length.
  • the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the targeting domain has full complementarity with the target sequence.
  • the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
  • the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
  • the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides”), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • non-complementary nucleotides two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
  • the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the targeting domain can be modified with a phosphorothioate, or other
  • a nucleotide of the targeting domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a modification at the 2' position on ribose
  • 2- acetylation e.g., a 2' methylation
  • the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in a system in Section IV.
  • the candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain.
  • 1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
  • the targeting domain comprises, preferably in the 5' ⁇ 3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
  • the “core domain” of the targeting domain is complementary to the “core domain target” on the target nucleic acid.
  • the core domain comprises about 8 to about 13 nucleotides from the 3' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
  • the core domain and targeting domain are independently, 6 +1-2, 1+1-
  • the core domain and targeting domain are independently, 10+/-2 nucleotides in length.
  • the core domain and targeting domain are independently, 10+/-4 nucleotides in length.
  • the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18 nucleotides in length.
  • the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
  • the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
  • the core domain is complementary with the core domain target.
  • the core domain has exact complementarity with the core domain target.
  • the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the "secondary domain" of the targeting domain of the gRNA is complementary to the "secondary domain target" of the target nucleic acid.
  • the secondary domain is positioned 5' to the core domain.
  • the secondary domain is absent or optional.
  • the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 11 to 16 nucleotides in length.
  • the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 10 to 15 nucleotides in length.
  • the targeting domain is 22 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 9 to 14 nucleotides in length.
  • the targeting domain is 21 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 8 to 13 nucleotides in length.
  • the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 7 to 12 nucleotides in length.
  • the secondary domain is 6 to 11 nucleotides in length. In an embodiment, if the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 5 to 10 nucleotides in length.
  • the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 4 to 9 nucleotides in length.
  • the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 3 to 8 nucleotides in length.
  • the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or
  • the secondary domain is complementary with the secondary domain target.
  • the secondary domain has exact complementarity with the secondary domain target.
  • the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the core domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a core domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the secondary domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification from Section VIII.
  • a secondary domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
  • modifications from Section VIII) of the nucleotides of the secondary domain may differ.
  • (1) may be less than (2).
  • (1) may be greater than (2).
  • (1) and (2) may be the same, e.g., each may be free of modifications.
  • the first complementarity domain is complementary with the second complementarity domain.
  • the first domain does not have exact complementarity with the second complementarity domain target.
  • the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain.
  • 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region.
  • an unpaired, or loop-out, region e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain.
  • the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5' end of the second complementarity domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the first and second complementarity domains are:
  • the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
  • the first and second complementary domains independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the first and second complementary domains independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • first and second complementary domains independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • first and second complementary domains independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • complementary domains independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end.
  • first and second complementary domains independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the first and second complementary domains independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no nucleotide that is modified within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference first complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • first complementarity domain e.g., from Figs. 1A-1G.
  • the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference second complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • second complementarity domain e.g., from Figs. 1A-1G.
  • the duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
  • the first and second complementarity domains when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • first and second complementarity domains when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • first and second complementarity domains when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain.
  • the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • the 5' extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the 5' extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the 5' extension domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a modification at the 2' position on ribose
  • 2- acetylation e.g., a 2' methylation
  • the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the 5' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • Modifications in the 5' extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate 5' extension domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate 5' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
  • the Linking Domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus.
  • the linking domain is disposed between the first and second complementarity domains.
  • the two molecules are associated with one another by the complementarity domains.
  • the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
  • the linking domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
  • the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length. In an embodiment, the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
  • the linking domain is a covalent bond.
  • the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain.
  • the duplexed region can be 20+/-10 base pairs in length.
  • the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length.
  • the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
  • sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
  • the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the linking domain can be modified with a phosphorothioate, or other
  • a nucleotide of the linking domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated a system described in Section IV.
  • a candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
  • a reference linking domain e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
  • the proximal domain is 6 +1-2, 1+1-2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
  • the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
  • the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the proximal domain can be modified with a phosphorothioate, or other
  • a nucleotide of the proximal domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a modification at the 2' position on ribose
  • 2- acetylation e.g., a 2' methylation
  • the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A-1G.
  • a reference proximal domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • proximal domain or a proximal domain described herein, e.g., from Figs. 1A-1G.
  • the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
  • the tail domain is 20+/-5 nucleotides in length.
  • the tail domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
  • the tail domain is 25+/- 10 nucleotides in length.
  • the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
  • the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from
  • a nucleotide of the tail domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a modification at the 2' position on ribose
  • 2-acetylation e.g., a 2' methylation
  • the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8
  • the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the tail domain comprises a tail duplex domain, which can form a tail duplexed region.
  • the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length.
  • a further single stranded domain exists 3' to the tail duplexed domain.
  • this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
  • the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
  • a reference tail domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • tail domain or a tail domain described herein, e.g., from Figs. 1A-1G.
  • proximal and tail domain taken together comprise the following sequences:
  • AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
  • the tail domain comprises the 3' sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
  • the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
  • tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used. In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template if a T7 promoter is used.
  • the tail domain comprises variable 3' sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
  • the tail domain comprises variable 3' sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
  • Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
  • the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein; the linking domain is 1 to 5 nucleotides in length;
  • the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
  • the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
  • a targeting domain (which is complementary to a target nucleic acid);
  • a first complementarity domain e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 16 nucleotides e.g., 16 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 16 nucleotides in length
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 17 nucleotides
  • the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at leastl5, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 18 nucleotides e.g., 18 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 18 nucleotides in length
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 19 nucleotides
  • the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 20 nucleotides
  • the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides
  • the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,

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Abstract

CRISPR/CAS-related compositions and methods for treatment of Sickle Cell Disease (SCD) are disclosed.

Description

CRISPR/CAS-RELATED METHODS AND COMPOSITIONS FOR TREATING
SICKLE CELL DISEASE
REFERENCE TO RELATED APPLICATIONS
The present application claims the benefit of U.S. Provisional Application No.
61/970,588, filed March 26, 2014, and U.S. Provisional Application No. 62/084,487, filed November 25, 2014, the contents of each of which are hereby incorporated by reference in their entirety.
FIELD OF THE INVENTION
The invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Sickle Cell Disease (SCD).
BACKGROUND
Sickle Cell Disease (SCD), also known as Sickle Cell Anemia (SCA), is a common inherited hematologic disease. It affects 80,000-90,000 people in the United States. It is common in people of African descent and in Hispanic- Americans with the prevalence of SCD being 1 in 500 and 1 in 1,000, respectively.
SCD is caused by a mutation in the beta-globin (HBB) gene. HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, G gamma chain. The alpha-globin gene is located on chromosome 16. A point mutation (e.g., GAG GTG) results in the substitution of valine for glutamic acid at amino acid position 6 in exon 1 of the HBB gene. Beta hemoglobin chains with this mutation are expressed as HbS. The disease is inherited in an autosomal recessive manner, so that only patients with two HbS alleles have SCD. Subjects who have sickle cell trait (are heterozygous for HbS) only display a phenotype if they are severely dehydrated or oxygen deprived.
Normal adult hemoglobin (Hb) is composed of a tetramer made from two alpha-globin chains and two beta-globin chains. In SCD, the valine at position 6 of the beta-chain is hydrophobic and causes a change in conformation of the beta-globin protein when it is not bound to oxygen. HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs) found in SCD.
Sickle shape RBCs cause multiple manifestations of disease, which include, e.g., anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome. The disease has varous manifestations, e.g., vaso-occlusive crisis, splenic sequestration crisis and anemia. Subjects may also suffer from acute chest crisis and infarcts of extremities, end organs and central nervous system. Treatment includes, e.g., hydration, transfusion and analgesics.
Treatment of SCD also includes, e.g., the use of hydroxyurea, supplementation with folic acid, and penicillin prophylaxis during childhood. Bone marrow transplants have been demonstrated to cure SCD.
Thus, there remains a need for additional methods and compositions that can be used to treat SCD.
SUMMARY OF THE INVENTION
Methods and compositions discussed herein, provide for the treatment and prevention of
Sickle Cell Disease (SCD), also known as Sickle Cell Anemia (SCA). SCD is an inherited hematologic disease.
In healthy individuals, two beta-globin molecules pair with two alpha-globin molecules to form normal hemoglobin (Hb). In SCD, mutations in the beta-globin (HBB) gene, e.g., a point mutation (GAG→ GTG) that results in the substitution of valine for glutamic acid at amino acid position 6 of the beta-globin molecule, cause production of sickle hemoglobin (HbS). HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs). Sickle shaped RBCs give rise to multiple manifestations of disease, such as, anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome. Alpha-globin can also pair with fetal hemoglobin (HbF), which significantly moderates the severe anemia and other symptoms of SCD. However, the expression of HbF is negatively regulated by the BCL11A gene product.
Methods and compositions disclosed herein provide a number of approaches for treating SCD. As is discussed in more detail below, methods described herein provide for treating SCD by correcting a target position in the HBB gene to provide corrected, or functional, e.g., wild type, beta-globin. Methods and compositions discussed herein can be used to treat or prevent SCD by altering the BCLllA gene (also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF). BCLllA encodes a zinc-finger protein that is involved in the regulation of globin gene expression. By altering the BCLllA gene (e.g., one or both alleles of the BCLllA gene), the levels of gamma globin can be increased. Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating SCD disease phenotypes.
In one aspect, methods and compositions discussed herein, provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
Mutations in the HBB gene (also known as beta- globin and CD113t-C) have been shown to cause SCD. Mutations leading to SCD can be described based on their target positions in the HBB gene. In an embodiment, the target position is E6, e.g., E6V, in the HBB gene.
"SCD target point position", as used herein, refers to a target position in the HBB gene, typically a single nucleotide, which, if mutated, can result in a protein having a mutant amino acid and give rise to SCD. In an embodiment, the SCD target position is the target position at which a change can give rise to an E6 mutant protein, e.g., a protein having an E6V substitution.
While much of the disclosure herein is presented in the context of the mutation in the HBB gene that gives rise to an E6 mutant protein (e.g., E6V mutant protein), the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a deletion, in the HBB gene that gives rise to SCD.
While not wishing to be bound by theory, it is believed that, in an embodiment, a mutation at an SCD target point position in the HBB gene is corrected, e.g., by homology directed repair (HDR), as described herein.
In one aspect, methods and compositions discussed herein may be used to alter the
BCLllA gene to treat or prevent SCD, by targeting the BCLllA gene, e.g., coding or non-coding regions of the BCLllA gene. Altering the BCLllA gene herein refers to reducing or eliminating (1) BCLllA gene expression, (2) BCLllA protein function, or (3) the level of BCLllA protein. In an embodiment, the coding region (e.g., an early coding region) of the BCLllA gene is targeted for alteration. In an embodiment, a non-coding sequence (e.g., an enhancer region, a promoter region, an intron, 5'UTR, 3'UTR, or polyadenylation signal) is targeted for alteration.
In an embodiment, the method provides an alteration that comprises disrupting the BCLllA gene by the insertion or deletion of one or more nucleotides mediated by Cas9 (e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase) as described below. This type of alteration is also referred to as "knocking out" the BCLllA gene.
In another embodiment, the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCLllA gene and is mediated by enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described below. This type of alteration is also referred to as "knocking down" the BCLllA gene.
In an embodiment, the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent SCD by knocking out one or both alleles of the BCLllA gene. In an embodiment, the coding region (e.g., an early coding region) of the BCLllA gene, is targeted to alter the gene. In an embodiment, a non-coding region of the BCLllA gene (e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal) is targeted to alter the gene. In an embodiment, an enhancer (e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer) is targeted to alter the gene. BCLllA erythroid enhancer comprises an approximatel2.4 kb fragment of BCLllA intron2, located between approximate +52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52kb to TSS+64.4kb, see Fig. 10). It's also referred to herein as chromosome 2 location 60,716,189- 60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly). Three deoxyribonuclese I hypersensitive sites (DHSs), TSS+62kb, TSS+58kb and TSS+55kb are located in this region. Deoxyribonuclease I sensitivity is a marker for gene regulatory elements. While not wishing to be bound by theory, it's believed that deleting the ehancer region (e.g.,
TSS+52kb to TSS+64.4kb) may reduce or eliminate BCLllA expression in erythroid precursors which leads to gamma globin derepression while sparing BCLllA expression in nonerythoroid lineages. In an embodiment, the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1- hypersensitivie sites (DHS). In an embodiment, the method provides an alteration that comprises an insertion or deletion of one or more nucleotides. As described herein, in an embodiment, a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9). In an embodiment, a targeted knockout approach alters the BCLllA gene. In an embodiment, a targeted knockout approach reduces or eliminates expression of functional BCLllA gene product. In an
embodiment, targeting affects one or both alleles of the BCLllA gene. In an embodiment, an enhancer disruption approach reduces or eliminates expression of functional BCLllA gene product in the erythroid lineage.
"SCD target knockout position", as used herein, refers to a position in the BCLllA gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in reduction or elimination of expression of functional BCLllA gene product. In an embodiment, the position is in the BCLllA coding region, e.g., an early coding region. In an embodiment, the position is in the BCLllA non-coding region, e.g., an enhancer region.
In an embodiment, methods and compositions discussed herein, provide for altering (e.g., knocking out) the BCLllA gene. In an embodiment, knocking out the BCLllA gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCLllA gene, or (2) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCLllA gene,
In an embodiment, the SCD target knockout position is altered by genome editing using the CRISPR/Cas9 system. The SCD target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ- mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the SCD target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCLllA gene.
In an embodiment, the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
In an embodiment, a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule. In an embodiment, a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
In an embodiment, a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule. In an embodiment, the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
In an embodiment, two double strand breaks are introduced to flank the erythroid enhancer at the in the BCLllA gene (one 5' and the other one 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted deletion of certain elements, such as endogenous splice sites. The breaks, i.e., two double strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
In an embodiment, two sets of breaks (e.g., one double strand break and a pair of single strand breaks) are introduced to flank the erythroid enhancer in the BCLllA gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an
embodiment, the breaks (i.e., the double strand break and the pair of single strand breaks) are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites. The breaks, e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein. In an embodiment, two sets of breaks (e.g., two pairs of single strand breaks) are introduced to flank the erythroid enhancer at the SCD target position in the BCLllA gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites. The breaks, e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
In an embodiment, the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent SCD by knocking down one or both alleles of the BCLllA gene. In one embodiment, the coding region of the BCLllA gene, is targeted to alter the gene. In another embodiment, a non-coding region (e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal) of the BCLllA gene is targeted to alter the gene. In an embodiment, the promoter region of the BCLllA gene is targeted to knock down the expression of the BCLllA gene. A targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCLllA gene. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
"SCD target knockdown position", as used herein, refers to a position, e.g., in the
BCLllA gene, which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCLllA gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCLllA promoter sequence. In an embodiment, a position in the promoter sequence of the BCLllA gene is targeted by an enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described herein.
In an embodiment, one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a SCD target knockdown position to reduce, decrease or repress expression of the BCLllA gene. "SCD target position", as used herein, refers to any of an SCD target point position, SCD target knockout position, or SCD target knockdown position, as described herein.
In one aspect, disclosed herein is a gRNA molecule, e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the HBB gene or BCL11A gene.
When two or more gRNAs are used to position two or more cleavage events, e.g., double strand or single strand breaks, in a target nucleic acid, it is contemplated that the two or more cleavage events may be made by the same or different Cas9 proteins. For example, when two gRNAs are used to position two double strand breaks, a single Cas9 nuclease may be used to create both double strand breaks. When two or more gRNAs are used to position two or more single stranded breaks (single strand breaks), a single Cas9 nickase may be used to create the two or more single strand breaks. When two or more gRNAs are used to position at least one double strand break and at least one single strand break, two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
In an embodiment, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule. In an embodiment, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
In an embodiment, the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D. In an embodiment, the targeting domain is selected from those in Tables 1A-1D. For example, in an embodiment, the targeting domain is:
AAGGUGAACGUGGAUGAAGU (SEQ ID NO: 387);
GUAACGGCAGACUUCUCCUC (SEQ ID NO: 388);
GUGAACGUGGAUGAAGU (SEQ ID NO: 389); or
ACGGCAGACUUCUCCUC (SEQ ID NO: 390). In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 1A-1D.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13D. In an embodiment, the targeting domain is selected from those in Tables 13A-13D. For example, in an embodiment, the targeting domain is:
GGUGCACCUGACUCCUG (SEQ ID NO: 6803); or
GUAACGGCAGACUUCUCCAC (SEQ ID NO: 6804). In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 13A-13D.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C. In an embodiment, the targeting domain is selected from those in Tables 14A-14C. In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 14A-14C.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 24A-24D. In an embodiment, the targeting domain is selected from those in Tables 24A-24D.
In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 24A-24D.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 25A-25B. In an embodiment, the targeting domain is selected from those in Tables 25A-25B.
In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 25A-25B.
In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 26. In an embodiment, the targeting domain is selected from those in Table 26.
In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from Table 26. In another embodiment, a position in the coding region, e.g., the early coding region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2F. In an embodiment, the targeting domain is selected from those in Tables 2A-2F. In another embodiment, the targeting domain is:
UGGCAUCCAGGUCACGCCAG (SEQ ID NO: 486);
GAUGCUUUUUUCAUCUCGAU (SEQ ID NO: 487);
GCAUCCAAUCCCGUGGAGGU (SEQ ID NO: 488);
UUUUCAUCUCGAUUGGUGAA (SEQ ID NO: 489);
CCAGAUGAACUUCCCAUUGG (SEQ ID NO: 490);
AGGAGGUCAUGAUCCCCUUC (SEQ ID NO: 491);
CAUCCAGGUCACGCCAG (SEQ ID NO: 492);
GCUUUUUUCAUCUCGAU (SEQ ID NO: 493);
UCCAAUCCCGUGGAGGU (SEQ ID NO: 494);
UCAUCUCGAUUGGUGAA (SEQ ID NO: 495);
GAUGAACUUCCCAUUGG (SEQ ID NO: 496); or
AGGUCAUGAUCCCCUUC (SEQ ID NO: 497).
In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 2A-2F.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 4A-4E. In an embodiment, the targeting domain is selected from those in Table 4A-4E. In another embodiment, the targeting domain is:
GAGCUCCAUGUGCAGAACGA (SEQ ID NO: 3073);
GAGCUCCCAACGGGCCG (SEQ ID NO: 3074);
GAGUGCAGAAUAUGCCCCGC (SEQ ID NO: 3075);
GAUAAACAAUCGUCAUCCUC (SEQ ID NO: 3076);
GAUGCCAACCUCCACGGGAU (SEQ ID NO: 3077);
GCAGAAUAUGCCCCGCA (SEQ ID NO: 3078);
GCAUCCAAUCCCGUGGAGGU (SEQ ID NO: 3079);
GCCAACCUCCACGGGAU (SEQ ID NO: 3080);
GCUCCCAACGGGCCGUGGUC (SEQ ID NO: 3081); or
GGAGCUCUAAUCCCCACGCC (SEQ ID NO: 3082). In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 4A-4E.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 5A-5E. In an embodiment, the targeting domain is selected from those in Table 5A-5E.
In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 5A-5E.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 6A-6B. In an embodiment, the targeting domain is selected from those in Table 6A-6B.
In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 6A-6B.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 15A-15D. In an embodiment, the targeting domain is selected from those in Table 15A-15D. In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 15A-15D.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 16A-16E. In an embodiment, the targeting domain is selected from those in Table 16A-16E.
In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 16A-16E.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 17A-17B. In an embodiment, the targeting domain is selected from those in Table 17A-17B.
In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 17A-17B.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D. In an embodiment, the targeting domain is selected from those in Tables 7A-7D. In another embodiment, the targeting domain is: GAAAAUACUUACUGUACUGC (SEQ ID NO: 4835);
GAAAGCAGUGUAAGGCU (SEQ ID NO: 4836);
GGCUGUUUUGGAAUGUAGAG (SEQ ID NO: 4837); or
GUGCUACUUAUACAAUUCAC (SEQ ID NO: 4838).
In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 7A-7D.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8D. In an embodiment, the targeting domain is selected from those in Tables 8A-8D.
In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 8A-8D.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 9. In an embodiment, the targeting domain is selected from those in Table 9.
In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 9.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21E. In an embodiment, the targeting domain is selected from those in Tables 21A-21E. In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 21A-21E.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E. In an embodiment, the targeting domain is selected from those in Tables 22A-22E. In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 22A-22E.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23C. In an embodiment, the targeting domain is selected from those in Tables 23A-23C.
In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCLllA gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 23A-23C.
In an embodiment, the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCLllA gene. In an embodiment, the targeting domain is configured to target the promoter region of the BCL11A gene to block transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase.
One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2,
3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3C. In an embodiment, the targeting domain is selected from those in Tables 3A-3C.
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 3A-3C.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2,
3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10D. In an embodiment, the targeting domain is selected from those in Tables 10A-10D. In another embodiment, the targeting domain is:
GACGACGGCUCGGUUCACAU (SEQ ID NO: 4981);
GACGCCAGACGCGGCCCCCG (SEQ ID NO: 4982);
GCCUUGCUUGCGGCGAGACA (SEQ ID NO: 4983);
GGCUCCGCGGACGCCAGACG (SEQ ID NO: 4984);
GACGGCUCGGUUCACAU (SEQ ID NO: 4985);
GCCGCGUCUGGCGUCCG (SEQ ID NO: 4986); or
GCGGGCGGACGACGGCU (SEQ ID NO: 4987).
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 10A-10D.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11D. In an embodiment, the targeting domain is selected from those in Tables 11A-11D.
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 11A-11D.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 12. In an embodiment, the targeting domain is selected from those in Table 12.
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from Table 12.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18C. In an embodiment, the targeting domain is selected from those in Tables 18A-18C.
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 18A-18C.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is selected from those in Tables 19A-19E.
In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 19A-19E.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is selected from those in Tables 20A-20C. In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 20A-20C.
In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence selected from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A- 10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, the targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A- 6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A- 17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
In an embodiment, the targeting domain which is complementary with the BCL11A gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides. In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, the gRNA, e.g., a gRNA comprising a targeting domain, which is complementary with the HBB gene or BCL11A gene, is a modular gRNA. In another embodiment, the gRNA is a unimolecular or chimeric gRNA.
HBB gRNA as described herein may comprise from 5' to 3' : a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
A cleavage event, e.g., a double strand or single strand break, is generated by a Cas9 molecule. The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule). Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
In an embodiment, the eaCas9 molecule catalyzes a double strand break.
In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In this case, the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N- terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
In another aspect, disclosed herein is a nucleic acid, e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with an SCD target position, in the HBB gene or BCL11A gene as disclosed herein.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A- 21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A- ID, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A- 13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A- 22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
In an embodiment, the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA. In another embodiment, the nucleic acid encodes a chimeric gRNA. The nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length. In one embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a gRNA comprising from 5' to 3'
domain (comprising a "core domain", and optionally a "secondary domain"); a first
complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length. In an embodiment, a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the HBB gene or BCLllA gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule). Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCLllA gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further comprises (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene or BCLllA gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene or BCLllA gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene or BCLllA gene.
In an embodiment, a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCLllA gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCLllA gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
In an embodiment, the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
In an embodiment, the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, the nucleic acid encodes a second gRNA molecule. The second gRNA is selected to target the same SCD target position as the first gRNA molecule. Optionally, the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule. The third gRNA molecule and the fourth gRNA molecule are selected to target the same SCD target position as the first and/or second gRNA molecules.
In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A- 15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A- 24D, 25A-25B, 26, or 31. In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A- 25B, 26, or 31. In an embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In a further embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
In an embodiment, the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA. In another embodiment, the nucleic acid encoding a second gRNA is a chimeric gRNA. In another embodiment, when a nucleic acid encodes a third or fourth gRNA, the third and/or fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any
combination of modular or chimeric gRNAs may be used.
A nucleic acid may encode a second, a third, and/or a fourth gRNA comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising from 5' to 3' : a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second
complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length. In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, when the HBB gene is corrected, e.g., by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene; and further may comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used).
In an embodiment, a mutation in the HBB gene is corrected, e.g., by HDR, using an exogenously provided template nucleic acid.
In an embodiment, the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In an embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
The template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 27. In an embodiment, the template nucleic acid comprises a 5' homology arm, e.g., a 5' homology arm from Table 27. In another embodiment, the template nucleic acid comprises a 3' homology arm, e.g., a 3' homology arm from Table 27.
In another embodiment, a mutation in the HBB gene is corrected, e.g., by HDR, without using an exogenously provided template nucleic acid. While not wishing to be bound by theory, it is believed that an endogenous region of homology can mediate HDR-based correction. In an embodiment, alteration of the target sequence occurs by HDR with an endogenous genomic donor sequence. In an embodiment, the endogenous genomic donor sequence is located on the same chromosome as the target sequence. In another embodiment, the endogenous genomic donor sequence is located on a different chromosome from the target sequence. In an embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with an endogenous genomic donor sequence include, e.g., a point mutation at E6, e.g., E6V.
As described above, a nucleic acid may comprise (a) a sequence encoding a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, and (b) a sequence encoding a Cas9 molecule.
In an embodiment, (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector. Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
In another embodiment, (a) is present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) is present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecules may be AAV vectors. In another embodiment, the nucleic acid may further comprise (c) a sequence that encodes a second, third and/or fourth gRNA molecule as described herein. In an embodiment, the nucleic acid comprises (a), (b) and (c). Each of (a) and (c) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno- associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
In another embodiment, (a) and (c) are on different vectors. For example, (a) may be present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (c) may be present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. In an embodiment, the first and second nucleic acid molecules are AAV vectors.
In another embodiment, each of (a), (b), and (c) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, one of (a), (b), and (c) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In an embodiment, (a) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, a first AAV vector; and (b) and (c) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (b) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (a) and (c) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (c) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, each of (a), (b) and (c) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector. For example, (a) may be on a first nucleic acid molecule, (b) on a second nucleic acid molecule, and (c) on a third nucleic acid molecule. The first, second and third nucleic acid molecule may be AAV vectors.
In another embodiment, when a third and/or fourth gRNA molecule are present, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and
(c) (iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), and
(d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
The nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein. The nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein. The promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
The nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
In another aspect, disclosed herein is a composition comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, as described herein. The composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein. A composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein. A composition of (a), (b) and (c) may further comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used). In an embodiment, the composition is a pharmaceutical composition. The Compositions described herein, e.g., pharmaceutical compositions described herein, can be used in treating SCD in a subject, e.g., in accordance with a method disclosed herein.
In another aspect, disclosed herein is a method of altering a cell, e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets HBB gene or BCL11A gene, e.g., a gRNA; and optionally, (d) a template nucleic acid, as described herein.
In an embodiment, the method comprises contacting said cell with (a) and (b).
In an embodiment, the method comprises contacting said cell with (a), (b), and (c).
In an embodiment, the method comprises contacting said cell with (a), (b), (c) and (d).
In an embodiment, the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the cell.
The gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1D, 2A-2F,
3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
In an embodiment, the method comprises contacting a cell from a subject suffering from or likely to develop SCD. The cell may be from a subject having a mutation at an SCD target position in the HBB gene or a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
In an embodiment, the cell being contacted in the disclosed method is an erythroid cell. The contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In another embodiment, the contacting step may be performed in vivo.
In an embodiment, the method of altering a cell as described herein comprises acquiring knowledge of the sequence at an SCD target position in said cell, prior to the contacting step. Acquiring knowledge of the sequence at an SCD target position in the cell may be by sequencing the HBB gene or BCL11A gene, or a portion of the HBB gene or BCL11A gene.
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
In an embodiment, contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes (a) and optionally a second, third and/or fourth gRNA of (c).
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
In an embodiment, contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
In another aspect, disclosed herein is a method of treating or preventing a subject suffering from or likely to develop SCD, e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
(a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA disclosed herein;
(b) a Cas9 molecule, e.g., a Cas9 molecule disclosed herein; and optionally, (c)(i) a second gRNA that targets the HBB gene or BCL11A gene, e.g., a second gRNA disclosed herein, and
further optionally, (c)(ii) a third gRNA, and still further optionally, (c)(iii) a fourth gRNA that target the HBB gene or BCL11A gene, e.g., a third and fourth gRNA disclosed herein.
The method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid disclosed herein.
In an embodiment, a template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject. In an embodiment, the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the subject (or a cell from the subject).
In an embodiment, contacting comprises contacting with (a) and (b).
In an embodiment, contacting comprises contacting with (a), (b), and (c)(i).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i) and (d).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (d).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and
(d).
The gRNA of (a) or (c) (e.g., (c)(i), (c)(ii), or (c)(iii) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A- 3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
In an embodiment, the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject. In an embodiment, the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject by sequencing the HBB gene or BCL11A gene or a portion of the HBB gene or BCL11A gene.
In an embodiment, the method comprises correcting a mutation at an SCD target position in the HBB gene.
In an embodiment, the method comprises correcting a mutation at an SCD target position in the HBB gene by HDR.
In an embodiment, the method comprises introducing a mutation at an SCD target position in the BCL11A gene.
In an embodiment, the method comprises introducing a mutation at an SCD target position in the BCL11A gene by NHEJ.
When the method comprises correcting the mutation at an SCD target position by HDR, a Cas9 of (b), at least one guide RNA, e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
In an embodiment, a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by intravenous delivery of
(a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by intramuscular delivery of
(a) , (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a),
(b) , (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, contacting comprises delivering to said subject said Cas9 molecule of
(b) , as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second, third and/or fourth gRNA of (c), as an RNA.
In an embodiment, contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
When the method comprises (1) introducing a mutation at an SCD target position by
NHEJ or (2) knocking down expression of the BCL11A gene by targeting the promoter region, a Cas9 of (b) and at least one guide RNA, e.g., a guide RNA of (a) are included in the contacting step.
In an embodiment, a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
In an embodiment, a populations of cells from a subject is contacted ex vivo with (a), (b) and optionally (c) to correct the E6V mutation in the HBB gene and a second population of cells from the subject is contacted ex vivo with (a), (b) and optionally (c) to introduce a mutation in the BCL11A gene to knockout the BCL11A gene. A mixture of the two cell populations may be returned to the subject's body to treat or prevent SCD.
In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) and optionally
(c) (i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intravenous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second, third and/or fourth gRNA of (c), as an RNA.
In an embodiment, contacting comprises delivering to the subject the gRNA of (a), as an
RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
In another aspect, disclosed herein is a reaction mixture comprising a gRNA, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop SCD, or a subject having a mutation at an SCD target position in the HBB gene, or a cell from a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
In another aspect, disclosed herein is a kit comprising, (a) gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
(b) a Cas9 molecule, e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
(c)(i) a second gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
(c)(ii) a third gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
(c) (iii) a fourth gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
(d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid described herein.
In an embodiment, the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d). In an aspect, the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject. In an embodiment, the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule. In an embodiment, the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule. In an embodiment, the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage. For example, the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA. While not wishing to be bound by theory, it is believed that altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
The compositions, reaction mixtures and kits, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
Headings, including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting. Other features and advantages of the invention will be apparent from the detailed description, drawings, and from the claims.
BRIEF DESCRIPTION OF THE DRAWINGS
Figs. 1A-1I are representations of several exemplary gRNAs.
Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S.
thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules. Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737). The N-terminal RuvC-like domain is boxed and indicated with a "Y". The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated by a "G". Sm: S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4). Motif: this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance). The last line of Fig. 3B identifies 4 highly conserved residues.
Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance). The last line of Fig. 4B identifies 3 highly conserved residues.
Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance). The last line of Fig. 6B identifies 3 highly conserved residues.
Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (N. meningitidis). The N-terminal RuvC-like domain is boxed and indicated with a "Y". The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated with a "G". Sp: S. pyogenes; Nm: N. meningitidis. Motif: this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an "R" is an SV40 NLS; sequence indicated as "G" is an HA tag; and sequence indicated by an "O" is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF). Figs. 9A and 9B are schematic representations of the domain organization of S. pyogenes Cas 9. Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes). Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
Fig. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCLllA intron 2. Three erythroid DHSs are labled as distance in kilobases from BCLllA TSS (+62, +58 and +55). BCLllA transcription is from right to left.
Fig. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCLllA locus.
Figs. 12A-12B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCL11A-2983W and BCL11A-2981W.
Fig. 12A depicts schematic of DNA sequence recognized by BCL11 A-2983W and BCL11A-2981W, which flanks the putative erythroid enhancer elements.
Fig. 12B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
Figs. 13A-13B depicts detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
Fig. 13A depicts Schematic of DNA sequence recognized by BCL11 A-2995W and
BCL11 A-2984W, which flanks the putative erythroid enhancer elements.
Fig. 13B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
Fig. 14 depicts a scheme of the pair 8/15 of gRNAs surrounding the sickle mutation in combination with a Cas9 nickase (DIOA or N863A). The nickases are shown as the grey ovals.
Fig. 15 depicts the percentages of total editing event after a wildtype Cas9 or a Cas9 nickase (DIOA or N863A). A preprentation of at least three independent experiments for each condition is shown.
Fig. 16A depicts the frequency of deletions a wildtype Cas9 or a Cas9 nickase (DIOA or
N863A). A representation of at least 3 independent experiments for each condition is shown. Fig. 16B depicts the frequency distribution of the length of deletions using a wildtype Cas9 and gRNA 8 (similar results have been obtained with gRNA 15).
Fig. 16C depicts the frequency distribution of the length of deletions using a Cas9 nickase (DIOA) with gRNAs 8/15 (similar results have been obtained using Cas9 N863A).
Fig. 17A depicts the frequency of gene conversion a wildtype Cas9 or a Cas9 nickase
(DIOA or N863A).
Fig. 17B shows a scheme representing the region of similarity between the HBB and HBD loci.
Fig. 18 depicts the frequency of different lengths of HBD sequences that were incorporated into the HBB locus.
Fig. 19A depicts the frequency of insertions using a wildtype Cas9 or a Cas9 nickase (DIOA or N863A). A representation of at least three independent experiments for each condition is shown.
Fig. 19B depicts examples of common reads observed in U20S cells electroporated with plasmid encoding Cas9 N863 and gRNA 8/15 pair. The HBB reference is shown on the top.
Fig. 20A is a schematic representation of the donor template.
Fig. 20B depicts the frequency of HDR using a wildtype Cas9 or a Cas9 nickase (DIOA or N863A).
Fig. 20C depicts different forms of nonors and there contribution to HDR.
Fig. 21 depicts genome editing of the HBB locus in bone marrow leukemia K562 hematopoietic cells after electroporation of Cas9 protein complexed to HBB gRNAs 8 and 15 (RNP) or Cas9 mRNA co-delivered with HBB gRNAs 8 and 15 (RNA).
DETAILED DESCRIPTION
Definitions
"Alt-HDR" or "alternative HDR", or alternative homology-directed repair, as used herein, refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid). Alt-HDR is distinct from canonical HDR in that the process utilizes different pathways from canonical HDR, and can be inhibited by the canonical HDR mediators, RAD51 and BRCA2. Also, alt-HDR uses a single- stranded or nicked homologous nucleic acid for repair of the break.
"Canonical HDR", or canonical homology-directed repair, as used herein, refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid). Canonical HDR typically acts when there has been significant resection at the double strand break, forming at least one single stranded portion of DNA. In a normal cell, HDR typically involves a series of steps such as recognition of the break, stabilization of the break, resection, stabilization of single stranded DNA, formation of a DNA crossover intermediate, resolution of the crossover intermediate, and ligation. The process requires RAD51 and BRCA2, and the homologous nucleic acid is typically double-stranded.
Unless indicated otherwise, the term "HDR" as used herein encompasses canonical HDR and alt-HDR.
"Domain", as used herein, is used to describe segments of a protein or nucleic acid.
Unless otherwise indicated, a domain is not required to have any specific functional property.
Calculations of homology or sequence identity between two sequences (the terms are used interchangeably herein) are performed as follows. The sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes). The optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5. The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position. The percent identity between the two sequences is a function of the number of identical positions shared by the sequences.
"Governing gRNA molecule", as used herein, refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence. In an embodiment, a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the HBB or BCL11A gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b). In an embodiment, a nucleic acid molecule that encodes a CRISPR/Cas component, e.g., that encodes a Cas9 molecule or a target gene gRNA, comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component. In an embodiment, the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the HBB or BCL11A gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a
CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule. In an embodiment, the governing gRNA, e.g., a Cas9-targeting governing gRNA molecule, or a target gene gRNA- targeting governing gRNA molecule, limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting. In an embodiment, a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a governing gRNA reduces off-target or other unwanted activity. In an embodiment, a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
"Modulator", as used herein, refers to an entity, e.g., a drug, that can alter the activity
(e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence. In an embodiment, modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non- covalent bond, e.g., the attachment of a moiety, to the subject molecule. In an embodiment, a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule. A modulator can increase, decrease, initiate, or eliminate a subject activity.
"Large molecule", as used herein, refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
A "polypeptide", as used herein, refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
"Non-homologous end joining" or "NHEJ", as used herein, refers to ligation mediated repair and/or non-template mediated repair including canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
A "reference molecule", e.g., a reference Cas9 molecule or reference gRNA, as used herein, refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared. For example, a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule. Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S.
pyogenes, S. aureus or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared. In an embodiment, the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
"Replacement", or "replaced", as used herein with reference to a modification of a molecule does not require a process limitation but merely indicates that the replacement entity is present.
"Small molecule", as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD. "Subject", as used herein, may mean either a human or non-human animal. The term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats). In an embodiment, the subject is a human. In another embodiment, the subject is poultry.
"Treat", "treating" and "treatment", as used herein, mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
"Prevent", "preventing" and "prevention", as used herein, means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
"X" as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
Methods of repairing mutation(s) in the HBB gene
One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR. In this approach, mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells. The method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
In an embodiment, one HBB allele is repaired in the subject. In another embodiment, both HBB alleles are repaired in the subject. In either situation, the subject can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
In one aspect, methods and compositions discussed herein, provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene. In an embodiment, the method provides for the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V.
In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration in the HBB gene, e.g., an alternation associated with HDR. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
In an embodiment, a second, third and/or fourth gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5' or 3' to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration associated with HDR in the HBB gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300,
350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second, third and/or fourth gRNA molecule, as discussed below. For example, The targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in an alteration of the target position in the HBB gene, e.g., E6V. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second, third and/or fourth gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V.
In an embodiment, a mutation in the HBB gene, e.g., E6V is corrected using an exogenously provided template nucleic acid, e.g., by HDR. In another embodiment, a mutation in the HBB gene, e.g., E6V is corrected without using an exogenously provided template nucleic acid, e.g., by HDR. In an embodiment, alteration of the target sequence occurs with an endogenous genomic donor sequence, e.g., by HDR. In an embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. In an embodiment, a mutation in the HBB gene, e.g., E6V is corrected by an endogenous genomic donor sequence (e.g, an HBD gene). In an embodiment, an eaCas9 molecule, e.g., an eaCas9 molecule described herein, is used. In an embodiment, the eaCas9 molecule comprises HNH- like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an HNH-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at D10 (e.g., D10A). In an embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at H840 (e.g., H840A) or N863 (e.g., N863A). Methods of Altering BCL11A
One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression. One such gene is BCL11A. It plays a role in the regulation of γ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of γ globin expression. The BCL11A gene product is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in γ globin expression. In addition, it appears that the splicing of the BCL11A mRNA is developmentally regulated. In embryonic cells, it appears that the shorter BCL11A mRNA variants, known as BCL11A-S and BCL11A-XS are primary expressed, while in adult cells, the longer BCL11A-L and BCL11A-XL mRNA variants are predominantly expressed. See, Sankaran et al (2008) Science 322 p. 1839. The BCL11A protein appears to interact with the β globin locus to alter its conformation and thus its expression at different developmental stages. Thus, if BCL11A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of γ globin and HbF production.
Disclosed herein are methods for altering the SCD target position in the BCL11A gene. Altering the SCD target position is achieved, e.g., by:
(1) knocking out the BCL11A gene:
(a) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCL11A gene, or
(b) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCL11A gene, or
(2) knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
All approaches give rise to alteration of the BCL11A gene.
In one embodiment, methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCL11A gene. In another embodiment, methods described herein introduce two or more breaks to flank the erythroid enhancer of SCD target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer. In another embodiment, methods described herein comprises knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9- fusion protein by targeting the promoter region of SCD target knockdown position. All methods described herein result in alteration of the BCL11A gene. NHEJ-mediated introduction of an indel in close proximity to or within the early coding region of the SCD knockout position
In an embodiment, the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the SCD target knockout position (e.g., the early coding region) of the BCL11A gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the SCD target knockout position, such that the break-induced indel could be reasonably expected to span the SCD target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the SCD target knockout position.
In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a SCD target knockout position. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of a SCD target knockout position in the BCL11A gene.
In an embodiment, a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a SCD target knockout position in the BCL11A gene. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on one side, e.g., upstream or downstream, of a nucleotide of a SCD target knockout position in the BCLllA gene.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, The targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCLllA gene. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCLllA gene. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a SCD target knockout position in the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene.
NHEJ-mediated deletion of the erythroid enhancer at the SCD target position
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two double strand breaks— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first double strand break is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to
TSS+52.0kb), and the second double strand break is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10). In an embodiment, the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first double strand break may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb),
and the second double strand break to be paired with the first double strand break may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the first double strand break may be positioned in the BCLllA gene:
(1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb,
(4) between TSS+30kb to TSS+40kb,
(5) between TSS+40kb to TSS+45kb,
(6) between TSS+45kb to TSS+47.5kb,
(7) between TSS+47.5kb to TSS+50kb,
(8) between TSS+50kb to TSS+51kb,
(9) between TSS+5 lkb to TSS+51. lkb,
(10) between TSS+51. lkb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb,
(15) between TSS+51.6kb to TSS+51.7kb, (16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
(1) between TSS+52kb to TSS+53kb,
(2) between TSS+53kb to TSS+54kb,
(3) between TSS+54kb to TSS+55kb,
(4) between TSS+55kb to TSS+56kb,
(5) between TSS+56kb to TSS+57kb,
(6) between TSS+57kb to TSS+58kb,
(7) between TSS+58kb to TSS+59kb,
(8) between TSS+59kb to TSS+60kb,
(9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
(12) between TSS+63kb to TSS+64kb,
(13) between TSS+64kb to TSS+64.4kb, (14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb.
While not wishing to be bound by theory, it is believed that the two double strand breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10). In an embodiment, the two sets of breaks (either the double strand break or the pair of single strand breaks) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between
TSS+52.0kb to TSS+64.4kb),
and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
(1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb,
(4) between TSS+30kb to TSS+40kb,
(5) between TSS+40kb to TSS+45kb,
(6) between TSS+45kb to TSS+47.5kb,
(7) between TSS+47.5kb to TSS+50kb,
(8) between TSS+50kb to TSS+51kb, 9) between TSS+51kb to TSS+51.1kb,
(10) between TSS+51.1kb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb,
(15) between TSS+51.6kb to TSS+51.7kb,
(16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks)may be positioned in the BCLllA gene:
(1) between TSS+52kb to TSS+53kb,
(2) between TSS+53kb to TSS+54kb,
(3) between TSS+54kb to TSS+55kb,
(4) between TSS+55kb to TSS+56kb,
(5) between TSS+56kb to TSS+57kb, 6) between TSS+57kb to TSS+58kb,
7) between TSS+58kb to TSS+59kb,
8) between TSS+59kb to TSS+60kb,
9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
(12) between TSS+63kb to TSS+64kb,
(13) between TSS+64kb to TSS+64.4kb,
(14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb.
While not wishing to be bound by theory, it is believed that the two sets of breaks (either the double strand break or the pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCLllA gene. In an embodiment, the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10). In an embodiment, the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first pair of single strand breaks may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between
TSS+52.0kb to TSS+64.4kb),
and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the pair of single strand breaks may be positioned in the BCLllA gene: (1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb, 4) between TSS+30kb to TSS+40kb,
5) between TSS+40kb to TSS+45kb,
6) between TSS+45kb to TSS+47.5kb,
7) between TSS+47.5kb to TSS+50kb,
8) between TSS+50kb to TSS+51kb,
9) between TSS+51kb to TSS+51.1kb,
(10) between TSS+51.1kb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb,
(15) between TSS+51.6kb to TSS+51.7kb,
(16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
(1) between TSS+52kb to TSS+53kb, 2) between TSS+53kb to TSS+54kb,
3) between TSS+54kb to TSS+55kb,
4) between TSS+55kb to TSS+56kb,
5) between TSS+56kb to TSS+57kb,
6) between TSS+57kb to TSS+58kb,
7) between TSS+58kb to TSS+59kb,
8) between TSS+59kb to TSS+60kb,
9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
(12) between TSS+63kb to TSS+64kb,
(13) between TSS+64kb to TSS+64.4kb,
(14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb. While not wishing to be bound by theory, it is believed that the two sets of breaks (e.g., the two pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCLllA gene.
Knocking down the BCLllA gene mediated by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
A targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product. As described herein, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene. In an embodiment, one or more eiCas9s may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9s fused to one or more chromatin modifying proteins may be used to alter chromatin status.
Methods and compositions discussed herein may be used to alter the expression of the BCLllA gene to treat or prevent SCD by targeting a promoter region of the BCLllA gene. In an embodiment, the promoter region, e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCLllA gene. In an embodiment, the methods and compositions discussed herein may be used to knock down the BCLllA gene to treat or prevent SCD by targeting 0.5 kb upstream or downstream of the TSS. A targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product. As described herein, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
Methods to Treat or Prevent Sickle Cell Disease (SCD)
Disclosed herein are the approaches to treat or prevent SCD, using the compositions and methods described herein. One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR. In this approach, mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells. The method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
In an embodiment, one HBB allele is repaired in the subject. In another embodiment, both HBB alleles are repaired in the subject. In either situation, the subjects can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
In one approach, the BCL11A gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
While not wishing to be bound by theory, it is considered that increasing levels of fetal hemoglobin (HbF) in subjects with SCD may ameliorate disease. Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues. Subjects with beta- thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
In an embodiment, knockout or knockdown of the BCL11A gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression. BCL11A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin. Knockout of the BCL11A gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta- thalassemia (HbF will form tetramers with hemoglobin alpha).
In an embodiment, the BCL11A knockout or knockdown is targeted specifically to cells of the erythroid lineage. BCL11A knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function. In an embodiment, erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells. For example, in the case of in vivo delivery, erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
In an embodiment, the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with
SCD. For example, subjects with beta thalassemia major will suffer from less severe anemia and will need fewer blood transfusions. They will therefore have fewer complications arising from transfusions and chelation therapy. In an embodiment, the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells. For example, subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy. In an embodiment, the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
Knockdown or knockout of one or both BCL11A alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
In an embodiment, the method comprises initiating treatment of a subject prior to disease onset.
In an embodiment, the method comprises initiating treatment of a subject after disease onset.
In an embodiment, the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of SCD. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
In an embodiment, the method comprises initiating treatment of a subject in an advanced stage of disease.
Overall, initiation of treatment for subjects at all stages of disease is expected to prevent negative consequences of disease and be of benefit to subjects.
In an embodiment, the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
In an embodiment, the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
In an embodiment, the method comprises initiating treatment of a subject who is transfusion-dependent.
In an embodiment, the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
In an embodiment, the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
In an embodiment, a cell is treated, e.g., ex vivo. In an embodiment, an ex vivo treated cell is returned to a subject.
In an embodiment, allogenic or autologous bone marrow or erythroid cells are treated ex vivo. In an embodiment, an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject. In an embodiment, an erythroid cell, e.g., an autologous erythroid cell, is treated ex vivo and returned to the subject. In an embodiment, an autologous stem cell, is treated ex vivo and returned to the subject. In an embodiment, the modified HSCs are administered to the patient following no myeloablative pre-conditioning. In an embodiment, the modified HSCs are administered to the patient following mild myeloablative preconditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs. In other aspects, the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
In an embodiment, the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
I. gRNA Molecules
A gRNA molecule, as that term is used herein, refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid. gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules). A gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
Several exemplary gRNA structures, with domains indicated thereon, are provided in Figs. 1A-1G. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
3':
a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from any of Tables 1A-1D, 2A- 2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A- 20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31; a first complementarity domain;
a linking domain;
a second complementarity domain (which is complementary to the first
complementarity domain);
a proximal domain; and
optionally, a tail domain. In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from Tables 1A-1D, 2A-2F, 3A-3C, 4A- 4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31; and
a first complementarity domain; and
a second strand, comprising, preferably from 5' to 3':
optionally, a 5' extension domain;
a second complementarity domain;
a proximal domain; and
optionally, a tail domain.
The domains are discussed briefly below.
The Targeting Domain
Figs. 1A-1G provide examples of the placement of targeting domains.
The targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid. The targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid. It is understood that in a targeting domain and target sequence pair, the uracil bases in the targeting domain will pair with the adenine bases in the target sequence. In an embodiment, the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain. In an embodiment, the core domain is fully complementary with the target sequence. In an embodiment, the targeting domain is 5 to 50 nucleotides in length. The strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
Targeting domains are discussed in more detail below. The First Complementarity Domain
Figs. 1A-1G provide examples of first complementarity domains. The first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, the first complementarity domain is 5 to 30 nucleotides in length. In an
embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an
embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
In an embodiment, the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length. In an embodiment, the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length. In an embodiment, the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
The first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
First complementarity domains are discussed in more detail below.
The Linking Domain
Figs. 1A-1G provide examples of linking domains.
A linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA. The linking domain can link the first and second complementarity domains covalently or non-covalently. In an embodiment, the linkage is covalent. In an embodiment, the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE. In an embodiment, the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain. Typically the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
In modular gRNA molecules the two molecules are associated by virtue of the
hybridization of the complementarity domains see e.g., Fig. 1A.
A wide variety of linking domains are suitable for use in unimolecular gRNA molecules. Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length. In an embodiment, a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length. In an embodiment, a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length. In an embodiment, a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain. In an embodiment, the linking domain has at least 50% homology with a linking domain disclosed herein.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
Linking domains are discussed in more detail below.
The 5' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A. In an embodiment, the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
The Second Complementarity Domain
Figs. 1A-1G provides examples of second complementarity domains.
The second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an
embodiment, e.g., as shown in Figs. 1A-1B, the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
In an embodiment, the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length. In an embodiment, the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length. In an embodiment, the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
In an embodiment, the 5' subdomain and the 3' subdomain of the first complementarity domain, are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
The second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S.
aureus or S. thermophilus, first complementarity domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
A Proximal domain
Figs. 1A-1G provide examples of proximal domains.
In an embodiment, the proximal domain is 5 to 20 nucleotides in length. In an embodiment, the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
Some or all of the nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
A Tail Domain
Figs. 1A-1G provide examples of tail domains.
As can be seen by inspection of the tail domains in Figs. 1A-1E, a broad spectrum of tail domains are suitable for use in gRNA molecules. In an embodiment, the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In embodiment, the tail domain nucleotides are from or share homology with sequence from the 5' end of a naturally occurring tail domain, see e.g., panels 4a or 5a of Fig. ID or Fig. IE. In an embodiment, the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
In an embodiment, the tail domain is absent or is 1 to 50 nucleotides in length. In an embodiment, the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
In an embodiment, the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription. When a T7 promoter is used for in vitro transcription of the gRNA, these nucleotides may be any nucleotides present before the 3' end of the DNA template. When a U6 promoter is used for in vivo transcription, these nucleotides may be the sequence UUUUUU. When alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
The domains of gRNA molecules are described in more detail below.
The Targeting Domain
The "targeting domain" of the gRNA is complementary to the "target domain" on the target nucleic acid. The strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid. Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
In an embodiment, the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/- 5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the targeting domain is 20+/-5 nucleotides in length.
In an embodiment, the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10,
70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length. In an embodiment, the targeting domain is 30+/- 10 nucleotides in length.
In an embodiment, the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
Typically the targeting domain has full complementarity with the target sequence. In an embodiment the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides"), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
In an embodiment, there are no noncomplementary nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the targeting domain can be modified with a phosphorothioate, or other
modification from Section VIII. In an embodiment, a nucleotide of the targeting domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in a system in Section IV. The candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated. In an embodiment, all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain. In another embodiment,
1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
In an embodiment, the targeting domain comprises, preferably in the 5'→3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
The Core Domain and Secondary Domain of the Targeting Domain
The "core domain" of the targeting domain is complementary to the "core domain target" on the target nucleic acid. In an embodiment, the core domain comprises about 8 to about 13 nucleotides from the 3' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
In an embodiment, the core domain and targeting domain, are independently, 6 +1-2, 1+1-
2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2, or 16+-2, nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-2 nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-4 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
The core domain is complementary with the core domain target. Typically the core domain has exact complementarity with the core domain target. In an embodiment, the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
The "secondary domain" of the targeting domain of the gRNA is complementary to the "secondary domain target" of the target nucleic acid.
In an embodiment, the secondary domain is positioned 5' to the core domain.
In an embodiment, the secondary domain is absent or optional.
In an embodiment, if the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 11 to 16 nucleotides in length.
In an embodiment, if the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 10 to 15 nucleotides in length.
In an embodiment, if the targeting domain is 22 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 9 to 14 nucleotides in length.
In an embodiment, if the targeting domain is 21 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 8 to 13 nucleotides in length.
In an embodiment, if the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 7 to 12 nucleotides in length.
In an embodiment, if the targeting domain is 19 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 6 to 11 nucleotides in length. In an embodiment, if the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 5 to 10 nucleotides in length.
In an embodiment, if the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 4 to 9 nucleotides in length.
In an embodiment, if the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 3 to 8 nucleotides in length.
In an embodiment, the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or
15 nucleotides in length.
The secondary domain is complementary with the secondary domain target. Typically the secondary domain has exact complementarity with the secondary domain target. In an embodiment the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not
complementary with the corresponding nucleotide of the secondary domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the core domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. Typically, a core domain will contain no more than 1, 2, or 3 modifications.
Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the secondary domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification from Section VIII. Typically, a secondary domain will contain no more than 1, 2, or 3 modifications.
Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target, may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
In an embodiment, (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g.,
modifications from Section VIII) of the nucleotides of the secondary domain, may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications. The First and Second Complementarity Domains
The first complementarity domain is complementary with the second complementarity domain.
Typically the first domain does not have exact complementarity with the second complementarity domain target. In an embodiment, the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain. In an embodiment, 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides, will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region. In an embodiment, an unpaired, or loop-out, region, e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain. In an embodiment, the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5' end of the second complementarity domain.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the first and second complementarity domains are:
independently, 6 +1-2, 1+1-2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2,
16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2, 21+/-2, 22+/-2, 23+/-2, or 24+/-2 nucleotides in length;
independently, 6, 7, 8, 9, 10, 11, 12, 13, 14, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26, nucleotides in length; or
independently, 5 to 24, 5 to 23, 5 to 22, 5 to 21, 5 to 20, 7 to 18, 9 to 16, or 10 to 14 nucleotides in length.
In an embodiment, the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
In an embodiment, the first and second complementary domains, independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
In an embodiment, the first and second complementary domains, independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second
complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the first and second complementary domains, independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no nucleotide that is modified within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G. In an embodiment, the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
The duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
In an embodiment, the first and second complementarity domains, when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 5).
In an embodiment, the first and second complementarity domains, when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGAAAAGCAUAGCAAGUUA AAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 27).
In an embodiment the first and second complementarity domains, when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGGAAACAGCAUAGCAAGU UAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC
(SEQ ID NO: 28).
In an embodiment the first and second complementarity domains, when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGUUUUGGAAACAAAACAG CAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA GUCGGUGC (SEQ ID NO: 29). In an embodiment, nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAGAAAUAGCAAGUUAAUAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 30); NNNNNNNNNNNNNNNNNNNNGUUUAAGAGCUAGAAAUAGCAAGUUUAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 31); or NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAUGCUGUAUUGGAAACAAUACAG CAUAGCAAGUUAAUAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA GUCGGUGC (SEQ ID NO: 32).
The 5' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain. In an embodiment, the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
In an embodiment, the 5' extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the 5' extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment, a nucleotide of the 5' extension domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
In an embodiment, the 5' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
Modifications in the 5' extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate 5' extension domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate 5' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G. The Linking Domain
In a unimolecular gRNA molecule the linking domain is disposed between the first and second complementarity domains. In a modular gRNA molecule, the two molecules are associated with one another by the complementarity domains.
In an embodiment, the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the linking domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
In an embodiment, the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length. In an embodiment, the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
In and embodiment, the linking domain is a covalent bond.
In an embodiment, the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain. In an embodiment, the duplexed region can be 20+/-10 base pairs in length. In an embodiment, the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length. In an embodiment, the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
Typically the sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
In an embodiment, the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the linking domain can be modified with a phosphorothioate, or other
modification(s) from Section VIII. In an embodiment a nucleotide of the linking domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. In an embodiment, the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated a system described in Section IV. A candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G. The Proximal Domain
In an embodiment, the proximal domain is 6 +1-2, 1+1-2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
In an embodiment, the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
In an embodiment, the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the proximal domain can be modified with a phosphorothioate, or other
modification(s) from Section VIII. In an embodiment a nucleotide of the proximal domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
In an embodiment, the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain. Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A-1G.
The Tail Domain
In an embodiment, the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the tail domain is 20+/-5 nucleotides in length.
In an embodiment, the tail domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
In an embodiment, the tail domain is 25+/- 10 nucleotides in length.
In an embodiment, the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
In an embodiment, the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
In an embodiment, the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from
Section VIII. In an embodiment a nucleotide of the tail domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8
modifications. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the tail domain comprises a tail duplex domain, which can form a tail duplexed region. In an embodiment, the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length. In an embodiment, a further single stranded domain, exists 3' to the tail duplexed domain. In an embodiment, this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
In an embodiment, the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
In an embodiment, the proximal and tail domain, taken together comprise the following sequences:
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCU (SEQ ID NO: 33), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGGUGC (SEQ ID NO: 34), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCGGAUC (SEQ ID NO: 35), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUG (SEQ ID NO: 36), or
AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
AAGGCUAGUCCG (SEQ ID NO: 38).
In an embodiment, the tail domain comprises the 3' sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
In an embodiment, the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
In an embodiment, tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used. In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template if a T7 promoter is used.
In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
In an embodiment a gRNA has the following structure:
5' [targeting domain] -[first complementarity domain] -[linking domain] -[second complementarity domain] -[proximal domain] -[tail domain] -3'
wherein, the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein; the linking domain is 1 to 5 nucleotides in length;
the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
Exemplary Chimeric gRNAs
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
3':
a targeting domain (which is complementary to a target nucleic acid);
a first complementarity domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, or 26 nucleotides;
a linking domain;
a second complementarity domain (which is complementary to the first complementarity domain);
a proximal domain; and
a tail domain,
wherein,
(a) the proximal and tail domain, when taken together, comprise
at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
(b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is
complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides
(e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides
(e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at leastl5, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides. In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides
(e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides
(e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides
(e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides. In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides
(e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUUUU (SEQ ID NO: 45). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
In some embodiments, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUACUAAAAC AAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUUUU (SEQ ID NO: 40). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
The sequences and structures of exemplary chimeric gRNAs are also shown in Figs. 1H-
II. Exemplary Modular gRNAs
In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
25, or 26 nucleotides;
a first complementarity domain; and
a second strand, comprising, preferably from 5' to 3':
optionally a 5' extension domain;
a second complementarity domain;
a proximal domain; and
a tail domain,
wherein:
(a) the proximal and tail domain, when taken together, comprise
at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
(b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
In an embodiment, the proximal and tail domain, when taken together, comprise at least
15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is
complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides
(e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 5 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides
(e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides
(e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides
(e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. II. Methods for Designing gRNAs
Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
Methods for selection and validation of target sequences as well as off-target analyses are described, e.g., in Mali et al., 2013 Science 339(6121): 823-826; Hsu et al. Nat Biotechnol, 31(9): 827-32; Fu et al., 2014 Nat Biotechnol, doi: 10.1038/nbt.2808. PubMed PMID: 24463574; Heigwer et al., 2014 Nat Methods l l(2): 122-3. doi: 10.1038/nmeth.2812. PubMed PMID:
24481216; Bae et al., 2014 Bioinformatics PubMed PMID: 24463181; Xiao A et al., 2014 Bioinformatics PubMed PMID: 24389662.
For example, a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage. For each possible gRNA choice using S. pyogenes Cas9, software tools can identify all potential off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to a certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs. The cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme. Each possible gRNA can then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage. Other functions, e.g., automated reagent design for gRNA vector construction, primer design for the on-target
Surveyor assay, and primer design for high-throughput detection and quantification of off -target cleavage via next-generation sequencing, can also be included in the tool. Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein.
Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas- OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA- guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off- target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined , an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality or presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of S. aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer, 21-mer, 22- mer, 23-mer and 24-mer gRNAs were designed. Tarteting domains, disclosed herein, may comprise the 17-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A- 7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A- 11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 18-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A- 19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 19-mer described in Tables 1A-1D, 2A-2F, 3A- 3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A- 6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A- 17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A- 4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 21-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A- 21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A- 15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A- 24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 22-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A- 10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 1A- 1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A- 13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A- 22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 23-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A- 7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A- 10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Tarteting domains, disclosed herein, may comprises the 24-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A- 25B, 26, or 31, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A- 19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two considerations:
1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and
cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The targeting domains discussed herein can be incorporated into the gRNAs described herein. Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to correct a mutation in the HBB gene
gRNAs were designed for use with S. pyogenes, and S. aureus Cas9 enzymes to target the E6V mutation in the HBB gene. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In one strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes
(Tables 1A-1C). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to target the E6V mutation in the HBB gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality. Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5'G. Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the
5'G. Note that tiers are non-inclusive (each gRNA is listed only once). gRNAs for use with the S. aureus (Table ID J, Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list.
In a second strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 13A-13D) and 5 tiers for S. aureus (Tables 14A-14C). The targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) a short distance to the target position, e.g., within lOObp upstream and lOObp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5' G. For selection of tier 2 gRNAs, a short distance and high orthogonality were required but the presence of a 5'G was not required. Tier 3 uses the same distance restriction and the requirement for a 5'G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5'G. The targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) a short distance to the target position, e.g., within lOObp upstream and lOObp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5' G. For selection of tier 2 gRNAs, a short distance and high orthogonality were required but the presence of a 5'G was not required. Tier 3 uses the same distance restriction and the requirement for a 5'G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5'G.
Tier 5 is selected based on (1) a short distance to the target position, e.g., within lOObp upstream and lOObp downstream of the mutation and (2) PAM is NNGRRV. Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier. In some instances, there are no
corresponding exemplary gRNAs in certain tiers.
In a third strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes
(Tables 24A-24D), 4 tiers for S. aureus (Tables 25A-25B) and 3 tiers for N. meningitidis
(Tables 26). The targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) a high level of orthogonality. The targeting domain for tier 2 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) the presence of a 5'G. The targeting domain for tier 3 gRNA molecules to use with S. pyogenes Cas9 were selected based on distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation. The targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation, (2) a high level of orthogonality and (3) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation, (2) the presence of a 5'G, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) PAM is NNGRRV. The targeting domain for tier 1 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) a high level of orthogonality. The targeting domain for tier 2 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation and (2) the presence of a 5'G. The targeting domain for tier 3 gRNA molecules to use with N. meningitidis Cas9 were selected based on distance to the target position, e.g., within 200bp upstream and 200bp downstream of the mutation.
In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B in Table 24D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B in Table 24D (for S. pyogenes). For example, HBB-9, HBB-20can be combined with HBB-11, HBB-39. Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock out the BCL11 A gene
gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to induce an insertion or deletion of one or more nucleotides mediated by NHEJ in close proximity to or within the early coding region. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In onestrategy, the gRNAs were identified and ranked into 4 tires for S. pyogenes (Tables 2A-2D). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to knockout the BCL11A gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality. Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5'G. Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5'G. Tier 4 only required the presence in the coding sequence. Note that tiers are non-inclusive (each gRNA is listed only once). gRNAs for use with the S. aureus (Table 2E), and N. meningitidis (Table 2FJ Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a second strategy, the gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 4A-4E), and S. aureus (Tables 5A-5E); and 2 tiers for N. meningitidis (Tables 6A-6B). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). For N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain for tier 2 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a third strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 15A-15D), and N. meningitidis (Tables 17A-17B); and 5 tiers for S. aureus (Tables 16A-16D). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of
orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a the target site (e.g., start codon) mutation, e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site, e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain to be used with N.
meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In an embodiment, when a single gRNA molecule is used to target a Cas9 nickase to create a single strand break in close proximity to the BCLl 1A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, when a single gRNA molecule is used to target a Cas9 nuclease to create a double strand break to in close proximity to the BCLl 1 A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, dual targeting is used to create two double strand breaks to in closeproximity to the mutation, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene. In an embodiment, the first and second gRNAs are used to target two Cas9 nucleases to flank, e.g., the first of gRNA is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), and the second gRNA is used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1 A target position) in the BCLl 1 A gene.
In an embodiment, dual targeting is used to create a double strand break and a pair of single strand breaks to delete a genomic sequence including the BCLl 1 A target position. In an embodiment, the first, second and third gRNAs are used to target one Cas9 nuclease and two Cas9 nickases to flank, e.g., the first gRNA that will be used with the Cas9 nuclease is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1A target position) or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position), and the second and third gRNAs that will be used with the Cas9 nickase pair are used to target the opposite side of the mutation (e.g., within 200 bp upstream or downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, when four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four single strand breaks to delete genomic sequence including the mutation, the first pair and second pair of gRNAs are used to target four Cas9 nickases to flank, e.g., the first pair of gRNAs are used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), and the second pair of gRNAs are used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCLl 1 A gene.
In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA
comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 15D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 15D (for S. pyogenes). For example, BCLl 1A-5355 or BCLl 1 A- 5380 can be combined with BCLl 1A-5321 or BCLl 1A-5416; or BCLl 1A-5333, BCLl 1A-5354, or BCLl lA-5329 can be combined with BCLl lA-5367 or BCLl lA-5341. Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock down the BCLl 1 A gene
gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules, e.g., enzymatically inactive Cas9 (eiCas9) molecules or Cas9 fusion proteins (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter (e.g., to block, reduce, or decrease) the transcription of the BCLl 1 A gene. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules.
In one strategy, the targeting domains for gRNA molecules to knockdown the BCL11A gene were desgined to target the lkb of sequence 3' of the start codon. They were listed in a single list for S. pyogenes (Table 3A), S. aureus (Table 3B) and N. meningitidis (Table 3CJ.
In a second strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 10A-10D), and S. aureus (Tables 11A-11D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 12). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., a
transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) , (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site).
In a third strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 18A-18C). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with S.
pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 19A-19B). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N.
meningitidis (Tables 20A-20C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to remove (e.g., delete) the enhancer region the BCL11A gene
gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to remove (e.g., delete) the enhancer region in the BCL11A gene. As an example, two strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N.
meningitidis one or more Cas9 molecules.
In an strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables
7A-7D) and for S. aureus (Tables 8A-8D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 9). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes, S. aureus Cas9 were selected based on (1) a reasonable distance to the target position, e.g., within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of a
5'G. For selection of tier 2 gRNAs, reasonable distance and high orthogonality were required but the presence of a 5'G was not required. Tier 3 uses the same distance restriction and the requirement for a 5'G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5'G. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a second strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 21A-21E). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5'G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) presence of 5'G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 22A-22E). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality, (3) ) presence of 5'G and (4) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) presence of 5'G and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis (Tables 23A-23C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5'G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) presence of 5'G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 20E (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 20E (for S. pyogenes). For example, BCL11A-13271 or
BCLl lA-13264 can be combined with BCLl lA-13276; or BCLl lA-13262 or BCLl lA-13282 can be combined with BCLl lA-13290 or BCLl lA-13280.
In an embodiment, two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule. In another embodiment, when two or more (e.g., three or four) gRNAs are used with two or more Cas9 molecules, at least one Cas9 molecule is from a different species than the other Cas9 molecule(s). For example, when two gRNA molecules are used with two Cas9 molecules, one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
Any of the targeting domains in the tables described herein can be used with a Cas9 nickase molecule to generate a single strand break.
Any of the targeting domains in the tables described herein can be used with a Cas9 nuclease molecule to generate a double strand break.
When two gRNAs designed for use to target two Cas9 molecules, one Cas9 can be one species, the second Cas9 can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired. It is contemplated herein that any upstream gRNA described herein may be paired with any downstream gRNA described herein. When an upstream gRNA designed for use with one species of Cas9 is paired with a downstream gRNA designed for use from a different species of Cas9, both Cas9 species are used to generate a single or double-strand break, as desired.
Exemplary Targeting Domains
Table 1A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters, and are selected based on the close proximity and orientation to mutation and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a Cas9 molecule (e.g., a S. pyogenes Cas9 molecule) that gives double stranded cleavage. Any of the targeting domains in the table can be used with a Cas9 (e.g., a S. pyogenes Cas9 nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using Cas9 nickases (e.g., a S. pyogenes Cas9 nickase) with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. In an embodiment, two 20-mer guide RNAs are used to target two Cas9 nucleases (e.g., two S. pyogenes Cas9 nucleases) or two Cas9 nickases (e.g., two S. pyogenes Cas9 nickases), e.g., HBB-S and HBB-25 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g.,
HBB-35 and HBB-53 are used.
Table 1A
Figure imgf000123_0001
HBB-35 - GUGAACGUGGAUGAAG U 17 389
H BB-53 + ACGGCAGACU UCUCCU C 17 390
Table IB provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters and are selected based on the presence of a 5' G and reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position.
Table IB
Figure imgf000124_0001
Table 1C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the third tier parameters and are selected based on reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non- complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. Table 1C
Figure imgf000125_0001
HBB-49 + UGAUACCAACCUGCCCA 17 433
HBB-27 + UGCACCAUGGUGUCUGUUUG 20 434
HBB-31 - UGCCGUUACUGCCCUGU 17 435
HBB-42 - UGGGCAGGUUGGUAUCA 17 436
HBB-16 - UGG U AU CAAGG U U ACAAG AC 20 437
HBB-14 - UGGUGAGGCCCUGGGCAGGU 20 438
HBB-18 - UUAAGGAGACCAAUAGAAAC 20 439
HBB-48 + UUGAUACCAACCUGCCC 17 440
HBB-13 - UUGGUGGUGAGGCCCUGGGC 20 441
Table ID provides exemplary targeting domains for the E6V target site in the HBB gene selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. aureus single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position.
Table ID
Figure imgf000126_0001
HBB-71 - CAUGGUGCAUCUGACUC 20 457
HBB-72 - UGGUGCAUCUGACUCCU 17 458
HBB-73 - GGUGCAUCUGACUCCUG 17 459
HBB-74 - UGCAUCUGACUCCUGAG 17 460
HBB-75 - UCUGCCGUUACUGCCCU 17 461
HBB-76 - CUGCCGUUACUGCCCUG 17 462
HBB-77 - CUGCCCUGUGGGGCAAG 17 463
HBB-78 - UGUGGGGCAAGGUGAAC 17 464
HBB-79 - GGGCAAGGUGAACGUGG 17 465
HBB-80 - CGUGGAUGAAGUUGGUG 17 466
HBB-81 - AAGUUGGUGGUGAGGCC 17 467
HBB-82 - GG U U ACAAG ACAGG U U U 17 468
HBB-83 - G U U ACAAG ACAGG U U U A 17 469
HBB-84 - AGG U U U AAGG AG ACCAA 17 470
HBB-85 - AAGGAGACCAAUAGAAA 17 471
HBB-86 + GCUAGUGAACACAGUUGUGU 20 472
HBB-87 + GUGUCUGUUUGAGGUUGCUA 20 473
HBB-88 + AGAUGCACCAUGGUGUCUGU 20 474
HBB-89 + GUAACGGCAGACUUCUCCUC 20 475
HBB-90 + AGUAACGGCAGACUUCUCCU 20 476
HBB-91 + UCCACGUUCACCUUGCCCCA 20 477
HBB-92 + AACCUUGAUACCAACCUGCC 20 478
HBB-93 + AGUGAACACAGUUGUGU 17 479
HBB-94 + UCUGUUUGAGGUUGCUA 17 480
HBB-95 + UGCACCAUGGUGUCUGU 17 481
HBB-96 + ACGGCAGACUUCUCCUC 17 482
HBB-97 + AACGGCAGACUUCUCCU 17 483
HBB-98 + ACGUUCACCUUGCCCCA 17 484
HBB-99 + CUUGAUACCAACCUGCC 17 485
Table 2 A provides exemplary targeting domains for knocking out the BCL11A gene selected according to first tier parameters, and are selected based on close proximity to start of the coding sequence and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. In an embodiment, two 20-mer guide RNAs are used to target two S. pyogenes Cas9 nucleases or two S. pyogenes Cas9 nickases, e.g., BCLllA-31 and BCL1 J4-40, BCLllA-30 and BCLllA-42, or BCLllA-24 and BCLllA-53 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., BCL11A-19 and BCLUA-90, BCLllA-ΊΊ and BCLUA-92, or BCL11A-1\ and BCLUA-103 are used.
Table 2A
Figure imgf000128_0001
Table 2B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters and are selected based on close proximity to start of the coding sequence and presence of a 5' G. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases
(nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. Table 2B
Figure imgf000129_0001
Table 2C provides exemplary targeting domains for knocking out the BCLllA gene selected according to the third tier parameters and are selected based on close proximity to start of the coding sequence. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position.
Table 2C
Figure imgf000130_0001
BCLllA-134 + CACUCAUCCCAGGCGUG 17 557
BCLllA-139 + CAGAACGAGGGGAGGAG 17 558
BCLllA-69 - CAGAUGAACUUCCCAUU 17 559
BCLllA-96 + CAGCUUUUUCUAAGCAG 17 560
BCLllA-86 + CAUCCUCUGGCGUGACC 17 561
BCLllA-93 + CAUCUCGAUUGGUGAAG 17 562
BCLllA-100 + CAUCUGGCACUGCCCAC 17 563
BCLllA-66 - CAUGACCUCCUCACCUG 17 564
BCLllA-99 + CCAAUGGGAAGUUCAUC 17 565
BCLllA-46 + CCACAGCUU UUUCUAAGCAG 20 566
BCLllA-62 - CCAGACCACGGCCCGUU 17 567
BCLllA-68 - CCAGAUGAACUUCCCAU 17 568
BCLllA-8 - CCAGCACUUAAGCAAAC 17 569
BCLllA-107 + CCCAACGGGCCGUGGUC 17 570
BCLllA-7 - CCCAGCACUUAAGCAAA 17 571
BCLllA-49 + CCCCCAAUGGGAAGUUCAUC 20 572
BCLllA-55 + CCCCUUCUGGAGCUCCCAAC 20 573
BCLllA-18 - CCCGUUGGGAGCUCCAGAAG 20 574
BCLllA-9 + CCCGUUUGCU UAAGUGC 17 575
BCLllA-63 - CCGUUGGGAGCUCCAGA 17 576
BCLllA-10 + CCGUUUGCUUAAGUGCU 17 577
BCLllA-27 - CCUCUGCUUAGAAAAAGCUG 20 578
BCLllA-104 + CCUUCUGGAGCUCCCAA 17 579
BCLllA-36 + CGUCAUCCUCUGGCGUGACC 20 580
BCLllA-78 - CGUGGAGGUUGGCAUCC 17 581
BCLllA-64 - CGUUGGGAGCUCCAGAA 17 582
BCLllA-11 + CGUUUGCU UAAGUGCUG 17 583
BCLllA-84 + CUAUGUGUUCCUGUUUG 17 584
BCLllA-136 + CUCCAUGUGCAGAACGA 17 585
BCLllA-128 - CUCUAAUCCCCACGCCU 17 586
BCLllA-118 + CUGCACUCAUCCCAGGCGUG 20 587
BCLllA-74 - CUGCUUAGAAAAAGCUG 17 588
BCLllA-56 + CUGGAGCUCCCAACGGGCCG 20 589
BCLllA-87 + CUGGAUGCCAACCUCCA 17 590
BCLllA-105 + CUUCUGGAGCUCCCAAC 17 591
BCLllA-124 - UAAACUUCUGCACUGGA 17 592
BCLllA-98 + UAAGAAUGUCCCCCAAU 17 593
BCLllA-34 - UAGAGGAAUUUGCCCCAAAC 20 594
BCLllA-131 + UAUUCUGCACUCAUCCC 17 595
BCLllA-137 + U CCAU G U G C AG AACG AG 17 596
BCLllA-122 + UCCAUGUGCAGAACGAGGGG 20 597
BCLllA-126 - UCCCCUCGUUCUGCACA 17 598 BCLllA-54 + UCCCCUUCUGGAGCUCCCAA 20 599
BCLllA-31 - UCCCGUGGAGGUUGGCAUCC 20 600
BCLllA-5 + UCCCGU UUGCUUAAGUGCUG 20 601
BCLllA-110 - UCCUCCCCUCGUUCUGCACA 20 602
BCLllA-94 + UCGAUUGGUGAAGGGGA 17 603
BCLllA-45 + UCGAUUGGUGAAGGGGAAGG 20 604
BCLllA-117 + UCUGCACUCAUCCCAGGCGU 20 605
BCLllA-51 + UCUGGCACUGCCCACAGGUG 20 606
BCLllA-59 + UCUGUAAGAAUGGCUUCAAG 20 607
BCLllA-14 - UGAACCAGACCACGGCCCGU 20 608
BCLllA-132 + UGCACUCAUCCCAGGCG 17 609
BCLllA-129 - UGCAGAAUAUGCCCCGC 17 610
BCLllA-22 - UGCCAGAUGAACUUCCCAUU 20 611
BCLllA-82 + UGCUAUGUGUUCCUGUU 17 612
BCLllA-88 + UGGAUGCCAACCUCCAC 17 613
BCLllA-58 + UGGUUCAUCAUCUGUAAGAA 20 614
BCLllA-33 - UGU UUAUCAACGUCAUCUAG 20 615
BCLllA-80 - UUAUCAACGUCAUCUAG 17 616
BCLllA-25 - UUAUUUUUAUCGAGCACAAA 20 617
BCLllA-108 + U UCAUCAUCUGUAAGAA 17 618
BCLllA-91 + UUCAUCUCGAUUGGUGA 17 619
BCLllA-4 + UUCCCGUU UGCUUAAGUGCU 20 620
BCLllA-116 + U UCUGCACUCAUCCCAGGCG 20 621
BCLllA-43 + UUUCAUCUCGAUUGGUGAAG 20 622
BCLllA-72 - UU UUUAUCGAGCACAAA 17 623
BCLllA-41 + UU UUUCAUCUCGAUUGGUGA 20 624
Table 2D provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fourth tier parameters and are selected based on presence in the coding sequence. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non- complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. Table 2D 4th Tier
DNA Target Site SEQ ID gRNA Name Targeting domain
Strand Length NO
BCLllA-140 - AACAGCCAUUCACCAGUGCA 20 625
BCLllA-141 - CAACACGCACAGAACACUCA 20 626
BCLllA-142 - AUCUACUUAGAAAGCGAACA 20 627
BCLllA-143 - ACGGAAGUCCCCUGACCCCG 20 628
BCLllA-144 - CGGAAGUCCCCUGACCCCGC 20 629
BCLllA-145 - AGUCCCCUGACCCCGCGGGU 20 630
BCLllA-146 - CCGCGGGUUGGUAUCCCUUC 20 631
BCLllA-147 - GUUGGUAUCCCUUCAGGACU 20 632
BCLllA-148 - CCUUCCCAGCCACCUCUCCA 20 633
BCLllA-149 - CUUCCCAGCCACCUCUCCAU 20 634
BCLllA-150 - UUUAACCUGCUAAGAAUACC 20 635
BCLllA-151 - ACCAGGAUCAGUAUCGAGAG 20 636
BCLllA-152 - UCAGUAUCGAGAGAGGCUUC 20 637
BCLllA-153 - AUCGAGAGAGGCUUCCGGCC 20 638
BCLllA-154 - GAGGCUUCCGGCCUGGCAGA 20 639
BCLllA-155 - AGGCUUCCGGCCUGGCAGAA 20 640
BCLllA-156 - UCCACCACCGAGACAUCACU 20 641
BCLllA-157 - CCCCCACCGCAUAGAGCGCC 20 642
BCLllA-158 - CCCCACCGCAUAGAGCGCCU 20 643
BCLllA-159 - CCCACCGCAUAGAGCGCCUG 20 644
BCLllA-160 - CCACCGCAUAGAGCGCCUGG 20 645
BCLllA-161 - CCGCAUAGAGCGCCUGGGGG 20 646
BCLllA-162 - GCGCCUGGGGGCGGAAGAGA 20 647
BCLllA-163 - GGGGGCGGAAGAGAUGGCCC 20 648
BCLllA-164 - AUCACCCGAGUGCCUUUGAC 20 649
BCLllA-165 - UCACCCGAGUGCCUUUGACA 20 650
BCLllA-166 - GUGCCUUUGACAGGGUGCUG 20 651
BCLllA-167 - GGUGCUGCGGUUGAAUCCAA 20 652
BCLllA-168 - GCGGUUGAAUCCAAUGGCUA 20 653
BCLllA-169 - GGCUAUGGAGCCUCCCGCCA 20 654
BCLllA-170 - CUCCCGCCAUGGAUUUCUCU 20 655
BCLllA-171 - CUCUAGGAGACUUAGAGAGC 20 656
BCLllA-172 - AGGAGACUUAGAGAGCUGGC 20 657
BCLllA-173 - GGAGACUUAGAGAGCUGGCA 20 658
BCLllA-174 - UCUAGCCCACCGCUGUCCCC 20 659
BCLllA-175 - GCCCACCGCUGUCCCCAGGC 20 660
BCLllA-176 - GCCGGCCCAGCCCUAUGCAA 20 661
BCLllA-177 - UUACUGCAACCAUUCCAGCC 20 662
BCLllA-178 - AGGUAGCAAGCCGCCCUUCC 20 663 BCLllA-179 - CCCUCCUCCCUCCCAGCCCC 20 664
BCLllA-180 - UCCAAGUCAUGCGAGUUCUG 20 665
BCLllA-181 - GUUCAAAUUUCAGAGCAACC 20 666
BCLllA-182 - CAAAUUUCAGAGCAACCUGG 20 667
BCLllA-183 - AGAGCAACCUGGUGGUGCAC 20 668
BCLllA-184 - GGUGCACCGGCGCAGCCACA 20 669
BCLllA-185 - GUGCACCGGCGCAGCCACAC 20 670
BCLllA-186 - GUGCGACCACGCGUGCACCC 20 671
BCLllA-187 - GCACAAAUCGUCCCCCAUGA 20 672
BCLllA-188 - AUGACGGUCAAGUCCGACGA 20 673
BCLllA-189 - UCUCUCCACCGCCAGCUCCC 20 674
BCLllA-190 - ACCGCCAGCUCCCCGGAACC 20 675
BCLllA-191 - GGAACCCGGCACCAGCGACU 20 676
BCLllA-192 - ACCCGGCACCAGCGACUUGG 20 677
BCLllA-193 - CCCGGCACCAGCGACUUGGU 20 678
BCLllA-194 - CAG CAG CG CG C U CAAG U CCG 20 679
BCLllA-195 - CAGCGCGCUCAAGUCCGUGG 20 680
BCLllA-196 - GAACGACCCCAACCUGAUCC 20 681
BCLllA-197 - CCCAACCUGAUCCCGGAGAA 20 682
BCLllA-198 - CCAACCUGAUCCCGGAGAAC 20 683
BCLllA-199 - CAACCUGAUCCCGGAGAACG 20 684
BCLllA-200 - GAUCCCGGAGAACGGGGACG 20 685
BCLllA-201 - CCCGGAGAACGGGGACGAGG 20 686
BCLllA-202 - GAACGGGGACGAGGAGGAAG 20 687
BCLllA-203 - CGGGGACGAGGAGGAAGAGG 20 688
BCLllA-204 - GGAGGAAGAGGAGGACGACG 20 689
BCLllA-205 - AGAGGAGGACGACGAGGAAG 20 690
BCLllA-206 - CGACGAGGAAGAGGAAGAAG 20 691
BCLllA-207 - CGAGGAAGAGGAAGAAGAGG 20 692
BCLllA-208 - AGAGGAAGAAGAGGAGGAAG 20 693
BCLllA-209 - GGAAGAAGAGGAGGAAGAGG 20 694
BCLllA-210 - AGAAGAGGAGGAAGAGGAGG 20 695
BCLllA-211 - AGAGGAGGAAGAGGAGGAGG 20 696
BCLllA-212 + UCCUCCUCGUCCCCGUUCUC 20 697
BCLllA-213 + CCUCCUCGUCCCCGUUCUCC 20 698
BCLllA-214 + CGUCCCCGUUCUCCGGGAUC 20 699
BCLllA-215 + CCCGUUCUCCGGGAUCAGGU 20 700
BCLllA-216 + CCGUUCUCCGGGAUCAGGUU 20 701
BCLllA-217 + CGUUCUCCGGGAUCAGGUUG 20 702
BCLllA-218 + GUCGUUCUCGCUCUUGAACU 20 703
BCLllA-219 + GCUCUUGAACUUGGCCACCA 20 704
BCLllA-220 + CACGGACUUGAGCGCGCUGC 20 705 BCLllA-221 + GGCGCUGCCCACCAAGUCGC 20 706
BCLllA-222 + GCCCACCAAGUCGCUGGUGC 20 707
BCLllA-223 + CCCACCAAGUCGCUGGUGCC 20 708
BCLllA-224 + AAGUCGCUGGUGCCGGGUUC 20 709
BCLllA-225 + AGUCGCUGGUGCCGGGUUCC 20 710
BCLllA-226 + GUCGCUGGUGCCGGGU UCCG 20 711
BCLllA-227 + GGUGCCGGGUUCCGGGGAGC 20 712
BCLllA-228 + GCCGGGUUCCGGGGAGCUGG 20 713
BCLllA-229 + GGGU UCCGGGGAGCUGGCGG 20 714
BCLllA-230 + GGCGGUGGAGAGACCGUCGU 20 715
BCLllA-231 + GUCGUCGGACUUGACCGUCA 20 716
BCLllA-232 + UCGUCGGACUUGACCGUCAU 20 717
BCLllA-233 + CGUCGGACU UGACCGUCAUG 20 718
BCLllA-234 + GUCGGACUUGACCGUCAUGG 20 719
BCLllA-235 + UGUGCAUGUGCGUCUUCAUG 20 720
BCLllA-236 + CAUGUGGCGCUUCAGCU UGC 20 721
BCLllA-237 + GGCGCUUCAGCUUGCUGGCC 20 722
BCLllA-238 + GCGCUUCAGCUUGCUGGCCU 20 723
BCLllA-239 + UGCUGGCCUGGGUGCACGCG 20 724
BCLllA-240 + GGGUGCACGCGUGGUCGCAC 20 725
BCLllA-241 + GUCGCACAGGU UGCACU UGU 20 726
BCLllA-242 + UCGCACAGGUUGCACUUGUA 20 727
BCLllA-243 + UGUAGGGCUUCUCGCCCGUG 20 728
BCLllA-244 + UCUCGCCCGUGUGGCUGCGC 20 729
BCLllA-245 + GGCUGCGCCGGUGCACCACC 20 730
BCLllA-246 + GCCGCAGAACUCGCAUGACU 20 731
BCLllA-247 + UCGCAUGACU UGGACU UGAC 20 732
BCLllA-248 + CGCAUGACUUGGACUUGACC 20 733
BCLllA-249 + GCAUGACUUGGACUUGACCG 20 734
BCLllA-250 + CAUGACUUGGACUUGACCGG 20 735
BCLllA-251 + ACUUGGACUUGACCGGGGGC 20 736
BCLllA-252 + CUUGGACUUGACCGGGGGCU 20 737
BCLllA-253 + GGACUUGACCGGGGGCUGGG 20 738
BCLllA-254 + GACU UGACCGGGGGCUGGGA 20 739
BCLllA-255 + UUGACCGGGGGCUGGGAGGG 20 740
BCLllA-256 + ACCGGGGGCUGGGAGGGAGG 20 741
BCLllA-257 + CCGGGGGCUGGGAGGGAGGA 20 742
BCLllA-258 + CGGGGGCUGGGAGGGAGGAG 20 743
BCLllA-259 + GGGCUGGGAGGGAGGAGGGG 20 744
BCLllA-260 + GGAGGAGGGGCGGAUUGCAG 20 745
BCLllA-261 + GGAGGGGCGGAUUGCAGAGG 20 746
BCLllA-262 + GAGGGGCGGAUUGCAGAGGA 20 747 BCLllA-263 + GGGCGGAUUGCAGAGGAGGG 20 748
BCLllA-264 + GGCGGAUUGCAGAGGAGGGA 20 749
BCLllA-265 + GCGGAUUGCAGAGGAGGGAG 20 750
BCLllA-266 + CGGAUUGCAGAGGAGGGAGG 20 751
BCLllA-267 + GGAUUGCAGAGGAGGGAGGG 20 752
BCLllA-268 + GAUUGCAGAGGAGGGAGGGG 20 753
BCLllA-269 + GAGGGAGGGGGGGCGUCGCC 20 754
BCLllA-270 + GAGGGGGGGCGUCGCCAGGA 20 755
BCLllA-271 + AGGGGGGGCGUCGCCAGGAA 20 756
BCLllA-272 + GGGGGCGUCGCCAGGAAGGG 20 757
BCLllA-273 + AGGAAGGGCGGCUUGCUACC 20 758
BCLllA-274 + AGGGCGGCUUGCUACCUGGC 20 759
BCLllA-275 + GGCUUGCUACCUGGCUGGAA 20 760
BCLllA-276 + GGUUGCAGUAACCUUUGCAU 20 761
BCLllA-277 + GU UGCAGUAACCUUUGCAUA 20 762
BCLllA-278 + CAGUAACCUUUGCAUAGGGC 20 763
BCLllA-279 + AGUAACCUUUGCAUAGGGCU 20 764
BCLllA-280 + ACCUU UGCAUAGGGCUGGGC 20 765
BCLllA-281 + UGCAUAGGGCUGGGCCGGCC 20 766
BCLllA-282 + GCAUAGGGCUGGGCCGGCCU 20 767
BCLllA-283 + CAUAGGGCUGGGCCGGCCUG 20 768
BCLllA-284 + CUGGGCCGGCCUGGGGACAG 20 769
BCLllA-285 + GGCCGGCCUGGGGACAGCGG 20 770
BCLllA-286 + GCCGGCCUGGGGACAGCGGU 20 771
BCLllA-287 + AAGUCUCCUAGAGAAAUCCA 20 772
BCLllA-288 + UCUCCUAGAGAAAUCCAUGG 20 773
BCLllA-289 + CUCCUAGAGAAAUCCAUGGC 20 774
BCLllA-290 + CUAGAGAAAUCCAUGGCGGG 20 775
BCLllA-291 + GCGGGAGGCUCCAUAGCCAU 20 776
BCLllA-292 + CAACCGCAGCACCCUGUCAA 20 111
BCLllA-293 + AGCACCCUG UCAAAGGCACU 20 778
BCLllA-294 + GCACCCUGUCAAAGGCACUC 20 779
BCLllA-295 + UGUCAAAGGCACUCGGGUGA 20 780
BCLllA-296 + GUCAAAGGCACUCGGGUGAU 20 781
BCLllA-297 + AAAGGCACUCGGGUGAUGGG 20 782
BCLllA-298 + CACUCGGGUGAUGGGUGGCC 20 783
BCLllA-299 + ACUCGGGUGAUGGGUGGCCA 20 784
BCLllA-300 + GGGCCAUCUCUUCCGCCCCC 20 785
BCLllA-301 + CCGCCCCCAGGCGCUCUAUG 20 786
BCLllA-302 + CCCCCAGGCGCUCUAUGCGG 20 787
BCLllA-303 + CCCCAGGCGCUCUAUGCGGU 20 788
BCLllA-304 + CCCAGGCGCUCUAUGCGGUG 20 789 BCLllA-305 + CCAGGCGCUCUAUGCGGUGG 20 790
BCLllA-306 + UGGGGGUCCAAGUGAUGUCU 20 791
BCLllA-307 + GGGUCCAAGUGAUGUCUCGG 20 792
BCLllA-308 + UCCAAGUGAUGUCUCGGUGG 20 793
BCLllA-309 + GUCUCGGUGGUGGACUAAAC 20 794
BCLllA-310 + UCUCGGUGGUGGACUAAACA 20 795
BCLllA-311 + CUCGGUGGUGGACUAAACAG 20 796
BCLllA-312 + UCGGUGGUGGACUAAACAGG 20 797
BCLllA-313 + CGGUGGUGGACUAAACAGGG 20 798
BCLllA-314 + GGUGGUGGACUAAACAGGGG 20 799
BCLllA-315 + UGGACUAAACAGGGGGGGAG 20 800
BCLllA-316 + GGACUAAACAGGGGGGGAGU 20 801
BCLllA-317 + CUAAACAGGGGGGGAGUGGG 20 802
BCLllA-318 + GUGGAAAGCGCCCUUCUGCC 20 803
BCLllA-319 + AAAGCGCCCUUCUGCCAGGC 20 804
BCLllA-320 + GCCUCUCUCGAUACUGAUCC 20 805
BCLllA-321 + CUGAUCCUGGUAUUCU UAGC 20 806
BCLllA-322 + UGGUAUUCUUAGCAGGUUAA 20 807
BCLllA-323 + GGUAUUCUUAGCAGGUUAAA 20 808
BCLllA-324 + GUAUUCUUAGCAGGUUAAAG 20 809
BCLllA-325 + UGUCUGCAAUAUGAAUCCCA 20 810
BCLllA-326 + GCAAUAUGAAUCCCAUGGAG 20 811
BCLllA-327 + AUAUGAAUCCCAUGGAGAGG 20 812
BCLllA-328 + GAAUCCCAUGGAGAGGUGGC 20 813
BCLllA-329 + AAUCCCAUGGAGAGGUGGCU 20 814
BCLllA-330 + CCAUGGAGAGGUGGCUGGGA 20 815
BCLllA-331 + CAUUCUGCACCUAGUCCUGA 20 816
BCLllA-332 + AUUCUGCACCUAGUCCUGAA 20 817
BCLllA-333 + CCUGAAGGGAUACCAACCCG 20 818
BCLllA-334 + CUGAAGGGAUACCAACCCGC 20 819
BCLllA-335 + UGAAGGGAUACCAACCCGCG 20 820
BCLllA-336 + GGAUACCAACCCGCGGGGUC 20 821
BCLllA-337 + GAUACCAACCCGCGGGGUCA 20 822
BCLllA-338 + AUACCAACCCGCGGGGUCAG 20 823
BCLllA-339 + U UGCAAGAGAAACCAUGCAC 20 824
BCLllA-340 + AGAAACCAUGCACUGGUGAA 20 825
BCLllA-341 + AGUUGUACAUGUGUAGCUGC 20 826
BCLllA-342 + GUUGUACAUGUGUAGCUGCU 20 827
BCLllA-343 - AGCCAUUCACCAGUGCA 17 828
BCLllA-344 - CACGCACAGAACACUCA 17 829
BCLllA-345 - UACUUAGAAAGCGAACA 17 830
BCLllA-346 - GAAGUCCCCUGACCCCG 17 831 BCLllA-347 - AAGUCCCCUGACCCCGC 17 832
BCLllA-348 - CCCCUGACCCCGCGGGU 17 833
BCLllA-349 - CGGGUUGGUAUCCCUUC 17 834
BCLllA-350 - GGUAUCCCUUCAGGACU 17 835
BCLllA-351 - UCCCAGCCACCUCUCCA 17 836
BCLllA-352 - CCCAGCCACCUCUCCAU 17 837
BCLllA-353 - AACCUGCUAAGAAUACC 17 838
BCLllA-354 - AGGAUCAGUAUCGAGAG 17 839
BCLllA-355 - GUAUCGAGAGAGGCUUC 17 840
BCLllA-356 - GAGAGAGGCUUCCGGCC 17 841
BCLllA-357 - GCUUCCGGCCUGGCAGA 17 842
BCLllA-358 - CUUCCGGCCUGGCAGAA 17 843
BCLllA-359 - ACCACCGAGACAUCACU 17 844
BCLllA-360 - CCACCGCAUAGAGCGCC 17 845
BCLllA-361 - CACCGCAUAGAGCGCCU 17 846
BCLllA-362 - ACCGCAUAGAGCGCCUG 17 847
BCLllA-363 - CCGCAUAGAGCGCCUGG 17 848
BCLllA-364 - CAUAGAGCGCCUGGGGG 17 849
BCLllA-365 - CCUGGGGGCGGAAGAGA 17 850
BCLllA-366 - GGCGGAAGAGAUGGCCC 17 851
BCLllA-367 - ACCCGAGUGCCUUUGAC 17 852
BCLllA-368 - CCCGAGUGCCUUUGACA 17 853
BCLllA-369 - CCUUUGACAGGGUGCUG 17 854
BCLllA-370 - GCUGCGGUUGAAUCCAA 17 855
BCLllA-371 - GUUGAAUCCAAUGGCUA 17 856
BCLllA-372 - UAUGGAGCCUCCCGCCA 17 857
BCLllA-373 - CCGCCAUGGAUUUCUCU 17 858
BCLllA-374 - UAGGAGACUUAGAGAGC 17 859
BCLllA-375 - AGACUUAGAGAGCUGGC 17 860
BCLllA-376 - GACUUAGAGAGCUGGCA 17 861
BCLllA-377 - AGCCCACCGCUGUCCCC 17 862
BCLllA-378 - CACCGCUGUCCCCAGGC 17 863
BCLllA-379 - GGCCCAGCCCUAUGCAA 17 864
BCLllA-380 - CUGCAACCAUUCCAGCC 17 865
BCLllA-381 - UAGCAAGCCGCCCUUCC 17 866
BCLllA-382 - UCCUCCCUCCCAGCCCC 17 867
BCLllA-383 - AAGUCAUGCGAGUUCUG 17 868
BCLllA-384 - CAAAUUUCAGAGCAACC 17 869
BCLllA-385 - AUUUCAGAGCAACCUGG 17 870
BCLllA-386 - GCAACCUGGUGGUGCAC 17 871
BCLllA-387 - GCACCGGCGCAGCCACA 17 872
BCLllA-388 - CACCGGCGCAGCCACAC 17 873 BCLllA-389 - CGACCACGCGUGCACCC 17 874
BCLllA-390 - CAAAUCGUCCCCCAUGA 17 875
BCLllA-391 - ACGGUCAAGUCCGACGA 17 876
BCLllA-392 - CUCCACCGCCAGCUCCC 17 877
BCLllA-393 - GCCAGCUCCCCGGAACC 17 878
BCLllA-394 - ACCCGGCACCAGCGACU 17 879
BCLllA-395 - CGGCACCAGCGACUUGG 17 880
BCLllA-396 - GGCACCAGCGACU UGGU 17 881
BCLllA-397 - CAGCGCGCUCAAGUCCG 17 882
BCLllA-398 - CGCGCUCAAGUCCGUGG 17 883
BCLllA-399 - CGACCCCAACCUGAUCC 17 884
BCLllA-400 - AACCUGAUCCCGGAGAA 17 885
BCLllA-401 - ACCUGAUCCCGGAGAAC 17 886
BCLllA-402 - CCUGAUCCCGGAGAACG 17 887
BCLllA-403 - CCCGGAGAACGGGGACG 17 888
BCLllA-404 - GGAGAACGGGGACGAGG 17 889
BCLllA-405 - CGGGGACGAGGAGGAAG 17 890
BCLllA-406 - GGACGAGGAGGAAGAGG 17 891
BCLllA-407 - GGAAGAGGAGGACGACG 17 892
BCLllA-408 - GGAGGACGACGAGGAAG 17 893
BCLllA-409 - CGAGGAAGAGGAAGAAG 17 894
BCLllA-410 - GGAAGAGGAAGAAGAGG 17 895
BCLllA-411 - GGAAGAAGAGGAGGAAG 17 896
BCLllA-412 - AGAAGAGGAGGAAGAGG 17 897
BCLllA-413 - AGAGGAGGAAGAGGAGG 17 898
BCLllA-414 - GGAGGAAGAGGAGGAGG 17 899
BCLllA-415 + UCCUCGUCCCCGUUCUC 17 900
BCLllA-416 + CCUCGUCCCCGUUCUCC 17 901
BCLllA-417 + CCCCGUUCUCCGGGAUC 17 902
BCLllA-418 + GU UCUCCGGGAUCAGGU 17 903
BCLllA-419 + UUCUCCGGGAUCAGGU U 17 904
BCLllA-420 + UCUCCGGGAUCAGGUUG 17 905
BCLllA-421 + GU UCUCGCUCUUGAACU 17 906
BCLllA-422 + CUUGAACUUGGCCACCA 17 907
BCLllA-423 + GGACU UGAGCGCGCUGC 17 908
BCLllA-424 + GCUGCCCACCAAGUCGC 17 909
BCLllA-425 + CACCAAGUCGCUGGUGC 17 910
BCLllA-426 + ACCAAGUCGCUGGUGCC 17 911
BCLllA-427 + UCGCUGGUGCCGGGUUC 17 912
BCLllA-428 + CGCUGGUGCCGGGUUCC 17 913
BCLllA-429 + GCUGGUGCCGGGUUCCG 17 914
BCLllA-430 + GCCGGGUUCCGGGGAGC 17 915 BCLllA-431 + GGGU UCCGGGGAGCUGG 17 916
BCLllA-432 + U UCCGGGGAGCUGGCGG 17 917
BCLllA-433 + GGUGGAGAGACCGUCGU 17 918
BCLllA-434 + GUCGGACUUGACCGUCA 17 919
BCLllA-435 + UCGGACUUGACCGUCAU 17 920
BCLllA-436 + CGGACUUGACCGUCAUG 17 921
BCLllA-437 + GGACUUGACCGUCAUGG 17 922
BCLllA-438 + GCAUGUGCGUCUUCAUG 17 923
BCLllA-439 + GUGGCGCU UCAGCUUGC 17 924
BCLllA-440 + GCUUCAGCUUGCUGGCC 17 925
BCLllA-441 + CUUCAGCUUGCUGGCCU 17 926
BCLllA-442 + UGGCCUGGGUGCACGCG 17 927
BCLllA-443 + UGCACGCGUGGUCGCAC 17 928
BCLllA-444 + GCACAGGUUGCACUUGU 17 929
BCLllA-445 + CACAGGUUGCACUUGUA 17 930
BCLllA-446 + AGGGCUUCUCGCCCGUG 17 931
BCLllA-447 + CGCCCGUGUGGCUGCGC 17 932
BCLllA-448 + UGCGCCGGUGCACCACC 17 933
BCLllA-449 + GCAGAACUCGCAUGACU 17 934
BCLllA-450 + CAUGACUUGGACUUGAC 17 935
BCLllA-451 + AUGACUUGGACUUGACC 17 936
BCLllA-452 + UGACUUGGACUUGACCG 17 937
BCLllA-453 + GACU UGGACUUGACCGG 17 938
BCLllA-454 + UGGACUUGACCGGGGGC 17 939
BCLllA-455 + GGACUUGACCGGGGGCU 17 940
BCLllA-456 + CUUGACCGGGGGCUGGG 17 941
BCLllA-457 + UUGACCGGGGGCUGGGA 17 942
BCLllA-458 + ACCGGGGGCUGGGAGGG 17 943
BCLllA-459 + GGGGGCUGGGAGGGAGG 17 944
BCLllA-460 + GGGGCUGGGAGGGAGGA 17 945
BCLllA-461 + GGGCUGGGAGGGAGGAG 17 946
BCLllA-462 + CUGGGAGGGAGGAGGGG 17 947
BCLllA-463 + GGAGGGGCGGAUUGCAG 17 948
BCLllA-464 + GGGGCGGAUUGCAGAGG 17 949
BCLllA-465 + GGGCGGAUUGCAGAGGA 17 950
BCLllA-466 + CGGAUUGCAGAGGAGGG 17 951
BCLllA-467 + GGAUUGCAGAGGAGGGA 17 952
BCLllA-468 + GAUUGCAGAGGAGGGAG 17 953
BCLllA-469 + AUUGCAGAGGAGGGAGG 17 954
BCLllA-470 + UUGCAGAGGAGGGAGGG 17 955
BCLllA-471 + UGCAGAGGAGGGAGGGG 17 956
BCLllA-472 + GGAGGGGGGGCGUCGCC 17 957 BCLllA-473 + GGGGGGCGUCGCCAGGA 17 958
BCLllA-474 + GGGGGCGUCGCCAGGAA 17 959
BCLllA-475 + GGCGUCGCCAGGAAGGG 17 960
BCLllA-476 + AAGGGCGGCUUGCUACC 17 961
BCLllA-477 + GCGGCUUGCUACCUGGC 17 962
BCLllA-478 + U UGCUACCUGGCUGGAA 17 963
BCLllA-479 + UGCAGUAACCUU UGCAU 17 964
BCLllA-480 + GCAGUAACCUUUGCAUA 17 965
BCLllA-481 + UAACCUUUGCAUAGGGC 17 966
BCLllA-482 + AACCU UUGCAUAGGGCU 17 967
BCLllA-483 + U UUGCAUAGGGCUGGGC 17 968
BCLllA-484 + AUAGGGCUGGGCCGGCC 17 969
BCLllA-485 + UAGGGCUGGGCCGGCCU 17 970
BCLllA-486 + AGGGCUGGGCCGGCCUG 17 971
BCLllA-487 + GGCCGGCCUGGGGACAG 17 972
BCLllA-488 + CGGCCUGGGGACAGCGG 17 973
BCLllA-489 + GGCCUGGGGACAGCGGU 17 974
BCLllA-490 + UCUCCUAGAGAAAUCCA 17 975
BCLllA-491 + CCUAGAGAAAUCCAUGG 17 976
BCLllA-492 + CUAGAGAAAUCCAUGGC 17 977
BCLllA-493 + GAGAAAUCCAUGGCGGG 17 978
BCLllA-494 + GGAGGCUCCAUAGCCAU 17 979
BCLllA-495 + CCGCAGCACCCUGUCAA 17 980
BCLllA-496 + ACCCUGUCAAAGGCACU 17 981
BCLllA-497 + CCCUGUCAAAGGCACUC 17 982
BCLllA-498 + CAAAGGCACUCGGGUGA 17 983
BCLllA-499 + AAAGGCACUCGGGUGAU 17 984
BCLllA-500 + GGCACUCGGGUGAUGGG 17 985
BCLllA-501 + UCGGGUGAUGGGUGGCC 17 986
BCLllA-502 + CGGGUGAUGGGUGGCCA 17 987
BCLllA-503 + CCAUCUCU UCCGCCCCC 17 988
BCLllA-504 + CCCCCAGGCGCUCUAUG 17 989
BCLllA-505 + CCAGGCGCUCUAUGCGG 17 990
BCLllA-506 + CAGGCGCUCUAUGCGGU 17 991
BCLllA-507 + AGGCGCUCUAUGCGGUG 17 992
BCLllA-508 + GGCGCUCUAUGCGGUGG 17 993
BCLllA-509 + GGGUCCAAGUGAUGUCU 17 994
BCLllA-510 + UCCAAGUGAUGUCUCGG 17 995
BCLllA-511 + AAGUGAUGUCUCGGUGG 17 996
BCLllA-512 + UCGGUGGUGGACUAAAC 17 997
BCLllA-513 + CGGUGGUGGACUAAACA 17 998
BCLllA-514 + GGUGGUGGACUAAACAG 17 999 BCLllA-515 + GUGGUGGACUAAACAGG 17 1000
BCLllA-516 + UGGUGGACUAAACAGGG 17 1001
BCLllA-517 + GGUGGACUAAACAGGGG 17 1002
BCLllA-518 + ACUAAACAGGGGGGGAG 17 1003
BCLllA-519 + CUAAACAGGGGGGGAGU 17 1004
BCLllA-520 + AACAGGGGGGGAGUGGG 17 1005
BCLllA-521 + GAAAGCGCCCUUCUGCC 17 1006
BCLllA-522 + GCGCCCUUCUGCCAGGC 17 1007
BCLllA-523 + UCUCUCGAUACUGAUCC 17 1008
BCLllA-524 + AUCCUGGUAUUCUUAGC 17 1009
BCLllA-525 + UAUUCUUAGCAGGUUAA 17 1010
BCLllA-526 + AUUCUUAGCAGGUUAAA 17 1011
BCLllA-527 + UUCUUAGCAGGUUAAAG 17 1012
BCLllA-528 + CUGCAAUAUGAAUCCCA 17 1013
BCLllA-529 + AUAUGAAUCCCAUGGAG 17 1014
BCLllA-530 + UGAAUCCCAUGGAGAGG 17 1015
BCLllA-531 + UCCCAUGGAGAGGUGGC 17 1016
BCLllA-532 + CCCAUGGAGAGGUGGCU 17 1017
BCLllA-533 + UGGAGAGGUGGCUGGGA 17 1018
BCLllA-534 + UCUGCACCUAGUCCUGA 17 1019
BCLllA-535 + CUGCACCUAGUCCUGAA 17 1020
BCLllA-536 + GAAGGGAUACCAACCCG 17 1021
BCLllA-537 + AAGGGAUACCAACCCGC 17 1022
BCLllA-538 + AGGGAUACCAACCCGCG 17 1023
BCLllA-539 + UACCAACCCGCGGGGUC 17 1024
BCLllA-540 + ACCAACCCGCGGGGUCA 17 1025
BCLllA-541 + CCAACCCGCGGGGUCAG 17 1026
BCLllA-542 + CAAGAGAAACCAUGCAC 17 1027
BCLllA-543 + AACCAUGCACUGGUGAA 17 1028
BCLllA-544 + UGUACAUGUGUAGCUGC 17 1029
BCLllA-545 + GUACAUGUGUAGCUGCU 17 1030
BCLllA-546 - AGAGGAGGAGGAGGAGCUGA 20 1031
BCLllA-547 - AGGAGCUGACGGAGAGCGAG 20 1032
BCLllA-548 - GGAGCUGACGGAGAGCGAGA 20 1033
BCLllA-549 - GCUGACGGAGAGCGAGAGGG 20 1034
BCLllA-550 - GAGAGCGAGAGGGUGGACUA 20 1035
BCLllA-551 - GAGAGGGUGGACUACGGCUU 20 1036
BCLllA-552 - AGAGGGUGGACUACGGCUUC 20 1037
BCLllA-553 - CUACGGCU UCGGGCUGAGCC 20 1038
BCLllA-554 - CGGCUUCGGGCUGAGCCUGG 20 1039
BCLllA-555 - CUUCGGGCUGAGCCUGGAGG 20 1040
BCLllA-556 - GCCACCACGAGAACAGCUCG 20 1041 BCLllA-557 - CCACCACGAGAACAGCUCGC 20 1042
BCLllA-558 - CACCACGAGAACAGCUCGCG 20 1043
BCLllA-559 - CGAGAACAGCUCGCGGGGCG 20 1044
BCLllA-560 - CAGCUCGCGGGGCGCGGUCG 20 1045
BCLllA-561 - AGCUCGCGGGGCGCGGUCGU 20 1046
BCLllA-562 - GCGGGGCGCGGUCGUGGGCG 20 1047
BCLllA-563 - CGGGGCGCGGUCGUGGGCGU 20 1048
BCLllA-564 - CGCCCUGCCCGACGUCAUGC 20 1049
BCLllA-565 - GCCCUGCCCGACGUCAUGCA 20 1050
BCLllA-566 - GCCCGACGUCAUGCAGGGCA 20 1051
BCLllA-567 - CUCCAUGCAGCACUUCAGCG 20 1052
BCLllA-568 - CUUCAGCGAGGCCUUCCACC 20 1053
BCLllA-569 - CGAGGCCUUCCACCAGGUCC 20 1054
BCLllA-570 - GAGGCCUUCCACCAGGUCCU 20 1055
BCLllA-571 - CUGGGCGAGAAGCAUAAGCG 20 1056
BCLllA-572 - GAAGCAUAAGCGCGGCCACC 20 1057
BCLllA-573 - UAAGCGCGGCCACCUGGCCG 20 1058
BCLllA-574 - CGGCCACCUGGCCGAGGCCG 20 1059
BCLllA-575 - GGCCACCUGGCCGAGGCCGA 20 1060
BCLllA-576 - UGGCCGAGGCCGAGGGCCAC 20 1061
BCLllA-577 - GGCCGAGGCCGAGGGCCACA 20 1062
BCLllA-578 - GGACACUUGCGACGAAGACU 20 1063
BCLllA-579 - CACUUGCGACGAAGACUCGG 20 1064
BCLllA-580 - UGCGACGAAGACUCGGUGGC 20 1065
BCLllA-581 - AGACUCGGUGGCCGGCGAGU 20 1066
BCLllA-582 - GAGUCGGACCGCAUAGACGA 20 1067
BCLllA-583 - AUAGACGAUGGCACUGUUAA 20 1068
BCLllA-584 - GAUGGCACUGUUAAUGGCCG 20 1069
BCLllA-585 - UAAUGGCCGCGGCUGCUCCC 20 1070
BCLllA-586 - AAUGGCCGCGGCUGCUCCCC 20 1071
BCLllA-587 - CGGCUGCUCCCCGGGCGAGU 20 1072
BCLllA-588 - CUCCCCGGGCGAGUCGGCCU 20 1073
BCLllA-589 - UCCCCGGGCGAGUCGGCCUC 20 1074
BCLllA-590 - CCCCGGGCGAGUCGGCCUCG 20 1075
BCLllA-591 - CCCGGGCGAGUCGGCCUCGG 20 1076
BCLllA-592 - CCGGGCGAGUCGGCCUCGGG 20 1077
BCLllA-593 - CCUGUCCAAAAAGCUGCUGC 20 1078
BCLllA-594 - CUGUCCAAAAAGCUGCUGCU 20 1079
BCLllA-595 - UAAGCGCAUCAAGCUCGAGA 20 1080
BCLllA-596 - GAAGGAGUUCGACCUGCCCC 20 1081
BCLllA-597 - CCCGGCCGCGAUGCCCAACA 20 1082
BCLllA-598 - CGGAGAACGUGUACUCGCAG 20 1083 BCLllA-599 - GUGUACUCGCAGUGGCUCGC 20 1084
BCLllA-600 - GCAGUGGCUCGCCGGCUACG 20 1085
BCLllA-601 - UCGCCGGCUACGCGGCCUCC 20 1086
BCLllA-602 - AAAGAUCCCUUCCUUAGCUU 20 1087
BCLllA-603 - AUCGCCUUUUGCCUCCUCGU 20 1088
BCLllA-604 - CUCCUCGUCGGAGCACUCCU 20 1089
BCLllA-605 - UCGGAGCACUCCUCGGAGAA 20 1090
BCLllA-606 - CGGAGCACUCCUCGGAGAAC 20 1091
BCLllA-607 - UUGCGCUUCUCCACACCGCC 20 1092
BCLllA-608 - UGCGCUUCUCCACACCGCCC 20 1093
BCLllA-609 - GCGCUUCUCCACACCGCCCG 20 1094
BCLllA-610 - CUCCACACCGCCCGGGGAGC 20 1095
BCLllA-611 - ACACCGCCCGGGGAGCUGGA 20 1096
BCLllA-612 - CCGCCCGGGGAGCUGGACGG 20 1097
BCLllA-613 - CGCCCGGGGAGCUGGACGGA 20 1098
BCLllA-614 - GGAGCUGGACGGAGGGAUCU 20 1099
BCLllA-615 - GAGCUGGACGGAGGGAUCUC 20 1100
BCLllA-616 - AGCUGGACGGAGGGAUCUCG 20 1101
BCLllA-617 - GGAGGGAUCUCGGGGCGCAG 20 1102
BCLllA-618 - GAUCUCGGGGCGCAGCGGCA 20 1103
BCLllA-619 - AUCUCGGGGCGCAGCGGCAC 20 1104
BCLllA-620 - GGGCGCAGCGGCACGGGAAG 20 1105
BCLllA-621 - CGCAGCGGCACGGGAAGUGG 20 1106
BCLllA-622 - GCAGCGGCACGGGAAGUGGA 20 1107
BCLllA-623 - GGGAGCACGCCCCAUAUUAG 20 1108
BCLllA-624 - CACGCCCCAUAUUAGUGGUC 20 1109
BCLllA-625 - ACGCCCCAUAUUAGUGGUCC 20 1110
BCLllA-626 - CCAUAUUAGUGGUCCGGGCC 20 1111
BCLllA-627 - CAUAUUAGUGGUCCGGGCCC 20 1112
BCLllA-628 - UUAGUGGUCCGGGCCCGGGC 20 1113
BCLllA-629 - GGGCAGGCCCAGCUCAAAAG 20 1114
BCLllA-630 - GGCAGGCCCAGCUCAAAAGA 20 1115
BCLllA-631 + GCGUCUGCCCUCUUUUGAGC 20 1116
BCLllA-632 + CGUCUGCCCUCUUUUGAGCU 20 1117
BCLllA-633 + UCUUUUGAGCUGGGCCUGCC 20 1118
BCLllA-634 + CUUUUGAGCUGGGCCUGCCC 20 1119
BCLllA-635 + GAGCUGGGCCUGCCCGGGCC 20 1120
BCLllA-636 + CCGGGCCCGGACCACUAAUA 20 1121
BCLllA-637 + CGGGCCCGGACCACUAAUAU 20 1122
BCLllA-638 + GGGCCCGGACCACUAAUAUG 20 1123
BCLllA-639 + GAUCCCUCCGUCCAGCUCCC 20 1124
BCLllA-640 + AUCCCUCCGUCCAGCUCCCC 20 1125 BCLllA-641 + CCUCCGUCCAGCUCCCCGGG 20 1126
BCLllA-642 + GUCCAGCUCCCCGGGCGGUG 20 1127
BCLllA-643 + GCGCAAACUCCCGU UCUCCG 20 1128
BCLllA-644 + CUCCGAGGAGUGCUCCGACG 20 1129
BCLllA-645 + CGAGGAGUGCUCCGACGAGG 20 1130
BCLllA-646 + UGCUCCGACGAGGAGGCAAA 20 1131
BCLllA-647 + GGAGGCAAAAGGCGAUUGUC 20 1132
BCLllA-648 + GUCUGGAGUCUCCGAAGCUA 20 1133
BCLllA-649 + GGAGUCUCCGAAGCUAAGGA 20 1134
BCLllA-650 + GAGUCUCCGAAGCUAAGGAA 20 1135
BCLllA-651 + GAAGGGAUCUUUGAGCUGCC 20 1136
BCLllA-652 + GGGAUCUUUGAGCUGCCUGG 20 1137
BCLllA-653 + CUGCCUGGAGGCCGCGUAGC 20 1138
BCLllA-654 + CGAGUACACGUUCUCCGUGU 20 1139
BCLllA-655 + GAGUACACGUUCUCCGUGUU 20 1140
BCLllA-656 + GUUCUCCGUGUUGGGCAUCG 20 1141
BCLllA-657 + UCCGUGUUGGGCAUCGCGGC 20 1142
BCLllA-658 + CCGUGUUGGGCAUCGCGGCC 20 1143
BCLllA-659 + CGUGUUGGGCAUCGCGGCCG 20 1144
BCLllA-660 + GUGUUGGGCAUCGCGGCCGG 20 1145
BCLllA-661 + UGGGCAUCGCGGCCGGGGGC 20 1146
BCLllA-662 + GAGCU UGAUGCGCUUAGAGA 20 1147
BCLllA-663 + AGCU UGAUGCGCUUAGAGAA 20 1148
BCLllA-664 + GCUUGAUGCGCUUAGAGAAG 20 1149
BCLllA-665 + AGAGAAGGGGCUCAGCGAGC 20 1150
BCLllA-666 + GAGAAGGGGCUCAGCGAGCU 20 1151
BCLllA-667 + AGAAGGGGCUCAGCGAGCUG 20 1152
BCLllA-668 + GCUGCCCAGCAGCAGCU UUU 20 1153
BCLllA-669 + CCAGCAGCAGCUUUUUGGAC 20 1154
BCLllA-670 + CUUUUUGGACAGGCCCCCCG 20 1155
BCLllA-671 + CCCCCCGAGGCCGACUCGCC 20 1156
BCLllA-672 + CCCCCGAGGCCGACUCGCCC 20 1157
BCLllA-673 + CCCCGAGGCCGACUCGCCCG 20 1158
BCLllA-674 + ACUCGCCCGGGGAGCAGCCG 20 1159
BCLllA-675 + UAACAGUGCCAUCGUCUAUG 20 1160
BCLllA-676 + GUCUAUGCGGUCCGACUCGC 20 1161
BCLllA-677 + CUUCGUCGCAAGUGUCCCUG 20 1162
BCLllA-678 + GCAAGUGUCCCUGUGGCCCU 20 1163
BCLllA-679 + GUCCCUGUGGCCCUCGGCCU 20 1164
BCLllA-680 + UGUGGCCCUCGGCCUCGGCC 20 1165
BCLllA-681 + GGCCCUCGGCCUCGGCCAGG 20 1166
BCLllA-682 + CGCGCUUAUGCUUCUCGCCC 20 1167 BCLllA-683 + UAUGCUUCUCGCCCAGGACC 20 1168
BCLllA-684 + GCUUCUCGCCCAGGACCUGG 20 1169
BCLllA-685 + CUCGCCCAGGACCUGGUGGA 20 1170
BCLllA-686 + GGCCUCGCUGAAGUGCUGCA 20 1171
BCLllA-687 + CACCAUGCCCUGCAUGACGU 20 1172
BCLllA-688 + ACCAUGCCCUGCAUGACGUC 20 1173
BCLllA-689 + UGCCCUGCAUGACGUCGGGC 20 1174
BCLllA-690 + GCCCUGCAUGACGUCGGGCA 20 1175
BCLllA-691 + GCAUGACGUCGGGCAGGGCG 20 1176
BCLllA-692 + CGCCCCGCGAGCUGUUCUCG 20 1177
BCLllA-693 + CCCGCGAGCUGUUCUCGUGG 20 1178
BCLllA-694 + CGUGGUGGCGCGCCGCCUCC 20 1179
BCLllA-695 - GGAGGAAGAGGAGGAGG 17 1180
BCLllA-696 - GGAGGAGGAGGAGCUGA 17 1181
BCLllA-697 - AGCUGACGGAGAGCGAG 17 1182
BCLllA-698 - GCUGACGGAGAGCGAGA 17 1183
BCLllA-699 - GACGGAGAGCGAGAGGG 17 1184
BCLllA-700 - AGCGAGAGGGUGGACUA 17 1185
BCLllA-701 - AGGGUGGACUACGGCUU 17 1186
BCLllA-702 - GGGUGGACUACGGCUUC 17 1187
BCLllA-703 - CGGCUUCGGGCUGAGCC 17 1188
BCLllA-704 - CUUCGGGCUGAGCCUGG 17 1189
BCLllA-705 - CGGGCUGAGCCUGGAGG 17 1190
BCLllA-706 - ACCACGAGAACAGCUCG 17 1191
BCLllA-707 - CCACGAGAACAGCUCGC 17 1192
BCLllA-708 - CACGAGAACAGCUCGCG 17 1193
BCLllA-709 - GAACAGCUCGCGGGGCG 17 1194
BCLllA-710 - CUCGCGGGGCGCGGUCG 17 1195
BCLllA-711 - UCGCGGGGCGCGGUCGU 17 1196
BCLllA-712 - GGGCGCGGUCGUGGGCG 17 1197
BCLllA-713 - GGCGCGGUCGUGGGCGU 17 1198
BCLllA-714 - CCUGCCCGACGUCAUGC 17 1199
BCLllA-715 - CUGCCCGACGUCAUGCA 17 1200
BCLllA-716 - CGACGUCAUGCAGGGCA 17 1201
BCLllA-717 - CAUGCAGCACUUCAGCG 17 1202
BCLllA-718 - CAGCGAGGCCUUCCACC 17 1203
BCLllA-719 - GGCCUUCCACCAGGUCC 17 1204
BCLllA-720 - GCCUUCCACCAGGUCCU 17 1205
BCLllA-721 - GGCGAGAAGCAUAAGCG 17 1206
BCLllA-722 - GCAUAAGCGCGGCCACC 17 1207
BCLllA-723 - GCGCGGCCACCUGGCCG 17 1208
BCLllA-724 - CCACCUGGCCGAGGCCG 17 1209 BCLllA-725 - CACCUGGCCGAGGCCGA 17 1210
BCLllA-726 - CCGAGGCCGAGGGCCAC 17 1211
BCLllA-727 - CGAGGCCGAGGGCCACA 17 1212
BCLllA-728 - CACUUGCGACGAAGACU 17 1213
BCLllA-729 - UUGCGACGAAGACUCGG 17 1214
BCLllA-730 - GACGAAGACUCGGUGGC 17 1215
BCLllA-731 - CUCGGUGGCCGGCGAGU 17 1216
BCLllA-732 - UCGGACCGCAUAGACGA 17 1217
BCLllA-733 - GACGAUGGCACUGUUAA 17 1218
BCLllA-734 - GGCACUGUUAAUGGCCG 17 1219
BCLllA-735 - UGGCCGCGGCUGCUCCC 17 1220
BCLllA-736 - GGCCGCGGCUGCUCCCC 17 1221
BCLllA-737 - CUGCUCCCCGGGCGAGU 17 1222
BCLllA-738 - CCCGGGCGAGUCGGCCU 17 1223
BCLllA-739 - CCGGGCGAGUCGGCCUC 17 1224
BCLllA-740 - CGGGCGAGUCGGCCUCG 17 1225
BCLllA-741 - GGGCGAGUCGGCCUCGG 17 1226
BCLllA-742 - GGCGAGUCGGCCUCGGG 17 1227
BCLllA-743 - GUCCAAAAAGCUGCUGC 17 1228
BCLllA-744 - UCCAAAAAGCUGCUGCU 17 1229
BCLllA-745 - GCGCAUCAAGCUCGAGA 17 1230
BCLllA-746 - GGAGUUCGACCUGCCCC 17 1231
BCLllA-747 - GGCCGCGAUGCCCAACA 17 1232
BCLllA-748 - AGAACGUGUACUCGCAG 17 1233
BCLllA-749 - UACUCGCAGUGGCUCGC 17 1234
BCLllA-750 - GUGGCUCGCCGGCUACG 17 1235
BCLllA-751 - CCGGCUACGCGGCCUCC 17 1236
BCLllA-752 - GAUCCCUUCCUUAGCUU 17 1237
BCLllA-753 - GCCUUUUGCCUCCUCGU 17 1238
BCLllA-754 - CUCGUCGGAGCACUCCU 17 1239
BCLllA-755 - GAGCACUCCUCGGAGAA 17 1240
BCLllA-756 - AGCACUCCUCGGAGAAC 17 1241
BCLllA-757 - CGCUUCUCCACACCGCC 17 1242
BCLllA-758 - GCUUCUCCACACCGCCC 17 1243
BCLllA-759 - CUUCUCCACACCGCCCG 17 1244
BCLllA-760 - CACACCGCCCGGGGAGC 17 1245
BCLllA-761 - CCGCCCGGGGAGCUGGA 17 1246
BCLllA-762 - CCCGGGGAGCUGGACGG 17 1247
BCLllA-763 - CCGGGGAGCUGGACGGA 17 1248
BCLllA-764 - GCUGGACGGAGGGAUCU 17 1249
BCLllA-765 - CUGGACGGAGGGAUCUC 17 1250
BCLllA-766 - UGGACGGAGGGAUCUCG 17 1251 BCLllA-767 - GGGAUCUCGGGGCGCAG 17 1252
BCLllA-768 - CUCGGGGCGCAGCGGCA 17 1253
BCLllA-769 - UCGGGGCGCAGCGGCAC 17 1254
BCLllA-770 - CGCAGCGGCACGGGAAG 17 1255
BCLllA-771 - AGCGGCACGGGAAGUGG 17 1256
BCLllA-772 - GCGGCACGGGAAGUGGA 17 1257
BCLllA-773 - AGCACGCCCCAUAUUAG 17 1258
BCLllA-774 - GCCCCAUAU UAGUGGUC 17 1259
BCLllA-775 - CCCCAUAU UAGUGGUCC 17 1260
BCLllA-776 - UAUUAGUGGUCCGGGCC 17 1261
BCLllA-777 - AU UAGUGGUCCGGGCCC 17 1262
BCLllA-778 - GUGGUCCGGGCCCGGGC 17 1263
BCLllA-779 - CAGGCCCAGCUCAAAAG 17 1264
BCLllA-780 - AGGCCCAGCUCAAAAGA 17 1265
BCLllA-781 + UCUGCCCUCU UUUGAGC 17 1266
BCLllA-782 + CUGCCCUCUU UUGAGCU 17 1267
BCLllA-783 + UUUGAGCUGGGCCUGCC 17 1268
BCLllA-784 + UUGAGCUGGGCCUGCCC 17 1269
BCLllA-785 + CUGGGCCUGCCCGGGCC 17 1270
BCLllA-786 + GGCCCGGACCACUAAUA 17 1271
BCLllA-787 + GCCCGGACCACUAAUAU 17 1272
BCLllA-788 + CCCGGACCACUAAUAUG 17 1273
BCLllA-789 + CCCUCCGUCCAGCUCCC 17 1274
BCLllA-790 + CCUCCGUCCAGCUCCCC 17 1275
BCLllA-791 + CCGUCCAGCUCCCCGGG 17 1276
BCLllA-792 + CAGCUCCCCGGGCGGUG 17 1277
BCLllA-793 + CAAACUCCCGUUCUCCG 17 1278
BCLllA-794 + CGAGGAGUGCUCCGACG 17 1279
BCLllA-795 + GGAGUGCUCCGACGAGG 17 1280
BCLllA-796 + UCCGACGAGGAGGCAAA 17 1281
BCLllA-797 + GGCAAAAGGCGAUUGUC 17 1282
BCLllA-798 + UGGAGUCUCCGAAGCUA 17 1283
BCLllA-799 + GUCUCCGAAGCUAAGGA 17 1284
BCLllA-800 + UCUCCGAAGCUAAGGAA 17 1285
BCLllA-801 + GGGAUCUUUGAGCUGCC 17 1286
BCLllA-802 + AUCUUUGAGCUGCCUGG 17 1287
BCLllA-803 + CCUGGAGGCCGCGUAGC 17 1288
BCLllA-804 + GUACACGUUCUCCGUGU 17 1289
BCLllA-805 + UACACGUUCUCCGUGUU 17 1290
BCLllA-806 + CUCCGUGUUGGGCAUCG 17 1291
BCLllA-807 + GUGUUGGGCAUCGCGGC 17 1292
BCLllA-808 + UGUUGGGCAUCGCGGCC 17 1293 BCLllA-809 + GUUGGGCAUCGCGGCCG 17 1294
BCLllA-810 + U UGGGCAUCGCGGCCGG 17 1295
BCLllA-811 + GCAUCGCGGCCGGGGGC 17 1296
BCLllA-812 + CUUGAUGCGCUUAGAGA 17 1297
BCLllA-813 + UUGAUGCGCUUAGAGAA 17 1298
BCLllA-814 + UGAUGCGCUUAGAGAAG 17 1299
BCLllA-815 + GAAGGGGCUCAGCGAGC 17 1300
BCLllA-816 + AAGGGGCUCAGCGAGCU 17 1301
BCLllA-817 + AGGGGCUCAGCGAGCUG 17 1302
BCLllA-818 + GCCCAGCAGCAGCUUU U 17 1303
BCLllA-819 + GCAGCAGCU UUUUGGAC 17 1304
BCLllA-820 + UUUGGACAGGCCCCCCG 17 1305
BCLllA-821 + CCCGAGGCCGACUCGCC 17 1306
BCLllA-822 + CCGAGGCCGACUCGCCC 17 1307
BCLllA-823 + CGAGGCCGACUCGCCCG 17 1308
BCLllA-824 + CGCCCGGGGAGCAGCCG 17 1309
BCLllA-825 + CAGUGCCAUCGUCUAUG 17 1310
BCLllA-826 + UAUGCGGUCCGACUCGC 17 1311
BCLllA-827 + CGUCGCAAGUGUCCCUG 17 1312
BCLllA-828 + AGUGUCCCUGUGGCCCU 17 1313
BCLllA-829 + CCUGUGGCCCUCGGCCU 17 1314
BCLllA-830 + GGCCCUCGGCCUCGGCC 17 1315
BCLllA-831 + CCUCGGCCUCGGCCAGG 17 1316
BCLllA-832 + GCUUAUGCU UCUCGCCC 17 1317
BCLllA-833 + GCUUCUCGCCCAGGACC 17 1318
BCLllA-834 + UCUCGCCCAGGACCUGG 17 1319
BCLllA-835 + GCCCAGGACCUGGUGGA 17 1320
BCLllA-836 + CUCGCUGAAGUGCUGCA 17 1321
BCLllA-837 + CAUGCCCUGCAUGACGU 17 1322
BCLllA-838 + AUGCCCUGCAUGACGUC 17 1323
BCLllA-839 + CCUGCAUGACGUCGGGC 17 1324
BCLllA-840 + CUGCAUGACGUCGGGCA 17 1325
BCLllA-841 + UGACGUCGGGCAGGGCG 17 1326
BCLllA-842 + CCCGCGAGCUGUUCUCG 17 1327
BCLllA-843 + GCGAGCUGUUCUCGUGG 17 1328
BCLllA-844 + GGUGGCGCGCCGCCUCC 17 1329
BCLllA-845 - CCCAGAGAGCUCAAGAUGUG 20 1330
BCLllA-846 - UCAAGAUGUGUGGCAGUUUU 20 1331
BCLllA-847 - GAUGUGUGGCAGUU UUCGGA 20 1332
BCLllA-848 + GCCACACAUCUUGAGCUCUC 20 1333
BCLllA-849 + CCACACAUCU UGAGCUCUCU 20 1334
BCLllA-850 + UCUCUGGGUACUACGCCGAA 20 1335 BCLllA-851 + CUCUGGGUACUACGCCGAAU 20 1336
BCLllA-852 + UCUGGGUACUACGCCGAAUG 20 1337
BCLllA-853 + CUGGGUACUACGCCGAAUGG 20 1338
BCLllA-854 - CUUCACACACCCCCAUU 17 1339
BCLllA-855 - AGAGAGCUCAAGAUGUG 17 1340
BCLllA-856 - AGAUGUGUGGCAGUUU U 17 1341
BCLllA-857 - GUGUGGCAGUUU UCGGA 17 1342
BCLllA-858 + ACACAUCUUGAGCUCUC 17 1343
BCLllA-859 + CACAUCUUGAGCUCUCU 17 1344
BCLllA-860 + CUGGGUACUACGCCGAA 17 1345
BCLllA-861 + UGGGUACUACGCCGAAU 17 1346
BCLllA-862 + GGGUACUACGCCGAAUG 17 1347
BCLllA-863 + GGUACUACGCCGAAUGG 17 1348
Table 2E provides exemplary targeting domains for knocking out the BCL11A gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. aureus Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position.
Table 2E
Figure imgf000150_0001
BCLllA-875 + UCCCGUUUGCUUAAGUG 17 1360
BCLllA-876 - UGAAGCCAUUCUUACAGAUG 20 1361
BCLllA-877 - AUGAACCAGACCACGGCCCG 20 1362
BCLllA-878 - UGAACCAGACCACGGCCCGU 20 1363
BCLllA-879 - G AACCAG ACCACGG CCCG U U 20 1364
BCLllA-880 - CCACGGCCCGUUGGGAGCUC 20 1365
BCLllA-881 - CGGCCCGUUGGGAGCUCCAG 20 1366
BCLllA-882 - GGCCCGUUGGGAGCUCCAGA 20 1367
BCLllA-883 - GCCCGUUGGGAGCUCCAGAA 20 1368
BCLllA-884 - GGAUCAUGACCUCCUCACCU 20 1369
BCLllA-885 - UCACCUGUGGGCAGUGCCAG 20 1370
BCLllA-886 - AGUGCCAGAUGAACUUCCCA 20 1371
BCLllA-887 - GUGCCAGAUGAACUUCCCAU 20 1372
BCLllA-888 - UGCCAGAUGAACUUCCCAUU 20 1373
BCLllA-889 - GCCAGAUGAACUUCCCAUUG 20 1374
BCLllA-890 - GGGGGACAUUCUUAUUUUUA 20 1375
BCLllA-891 - CUUAUUUUUAUCGAGCACAA 20 1376
BCLllA-892 - UUAUUUUUAUCGAGCACAAA 20 1377
BCLllA-893 - AUGCAAUGGCAGCCUCUGCU 20 1378
BCLllA-894 - GCCUCUGCUUAGAAAAAGCU 20 1379
BCLllA-895 - GCCACCUUCCCCUUCACCAA 20 1380
BCLllA-896 - CUUCCCCUUCACCAAUCGAG 20 1381
BCLllA-897 - UGAAAAAAGCAUCCAAUCCC 20 1382
BCLllA-898 - G A A A A A AG C A U C C A A U C C CG 20 1383
BCLllA-899 - GGUUGGCAUCCAGGUCACGC 20 1384
BCLllA-900 - UUGGCAUCCAGGUCACGCCA 20 1385
BCLllA-901 - GAUUGUUUAUCAACGUCAUC 20 1386
BCLllA-902 - UUGUUUAUCAACGUCAUCUA 20 1387
BCLllA-903 - UGUUUAUCAACGUCAUCUAG 20 1388
BCLllA-904 - CUAGAGGAAUUUGCCCCAAA 20 1389
BCLllA-905 - UAGAGGAAUUUGCCCCAAAC 20 1390
BCLllA-906 - AGCCAUUCUUACAGAUG 17 1391
BCLllA-907 - AACCAGACCACGGCCCG 17 1392
BCLllA-908 - ACCAGACCACGGCCCGU 17 1393
BCLllA-909 - CCAGACCACGGCCCGUU 17 1394
BCLllA-910 - CGGCCCGUUGGGAGCUC 17 1395
BCLllA-911 - CCCGUUGGGAGCUCCAG 17 1396
BCLllA-912 - CCGUUGGGAGCUCCAGA 17 1397
BCLllA-913 - CGUUGGGAGCUCCAGAA 17 1398
BCLllA-914 - UCAUGACCUCCUCACCU 17 1399
BCLllA-915 - CCUGUGGGCAGUGCCAG 17 1400
BCLllA-916 - GCCAGAUGAACUUCCCA 17 1401 BCLllA-917 - CCAGAUGAACUUCCCAU 17 1402
BCLllA-918 - CAGAUGAACUUCCCAUU 17 1403
BCLllA-919 - AGAUGAACUUCCCAU UG 17 1404
BCLllA-920 - GGACAUUCUUAUUUUUA 17 1405
BCLllA-921 - AU U U U U AU CG AGCACAA 17 1406
BCLllA-922 - UU UUUAUCGAGCACAAA 17 1407
BCLllA-923 - CAAUGGCAGCCUCUGCU 17 1408
BCLllA-924 - UCUGCU UAGAAAAAGCU 17 1409
BCLllA-925 - ACCUUCCCCUUCACCAA 17 1410
BCLllA-926 - CCCCUUCACCAAUCGAG 17 1411
BCLllA-927 - AAAAAGCAUCCAAUCCC 17 1412
BCLllA-928 - AAAAGCAUCCAAUCCCG 17 1413
BCLllA-929 - UGGCAUCCAGGUCACGC 17 1414
BCLllA-930 - GCAUCCAGGUCACGCCA 17 1415
BCLllA-931 - UGU UUAUCAACGUCAUC 17 1416
BCLllA-932 - UU UAUCAACGUCAUCUA 17 1417
BCLllA-933 - UUAUCAACGUCAUCUAG 17 1418
BCLllA-934 - GAGGAAUUUGCCCCAAA 17 1419
BCLllA-935 - AGGAAUUUGCCCCAAAC 17 1420
BCLllA-936 + UCAUCUGUAAGAAUGGCUUC 20 1421
BCLllA-937 + UGGUCUGGU UCAUCAUCUGU 20 1422
BCLllA-938 + AUCCCCUUCUGGAGCUCCCA 20 1423
BCLllA-939 + AGGAGGUCAUGAUCCCCUUC 20 1424
BCLllA-940 + GAGGAGGUCAUGAUCCCCUU 20 1425
BCLllA-941 + UCUGGCACUGCCCACAGGUG 20 1426
BCLllA-942 + AUCUGGCACUGCCCACAGGU 20 1427
BCLllA-943 + UCAUCUGGCACUGCCCACAG 20 1428
BCLllA-944 + AAAUAAGAAUGUCCCCCAAU 20 1429
BCLllA-945 + AAAAUAAGAAUGUCCCCCAA 20 1430
BCLllA-946 + AAAAAUAAGAAUGUCCCCCA 20 1431
BCLllA-947 + CGUUUGUGCUCGAUAAAAAU 20 1432
BCLllA-948 + UAUCCACAGCUUUUUCUAAG 20 1433
BCLllA-949 + UUUCAUCUCGAUUGGUGAAG 20 1434
BCLllA-950 + UUUUCAUCUCGAUUGGUGAA 20 1435
BCLllA-951 + U UUUUCAUCUCGAUUGGUGA 20 1436
BCLllA-952 + UUUUUUCAUCUCGAUUGGUG 20 1437
BCLllA-953 + UGCUUUUU UCAUCUCGAUUG 20 1438
BCLllA-954 + GGAUGCCAACCUCCACGGGA 20 1439
BCLllA-955 + GACCUGGAUGCCAACCUCCA 20 1440
BCLllA-956 + UGACCUGGAUGCCAACCUCC 20 1441
BCLllA-957 + UCGUCAUCCUCUGGCGUGAC 20 1442
BCLllA-958 + CUGCUAUGUGUUCCUGUUUG 20 1443 BCLllA-959 + CUGCUAUGUGUUCCUGUUUG 20 1444
BCLllA-960 + UCUGUAAGAAUGGCUUC 17 1445
BCLllA-961 + UCUGGUUCAUCAUCUGU 17 1446
BCLllA-962 + CCCUUCUGGAGCUCCCA 17 1447
BCLllA-963 + AGGUCAUGAUCCCCUUC 17 1448
BCLllA-964 + GAGGUCAUGAUCCCCUU 17 1449
BCLllA-965 + GGCACUGCCCACAGGUG 17 1450
BCLllA-966 + UGGCACUGCCCACAGGU 17 1451
BCLllA-967 + UCUGGCACUGCCCACAG 17 1452
BCLllA-968 + UAAGAAUGUCCCCCAAU 17 1453
BCLllA-969 + AUAAGAAUGUCCCCCAA 17 1454
BCLllA-970 + AAUAAGAAUGUCCCCCA 17 1455
BCLllA-971 + UUGUGCUCGAUAAAAAU 17 1456
BCLllA-972 + CCACAGCUU UUUCUAAG 17 1457
BCLllA-973 + CAUCUCGAUUGGUGAAG 17 1458
BCLllA-974 + UCAUCUCGAU UGGUGAA 17 1459
BCLllA-975 + U UCAUCUCGAUUGGUGA 17 1460
BCLllA-976 + UUUCAUCUCGAUUGGUG 17 1461
BCLllA-977 + U UUUUUCAUCUCGAUUG 17 1462
BCLllA-978 + UGCCAACCUCCACGGGA 17 1463
BCLllA-979 + CUGGAUGCCAACCUCCA 17 1464
BCLllA-980 + CCUGGAUGCCAACCUCC 17 1465
BCLllA-981 + UCAUCCUCUGGCGUGAC 17 1466
BCLllA-982 + UGCUAUGUGUUCCUGUU 17 1467
BCLllA-983 + CUGCUAUGUGUUCCUGU 17 1468
BCLllA-984 - CUCCUCCCCUCGU UCUGCAC 20 1469
BCLllA-985 - UCCUCCCCUCGUUCUGCACA 20 1470
BCLllA-986 - UGGAGCUCUAAUCCCCACGC 20 1471
BCLllA-987 - GGAGCUCUAAUCCCCACGCC 20 1472
BCLllA-988 - CUCUAAUCCCCACGCCUGGG 20 1473
BCLllA-989 - CCCCACGCCUGGGAUGAGUG 20 1474
BCLllA-990 - UGAGUGCAGAAUAUGCCCCG 20 1475
BCLllA-991 - CUCCCCUCGUUCUGCAC 17 1476
BCLllA-992 - UCCCCUCGUUCUGCACA 17 1477
BCLllA-993 - AGCUCUAAUCCCCACGC 17 1478
BCLllA-994 - GCUCUAAUCCCCACGCC 17 1479
BCLllA-995 - UAAUCCCCACGCCUGGG 17 1480
BCLllA-996 - CACGCCUGGGAUGAGUG 17 1481
BCLllA-997 - GUGCAGAAUAUGCCCCG 17 1482
BCLllA-998 + GAGGAGAGGCCCCUCCAGUG 20 1483
BCLllA-999 + CAUGUGCAGAACGAGGGGAG 20 1484
BCLllA-1000 + UCCAUGUGCAGAACGAGGGG 20 1485 BCLllA-1001 + CUCCAUGUGCAGAACGAGGG 20 1486
BCLllA-1002 + AGCUCCAUGUGCAGAACGAG 20 1487
BCLllA-1003 + GAGCUCCAUGUGCAGAACGA 20 1488
BCLllA-1004 + AGAGCUCCAUGUGCAGAACG 20 1489
BCLllA-1005 + UAGAGCUCCAUGUGCAGAAC 20 1490
BCLllA-1006 + AUUAGAGCUCCAUGUGCAGA 20 1491
BCLllA-1007 + GGGGAUUAGAGCUCCAUGUG 20 1492
BCLllA-1008 + CUCAUCCCAGGCGUGGGGAU 20 1493
BCLllA-1009 + UCUGCACUCAUCCCAGGCGU 20 1494
BCLllA-1010 + U UCUGCACUCAUCCCAGGCG 20 1495
BCLllA-1011 + AUUCUGCACUCAUCCCAGGC 20 1496
BCLllA-1012 + GAGAGGCCCCUCCAGUG 17 1497
BCLllA-1013 + GUGCAGAACGAGGGGAG 17 1498
BCLllA-1014 + AUGUGCAGAACGAGGGG 17 1499
BCLllA-1015 + CAUGUGCAGAACGAGGG 17 1500
BCLllA-1016 + UCCAUGUGCAGAACGAG 17 1501
BCLllA-1017 + CUCCAUGUGCAGAACGA 17 1502
BCLllA-1018 + GCUCCAUGUGCAGAACG 17 1503
BCLllA-1019 + AGCUCCAUGUGCAGAAC 17 1504
BCLllA-1020 + AGAGCUCCAUGUGCAGA 17 1505
BCLllA-1021 + GAUUAGAGCUCCAUGUG 17 1506
BCLllA-1022 + AUCCCAGGCGUGGGGAU 17 1507
BCLllA-1023 + GCACUCAUCCCAGGCGU 17 1508
BCLllA-1024 + UGCACUCAUCCCAGGCG 17 1509
BCLllA-1025 + CUGCACUCAUCCCAGGC 17 1510
BCLllA-1026 - GGUUUCUCUUGCAACACGCA 20 1511
BCLllA-1027 - GCAACACGCACAGAACACUC 20 1512
BCLllA-1028 - GCACAGAACACUCAUGGAUU 20 1513
BCLllA-1029 - UCAUGGAUUAAGAAUCUACU 20 1514
BCLllA-1030 - AU U AAG AAU CU ACU U AG AAA 20 1515
BCLllA-1031 - AAUCUACUUAGAAAGCGAAC 20 1516
BCLllA-1032 - AUCUACUUAGAAAGCGAACA 20 1517
BCLllA-1033 - CACGGAAGUCCCCUGACCCC 20 1518
BCLllA-1034 - CCCGCGGGUUGGUAUCCCUU 20 1519
BCLllA-1035 - UAUCCCUUCAGGACUAGGUG 20 1520
BCLllA-1036 - UCCUUCCCAGCCACCUCUCC 20 1521
BCLllA-1037 - CCUUCCCAGCCACCUCUCCA 20 1522
BCLllA-1038 - AAUAACCCCUUUAACCUGCU 20 1523
BCLllA-1039 - CUUUAACCUGCUAAGAAUAC 20 1524
BCLllA-1040 - UAAGAAUACCAGGAUCAGUA 20 1525
BCLllA-1041 - AGAAUACCAGGAUCAGUAUC 20 1526
BCLllA-1042 - AAUACCAGGAUCAGUAUCGA 20 1527 BCLllA-1043 - GAGAGAGGCUUCCGGCCUGG 20 1528
BCLllA-1044 - AGAGGCUUCCGGCCUGGCAG 20 1529
BCLllA-1045 - CCCCCCUGUUUAGUCCACCA 20 1530
BCLllA-1046 - GUCCACCACCGAGACAUCAC 20 1531
BCLllA-1047 - UCACUUGGACCCCCACCGCA 20 1532
BCLllA-1048 - ACCCCCACCGCAUAGAGCGC 20 1533
BCLllA-1049 - CCCCCACCGCAUAGAGCGCC 20 1534
BCLllA-1050 - CCCCACCGCAUAGAGCGCCU 20 1535
BCLllA-1051 - ACCGCAUAGAGCGCCUGGGG 20 1536
BCLllA-1052 - CCGCAUAGAGCGCCUGGGGG 20 1537
BCLllA-1053 - CAUAGAGCGCCUGGGGGCGG 20 1538
BCLllA-1054 - UGGCCCUGGCCACCCAUCAC 20 1539
BCLllA-1055 - CAUCACCCGAGUGCCUUUGA 20 1540
BCLllA-1056 - CCUUUGACAGGGUGCUGCGG 20 1541
BCLllA-1057 - UGCGGUUGAAUCCAAUGGCU 20 1542
BCLllA-1058 - GCGGUUGAAUCCAAUGGCUA 20 1543
BCLllA-1059 - UGGCUAUGGAGCCUCCCGCC 20 1544
BCLllA-1060 - CCUCCCGCCAUGGAUUUCUC 20 1545
BCLllA-1061 - CUCCCGCCAUGGAUUUCUCU 20 1546
BCLllA-1062 - AUGGAUUUCUCUAGGAGACU 20 1547
BCLllA-1063 - GGAUUUCUCUAGGAGACUUA 20 1548
BCLllA-1064 - UAGGAGACUUAGAGAGCUGG 20 1549
BCLllA-1065 - AGGAGACUUAGAGAGCUGGC 20 1550
BCLllA-1066 - GGAGACUUAGAGAGCUGGCA 20 1551
BCLllA-1067 - CCCGGUCAAGUCCAAGUCAU 20 1552
BCLllA-1068 - GCGGCAAGACGUUCAAAUUU 20 1553
BCLllA-1069 - UGGUGCACCGGCGCAGCCAC 20 1554
BCLllA-1070 - GCACCGGCGCAGCCACACGG 20 1555
BCLllA-1071 - ACCGGCGCAGCCACACGGGC 20 1556
BCLllA-1072 - CGUGCACCCAGGCCAGCAAG 20 1557
BCLllA-1073 - CCAGCAAGCUGAAGCGCCAC 20 1558
BCLllA-1074 - GUCUCUCCACCGCCAGCUCC 20 1559
BCLllA-1075 - UCUCUCCACCGCCAGCUCCC 20 1560
BCLllA-1076 - AACCCGGCACCAGCGACUUG 20 1561
BCLllA-1077 - AGUCCGUGGUGGCCAAGUUC 20 1562
BCLllA-1078 - CGUGGUGGCCAAGUUCAAGA 20 1563
BCLllA-1079 - UGGUGGCCAAGUUCAAGAGC 20 1564
BCLllA-1080 - AGAACGACCCCAACCUGAUC 20 1565
BCLllA-1081 - GAACGACCCCAACCUGAUCC 20 1566
BCLllA-1082 - ACGACCCCAACCUGAUCCCG 20 1567
BCLllA-1083 - CCCCAACCUGAUCCCGGAGA 20 1568
BCLllA-1084 - CCCAACCUGAUCCCGGAGAA 20 1569 BCLllA-1085 - CCAACCUGAUCCCGGAGAAC 20 1570
BCLllA-1086 - CCUGAUCCCGGAGAACGGGG 20 1571
BCLllA-1087 - UGAUCCCGGAGAACGGGGAC 20 1572
BCLllA-1088 - GAUCCCGGAGAACGGGGACG 20 1573
BCLllA-1089 - UCCCGGAGAACGGGGACGAG 20 1574
BCLllA-1090 - CCCGGAGAACGGGGACGAGG 20 1575
BCLllA-1091 - GGAGAACGGGGACGAGGAGG 20 1576
BCLllA-1092 - AGAACGGGGACGAGGAGGAA 20 1577
BCLllA-1093 - GAACGGGGACGAGGAGGAAG 20 1578
BCLllA-1094 - ACGGGGACGAGGAGGAAGAG 20 1579
BCLllA-1095 - CGAGGAGGAAGAGGAGGACG 20 1580
BCLllA-1096 - AGGAGGAAGAGGAGGACGAC 20 1581
BCLllA-1097 - GGAGGAAGAGGAGGACGACG 20 1582
BCLllA-1098 - GGAAGAGGAGGACGACGAGG 20 1583
BCLllA-1099 - AAGAGGAGGACGACGAGGAA 20 1584
BCLllA-1100 - AGAGGAGGACGACGAGGAAG 20 1585
BCLllA-1101 - GGAGGACGACGAGGAAGAGG 20 1586
BCLllA-1102 - GGACGACGAGGAAGAGGAAG 20 1587
BCLllA-1103 - ACGACGAGGAAGAGGAAGAA 20 1588
BCLllA-1104 - CGACGAGGAAGAGGAAGAAG 20 1589
BCLllA-1105 - ACGAGGAAGAGGAAGAAGAG 20 1590
BCLllA-1106 - CGAGGAAGAGGAAGAAGAGG 20 1591
BCLllA-1107 - GGAAGAGGAAGAAGAGGAGG 20 1592
BCLllA-1108 - AAGAGGAAGAAGAGGAGGAA 20 1593
BCLllA-1109 - AGAGGAAGAAGAGGAGGAAG 20 1594
BCLllA-1110 - AGGAAGAAGAGGAGGAAGAG 20 1595
BCLllA-1111 - GGAAGAAGAGGAGGAAGAGG 20 1596
BCLllA-1112 - AAGAAGAGGAGGAAGAGGAG 20 1597
BCLllA-1113 - AGAAGAGGAGGAAGAGGAGG 20 1598
BCLllA-1114 - AAGAGGAGGAAGAGGAGGAG 20 1599
BCLllA-1115 - AGAGGAGGAAGAGGAGGAGG 20 1600
BCLllA-1116 - AAGAGGAGGAGGAGGAGCUG 20 1601
BCLllA-1117 - AGAGGAGGAGGAGGAGCUGA 20 1602
BCLllA-1118 - AGGAGGAGGAGGAGCUGACG 20 1603
BCLllA-1119 - GGAGGAGGAGCUGACGGAGA 20 1604
BCLllA-1120 - AGGAGGAGCUGACGGAGAGC 20 1605
BCLllA-1121 - GAGGAGCUGACGGAGAGCGA 20 1606
BCLllA-1122 - AGCUGACGGAGAGCGAGAGG 20 1607
BCLllA-1123 - CGAGAGGGUGGACUACGGCU 20 1608
BCLllA-1124 - GGGUGGACUACGGCUUCGGG 20 1609
BCLllA-1125 - ACUACGGCUUCGGGCUGAGC 20 1610
BCLllA-1126 - CUACGGCUUCGGGCUGAGCC 20 1611 BCLllA-1127 - CCUGGAGGCGGCGCGCCACC 20 1612
BCLllA-1128 - UGGAGGCGGCGCGCCACCAC 20 1613
BCLllA-1129 - CGCCACCACGAGAACAGCUC 20 1614
BCLllA-1130 - GCCACCACGAGAACAGCUCG 20 1615
BCLllA-1131 - ACAGCUCGCGGGGCGCGGUC 20 1616
BCLllA-1132 - CGCGGGGCGCGGUCGUGGGC 20 1617
BCLllA-1133 - CGCGGUCGUGGGCGUGGGCG 20 1618
BCLllA-1134 - CGGUCGUGGGCGUGGGCGAC 20 1619
BCLllA-1135 - GCGCCCUGCCCGACGUCAUG 20 1620
BCLllA-1136 - CAGCUCCAUGCAGCACUUCA 20 1621
BCLllA-1137 - GCGAGGCCUUCCACCAGGUC 20 1622
BCLllA-1138 - GGCCUUCCACCAGGUCCUGG 20 1623
BCLllA-1139 - CCUUCCACCAGGUCCUGGGC 20 1624
BCLllA-1140 - GCAUAAGCGCGGCCACCUGG 20 1625
BCLllA-1141 - GCGCGGCCACCUGGCCGAGG 20 1626
BCLllA-1142 - GCGGCCACCUGGCCGAGGCC 20 1627
BCLllA-1143 - CUGGCCGAGGCCGAGGGCCA 20 1628
BCLllA-1144 - UGGCCGAGGCCGAGGGCCAC 20 1629
BCLllA-1145 - GGGCCACAGGGACACUUGCG 20 1630
BCLllA-1146 - CGACGAAGACUCGGUGGCCG 20 1631
BCLllA-1147 - AAGACUCGGUGGCCGGCGAG 20 1632
BCLllA-1148 - UUAAUGGCCGCGGCUGCUCC 20 1633
BCLllA-1149 - UGGCCGCGGCUGCUCCCCGG 20 1634
BCLllA-1150 - GCUCCCCGGGCGAGUCGGCC 20 1635
BCLllA-1151 - CUCCCCGGGCGAGUCGGCCU 20 1636
BCLllA-1152 - UCCCCGGGCGAGUCGGCCUC 20 1637
BCLllA-1153 - CCCCGGGCGAGUCGGCCUCG 20 1638
BCLllA-1154 - GCCUGUCCAAAAAGCUGCUG 20 1639
BCLllA-1155 - UGCUGGGCAGCCCCAGCUCG 20 1640
BCLllA-1156 - CUUCUCUAAGCGCAUCAAGC 20 1641
BCLllA-1157 - UCUCUAAGCGCAUCAAGCUC 20 1642
BCLllA-1158 - CUAAGCGCAUCAAGCUCGAG 20 1643
BCLllA-1159 - UAAGCGCAUCAAGCUCGAGA 20 1644
BCLllA-1160 - CCCCGGCCGCGAUGCCCAAC 20 1645
BCLllA-1161 - CCCGGCCGCGAUGCCCAACA 20 1646
BCLllA-1162 - CGGCCGCGAUGCCCAACACG 20 1647
BCLllA-1163 - CAAAGAUCCCUUCCUUAGCU 20 1648
BCLllA-1164 - AAAGAUCCCUUCCUUAGCUU 20 1649
BCLllA-1165 - AAUCGCCUUUUGCCUCCUCG 20 1650
BCLllA-1166 - AUCGCCUUUUGCCUCCUCGU 20 1651
BCLllA-1167 - CCUCCUCGUCGGAGCACUCC 20 1652
BCLllA-1168 - CUCCUCGUCGGAGCACUCCU 20 1653 BCLllA-1169 - CCUCGUCGGAGCACUCCUCG 20 1654
BCLllA-1170 - GUCGGAGCACUCCUCGGAGA 20 1655
BCLllA-1171 - UCGGAGCACUCCUCGGAGAA 20 1656
BCLllA-1172 - CGGAGCACUCCUCGGAGAAC 20 1657
BCLllA-1173 - UUUGCGCUUCUCCACACCGC 20 1658
BCLllA-1174 - UUGCGCUUCUCCACACCGCC 20 1659
BCLllA-1175 - UGCGCUUCUCCACACCGCCC 20 1660
BCLllA-1176 - GCGCUUCUCCACACCGCCCG 20 1661
BCLllA-1177 - UCUCCACACCGCCCGGGGAG 20 1662
BCLllA-1178 - CACACCGCCCGGGGAGCUGG 20 1663
BCLllA-1179 - ACACCGCCCGGGGAGCUGGA 20 1664
BCLllA-1180 - ACCGCCCGGGGAGCUGGACG 20 1665
BCLllA-1181 - CCGCCCGGGGAGCUGGACGG 20 1666
BCLllA-1182 - GGGAGCUGGACGGAGGGAUC 20 1667
BCLllA-1183 - GGAGCUGGACGGAGGGAUCU 20 1668
BCLllA-1184 - GGAUCUCGGGGCGCAGCGGC 20 1669
BCLllA-1185 - GAUCUCGGGGCGCAGCGGCA 20 1670
BCLllA-1186 - AUCUCGGGGCGCAGCGGCAC 20 1671
BCLllA-1187 - GGGGCGCAGCGGCACGGGAA 20 1672
BCLllA-1188 - GGGCGCAGCGGCACGGGAAG 20 1673
BCLllA-1189 - GCGCAGCGGCACGGGAAGUG 20 1674
BCLllA-1190 - CGCAGCGGCACGGGAAGUGG 20 1675
BCLllA-1191 - GCAGCGGCACGGGAAGUGGA 20 1676
BCLllA-1192 - GCACGCCCCAUAUUAGUGGU 20 1677
BCLllA-1193 - CCCAUAUUAGUGGUCCGGGC 20 1678
BCLllA-1194 - CCCGGGCAGGCCCAGCUCAA 20 1679
BCLllA-1195 - CGGGCAGGCCCAGCU C A A A A 20 1680
BCLllA-1196 - UUCUCUUGCAACACGCA 17 1681
BCLllA-1197 - ACACGCACAGAACACUC 17 1682
BCLllA-1198 - CAGAACACUCAUGGAUU 17 1683
BCLllA-1199 - UGGAUUAAGAAUCUACU 17 1684
BCLllA-1200 - AAGAAUCUACUUAGAAA 17 1685
BCLllA-1201 - CUACUUAGAAAGCGAAC 17 1686
BCLllA-1202 - UACUUAGAAAGCGAACA 17 1687
BCLllA-1203 - GGAAGUCCCCUGACCCC 17 1688
BCLllA-1204 - GCGGGUUGGUAUCCCUU 17 1689
BCLllA-1205 - CCCUUCAGGACUAGGUG 17 1690
BCLllA-1206 - UUCCCAGCCACCUCUCC 17 1691
BCLllA-1207 - UCCCAGCCACCUCUCCA 17 1692
BCLllA-1208 - AACCCCUUUAACCUGCU 17 1693
BCLllA-1209 - UAACCUGCUAAGAAUAC 17 1694
BCLllA-1210 - GAAUACCAGGAUCAGUA 17 1695 BCLllA-1211 - AUACCAGGAUCAGUAUC 17 1696
BCLllA-1212 - ACCAGGAUCAGUAUCGA 17 1697
BCLllA-1213 - AGAGGCUUCCGGCCUGG 17 1698
BCLllA-1214 - GGCUUCCGGCCUGGCAG 17 1699
BCLllA-1215 - CCCUGUUUAGUCCACCA 17 1700
BCLllA-1216 - CACCACCGAGACAUCAC 17 1701
BCLllA-1217 - CUUGGACCCCCACCGCA 17 1702
BCLllA-1218 - CCCACCGCAUAGAGCGC 17 1703
BCLllA-1219 - CCACCGCAUAGAGCGCC 17 1704
BCLllA-1220 - CACCGCAUAGAGCGCCU 17 1705
BCLllA-1221 - GCAUAGAGCGCCUGGGG 17 1706
BCLllA-1222 - CAUAGAGCGCCUGGGGG 17 1707
BCLllA-1223 - AGAGCGCCUGGGGGCGG 17 1708
BCLllA-1224 - CCCUGGCCACCCAUCAC 17 1709
BCLllA-1225 - CACCCGAGUGCCUUUGA 17 1710
BCLllA-1226 - UUGACAGGGUGCUGCGG 17 1711
BCLllA-1227 - GGUUGAAUCCAAUGGCU 17 1712
BCLllA-1228 - GUUGAAUCCAAUGGCUA 17 1713
BCLllA-1229 - CUAUGGAGCCUCCCGCC 17 1714
BCLllA-1230 - CCCGCCAUGGAUUUCUC 17 1715
BCLllA-1231 - CCGCCAUGGAUUUCUCU 17 1716
BCLllA-1232 - GAUUUCUCUAGGAGACU 17 1717
BCLllA-1233 - UUUCUCUAGGAGACUUA 17 1718
BCLllA-1234 - GAGACUUAGAGAGCUGG 17 1719
BCLllA-1235 - AGACUUAGAGAGCUGGC 17 1720
BCLllA-1236 - GACUUAGAGAGCUGGCA 17 1721
BCLllA-1237 - GGUCAAGUCCAAGUCAU 17 1722
BCLllA-1238 - GCAAGACG U U CAAAU U U 17 1723
BCLllA-1239 - UGCACCGGCGCAGCCAC 17 1724
BCLllA-1240 - CCGGCGCAGCCACACGG 17 1725
BCLllA-1241 - GGCGCAGCCACACGGGC 17 1726
BCLllA-1242 - GCACCCAGGCCAGCAAG 17 1727
BCLllA-1243 - GCAAGCUGAAGCGCCAC 17 1728
BCLllA-1244 - UCUCCACCGCCAGCUCC 17 1729
BCLllA-1245 - CUCCACCGCCAGCUCCC 17 1730
BCLllA-1246 - CCGGCACCAGCGACUUG 17 1731
BCLllA-1247 - CCGUGGUGGCCAAGUUC 17 1732
BCLllA-1248 - GGUGGCCAAGUUCAAGA 17 1733
BCLllA-1249 - UGGCCAAG U U CAAG AG C 17 1734
BCLllA-1250 - ACGACCCCAACCUGAUC 17 1735
BCLllA-1251 - CGACCCCAACCUGAUCC 17 1736
BCLllA-1252 - ACCCCAACCUGAUCCCG 17 1737 BCLllA-1253 - CAACCUGAUCCCGGAGA 17 1738
BCLllA-1254 - AACCUGAUCCCGGAGAA 17 1739
BCLllA-1255 - ACCUGAUCCCGGAGAAC 17 1740
BCLllA-1256 - GAUCCCGGAGAACGGGG 17 1741
BCLllA-1257 - UCCCGGAGAACGGGGAC 17 1742
BCLllA-1258 - CCCGGAGAACGGGGACG 17 1743
BCLllA-1259 - CGGAGAACGGGGACGAG 17 1744
BCLllA-1260 - GGAGAACGGGGACGAGG 17 1745
BCLllA-1261 - GAACGGGGACGAGGAGG 17 1746
BCLllA-1262 - ACGGGGACGAGGAGGAA 17 1747
BCLllA-1263 - CGGGGACGAGGAGGAAG 17 1748
BCLllA-1264 - GGGACGAGGAGGAAGAG 17 1749
BCLllA-1265 - GGAGGAAGAGGAGGACG 17 1750
BCLllA-1266 - AGGAAGAGGAGGACGAC 17 1751
BCLllA-1267 - GGAAGAGGAGGACGACG 17 1752
BCLllA-1268 - AGAGGAGGACGACGAGG 17 1753
BCLllA-1269 - AGGAGGACGACGAGGAA 17 1754
BCLllA-1270 - GGAGGACGACGAGGAAG 17 1755
BCLllA-1271 - GGACGACGAGGAAGAGG 17 1756
BCLllA-1272 - CGACGAGGAAGAGGAAG 17 1757
BCLllA-1273 - ACGAGGAAGAGGAAGAA 17 1758
BCLllA-1274 - CGAGGAAGAGGAAGAAG 17 1759
BCLllA-1275 - AGGAAGAGGAAGAAGAG 17 1760
BCLllA-1276 - GGAAGAGGAAGAAGAGG 17 1761
BCLllA-1277 - AGAGGAAGAAGAGGAGG 17 1762
BCLllA-1278 - AGGAAGAAGAGGAGGAA 17 1763
BCLllA-1279 - GGAAGAAGAGGAGGAAG 17 1764
BCLllA-1280 - AAGAAGAGGAGGAAGAG 17 1765
BCLllA-1281 - AGAAGAGGAGGAAGAGG 17 1766
BCLllA-1282 - AAGAGGAGGAAGAGGAG 17 1767
BCLllA-1283 - AGAGGAGGAAGAGGAGG 17 1768
BCLllA-1284 - AGGAGGAAGAGGAGGAG 17 1769
BCLllA-1285 - GGAGGAAGAGGAGGAGG 17 1770
BCLllA-1286 - AGGAGGAGGAGGAGCUG 17 1771
BCLllA-1287 - GGAGGAGGAGGAGCUGA 17 1772
BCLllA-1288 - AGGAGGAGGAGCUGACG 17 1773
BCLllA-1289 - GGAGGAGCUGACGGAGA 17 1774
BCLllA-1290 - AGGAGCUGACGGAGAGC 17 1775
BCLllA-1291 - GAGCUGACGGAGAGCGA 17 1776
BCLllA-1292 - UGACGGAGAGCGAGAGG 17 1777
BCLllA-1293 - GAGGGUGGACUACGGCU 17 1778
BCLllA-1294 - UGGACUACGGCUUCGGG 17 1779 BCLllA-1295 - ACGGCUUCGGGCUGAGC 17 1780
BCLllA-1296 - CGGCUUCGGGCUGAGCC 17 1781
BCLllA-1297 - GGAGGCGGCGCGCCACC 17 1782
BCLllA-1298 - AGGCGGCGCGCCACCAC 17 1783
BCLllA-1299 - CACCACG AG AACAG CU C 17 1784
BCLllA-1300 - ACCACGAGAACAGCUCG 17 1785
BCLllA-1301 - GCUCGCGGGGCGCGGUC 17 1786
BCLllA-1302 - GGGGCGCGGUCGUGGGC 17 1787
BCLllA-1303 - GGUCGUGGGCGUGGGCG 17 1788
BCLllA-1304 - UCGUGGGCGUGGGCGAC 17 1789
BCLllA-1305 - CCCUGCCCGACGUCAUG 17 1790
BCLllA-1306 - CUCCAUGCAGCACUUCA 17 1791
BCLllA-1307 - AGGCCUUCCACCAGGUC 17 1792
BCLllA-1308 - CUUCCACCAGGUCCUGG 17 1793
BCLllA-1309 - UCCACCAGGUCCUGGGC 17 1794
BCLllA-1310 - UAAGCGCGGCCACCUGG 17 1795
BCLllA-1311 - CGGCCACCUGGCCGAGG 17 1796
BCLllA-1312 - GCCACCUGGCCGAGGCC 17 1797
BCLllA-1313 - GCCGAGGCCGAGGGCCA 17 1798
BCLllA-1314 - CCGAGGCCGAGGGCCAC 17 1799
BCLllA-1315 - CCACAGGGACACUUGCG 17 1800
BCLllA-1316 - CGAAGACUCGGUGGCCG 17 1801
BCLllA-1317 - ACUCGGUGGCCGGCGAG 17 1802
BCLllA-1318 - AUGGCCGCGGCUGCUCC 17 1803
BCLllA-1319 - CCGCGGCUGCUCCCCGG 17 1804
BCLllA-1320 - CCCCGGGCGAGUCGGCC 17 1805
BCLllA-1321 - CCCGGGCGAGUCGGCCU 17 1806
BCLllA-1322 - CCGGGCGAGUCGGCCUC 17 1807
BCLllA-1323 - CGGGCGAGUCGGCCUCG 17 1808
BCLllA-1324 - UGUCCAAAAAGCUGCUG 17 1809
BCLllA-1325 - UGGGCAGCCCCAGCUCG 17 1810
BCLllA-1326 - CUCUAAGCGCAUCAAGC 17 1811
BCLllA-1327 - CUAAGCGCAUCAAGCUC 17 1812
BCLllA-1328 - AGCGCAUCAAGCUCGAG 17 1813
BCLllA-1329 - GCGCAUCAAGCUCGAGA 17 1814
BCLllA-1330 - CGGCCGCGAUGCCCAAC 17 1815
BCLllA-1331 - GGCCGCGAUGCCCAACA 17 1816
BCLllA-1332 - CCGCGAUGCCCAACACG 17 1817
BCLllA-1333 - AGAUCCCUUCCUUAGCU 17 1818
BCLllA-1334 - GAUCCCUUCCUUAGCUU 17 1819
BCLllA-1335 - CGCCUUUUGCCUCCUCG 17 1820
BCLllA-1336 - GCCUUUUGCCUCCUCGU 17 1821 BCLllA-1337 - CCUCGUCGGAGCACUCC 17 1822
BCLllA-1338 - CUCGUCGGAGCACUCCU 17 1823
BCLllA-1339 - CGUCGGAGCACUCCUCG 17 1824
BCLllA-1340 - GGAGCACUCCUCGGAGA 17 1825
BCLllA-1341 - GAGCACUCCUCGGAGAA 17 1826
BCLllA-1342 - AGCACUCCUCGGAGAAC 17 1827
BCLllA-1343 - GCGCUUCUCCACACCGC 17 1828
BCLllA-1344 - CGCUUCUCCACACCGCC 17 1829
BCLllA-1345 - GCUUCUCCACACCGCCC 17 1830
BCLllA-1346 - CUUCUCCACACCGCCCG 17 1831
BCLllA-1347 - CCACACCGCCCGGGGAG 17 1832
BCLllA-1348 - ACCGCCCGGGGAGCUGG 17 1833
BCLllA-1349 - CCGCCCGGGGAGCUGGA 17 1834
BCLllA-1350 - GCCCGGGGAGCUGGACG 17 1835
BCLllA-1351 - CCCGGGGAGCUGGACGG 17 1836
BCLllA-1352 - AGCUGGACGGAGGGAUC 17 1837
BCLllA-1353 - GCUGGACGGAGGGAUCU 17 1838
BCLllA-1354 - UCUCGGGGCGCAGCGGC 17 1839
BCLllA-1355 - CUCGGGGCGCAGCGGCA 17 1840
BCLllA-1356 - UCGGGGCGCAGCGGCAC 17 1841
BCLllA-1357 - GCGCAGCGGCACGGGAA 17 1842
BCLllA-1358 - CGCAGCGGCACGGGAAG 17 1843
BCLllA-1359 - CAGCGGCACGGGAAGUG 17 1844
BCLllA-1360 - AGCGGCACGGGAAGUGG 17 1845
BCLllA-1361 - GCGGCACGGGAAGUGGA 17 1846
BCLllA-1362 - CGCCCCAUAU UAGUGGU 17 1847
BCLllA-1363 - AUAUUAGUGGUCCGGGC 17 1848
BCLllA-1364 - GGGCAGGCCCAGCUCAA 17 1849
BCLllA-1365 - GCAGGCCCAGCU C A A A A 17 1850
BCLllA-1366 + AAGUUGUACAUGUGUAGCUG 20 1851
BCLllA-1367 + GCAAGAGAAACCAUGCACUG 20 1852
BCLllA-1368 + GUGUUCUGUGCGUGU UGCAA 20 1853
BCLllA-1369 + GAGUGUUCUGUGCGUGUUGC 20 1854
BCLllA-1370 + UCUAAGUAGAUUCUUAAUCC 20 1855
BCLllA-1371 + GAUACCAACCCGCGGGGUCA 20 1856
BCLllA-1372 + GGAUACCAACCCGCGGGGUC 20 1857
BCLllA-1373 + GGGAUACCAACCCGCGGGGU 20 1858
BCLllA-1374 + CCUGAAGGGAUACCAACCCG 20 1859
BCLllA-1375 + UCCUGAAGGGAUACCAACCC 20 1860
BCLllA-1376 + CAUUCUGCACCUAGUCCUGA 20 1861
BCLllA-1377 + ACAUUCUGCACCUAGUCCUG 20 1862
BCLllA-1378 + AGGACAUUCUGCACCUAGUC 20 1863 BCLllA-1379 + CCCAUGGAGAGGUGGCUGGG 20 1864
BCLllA-1380 + AAUCCCAUGGAGAGGUGGCU 20 1865
BCLllA-1381 + GAAUCCCAUGGAGAGGUGGC 20 1866
BCLllA-1382 + UGAAUCCCAUGGAGAGGUGG 20 1867
BCLllA-1383 + UCUGCAAUAUGAAUCCCAUG 20 1868
BCLllA-1384 + UGUCUGCAAUAUGAAUCCCA 20 1869
BCLllA-1385 + U UGUCUGCAAUAUGAAUCCC 20 1870
BCLllA-1386 + AAGGGGUUAUUGUCUGCAAU 20 1871
BCLllA-1387 + UGGUAUUCUUAGCAGGUUAA 20 1872
BCLllA-1388 + CUGGUAUUCUUAGCAGGUUA 20 1873
BCLllA-1389 + AAAGCGCCCUUCUGCCAGGC 20 1874
BCLllA-1390 + GAAAGCGCCCUUCUGCCAGG 20 1875
BCLllA-1391 + CUAAACAGGGGGGGAGUGGG 20 1876
BCLllA-1392 + ACUAAACAGGGGGGGAGUGG 20 1877
BCLllA-1393 + GUGGACUAAACAGGGGGGGA 20 1878
BCLllA-1394 + GGUGGUGGACUAAACAGGGG 20 1879
BCLllA-1395 + CGGUGGUGGACUAAACAGGG 20 1880
BCLllA-1396 + UCGGUGGUGGACUAAACAGG 20 1881
BCLllA-1397 + CUCGGUGGUGGACUAAACAG 20 1882
BCLllA-1398 + UCUCGGUGGUGGACUAAACA 20 1883
BCLllA-1399 + GUCUCGGUGGUGGACUAAAC 20 1884
BCLllA-1400 + UGUCUCGGUGGUGGACUAAA 20 1885
BCLllA-1401 + GUCCAAGUGAUGUCUCGGUG 20 1886
BCLllA-1402 + CCCCAGGCGCUCUAUGCGGU 20 1887
BCLllA-1403 + CCCCCAGGCGCUCUAUGCGG 20 1888
BCLllA-1404 + GCCCCCAGGCGCUCUAUGCG 20 1889
BCLllA-1405 + GCACUCGGGUGAUGGGUGGC 20 1890
BCLllA-1406 + CUGUCAAAGGCACUCGGGUG 20 1891
BCLllA-1407 + C AG CACCCUGU CAAAG G CAC 20 1892
BCLllA-1408 + GGCGGGAGGCUCCAUAGCCA 20 1893
BCLllA-1409 + CUCCUAGAGAAAUCCAUGGC 20 1894
BCLllA-1410 + UCUCCUAGAGAAAUCCAUGG 20 1895
BCLllA-1411 + GUCUCCUAGAGAAAUCCAUG 20 1896
BCLllA-1412 + CCAGCUCUCUAAGUCUCCUA 20 1897
BCLllA-1413 + UGCCAGCUCUCUAAGUCUCC 20 1898
BCLllA-1414 + GGGCCGGCCUGGGGACAGCG 20 1899
BCLllA-1415 + GCAUAGGGCUGGGCCGGCCU 20 1900
BCLllA-1416 + UGCAUAGGGCUGGGCCGGCC 20 1901
BCLllA-1417 + U UGCAUAGGGCUGGGCCGGC 20 1902
BCLllA-1418 + GCAGUAACCUUUGCAUAGGG 20 1903
BCLllA-1419 + UGGUUGCAGUAACCUU UGCA 20 1904
BCLllA-1420 + AGGGCGGCUUGCUACCUGGC 20 1905 BCLllA-1421 + AAGGGCGGCUUGCUACCUGG 20 1906
BCLllA-1422 + GGAGGGGGGGCGUCGCCAGG 20 1907
BCLllA-1423 + GAGGGAGGGGGGGCGUCGCC 20 1908
BCLllA-1424 + GGAGGGAGGGGGGGCGUCGC 20 1909
BCLllA-1425 + CGGAUUGCAGAGGAGGGAGG 20 1910
BCLllA-1426 + GCGGAUUGCAGAGGAGGGAG 20 1911
BCLllA-1427 + GGCGGAUUGCAGAGGAGGGA 20 1912
BCLllA-1428 + GGGCGGAUUGCAGAGGAGGG 20 1913
BCLllA-1429 + GGGGCGGAUUGCAGAGGAGG 20 1914
BCLllA-1430 + GAGGGGCGGAUUGCAGAGGA 20 1915
BCLllA-1431 + GGAGGGGCGGAUUGCAGAGG 20 1916
BCLllA-1432 + AGGAGGGGCGGAUUGCAGAG 20 1917
BCLllA-1433 + GGAGGAGGGGCGGAUUGCAG 20 1918
BCLllA-1434 + GGGAGGAGGGGCGGAUUGCA 20 1919
BCLllA-1435 + GAGGGAGGAGGGGCGGAUUG 20 1920
BCLllA-1436 + GGGGCUGGGAGGGAGGAGGG 20 1921
BCLllA-1437 + ACCGGGGGCUGGGAGGGAGG 20 1922
BCLllA-1438 + GACCGGGGGCUGGGAGGGAG 20 1923
BCLllA-1439 + UUGACCGGGGGCUGGGAGGG 20 1924
BCLllA-1440 + CUUGACCGGGGGCUGGGAGG 20 1925
BCLllA-1441 + GACUUGACCGGGGGCUGGGA 20 1926
BCLllA-1442 + GGACUUGACCGGGGGCUGGG 20 1927
BCLllA-1443 + UGGACUUGACCGGGGGCUGG 20 1928
BCLllA-1444 + CUUGGACUUGACCGGGGGCU 20 1929
BCLllA-1445 + ACUUGGACUUGACCGGGGGC 20 1930
BCLllA-1446 + GACUUGGACUUGACCGGGGG 20 1931
BCLllA-1447 + CGCAUGACUUGGACUUGACC 20 1932
BCLllA-1448 + UCGCAUGACU UGGACU UGAC 20 1933
BCLllA-1449 + CUCGCAUGACUUGGACUUGA 20 1934
BCLllA-1450 + UGCCGCAGAACUCGCAUGAC 20 1935
BCLllA-1451 + GAAAUUUGAACGUCUUGCCG 20 1936
BCLllA-1452 + CCACCAGGU UGCUCUGAAAU 20 1937
BCLllA-1453 + CGGUGCACCACCAGGUUGCU 20 1938
BCLllA-1454 + GGUCGCACAGGUUGCACUUG 20 1939
BCLllA-1455 + UGGCGCU UCAGCUUGCUGGC 20 1940
BCLllA-1456 + CGUCGGACU UGACCGUCAUG 20 1941
BCLllA-1457 + UCGUCGGACUUGACCGUCAU 20 1942
BCLllA-1458 + GUCGUCGGACUUGACCGUCA 20 1943
BCLllA-1459 + CGUCGUCGGACUUGACCGUC 20 1944
BCLllA-1460 + UGGCGGUGGAGAGACCGUCG 20 1945
BCLllA-1461 + GU UCCGGGGAGCUGGCGGUG 20 1946
BCLllA-1462 + GGGUUCCGGGGAGCUGGCGG 20 1947 BCLllA-1463 + CGGGU UCCGGGGAGCUGGCG 20 1948
BCLllA-1464 + GUCGCUGGUGCCGGGU UCCG 20 1949
BCLllA-1465 + AGUCGCUGGUGCCGGGUUCC 20 1950
BCLllA-1466 + AAGUCGCUGGUGCCGGGUUC 20 1951
BCLllA-1467 + CAAGUCGCUGGUGCCGGGUU 20 1952
BCLllA-1468 + UGCCCACCAAGUCGCUGGUG 20 1953
BCLllA-1469 + UGAACUUGGCCACCACGGAC 20 1954
BCLllA-1470 + CGCUCU UGAACUUGGCCACC 20 1955
BCLllA-1471 + GGUUGGGGUCGUUCUCGCUC 20 1956
BCLllA-1472 + CCCGUUCUCCGGGAUCAGGU 20 1957
BCLllA-1473 + CCCCGUUCUCCGGGAUCAGG 20 1958
BCLllA-1474 + UCCUCCUCGUCCCCGUUCUC 20 1959
BCLllA-1475 + UUCCUCCUCGUCCCCGUUCU 20 1960
BCLllA-1476 + GCGCCGCCUCCAGGCUCAGC 20 1961
BCLllA-1477 + CACGCCCACGACCGCGCCCC 20 1962
BCLllA-1478 + AUGCCCUGCAUGACGUCGGG 20 1963
BCLllA-1479 + GCACCAUGCCCUGCAUGACG 20 1964
BCLllA-1480 + CGCUGAAGUGCUGCAUGGAG 20 1965
BCLllA-1481 + GGCCUCGCUGAAGUGCUGCA 20 1966
BCLllA-1482 + AGGCCUCGCUGAAGUGCUGC 20 1967
BCLllA-1483 + GGACCUGGUGGAAGGCCUCG 20 1968
BCLllA-1484 + GCUUCUCGCCCAGGACCUGG 20 1969
BCLllA-1485 + UGCUUCUCGCCCAGGACCUG 20 1970
BCLllA-1486 + CCGCGCUUAUGCU UCUCGCC 20 1971
BCLllA-1487 + GCGGUCCGACUCGCCGGCCA 20 1972
BCLllA-1488 + CCCCGAGGCCGACUCGCCCG 20 1973
BCLllA-1489 + CCCCCGAGGCCGACUCGCCC 20 1974
BCLllA-1490 + CCCCCCGAGGCCGACUCGCC 20 1975
BCLllA-1491 + GCCCCCCGAGGCCGACUCGC 20 1976
BCLllA-1492 + CAGCUUUUUGGACAGGCCCC 20 1977
BCLllA-1493 + GGCUGCCCAGCAGCAGCUUU 20 1978
BCLllA-1494 + AGAGAAGGGGCUCAGCGAGC 20 1979
BCLllA-1495 + UAGAGAAGGGGCUCAGCGAG 20 1980
BCLllA-1496 + GCGCUUAGAGAAGGGGCUCA 20 1981
BCLllA-1497 + GAGCUUGAUGCGCUUAGAGA 20 1982
BCLllA-1498 + CGAGCU UGAUGCGCUUAGAG 20 1983
BCLllA-1499 + UCUCGAGCUUGAUGCGCUUA 20 1984
BCLllA-1500 + CUUCUCGAGCUUGAUGCGCU 20 1985
BCLllA-1501 + GGGGCAGGUCGAACUCCUUC 20 1986
BCLllA-1502 + GCAUCGCGGCCGGGGGCAGG 20 1987
BCLllA-1503 + CCGUGUUGGGCAUCGCGGCC 20 1988
BCLllA-1504 + UCCGUGUUGGGCAUCGCGGC 20 1989 BCLllA-1505 + CUCCGUGUUGGGCAUCGCGG 20 1990
BCLllA-1506 + GCGAGUACACGUUCUCCGUG 20 1991
BCLllA-1507 + CGCGUAGCCGGCGAGCCACU 20 1992
BCLllA-1508 + GCCUGGAGGCCGCGUAGCCG 20 1993
BCLllA-1509 + GAAGGGAUCUUUGAGCUGCC 20 1994
BCLllA-1510 + GGAAGGGAUCUUUGAGCUGC 20 1995
BCLllA-1511 + CGAAGCUAAGGAAGGGAUCU 20 1996
BCLllA-1512 + GGAGUCUCCGAAGCUAAGGA 20 1997
BCLllA-1513 + UGGAGUCUCCGAAGCUAAGG 20 1998
BCLllA-1514 + GUCUGGAGUCUCCGAAGCUA 20 1999
BCLllA-1515 + UGUCUGGAGUCUCCGAAGCU 20 2000
BCLllA-1516 + AAGGCGAUUGUCUGGAGUCU 20 2001
BCLllA-1517 + GGAGGCAAAAGGCGAUUGUC 20 2002
BCLllA-1518 + AGGAGGCAAAAGGCGAUUGU 20 2003
BCLllA-1519 + CUCCGAGGAGUGCUCCGACG 20 2004
BCLllA-1520 + UCUCCGAGGAGUGCUCCGAC 20 2005
BCLllA-1521 + GUUCUCCGAGGAGUGCUCCG 20 2006
BCLllA-1522 + GCGCAAACUCCCGUUCUCCG 20 2007
BCLllA-1523 + AGCGCAAACUCCCGUUCUCC 20 2008
BCLllA-1524 + GAAGCGCAAACUCCCGUUCU 20 2009
BCLllA-1525 + CCAGCUCCCCGGGCGGUGUG 20 2010
BCLllA-1526 + GUCCAGCUCCCCGGGCGGUG 20 2011
BCLllA-1527 + CGUCCAGCUCCCCGGGCGGU 20 2012
BCLllA-1528 + AGAUCCCUCCGUCCAGCUCC 20 2013
BCLllA-1529 + ACUUCCCGUGCCGCUGCGCC 20 2014
BCLllA-1530 + CCGGGCCCGGACCACUAAUA 20 2015
BCLllA-1531 + CCCGGGCCCGGACCACUAAU 20 2016
BCLllA-1532 + UGAGCUGGGCCUGCCCGGGC 20 2017
BCLllA-1533 + CUCU UUUGAGCUGGGCCUGC 20 2018
BCLllA-1534 + UGCGUCUGCCCUCUUU UGAG 20 2019
BCLllA-1535 + GUCGCUGCGUCUGCCCUCUU 20 2020
BCLllA-1536 + UUGUACAUGUGUAGCUG 17 2021
BCLllA-1537 + AGAGAAACCAUGCACUG 17 2022
BCLllA-1538 + UUCUGUGCGUGUUGCAA 17 2023
BCLllA-1539 + UGUUCUGUGCGUGUUGC 17 2024
BCLllA-1540 + AAGUAGAUUCUUAAUCC 17 2025
BCLllA-1541 + ACCAACCCGCGGGGUCA 17 2026
BCLllA-1542 + UACCAACCCGCGGGGUC 17 2027
BCLllA-1543 + AUACCAACCCGCGGGGU 17 2028
BCLllA-1544 + GAAGGGAUACCAACCCG 17 2029
BCLllA-1545 + UGAAGGGAUACCAACCC 17 2030
BCLllA-1546 + UCUGCACCUAGUCCUGA 17 2031 BCLllA-1547 + U UCUGCACCUAGUCCUG 17 2032
BCLllA-1548 + ACAUUCUGCACCUAGUC 17 2033
BCLllA-1549 + AUGGAGAGGUGGCUGGG 17 2034
BCLllA-1550 + CCCAUGGAGAGGUGGCU 17 2035
BCLllA-1551 + UCCCAUGGAGAGGUGGC 17 2036
BCLllA-1552 + AUCCCAUGGAGAGGUGG 17 2037
BCLllA-1553 + GCAAUAUGAAUCCCAUG 17 2038
BCLllA-1554 + CUGCAAUAUGAAUCCCA 17 2039
BCLllA-1555 + UCUGCAAUAUGAAUCCC 17 2040
BCLllA-1556 + GGGUUAUUGUCUGCAAU 17 2041
BCLllA-1557 + UAUUCUUAGCAGGUUAA 17 2042
BCLllA-1558 + GUAUUCUUAGCAGGUUA 17 2043
BCLllA-1559 + GCGCCCUUCUGCCAGGC 17 2044
BCLllA-1560 + AGCGCCCUUCUGCCAGG 17 2045
BCLllA-1561 + AACAGGGGGGGAGUGGG 17 2046
BCLllA-1562 + AAACAGGGGGGGAGUGG 17 2047
BCLllA-1563 + GACUAAACAGGGGGGGA 17 2048
BCLllA-1564 + GGUGGACUAAACAGGGG 17 2049
BCLllA-1565 + UGGUGGACUAAACAGGG 17 2050
BCLllA-1566 + GUGGUGGACUAAACAGG 17 2051
BCLllA-1567 + GGUGGUGGACUAAACAG 17 2052
BCLllA-1568 + CGGUGGUGGACUAAACA 17 2053
BCLllA-1569 + UCGGUGGUGGACUAAAC 17 2054
BCLllA-1570 + CUCGGUGGUGGACUAAA 17 2055
BCLllA-1571 + CAAGUGAUGUCUCGGUG 17 2056
BCLllA-1572 + CAGGCGCUCUAUGCGGU 17 2057
BCLllA-1573 + CCAGGCGCUCUAUGCGG 17 2058
BCLllA-1574 + CCCAGGCGCUCUAUGCG 17 2059
BCLllA-1575 + CUCGGGUGAUGGGUGGC 17 2060
BCLllA-1576 + UCAAAGGCACUCGGGUG 17 2061
BCLllA-1577 + CACCCUGUCAAAGGCAC 17 2062
BCLllA-1578 + GGGAGGCUCCAUAGCCA 17 2063
BCLllA-1579 + CUAGAGAAAUCCAUGGC 17 2064
BCLllA-1580 + CCUAGAGAAAUCCAUGG 17 2065
BCLllA-1581 + UCCUAGAGAAAUCCAUG 17 2066
BCLllA-1582 + GCUCUCUAAGUCUCCUA 17 2067
BCLllA-1583 + CAGCUCUCUAAGUCUCC 17 2068
BCLllA-1584 + CCGGCCUGGGGACAGCG 17 2069
BCLllA-1585 + UAGGGCUGGGCCGGCCU 17 2070
BCLllA-1586 + AUAGGGCUGGGCCGGCC 17 2071
BCLllA-1587 + CAUAGGGCUGGGCCGGC 17 2072
BCLllA-1588 + GUAACCUUUGCAUAGGG 17 2073 BCLllA-1589 + U UGCAGUAACCU UUGCA 17 2074
BCLllA-1590 + GCGGCUUGCUACCUGGC 17 2075
BCLllA-1591 + GGCGGCU UGCUACCUGG 17 2076
BCLllA-1592 + GGGGGGGCGUCGCCAGG 17 2077
BCLllA-1593 + GGAGGGGGGGCGUCGCC 17 2078
BCLllA-1594 + GGGAGGGGGGGCGUCGC 17 2079
BCLllA-1595 + AUUGCAGAGGAGGGAGG 17 2080
BCLllA-1596 + GAUUGCAGAGGAGGGAG 17 2081
BCLllA-1597 + GGAUUGCAGAGGAGGGA 17 2082
BCLllA-1598 + CGGAUUGCAGAGGAGGG 17 2083
BCLllA-1599 + GCGGAUUGCAGAGGAGG 17 2084
BCLllA-1600 + GGGCGGAUUGCAGAGGA 17 2085
BCLllA-1601 + GGGGCGGAUUGCAGAGG 17 2086
BCLllA-1602 + AGGGGCGGAUUGCAGAG 17 2087
BCLllA-1603 + GGAGGGGCGGAUUGCAG 17 2088
BCLllA-1604 + AGGAGGGGCGGAUUGCA 17 2089
BCLllA-1605 + GGAGGAGGGGCGGAUUG 17 2090
BCLllA-1606 + GCUGGGAGGGAGGAGGG 17 2091
BCLllA-1607 + GGGGGCUGGGAGGGAGG 17 2092
BCLllA-1608 + CGGGGGCUGGGAGGGAG 17 2093
BCLllA-1609 + ACCGGGGGCUGGGAGGG 17 2094
BCLllA-1610 + GACCGGGGGCUGGGAGG 17 2095
BCLllA-1611 + UUGACCGGGGGCUGGGA 17 2096
BCLllA-1612 + CUUGACCGGGGGCUGGG 17 2097
BCLllA-1613 + ACUUGACCGGGGGCUGG 17 2098
BCLllA-1614 + GGACUUGACCGGGGGCU 17 2099
BCLllA-1615 + UGGACUUGACCGGGGGC 17 2100
BCLllA-1616 + UUGGACUUGACCGGGGG 17 2101
BCLllA-1617 + AUGACUUGGACUUGACC 17 2102
BCLllA-1618 + CAUGACUUGGACUUGAC 17 2103
BCLllA-1619 + GCAUGACUUGGACUUGA 17 2104
BCLllA-1620 + CGCAGAACUCGCAUGAC 17 2105
BCLllA-1621 + AUUUGAACGUCUUGCCG 17 2106
BCLllA-1622 + CCAGGU UGCUCUGAAAU 17 2107
BCLllA-1623 + UGCACCACCAGGUUGCU 17 2108
BCLllA-1624 + CGCACAGGUUGCACUUG 17 2109
BCLllA-1625 + CGCUUCAGCUUGCUGGC 17 2110
BCLllA-1626 + CGGACUUGACCGUCAUG 17 2111
BCLllA-1627 + UCGGACUUGACCGUCAU 17 2112
BCLllA-1628 + GUCGGACUUGACCGUCA 17 2113
BCLllA-1629 + CGUCGGACU UGACCGUC 17 2114
BCLllA-1630 + CGGUGGAGAGACCGUCG 17 2115 BCLllA-1631 + CCGGGGAGCUGGCGGUG 17 2116
BCLllA-1632 + U UCCGGGGAGCUGGCGG 17 2117
BCLllA-1633 + GUUCCGGGGAGCUGGCG 17 2118
BCLllA-1634 + GCUGGUGCCGGGUUCCG 17 2119
BCLllA-1635 + CGCUGGUGCCGGGUUCC 17 2120
BCLllA-1636 + UCGCUGGUGCCGGGUUC 17 2121
BCLllA-1637 + GUCGCUGGUGCCGGGUU 17 2122
BCLllA-1638 + CCACCAAGUCGCUGGUG 17 2123
BCLllA-1639 + ACU UGGCCACCACGGAC 17 2124
BCLllA-1640 + UCU UGAACUUGGCCACC 17 2125
BCLllA-1641 + UGGGGUCGUUCUCGCUC 17 2126
BCLllA-1642 + GU UCUCCGGGAUCAGGU 17 2127
BCLllA-1643 + CGU UCUCCGGGAUCAGG 17 2128
BCLllA-1644 + UCCUCGUCCCCGUUCUC 17 2129
BCLllA-1645 + CUCCUCGUCCCCGU UCU 17 2130
BCLllA-1646 + CCGCCUCCAGGCUCAGC 17 2131
BCLllA-1647 + GCCCACGACCGCGCCCC 17 2132
BCLllA-1648 + CCCUGCAUGACGUCGGG 17 2133
BCLllA-1649 + CCAUGCCCUGCAUGACG 17 2134
BCLllA-1650 + UGAAGUGCUGCAUGGAG 17 2135
BCLllA-1651 + CUCGCUGAAGUGCUGCA 17 2136
BCLllA-1652 + CCUCGCUGAAGUGCUGC 17 2137
BCLllA-1653 + CCUGGUGGAAGGCCUCG 17 2138
BCLllA-1654 + UCUCGCCCAGGACCUGG 17 2139
BCLllA-1655 + U UCUCGCCCAGGACCUG 17 2140
BCLllA-1656 + CGCUUAUGCUUCUCGCC 17 2141
BCLllA-1657 + GUCCGACUCGCCGGCCA 17 2142
BCLllA-1658 + CGAGGCCGACUCGCCCG 17 2143
BCLllA-1659 + CCGAGGCCGACUCGCCC 17 2144
BCLllA-1660 + CCCGAGGCCGACUCGCC 17 2145
BCLllA-1661 + CCCCGAGGCCGACUCGC 17 2146
BCLllA-1662 + CUU UUUGGACAGGCCCC 17 2147
BCLllA-1663 + UGCCCAGCAGCAGCUU U 17 2148
BCLllA-1664 + GAAGGGGCUCAGCGAGC 17 2149
BCLllA-1665 + AGAAGGGGCUCAGCGAG 17 2150
BCLllA-1666 + CUUAGAGAAGGGGCUCA 17 2151
BCLllA-1667 + CUUGAUGCGCUUAGAGA 17 2152
BCLllA-1668 + GCUUGAUGCGCUUAGAG 17 2153
BCLllA-1669 + CGAGCU UGAUGCGCUUA 17 2154
BCLllA-1670 + CUCGAGCU UGAUGCGCU 17 2155
BCLllA-1671 + GCAGGUCGAACUCCUUC 17 2156
BCLllA-1672 + UCGCGGCCGGGGGCAGG 17 2157 BCLllA-1673 + UGUUGGGCAUCGCGGCC 17 2158
BCLllA-1674 + GUGUUGGGCAUCGCGGC 17 2159
BCLllA-1675 + CGUGUUGGGCAUCGCGG 17 2160
BCLllA-1676 + AGUACACGUUCUCCGUG 17 2161
BCLllA-1677 + GUAGCCGGCGAGCCACU 17 2162
BCLllA-1678 + UGGAGGCCGCGUAGCCG 17 2163
BCLllA-1679 + GGGAUCUUUGAGCUGCC 17 2164
BCLllA-1680 + AGGGAUCUUUGAGCUGC 17 2165
BCLllA-1681 + AGCUAAGGAAGGGAUCU 17 2166
BCLllA-1682 + GUCUCCGAAGCUAAGGA 17 2167
BCLllA-1683 + AGUCUCCGAAGCUAAGG 17 2168
BCLllA-1684 + UGGAGUCUCCGAAGCUA 17 2169
BCLllA-1685 + CUGGAGUCUCCGAAGCU 17 2170
BCLllA-1686 + GCGAUUGUCUGGAGUCU 17 2171
BCLllA-1687 + GGCAAAAGGCGAUUGUC 17 2172
BCLllA-1688 + AGGCAAAAGGCGAUUGU 17 2173
BCLllA-1689 + CGAGGAGUGCUCCGACG 17 2174
BCLllA-1690 + CCGAGGAGUGCUCCGAC 17 2175
BCLllA-1691 + CUCCGAGGAGUGCUCCG 17 2176
BCLllA-1692 + CAAACUCCCGUUCUCCG 17 2177
BCLllA-1693 + GCAAACUCCCGUUCUCC 17 2178
BCLllA-1694 + GCGCAAACUCCCGUUCU 17 2179
BCLllA-1695 + GCUCCCCGGGCGGUGUG 17 2180
BCLllA-1696 + CAGCUCCCCGGGCGGUG 17 2181
BCLllA-1697 + CCAGCUCCCCGGGCGGU 17 2182
BCLllA-1698 + UCCCUCCGUCCAGCUCC 17 2183
BCLllA-1699 + UCCCGUGCCGCUGCGCC 17 2184
BCLllA-1700 + GGCCCGGACCACUAAUA 17 2185
BCLllA-1701 + GGGCCCGGACCACUAAU 17 2186
BCLllA-1702 + GCUGGGCCUGCCCGGGC 17 2187
BCLllA-1703 + U UUUGAGCUGGGCCUGC 17 2188
BCLllA-1704 + GUCUGCCCUCU UUUGAG 17 2189
BCLllA-1705 + GCUGCGUCUGCCCUCU U 17 2190
BCLllA-1706 - CCCCCAUUCGGCGUAGUACC 20 2191
BCLllA-1707 - CCCAUUCGGCGUAGUACCCA 20 2192
BCLllA-1708 - CUCAAGAUGUGUGGCAGUUU 20 2193
BCLllA-1709 - AGAUGUGUGGCAGUUU UCGG 20 2194
BCLllA-1710 - GAUGUGUGGCAGUU UUCGGA 20 2195
BCLllA-1711 - GGCAGUUUUCGGAUGGAAGC 20 2196
BCLllA-1712 - CAGUUUUCGGAUGGAAGCUC 20 2197
BCLllA-1713 - CCAUUCGGCGUAGUACC 17 2198
BCLllA-1714 - AUUCGGCGUAGUACCCA 17 2199 BCLllA-1715 - AAGAUGUGUGGCAGUUU 17 2200
BCLllA-1716 - UGUGUGGCAGUUUUCGG 17 2201
BCLllA-1717 - GUGUGGCAGUUU UCGGA 17 2202
BCLllA-1718 - AGUUUUCGGAUGGAAGC 17 2203
BCLllA-1719 - U UUUCGGAUGGAAGCUC 17 2204
BCLllA-1720 + ACGCCGAAUGGGGGUGUGUG 20 2205
BCLllA-1721 + ACUACGCCGAAUGGGGGUGU 20 2206
BCLllA-1722 + CUCUGGGUACUACGCCGAAU 20 2207
BCLllA-1723 + UCUCUGGGUACUACGCCGAA 20 2208
BCLllA-1724 + CUCUCUGGGUACUACGCCGA 20 2209
BCLllA-1725 + UGAGCUCUCUGGGUACUACG 20 2210
BCLllA-1726 + UGCCACACAUCUUGAGCUCU 20 2211
BCLllA-1727 + UCCGAAAACUGCCACACAUC 20 2212
BCLllA-1728 + AAGGGCUCUCGAGCUUCCAU 20 2213
BCLllA-1729 + CCGAAUGGGGGUGUGUG 17 2214
BCLllA-1730 + ACGCCGAAUGGGGGUGU 17 2215
BCLllA-1731 + UGGGUACUACGCCGAAU 17 2216
BCLllA-1732 + CUGGGUACUACGCCGAA 17 2217
BCLllA-1733 + UCUGGGUACUACGCCGA 17 2218
BCLllA-1734 + GCUCUCUGGGUACUACG 17 2219
BCLllA-1735 + CACACAUCUUGAGCUCU 17 2220
BCLllA-1736 + G AAAACUG CCACACAU C 17 2221
BCLllA-1737 + GGCUCUCGAGCUUCCAU 17 2222
Table 2F provides exemplary targeting domains for knocking out the BCL11A gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non- complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting ths same target position. Table 2F
Figure imgf000171_0001
BCLllA-1739 - UGCAACACGCACAGAACACU 20 2224
BCLllA-1740 - UCCUUCCCAGCCACCUCUCC 20 2225
BCLllA-1741 - AUGGCUAUGGAGCCUCCCGC 20 2226
BCLllA-1742 - CAGGUCACGCCAGAGGA 17 2227
BCLllA-1743 - AACACG CACAG AACACU 17 2228
BCLllA-1744 - UUCCCAGCCACCUCUCC 17 2229
BCLllA-1745 - GCUAUGGAGCCUCCCGC 17 2230
BCLllA-1746 + UGAAAAAAGCAUCCAAUCCC 20 2231
BCLllA-1747 + GGAGGUUGGCAUCCAGGUCA 20 2232
BCLllA-1748 + CGCCUGGGAUGAGUGCAGAA 20 2233
BCLllA-1749 + UAGAAAGCGAACACGGAAGU 20 2234
BCLllA-1750 + GGCUAUGGAGCCUCCCGCCA 20 2235
BCLllA-1751 + CCUCCUCCCUCCCAGCCCCC 20 2236
BCLllA-1752 + CCCAUGACGGUCAAGUCCGA 20 2237
BCLllA-1753 + UUUGCCUCCUCGUCGGAGCA 20 2238
BCLllA-1754 + UGAAAAAAGCAUCCAAU 17 2239
BCLllA-1755 + GGAGGUUGGCAUCCAGG 17 2240
BCLllA-1756 + CGCCUGGGAUGAGUGCA 17 2241
BCLllA-1757 + UAGAAAGCGAACACGGA 17 2242
BCLllA-1758 + GGCUAUGGAGCCUCCCG 17 2243
BCLllA-1759 + CCUCCUCCCUCCCAGCC 17 2244
BCLllA-1760 + CCCAUGACGGUCAAGUC 17 2245
BCLllA-1761 + U UUGCCUCCUCGUCGGA 17 2246
Table 3A provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 3A
Figure imgf000172_0001
BCLllA-1766 - GCCUCUGAGGUUCGGUCGGG 20 2251
BCLllA-1767 - CCUCUGAGGUUCGGUCGGGA 20 2252
BCLllA-1768 - CUCUGAGGUUCGGUCGGGAG 20 2253
BCLllA-1769 - UGAGGUUCGGUCGGGAGGGG 20 2254
BCLllA-1770 - GAGGUUCGGUCGGGAGGGGA 20 2255
BCLllA-1771 - CGGUCGGGAGGGGAGGGCAG 20 2256
BCLllA-1772 - GGGGAGGGCAGCGGCAACCC 20 2257
BCLllA-1773 - GAGGGCAGCGGCAACCCAGG 20 2258
BCLllA-1774 - CAACCCAGGAGGCAGCAGUC 20 2259
BCLllA-1775 - AACCCAGGAGGCAGCAGUCC 20 2260
BCLllA-1776 - CUCCCUCUCCCGCGUGCCCC 20 2261
BCLllA-1777 - CCCCCGGCCGCCUCCUCCCC 20 2262
BCLllA-1778 - CGGCCCUAGCUCCUGCCCUU 20 2263
BCLllA-1779 - CCCUAGCUCCUGCCCUUCGG 20 2264
BCLllA-1780 - UAGCUCCUGCCCUUCGGCGG 20 2265
BCLllA-1781 - CUCCUGCCCUUCGGCGGCGG 20 2266
BCLllA-1782 - CUGCCCUUCGGCGGCGGCGG 20 2267
BCLllA-1783 - CCCUUCGGCGGCGGCGGCGG 20 2268
BCLllA-1784 - UUCGGCGGCGGCGGCGGCGG 20 2269
BCLllA-1785 - CGGCGGCGGCGGCGGCGGCG 20 2270
BCLllA-1786 - GGCGGCGGCGGCGGCGGCGC 20 2271
BCLllA-1787 - GGCGGCGGCGGCGGCGCGGG 20 2272
BCLllA-1788 - GCGGCGGCGGCGGCGCGGGA 20 2273
BCLllA-1789 - GGCGCGGGAGGGCAAGCGCG 20 2274
BCLllA-1790 - GGAGGGCAAGCGCGAGGAGC 20 2275
BCLllA-1791 - GCGCGAGGAGCCGGCACAAA 20 2276
BCLllA-1792 - GGAGCCGGCACAAAAGGCAG 20 2277
BCLllA-1793 - GAGCCGGCACAAAAGGCAGC 20 2278
BCLllA-1794 - GCGGGACAAACACCCACCUC 20 2279
BCLllA-1795 - GACAAACACCCACCUCUGGC 20 2280
BCLllA-1796 - CCACCUCUGGCCGGAACAAA 20 2281
BCLllA-1797 - CCUCUGGCCGGAACAAAAGG 20 2282
BCLllA-1798 - GGAACAAAAGGCGGCAGUGC 20 2283
BCLllA-1799 - GCCGCGUCUCCCGUCCUUCC 20 2284
BCLllA-1800 - UCCCGUCCUUCCCGGUCCCA 20 2285
BCLllA-1801 - CACGGCUCUCCCCGUCGCCG 20 2286
BCLllA-1802 - CGGCCCCUCUCCCGACUCCG 20 2287
BCLllA-1803 - UCUCCCGACUCCGCGGACUC 20 2288
BCLllA-1804 - CUCCGCGGACUCAGGAGCGC 20 2289
BCLllA-1805 - UCCGCGGACUCAGGAGCGCC 20 2290
BCLllA-1806 - CCGCGGACUCAGGAGCGCCG 20 2291
BCLllA-1807 - CGCGGACUCAGGAGCGCCGG 20 2292 BCLllA-1808 - GUGCCACUUUCUCACUAUUG 20 2293
BCLllA-1809 - UGCCACUUUCUCACUAUUGU 20 2294
BCLllA-1810 - GCCACUUUCUCACUAUUGUG 20 2295
BCLllA-1811 - ACACUUGACCGUGAGCGCGC 20 2296
BCLllA-1812 - AGUCUCACCUCUUUUCUCCC 20 2297
BCLllA-1813 - GUCUCACCUCUUUUCUCCCC 20 2298
BCLllA-1814 - CCUACCCCCCCAUUUUCUUA 20 2299
BCLllA-1815 - CCCCAUUUUCUUACGGUGAG 20 2300
BCLllA-1816 - CCCAUUUUCUUACGGUGAGU 20 2301
BCLllA-1817 - CCCCACCAGCUCCCACCCCC 20 2302
BCLllA-1818 - UGUUCAUUAUUUUGCAAAAC 20 2303
BCLllA-1819 - UCAUUAUUUUGCAAAACUGG 20 2304
BCLllA-1820 - CAUUAUUUUGCAAAACUGGC 20 2305
BCLllA-1821 - AUUAUUUUGCAAAACUGGCG 20 2306
BCLllA-1822 - AUUUUGCAAAACUGGCGGGG 20 2307
BCLllA-1823 - UUUUGCAAAACUGGCGGGGC 20 2308
BCLllA-1824 - UUUGCAAAACUGGCGGGGCG 20 2309
BCLllA-1825 - UUGCAAAACUGGCGGGGCGG 20 2310
BCLllA-1826 - UGCAAAACUGGCGGGGCGGG 20 2311
BCLllA-1827 - GCAAAACUGGCGGGGCGGGG 20 2312
BCLllA-1828 - CAAAACUGGCGGGGCGGGGG 20 2313
BCLllA-1829 - CUGGCGGGGCGGGGGGGGAG 20 2314
BCLllA-1830 - U U U CG A A A AG AG AAA U A A AG 20 2315
BCLllA-1831 - CGAAAAGAGAAAUAAAGCGG 20 2316
BCLllA-1832 - AGAGAAAUAAAGCGGCGGAA 20 2317
BCLllA-1833 - GAAAUAAAGCGGCGGAAAGG 20 2318
BCLllA-1834 - AGCGGCGGAAAGGAGGAAAG 20 2319
BCLllA-1835 - GGCGGAAAGGAGGAAAGAGG 20 2320
BCLllA-1836 - UAAAAU U AAAU AAAAU U AAA 20 2321
BCLllA-1837 - CUGUCUCAAAAGUGCAUACA 20 2322
BCLllA-1838 - CAAAAGUGCAUACACGGCAA 20 2323
BCLllA-1839 - UACACGGCAAUGGUUCCAGA 20 2324
BCLllA-1840 - ACACGGCAAUGGUUCCAGAU 20 2325
BCLllA-1841 - CAAUGGUUCCAGAUGGGAUG 20 2326
BCLllA-1842 - AAUGGUUCCAGAUGGGAUGA 20 2327
BCLllA-1843 - AUCUCUUUUACCUCGACUCU 20 2328
BCLllA-1844 - UCUUUUACCUCGACUCUCGG 20 2329
BCLllA-1845 - AUAAUUAUUAUUACUAUUAU 20 2330
BCLllA-1846 - UAAUUAUUAUUACUAUUAUU 20 2331
BCLllA-1847 + UAAUAAUCACGAGAGCGCGC 20 2332
BCLllA-1848 + CAGGACUAGAAGCAAAAGCG 20 2333
BCLllA-1849 + AGGACUAGAAGCAAAAGCGA 20 2334 BCLllA-1850 + GGACUAGAAGCAAAAGCGAG 20 2335
BCLllA-1851 + GACUAGAAGCAAAAGCGAGG 20 2336
BCLllA-1852 + AGCAAAAGCGAGGGGGAGAG 20 2337
BCLllA-1853 + GCAAAAGCGAGGGGGAGAGA 20 2338
BCLllA-1854 + CAAAAGCGAGGGGGAGAGAG 20 2339
BCLllA-1855 + AGAAAAACCUCCGAGAGUCG 20 2340
BCLllA-1856 + AGUCGAGGUAAAAGAGAUAA 20 2341
BCLllA-1857 + GUCGAGGUAAAAGAGAUAAA 20 2342
BCLllA-1858 + U CG AGG U AAAAG AG AU AAAG 20 2343
BCLllA-1859 + CG AGG U AAAAG AG AUAAAGG 20 2344
BCLllA-1860 + GAAAAAACCCUCAUCCCAUC 20 2345
BCLllA-1861 + CUUUAUUUCUCUUUUCGAAA 20 2346
BCLllA-1862 + CAAAAUAAUGAACAAUGCUA 20 2347
BCLllA-1863 + GAACAACUCACAUGCAAACC 20 2348
BCLllA-1864 + AACAACUCACAUGCAAACCU 20 2349
BCLllA-1865 + ACAACUCACAUGCAAACCUG 20 2350
BCLllA-1866 + CAACUCACAUGCAAACCUGG 20 2351
BCLllA-1867 + CUCACAUGCAAACCUGGGGG 20 2352
BCLllA-1868 + UCACAUGCAAACCUGGGGGU 20 2353
BCLllA-1869 + GCAAACCUGGGGGUGGGAGC 20 2354
BCLllA-1870 + AACCUGGGGGUGGGAGCUGG 20 2355
BCLllA-1871 + ACCUGGGGGUGGGAGCUGGU 20 2356
BCLllA-1872 + CCUGGGGGUGGGAGCUGGUG 20 2357
BCLllA-1873 + GGGUGGGAGCUGGUGGGGAA 20 2358
BCLllA-1874 + GGUGGGAGCUGGUGGGGAAA 20 2359
BCLllA-1875 + GGGAGCUGGUGGGGAAAGGG 20 2360
BCLllA-1876 + U CCCACU CACCG U AAG AAAA 20 2361
BCLllA-1877 + CCCACU CACCG U AAG AAAAU 20 2362
BCLllA-1878 + CCACUCACCGUAAGAAAAUG 20 2363
BCLllA-1879 + CACU CACCG U AAG AAAAUGG 20 2364
BCLllA-1880 + ACU CACCG U AAG AAAAU GGG 20 2365
BCLllA-1881 + CUCACCGUAAGAAAAUGGGG 20 2366
BCLllA-1882 + CCGUAAGAAAAUGGGGGGGU 20 2367
BCLllA-1883 + CGUAAGAAAAUGGGGGGGUA 20 2368
BCLllA-1884 + AAGAAAAUGGGGGGGUAGGG 20 2369
BCLllA-1885 + AGAAAAUGGGGGGGUAGGGA 20 2370
BCLllA-1886 + CAAGUCUAAAAAACGAUUCC 20 2371
BCLllA-1887 + AAGUCUAAAAAACGAUUCCC 20 2372
BCLllA-1888 + AGUCUAAAAAACGAUUCCCG 20 2373
BCLllA-1889 + ACGAUUCCCGGGGAGAAAAG 20 2374
BCLllA-1890 + GGGGAGAAAAGAGGUGAGAC 20 2375
BCLllA-1891 + AAAGAGGUGAGACUGGCUUU 20 2376 BCLllA-1892 + UUUGGACACCAGCGCGCUCA 20 2377
BCLllA-1893 + GCUCACGGUCAAGUGUGCAG 20 2378
BCLllA-1894 + CUCACGGUCAAGUGUGCAGC 20 2379
BCLllA-1895 + ACGGUCAAGUGUGCAGCGGG 20 2380
BCLllA-1896 + UCCCCACAAUAGUGAGAAAG 20 2381
BCLllA-1897 + AUAGUGAGAAAGUGGCACUG 20 2382
BCLllA-1898 + GAGAAAGUGGCACUGUGGAA 20 2383
BCLllA-1899 + AGAAAGUGGCACUGUGGAAA 20 2384
BCLllA-1900 + GAAAGUGGCACUGUGGAAAG 20 2385
BCLllA-1901 + GCACUGUGGAAAGGGGCCCC 20 2386
BCLllA-1902 + CCCCGGCGCUCCUGAGUCCG 20 2387
BCLllA-1903 + CGCUCCUGAGUCCGCGGAGU 20 2388
BCLllA-1904 + GCUCCUGAGUCCGCGGAGUC 20 2389
BCLllA-1905 + UGAGUCCGCGGAGUCGGGAG 20 2390
BCLllA-1906 + GAGUCCGCGGAGUCGGGAGA 20 2391
BCLllA-1907 + AGUCCGCGGAGUCGGGAGAG 20 2392
BCLllA-1908 + CGGAGUCGGGAGAGGGGCCG 20 2393
BCLllA-1909 + CGGGAGAGGGGCCGCGGCGA 20 2394
BCLllA-1910 + GGGAGAGGGGCCGCGGCGAC 20 2395
BCLllA-1911 + GGAGAGGGGCCGCGGCGACG 20 2396
BCLllA-1912 + CGCGGCGACGGGGAGAGCCG 20 2397
BCLllA-1913 + GCGGCGACGGGGAGAGCCGU 20 2398
BCLllA-1914 + GACGGGGAGAGCCGUGGGAC 20 2399
BCLllA-1915 + ACGGGGAGAGCCGUGGGACC 20 2400
BCLllA-1916 + GGAGAGCCGUGGGACCGGGA 20 2401
BCLllA-1917 + AGCCGUGGGACCGGGAAGGA 20 2402
BCLllA-1918 + GCCGUGGGACCGGGAAGGAC 20 2403
BCLllA-1919 + ACCGGGAAGGACGGGAGACG 20 2404
BCLllA-1920 + GGAAGGACGGGAGACGCGGC 20 2405
BCLllA-1921 + GGCACUGCCGCCUUUUGUUC 20 2406
BCLllA-1922 + CCGCCUUUUGUUCCGGCCAG 20 2407
BCLllA-1923 + CCUU UUGUUCCGGCCAGAGG 20 2408
BCLllA-1924 + CUUUUGUUCCGGCCAGAGGU 20 2409
BCLllA-1925 + UGUCCCGCUGCCUUUUGUGC 20 2410
BCLllA-1926 + GCCGCCGCCGCCGCCGCCGA 20 2411
BCLllA-1927 + CCGCCGCCGCCGCCGCCGAA 20 2412
BCLllA-1928 + CGCCGCCGCCGCCGAAGGGC 20 2413
BCLllA-1929 + GCCGCCGAAGGGCAGGAGCU 20 2414
BCLllA-1930 + CCGCCGAAGGGCAGGAGCUA 20 2415
BCLllA-1931 + CGAAGGGCAGGAGCUAGGGC 20 2416
BCLllA-1932 + GAAGGGCAGGAGCUAGGGCC 20 2417
BCLllA-1933 + AAGGGCAGGAGCUAGGGCCG 20 2418 BCLllA-1934 + AGGGCAGGAGCUAGGGCCGG 20 2419
BCLllA-1935 + GCAGGAGCUAGGGCCGGGGG 20 2420
BCLllA-1936 + GGAGCUAGGGCCGGGGGAGG 20 2421
BCLllA-1937 + GCUAGGGCCGGGGGAGGAGG 20 2422
BCLllA-1938 + GGGCCGGGGGAGGAGGCGGC 20 2423
BCLllA-1939 + GGCCGGGGGAGGAGGCGGCC 20 2424
BCLllA-1940 + GCCGGGGGAGGAGGCGGCCG 20 2425
BCLllA-1941 + CCGGGGGAGGAGGCGGCCGG 20 2426
BCLllA-1942 + AGGAGGCGGCCGGGGGCACG 20 2427
BCLllA-1943 + GGAGGCGGCCGGGGGCACGC 20 2428
BCLllA-1944 + CGGCCGGGGGCACGCGGGAG 20 2429
BCLllA-1945 + GGCCGGGGGCACGCGGGAGA 20 2430
BCLllA-1946 + CGGGGGCACGCGGGAGAGGG 20 2431
BCLllA-1947 + GGGGGCACGCGGGAGAGGGA 20 2432
BCLllA-1948 + GGCACGCGGGAGAGGGAGGG 20 2433
BCLllA-1949 + GCACGCGGGAGAGGGAGGGA 20 2434
BCLllA-1950 + GGAGAGGGAGGGAGGGAGCC 20 2435
BCLllA-1951 + GAGCCCGGACUGCUGCCUCC 20 2436
BCLllA-1952 + AGCCCGGACUGCUGCCUCCU 20 2437
BCLllA-1953 + CCCUCCCGACCGAACCUCAG 20 2438
BCLllA-1954 + ACCGAACCUCAGAGGCAGCA 20 2439
BCLllA-1955 + AGAGGCAGCAAGGAGAAGAC 20 2440
BCLllA-1956 + AAAAUAAAAUAAAUAAAACA 20 2441
BCLllA-1957 - UCUCCU UGCUGCCUCUG 17 2442
BCLllA-1958 - UUGCUGCCUCUGAGGUU 17 2443
BCLllA-1959 - UGCCUCUGAGGUUCGGU 17 2444
BCLllA-1960 - GCCUCUGAGGUUCGGUC 17 2445
BCLllA-1961 - UCUGAGGUUCGGUCGGG 17 2446
BCLllA-1962 - CUGAGGUUCGGUCGGGA 17 2447
BCLllA-1963 - UGAGGUUCGGUCGGGAG 17 2448
BCLllA-1964 - GGU UCGGUCGGGAGGGG 17 2449
BCLllA-1965 - GUUCGGUCGGGAGGGGA 17 2450
BCLllA-1966 - UCGGGAGGGGAGGGCAG 17 2451
BCLllA-1967 - GAGGGCAGCGGCAACCC 17 2452
BCLllA-1968 - GGCAGCGGCAACCCAGG 17 2453
BCLllA-1969 - CCCAGGAGGCAGCAGUC 17 2454
BCLllA-1970 - CCAGGAGGCAGCAGUCC 17 2455
BCLllA-1971 - CCUCUCCCGCGUGCCCC 17 2456
BCLllA-1972 - CCGGCCGCCUCCUCCCC 17 2457
BCLllA-1973 - CCCUAGCUCCUGCCCUU 17 2458
BCLllA-1974 - UAGCUCCUGCCCUUCGG 17 2459
BCLllA-1975 - CUCCUGCCCUUCGGCGG 17 2460 BCLllA-1976 - CUGCCCUUCGGCGGCGG 17 2461
BCLllA-1977 - CCCUUCGGCGGCGGCGG 17 2462
BCLllA-1978 - UUCGGCGGCGGCGGCGG 17 2463
BCLllA-1979 - GGCGGCGGCGGCGGCGG 17 2464
BCLllA-1980 - CGGCGGCGGCGGCGGCG 17 2465
BCLllA-1981 - GGCGGCGGCGGCGGCGC 17 2466
BCLllA-1982 - GGCGGCGGCGGCGCGGG 17 2467
BCLllA-1983 - GCGGCGGCGGCGCGGGA 17 2468
BCLllA-1984 - GCGGGAGGGCAAGCGCG 17 2469
BCLllA-1985 - GGGCAAGCGCGAGGAGC 17 2470
BCLllA-1986 - CGAGGAGCCGGCACAAA 17 2471
BCLllA-1987 - GCCGGCACAAAAGGCAG 17 2472
BCLllA-1988 - CCGGCACAAAAGGCAGC 17 2473
BCLllA-1989 - GGACAAACACCCACCUC 17 2474
BCLllA-1990 - AAACACCCACCUCUGGC 17 2475
BCLllA-1991 - CCUCUGGCCGGAACAAA 17 2476
BCLllA-1992 - C U GG CCG G A ACAAAAG G 17 2477
BCLllA-1993 - A C A A A AG GCGGCAGUGC 17 2478
BCLllA-1994 - GCGUCUCCCGUCCUUCC 17 2479
BCLllA-1995 - CGUCCUUCCCGGUCCCA 17 2480
BCLllA-1996 - GGCUCUCCCCGUCGCCG 17 2481
BCLllA-1997 - CCCCUCUCCCGACUCCG 17 2482
BCLllA-1998 - CCCGACUCCGCGGACUC 17 2483
BCLllA-1999 - CGCGGACUCAGGAGCGC 17 2484
BCLllA-2000 - GCGGACUCAGGAGCGCC 17 2485
BCLllA-2001 - CGGACUCAGGAGCGCCG 17 2486
BCLllA-2002 - GGACUCAGGAGCGCCGG 17 2487
BCLllA-2003 - CCACUUUCUCACUAUUG 17 2488
BCLllA-2004 - CACUUUCUCACUAUUGU 17 2489
BCLllA-2005 - ACUUUCUCACUAUUGUG 17 2490
BCLllA-2006 - CUUGACCGUGAGCGCGC 17 2491
BCLllA-2007 - CUCACCUCUUUUCUCCC 17 2492
BCLllA-2008 - UCACCUCUUUUCUCCCC 17 2493
BCLllA-2009 - ACCCCCCCAUUUUCUUA 17 2494
BCLllA-2010 - CAUUUUCUUACGGUGAG 17 2495
BCLllA-2011 - AUUUUCUUACGGUGAGU 17 2496
BCLllA-2012 - CACCAGCUCCCACCCCC 17 2497
BCLllA-2013 - U CAU U AU U U UG CAAAAC 17 2498
BCLllA-2014 - UUAUUUUGCAAAACUGG 17 2499
BCLllA-2015 - UAUUUUGCAAAACUGGC 17 2500
BCLllA-2016 - AUUUUGCAAAACUGGCG 17 2501
BCLllA-2017 - UUGCAAAACUGGCGGGG 17 2502 BCLllA-2018 - UGCAAAACUGGCGGGGC 17 2503
BCLllA-2019 - GCAAAACUGGCGGGGCG 17 2504
BCLllA-2020 - CAAAACUGGCGGGGCGG 17 2505
BCLllA-2021 - AAAACUGGCGGGGCGGG 17 2506
BCLllA-2022 - AAACUGGCGGGGCGGGG 17 2507
BCLllA-2023 - AACUGGCGGGGCGGGGG 17 2508
BCLllA-2024 - GCGGGGCGGGGGGGGAG 17 2509
BCLllA-2025 - CGAAAAGAGAAAUAAAG 17 2510
BCLllA-2026 - A A AG AG A A A U A A AG CG G 17 2511
BCLllA-2027 - GAAAUAAAGCGGCGGAA 17 2512
BCLllA-2028 - AUAAAGCGGCGGAAAGG 17 2513
BCLllA-2029 - GGCGGAAAGGAGGAAAG 17 2514
BCLllA-2030 - GGAAAGGAGGAAAGAGG 17 2515
BCLllA-2031 - AAU U AAAU AAAAU U AAA 17 2516
BCLllA-2032 - U C U C A A A AG U G C A U AC A 17 2517
BCLllA-2033 - AAGUGCAUACACGGCAA 17 2518
BCLllA-2034 - ACGGCAAUGGUUCCAGA 17 2519
BCLllA-2035 - CGGCAAUGGUUCCAGAU 17 2520
BCLllA-2036 - UGGUUCCAGAUGGGAUG 17 2521
BCLllA-2037 - GGUUCCAGAUGGGAUGA 17 2522
BCLllA-2038 - UCU UUUACCUCGACUCU 17 2523
BCLllA-2039 - U UUACCUCGACUCUCGG 17 2524
BCLllA-2040 - AUUAUUAUUACUAUUAU 17 2525
BCLllA-2041 - UUAUUAUUACUAUUAUU 17 2526
BCLllA-2042 + UAAUCACGAGAGCGCGC 17 2527
BCLllA-2043 + G ACU AG AAG CAAAAG CG 17 2528
BCLllA-2044 + ACU AG AAG CAAAAG CG A 17 2529
BCLllA-2045 + CUAGAAGCAAAAGCGAG 17 2530
BCLllA-2046 + UAGAAGCAAAAGCGAGG 17 2531
BCLllA-2047 + AAAAGCGAGGGGGAGAG 17 2532
BCLllA-2048 + AAAGCGAGGGGGAGAGA 17 2533
BCLllA-2049 + AAGCGAGGGGGAGAGAG 17 2534
BCLllA-2050 + AAAACCU CCG AG AG U CG 17 2535
BCLllA-2051 + CG AGG U AAAAG AG AU AA 17 2536
BCLllA-2052 + G AG G U A A A AG AG A U AAA 17 2537
BCLllA-2053 + AGG U AAAAG AG AU AAAG 17 2538
BCLllA-2054 + GGU AAAAG AGAUAAAGG 17 2539
BCLllA-2055 + AAAACCCUCAUCCCAUC 17 2540
BCLllA-2056 + UAUUUCUCUUUUCGAAA 17 2541
BCLllA-2057 + AAUAAUGAACAAUGCUA 17 2542
BCLllA-2058 + CAACUCACAUGCAAACC 17 2543
BCLllA-2059 + AAC U CAC AU G CAAACCU 17 2544 BCLllA-2060 + ACUCACAUGCAAACCUG 17 2545
BCLllA-2061 + CUCACAUGCAAACCUGG 17 2546
BCLllA-2062 + ACAUGCAAACCUGGGGG 17 2547
BCLllA-2063 + CAUGCAAACCUGGGGGU 17 2548
BCLllA-2064 + AACCUGGGGGUGGGAGC 17 2549
BCLllA-2065 + CUGGGGGUGGGAGCUGG 17 2550
BCLllA-2066 + UGGGGGUGGGAGCUGGU 17 2551
BCLllA-2067 + GGGGGUGGGAGCUGGUG 17 2552
BCLllA-2068 + UGGGAGCUGGUGGGGAA 17 2553
BCLllA-2069 + GGGAGCUGGUGGGGAAA 17 2554
BCLllA-2070 + AGCUGGUGGGGAAAGGG 17 2555
BCLllA-2071 + CAC U CACCG U AAGAAAA 17 2556
BCLllA-2072 + ACUCACCGUAAGAAAAU 17 2557
BCLllA-2073 + CUCACCGUAAGAAAAUG 17 2558
BCLllA-2074 + UCACCGUAAGAAAAUGG 17 2559
BCLllA-2075 + CACCG UAAGAAAAUGGG 17 2560
BCLllA-2076 + ACCGUAAGAAAAUGGGG 17 2561
BCLllA-2077 + UAAGAAAAUGGGGGGGU 17 2562
BCLllA-2078 + AAGAAAAUGGGGGGGUA 17 2563
BCLllA-2079 + AAAAUGGGGGGGUAGGG 17 2564
BCLllA-2080 + AAAUGGGGGGGUAGGGA 17 2565
BCLllA-2081 + GUCUAAAAAACGAUUCC 17 2566
BCLllA-2082 + U CU AAAAAACG AU U CCC 17 2567
BCLllA-2083 + CUAAAAAACGAUUCCCG 17 2568
BCLllA-2084 + AUUCCCGGGGAGAAAAG 17 2569
BCLllA-2085 + GAGAAAAGAGGUGAGAC 17 2570
BCLllA-2086 + GAGGUGAGACUGGCU UU 17 2571
BCLllA-2087 + GGACACCAGCGCGCUCA 17 2572
BCLllA-2088 + CACGGU CA AG U G U G CAG 17 2573
BCLllA-2089 + ACGGUCAAGUGUGCAGC 17 2574
BCLllA-2090 + GUCAAGUGUGCAGCGGG 17 2575
BCLllA-2091 + CCACAAUAGUGAGAAAG 17 2576
BCLllA-2092 + GUGAGAAAGUGGCACUG 17 2577
BCLllA-2093 + AAAGUGGCACUGUGGAA 17 2578
BCLllA-2094 + AAGUGGCACUGUGGAAA 17 2579
BCLllA-2095 + AGUGGCACUGUGGAAAG 17 2580
BCLllA-2096 + CUGUGGAAAGGGGCCCC 17 2581
BCLllA-2097 + CGGCGCUCCUGAGUCCG 17 2582
BCLllA-2098 + UCCUGAGUCCGCGGAGU 17 2583
BCLllA-2099 + CCUGAGUCCGCGGAGUC 17 2584
BCLllA-2100 + GUCCGCGGAGUCGGGAG 17 2585
BCLllA-2101 + UCCGCGGAGUCGGGAGA 17 2586 BCLllA-2102 + CCGCGGAGUCGGGAGAG 17 2587
BCLllA-2103 + AGUCGGGAGAGGGGCCG 17 2588
BCLllA-2104 + GAGAGGGGCCGCGGCGA 17 2589
BCLllA-2105 + AGAGGGGCCGCGGCGAC 17 2590
BCLllA-2106 + GAGGGGCCGCGGCGACG 17 2591
BCLllA-2107 + GGCGACGGGGAGAGCCG 17 2592
BCLllA-2108 + GCGACGGGGAGAGCCGU 17 2593
BCLllA-2109 + GGGGAGAGCCGUGGGAC 17 2594
BCLllA-2110 + GGGAGAGCCGUGGGACC 17 2595
BCLllA-2111 + GAGCCGUGGGACCGGGA 17 2596
BCLllA-2112 + CGUGGGACCGGGAAGGA 17 2597
BCLllA-2113 + GUGGGACCGGGAAGGAC 17 2598
BCLllA-2114 + GGGAAGGACGGGAGACG 17 2599
BCLllA-2115 + AGGACGGGAGACGCGGC 17 2600
BCLllA-2116 + ACUGCCGCCUUUUGUUC 17 2601
BCLllA-2117 + CCUU UUGUUCCGGCCAG 17 2602
BCLllA-2118 + UUUGUUCCGGCCAGAGG 17 2603
BCLllA-2119 + UUGUUCCGGCCAGAGGU 17 2604
BCLllA-2120 + CCCGCUGCCUUUUGUGC 17 2605
BCLllA-2121 + GCCGCCGCCGCCGCCGA 17 2606
BCLllA-2122 + CCGCCGCCGCCGCCGAA 17 2607
BCLllA-2123 + CGCCGCCGCCGAAGGGC 17 2608
BCLllA-2124 + GCCGAAGGGCAGGAGCU 17 2609
BCLllA-2125 + CCGAAGGGCAGGAGCUA 17 2610
BCLllA-2126 + AGGGCAGGAGCUAGGGC 17 2611
BCLllA-2127 + GGGCAGGAGCUAGGGCC 17 2612
BCLllA-2128 + GGCAGGAGCUAGGGCCG 17 2613
BCLllA-2129 + GCAGGAGCUAGGGCCGG 17 2614
BCLllA-2130 + GGAGCUAGGGCCGGGGG 17 2615
BCLllA-2131 + GCUAGGGCCGGGGGAGG 17 2616
BCLllA-2132 + AGGGCCGGGGGAGGAGG 17 2617
BCLllA-2133 + CCGGGGGAGGAGGCGGC 17 2618
BCLllA-2134 + CGGGGGAGGAGGCGGCC 17 2619
BCLllA-2135 + GGGGGAGGAGGCGGCCG 17 2620
BCLllA-2136 + GGGGAGGAGGCGGCCGG 17 2621
BCLllA-2137 + AGGCGGCCGGGGGCACG 17 2622
BCLllA-2138 + GGCGGCCGGGGGCACGC 17 2623
BCLllA-2139 + CCGGGGGCACGCGGGAG 17 2624
BCLllA-2140 + CGGGGGCACGCGGGAGA 17 2625
BCLllA-2141 + GGGCACGCGGGAGAGGG 17 2626
BCLllA-2142 + GGCACGCGGGAGAGGGA 17 2627
BCLllA-2143 + ACGCGGGAGAGGGAGGG 17 2628 BCLllA-2144 + CGCGGGAGAGGGAGGGA 17 2629
BCLllA-2145 + GAGGGAGGGAGGGAGCC 17 2630
BCLllA-2146 + CCCGGACUGCUGCCUCC 17 2631
BCLllA-2147 + CCGGACUGCUGCCUCCU 17 2632
BCLllA-2148 + UCCCGACCGAACCUCAG 17 2633
BCLllA-2149 + G AACCU CAG AGG CAG CA 17 2634
BCLllA-2150 + G G CAG CAAG G AG AAG AC 17 2635
BCLllA-2151 + AUAAAAUAAAUAAAACA 17 2636
Table 3B provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the BCLllA gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 3B
Figure imgf000182_0001
BCLllA-2172 - GGAGCCGGCACAAAAGGCAG 20 2657
BCLllA-2173 - GGACAAACACCCACCUCUGG 20 2658
BCLllA-2174 - GACAAACACCCACCUCUGGC 20 2659
BCLllA-2175 - GCGGCCCCUCUCCCGACUCC 20 2660
BCLllA-2176 - CUCUCCCGACUCCGCGGACU 20 2661
BCLllA-2177 - UCUCCCGACUCCGCGGACUC 20 2662
BCLllA-2178 - ACUCCGCGGACUCAGGAGCG 20 2663
BCLllA-2179 - CUCCGCGGACUCAGGAGCGC 20 2664
BCLllA-2180 - UCCGCGGACUCAGGAGCGCC 20 2665
BCLllA-2181 - AGUGCCACUUUCUCACUAUU 20 2666
BCLllA-2182 - GUGCCACUUUCUCACUAUUG 20 2667
BCLllA-2183 - UGCCACUUUCUCACUAUUGU 20 2668
BCLllA-2184 - CUCCCGCUGCACACUUGACC 20 2669
BCLllA-2185 - CAGUCUCACCUCUUUUCUCC 20 2670
BCLllA-2186 - AGUCUCACCUCUUUUCUCCC 20 2671
BCLllA-2187 - GUCUCACCUCUUUUCUCCCC 20 2672
BCLllA-2188 - UACCCCCCCAUUUUCUUACG 20 2673
BCLllA-2189 - CCCCCAUUUUCUUACGGUGA 20 2674
BCLllA-2190 - CCCCAUUUUCUUACGGUGAG 20 2675
BCLllA-2191 - CCCAUUUUCUUACGGUGAGU 20 2676
BCLllA-2192 - UCCCACCCCCAGGUUUGCAU 20 2677
BCLllA-2193 - UUCAUUAUUUUGCAAAACUG 20 2678
BCLllA-2194 - UCAUUAUUUUGCAAAACUGG 20 2679
BCLllA-2195 - UAUUUUGCAAAACUGGCGGG 20 2680
BCLllA-2196 - AUUUUGCAAAACUGGCGGGG 20 2681
BCLllA-2197 - UUUUGCAAAACUGGCGGGGC 20 2682
BCLllA-2198 - UUUGCAAAACUGGCGGGGCG 20 2683
BCLllA-2199 - UUGCAAAACUGGCGGGGCGG 20 2684
BCLllA-2200 - UGCAAAACUGGCGGGGCGGG 20 2685
BCLllA-2201 - GCAAAACUGGCGGGGCGGGG 20 2686
BCLllA-2202 - CAAAACUGGCGGGGCGGGGG 20 2687
BCLllA-2203 - ACUGGCGGGGCGGGGGGGGA 20 2688
BCLllA-2204 - CUGGCGGGGCGGGGGGGGAG 20 2689
BCLllA-2205 - UGGAAUCAUUGCAUUCCUUU 20 2690
BCLllA-2206 - UCAUUGCAUUCCUUUUCGAA 20 2691
BCLllA-2207 - AUUGCAUUCCUUUUCGAAAA 20 2692
BCLllA-2208 - UCGAAAAGAGAAAUAAAGCG 20 2693
BCLllA-2209 - CGAAAAGAGAAAUAAAGCGG 20 2694
BCLllA-2210 - AAGAGAAAUAAAGCGGCGGA 20 2695
BCLllA-2211 - AGAGAAAUAAAGCGGCGGAA 20 2696
BCLllA-2212 - AGAAAUAAAGCGGCGGAAAG 20 2697
BCLllA-2213 - GAAAUAAAGCGGCGGAAAGG 20 2698 BCLllA-2214 - UAAAGCGGCGGAAAGGAGGA 20 2699
BCLllA-2215 - AAGCGGCGG A A AG G AG G AAA 20 2700
BCLllA-2216 - AGCGGCGGAAAGGAGGAAAG 20 2701
BCLllA-2217 - CGGCGGAAAGGAGGAAAGAG 20 2702
BCLllA-2218 - GGCGGAAAGGAGGAAAGAGG 20 2703
BCLllA-2219 - AUACACGGCAAUGGUUCCAG 20 2704
BCLllA-2220 - UACACGGCAAUGGUUCCAGA 20 2705
BCLllA-2221 - CGGCAAUGGUUCCAGAUGGG 20 2706
BCLllA-2222 - GCAAUGGUUCCAGAUGGGAU 20 2707
BCLllA-2223 - UAUCUCUUUUACCUCGACUC 20 2708
BCLllA-2224 - AUCUCUUUUACCUCGACUCU 20 2709
BCLllA-2225 - GACUCUCGGAGGUUUUUCUC 20 2710
BCLllA-2226 - AAUAAUUAUUAUUACUAUUA 20 2711
BCLllA-2227 - ACUAUUAUUGGGUUACUUAC 20 2712
BCLllA-2228 - UAUUAUUGGGUUACUUACGC 20 2713
BCLllA-2229 - UCUUCUCCUUGCUGCCU 17 2714
BCLllA-2230 - CUGCCUCUGAGGUUCGG 17 2715
BCLllA-2231 - UGCCUCUGAGGUUCGGU 17 2716
BCLllA-2232 - GCCUCUGAGGUUCGGUC 17 2717
BCLllA-2233 - CUCUGAGGUUCGGUCGG 17 2718
BCLllA-2234 - UCUGAGGUUCGGUCGGG 17 2719
BCLllA-2235 - CUGAGGUUCGGUCGGGA 17 2720
BCLllA-2236 - UGAGGUUCGGUCGGGAG 17 2721
BCLllA-2237 - AGGUUCGGUCGGGAGGG 17 2722
BCLllA-2238 - GGAGGGCAGCGGCAACC 17 2723
BCLllA-2239 - GAGGGCAGCGGCAACCC 17 2724
BCLllA-2240 - ACCCAGGAGGCAGCAGU 17 2725
BCLllA-2241 - GCGGCGGCGGCGGCGGC 17 2726
BCLllA-2242 - CGGCGGCGGCGGCGGCG 17 2727
BCLllA-2243 - GGCGGCGGCGGCGGCGC 17 2728
BCLllA-2244 - CGGCGGCGGCGGCGCGG 17 2729
BCLllA-2245 - GGCGCGGGAGGGCAAGC 17 2730
BCLllA-2246 - CGCGGGAGGGCAAGCGC 17 2731
BCLllA-2247 - GCGGGAGGGCAAGCGCG 17 2732
BCLllA-2248 - AG CCGG CAC AAAAG G C A 17 2733
BCLllA-2249 - GCCGGCACAAAAGGCAG 17 2734
BCLllA-2250 - CAAACACCCACCUCUGG 17 2735
BCLllA-2251 - AAACACCCACCUCUGGC 17 2736
BCLllA-2252 - GCCCCUCUCCCGACUCC 17 2737
BCLllA-2253 - UCCCGACUCCGCGGACU 17 2738
BCLllA-2254 - CCCGACUCCGCGGACUC 17 2739
BCLllA-2255 - CCGCGGACUCAGGAGCG 17 2740 BCLllA-2256 - CGCGGACUCAGGAGCGC 17 2741
BCLllA-2257 - GCGGACUCAGGAGCGCC 17 2742
BCLllA-2258 - GCCACUUUCUCACUAUU 17 2743
BCLllA-2259 - CCACUUUCUCACUAUUG 17 2744
BCLllA-2260 - CACUUUCUCACUAUUGU 17 2745
BCLllA-2261 - CCGCUGCACACUUGACC 17 2746
BCLllA-2262 - UCUCACCUCUUUUCUCC 17 2747
BCLllA-2263 - CUCACCUCUUUUCUCCC 17 2748
BCLllA-2264 - UCACCUCUUUUCUCCCC 17 2749
BCLllA-2265 - CCCCCCAUUUUCUUACG 17 2750
BCLllA-2266 - CCAUUUUCUUACGGUGA 17 2751
BCLllA-2267 - CAUUUUCUUACGGUGAG 17 2752
BCLllA-2268 - AUUUUCUUACGGUGAGU 17 2753
BCLllA-2269 - CACCCCCAGGUUUGCAU 17 2754
BCLllA-2270 - AUUAUUUUGCAAAACUG 17 2755
BCLllA-2271 - UUAUUUUGCAAAACUGG 17 2756
BCLllA-2272 - UUUGCAAAACUGGCGGG 17 2757
BCLllA-2273 - UUGCAAAACUGGCGGGG 17 2758
BCLllA-2274 - UGCAAAACUGGCGGGGC 17 2759
BCLllA-2275 - GCAAAACUGGCGGGGCG 17 2760
BCLllA-2276 - CAAAACUGGCGGGGCGG 17 2761
BCLllA-2277 - AAAACUGGCGGGGCGGG 17 2762
BCLllA-2278 - AAACUGGCGGGGCGGGG 17 2763
BCLllA-2279 - AACUGGCGGGGCGGGGG 17 2764
BCLllA-2280 - GGCGGGGCGGGGGGGGA 17 2765
BCLllA-2281 - GCGGGGCGGGGGGGGAG 17 2766
BCLllA-2282 - AAUCAUUGCAUUCCUUU 17 2767
BCLllA-2283 - UUGCAUUCCUUUUCGAA 17 2768
BCLllA-2284 - GCAUUCCUUUU CGAAAA 17 2769
BCLllA-2285 - AAAAGAGAAAUAAAGCG 17 2770
BCLllA-2286 - A A AG AG A A A U A A AG CG G 17 2771
BCLllA-2287 - AGAAAUAAAGCGGCGGA 17 2772
BCLllA-2288 - GAAAUAAAGCGGCGGAA 17 2773
BCLllA-2289 - A A U A A AG CG G CG G A A AG 17 2774
BCLllA-2290 - AUAAAGCGGCGGAAAGG 17 2775
BCLllA-2291 - AGCGGCGGAAAGGAGGA 17 2776
BCLllA-2292 - CGGCGGAAAGGAGGAAA 17 2777
BCLllA-2293 - GGCGGAAAGGAGGAAAG 17 2778
BCLllA-2294 - CGGAAAGGAGGAAAGAG 17 2779
BCLllA-2295 - GGAAAGGAGGAAAGAGG 17 2780
BCLllA-2296 - CACGGCAAUGGUUCCAG 17 2781
BCLllA-2297 - ACGGCAAUGGUUCCAGA 17 2782 BCLllA-2298 - CAAUGGUUCCAGAUGGG 17 2783
BCLllA-2299 - AUGGUUCCAGAUGGGAU 17 2784
BCLllA-2300 - CUCUUUUACCUCGACUC 17 2785
BCLllA-2301 - UCU UUUACCUCGACUCU 17 2786
BCLllA-2302 - UCUCGGAGGU UUUUCUC 17 2787
BCLllA-2303 - AAUUAUUAUUACUAUUA 17 2788
BCLllA-2304 - AUUAUUGGGUUACU UAC 17 2789
BCLllA-2305 - UAUUGGGUUACUUACGC 17 2790
BCLllA-2306 + CG AACCU CAG AGG CAG CAAG 20 2791
BCLllA-2307 + ACCGAACCUCAGAGGCAGCA 20 2792
BCLllA-2308 + GACCGAACCUCAGAGGCAGC 20 2793
BCLllA-2309 + CUCCCCUCCCGACCGAACCU 20 2794
BCLllA-2310 + CCGCUGCCCUCCCCUCCCGA 20 2795
BCLllA-2311 + GGAGCCCGGACUGCUGCCUC 20 2796
BCLllA-2312 + GGGAGAGGGAGGGAGGGAGC 20 2797
BCLllA-2313 + GCACGCGGGAGAGGGAGGGA 20 2798
BCLllA-2314 + GGCACGCGGGAGAGGGAGGG 20 2799
BCLllA-2315 + GGGCACGCGGGAGAGGGAGG 20 2800
BCLllA-2316 + GGGGGCACGCGGGAGAGGGA 20 2801
BCLllA-2317 + CGGGGGCACGCGGGAGAGGG 20 2802
BCLllA-2318 + CCGGGGGCACGCGGGAGAGG 20 2803
BCLllA-2319 + GGCCGGGGGCACGCGGGAGA 20 2804
BCLllA-2320 + CGGCCGGGGGCACGCGGGAG 20 2805
BCLllA-2321 + GCGGCCGGGGGCACGCGGGA 20 2806
BCLllA-2322 + AGGCGGCCGGGGGCACGCGG 20 2807
BCLllA-2323 + GGAGGCGGCCGGGGGCACGC 20 2808
BCLllA-2324 + AGGAGGCGGCCGGGGGCACG 20 2809
BCLllA-2325 + GAGGAGGCGGCCGGGGGCAC 20 2810
BCLllA-2326 + GGCCGGGGGAGGAGGCGGCC 20 2811
BCLllA-2327 + GGGCCGGGGGAGGAGGCGGC 20 2812
BCLllA-2328 + AGGGCCGGGGGAGGAGGCGG 20 2813
BCLllA-2329 + GCAGGAGCUAGGGCCGGGGG 20 2814
BCLllA-2330 + GGCAGGAGCUAGGGCCGGGG 20 2815
BCLllA-2331 + AGGGCAGGAGCUAGGGCCGG 20 2816
BCLllA-2332 + AAGGGCAGGAGCUAGGGCCG 20 2817
BCLllA-2333 + GAAGGGCAGGAGCUAGGGCC 20 2818
BCLllA-2334 + CGAAGGGCAGGAGCUAGGGC 20 2819
BCLllA-2335 + CCGAAGGGCAGGAGCUAGGG 20 2820
BCLllA-2336 + CGCCGCCGAAGGGCAGGAGC 20 2821
BCLllA-2337 + CGCCGCCGCCGCCGAAGGGC 20 2822
BCLllA-2338 + CCGCCGCCGCCGCCGAAGGG 20 2823
BCLllA-2339 + CGCCGCCGCCGCCGCCGCCG 20 2824 BCLllA-2340 + CGCCGCCGCCGCCGCCGCCG 20 2825
BCLllA-2341 + GCCUUUUGUUCCGGCCAGAG 20 2826
BCLllA-2342 + CUGCCGCCUUU UGUUCCGGC 20 2827
BCLllA-2343 + GCCGUGGGACCGGGAAGGAC 20 2828
BCLllA-2344 + AGCCGUGGGACCGGGAAGGA 20 2829
BCLllA-2345 + GAGCCGUGGGACCGGGAAGG 20 2830
BCLllA-2346 + GGGAGAGCCGUGGGACCGGG 20 2831
BCLllA-2347 + ACGGGGAGAGCCGUGGGACC 20 2832
BCLllA-2348 + GACGGGGAGAGCCGUGGGAC 20 2833
BCLllA-2349 + CGACGGGGAGAGCCGUGGGA 20 2834
BCLllA-2350 + CGCGGCGACGGGGAGAGCCG 20 2835
BCLllA-2351 + CCGCGGCGACGGGGAGAGCC 20 2836
BCLllA-2352 + AGAGGGGCCGCGGCGACGGG 20 2837
BCLllA-2353 + GGAGAGGGGCCGCGGCGACG 20 2838
BCLllA-2354 + GGGAGAGGGGCCGCGGCGAC 20 2839
BCLllA-2355 + CGGGAGAGGGGCCGCGGCGA 20 2840
BCLllA-2356 + UCGGGAGAGGGGCCGCGGCG 20 2841
BCLllA-2357 + UGAGUCCGCGGAGUCGGGAG 20 2842
BCLllA-2358 + CUGAGUCCGCGGAGUCGGGA 20 2843
BCLllA-2359 + UCCUGAGUCCGCGGAGUCGG 20 2844
BCLllA-2360 + GCUCCUGAGUCCGCGGAGUC 20 2845
BCLllA-2361 + CGCUCCUGAGUCCGCGGAGU 20 2846
BCLllA-2362 + GCGCUCCUGAGUCCGCGGAG 20 2847
BCLllA-2363 + CCCCGGCGCUCCUGAGUCCG 20 2848
BCLllA-2364 + CCCCCGGCGCUCCUGAGUCC 20 2849
BCLllA-2365 + GAAAGGGGCCCCCGGCGCUC 20 2850
BCLllA-2366 + GAGAAAGUGGCACUGUGGAA 20 2851
BCLllA-2367 + UGAGAAAGUGGCACUGUGGA 20 2852
BCLllA-2368 + AUAGUGAGAAAGUGGCACUG 20 2853
BCLllA-2369 + AAUAGUGAGAAAGUGGCACU 20 2854
BCLllA-2370 + GUAGUCAUCCCCACAAUAGU 20 2855
BCLllA-2371 + AAGUAGUCAUCCCCACAAUA 20 2856
BCLllA-2372 + ACGGUCAAGUGUGCAGCGGG 20 2857
BCLllA-2373 + CACGGUCAAGUGUGCAGCGG 20 2858
BCLllA-2374 + CUCACGGUCAAGUGUGCAGC 20 2859
BCLllA-2375 + GCUCACGGUCAAGUGUGCAG 20 2860
BCLllA-2376 + CGCUCACGGUCAAGUGUGCA 20 2861
BCLllA-2377 + AAAAGAGGUGAGACUGGCUU 20 2862
BCLllA-2378 + GAUUCCCGGGGAGAAAAGAG 20 2863
BCLllA-2379 + AAAACGAUUCCCGGGGAGAA 20 2864
BCLllA-2380 + UCUAAAAAACGAUUCCCGGG 20 2865
BCLllA-2381 + AGUCUAAAAAACGAUUCCCG 20 2866 BCLllA-2382 + AAGUCUAAAAAACGAUUCCC 20 2867
BCLllA-2383 + CAAGUCUAAAAAACGAUUCC 20 2868
BCLllA-2384 + ACAAGUCUAAAAAACGAUUC 20 2869
BCLllA-2385 + AAUGGGGGGGUAGGGAGGGA 20 2870
BCLllA-2386 + AGAAAAUGGGGGGGUAGGGA 20 2871
BCLllA-2387 + AAGAAAAUGGGGGGGUAGGG 20 2872
BCLllA-2388 + UAAGAAAAUGGGGGGGUAGG 20 2873
BCLllA-2389 + CGUAAGAAAAUGGGGGGGUA 20 2874
BCLllA-2390 + CCGUAAGAAAAUGGGGGGGU 20 2875
BCLllA-2391 + ACCGUAAGAAAAUGGGGGGG 20 2876
BCLllA-2392 + CACU CACCG U AAG AAAAUGG 20 2877
BCLllA-2393 + CCACUCACCGUAAGAAAAUG 20 2878
BCLllA-2394 + CCCACU CACCG U AAG AAAAU 20 2879
BCLllA-2395 + U CCCACU CACCG U AAG AAAA 20 2880
BCLllA-2396 + U UCCCACUCACCGUAAGAAA 20 2881
BCLllA-2397 + GGUUGCUUCCCACUCACCGU 20 2882
BCLllA-2398 + GGUGGGAGCUGGUGGGGAAA 20 2883
BCLllA-2399 + GGGUGGGAGCUGGUGGGGAA 20 2884
BCLllA-2400 + GGGGUGGGAGCUGGUGGGGA 20 2885
BCLllA-2401 + CCUGGGGGUGGGAGCUGGUG 20 2886
BCLllA-2402 + ACCUGGGGGUGGGAGCUGGU 20 2887
BCLllA-2403 + AACCUGGGGGUGGGAGCUGG 20 2888
BCLllA-2404 + AAACCUGGGGGUGGGAGCUG 20 2889
BCLllA-2405 + UCACAUGCAAACCUGGGGGU 20 2890
BCLllA-2406 + CUCACAUGCAAACCUGGGGG 20 2891
BCLllA-2407 + ACUCACAUGCAAACCUGGGG 20 2892
BCLllA-2408 + AACAACUCACAUGCAAACCU 20 2893
BCLllA-2409 + GAACAACUCACAUGCAAACC 20 2894
BCLllA-2410 + CGAACAACUCACAUGCAAAC 20 2895
BCLllA-2411 + UAAUGAACAAUGCUAAGGUU 20 2896
BCLllA-2412 + CCCGCCAGUUUUGCAAAAUA 20 2897
BCLllA-2413 + CUUUAUUUCUCUUUUCGAAA 20 2898
BCLllA-2414 + GCU UUAUUUCUCUU UUCGAA 20 2899
BCLllA-2415 + CCGCCGCUUUAUUUCUCUUU 20 2900
BCLllA-2416 + CCAU UGCCGUGUAUGCACUU 20 2901
BCLllA-2417 + GAAAAAACCCUCAUCCCAUC 20 2902
BCLllA-2418 + GGAAAAAACCCUCAUCCCAU 20 2903
BCLllA-2419 + CG AGG U AAAAG AG AU AAAGG 20 2904
BCLllA-2420 + U CG AGG U AAAAG AG AU AAAG 20 2905
BCLllA-2421 + GUCGAGGUAAAAGAGAUAAA 20 2906
BCLllA-2422 + AGUCGAGGUAAAAGAGAUAA 20 2907
BCLllA-2423 + GAGUCGAGGUAAAAGAGAUA 20 2908 BCLllA-2424 + ACCUCCGAGAGUCGAGGUAA 20 2909
BCLllA-2425 + ACGAGAAAAACCUCCGAGAG 20 2910
BCLllA-2426 + UUUUCACGAGAAAAACCUCC 20 2911
BCLllA-2427 + AU U U U U CACG AG AAAAACCU 20 2912
BCLllA-2428 + UGCAUUUUUAAAUUUU UCAC 20 2913
BCLllA-2429 + CAUGCAUUUUUAAAUU UUUC 20 2914
BCLllA-2430 + AGCAAAAGCGAGGGGGAGAG 20 2915
BCLllA-2431 + AAGCAAAAGCGAGGGGGAGA 20 2916
BCLllA-2432 + AGAAGCAAAAGCGAGGGGGA 20 2917
BCLllA-2433 + CUAGAAGCAAAAGCGAGGGG 20 2918
BCLllA-2434 + GACUAGAAGCAAAAGCGAGG 20 2919
BCLllA-2435 + GGACUAGAAGCAAAAGCGAG 20 2920
BCLllA-2436 + AGGACUAGAAGCAAAAGCGA 20 2921
BCLllA-2437 + CAGGACUAGAAGCAAAAGCG 20 2922
BCLllA-2438 + G C AG G AC U AG AAG CAAA AG C 20 2923
BCLllA-2439 + GCGCAGGACUAGAAGCAAAA 20 2924
BCLllA-2440 + AU CACG AG AG CG CG CAGG AC 20 2925
BCLllA-2441 + U UAAUAAUCACGAGAGCGCG 20 2926
BCLllA-2442 + U AAU AAU U AU U AAU AAU CAC 20 2927
BCLllA-2443 + AAUAAUAAUUAUUAAUAAUC 20 2928
BCLllA-2444 + ACCUCAGAGGCAGCAAG 17 2929
BCLllA-2445 + G AACCU CAG AGG CAG CA 17 2930
BCLllA-2446 + CGAACCUCAGAGGCAGC 17 2931
BCLllA-2447 + CCCUCCCGACCGAACCU 17 2932
BCLllA-2448 + CUGCCCUCCCCUCCCGA 17 2933
BCLllA-2449 + GCCCGGACUGCUGCCUC 17 2934
BCLllA-2450 + AGAGGGAGGGAGGGAGC 17 2935
BCLllA-2451 + CGCGGGAGAGGGAGGGA 17 2936
BCLllA-2452 + ACGCGGGAGAGGGAGGG 17 2937
BCLllA-2453 + CACGCGGGAGAGGGAGG 17 2938
BCLllA-2454 + GGCACGCGGGAGAGGGA 17 2939
BCLllA-2455 + GGGCACGCGGGAGAGGG 17 2940
BCLllA-2456 + GGGGCACGCGGGAGAGG 17 2941
BCLllA-2457 + CGGGGGCACGCGGGAGA 17 2942
BCLllA-2458 + CCGGGGGCACGCGGGAG 17 2943
BCLllA-2459 + GCCGGGGGCACGCGGGA 17 2944
BCLllA-2460 + CGGCCGGGGGCACGCGG 17 2945
BCLllA-2461 + GGCGGCCGGGGGCACGC 17 2946
BCLllA-2462 + AGGCGGCCGGGGGCACG 17 2947
BCLllA-2463 + GAGGCGGCCGGGGGCAC 17 2948
BCLllA-2464 + CGGGGGAGGAGGCGGCC 17 2949
BCLllA-2465 + CCGGGGGAGGAGGCGGC 17 2950 BCLllA-2466 + GCCGGGGGAGGAGGCGG 17 2951
BCLllA-2467 + GGAGCUAGGGCCGGGGG 17 2952
BCLllA-2468 + AGGAGCUAGGGCCGGGG 17 2953
BCLllA-2469 + GCAGGAGCUAGGGCCGG 17 2954
BCLllA-2470 + GGCAGGAGCUAGGGCCG 17 2955
BCLllA-2471 + GGGCAGGAGCUAGGGCC 17 2956
BCLllA-2472 + AGGGCAGGAGCUAGGGC 17 2957
BCLllA-2473 + AAGGGCAGGAGCUAGGG 17 2958
BCLllA-2474 + CGCCGAAGGGCAGGAGC 17 2959
BCLllA-2475 + CGCCGCCGCCGAAGGGC 17 2960
BCLllA-2476 + CCGCCGCCGCCGAAGGG 17 2961
BCLllA-2477 + CGCCGCCGCCGCCGCCG 17 2962
BCLllA-2478 + CGCCGCCGCCGCCGCCG 17 2963
BCLllA-2479 + UUUUGUUCCGGCCAGAG 17 2964
BCLllA-2480 + CCGCCUUU UGUUCCGGC 17 2965
BCLllA-2481 + GUGGGACCGGGAAGGAC 17 2966
BCLllA-2482 + CGUGGGACCGGGAAGGA 17 2967
BCLllA-2483 + CCGUGGGACCGGGAAGG 17 2968
BCLllA-2484 + AGAGCCGUGGGACCGGG 17 2969
BCLllA-2485 + GGGAGAGCCGUGGGACC 17 2970
BCLllA-2486 + GGGGAGAGCCGUGGGAC 17 2971
BCLllA-2487 + CGGGGAGAGCCGUGGGA 17 2972
BCLllA-2488 + GGCGACGGGGAGAGCCG 17 2973
BCLllA-2489 + CGGCGACGGGGAGAGCC 17 2974
BCLllA-2490 + GGGGCCGCGGCGACGGG 17 2975
BCLllA-2491 + GAGGGGCCGCGGCGACG 17 2976
BCLllA-2492 + AGAGGGGCCGCGGCGAC 17 2977
BCLllA-2493 + GAGAGGGGCCGCGGCGA 17 2978
BCLllA-2494 + GGAGAGGGGCCGCGGCG 17 2979
BCLllA-2495 + GUCCGCGGAGUCGGGAG 17 2980
BCLllA-2496 + AGUCCGCGGAGUCGGGA 17 2981
BCLllA-2497 + UGAGUCCGCGGAGUCGG 17 2982
BCLllA-2498 + CCUGAGUCCGCGGAGUC 17 2983
BCLllA-2499 + UCCUGAGUCCGCGGAGU 17 2984
BCLllA-2500 + CUCCUGAGUCCGCGGAG 17 2985
BCLllA-2501 + CGGCGCUCCUGAGUCCG 17 2986
BCLllA-2502 + CCGGCGCUCCUGAGUCC 17 2987
BCLllA-2503 + AGGGGCCCCCGGCGCUC 17 2988
BCLllA-2504 + AAAGUGGCACUGUGGAA 17 2989
BCLllA-2505 + GAAAGUGGCACUGUGGA 17 2990
BCLllA-2506 + GUGAGAAAGUGGCACUG 17 2991
BCLllA-2507 + AG U G AG AAAG U G G C AC U 17 2992 BCLllA-2508 + GUCAUCCCCACAAUAGU 17 2993
BCLllA-2509 + UAGUCAUCCCCACAAUA 17 2994
BCLllA-2510 + GUCAAGUGUGCAGCGGG 17 2995
BCLllA-2511 + GGUCAAGUGUGCAGCGG 17 2996
BCLllA-2512 + ACGGUCAAGUGUGCAGC 17 2997
BCLllA-2513 + CACGGU CA AG U G U G CAG 17 2998
BCLllA-2514 + UCACGGUCAAGUGUGCA 17 2999
BCLllA-2515 + AGAGGUGAGACUGGCUU 17 3000
BCLllA-2516 + UCCCGGGGAGAAAAGAG 17 3001
BCLllA-2517 + ACGAUUCCCGGGGAGAA 17 3002
BCLllA-2518 + AAAAAACGAUUCCCGGG 17 3003
BCLllA-2519 + CUAAAAAACGAUUCCCG 17 3004
BCLllA-2520 + U CU AAAAAACG AU U CCC 17 3005
BCLllA-2521 + GUCUAAAAAACGAUUCC 17 3006
BCLllA-2522 + AGUCUAAAAAACGAUUC 17 3007
BCLllA-2523 + GGGGGGGUAGGGAGGGA 17 3008
BCLllA-2524 + AAAUGGGGGGGUAGGGA 17 3009
BCLllA-2525 + AAAAUGGGGGGGUAGGG 17 3010
BCLllA-2526 + GAAAAUGGGGGGGUAGG 17 3011
BCLllA-2527 + AAGAAAAUGGGGGGGUA 17 3012
BCLllA-2528 + UAAGAAAAUGGGGGGGU 17 3013
BCLllA-2529 + GUAAGAAAAUGGGGGGG 17 3014
BCLllA-2530 + UCACCGUAAGAAAAUGG 17 3015
BCLllA-2531 + CUCACCGUAAGAAAAUG 17 3016
BCLllA-2532 + ACUCACCGUAAGAAAAU 17 3017
BCLllA-2533 + CAC U CACCG U AAGAAAA 17 3018
BCLllA-2534 + CCACUCACCGUAAGAAA 17 3019
BCLllA-2535 + UGCUUCCCACUCACCGU 17 3020
BCLllA-2536 + GGGAGCUGGUGGGGAAA 17 3021
BCLllA-2537 + UGGGAGCUGGUGGGGAA 17 3022
BCLllA-2538 + GUGGGAGCUGGUGGGGA 17 3023
BCLllA-2539 + GGGGGUGGGAGCUGGUG 17 3024
BCLllA-2540 + UGGGGGUGGGAGCUGGU 17 3025
BCLllA-2541 + CUGGGGGUGGGAGCUGG 17 3026
BCLllA-2542 + CCUGGGGGUGGGAGCUG 17 3027
BCLllA-2543 + CAUGCAAACCUGGGGGU 17 3028
BCLllA-2544 + ACAUGCAAACCUGGGGG 17 3029
BCLllA-2545 + CACAUGCAAACCUGGGG 17 3030
BCLllA-2546 + AAC U CAC AU G CAAACCU 17 3031
BCLllA-2547 + CAACUCACAUGCAAACC 17 3032
BCLllA-2548 + ACAACUCACAUGCAAAC 17 3033
BCLllA-2549 + UGAACAAUGCUAAGGUU 17 3034 BCLllA-2550 + GCCAGUUUUGCAAAAUA 17 3035
BCLllA-2551 + UAUUUCUCUUUUCGAAA 17 3036
BCLllA-2552 + U UAUUUCUCUUUUCGAA 17 3037
BCLllA-2553 + CCGCUUUAUUUCUCUU U 17 3038
BCLllA-2554 + U UGCCGUGUAUGCACU U 17 3039
BCLllA-2555 + AAAACCCUCAUCCCAUC 17 3040
BCLllA-2556 + AAAAACCCUCAUCCCAU 17 3041
BCLllA-2557 + G G U A A A AG AG A U A A AG G 17 3042
BCLllA-2558 + AGG U AAAAG AG AU AAAG 17 3043
BCLllA-2559 + G AG G U A A A AG AG A U AAA 17 3044
BCLllA-2560 + CG AGG U AAAAG AG AU AA 17 3045
BCLllA-2561 + UCGAGGUAAAAGAGAUA 17 3046
BCLllA-2562 + UCCGAGAGUCGAGGUAA 17 3047
BCLllA-2563 + AGAAAAACCUCCGAGAG 17 3048
BCLllA-2564 + UCACGAGAAAAACCUCC 17 3049
BCLllA-2565 + U U U CACG AG AAAAACCU 17 3050
BCLllA-2566 + AUUUUUAAAUUUUUCAC 17 3051
BCLllA-2567 + GCAUUUUUAAAUUUUUC 17 3052
BCLllA-2568 + AAAAGCGAGGGGGAGAG 17 3053
BCLllA-2569 + CAAAAGCGAGGGGGAGA 17 3054
BCLllA-2570 + AG C A A A AG CGAGGGGGA 17 3055
BCLllA-2571 + G A AG C AAAAG CG AG GG G 17 3056
BCLllA-2572 + UAGAAGCAAAAGCGAGG 17 3057
BCLllA-2573 + CUAGAAGCAAAAGCGAG 17 3058
BCLllA-2574 + ACU AG AAG CAAAAG CG A 17 3059
BCLllA-2575 + G ACU AG AAG CAAAAG CG 17 3060
BCLllA-2576 + GGACUAGAAG CAAAAG C 17 3061
BCLllA-2577 + CAGGACUAGAAG C A A A A 17 3062
BCLllA-2578 + ACGAGAGCGCGCAGGAC 17 3063
BCLllA-2579 + AUAAUCACGAGAGCGCG 17 3064
BCLllA-2580 + U AAU U AU U AAU AAU CAC 17 3065
BCLllA-2581 + AAUAAUUAUUAAUAAUC 17 3066
Table 3C provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the BCLllA gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression. Table 3C
Figure imgf000193_0001
Table 4A provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to first tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: BCL11A- 2607 and BCL11 A-2593, BCL11 A-2607 and BCL11 A-2598, BCL11 A-264 and BCL11 A-2593, BCL11A-2614 and BCL11 A-2598, BCL11A-2589 and BCL11A-2664, BCL11A-2589 and BCLl lA-2666, BCLl lA-2596 and BCLl lA-2664, BCLl lA-2596 and BCLl lA-2666,
BCLl lA-2603 and BCLl lA-2664, of BCLl lA-2603 and BCLl lA-2666.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene. For example, gRNA pairs that target upstream (i.e., 5') of the enhancer region in the BCLllA gene (e.g., 2607 and BCLl lA-2593, BCLl lA-2607 and BCLl lA-2598, BCL11A- 264 and BCLl 1A-2593, or BCLl 1A-2614 and BCLl 1A-2598) can be paired with gRNA pairs that target downstream (i.e., 3') of the enhancer region in the BCLllA gene (e.g., BCLl 1A-2589 and BCLl 1A-2664, BCLl 1A-2589 and BCLl 1 A-2666, BCLl 1A-2596 and BCLl 1A-2664, BCLl lA-2596 and BCLl 1 A-2666, BCLl lA-2603 and BCLl lA-2664, of BCLl lA-2603 and BCLl lA-2666).
Table 4A
Figure imgf000194_0001
Table 4B provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to second tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 4B
Figure imgf000195_0001
Table 4C provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to third tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 4C
Figure imgf000196_0001
BCLllA-2622 + GAUGCUUUUUUCAUCUCGAU 20 3107
BCLllA-2623 + GCACUCAUCCCAGGCGU 17 3108
BCLllA-2624 + GCAUAUUCUGCACUCAUCCC 20 3109
BCLllA-2625 - GCCAGAUGAACUUCCCAUUG 20 3110
BCLllA-2626 - GCCCGUUGGGAGCUCCAGAA 20 3111
BCLllA-2627 + GCUAUGUGUUCCUGU UU 17 3112
BCLllA-2628 + GCUCCAUGUGCAGAACG 17 3113
BCLllA-2629 - GCUCUAAUCCCCACGCC 17 3114
BCLllA-2630 + GCUGGGGUUUGCCU UGCUUG 20 3115
BCLllA-2631 + GCUUUUUUCAUCUCGAU 17 3116
BCLllA-2632 + GGCACUGCCCACAGGUG 17 3117
BCLllA-2633 + GGCACUGCCCACAGGUGAGG 20 3118
BCLllA-2634 - GGCCCGU UGGGAGCUCCAGA 20 3119
BCLllA-2635 + GGGGUUUGCCUUGCUUG 17 3120
BCLllA-2636 + GUAAGAAUGGCUUCAAG 17 3121
BCLllA-2637 + GUGCAGAACGAGGGGAGGAG 20 3122
BCLllA-2638 - GUGCCAGAUGAACUUCCCAU 20 3123
BCLllA-2639 + GUUCAUCUGGCACUGCCCAC 20 3124
BCLllA-2640 - GU UGGGAGCUCCAGAAG 17 3125
Table 4D provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to forth tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 4D
Figure imgf000198_0001
BCLllA-2669 - CACAAACGGAAACAAUGCAA 20 3154
BCLllA-2670 + CACUCAUCCCAGGCGUG 17 3155
BCLllA-2671 + CAGAACGAGGGGAGGAG 17 3156
BCLllA-2672 - CAGAUGAACUUCCCAUU 17 3157
BCLllA-2673 + CAGCUUUUUCUAAGCAG 17 3158
BCLllA-2674 - CAUCCAGGUCACGCCAG 17 3159
BCLllA-2675 + CAUCUCGAUUGGUGAAG 17 3160
BCLllA-2676 + CAUCUGGCACUGCCCAC 17 3161
BCLllA-2677 - CAUGACCUCCUCACCUG 17 3162
BCLllA-2678 + CCAAUGGGAAGUUCAUC 17 3163
BCLllA-2679 + CCACAGCUU UUUCUAAGCAG 20 3164
BCLllA-2680 - CCAGACCACGGCCCGUU 17 3165
BCLllA-2681 - CCAGAUGAACUUCCCAU 17 3166
BCLllA-2682 - CCAGAUGAACUUCCCAU UGG 20 3167
BCLllA-2683 - CC AG C ACU U AAG CAAAC 17 3168
BCLllA-2684 - CCCAG CAC U U AAG C AAA 17 3169
BCLllA-2685 + CCCCUUCUGGAGCUCCCAAC 20 3170
BCLllA-2686 - CCCGUUGGGAGCUCCAGAAG 20 3171
BCLllA-2687 - CCGUUGGGAGCUCCAGA 17 3172
BCLllA-2688 + CCGUUUGCUUAAGUGCU 17 3173
BCLllA-2689 - CCUCUGCUUAGAAAAAGCUG 20 3174
BCLllA-2690 + CCUUCUGGAGCUCCCAA 17 3175
BCLllA-2691 - CGUGGAGGUUGGCAUCC 17 3176
BCLllA-2692 - CGUUGGGAGCUCCAGAA 17 3177
BCLllA-2693 + CGUUUGCU UAAGUGCUG 17 3178
BCLllA-2694 + CUAUGUGUUCCUGUUUG 17 3179
BCLllA-2695 + CUCCAUGUGCAGAACGA 17 3180
BCLllA-2696 - CUCUAAUCCCCACGCCU 17 3181
BCLllA-2697 + CUGCACUCAUCCCAGGCGUG 20 3182
BCLllA-2698 + CUGCUAUGUGUUCCUGUUUG 20 3183
BCLllA-2699 - CUGCUUAGAAAAAGCUG 17 3184
BCLllA-2700 + CUGGAGCUCCCAACGGGCCG 20 3185
BCLllA-2701 + CUGGAUGCCAACCUCCA 17 3186
BCLllA-2702 + CUUCUGGAGCUCCCAAC 17 3187
BCLllA-2703 - UAAACUUCUGCACUGGA 17 3188
BCLllA-2704 + UAAGAAUGUCCCCCAAU 17 3189
BCLllA-2705 - UAGAGGAAUUUGCCCCAAAC 20 3190
BCLllA-2706 + UAUUCUGCACUCAUCCC 17 3191
BCLllA-2707 + UCCAUGUGCAGAACGAG 17 3192
BCLllA-2708 + UCCAUGUGCAGAACGAGGGG 20 3193
BCLllA-2709 - UCCCCUCGUUCUGCACA 17 3194
BCLllA-2710 + UCCCCUUCUGGAGCUCCCAA 20 3195 BCLllA-2711 - UCCCGUGGAGGUUGGCAUCC 20 3196
BCLllA-2712 - UCCUCCCCUCGUUCUGCACA 20 3197
BCLllA-2713 + UCGAUUGGUGAAGGGGA 17 3198
BCLllA-2714 + UCGAUUGGUGAAGGGGAAGG 20 3199
BCLllA-2715 + UCUGCACUCAUCCCAGGCGU 20 3200
BCLllA-2716 + UCUGGCACUGCCCACAGGUG 20 3201
BCLllA-2717 + UCUGUAAGAAUGGCUUCAAG 20 3202
BCLllA-2718 + UGCACUCAUCCCAGGCG 17 3203
BCLllA-2719 - UGCCAGAUGAACUUCCCAUU 20 3204
BCLllA-2720 + UGCUAUGUGUUCCUGUU 17 3205
BCLllA-2721 + UGGAUGCCAACCUCCAC 17 3206
BCLllA-2722 + UGGUUCAUCAUCUGUAAGAA 20 3207
BCLllA-2723 - UGUUUAUCAACGUCAUCUAG 20 3208
BCLllA-2724 - UUAUUUUUAUCGAGCACAAA 20 3209
BCLllA-2725 + U UCAUCAUCUGUAAGAA 17 3210
BCLllA-2726 + UUCCCGU UUGCUUAAGUGCU 20 3211
BCLllA-2727 + U UCUGCACUCAUCCCAGGCG 20 3212
BCLllA-2728 + UUUCAUCUCGAUUGGUGAAG 20 3213
BCLllA-2729 + UUUUCAUCUCGAUUGGUGAA 20 3214
BCLllA-2730 - U UUUUAUCGAGCACAAA 17 3215
BCLllA-2731 + U UUUUCAUCUCGAUUGGUGA 20 3216
Table 4E provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to fifth tier parameters. The targeting domains outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 4E
Figure imgf000201_0001
BCLllA-2760 - CACUUGCGACGAAGACU 17 3245
BCLllA-2761 - CGGGUUGGUAUCCCU UC 17 3246
BCLllA-2762 - CUCGUCGGAGCACUCCU 17 3247
BCLllA-2763 + CCCGGACCACUAAUAUG 17 3248
BCLllA-2764 + UCGGUGGUGGACUAAAC 17 3249
BCLllA-2765 + CAGGCGCUCUAUGCGGU 17 3250
BCLllA-2766 + AAGGGAUACCAACCCGC 17 3251
BCLllA-2767 + GGCGCUCUAUGCGGUGG 17 3252
BCLllA-2768 - CCACCGCAUAGAGCGCC 17 3253
BCLllA-2769 - UACUCGCAGUGGCUCGC 17 3254
BCLllA-2770 - CGGGCGAGUCGGCCUCG 17 3255
BCLllA-2771 + UACACGUUCUCCGUGUU 17 3256
BCLllA-2772 - AGCACGCCCCAUAUUAG 17 3257
BCLllA-2773 + GAAGGGAUACCAACCCG 17 3258
BCLllA-2774 + U UGGGCAUCGCGGCCGG 17 3259
BCLllA-2775 - CCGGGCGAGUCGGCCUC 17 3260
BCLllA-2776 + GGUGGAGAGACCGUCGU 17 3261
BCLllA-2777 + GUUGGGCAUCGCGGCCG 17 3262
BCLllA-2778 - AGAACGUGUACUCGCAG 17 3263
BCLllA-2779 + ACCAACCCGCGGGGUCA 17 3264
BCLllA-2780 - CACGAGAACAGCUCGCG 17 3265
BCLllA-2781 - UAUUAGUGGUCCGGGCC 17 3266
BCLllA-2782 + CGUCGCAAGUGUCCCUG 17 3267
BCLllA-2783 + CCCGCGAGCUGU UCUCG 17 3268
BCLllA-2784 + UGCGCCGGUGCACCACC 17 3269
BCLllA-2785 - CUGCCCGACGUCAUGCA 17 3270
BCLllA-2786 - GACGAAGACUCGGUGGC 17 3271
BCLllA-2787 - CCUGCCCGACGUCAUGC 17 3272
BCLllA-2788 + AAGGGCGGCUUGCUACC 17 3273
BCLllA-2789 - GGGUGGACUACGGCUUC 17 3274
BCLllA-2790 + UCGCUGGUGCCGGGUUC 17 3275
BCLllA-2791 - GGCGAGAAGCAUAAGCG 17 3276
BCLllA-2792 + GGACUUGAGCGCGCUGC 17 3277
BCLllA-2793 - CUCGGUGGCCGGCGAGU 17 3278
BCLllA-2794 + CCCGAGGCCGACUCGCC 17 3279
BCLllA-2795 - CCCGGGCGAGUCGGCCU 17 3280
BCLllA-2796 - CCGCAUAGAGCGCCUGG 17 3281
BCLllA-2797 + UGUUGGGCAUCGCGGCC 17 3282
BCLllA-2798 + GUGUUGGGCAUCGCGGC 17 3283
BCLllA-2799 + UCUCUCGAUACUGAUCC 17 3284
BCLllA-2800 - ACCCGAGUGCCUUUGAC 17 3285
BCLllA-2801 + UCCGACGAGGAGGCAAA 17 3286 BCLllA-2802 - ACCCGGCACCAGCGACU 17 3287
BCLllA-2803 + CCCCGUUCUCCGGGAUC 17 3288
BCLllA-2804 + CCGAGGCCGACUCGCCC 17 3289
BCLllA-2805 - CCCCAUAU UAGUGGUCC 17 3290
BCLllA-2806 + GACUUGGACUUGACCGG 17 3291
BCLllA-2807 - GCCCCAUAU UAGUGGUC 17 3292
BCLllA-2808 - AGGGUGGACUACGGCUU 17 3293
BCLllA-2809 - CAAAUCGUCCCCCAUGA 17 3294
BCLllA-2810 - CGACGUCAUGCAGGGCA 17 3295
BCLllA-2811 - GGCCGCGAUGCCCAACA 17 3296
BCLllA-2812 + CCAGGCGCUCUAUGCGG 17 3297
BCLllA-2813 - CCUGAUCCCGGAGAACG 17 3298
BCLllA-2814 + CCAACCCGCGGGGUCAG 17 3299
BCLllA-2815 - GGCGAGUCGGCCUCGGG 17 3300
BCLllA-2816 + GGCAAAAGGCGAUUGUC 17 3301
BCLllA-2817 + UUUGGACAGGCCCCCCG 17 3302
BCLllA-2818 + GCGGCUUGCUACCUGGC 17 3303
BCLllA-2819 + GGACUUGACCGUCAUGG 17 3304
BCLllA-2820 + GGAGUGCUCCGACGAGG 17 3305
BCLllA-2821 - AUUAGUGGUCCGGGCCC 17 3306
BCLllA-2822 - CCACGAGAACAGCUCGC 17 3307
BCLllA-2823 - GUAUCGAGAGAGGCUUC 17 3308
BCLllA-2824 + CUCCGUGUUGGGCAUCG 17 3309
BCLllA-2825 + CAAACUCCCGUUCUCCG 17 3310
BCLllA-2826 - ACCUGAUCCCGGAGAAC 17 3311
BCLllA-2827 - GGCACUGUUAAUGGCCG 17 3312
BCLllA-2828 + UUCUCCGGGAUCAGGU U 17 3313
BCLllA-2829 - UAUGGAGCCUCCCGCCA 17 3314
BCLllA-2830 + CUUGAUGCGCUUAGAGA 17 3315
BCLllA-2831 - UAGCAAGCCGCCCU UCC 17 3316
BCLllA-2832 - CCGGCUACGCGGCCUCC 17 3317
BCLllA-2833 + UCCAAGUGAUGUCUCGG 17 3318
BCLllA-2834 - GAACAGCUCGCGGGGCG 17 3319
BCLllA-2835 - GCUGCGGU UGAAUCCAA 17 3320
BCLllA-2836 + UGACUUGGACUUGACCG 17 3321
BCLllA-2837 - CCCGGAGAACGGGGACG 17 3322
BCLllA-2838 + GUGGCGCU UCAGCUUGC 17 3323
BCLllA-2839 + GU UCUCCGGGAUCAGGU 17 3324
BCLllA-2840 + CAGUGCCAUCGUCUAUG 17 3325
BCLllA-2841 + UCUCCGGGAUCAGGUUG 17 3326
BCLllA-2842 - GACGAUGGCACUGUUAA 17 3327
BCLllA-2843 - CUGCUCCCCGGGCGAGU 17 3328 BCLllA-2844 + CGGUGGUGGACUAAACA 17 3329
BCLllA-2845 - CUCGCGGGGCGCGGUCG 17 3330
BCLllA-2846 + AUGCCCUGCAUGACGUC 17 3331
BCLllA-2847 + UGGACUUGACCGGGGGC 17 3332
BCLllA-2848 - ACCACCGAGACAUCACU 17 3333
BCLllA-2849 - GGAGUUCGACCUGCCCC 17 3334
BCLllA-2850 + CCUGCAUGACGUCGGGC 17 3335
BCLllA-2851 + CUGCAUGACGUCGGGCA 17 3336
BCLllA-2852 - AGGAUCAGUAUCGAGAG 17 3337
BCLllA-2853 + GGACUUGACCGGGGGCU 17 3338
BCLllA-2854 + AAAGGCACUCGGGUGAU 17 3339
BCLllA-2855 - UGGACGGAGGGAUCUCG 17 3340
BCLllA-2856 + CCCCCAGGCGCUCUAUG 17 3341
BCLllA-2857 - CCGCCAUGGAUUUCUCU 17 3342
BCLllA-2858 - GGCGCGGUCGUGGGCGU 17 3343
BCLllA-2859 - AACCUGAUCCCGGAGAA 17 3344
BCLllA-2860 + CAUGCCCUGCAUGACGU 17 3345
BCLllA-2861 + CGCUGGUGCCGGGUUCC 17 3346
BCLllA-2862 + CCUGGAGGCCGCGUAGC 17 3347
BCLllA-2863 - CCCCUGACCCCGCGGGU 17 3348
BCLllA-2864 + GCUUAUGCU UCUCGCCC 17 3349
BCLllA-2865 - AAGUCAUGCGAGUUCUG 17 3350
BCLllA-2866 + CACCAAGUCGCUGGUGC 17 3351
BCLllA-2867 - CCCGAGUGCCUUUGACA 17 3352
BCLllA-2868 + CAUGACUUGGACUUGAC 17 3353
BCLllA-2869 - CGACCCCAACCUGAUCC 17 3354
BCLllA-2870 + ACCAAGUCGCUGGUGCC 17 3355
BCLllA-2871 + AAGUGAUGUCUCGGUGG 17 3356
BCLllA-2872 - CUUCUCCACACCGCCCG 17 3357
BCLllA-2873 + UGGAGUCUCCGAAGCUA 17 3358
BCLllA-2874 - CGCUUCUCCACACCGCC 17 3359
BCLllA-2875 + GCUGGUGCCGGGUUCCG 17 3360
BCLllA-2876 - CGCAGCGGCACGGGAAG 17 3361
BCLllA-2877 + GCAUCGCGGCCGGGGGC 17 3362
BCLllA-2878 - GAGCACUCCUCGGAGAA 17 3363
BCLllA-2879 + GGGGGGCGUCGCCAGGA 17 3364
BCLllA-2880 + GAAAGCGCCCUUCUGCC 17 3365
BCLllA-2881 - CUGGACGGAGGGAUCUC 17 3366
BCLllA-2882 - CGGCUUCGGGCUGAGCC 17 3367
BCLllA-2883 + GGGGGCGUCGCCAGGAA 17 3368
BCLllA-2884 + UAACCUUUGCAUAGGGC 17 3369
BCLllA-2885 - GGGCGAGUCGGCCUCGG 17 3370 BCLllA-2886 - CACACCGCCCGGGGAGC 17 3371
BCLllA-2887 - GGGAUCUCGGGGCGCAG 17 3372
BCLllA-2888 + CUCGCUGAAGUGCUGCA 17 3373
BCLllA-2889 - UCGGGGCGCAGCGGCAC 17 3374
BCLllA-2890 - AAGUCCCCUGACCCCGC 17 3375
BCLllA-2891 - GCCUUU UGCCUCCUCGU 17 3376
BCLllA-2892 - CACCUGGCCGAGGCCGA 17 3377
BCLllA-2893 - GGUAUCCCUUCAGGACU 17 3378
BCLllA-2894 + GUGGUGGACUAAACAGG 17 3379
BCLllA-2895 + GCGAGCUGUUCUCGUGG 17 3380
BCLllA-2896 - AGCACUCCUCGGAGAAC 17 3381
BCLllA-2897 - CAUGCAGCACU UCAGCG 17 3382
BCLllA-2898 + UGGCCUGGGUGCACGCG 17 3383
BCLllA-2899 - AGCGAGAGGGUGGACUA 17 3384
BCLllA-2900 + GCACAGGUUGCACUUGU 17 3385
BCLllA-2901 + GAGAAAUCCAUGGCGGG 17 3386
BCLllA-2902 + GCAGAACUCGCAUGACU 17 3387
BCLllA-2903 + UCUCCGAAGCUAAGGAA 17 3388
BCLllA-2904 + UGACGUCGGGCAGGGCG 17 3389
BCLllA-2905 + GGGUCCAAGUGAUGUCU 17 3390
BCLllA-2906 - GCAACCUGGUGGUGCAC 17 3391
BCLllA-2907 + GGUGGCGCGCCGCCUCC 17 3392
BCLllA-2908 + GCUGCCCACCAAGUCGC 17 3393
BCLllA-2909 + GU UCUCGCUCUUGAACU 17 3394
BCLllA-2910 + CCGCAGCACCCUGUCAA 17 3395
BCLllA-2911 - GAAGUCCCCUGACCCCG 17 3396
BCLllA-2912 - GCGCGGCCACCUGGCCG 17 3397
BCLllA-2913 + GGCGUCGCCAGGAAGGG 17 3398
BCLllA-2914 - GUUGAAUCCAAUGGCUA 17 3399
BCLllA-2915 - CUCGGGGCGCAGCGGCA 17 3400
BCLllA-2916 - CCGAGGCCGAGGGCCAC 17 3401
BCLllA-2917 + CUAAACAGGGGGGGAGU 17 3402
BCLllA-2918 - GCGGCACGGGAAGUGGA 17 3403
BCLllA-2919 + CACAGGUUGCACUUGUA 17 3404
BCLllA-2920 - CAGCGAGGCCU UCCACC 17 3405
BCLllA-2921 - AACCUGCUAAGAAUACC 17 3406
BCLllA-2922 + AUCCUGGUAUUCUUAGC 17 3407
BCLllA-2923 + GGUGGUGGACUAAACAG 17 3408
BCLllA-2924 - CGAGGCCGAGGGCCACA 17 3409
BCLllA-2925 + GUACAUGUGUAGCUGCU 17 3410
BCLllA-2926 + UUGAUGCGCUUAGAGAA 17 3411
BCLllA-2927 + UCCUCGUCCCCGUUCUC 17 3412 BCLllA-2928 + AUGACUUGGACUUGACC 17 3413
BCLllA-2929 + GUCUCCGAAGCUAAGGA 17 3414
BCLllA-2930 + GGUGGACUAAACAGGGG 17 3415
BCLllA-2931 + GCAUGUGCGUCUUCAUG 17 3416
BCLllA-2932 + GGCACUCGGGUGAUGGG 17 3417
BCLllA-2933 + AUAGGGCUGGGCCGGCC 17 3418
BCLllA-2934 + CCGUCCAGCUCCCCGGG 17 3419
BCLllA-2935 + GCAGUAACCUUUGCAUA 17 3420
BCLllA-2936 - GAUCCCU UCCUUAGCUU 17 3421
BCLllA-2937 + AAGGGGCUCAGCGAGCU 17 3422
BCLllA-2938 - AGCUGACGGAGAGCGAG 17 3423
BCLllA-2939 - UCGCGGGGCGCGGUCGU 17 3424
BCLllA-2940 - AGCGGCACGGGAAGUGG 17 3425
BCLllA-2941 + CAAAGGCACUCGGGUGA 17 3426
BCLllA-2942 + CUGCACCUAGUCCUGAA 17 3427
BCLllA-2943 - GCUGGACGGAGGGAUCU 17 3428
BCLllA-2944 + CCCUGUCAAAGGCACUC 17 3429
BCLllA-2945 + AACCUUUGCAUAGGGCU 17 3430
BCLllA-2946 + CGCCCGGGGAGCAGCCG 17 3431
BCLllA-2947 + UGGUGGACUAAACAGGG 17 3432
BCLllA-2948 - GGCCCAGCCCUAUGCAA 17 3433
BCLllA-2949 + CCUCGUCCCCGUUCUCC 17 3434
BCLllA-2950 - GCCAGCUCCCCGGAACC 17 3435
BCLllA-2951 + GCCGGGUUCCGGGGAGC 17 3436
BCLllA-2952 + UGCAGUAACCUU UGCAU 17 3437
BCLllA-2953 + GCU UCUCGCCCAGGACC 17 3438
BCLllA-2954 - CCGCCCGGGGAGCUGGA 17 3439
BCLllA-2955 - CCGGGGAGCUGGACGGA 17 3440
BCLllA-2956 - CUUCCGGCCUGGCAGAA 17 3441
BCLllA-2957 + CCUAGAGAAAUCCAUGG 17 3442
BCLllA-2958 + GGAGGGGGGGCGUCGCC 17 3443
BCLllA-2959 - UACUUAGAAAGCGAACA 17 3444
BCLllA-2960 + GGAGGCUCCAUAGCCAU 17 3445
BCLllA-2961 + ACACAUCUUGAGCUCUC 17 3446
BCLllA-2962 - GGCACCAGCGACU UGGU 17 3447
BCLllA-2963 + GGGAUCUUUGAGCUGCC 17 3448
BCLllA-2964 + GCAGCAGCUUUUUGGAC 17 3449
BCLllA-2965 + CUGCAAUAUGAAUCCCA 17 3450
BCLllA-2966 + UCUGCACCUAGUCCUGA 17 3451
BCLllA-2967 + GAAGGGGCUCAGCGAGC 17 3452
BCLllA-2968 + U UCCGGGGAGCUGGCGG 17 3453
BCLllA-2969 - GCACCGGCGCAGCCACA 17 3454 BCLllA-2970 + AUAUGAAUCCCAUGGAG 17 3455
BCLllA-2971 - GUGGUCCGGGCCCGGGC 17 3456
BCLllA-2972 - CUUCACACACCCCCAU U 17 3457
BCLllA-2973 - GUCCAAAAAGCUGCUGC 17 3458
BCLllA-2974 - CGGCACCAGCGACU UGG 17 3459
BCLllA-2975 - GCUUCUCCACACCGCCC 17 3460
BCLllA-2976 + CGCCCGUGUGGCUGCGC 17 3461
BCLllA-2977 - CACGCACAGAACACUCA 17 3462
BCLllA-2978 + UGUACAUGUGUAGCUGC 17 3463
BCLllA-2979 - CACCGGCGCAGCCACAC 17 3464
BCLllA-2980 + U UGCUACCUGGCUGGAA 17 3465
BCLllA-2981 + ACCCUGUCAAAGGCACU 17 3466
BCLllA-2982 - CCACCUGGCCGAGGCCG 17 3467
BCLllA-2983 + GGGCGGAUUGCAGAGGA 17 3468
BCLllA-2984 + CUAGAGAAAUCCAUGGC 17 3469
BCLllA-2985 - GGCGGAAGAGAUGGCCC 17 3470
BCLllA-2986 + GGGGCGGAUUGCAGAGG 17 3471
BCLllA-2987 - GUGUGGCAGUUU UCGGA 17 3472
BCLllA-2988 - GAGAGAGGCUUCCGGCC 17 3473
BCLllA-2989 + CGGGUGAUGGGUGGCCA 17 3474
BCLllA-2990 - CCCGGGGAGCUGGACGG 17 3475
BCLllA-2991 - UAGGAGACUUAGAGAGC 17 3476
BCLllA-2992 + CACAUCUUGAGCUCUCU 17 3477
BCLllA-2993 + CCUCGGCCUCGGCCAGG 17 3478
BCLllA-2994 - GGCCUUCCACCAGG UCC 17 3479
BCLllA-2995 + UCUCGCCCAGGACCUGG 17 3480
BCLllA-2996 + UCUGCCCUCU UUUGAGC 17 3481
BCLllA-2997 + ACUAAACAGGGGGGGAG 17 3482
BCLllA-2998 + CUUGACCGGGGGCUGGG 17 3483
BCLllA-2999 + UUGACCGGGGGCUGGGA 17 3484
BCLllA-3000 - AGACUUAGAGAGCUGGC 17 3485
BCLllA-3001 - AGCCCACCGCUGUCCCC 17 3486
BCLllA-3002 - AGCCAUUCACCAGUGCA 17 3487
BCLllA-3003 - GCUUCCGGCCUGGCAGA 17 3488
BCLllA-3004 - GACUUAGAGAGCUGGCA 17 3489
BCLllA-3005 - AGGCCCAGCUCAAAAGA 17 3490
BCLllA-3006 + UCGGGUGAUGGGUGGCC 17 3491
BCLllA-3007 + CAAGAGAAACCAUGCAC 17 3492
BCLllA-3008 + AUCUUUGAGCUGCCUGG 17 3493
BCLllA-3009 + UAUUCUUAGCAGGUUAA 17 3494
BCLllA-3010 + CUGCCCUCUU UUGAGCU 17 3495
BCLllA-3011 + CCAUCUCU UCCGCCCCC 17 3496 BCLllA-3012 - UGGCCGCGGCUGCUCCC 17 3497
BCLllA-3013 + CCUGUGGCCCUCGGCCU 17 3498
BCLllA-3014 + CAGCUCCCCGGGCGGUG 17 3499
BCLllA-3015 + U UUGCAUAGGGCUGGGC 17 3500
BCLllA-3016 + GGCCCUCGGCCUCGGCC 17 3501
BCLllA-3017 - GCUGACGGAGAGCGAGA 17 3502
BCLllA-3018 - AGAUGUGUGGCAGUUU U 17 3503
BCLllA-3019 + AUUCUUAGCAGGUUAAA 17 3504
BCLllA-3020 + UCUCCUAGAGAAAUCCA 17 3505
BCLllA-3021 - CCUUUGACAGGGUGCUG 17 3506
BCLllA-3022 + GGAGGGGCGGAUUGCAG 17 3507
BCLllA-3023 + UUCUUAGCAGGUUAAAG 17 3508
BCLllA-3024 + CGGAUUGCAGAGGAGGG 17 3509
BCLllA-3025 + UUUGAGCUGGGCCUGCC 17 3510
BCLllA-3026 + CUUCAGCUUGCUGGCCU 17 3511
BCLllA-3027 + CUUGAACUUGGCCACCA 17 3512
BCLllA-3028 - CUGCAACCAUUCCAGCC 17 3513
BCLllA-3029 - CAUAGAGCGCCUGGGGG 17 3514
BCLllA-3030 - GGGCGCGGUCGUGGGCG 17 3515
BCLllA-3031 + UCCCAUGGAGAGGUGGC 17 3516
BCLllA-3032 - GGCCGCGGCUGCUCCCC 17 3517
BCLllA-3033 - AUUUCAGAGCAACCUGG 17 3518
BCLllA-3034 - GCCUUCCACCAGGUCCU 17 3519
BCLllA-3035 + UGAAUCCCAUGGAGAGG 17 3520
BCLllA-3036 + UUGAGCUGGGCCUGCCC 17 3521
BCLllA-3037 + AGGGGCUCAGCGAGCUG 17 3522
BCLllA-3038 + AGGGCUUCUCGCCCGUG 17 3523
BCLllA-3039 - CACCGCUGUCCCCAGGC 17 3524
BCLllA-3040 - CAAAUUUCAGAGCAACC 17 3525
BCLllA-3041 - AGAGAGCUCAAGAUGUG 17 3526
BCLllA-3042 + AACCAUGCACUGGUGAA 17 3527
BCLllA-3043 + CCUCCGUCCAGCUCCCC 17 3528
BCLllA-3044 + AGUGUCCCUGUGGCCCU 17 3529
BCLllA-3045 + CCCUCCGUCCAGCUCCC 17 3530
BCLllA-3046 + GGCCUGGGGACAGCGGU 17 3531
BCLllA-3047 + GCCCAGCAGCAGCUUU U 17 3532
BCLllA-3048 - CAGGCCCAGCUCAAAAG 17 3533
BCLllA-3049 - CUUCGGGCUGAGCCUGG 17 3534
BCLllA-3050 + CCCAUGGAGAGGUGGCU 17 3535
BCLllA-3051 - CCCAGCCACCUCUCCAU 17 3536
BCLllA-3052 + GGGUUCCGGGGAGCUGG 17 3537
BCLllA-3053 + UAGGGCUGGGCCGGCCU 17 3538 BCLllA-3054 - CCUGGGGGCGGAAGAGA 17 3539
BCLllA-3055 + GCCCAGGACCUGGUGGA 17 3540
BCLllA-3056 - CGGGCUGAGCCUGGAGG 17 3541
BCLllA-3057 - ACCACGAGAACAGCUCG 17 3542
BCLllA-3058 + CGGCCUGGGGACAGCGG 17 3543
BCLllA-3059 - UCCAAAAAGCUGCUGCU 17 3544
BCLllA-3060 + GCGCCCUUCUGCCAGGC 17 3545
BCLllA-3061 - UCCCAGCCACCUCUCCA 17 3546
BCLllA-3062 - CUCCACCGCCAGCUCCC 17 3547
BCLllA-3063 + CUGGGCCUGCCCGGGCC 17 3548
BCLllA-3064 + AGGGCUGGGCCGGCCUG 17 3549
BCLllA-3065 + AACAGGGGGGGAGUGGG 17 3550
BCLllA-3066 - GGAGAACGGGGACGAGG 17 3551
BCLllA-3067 + UGAUGCGCUUAGAGAAG 17 3552
BCLllA-3068 + GGAUUGCAGAGGAGGGA 17 3553
BCLllA-3069 + GGCCGGCCUGGGGACAG 17 3554
BCLllA-3070 + GAUUGCAGAGGAGGGAG 17 3555
BCLllA-3071 + AUUGCAGAGGAGGGAGG 17 3556
BCLllA-3072 + ACCGGGGGCUGGGAGGG 17 3557
BCLllA-3073 + UGGAGAGGUGGCUGGGA 17 3558
BCLllA-3074 + UUGCAGAGGAGGGAGGG 17 3559
BCLllA-3075 - CGGGGACGAGGAGGAAG 17 3560
BCLllA-3076 - GACGGAGAGCGAGAGGG 17 3561
BCLllA-3077 - UCCUCCCUCCCAGCCCC 17 3562
BCLllA-3078 + GCU UCAGCUUGCUGGCC 17 3563
BCLllA-3079 + UGCAGAGGAGGGAGGGG 17 3564
BCLllA-3080 + GGGCUGGGAGGGAGGAG 17 3565
BCLllA-3081 - GGAAGAGGAGGACGACG 17 3566
BCLllA-3082 + GGGGCUGGGAGGGAGGA 17 3567
BCLllA-3083 - GGAGGACGACGAGGAAG 17 3568
BCLllA-3084 - GGAGGAGGAGGAGCUGA 17 3569
BCLllA-3085 + GGGGGCUGGGAGGGAGG 17 3570
BCLllA-3086 + CUGGGAGGGAGGAGGGG 17 3571
BCLllA-3087 - CGAGGAAGAGGAAGAAG 17 3572
BCLllA-3088 - GGACGAGGAGGAAGAGG 17 3573
BCLllA-3089 - GGAAGAAGAGGAGGAAG 17 3574
BCLllA-3090 - GGAAGAGGAAGAAGAGG 17 3575
BCLllA-3091 - AGAAGAGGAGGAAGAGG 17 3576
BCLllA-3092 - AGAGGAGGAAGAGGAGG 17 3577
BCLllA-3093 - GGAGGAAGAGGAGGAGG 17 3578
BCLllA-3094 + GUCUAUGCGGUCCGACUCGC 20 3579
BCLllA-3095 + UCGUCGGACUUGACCGUCAU 20 3580 BCLllA-3096 + CGUCGGACU UGACCGUCAUG 20 3581
BCLllA-3097 - AUGACGGUCAAGUCCGACGA 20 3582
BCLllA-3098 - GAGUCGGACCGCAUAGACGA 20 3583
BCLllA-3099 + CGGGCCCGGACCACUAAUAU 20 3584
BCLllA-3100 + GUCGUCGGACUUGACCGUCA 20 3585
BCLllA-3101 + CUCUGGGUACUACGCCGAAU 20 3586
BCLllA-3102 + CUGGGUACUACGCCGAAUGG 20 3587
BCLllA-3103 + CCGGGCCCGGACCACUAAUA 20 3588
BCLllA-3104 - CCGCGGGUUGGUAUCCCUUC 20 3589
BCLllA-3105 + UCUGGGUACUACGCCGAAUG 20 3590
BCLllA-3106 + GGAUACCAACCCGCGGGGUC 20 3591
BCLllA-3107 - ACGCCCCAUAUUAGUGGUCC 20 3592
BCLllA-3108 - CACUUGCGACGAAGACUCGG 20 3593
BCLllA-3109 + UCUCUGGGUACUACGCCGAA 20 3594
BCLllA-3110 - UAAGCGCAUCAAGCUCGAGA 20 3595
BCLllA-3111 - UGCGACGAAGACUCGGUGGC 20 3596
BCLllA-3112 + CGCGCUUAUGCUUCUCGCCC 20 3597
BCLllA-3113 + UGAAGGGAUACCAACCCGCG 20 3598
BCLllA-3114 + GGGCCCGGACCACUAAUAUG 20 3599
BCLllA-3115 + CGUGUUGGGCAUCGCGGCCG 20 3600
BCLllA-3116 + UCCGUGUUGGGCAUCGCGGC 20 3601
BCLllA-3117 + GUCGGACUUGACCGUCAUGG 20 3602
BCLllA-3118 + GCGCAAACUCCCGUUCUCCG 20 3603
BCLllA-3119 + CUCCGAGGAGUGCUCCGACG 20 3604
BCLllA-3120 + CACGGACUUGAGCGCGCUGC 20 3605
BCLllA-3121 - CACGCCCCAUAU UAGUGGUC 20 3606
BCLllA-3122 + GAUACCAACCCGCGGGGUCA 20 3607
BCLllA-3123 - CAGCGCGCUCAAGUCCGUGG 20 3608
BCLllA-3124 + GGGUGCACGCGUGGUCGCAC 20 3609
BCLllA-3125 - GAAGCAUAAGCGCGGCCACC 20 3610
BCLllA-3126 - GUGCGACCACGCGUGCACCC 20 3611
BCLllA-3127 + GAGUACACGUUCUCCGUGUU 20 3612
BCLllA-3128 + GUCUCGGUGGUGGACUAAAC 20 3613
BCLllA-3129 + CCGUUCUCCGGGAUCAGGUU 20 3614
BCLllA-3130 + CGAGUACACGUUCUCCGUGU 20 3615
BCLllA-3131 - CGGAGAACGUGUACUCGCAG 20 3616
BCLllA-3132 - GGGAGCACGCCCCAUAU UAG 20 3617
BCLllA-3133 - CCAUAUUAGUGGUCCGGGCC 20 3618
BCLllA-3134 + GCCGCAGAACUCGCAUGACU 20 3619
BCLllA-3135 + CGCCCCGCGAGCUGUUCUCG 20 3620
BCLllA-3136 - GCAGUGGCUCGCCGGCUACG 20 3621
BCLllA-3137 - CAUAUUAGUGGUCCGGGCCC 20 3622 BCLllA-3138 + CUGAAGGGAUACCAACCCGC 20 3623
BCLllA-3139 + AUACCAACCCGCGGGGUCAG 20 3624
BCLllA-3140 - CAG CAG CG CG C U CA AG U CCG 20 3625
BCLllA-3141 + CGUCCCCGUUCUCCGGGAUC 20 3626
BCLllA-3142 - CACCACGAGAACAGCUCGCG 20 3627
BCLllA-3143 - GCGGU UGAAUCCAAUGGCUA 20 3628
BCLllA-3144 - GGACACUUGCGACGAAGACU 20 3629
BCLllA-3145 + GUGUUGGGCAUCGCGGCCGG 20 3630
BCLllA-3146 + CUUCGUCGCAAGUGUCCCUG 20 3631
BCLllA-3147 + CCCCAGGCGCUCUAUGCGGU 20 3632
BCLllA-3148 + CCGUGUUGGGCAUCGCGGCC 20 3633
BCLllA-3149 + CGUUCUCCGGGAUCAGGUUG 20 3634
BCLllA-3150 + GCCUCUCUCGAUACUGAUCC 20 3635
BCLllA-3151 + UCGCAUGACU UGGACU UGAC 20 3636
BCLllA-3152 - AUCACCCGAGUGCCUUUGAC 20 3637
BCLllA-3153 - UAAGCGCGGCCACCUGGCCG 20 3638
BCLllA-3154 - GCACAAAUCGUCCCCCAUGA 20 3639
BCLllA-3155 - CGCCCUGCCCGACGUCAUGC 20 3640
BCLllA-3156 - CAACCUGAUCCCGGAGAACG 20 3641
BCLllA-3157 - CGGAGCACUCCUCGGAGAAC 20 3642
BCLllA-3158 - AGACUCGGUGGCCGGCGAGU 20 3643
BCLllA-3159 + GGCGGUGGAGAGACCGUCGU 20 3644
BCLllA-3160 - GUGUACUCGCAGUGGCUCGC 20 3645
BCLllA-3161 - UCGGAGCACUCCUCGGAGAA 20 3646
BCLllA-3162 - CCCGGCCGCGAUGCCCAACA 20 3647
BCLllA-3163 + CCCGUUCUCCGGGAUCAGGU 20 3648
BCLllA-3164 + UCGGUGGUGGACUAAACAGG 20 3649
BCLllA-3165 + CCUGAAGGGAUACCAACCCG 20 3650
BCLllA-3166 + GUCGUUCUCGCUCUUGAACU 20 3651
BCLllA-3167 - CCCCACCGCAUAGAGCGCCU 20 3652
BCLllA-3168 + GUCGCUGGUGCCGGGU UCCG 20 3653
BCLllA-3169 - CGAGAACAGCUCGCGGGGCG 20 3654
BCLllA-3170 + CGCAUGACUUGGACUUGACC 20 3655
BCLllA-3171 - CCCACCGCAUAGAGCGCCUG 20 3656
BCLllA-3172 + AAGUCGCUGGUGCCGGGUUC 20 3657
BCLllA-3173 + CGAGGAGUGCUCCGACGAGG 20 3658
BCLllA-3174 - UCCCCGGGCGAGUCGGCCUC 20 3659
BCLllA-3175 - CUCCCCGGGCGAGUCGGCCU 20 3660
BCLllA-3176 + CAUGACUUGGACUUGACCGG 20 3661
BCLllA-3177 - AGCUCGCGGGGCGCGGUCGU 20 3662
BCLllA-3178 + UGCUCCGACGAGGAGGCAAA 20 3663
BCLllA-3179 + CUUUUUGGACAGGCCCCCCG 20 3664 BCLllA-3180 - CUACGGCU UCGGGCUGAGCC 20 3665
BCLllA-3181 - CCCCGGGCGAGUCGGCCUCG 20 3666
BCLllA-3182 + UAACAGUGCCAUCGUCUAUG 20 3667
BCLllA-3183 - CUCCUCGUCGGAGCACUCCU 20 3668
BCLllA-3184 - CCCGGCACCAGCGACUUGGU 20 3669
BCLllA-3185 - GCGCUUCUCCACACCGCCCG 20 3670
BCLllA-3186 + CUCGGUGGUGGACUAAACAG 20 3671
BCLllA-3187 - CCCCCACCGCAUAGAGCGCC 20 3672
BCLllA-3188 - GAUCCCGGAGAACGGGGACG 20 3673
BCLllA-3189 + CCAGGCGCUCUAUGCGGUGG 20 3674
BCLllA-3190 - U UAGUGGUCCGGGCCCGGGC 20 3675
BCLllA-3191 + CCCAGGCGCUCUAUGCGGUG 20 3676
BCLllA-3192 - CGGCUGCUCCCCGGGCGAGU 20 3677
BCLllA-3193 - UCGCCGGCUACGCGGCCUCC 20 3678
BCLllA-3194 - AUCGAGAGAGGCUUCCGGCC 20 3679
BCLllA-3195 + GGGUCCAAGUGAUGUCUCGG 20 3680
BCLllA-3196 - AUCGCCU UUUGCCUCCUCGU 20 3681
BCLllA-3197 - AUCUCGGGGCGCAGCGGCAC 20 3682
BCLllA-3198 + CGGUGGUGGACUAAACAGGG 20 3683
BCLllA-3199 - GAUGGCACUGUUAAUGGCCG 20 3684
BCLllA-3200 + UGCCCUGCAUGACGUCGGGC 20 3685
BCLllA-3201 + UCUCGGUGGUGGACUAAACA 20 3686
BCLllA-3202 - AGAGGGUGGACUACGGCUUC 20 3687
BCLllA-3203 + CCCCGAGGCCGACUCGCCCG 20 3688
BCLllA-3204 - GAUCUCGGGGCGCAGCGGCA 20 3689
BCLllA-3205 - ACGGAAGUCCCCUGACCCCG 20 3690
BCLllA-3206 + ACUCGCCCGGGGAGCAGCCG 20 3691
BCLllA-3207 - U UGCGCUUCUCCACACCGCC 20 3692
BCLllA-3208 - GGAACCCGGCACCAGCGACU 20 3693
BCLllA-3209 + GCAUGACUUGGACUUGACCG 20 3694
BCLllA-3210 - UAAUGGCCGCGGCUGCUCCC 20 3695
BCLllA-3211 - CCGGGCGAGUCGGCCUCGGG 20 3696
BCLllA-3212 + GUCAAAGGCACUCGGGUGAU 20 3697
BCLllA-3213 - GGUGCUGCGGUUGAAUCCAA 20 3698
BCLllA-3214 - CUGGGCGAGAAGCAUAAGCG 20 3699
BCLllA-3215 + ACUUGGACUUGACCGGGGGC 20 3700
BCLllA-3216 + CCCCCCGAGGCCGACUCGCC 20 3701
BCLllA-3217 - CCACCGCAUAGAGCGCCUGG 20 3702
BCLllA-3218 + AGUCGCUGGUGCCGGGUUCC 20 3703
BCLllA-3219 + UCGCACAGGUUGCACUUGUA 20 3704
BCLllA-3220 + GCCCUGCAUGACGUCGGGCA 20 3705
BCLllA-3221 + CCGCCCCCAGGCGCUCUAUG 20 3706 BCLllA-3222 - GCCCUGCCCGACGUCAUGCA 20 3707
BCLllA-3223 + GUCGCACAGGU UGCACU UGU 20 3708
BCLllA-3224 - AGGUAGCAAGCCGCCCUUCC 20 3709
BCLllA-3225 - CCAACCUGAUCCCGGAGAAC 20 3710
BCLllA-3226 + AGGAAGGGCGGCUUGCUACC 20 3711
BCLllA-3227 - GAAGGAGUUCGACCUGCCCC 20 3712
BCLllA-3228 + CUUGGACUUGACCGGGGGCU 20 3713
BCLllA-3229 - GAGAGGGUGGACUACGGCUU 20 3714
BCLllA-3230 - UCCAAGUCAUGCGAGUUCUG 20 3715
BCLllA-3231 - ACCCGGCACCAGCGACUUGG 20 3716
BCLllA-3232 + CCCCCAGGCGCUCUAUGCGG 20 3717
BCLllA-3233 + GCGUCUGCCCUCUUUUGAGC 20 3718
BCLllA-3234 - GCCCGACGUCAUGCAGGGCA 20 3719
BCLllA-3235 + GAGCUUGAUGCGCUUAGAGA 20 3720
BCLllA-3236 - CAGCUCGCGGGGCGCGGUCG 20 3721
BCLllA-3237 + CGUGGUGGCGCGCCGCCUCC 20 3722
BCLllA-3238 - UCACCCGAGUGCCU UUGACA 20 3723
BCLllA-3239 - GAACGACCCCAACCUGAUCC 20 3724
BCLllA-3240 + CAACCGCAGCACCCUG UCAA 20 3725
BCLllA-3241 + UCCAAGUGAUGUCUCGGUGG 20 3726
BCLllA-3242 + GUUCUCCGUGUUGGGCAUCG 20 3727
BCLllA-3243 - CGGAAGUCCCCUGACCCCGC 20 3728
BCLllA-3244 + UAUGCUUCUCGCCCAGGACC 20 3729
BCLllA-3245 - AGCUGGACGGAGGGAUCUCG 20 3730
BCLllA-3246 + GGCUGCGCCGGUGCACCACC 20 3731
BCLllA-3247 - GU UGGUAUCCCUUCAGGACU 20 3732
BCLllA-3248 - AUAGACGAUGGCACUGU UAA 20 3733
BCLllA-3249 - CUCCCGCCAUGGAU UUCUCU 20 3734
BCLllA-3250 - ACCAGGAUCAGUAUCGAGAG 20 3735
BCLllA-3251 - AGUCCCCUGACCCCGCGGGU 20 3736
BCLllA-3252 + GUCUGGAGUCUCCGAAGCUA 20 3737
BCLllA-3253 - GCCGGCCCAGCCCUAUGCAA 20 3738
BCLllA-3254 - GAUGUGUGGCAGUU UUCGGA 20 3739
BCLllA-3255 + CUAGAGAAAUCCAUGGCGGG 20 3740
BCLllA-3256 + GGCGCUGCCCACCAAGUCGC 20 3741
BCLllA-3257 - CCCGGGCGAGUCGGCCUCGG 20 3742
BCLllA-3258 - ACACCGCCCGGGGAGCUGGA 20 3743
BCLllA-3259 + CAGUAACCUUUGCAUAGGGC 20 3744
BCLllA-3260 - UCAGUAUCGAGAGAGGCUUC 20 3745
BCLllA-3261 + GCAUGACGUCGGGCAGGGCG 20 3746
BCLllA-3262 - CCGCAUAGAGCGCCUGGGGG 20 3747
BCLllA-3263 + CCCCCGAGGCCGACUCGCCC 20 3748 BCLllA-3264 + AGGGCGGCUUGCUACCUGGC 20 3749
BCLllA-3265 + GCACCCUGUCAAAGGCACUC 20 3750
BCLllA-3266 + CUGAUCCUGGUAUUCU UAGC 20 3751
BCLllA-3267 + CAUGUGGCGCUUCAGCU UGC 20 3752
BCLllA-3268 + CCCACCAAGUCGCUGGUGCC 20 3753
BCLllA-3269 + GGAGGCAAAAGGCGAUUGUC 20 3754
BCLllA-3270 - CCCAACCUGAUCCCGGAGAA 20 3755
BCLllA-3271 + GAGUCUCCGAAGCUAAGGAA 20 3756
BCLllA-3272 - GGCUAUGGAGCCUCCCGCCA 20 3757
BCLllA-3273 + CGUCUGCCCUCUUUUGAGCU 20 3758
BCLllA-3274 - CGCCCGGGGAGCUGGACGGA 20 3759
BCLllA-3275 + AGUAACCUUUGCAUAGGGCU 20 3760
BCLllA-3276 - UCCACCACCGAGACAUCACU 20 3761
BCLllA-3277 + GGUUGCAGUAACCUUUGCAU 20 3762
BCLllA-3278 + GCAAUAUGAAUCCCAUGGAG 20 3763
BCLllA-3279 + ACCAUGCCCUGCAUGACGUC 20 3764
BCLllA-3280 + GGCCUCGCUGAAGUGCUGCA 20 3765
BCLllA-3281 - AGAGCAACCUGGUGGUGCAC 20 3766
BCLllA-3282 + GCCCACCAAGUCGCUGGUGC 20 3767
BCLllA-3283 + UGUCAAAGGCACUCGGGUGA 20 3768
BCLllA-3284 + AGCUUGAUGCGCUUAGAGAA 20 3769
BCLllA-3285 + AGGGGGGGCGUCGCCAGGAA 20 3770
BCLllA-3286 + GUGGAAAGCGCCCUUCUGCC 20 3771
BCLllA-3287 + UGGGGGUCCAAGUGAUGUCU 20 3772
BCLllA-3288 - CUCCAUGCAGCACUUCAGCG 20 3773
BCLllA-3289 + GCGCUUCAGCUUGCUGGCCU 20 3774
BCLllA-3290 - CUUCAGCGAGGCCUUCCACC 20 3775
BCLllA-3291 + GGAGUCUCCGAAGCUAAGGA 20 3776
BCLllA-3292 + CACUCGGGUGAUGGGUGGCC 20 3777
BCLllA-3293 - UGCGCUUCUCCACACCGCCC 20 3778
BCLllA-3294 + GGUGGUGGACUAAACAGGGG 20 3779
BCLllA-3295 - CGAGGCCUUCCACCAGGUCC 20 3780
BCLllA-3296 - AAUGGCCGCGGCUGCUCCCC 20 3781
BCLllA-3297 + GUUGUACAUGUGUAGCUGCU 20 3782
BCLllA-3298 - GUUCUUCACACACCCCCAUU 20 3783
BCLllA-3299 - CGCAGCGGCACGGGAAGUGG 20 3784
BCLllA-3300 + GCGGGAGGCUCCAUAGCCAU 20 3785
BCLllA-3301 - GGUGCACCGGCGCAGCCACA 20 3786
BCLllA-3302 - CUCCACACCGCCCGGGGAGC 20 3787
BCLllA-3303 + AAAGCGCCCUUCUGCCAGGC 20 3788
BCLllA-3304 + ACUCGGGUGAUGGGUGGCCA 20 3789
BCLllA-3305 + CUGCCUGGAGGCCGCGUAGC 20 3790 BCLllA-3306 + GUCCAGCUCCCCGGGCGGUG 20 3791
BCLllA-3307 - GAGCUGGACGGAGGGAUCUC 20 3792
BCLllA-3308 - UCUAGCCCACCGCUGUCCCC 20 3793
BCLllA-3309 + AGUUGUACAUGUGUAGCUGC 20 3794
BCLllA-3310 + AUUCUGCACCUAGUCCUGAA 20 3795
BCLllA-3311 - CCACCACGAGAACAGCUCGC 20 3796
BCLllA-3312 + CUCCUAGAGAAAUCCAUGGC 20 3797
BCLllA-3313 - U UUAACCUGCUAAGAAUACC 20 3798
BCLllA-3314 + GGACUAAACAGGGGGGGAGU 20 3799
BCLllA-3315 - GGCCACCUGGCCGAGGCCGA 20 3800
BCLllA-3316 + GGCUUGCUACCUGGCUGGAA 20 3801
BCLllA-3317 + CAUUCUGCACCUAGUCCUGA 20 3802
BCLllA-3318 + UGCUGGCCUGGGUGCACGCG 20 3803
BCLllA-3319 + UGUGGCCCUCGGCCUCGGCC 20 3804
BCLllA-3320 - CCGCCCGGGGAGCUGGACGG 20 3805
BCLllA-3321 - UGGCCGAGGCCGAGGGCCAC 20 3806
BCLllA-3322 + UGGGCAUCGCGGCCGGGGGC 20 3807
BCLllA-3323 + UCUCCUAGAGAAAUCCAUGG 20 3808
BCLllA-3324 + GGGCCAUCUCUUCCGCCCCC 20 3809
BCLllA-3325 + GU UGCAGUAACCUUUGCAUA 20 3810
BCLllA-3326 + AAAGGCACUCGGGUGAUGGG 20 3811
BCLllA-3327 + GAAGGGAUCUUUGAGCUGCC 20 3812
BCLllA-3328 + GCCACACAUCUUGAGCUCUC 20 3813
BCLllA-3329 - GGAGGGAUCUCGGGGCGCAG 20 3814
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 3815
BCLllA-3331 + UGCAUAGGGCUGGGCCGGCC 20 3816
BCLllA-3332 - CGGGGCGCGGUCGUGGGCGU 20 3817
BCLllA-3333 + GAGGGGGGGCGUCGCCAGGA 20 3818
BCLllA-3334 - ACCGCCAGCUCCCCGGAACC 20 3819
BCLllA-3335 + GGUAUUCUUAGCAGGUUAAA 20 3820
BCLllA-3336 - AGGCUUCCGGCCUGGCAGAA 20 3821
BCLllA-3337 + GAUCCCUCCGUCCAGCUCCC 20 3822
BCLllA-3338 + UGGUAUUCUUAGCAGGUUAA 20 3823
BCLllA-3339 - AUCUACUUAGAAAGCGAACA 20 3824
BCLllA-3340 - CGGCCACCUGGCCGAGGCCG 20 3825
BCLllA-3341 - CAACACGCACAGAACACUCA 20 3826
BCLllA-3342 + GCCGGCCUGGGGACAGCGGU 20 3827
BCLllA-3343 - GCCACCACGAGAACAGCUCG 20 3828
BCLllA-3344 + GUAUUCUUAGCAGGUUAAAG 20 3829
BCLllA-3345 - CUCUAGGAGACUUAGAGAGC 20 3830
BCLllA-3346 - AACAGCCAUUCACCAGUGCA 20 3831
BCLllA-3347 + U UGCAAGAGAAACCAUGCAC 20 3832 BCLllA-3348 + GACUUGACCGGGGGCUGGGA 20 3833
BCLllA-3349 + ACCU UUGCAUAGGGCUGGGC 20 3834
BCLllA-3350 + UCUUUUGAGCUGGGCCUGCC 20 3835
BCLllA-3351 - GAGGCCU UCCACCAGGUCCU 20 3836
BCLllA-3352 + CUUUUGAGCUGGGCCUGCCC 20 3837
BCLllA-3353 + GGGAUCUUUGAGCUGCCUGG 20 3838
BCLllA-3354 - GGGCAGGCCCAGCUCAAAAG 20 3839
BCLllA-3355 + AGCACCCUGUCAAAGGCACU 20 3840
BCLllA-3356 + UGGACUAAACAGGGGGGGAG 20 3841
BCLllA-3357 + GCUCUUGAACUUGGCCACCA 20 3842
BCLllA-3358 + GAAUCCCAUGGAGAGGUGGC 20 3843
BCLllA-3359 - GUGCACCGGCGCAGCCACAC 20 3844
BCLllA-3360 - AAAGAUCCCUUCCUUAGCUU 20 3845
BCLllA-3361 + UGUCUGCAAUAUGAAUCCCA 20 3846
BCLllA-3362 - GGCAGGCCCAGCUCAAAAGA 20 3847
BCLllA-3363 + CCUCCGUCCAGCUCCCCGGG 20 3848
BCLllA-3364 - CUGUCCAAAAAGCUGCUGCU 20 3849
BCLllA-3365 + GCUUGAUGCGCUUAGAGAAG 20 3850
BCLllA-3366 - CGGCUUCGGGCUGAGCCUGG 20 3851
BCLllA-3367 + CACCAUGCCCUGCAUGACGU 20 3852
BCLllA-3368 - UCAAGAUGUGUGGCAGUUUU 20 3853
BCLllA-3369 - GUUCAAAUUUCAGAGCAACC 20 3854
BCLllA-3370 + GAGAAGGGGCUCAGCGAGCU 20 3855
BCLllA-3371 - GCAGCGGCACGGGAAGUGGA 20 3856
BCLllA-3372 + AAGUCUCCUAGAGAAAUCCA 20 3857
BCLllA-3373 + GGUGCCGGGUUCCGGGGAGC 20 3858
BCLllA-3374 - CCUGUCCAAAAAGCUGCUGC 20 3859
BCLllA-3375 + AUAUGAAUCCCAUGGAGAGG 20 3860
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 3861
BCLllA-3377 - GGCCGAGGCCGAGGGCCACA 20 3862
BCLllA-3378 + GCAAGUGUCCCUGUGGCCCU 20 3863
BCLllA-3379 + GGACUUGACCGGGGGCUGGG 20 3864
BCLllA-3380 + GCUUCUCGCCCAGGACCUGG 20 3865
BCLllA-3381 - GCGCCUGGGGGCGGAAGAGA 20 3866
BCLllA-3382 + GUCCCUGUGGCCCUCGGCCU 20 3867
BCLllA-3383 + AUCCCUCCGUCCAGCUCCCC 20 3868
BCLllA-3384 - GUGCCU UUGACAGGGUGCUG 20 3869
BCLllA-3385 - CCCAGAGAGCUCAAGAUGUG 20 3870
BCLllA-3386 + GGCCCUCGGCCUCGGCCAGG 20 3871
BCLllA-3387 - GAGAGCGAGAGGGUGGACUA 20 3872
BCLllA-3388 + GGGGGCGUCGCCAGGAAGGG 20 3873
BCLllA-3389 + AGAGAAGGGGCUCAGCGAGC 20 3874 BCLllA-3390 + CCACACAUCUUGAGCUCUCU 20 3875
BCLllA-3391 + GCUGCCCAGCAGCAGCUUUU 20 3876
BCLllA-3392 - GGAGCUGGACGGAGGGAUCU 20 3877
BCLllA-3393 - GGGGGCGGAAGAGAUGGCCC 20 3878
BCLllA-3394 - AGGAGACUUAGAGAGCUGGC 20 3879
BCLllA-3395 - GAGGCUUCCGGCCUGGCAGA 20 3880
BCLllA-3396 + AAUCCCAUGGAGAGGUGGCU 20 3881
BCLllA-3397 + UGUGCAUGUGCGUCUUCAUG 20 3882
BCLllA-3398 + CUCGCCCAGGACCUGGUGGA 20 3883
BCLllA-3399 + UCCUCCUCGUCCCCGUUCUC 20 3884
BCLllA-3400 + AGAAACCAUGCACUGGUGAA 20 3885
BCLllA-3401 - CUUCGGGCUGAGCCUGGAGG 20 3886
BCLllA-3402 + GCCGGGU UCCGGGGAGCUGG 20 3887
BCLllA-3403 + AGAAGGGGCUCAGCGAGCUG 20 3888
BCLllA-3404 + CUAAACAGGGGGGGAGUGGG 20 3889
BCLllA-3405 - CAAAUUUCAGAGCAACCUGG 20 3890
BCLllA-3406 + GAGGGAGGGGGGGCGUCGCC 20 3891
BCLllA-3407 + CCUCCUCGUCCCCGUUCUCC 20 3892
BCLllA-3408 + CCAGCAGCAGCUUUUUGGAC 20 3893
BCLllA-3409 - GCCCACCGCUGUCCCCAGGC 20 3894
BCLllA-3410 - GGAGACUUAGAGAGCUGGCA 20 3895
BCLllA-3411 - AGGAGCUGACGGAGAGCGAG 20 3896
BCLllA-3412 + GAGGGGCGGAUUGCAGAGGA 20 3897
BCLllA-3413 + CAUAGGGCUGGGCCGGCCUG 20 3898
BCLllA-3414 + GGCGGAUUGCAGAGGAGGGA 20 3899
BCLllA-3415 + GGAGGGGCGGAUUGCAGAGG 20 3900
BCLllA-3416 - U UACUGCAACCAUUCCAGCC 20 3901
BCLllA-3417 + GCAUAGGGCUGGGCCGGCCU 20 3902
BCLllA-3418 + GGGCGGAUUGCAGAGGAGGG 20 3903
BCLllA-3419 + GGGUUCCGGGGAGCUGGCGG 20 3904
BCLllA-3420 + UCUCGCCCGUGUGGCUGCGC 20 3905
BCLllA-3421 - CUUCCCAGCCACCUCUCCAU 20 3906
BCLllA-3422 - GCUGACGGAGAGCGAGAGGG 20 3907
BCLllA-3423 + GCGGAUUGCAGAGGAGGGAG 20 3908
BCLllA-3424 - GGAGCUGACGGAGAGCGAGA 20 3909
BCLllA-3425 - UCUCUCCACCGCCAGCUCCC 20 3910
BCLllA-3426 + UUGACCGGGGGCUGGGAGGG 20 3911
BCLllA-3427 + CGGAUUGCAGAGGAGGGAGG 20 3912
BCLllA-3428 - GCGGGGCGCGGUCGUGGGCG 20 3913
BCLllA-3429 + GAGCUGGGCCUGCCCGGGCC 20 3914
BCLllA-3430 + CUGGGCCGGCCUGGGGACAG 20 3915
BCLllA-3431 + UGUAGGGCUUCUCGCCCGUG 20 3916 BCLllA-3432 + CCAUGGAGAGGUGGCUGGGA 20 3917
BCLllA-3433 + GGAGGAGGGGCGGAUUGCAG 20 3918
BCLllA-3434 - CCUUCCCAGCCACCUCUCCA 20 3919
BCLllA-3435 + CCCGCGAGCUGUUCUCGUGG 20 3920
BCLllA-3436 + GAUUGCAGAGGAGGGAGGGG 20 3921
BCLllA-3437 + GGCCGGCCUGGGGACAGCGG 20 3922
BCLllA-3438 + GGAUUGCAGAGGAGGGAGGG 20 3923
BCLllA-3439 + ACCGGGGGCUGGGAGGGAGG 20 3924
BCLllA-3440 + CCGGGGGCUGGGAGGGAGGA 20 3925
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 3926
BCLllA-3442 - CCCUCCUCCCUCCCAGCCCC 20 3927
BCLllA-3443 + CGGGGGCUGGGAGGGAGGAG 20 3928
BCLllA-3444 + GGCGCUUCAGCUUGCUGGCC 20 3929
BCLllA-3445 - CGGGGACGAGGAGGAAGAGG 20 3930
BCLllA-3446 - AGAGGAGGAGGAGGAGCUGA 20 3931
BCLllA-3447 + GGGCUGGGAGGGAGGAGGGG 20 3932
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 3933
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 3934
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 3935
BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 3936
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 3937
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 3938
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 3939
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 3940
Table 5A provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to first tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 5A
Figure imgf000219_0001
Table 5B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 5B
Figure imgf000220_0001
Table 5C provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to third tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 5C
Figure imgf000221_0001
BCLllA-3496 - GCCACCUUCCCCUUCACCAA 20 3981
BCLllA-3497 - GCCAGAUGAACUUCCCA 17 3982
BCLllA-3498 - GCCAGAUGAACUUCCCAUUG 20 3983
BCLllA-3499 - GCCCGUUGGGAGCUCCAGAA 20 3984
BCLllA-3500 - GCCUCUGCUUAGAAAAAGCU 20 3985
BCLllA-3501 + GCUCCAUGUGCAGAACG 17 3986
BCLllA-3502 - GCUCUAAUCCCCACGCC 17 3987
BCLllA-3503 - GGACAUUCUUAUUUUUA 17 3988
BCLllA-3504 - GGAGCUCUAAUCCCCACGCC 20 3989
BCLllA-3505 - GGAUCAUGACCUCCUCACCU 20 3990
BCLllA-3506 + GGAUGCCAACCUCCACGGGA 20 3991
BCLllA-3507 + GGCACUGCCCACAGGUG 17 3992
BCLllA-3508 - GGCCCGU UGGGAGCUCCAGA 20 3993
BCLllA-3509 - GGGGGACAUUCUUAUUUUUA 20 3994
BCLllA-3510 - GGUUGGCAUCCAGGUCACGC 20 3995
BCLllA-3511 + GGUUUGCCUUGCUUGCG 17 3996
BCLllA-3512 + GUGCAGAACGAGGGGAG 17 3997
BCLllA-3513 - GUGCCAGAUGAACUUCCCAU 20 3998
Table 5D provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to forth tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 5D
Figure imgf000223_0001
BCLllA-3545 - CACGCCUGGGAUGAGUG 17 4030
BCLllA-3546 - CAGAUGAACUUCCCAUU 17 4031
BCLllA-3547 + CAUCUCGAUUGGUGAAG 17 4032
BCLllA-3548 + CAUGUGCAGAACGAGGG 17 4033
BCLllA-3549 + CAUGUGCAGAACGAGGGGAG 20 4034
BCLllA-3550 + CCACAGCU UUUUCUAAG 17 4035
BCLllA-3551 - CCACGGCCCGUUGGGAGCUC 20 4036
BCLllA-3552 - CCAGAUGAACUUCCCAU 17 4037
BCLllA-3553 - CC AG C ACU U AAG CAAAC 17 4038
BCLllA-3554 - CCCAG CAC U U AAG C AAA 17 4039
BCLllA-3555 - CCCCACGCCUGGGAUGAGUG 20 4040
BCLllA-3556 - CCCCAGCACUUAAGCAA 17 4041
BCLllA-3557 - CCCCUUCACCAAUCGAG 17 4042
BCLllA-3558 - CCCGUUGGGAGCUCCAG 17 4043
BCLllA-3559 + CCCUUCUGGAGCUCCCA 17 4044
BCLllA-3560 - CCGUUGGGAGCUCCAGA 17 4045
BCLllA-3561 - CCUGUGGGCAGUGCCAG 17 4046
BCLllA-3562 - CGGCCCGUUGGGAGCUC 17 4047
BCLllA-3563 - CGGCCCGUUGGGAGCUCCAG 20 4048
BCLllA-3564 - CGUUGGGAGCUCCAGAA 17 4049
BCLllA-3565 + CGUUUGUGCUCGAUAAAAAU 20 4050
BCLllA-3566 - CUAGAGGAAUUUGCCCCAAA 20 4051
BCLllA-3567 + CUCAUCCCAGGCGUGGGGAU 20 4052
BCLllA-3568 + CUCCAUGUGCAGAACGA 17 4053
BCLllA-3569 + CUCCAUGUGCAGAACGAGGG 20 4054
BCLllA-3570 - CUCCCCUCGUUCUGCAC 17 4055
BCLllA-3571 - CUCCUCCCCUCGU UCUGCAC 20 4056
BCLllA-3572 - CUCUAAUCCCCACGCCUGGG 20 4057
BCLllA-3573 + CUGCACUCAUCCCAGGC 17 4058
BCLllA-3574 - CUUAUUUUUAUCGAGCACAA 20 4059
BCLllA-3575 - CUUCCCCUUCACCAAUCGAG 20 4060
BCLllA-3576 + UAAGAAUGUCCCCCAAU 17 4061
BCLllA-3577 - UAAUCCCCACGCCUGGG 17 4062
BCLllA-3578 + UAGAGCUCCAUGUGCAGAAC 20 4063
BCLllA-3579 - UAGAGGAAUUUGCCCCAAAC 20 4064
BCLllA-3580 + UAUCCACAGCUUUUUCUAAG 20 4065
BCLllA-3581 - UCACCUGUGGGCAGUGCCAG 20 4066
BCLllA-3582 + UCAUCUCGAU UGGUGAA 17 4067
BCLllA-3583 + UCAUCUGGCACUGCCCACAG 20 4068
BCLllA-3584 + UCAUCUGUAAGAAUGGCUUC 20 4069
BCLllA-3585 - UCAUGACCUCCUCACCU 17 4070
BCLllA-3586 + UCCAUGUGCAGAACGAG 17 4071 BCLllA-3587 + UCCAUGUGCAGAACGAGGGG 20 4072
BCLllA-3588 - UCCCCUCGUUCUGCACA 17 4073
BCLllA-3589 - UCCUCCCCUCGUUCUGCACA 20 4074
BCLllA-3590 - UCUGCU UAGAAAAAGCU 17 4075
BCLllA-3591 + UCUGGCACUGCCCACAG 17 4076
BCLllA-3592 + UCUGGCACUGCCCACAGGUG 20 4077
BCLllA-3593 + UCUGUAAGAAUGGCUUC 17 4078
BCLllA-3594 - UGAAAAAAGCAUCCAAUCCC 20 4079
BCLllA-3595 - UGAAGCCAUUCU UACAGAUG 20 4080
BCLllA-3596 + UGCCAACCUCCACGGGA 17 4081
BCLllA-3597 - UGCCAGAUGAACUUCCCAUU 20 4082
BCLllA-3598 + UGCUUUUU UCAUCUCGAUUG 20 4083
BCLllA-3599 - UGGAGCUCUAAUCCCCACGC 20 4084
BCLllA-3600 + UGGCACUGCCCACAGGU 17 4085
BCLllA-3601 - UGGCAUCCAGGUCACGC 17 4086
BCLllA-3602 + UGGGGUUUGCCUUGCUUGCG 20 4087
BCLllA-3603 - UUAUUUUUAUCGAGCACAAA 20 4088
BCLllA-3604 + U UCAUCUCGAUUGGUGA 17 4089
BCLllA-3605 - UUGGCAUCCAGGUCACGCCA 20 4090
BCLllA-3606 + UUGUGCUCGAUAAAAAU 17 4091
BCLllA-3607 + UUUCAUCUCGAUUGGUG 17 4092
BCLllA-3608 + UUUCAUCUCGAUUGGUGAAG 20 4093
BCLllA-3609 + UUUUCAUCUCGAUUGGUGAA 20 4094
BCLllA-3610 - U UUUUAUCGAGCACAAA 17 4095
BCLllA-3611 + U UUUUCAUCUCGAUUGGUGA 20 4096
BCLllA-3612 + U UUUUUCAUCUCGAUUG 17 4097
BCLllA-3613 + UUUUUUCAUCUCGAUUGGUG 20 4098
Table 5E provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to fifth tier parameters. The targeting domains target outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene. Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 5E
Figure imgf000226_0001
BCLllA-3636 + UGCCGCAGAACUCGCAUGAC 20 4121
BCLllA-3637 + GAUACCAACCCGCGGGGUCA 20 4122
BCLllA-3638 + GGAUACCAACCCGCGGGGUC 20 4123
BCLllA-3639 + GGGAUACCAACCCGCGGGGU 20 4124
BCLllA-3640 - CCCCCACCGCAUAGAGCGCC 20 4125
BCLllA-3641 + GGUUGGGGUCGUUCUCGCUC 20 4126
BCLllA-3642 - GCACGCCCCAUAUUAGUGGU 20 4127
BCLllA-3643 - UAAGCGCAUCAAGCUCGAGA 20 4128
BCLllA-3644 + GUUCUCCGAGGAGUGCUCCG 20 4129
BCLllA-3645 + UCUCGAGCUUGAUGCGCUUA 20 4130
BCLllA-3646 - CUAAGCGCAUCAAGCUCGAG 20 4131
BCLllA-3647 - GUCGGAGCACUCCUCGGAGA 20 4132
BCLllA-3648 - UGGCCGCGGCUGCUCCCCGG 20 4133
BCLllA-3649 - CCCCACCGCAUAGAGCGCCU 20 4134
BCLllA-3650 + CCUGAAGGGAUACCAACCCG 20 4135
BCLllA-3651 - GCGCUUCUCCACACCGCCCG 20 4136
BCLllA-3652 - GCGCCCUGCCCGACGUCAUG 20 4137
BCLllA-3653 - AACCCGGCACCAGCGACU UG 20 4138
BCLllA-3654 + CUCUGGGUACUACGCCGAAU 20 4139
BCLllA-3655 + CCCGUUCUCCGGGAUCAGGU 20 4140
BCLllA-3656 - GAACGACCCCAACCUGAUCC 20 4141
BCLllA-3657 + ACGCCGAAUGGGGGUGUGUG 20 4142
BCLllA-3658 + GUCGCUGGUGCCGGGU UCCG 20 4143
BCLllA-3659 - CCCCGGGCGAGUCGGCCUCG 20 4144
BCLllA-3660 + CGGUGCACCACCAGGUUGCU 20 4145
BCLllA-3661 - GUCCACCACCGAGACAUCAC 20 4146
BCLllA-3662 - UUAAUGGCCGCGGCUGCUCC 20 4147
BCLllA-3663 + CUCUCUGGGUACUACGCCGA 20 4148
BCLllA-3664 + GCGCAAACUCCCGUUCUCCG 20 4149
BCLllA-3665 + CCCGGGCCCGGACCACUAAU 20 4150
BCLllA-3666 + GCCCCCAGGCGCUCUAUGCG 20 4151
BCLllA-3667 - AUCGCCU UUUGCCUCCUCGU 20 4152
BCLllA-3668 - CCUCGUCGGAGCACUCCUCG 20 4153
BCLllA-3669 + GAGCUUGAUGCGCUUAGAGA 20 4154
BCLllA-3670 + CCCCGUUCUCCGGGAUCAGG 20 4155
BCLllA-3671 - CGGCCGCGAUGCCCAACACG 20 4156
BCLllA-3672 + GCCCCCCGAGGCCGACUCGC 20 4157
BCLllA-3673 - CCCGGCCGCGAUGCCCAACA 20 4158
BCLllA-3674 - CUCCUCGUCGGAGCACUCCU 20 4159
BCLllA-3675 + GUCUCGGUGGUGGACUAAAC 20 4160
BCLllA-3676 + CCCCAGGCGCUCUAUGCGGU 20 4161
BCLllA-3677 + GGUCGCACAGGUUGCACUUG 20 4162 BCLllA-3678 + AGUCGCUGGUGCCGGGUUCC 20 4163
BCLllA-3679 - CCCGGUCAAGUCCAAGUCAU 20 4164
BCLllA-3680 - AGAACGACCCCAACCUGAUC 20 4165
BCLllA-3681 + UCCGUGUUGGGCAUCGCGGC 20 4166
BCLllA-3682 - CCUCCUCGUCGGAGCACUCC 20 4167
BCLllA-3683 - UCACU UGGACCCCCACCGCA 20 4168
BCLllA-3684 - CCCAACCUGAUCCCGGAGAA 20 4169
BCLllA-3685 - ACUACGGCUUCGGGCUGAGC 20 4170
BCLllA-3686 - U UUGCGCUUCUCCACACCGC 20 4171
BCLllA-3687 + AAGUCGCUGGUGCCGGGUUC 20 4172
BCLllA-3688 - CCCCAACCUGAUCCCGGAGA 20 4173
BCLllA-3689 - AAGACUCGGUGGCCGGCGAG 20 4174
BCLllA-3690 - GCGCGGCCACCUGGCCGAGG 20 4175
BCLllA-3691 - AAUCGCCUUU UGCCUCCUCG 20 4176
BCLllA-3692 - ACGACCCCAACCUGAUCCCG 20 4177
BCLllA-3693 - GAUCCCGGAGAACGGGGACG 20 4178
BCLllA-3694 + GGGGCAGGUCGAACUCCUUC 20 4179
BCLllA-3695 - UGGCUAUGGAGCCUCCCGCC 20 4180
BCLllA-3696 + CCCCCAGGCGCUCUAUGCGG 20 4181
BCLllA-3697 - GCGGU UGAAUCCAAUGGCUA 20 4182
BCLllA-3698 - CUACGGCU UCGGGCUGAGCC 20 4183
BCLllA-3699 - ACAGCUCGCGGGGCGCGGUC 20 4184
BCLllA-3700 - CCCCCCUGU UUAGUCCACCA 20 4185
BCLllA-3701 + CGCAUGACUUGGACUUGACC 20 4186
BCLllA-3702 - CACGGAAGUCCCCUGACCCC 20 4187
BCLllA-3703 - CCUCCCGCCAUGGAU UUCUC 20 4188
BCLllA-3704 + UCUCGGUGGUGGACUAAACA 20 4189
BCLllA-3705 + UGAACUUGGCCACCACGGAC 20 4190
BCLllA-3706 - CUUCUCUAAGCGCAUCAAGC 20 4191
BCLllA-3707 + AGCGCAAACUCCCGUUCUCC 20 4192
BCLllA-3708 + UCGGUGGUGGACUAAACAGG 20 4193
BCLllA-3709 - CGCCACCACGAGAACAGCUC 20 4194
BCLllA-3710 - CUCCCGCCAUGGAU UUCUCU 20 4195
BCLllA-3711 + CGAGCU UGAUGCGCUUAGAG 20 4196
BCLllA-3712 + AUGCCCUGCAUGACGUCGGG 20 4197
BCLllA-3713 - UCUCUAAGCGCAUCAAGCUC 20 4198
BCLllA-3714 + GUCCAAGUGAUGUCUCGGUG 20 4199
BCLllA-3715 + CCCCCGAGGCCGACUCGCCC 20 4200
BCLllA-3716 + CCCCGAGGCCGACUCGCCCG 20 4201
BCLllA-3717 + GAAAUUUGAACGUCUUGCCG 20 4202
BCLllA-3718 + GUCGCUGCGUCUGCCCUCUU 20 4203
BCLllA-3719 - UGGAGGCGGCGCGCCACCAC 20 4204 BCLllA-3720 + CUUCUCGAGCUUGAUGCGCU 20 4205
BCLllA-3721 + GAAGCGCAAACUCCCGUUCU 20 4206
BCLllA-3722 - GAGAGAGGCUUCCGGCCUGG 20 4207
BCLllA-3723 - UCCCCGGGCGAGUCGGCCUC 20 4208
BCLllA-3724 + CAAGUCGCUGGUGCCGGGUU 20 4209
BCLllA-3725 - CAUAGAGCGCCUGGGGGCGG 20 4210
BCLllA-3726 + CUCGGUGGUGGACUAAACAG 20 4211
BCLllA-3727 + CCCCCCGAGGCCGACUCGCC 20 4212
BCLllA-3728 - GGUUUCUCUUGCAACACGCA 20 4213
BCLllA-3729 + ACUUGGACUUGACCGGGGGC 20 4214
BCLllA-3730 - UGAUCCCGGAGAACGGGGAC 20 4215
BCLllA-3731 + UGUCUGGAGUCUCCGAAGCU 20 4216
BCLllA-3732 - AUGGAUUUCUCUAGGAGACU 20 4217
BCLllA-3733 - UGCGGUUGAAUCCAAUGGCU 20 4218
BCLllA-3734 - CUCCCCGGGCGAGUCGGCCU 20 4219
BCLllA-3735 - CCUGAUCCCGGAGAACGGGG 20 4220
BCLllA-3736 + UGUCUCGGUGGUGGACUAAA 20 4221
BCLllA-3737 + CGGUGGUGGACUAAACAGGG 20 4222
BCLllA-3738 + UGCCCACCAAGUCGCUGGUG 20 4223
BCLllA-3739 - CGUGGUGGCCAAGUUCAAGA 20 4224
BCLllA-3740 - CAUCACCCGAGUGCCUUUGA 20 4225
BCLllA-3741 - GCGGCAAGACGUUCAAAUUU 20 4226
BCLllA-3742 + AAGGGCUCUCGAGCUUCCAU 20 4227
BCLllA-3743 + GUCUGGAGUCUCCGAAGCUA 20 4228
BCLllA-3744 - CCCCGGCCGCGAUGCCCAAC 20 4229
BCLllA-3745 + CUGUCAAAGGCACUCGGGUG 20 4230
BCLllA-3746 + CUUGGACUUGACCGGGGGCU 20 4231
BCLllA-3747 + GACUUGGACUUGACCGGGGG 20 4232
BCLllA-3748 + UGCGUCUGCCCUCUUU UGAG 20 4233
BCLllA-3749 + GGAGGCAAAAGGCGAUUGUC 20 4234
BCLllA-3750 - GCAACACGCACAGAACACUC 20 4235
BCLllA-3751 + GCAGUAACCUUUGCAUAGGG 20 4236
BCLllA-3752 - UGGUGCACCGGCGCAGCCAC 20 4237
BCLllA-3753 - UGGUGGCCAAGUUCAAGAGC 20 4238
BCLllA-3754 - GCAUAAGCGCGGCCACCUGG 20 4239
BCLllA-3755 + U UGCAUAGGGCUGGGCCGGC 20 4240
BCLllA-3756 - CCAACCUGAUCCCGGAGAAC 20 4241
BCLllA-3757 - AGAUGUGUGGCAGUUU UCGG 20 4242
BCLllA-3758 - CAGUUUUCGGAUGGAAGCUC 20 4243
BCLllA-3759 - GCUCCCCGGGCGAGUCGGCC 20 4244
BCLllA-3760 - GGGUGGACUACGGCUUCGGG 20 4245
BCLllA-3761 - UAUCCCUUCAGGACUAGGUG 20 4246 BCLllA-3762 - AUCUCGGGGCGCAGCGGCAC 20 4247
BCLllA-3763 + CGCUCU UGAACUUGGCCACC 20 4248
BCLllA-3764 - GCACCGGCGCAGCCACACGG 20 4249
BCLllA-3765 + GCUUCUCGCCCAGGACCUGG 20 4250
BCLllA-3766 - UCCCGGAGAACGGGGACGAG 20 4251
BCLllA-3767 + C AG CACCCUGU CAAAG G CAC 20 4252
BCLllA-3768 + CAUUCUGCACCUAGUCCUGA 20 4253
BCLllA-3769 - CUUUAACCUGCUAAGAAUAC 20 4254
BCLllA-3770 - GUCUCUCCACCGCCAGCUCC 20 4255
BCLllA-3771 - UCUCUCCACCGCCAGCUCCC 20 4256
BCLllA-3772 + UGCUUCUCGCCCAGGACCUG 20 4257
BCLllA-3773 + GCGCCGCCUCCAGGCUCAGC 20 4258
BCLllA-3774 + AGAUCCCUCCGUCCAGCUCC 20 4259
BCLllA-3775 - CGAGAGGGUGGACUACGGCU 20 4260
BCLllA-3776 + CGUCCAGCUCCCCGGGCGGU 20 4261
BCLllA-3777 + CCAGCUCUCUAAGUCUCCUA 20 4262
BCLllA-3778 + UCGCAUGACU UGGACU UGAC 20 4263
BCLllA-3779 + GCACCAUGCCCUGCAUGACG 20 4264
BCLllA-3780 + AAGGCGAUUGUCUGGAGUCU 20 4265
BCLllA-3781 + GCCUGGAGGCCGCGUAGCCG 20 4266
BCLllA-3782 - GCGGCCACCUGGCCGAGGCC 20 4267
BCLllA-3783 - AGAAUACCAGGAUCAGUAUC 20 4268
BCLllA-3784 - GAUGUGUGGCAGUU UUCGGA 20 4269
BCLllA-3785 - UCUCCACACCGCCCGGGGAG 20 4270
BCLllA-3786 - CCUGGAGGCGGCGCGCCACC 20 4271
BCLllA-3787 + CUGGUAUUCUUAGCAGGUUA 20 4272
BCLllA-3788 + UAGAGAAGGGGCUCAGCGAG 20 4273
BCLllA-3789 + GAGUGUUCUGUGCGUGUUGC 20 4274
BCLllA-3790 - AAUAACCCCUUUAACCUGCU 20 4275
BCLllA-3791 + AAAGCGCCCUUCUGCCAGGC 20 4276
BCLllA-3792 + GUCCAGCUCCCCGGGCGGUG 20 4277
BCLllA-3793 + AAGGGCGGCUUGCUACCUGG 20 4278
BCLllA-3794 + GAAAGCGCCCUUCUGCCAGG 20 4279
BCLllA-3795 + AGGGCGGCUUGCUACCUGGC 20 4280
BCLllA-3796 - CGCGGGGCGCGGUCGUGGGC 20 4281
BCLllA-3797 - GCGAGGCCU UCCACCAGGUC 20 4282
BCLllA-3798 + ACUUCCCGUGCCGCUGCGCC 20 4283
BCLllA-3799 - GCACAGAACACUCAUGGAUU 20 4284
BCLllA-3800 + CCAGCUCCCCGGGCGGUGUG 20 4285
BCLllA-3801 - ACCGCCCGGGGAGCUGGACG 20 4286
BCLllA-3802 + UGGUUGCAGUAACCUU UGCA 20 4287
BCLllA-3803 - AGGAGACUUAGAGAGCUGGC 20 4288 BCLllA-3804 - ACCGGCGCAGCCACACGGGC 20 4289
BCLllA-3805 + ACAUUCUGCACCUAGUCCUG 20 4290
BCLllA-3806 + GUGUUCUGUGCGUGU UGCAA 20 4291
BCLllA-3807 - UGGCCCUGGCCACCCAUCAC 20 4292
BCLllA-3808 + UGCAUAGGGCUGGGCCGGCC 20 4293
BCLllA-3809 - AAUACCAGGAUCAGUAUCGA 20 4294
BCLllA-3810 + UCCUGAAGGGAUACCAACCC 20 4295
BCLllA-3811 + CUCCUAGAGAAAUCCAUGGC 20 4296
BCLllA-3812 + UGGCGGUGGAGAGACCGUCG 20 4297
BCLllA-3813 - GGAUUUCUCUAGGAGACUUA 20 4298
BCLllA-3814 + CUCGCAUGACUUGGACUUGA 20 4299
BCLllA-3815 - GAUCUCGGGGCGCAGCGGCA 20 4300
BCLllA-3816 + GGUGGUGGACUAAACAGGGG 20 4301
BCLllA-3817 + AGGCCUCGCUGAAGUGCUGC 20 4302
BCLllA-3818 + CCACCAGGU UGCUCUGAAAU 20 4303
BCLllA-3819 - ACCGCAUAGAGCGCCUGGGG 20 4304
BCLllA-3820 - CCAGCAAGCUGAAGCGCCAC 20 4305
BCLllA-3821 + GGCCUCGCUGAAGUGCUGCA 20 4306
BCLllA-3822 - CGUGCACCCAGGCCAGCAAG 20 4307
BCLllA-3823 + GGCGGGAGGCUCCAUAGCCA 20 4308
BCLllA-3824 + AGGAGGCAAAAGGCGAUUGU 20 4309
BCLllA-3825 - AAAGAUCCCUUCCUUAGCUU 20 4310
BCLllA-3826 + GGAGUCUCCGAAGCUAAGGA 20 4311
BCLllA-3827 + GCGCUUAGAGAAGGGGCUCA 20 4312
BCLllA-3828 + CAGCUUUUUGGACAGGCCCC 20 4313
BCLllA-3829 + GCACUCGGGUGAUGGGUGGC 20 4314
BCLllA-3830 + CACGCCCACGACCGCGCCCC 20 4315
BCLllA-3831 + AAGUUGUACAUGUGUAGCUG 20 4316
BCLllA-3832 - AGUCCGUGGUGGCCAAGUUC 20 4317
BCLllA-3833 - CCCGGAGAACGGGGACGAGG 20 4318
BCLllA-3834 - CGGGCAGGCCCAGCU C A A A A 20 4319
BCLllA-3835 + UGGUAUUCUUAGCAGGUUAA 20 4320
BCLllA-3836 + U UGUCUGCAAUAUGAAUCCC 20 4321
BCLllA-3837 + GUCUCCUAGAGAAAUCCAUG 20 4322
BCLllA-3838 + UGGACUUGACCGGGGGCUGG 20 4323
BCLllA-3839 + UGGAGUCUCCGAAGCUAAGG 20 4324
BCLllA-3840 + UGAGCUGGGCCUGCCCGGGC 20 4325
BCLllA-3841 - CAAAGAUCCCUUCCUUAGCU 20 4326
BCLllA-3842 + UGCCACACAUCUUGAGCUCU 20 4327
BCLllA-3843 - CCGCCCGGGGAGCUGGACGG 20 4328
BCLllA-3844 + AGAGAAGGGGCUCAGCGAGC 20 4329
BCLllA-3845 - GGAGACUUAGAGAGCUGGCA 20 4330 BCLllA-3846 + GAAUCCCAUGGAGAGGUGGC 20 4331
BCLllA-3847 + CGCUGAAGUGCUGCAUGGAG 20 4332
BCLllA-3848 + AGGACAUUCUGCACCUAGUC 20 4333
BCLllA-3849 + AAUCCCAUGGAGAGGUGGCU 20 4334
BCLllA-3850 + UGAGCUCUCUGGGUACUACG 20 4335
BCLllA-3851 - GGGCCACAGGGACACUUGCG 20 4336
BCLllA-3852 - UAGGAGACUUAGAGAGCUGG 20 4337
BCLllA-3853 - CCUUUGACAGGGUGCUGCGG 20 4338
BCLllA-3854 - UGGCCGAGGCCGAGGGCCAC 20 4339
BCLllA-3855 + GGAAGGGAUCUUUGAGCUGC 20 4340
BCLllA-3856 + UCUAAGUAGAUUCUUAAUCC 20 4341
BCLllA-3857 - GGGGCGCAGCGGCACGGGAA 20 4342
BCLllA-3858 - CUGGCCGAGGCCGAGGGCCA 20 4343
BCLllA-3859 - CUCAAGAUGUGUGGCAGUUU 20 4344
BCLllA-3860 + CGAAGCUAAGGAAGGGAUCU 20 4345
BCLllA-3861 + UGCCAGCUCUCUAAGUCUCC 20 4346
BCLllA-3862 + UCUCCUAGAGAAAUCCAUGG 20 4347
BCLllA-3863 - GCCACCACGAGAACAGCUCG 20 4348
BCLllA-3864 + UCUGCAAUAUGAAUCCCAUG 20 4349
BCLllA-3865 - CAGCUCCAUGCAGCACUUCA 20 4350
BCLllA-3866 - GCCUGUCCAAAAAGCUGCUG 20 4351
BCLllA-3867 - UAAGAAUACCAGGAUCAGUA 20 4352
BCLllA-3868 - GGAUCUCGGGGCGCAGCGGC 20 4353
BCLllA-3869 - GGCAGUUUUCGGAUGGAAGC 20 4354
BCLllA-3870 - CGGUCGUGGGCGUGGGCGAC 20 4355
BCLllA-3871 + GCAUCGCGGCCGGGGGCAGG 20 4356
BCLllA-3872 - AAUCUACUUAGAAAGCGAAC 20 4357
BCLllA-3873 + AAGGGGUUAUUGUCUGCAAU 20 4358
BCLllA-3874 + GGACUUGACCGGGGGCUGGG 20 4359
BCLllA-3875 - UCAUGGAUUAAGAAUCUACU 20 4360
BCLllA-3876 - AGAGGCUUCCGGCCUGGCAG 20 4361
BCLllA-3877 - GGCCUUCCACCAGGUCCUGG 20 4362
BCLllA-3878 + UGGCGCU UCAGCUUGCUGGC 20 4363
BCLllA-3879 - CCGCAUAGAGCGCCUGGGGG 20 4364
BCLllA-3880 + GGACCUGGUGGAAGGCCUCG 20 4365
BCLllA-3881 - CCUUCCACCAGGUCCUGGGC 20 4366
BCLllA-3882 + UGUCUGCAAUAUGAAUCCCA 20 4367
BCLllA-3883 - GGAGCUGGACGGAGGGAUCU 20 4368
BCLllA-3884 + GACUUGACCGGGGGCUGGGA 20 4369
BCLllA-3885 - UCCUUCCCAGCCACCUCUCC 20 4370
BCLllA-3886 + CUCU UUUGAGCUGGGCCUGC 20 4371
BCLllA-3887 - UGCGCUUCUCCACACCGCCC 20 4372 BCLllA-3888 + GCAAGAGAAACCAUGCACUG 20 4373
BCLllA-3889 - GGGAGCUGGACGGAGGGAUC 20 4374
BCLllA-3890 + GU UCCGGGGAGCUGGCGGUG 20 4375
BCLllA-3891 + UGAAUCCCAUGGAGAGGUGG 20 4376
BCLllA-3892 + CGGGU UCCGGGGAGCUGGCG 20 4377
BCLllA-3893 + GUGGACUAAACAGGGGGGGA 20 4378
BCLllA-3894 + GGCUGCCCAGCAGCAGCUUU 20 4379
BCLllA-3895 + GAAGGGAUCUUUGAGCUGCC 20 4380
BCLllA-3896 - CCUUCCCAGCCACCUCUCCA 20 4381
BCLllA-3897 - GCGCAGCGGCACGGGAAGUG 20 4382
BCLllA-3898 + GGGUUCCGGGGAGCUGGCGG 20 4383
BCLllA-3899 + UCCUCCUCGUCCCCGUUCUC 20 4384
BCLllA-3900 - GCAGCGGCACGGGAAGUGGA 20 4385
BCLllA-3901 - UGCUGGGCAGCCCCAGCUCG 20 4386
BCLllA-3902 - GGGCGCAGCGGCACGGGAAG 20 4387
BCLllA-3903 - ACACCGCCCGGGGAGCUGGA 20 4388
BCLllA-3904 + CCCAUGGAGAGGUGGCUGGG 20 4389
BCLllA-3905 + UUCCUCCUCGUCCCCGUUCU 20 4390
BCLllA-3906 - AUCUACUUAGAAAGCGAACA 20 4391
BCLllA-3907 - CCCGGGCAGGCCCAGCUCAA 20 4392
BCLllA-3908 - CACACCGCCCGGGGAGCUGG 20 4393
BCLllA-3909 + ACUAAACAGGGGGGGAGUGG 20 4394
BCLllA-3910 + GACCGGGGGCUGGGAGGGAG 20 4395
BCLllA-3911 + GGGCCGGCCUGGGGACAGCG 20 4396
BCLllA-3912 + GCAUAGGGCUGGGCCGGCCU 20 4397
BCLllA-3913 - AU U AAG AAU CU ACU U AG AAA 20 4398
BCLllA-3914 + CUAAACAGGGGGGGAGUGGG 20 4399
BCLllA-3915 + UUGACCGGGGGCUGGGAGGG 20 4400
BCLllA-3916 - CGCGGUCGUGGGCGUGGGCG 20 4401
BCLllA-3917 + GAGGGAGGGGGGGCGUCGCC 20 4402
BCLllA-3918 - GGAGAACGGGGACGAGGAGG 20 4403
BCLllA-3919 + CUUGACCGGGGGCUGGGAGG 20 4404
BCLllA-3920 + GGAGGGAGGGGGGGCGUCGC 20 4405
BCLllA-3921 + ACCGGGGGCUGGGAGGGAGG 20 4406
BCLllA-3922 - CGCAGCGGCACGGGAAGUGG 20 4407
BCLllA-3923 + GCGGAUUGCAGAGGAGGGAG 20 4408
BCLllA-3924 + GGAGGGGGGGCGUCGCCAGG 20 4409
BCLllA-3925 + GGCGGAUUGCAGAGGAGGGA 20 4410
BCLllA-3926 + GAGGGGCGGAUUGCAGAGGA 20 4411
BCLllA-3927 + GGGGCGGAUUGCAGAGGAGG 20 4412
BCLllA-3928 - GAGGAGCUGACGGAGAGCGA 20 4413
BCLllA-3929 + UCCGAAAACUGCCACACAUC 20 4414 BCLllA-3930 + CGGAUUGCAGAGGAGGGAGG 20 4415
BCLllA-3931 + GGAGGGGCGGAUUGCAGAGG 20 4416
BCLllA-3932 + GGGCGGAUUGCAGAGGAGGG 20 4417
BCLllA-3933 + AGGAGGGGCGGAUUGCAGAG 20 4418
BCLllA-3934 - AGAACGGGGACGAGGAGGAA 20 4419
BCLllA-3935 + GAGGGAGGAGGGGCGGAUUG 20 4420
BCLllA-3936 - UUGCGCUUCUCCACACCGCC 20 4421
BCLllA-3937 - AGCUGACGGAGAGCGAGAGG 20 4422
BCLllA-3938 - AGGAGGAGCUGACGGAGAGC 20 4423
BCLllA-3939 + GGGGCUGGGAGGGAGGAGGG 20 4424
BCLllA-3940 + GGGAGGAGGGGCGGAUUGCA 20 4425
BCLllA-3941 + CCGUGUUGGGCAUCGCGGCC 20 4426
BCLllA-3942 - GAACGGGGACGAGGAGGAAG 20 4427
BCLllA-3943 + GGAGGAGGGGCGGAUUGCAG 20 4428
BCLllA-3944 - GGAGGAGGAGCUGACGGAGA 20 4429
BCLllA-3945 - ACGGGGACGAGGAGGAAGAG 20 4430
BCLllA-3946 - AGGAGGAGGAGGAGCUGACG 20 4431
BCLllA-3947 - ACGACGAGGAAGAGGAAGAA 20 4432
BCLllA-3948 - ACGAGGAAGAGGAAGAAGAG 20 4433
BCLllA-3949 - AGGAGGAAGAGGAGGACGAC 20 4434
BCLllA-3950 - AAGAGGAGGACGACGAGGAA 20 4435
BCLllA-3951 - AGAGGAGGAGGAGGAGCUGA 20 4436
BCLllA-3952 - GGAGGAAGAGGAGGACGACG 20 4437
BCLllA-3953 - CGAGGAGGAAGAGGAGGACG 20 4438
BCLllA-3954 - CGAGGAAGAGGAAGAAGAGG 20 4439
BCLllA-3955 - AAGAGGAGGAGGAGGAGCUG 20 4440
BCLllA-3956 - CGACGAGGAAGAGGAAGAAG 20 4441
BCLllA-3957 - GGAGGACGACGAGGAAGAGG 20 4442
BCLllA-3958 - AGAGGAGGACGACGAGGAAG 20 4443
BCLllA-3959 - GGACGACGAGGAAGAGGAAG 20 4444
BCLllA-3960 - GGAAGAGGAGGACGACGAGG 20 4445
BCLllA-3961 - AGGAAGAAGAGGAGGAAGAG 20 4446
BCLllA-3962 - AAGAGGAAGAAGAGGAGGAA 20 4447
BCLllA-3963 - GGAAGAGGAAGAAGAGGAGG 20 4448
BCLllA-3964 - AAGAAGAGGAGGAAGAGGAG 20 4449
BCLllA-3965 - AAGAGGAGGAAGAGGAGGAG 20 4450
BCLllA-3966 - AGAGGAAGAAGAGGAGGAAG 20 4451
BCLllA-3967 - GGAAGAAGAGGAGGAAGAGG 20 4452
BCLllA-3968 - AGAAGAGGAGGAAGAGGAGG 20 4453
BCLllA-3969 - AGAGGAGGAAGAGGAGGAGG 20 4454
BCLllA-3970 + UCGGACUUGACCGUCAU 17 4455
BCLllA-3971 + GUCGGACUUGACCGUCA 17 4456 BCLllA-3972 + CGUCGGACU UGACCGUC 17 4457
BCLllA-3973 + CGGACUUGACCGUCAUG 17 4458
BCLllA-3974 - AUAUUAGUGGUCCGGGC 17 4459
BCLllA-3975 + GUCCGACUCGCCGGCCA 17 4460
BCLllA-3976 + CGAGGAGUGCUCCGACG 17 4461
BCLllA-3977 - CCAUUCGGCGUAGUACC 17 4462
BCLllA-3978 + CCGAGGAGUGCUCCGAC 17 4463
BCLllA-3979 - GCGGGUUGGUAUCCCUU 17 4464
BCLllA-3980 + AGUACACGUUCUCCGUG 17 4465
BCLllA-3981 - AUUCGGCGUAGUACCCA 17 4466
BCLllA-3982 + CGUGUUGGGCAUCGCGG 17 4467
BCLllA-3983 + CGCUUAUGCUUCUCGCC 17 4468
BCLllA-3984 - CGAAGACUCGGUGGCCG 17 4469
BCLllA-3985 - CCCACCGCAUAGAGCGC 17 4470
BCLllA-3986 + ACGCCGAAUGGGGGUGU 17 4471
BCLllA-3987 + GGCCCGGACCACUAAUA 17 4472
BCLllA-3988 + GUAGCCGGCGAGCCACU 17 4473
BCLllA-3989 - GAGCACUCCUCGGAGAA 17 4474
BCLllA-3990 - AGCACUCCUCGGAGAAC 17 4475
BCLllA-3991 + CUGGGUACUACGCCGAA 17 4476
BCLllA-3992 + CGCAGAACUCGCAUGAC 17 4477
BCLllA-3993 + ACCAACCCGCGGGGUCA 17 4478
BCLllA-3994 + UACCAACCCGCGGGGUC 17 4479
BCLllA-3995 + AUACCAACCCGCGGGGU 17 4480
BCLllA-3996 - CCACCGCAUAGAGCGCC 17 4481
BCLllA-3997 + UGGGGUCGUUCUCGCUC 17 4482
BCLllA-3998 - CGCCCCAUAU UAGUGGU 17 4483
BCLllA-3999 - GCGCAUCAAGCUCGAGA 17 4484
BCLllA-4000 + CUCCGAGGAGUGCUCCG 17 4485
BCLllA-4001 + CGAGCU UGAUGCGCUUA 17 4486
BCLllA-4002 - AGCGCAUCAAGCUCGAG 17 4487
BCLllA-4003 - GGAGCACUCCUCGGAGA 17 4488
BCLllA-4004 - CCGCGGCUGCUCCCCGG 17 4489
BCLllA-4005 - CACCGCAUAGAGCGCCU 17 4490
BCLllA-4006 + GAAGGGAUACCAACCCG 17 4491
BCLllA-4007 - CUUCUCCACACCGCCCG 17 4492
BCLllA-4008 - CCCUGCCCGACGUCAUG 17 4493
BCLllA-4009 - CCGGCACCAGCGACU UG 17 4494
BCLllA-4010 + UGGGUACUACGCCGAAU 17 4495
BCLllA-4011 + GU UCUCCGGGAUCAGGU 17 4496
BCLllA-4012 - CGACCCCAACCUGAUCC 17 4497
BCLllA-4013 + CCGAAUGGGGGUGUGUG 17 4498 BCLllA-4014 + GCUGGUGCCGGGUUCCG 17 4499
BCLllA-4015 - CGGGCGAGUCGGCCUCG 17 4500
BCLllA-4016 + UGCACCACCAGGUUGCU 17 4501
BCLllA-4017 - CACCACCGAGACAUCAC 17 4502
BCLllA-4018 - AUGGCCGCGGCUGCUCC 17 4503
BCLllA-4019 + UCUGGGUACUACGCCGA 17 4504
BCLllA-4020 + CAAACUCCCGUUCUCCG 17 4505
BCLllA-4021 + GGGCCCGGACCACUAAU 17 4506
BCLllA-4022 + CCCAGGCGCUCUAUGCG 17 4507
BCLllA-4023 - GCCUUU UGCCUCCUCGU 17 4508
BCLllA-4024 - CGUCGGAGCACUCCUCG 17 4509
BCLllA-4025 + CUUGAUGCGCUUAGAGA 17 4510
BCLllA-4026 + CGU UCUCCGGGAUCAGG 17 4511
BCLllA-4027 - CCGCGAUGCCCAACACG 17 4512
BCLllA-4028 + CCCCGAGGCCGACUCGC 17 4513
BCLllA-4029 - GGCCGCGAUGCCCAACA 17 4514
BCLllA-4030 - CUCGUCGGAGCACUCCU 17 4515
BCLllA-4031 + UCGGUGGUGGACUAAAC 17 4516
BCLllA-4032 + CAGGCGCUCUAUGCGGU 17 4517
BCLllA-4033 + CGCACAGGUUGCACUUG 17 4518
BCLllA-4034 + CGCUGGUGCCGGGUUCC 17 4519
BCLllA-4035 - GGUCAAGUCCAAGUCAU 17 4520
BCLllA-4036 - ACGACCCCAACCUGAUC 17 4521
BCLllA-4037 + GUGUUGGGCAUCGCGGC 17 4522
BCLllA-4038 - CCUCGUCGGAGCACUCC 17 4523
BCLllA-4039 - CUUGGACCCCCACCGCA 17 4524
BCLllA-4040 - AACCUGAUCCCGGAGAA 17 4525
BCLllA-4041 - ACGGCUUCGGGCUGAGC 17 4526
BCLllA-4042 - GCGCUUCUCCACACCGC 17 4527
BCLllA-4043 + UCGCUGGUGCCGGGUUC 17 4528
BCLllA-4044 - CAACCUGAUCCCGGAGA 17 4529
BCLllA-4045 - ACUCGGUGGCCGGCGAG 17 4530
BCLllA-4046 - CGGCCACCUGGCCGAGG 17 4531
BCLllA-4047 - CGCCUUU UGCCUCCUCG 17 4532
BCLllA-4048 - ACCCCAACCUGAUCCCG 17 4533
BCLllA-4049 - CCCGGAGAACGGGGACG 17 4534
BCLllA-4050 + GCAGGUCGAACUCCUUC 17 4535
BCLllA-4051 - CUAUGGAGCCUCCCGCC 17 4536
BCLllA-4052 + CCAGGCGCUCUAUGCGG 17 4537
BCLllA-4053 - GUUGAAUCCAAUGGCUA 17 4538
BCLllA-4054 - CGGCUUCGGGCUGAGCC 17 4539
BCLllA-4055 - GCUCGCGGGGCGCGGUC 17 4540 BCLllA-4056 - CCCUGU UUAGUCCACCA 17 4541
BCLllA-4057 + AUGACUUGGACUUGACC 17 4542
BCLllA-4058 - GGAAGUCCCCUGACCCC 17 4543
BCLllA-4059 - CCCGCCAUGGAUUUCUC 17 4544
BCLllA-4060 + CGGUGGUGGACUAAACA 17 4545
BCLllA-4061 + ACU UGGCCACCACGGAC 17 4546
BCLllA-4062 - CUCUAAGCGCAUCAAGC 17 4547
BCLllA-4063 + GCAAACUCCCGUUCUCC 17 4548
BCLllA-4064 + GUGGUGGACUAAACAGG 17 4549
BCLllA-4065 - CACCACG AG AACAG CU C 17 4550
BCLllA-4066 - CCGCCAUGGAUUUCUCU 17 4551
BCLllA-4067 + GCUUGAUGCGCUUAGAG 17 4552
BCLllA-4068 + CCCUGCAUGACGUCGGG 17 4553
BCLllA-4069 - CUAAGCGCAUCAAGCUC 17 4554
BCLllA-4070 + CAAGUGAUGUCUCGGUG 17 4555
BCLllA-4071 + CCGAGGCCGACUCGCCC 17 4556
BCLllA-4072 + CGAGGCCGACUCGCCCG 17 4557
BCLllA-4073 + AUUUGAACGUCUUGCCG 17 4558
BCLllA-4074 + GCUGCGUCUGCCCUCU U 17 4559
BCLllA-4075 - AGGCGGCGCGCCACCAC 17 4560
BCLllA-4076 + CUCGAGCU UGAUGCGCU 17 4561
BCLllA-4077 + GCGCAAACUCCCGUUCU 17 4562
BCLllA-4078 - AGAGGCUUCCGGCCUGG 17 4563
BCLllA-4079 - CCGGGCGAGUCGGCCUC 17 4564
BCLllA-4080 + GUCGCUGGUGCCGGGUU 17 4565
BCLllA-4081 - AGAGCGCCUGGGGGCGG 17 4566
BCLllA-4082 + GGUGGUGGACUAAACAG 17 4567
BCLllA-4083 + CCCGAGGCCGACUCGCC 17 4568
BCLllA-4084 - U UCUCUUGCAACACGCA 17 4569
BCLllA-4085 + UGGACUUGACCGGGGGC 17 4570
BCLllA-4086 - UCCCGGAGAACGGGGAC 17 4571
BCLllA-4087 + CUGGAGUCUCCGAAGCU 17 4572
BCLllA-4088 - GAUUUCUCUAGGAGACU 17 4573
BCLllA-4089 - GGUUGAAUCCAAUGGCU 17 4574
BCLllA-4090 - CCCGGGCGAGUCGGCCU 17 4575
BCLllA-4091 - GAUCCCGGAGAACGGGG 17 4576
BCLllA-4092 + CUCGGUGGUGGACUAAA 17 4577
BCLllA-4093 + UGGUGGACUAAACAGGG 17 4578
BCLllA-4094 + CCACCAAGUCGCUGGUG 17 4579
BCLllA-4095 - GGUGGCCAAGUUCAAGA 17 4580
BCLllA-4096 - CACCCGAGUGCCUU UGA 17 4581
BCLllA-4097 - GCAAGACG U U CAAAU U U 17 4582 BCLllA-4098 + GGCUCUCGAGCUUCCAU 17 4583
BCLllA-4099 + UGGAGUCUCCGAAGCUA 17 4584
BCLllA-4100 - CGGCCGCGAUGCCCAAC 17 4585
BCLllA-4101 + UCAAAGGCACUCGGGUG 17 4586
BCLllA-4102 + GGACUUGACCGGGGGCU 17 4587
BCLllA-4103 + UUGGACUUGACCGGGGG 17 4588
BCLllA-4104 + GUCUGCCCUCU UUUGAG 17 4589
BCLllA-4105 + GGCAAAAGGCGAUUGUC 17 4590
BCLllA-4106 - ACACGCACAGAACACUC 17 4591
BCLllA-4107 + GUAACCUUUGCAUAGGG 17 4592
BCLllA-4108 - UGCACCGGCGCAGCCAC 17 4593
BCLllA-4109 - UGGCCAAG U U CAAG AG C 17 4594
BCLllA-4110 - UAAGCGCGGCCACCUGG 17 4595
BCLllA-4111 + CAUAGGGCUGGGCCGGC 17 4596
BCLllA-4112 - ACCUGAUCCCGGAGAAC 17 4597
BCLllA-4113 - UGUGUGGCAGUUUUCGG 17 4598
BCLllA-4114 - U UUUCGGAUGGAAGCUC 17 4599
BCLllA-4115 - CCCCGGGCGAGUCGGCC 17 4600
BCLllA-4116 - UGGACUACGGCUUCGGG 17 4601
BCLllA-4117 - CCCUUCAGGACUAGGUG 17 4602
BCLllA-4118 - UCGGGGCGCAGCGGCAC 17 4603
BCLllA-4119 + UCU UGAACUUGGCCACC 17 4604
BCLllA-4120 - CCGGCGCAGCCACACGG 17 4605
BCLllA-4121 + UCUCGCCCAGGACCUGG 17 4606
BCLllA-4122 - CGGAGAACGGGGACGAG 17 4607
BCLllA-4123 + CACCCUGUCAAAGGCAC 17 4608
BCLllA-4124 + UCUGCACCUAGUCCUGA 17 4609
BCLllA-4125 - UAACCUGCUAAGAAUAC 17 4610
BCLllA-4126 - UCUCCACCGCCAGCUCC 17 4611
BCLllA-4127 - CUCCACCGCCAGCUCCC 17 4612
BCLllA-4128 + U UCUCGCCCAGGACCUG 17 4613
BCLllA-4129 + CCGCCUCCAGGCUCAGC 17 4614
BCLllA-4130 + UCCCUCCGUCCAGCUCC 17 4615
BCLllA-4131 - GAGGGUGGACUACGGCU 17 4616
BCLllA-4132 + CCAGCUCCCCGGGCGGU 17 4617
BCLllA-4133 + GCUCUCUAAGUCUCCUA 17 4618
BCLllA-4134 + CAUGACUUGGACUUGAC 17 4619
BCLllA-4135 + CCAUGCCCUGCAUGACG 17 4620
BCLllA-4136 + GCGAUUGUCUGGAGUCU 17 4621
BCLllA-4137 + UGGAGGCCGCGUAGCCG 17 4622
BCLllA-4138 - GCCACCUGGCCGAGGCC 17 4623
BCLllA-4139 - AUACCAGGAUCAGUAUC 17 4624 BCLllA-4140 - GUGUGGCAGUUU UCGGA 17 4625
BCLllA-4141 - CCACACCGCCCGGGGAG 17 4626
BCLllA-4142 - GGAGGCGGCGCGCCACC 17 4627
BCLllA-4143 + GUAUUCUUAGCAGGUUA 17 4628
BCLllA-4144 + AGAAGGGGCUCAGCGAG 17 4629
BCLllA-4145 + UGUUCUGUGCGUGUUGC 17 4630
BCLllA-4146 - AACCCCUU UAACCUGCU 17 4631
BCLllA-4147 + GCGCCCUUCUGCCAGGC 17 4632
BCLllA-4148 + CAGCUCCCCGGGCGGUG 17 4633
BCLllA-4149 + GGCGGCU UGCUACCUGG 17 4634
BCLllA-4150 + AGCGCCCUUCUGCCAGG 17 4635
BCLllA-4151 + GCGGCUUGCUACCUGGC 17 4636
BCLllA-4152 - GGGGCGCGGUCGUGGGC 17 4637
BCLllA-4153 - AGGCCUUCCACCAGGUC 17 4638
BCLllA-4154 + UCCCGUGCCGCUGCGCC 17 4639
BCLllA-4155 - CAGAACACUCAUGGAUU 17 4640
BCLllA-4156 + GCUCCCCGGGCGGUGUG 17 4641
BCLllA-4157 - GCCCGGGGAGCUGGACG 17 4642
BCLllA-4158 + U UGCAGUAACCU UUGCA 17 4643
BCLllA-4159 - AGACUUAGAGAGCUGGC 17 4644
BCLllA-4160 - GGCGCAGCCACACGGGC 17 4645
BCLllA-4161 + U UCUGCACCUAGUCCUG 17 4646
BCLllA-4162 + UUCUGUGCGUGUUGCAA 17 4647
BCLllA-4163 - CCCUGGCCACCCAUCAC 17 4648
BCLllA-4164 + AUAGGGCUGGGCCGGCC 17 4649
BCLllA-4165 - ACCAGGAUCAGUAUCGA 17 4650
BCLllA-4166 + UGAAGGGAUACCAACCC 17 4651
BCLllA-4167 + CUAGAGAAAUCCAUGGC 17 4652
BCLllA-4168 + CGGUGGAGAGACCGUCG 17 4653
BCLllA-4169 - U UUCUCUAGGAGACUUA 17 4654
BCLllA-4170 + GCAUGACUUGGACUUGA 17 4655
BCLllA-4171 - CUCGGGGCGCAGCGGCA 17 4656
BCLllA-4172 + GGUGGACUAAACAGGGG 17 4657
BCLllA-4173 + CCUCGCUGAAGUGCUGC 17 4658
BCLllA-4174 + CCAGGU UGCUCUGAAAU 17 4659
BCLllA-4175 - GCAUAGAGCGCCUGGGG 17 4660
BCLllA-4176 - GCAAGCUGAAGCGCCAC 17 4661
BCLllA-4177 + CUCGCUGAAGUGCUGCA 17 4662
BCLllA-4178 - GCACCCAGGCCAGCAAG 17 4663
BCLllA-4179 + GGGAGGCUCCAUAGCCA 17 4664
BCLllA-4180 + AGGCAAAAGGCGAUUGU 17 4665
BCLllA-4181 - GAUCCCU UCCUUAGCUU 17 4666 BCLllA-4182 + GUCUCCGAAGCUAAGGA 17 4667
BCLllA-4183 + CUUAGAGAAGGGGCUCA 17 4668
BCLllA-4184 + CUU UUUGGACAGGCCCC 17 4669
BCLllA-4185 + CUCGGGUGAUGGGUGGC 17 4670
BCLllA-4186 + GCCCACGACCGCGCCCC 17 4671
BCLllA-4187 + UUGUACAUGUGUAGCUG 17 4672
BCLllA-4188 - CCGUGGUGGCCAAGUUC 17 4673
BCLllA-4189 - GGAGAACGGGGACGAGG 17 4674
BCLllA-4190 - GCAGGCCCAGCU C A A A A 17 4675
BCLllA-4191 + UAUUCUUAGCAGGUUAA 17 4676
BCLllA-4192 + UCUGCAAUAUGAAUCCC 17 4677
BCLllA-4193 + UCCUAGAGAAAUCCAUG 17 4678
BCLllA-4194 + ACUUGACCGGGGGCUGG 17 4679
BCLllA-4195 + AGUCUCCGAAGCUAAGG 17 4680
BCLllA-4196 + GCUGGGCCUGCCCGGGC 17 4681
BCLllA-4197 - AGAUCCCUUCCUUAGCU 17 4682
BCLllA-4198 + CACACAUCUUGAGCUCU 17 4683
BCLllA-4199 - CCCGGGGAGCUGGACGG 17 4684
BCLllA-4200 + GAAGGGGCUCAGCGAGC 17 4685
BCLllA-4201 - GACUUAGAGAGCUGGCA 17 4686
BCLllA-4202 + UCCCAUGGAGAGGUGGC 17 4687
BCLllA-4203 + UGAAGUGCUGCAUGGAG 17 4688
BCLllA-4204 + ACAUUCUGCACCUAGUC 17 4689
BCLllA-4205 + CCCAUGGAGAGGUGGCU 17 4690
BCLllA-4206 + GCUCUCUGGGUACUACG 17 4691
BCLllA-4207 - CCACAGGGACACUUGCG 17 4692
BCLllA-4208 - GAGACUUAGAGAGCUGG 17 4693
BCLllA-4209 - UUGACAGGGUGCUGCGG 17 4694
BCLllA-4210 - CCGAGGCCGAGGGCCAC 17 4695
BCLllA-4211 + AGGGAUCUUUGAGCUGC 17 4696
BCLllA-4212 + AAGUAGAUUCUUAAUCC 17 4697
BCLllA-4213 - GCGCAGCGGCACGGGAA 17 4698
BCLllA-4214 - GCCGAGGCCGAGGGCCA 17 4699
BCLllA-4215 - AAGAUGUGUGGCAGUUU 17 4700
BCLllA-4216 + AGCUAAGGAAGGGAUCU 17 4701
BCLllA-4217 + CAGCUCUCUAAGUCUCC 17 4702
BCLllA-4218 + CCUAGAGAAAUCCAUGG 17 4703
BCLllA-4219 - ACCACGAGAACAGCUCG 17 4704
BCLllA-4220 + GCAAUAUGAAUCCCAUG 17 4705
BCLllA-4221 - CUCCAUGCAGCACUUCA 17 4706
BCLllA-4222 - UGUCCAAAAAGCUGCUG 17 4707
BCLllA-4223 - GAAUACCAGGAUCAGUA 17 4708 BCLllA-4224 - UCUCGGGGCGCAGCGGC 17 4709
BCLllA-4225 - AGUUUUCGGAUGGAAGC 17 4710
BCLllA-4226 - UCGUGGGCGUGGGCGAC 17 4711
BCLllA-4227 + UCGCGGCCGGGGGCAGG 17 4712
BCLllA-4228 - CUACUUAGAAAGCGAAC 17 4713
BCLllA-4229 + GGGUUAUUGUCUGCAAU 17 4714
BCLllA-4230 + CUUGACCGGGGGCUGGG 17 4715
BCLllA-4231 - UGGAUUAAGAAUCUACU 17 4716
BCLllA-4232 - GGCUUCCGGCCUGGCAG 17 4717
BCLllA-4233 - CUUCCACCAGGUCCUGG 17 4718
BCLllA-4234 + CGCUUCAGCUUGCUGGC 17 4719
BCLllA-4235 - CAUAGAGCGCCUGGGGG 17 4720
BCLllA-4236 + CCUGGUGGAAGGCCUCG 17 4721
BCLllA-4237 - UCCACCAGGUCCUGGGC 17 4722
BCLllA-4238 + CUGCAAUAUGAAUCCCA 17 4723
BCLllA-4239 - GCUGGACGGAGGGAUCU 17 4724
BCLllA-4240 + UUGACCGGGGGCUGGGA 17 4725
BCLllA-4241 - UUCCCAGCCACCUCUCC 17 4726
BCLllA-4242 + U UUUGAGCUGGGCCUGC 17 4727
BCLllA-4243 - GCUUCUCCACACCGCCC 17 4728
BCLllA-4244 + AGAGAAACCAUGCACUG 17 4729
BCLllA-4245 - AGCUGGACGGAGGGAUC 17 4730
BCLllA-4246 + CCGGGGAGCUGGCGGUG 17 4731
BCLllA-4247 + AUCCCAUGGAGAGGUGG 17 4732
BCLllA-4248 + GUUCCGGGGAGCUGGCG 17 4733
BCLllA-4249 + GACUAAACAGGGGGGGA 17 4734
BCLllA-4250 + UGCCCAGCAGCAGCUU U 17 4735
BCLllA-4251 + GGGAUCUUUGAGCUGCC 17 4736
BCLllA-4252 - UCCCAGCCACCUCUCCA 17 4737
BCLllA-4253 - CAGCGGCACGGGAAGUG 17 4738
BCLllA-4254 + U UCCGGGGAGCUGGCGG 17 4739
BCLllA-4255 + UCCUCGUCCCCGUUCUC 17 4740
BCLllA-4256 - GCGGCACGGGAAGUGGA 17 4741
BCLllA-4257 - UGGGCAGCCCCAGCUCG 17 4742
BCLllA-4258 - CGCAGCGGCACGGGAAG 17 4743
BCLllA-4259 - CCGCCCGGGGAGCUGGA 17 4744
BCLllA-4260 + AUGGAGAGGUGGCUGGG 17 4745
BCLllA-4261 + CUCCUCGUCCCCGU UCU 17 4746
BCLllA-4262 - UACUUAGAAAGCGAACA 17 4747
BCLllA-4263 - GGGCAGGCCCAGCUCAA 17 4748
BCLllA-4264 - ACCGCCCGGGGAGCUGG 17 4749
BCLllA-4265 + AAACAGGGGGGGAGUGG 17 4750 BCLllA-4266 + CGGGGGCUGGGAGGGAG 17 4751
BCLllA-4267 + CCGGCCUGGGGACAGCG 17 4752
BCLllA-4268 + UAGGGCUGGGCCGGCCU 17 4753
BCLllA-4269 - AAGAAUCUACUUAGAAA 17 4754
BCLllA-4270 + AACAGGGGGGGAGUGGG 17 4755
BCLllA-4271 + ACCGGGGGCUGGGAGGG 17 4756
BCLllA-4272 - GGUCGUGGGCGUGGGCG 17 4757
BCLllA-4273 + GGAGGGGGGGCGUCGCC 17 4758
BCLllA-4274 - GAACGGGGACGAGGAGG 17 4759
BCLllA-4275 + GACCGGGGGCUGGGAGG 17 4760
BCLllA-4276 + GGGAGGGGGGGCGUCGC 17 4761
BCLllA-4277 + GGGGGCUGGGAGGGAGG 17 4762
BCLllA-4278 - AGCGGCACGGGAAGUGG 17 4763
BCLllA-4279 + GAUUGCAGAGGAGGGAG 17 4764
BCLllA-4280 + GGGGGGGCGUCGCCAGG 17 4765
BCLllA-4281 + GGAUUGCAGAGGAGGGA 17 4766
BCLllA-4282 + GGGCGGAUUGCAGAGGA 17 4767
BCLllA-4283 + GCGGAUUGCAGAGGAGG 17 4768
BCLllA-4284 - GAGCUGACGGAGAGCGA 17 4769
BCLllA-4285 + G AAAACUG CCACACAU C 17 4770
BCLllA-4286 + AUUGCAGAGGAGGGAGG 17 4771
BCLllA-4287 + GGGGCGGAUUGCAGAGG 17 4772
BCLllA-4288 + CGGAUUGCAGAGGAGGG 17 4773
BCLllA-4289 + AGGGGCGGAUUGCAGAG 17 4774
BCLllA-4290 - ACGGGGACGAGGAGGAA 17 4775
BCLllA-4291 + GGAGGAGGGGCGGAUUG 17 4776
BCLllA-4292 - CGCUUCUCCACACCGCC 17 4777
BCLllA-4293 - UGACGGAGAGCGAGAGG 17 4778
BCLllA-4294 - AGGAGCUGACGGAGAGC 17 4779
BCLllA-4295 + GCUGGGAGGGAGGAGGG 17 4780
BCLllA-4296 + AGGAGGGGCGGAUUGCA 17 4781
BCLllA-4297 + UGUUGGGCAUCGCGGCC 17 4782
BCLllA-4298 - CGGGGACGAGGAGGAAG 17 4783
BCLllA-4299 + GGAGGGGCGGAUUGCAG 17 4784
BCLllA-4300 - GGAGGAGCUGACGGAGA 17 4785
BCLllA-4301 - GGGACGAGGAGGAAGAG 17 4786
BCLllA-4302 - AGGAGGAGGAGCUGACG 17 4787
BCLllA-4303 - ACGAGGAAGAGGAAGAA 17 4788
BCLllA-4304 - AGGAAGAGGAAGAAGAG 17 4789
BCLllA-4305 - AGGAAGAGGAGGACGAC 17 4790
BCLllA-4306 - AGGAGGACGACGAGGAA 17 4791
BCLllA-4307 - GGAGGAGGAGGAGCUGA 17 4792 BCLllA-4308 - GGAAGAGGAGGACGACG 17 4793
BCLllA-4309 - GGAGGAAGAGGAGGACG 17 4794
BCLllA-4310 - GGAAGAGGAAGAAGAGG 17 4795
BCLllA-4311 - AGGAGGAGGAGGAGCUG 17 4796
BCLllA-4312 - CGAGGAAGAGGAAGAAG 17 4797
BCLllA-4313 - GGACGACGAGGAAGAGG 17 4798
BCLllA-4314 - GGAGGACGACGAGGAAG 17 4799
BCLllA-4315 - CGACGAGGAAGAGGAAG 17 4800
BCLllA-4316 - AGAGGAGGACGACGAGG 17 4801
BCLllA-4317 - AAGAAGAGGAGGAAGAG 17 4802
BCLllA-4318 - AGGAAGAAGAGGAGGAA 17 4803
BCLllA-4319 - AGAGGAAGAAGAGGAGG 17 4804
BCLllA-4320 - AAGAGGAGGAAGAGGAG 17 4805
BCLllA-4321 - AGGAGGAAGAGGAGGAG 17 4806
BCLllA-4322 - GGAAGAAGAGGAGGAAG 17 4807
BCLllA-4323 - AGAAGAGGAGGAAGAGG 17 4808
BCLllA-4324 - AGAGGAGGAAGAGGAGG 17 4809
BCLllA-4325 - GGAGGAAGAGGAGGAGG 17 4810
Table 6A provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to first tier parameters. The targeting domains bind within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 6A
Figure imgf000244_0001
Table 6B provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene. The targeting domains target outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 6B
Figure imgf000245_0001
Table 7A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: BCL11 A- 5210 and BCLl lA-5204, BCLl lA-5211 and BCLl lA-5204, BCLl lA-5172 and BCLl lA- 5176, BCLl lA-5172 and BCLl lA-5186, BCLl lA-5179 and BCLl lA-5176, or BCLl lA-5179 and BCLl lA-5186.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene. For example, gRNA pairs that target upstream (i.e., 5') of the enhancer region in the BCLllA gene (e.g., BCLl lA-5210 and BCLl lA-5204, or BCLl lA-5211 and BCLHA- 5204) can be paired with gRNA pairs that target downstream (i.e., 3') of the enhancer region in the BCLllA gene (e.g., BCLl lA-5172 and BCLl lA-5176, BCLl lA-5172 and BCLl lA-5186, BCLl lA-5179 and BCLl lA-5176, or BCLl lA-5179 and BCLl lA-5186).
Table 7A
Figure imgf000246_0001
Table 7B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 7B
Figure imgf000248_0001
Table 7C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an
embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 7C
Figure imgf000250_0001
Table 7D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to forth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 7D
Figure imgf000251_0001
BCLllA-5203 - AG AAAG CAG U GUAAG G C 17 5' 4866
BCLllA-5204 - AGAAUAAAAGGCUGUUU 17 5' 4867
BCLllA-5205 - AGUAAAAUAAUUAGAAUAAA 20 5' 4868
BCLllA-5206 - AGUAAGUAUUUUCUUUCAUU 20 3' 4869
BCLllA-5207 - AGUAUUUUCUUUCAUUG 17 3' 4870
BCLllA-5208 - AUUAAGAAAGCAGUGUA 17 5' 4871
BCLllA-5209 - AU U AG AAU AAAAGG CUG U U U 20 5' 4872
BCLllA-5210 + AUUAUUUUACUAGUGAAUUA 20 5' 4873
BCLllA-5211 + AUUUUACUAGUGAAUUA 17 5' 4874
BCLllA-5212 + CACAU AAAAAU U UAAGA 17 5' 4875
BCLllA-5213 - CAGUAAGUAUUUUCU UUCAU 20 3' 4876
BCLllA-5214 + CU CACAU AAAAAU U U AAG AC 20 5' 4877
BCLllA-5215 - UAAGUAUUUUCUUUCAU 17 3' 4878
BCLllA-5216 - UAAGUAUUUUCUUUCAUUGG 20 3' 4879
BCLllA-5217 - UAUUUACAGCCAUAACA 17 3' 4880
BCLllA-5218 + U CU CACAU AAAAAU U UAAGA 20 5' 4881
BCLllA-5219 - UGGAAUGUAGAGAGGCAGAG 20 5' 4882
BCLllA-5220 - UGUUUUGGAAUGUAGAG 17 5' 4883
BCLllA-5221 - U U A AG A A AG CAGUGUAAGGC 20 5' 4884
BCLllA-5222 - U UGGAAUGUAGAGAGGCAGA 20 5' 4885
BCLllA-5223 - UUUGGAAUGUAGAGAGGCAG 20 5' 4886
Table 8A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 8A
Figure imgf000253_0001
Table 8B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 8B
Figure imgf000254_0001
BCLllA-5231 - AGCACACUGCUGUAAUU 17 5' 4894
BCLllA-5232 + AGUGCUACUUAUACAAUUCA 20 3' 4895
BCLllA-5233 + AUAGUUUGCUUCCCCCA 17 3' 4896
BCLllA-5234 - AUGAGCACACUGCUGUAAUU 20 5' 4897
BCLllA-5235 - CAAACU AU U UACAGCCAUAA 20 3' 4898
BCLllA-5236 - CAGCCAUAACAGGGUU UCCA 20 3' 4899
BCLllA-5237 - CCAU AACAGGG U U U CCA 17 3' 4900
BCLllA-5238 + CUACUUAUACAAUUCAC 17 3' 4901
BCLllA-5239 - CUU UGGCUAUUGAUACUGAU 20 3' 4902
BCLllA-5240 + UAAAUAGUUUGCUUCCCCCA 20 3' 4903
BCLllA-5241 + UAGUUUGCUUCCCCCAAUGA 20 3' 4904
BCLllA-5242 - UGCAACACAAGUUGUGUAGA 20 5' 4905
BCLllA-5243 - UGGAAUGUAGAGAGGCA 17 5' 4906
BCLllA-5244 - UGGCUAUUGAUACUGAU 17 3' 4907
BCLllA-5245 + UUUGCUUCCCCCAAUGA 17 3' 4908
BCLllA-5246 - U UUUGGAAUGUAGAGAGGCA 20 5' 4909
Table 8C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 8C
Figure imgf000256_0001
BCLllA-5253 - GUAAGUAUUUUCUUUCA 17 3' 4916
BCLllA-5254 - GUAAGUAUUUUCUUUCAUUG 20 3' 4917
BCLllA-5255 - GUAUUUUCUU UCAUUGG 17 3' 4918
Table 8D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to forth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 8D
Figure imgf000258_0001
BCLllA-5274 + ACAU AAAAAU U U AAG AC 17 5' 4937
BCLllA-5275 + ACUUUCUAGUU UUGCUUAAC 20 3' 4938
BCLllA-5276 + AGAAAAUACUUACUGUACUG 20 3' 4939
BCLllA-5277 - AGAAUAAAAGGCUGUUU 17 5' 4940
BCLllA-5278 - AGCAAAACU AG AAAG U U U U A 20 3' 4941
BCLllA-5279 - AGUAAGUAUUUUCUUUCAUU 20 3' 4942
BCLllA-5280 - AGUAUUUUCUUUCAUUG 17 3' 4943
BCLllA-5281 - AGUGAAUUGUAUAAGUAGCA 20 3' 4944
BCLllA-5282 + AUACUUACUGUACUGCA 17 3' 4945
BCLllA-5283 + AUCUCACAU A A A A A U U U A AG 20 5' 4946
BCLllA-5284 - AUUAAGAAAGCAGUGUAAGG 20 5' 4947
BCLllA-5285 - AU U AG AAU AAAAGG CUG U U U 20 5' 4948
BCLllA-5286 + AUUAUUUUACUAGUGAAUUA 20 5' 4949
BCLllA-5287 + AU U U AAG ACGGG AAAAC 17 5' 4950
BCLllA-5288 + AUUUUACUAGUGAAUUA 17 5' 4951
BCLllA-5289 - AUUUUCAUGUUAAGCAAAAC 20 3' 4952
BCLllA-5290 + CACAU AAAAAU U U AAG A 17 5' 4953
BCLllA-5291 - CAGUAAGUAUUUUCU UUCAU 20 3' 4954
BCLllA-5292 - CCGUCU UAAAUUUUUAU 17 5' 4955
BCLllA-5293 + CU CACAU AAAAAU U U AAG AC 20 5' 4956
BCLllA-5294 - UAAAAGGCUGUUUUGGAAUG 20 5' 4957
BCLllA-5295 - UAAGUAUUUUCUUUCAU 17 3' 4958
BCLllA-5296 - UAAGUAUUUUCUUUCAUUGG 20 3' 4959
BCLllA-5297 - U AAU U CACU AG U AAAAU AAU 20 5' 4960
BCLllA-5298 + UACUUACUGUACUGCAG 17 3' 4961
BCLllA-5299 - UAGAAUAAAAGGCUGUU 17 5' 4962
BCLllA-5300 + UAUUUUACUAGUGAAUU 17 5' 4963
BCLllA-5301 + U CACAU AAAAAU U U AAG 17 5' 4964
BCLllA-5302 + U CU CACAU AAAAAU U U AAG A 20 5' 4965
BCLllA-5303 + UGUUUCAUUU UUUGCUGACA 20 3' 4966
BCLllA-5304 - UGUUUUGGAAUGUAGAGAGG 20 5' 4967
BCLllA-5305 - U UAAAUUUUUAUGUGAG 17 5' 4968
BCLllA-5306 + U UAUUCUAAUUAUUU UACUA 20 5' 4969
BCLllA-5307 - U U CACU AG U AAAAU AAU 17 5' 4970
BCLllA-5308 - U UCAUGUUAAG C A A A AC 17 3' 4971
BCLllA-5309 + UUCAUUUUUUGCUGACA 17 3' 4972
BCLllA-5310 - UUCCCGUCUUAAAUUU UUAU 20 5' 4973
BCLllA-5311 + UUCUAAUUAUUUUACUA 17 5' 4974
BCLllA-5312 + UUCUAGUUUUGCUUAAC 17 3' 4975
BCLllA-5313 - UUCUGUGUCAGCAAAAA 17 3' 4976
BCLllA-5314 - U UUGGAAUGUAGAGAGG 17 5' 4977
BCLllA-5315 - UUUGGAAUGUAGAGAGGCAG 20 5' 4978 Table 9 provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 9
Figure imgf000260_0001
Table 10A provides exemplary targeting domains for knocking down expression of the BCL11A gene according to first tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 10A
Figure imgf000261_0001
Table 10B provides exemplary targeting domains for knocking down expression of the BCL11A gene according to second tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 10B
Figure imgf000261_0002
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-4357 + ACACGGCAAUGGUUCCAGAU 20 4988
BCLllA-4358 - ACCAUGUCUCGCCGCAAGCA 20 4989
BCLllA-4359 + ACGACGGCUCGGUUCACAUC 20 4990
BCLllA-4360 + AUUCCCGUUUGCU UAAGUGC 20 4991
BCLllA-4361 - CAUUUUAGAGUCCGCGUGUG 20 4992
BCLllA-4362 + CGGACGCCAGACGCGGCCCC 20 4993
BCLllA-4363 + CGGUUCACAUCGGGAGAGCC 20 4994
BCLllA-4364 - CUCCUGACGU UCAAGUUCGC 20 4995
BCLllA-4365 - UAAUAAUCACGAGAGCGCGC 20 4996
BCLllA-4366 - UCCUGACGUUCAAGUUCGCA 20 4997
BCLllA-4367 + UCGGUUCACAUCGGGAGAGC 20 4998
BCLllA-4368 + UCU UUUACCUCGACUCUCGG 20 4999
BCLllA-4369 + UGCUUGCGGCGAGACAUGGU 20 5000
BCLllA-4370 - UUUAGAGUCCGCGUGUGUGG 20 5001
BCLllA-4371 + ACGGCUCGGUUCACAUC 17 5002
BCLllA-4372 - AUGUCUCGCCGCAAGCA 17 5003
BCLllA-4373 - CUGACGUUCAAGUUCGC 17 5004
BCLllA-4374 - UAAUCACGAGAGCGCGC 17 5005
BCLllA-4375 + UCCGCGGACGCCAGACG 17 5006
BCLllA-4376 - U G ACG U U CAAG U U CG CA 17 5007
BCLllA-4377 - U UAGAGUCCGCGUGUGU 17 5008
BCLllA-4378 + UUGCGGCGAGACAUGGU 17 5009
BCLllA-4379 + U UGCUUGCGGCGAGACA 17 5010
BCLllA-4380 + U UUACCUCGACUCUCGG 17 5011
BCLllA-4381 - U UUAGAGUCCGCGUGUG 17 5012
Table IOC provides exemplary targeting domains for knocking down expression of the BCL11A gene according to third tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression. Table IOC
Figure imgf000263_0001
BCLllA-4420 - GCACUUGAACUUGCAGCUCA 20 5051
BCLllA-4421 + GCAGGGAAGAUGAAUUG 17 5052
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 5053
BCLllA-4423 + GCAGGGGUGGGAGGAAA 17 5054
BCLllA-4424 + GCAGGGGUGGGAGGAAAGGG 20 5055
BCLllA-4425 + GCCAAUGGCCAGUGCGGGGA 20 5056
BCLllA-4426 - GCCACCCCUUUCUUCUCUCC 20 5057
BCLllA-4427 + GCCAGACGCGGCCCCCG 17 5058
BCLllA-4428 - GCCCCAGCGCCCCCUCCCCU 20 5059
BCLllA-4429 + GCCCCCGGGGGAGGGGC 17 5060
BCLllA-4430 - GCCCGCCCCUCCCCCGG 17 5061
BCLllA-4431 + GCCGAGGGGAGGGGGCGCUG 20 5062
BCLllA-4432 + GCCGCGGCGGUGGCGUGGCC 20 5063
BCLllA-4433 + GCCGGGAGAGAAGAAAG 17 5064
BCLllA-4434 + GCCGGGAGAGAAGAAAGGGG 20 5065
BCLllA-4435 + GCGAGACAUGGUGGGCUGCG 20 5066
BCLllA-4436 + GCGCAGGGAAGAUGAAUUGU 20 5067
BCLllA-4437 + GCGCCGCGGCGGUGGCG 17 5068
BCLllA-4438 - GCGCUCGCUGCGGCCAC 17 5069
BCLllA-4439 + GCGGCCCCCGGGGGAGGGGC 20 5070
BCLllA-4440 - GCGGCGCUCGCUGCGGCCAC 20 5071
BCLllA-4441 + GCGGCGGCGGCGGCGGC 17 5072
BCLllA-4442 + GCGGCGGCGGCGGCGGCGGC 20 5073
BCLllA-4443 + GCGGCGGCGGCGGCGGCGGG 20 5074
BCLllA-4444 + GCGGCGGCGGCGGCGGG 17 5075
BCLllA-4445 + GCGGCGGGCGGACGACGGCU 20 5076
BCLllA-4446 + GCGGCGGUGGCGUGGCC 17 5077
BCLllA-4447 + GCGGGCGGCGGCGGCGG 17 5078
BCLllA-4448 + GCGGGCGGCGGCGGCGGCGG 20 5079
BCLllA-4449 + GCGGGGAGGGGGAGGUG 17 5080
BCLllA-4450 + GCGUGGCCGGGAGAGAAGAA 20 5081
BCLllA-4451 + GCUCCCCCCCACACACG 17 5082
BCLllA-4452 + GCUGGGGUUUGCCU UGCUUG 20 5083
BCLllA-4453 + GGACAAGCCAAUGGCCAGUG 20 5084
BCLllA-4454 + GGACACACAUCAGGGGC 17 5085
BCLllA-4455 + GGACAGAGACACACAAAACA 20 5086
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 5087
BCLllA-4457 - GGACUAGAAGCAAAAGCGAG 20 5088
BCLllA-4458 + GGAGAGAAGAAAGGGGUGGC 20 5089
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 5090
BCLllA-4460 + GGAGAGCCGGGUUAGAAAGA 20 5091
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 5092 BCLllA-4462 + GGAGGGGGAGGUGCGGGGCG 20 5093
BCLllA-4463 + GGAGGGGGCGCUGGGGCCGC 20 5094
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 5095
BCLllA-4465 + GGCAGGGGUGGGAGGAA 17 5096
BCLllA-4466 - GGCCACUGG UGAGCCCG 17 5097
BCLllA-4467 + GGCCCCCGGGGGAGGGG 17 5098
BCLllA-4468 - GGCCCGCCCCUCCCCCG 17 5099
BCLllA-4469 + GGCCGAGGGGAGGGGGCGCU 20 5100
BCLllA-4470 + GGCCGCAGCGAGCGCCG 17 5101
BCLllA-4471 + GGCCGCAGCGAGCGCCGCGG 20 5102
BCLllA-4472 + GGCCGCGGGCUCACCAG 17 5103
BCLllA-4473 + GGCCGGGAGAGAAGAAA 17 5104
BCLllA-4474 + GGCGAGACAUGGUGGGCUGC 20 5105
BCLllA-4475 + GGCGAGCAGGAGAGAAG 17 5106
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 5107
BCLllA-4477 + GGCGCAGGGAAGAUGAAUUG 20 5108
BCLllA-4478 + GGCGGCGGCGGCGGCGG 17 5109
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 5110
BCLllA-4480 + GGCGGGCCGAGGGGAGG 17 5111
BCLllA-4481 + GGCUGCGGGGCGGGCGG 17 5112
BCLllA-4482 + GGCUGCGGGGCGGGCGGCGG 20 5113
BCLllA-4483 + GGGAGAGAAGAAAGGGG 17 5114
BCLllA-4484 + GGGAGGAAAGGGUGGGG 17 5115
BCLllA-4485 + GGGAGGGGCGGGCCGAG 17 5116
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 5117
BCLllA-4487 + GGGAGGGGGAGGUGCGGGGC 20 5118
BCLllA-4488 + GGGAGGGGGCGCUGGGGCCG 20 5119
BCLllA-4489 + GGGAGGUGCGGGGCGGG 17 5120
BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 5121
BCLllA-4491 + GGGCGAGCAGGAGAGAA 17 5122
BCLllA-4492 + GGGCGGGCCGAGGGGAG 17 5123
BCLllA-4493 + GGGGAAGCUCACACCAA 17 5124
BCLllA-4494 + GGGGAGGGGCGGGCCGA 17 5125
BCLllA-4495 + GGGGAGGGGGAGGUGCG 17 5126
BCLllA-4496 + GGGGAGGGGGAGGUGCGGGG 20 5127
BCLllA-4497 + GGGGAGGUGCGGGGCGG 17 5128
BCLllA-4498 - GGGGCCGCGUCUGGCGUCCG 20 5129
BCLllA-4499 + GGGGCGGGCCGAGGGGA 17 5130
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 5131
BCLllA-4501 + GGGGCGGGCGGCGGCGGCGG 20 5132
BCLllA-4502 + GGGGGAGGGGCGGGCCG 17 5133
BCLllA-4503 + GGGGGAGGUGCGGGGCG 17 5134 BCLllA-4504 + GGGGGCGCUGGGGCCGC 17 5135
BCLllA-4505 + GGGGUGGCAGGGGUGGG 17 5136
BCLllA-4506 + GGGGUGGGAGGAAAGGG 17 5137
BCLllA-4507 + GGGGUGGGAGGAAAGGGUGG 20 5138
BCLllA-4508 + GGGGUUUGCCUUGCUUG 17 5139
BCLllA-4509 + GGGUGGGAGGAAAGGGU 17 5140
BCLllA-4510 + GGGUGGGAGGAAAGGGUGGG 20 5141
BCLllA-4511 - G G U A A A AG AG A U A A AG G 17 5142
BCLllA-4512 + GGUGGCAGGGGUGGGAGGAA 20 5143
BCLllA-4513 + GGUGGGAGGAAAGGGUG 17 5144
BCLllA-4514 + GGUGGGAGGAAAGGGUGGGG 20 5145
BCLllA-4515 + GGUUCCAGAUGGGAUGA 17 5146
BCLllA-4516 - GUAUUAUUUCUAAUUUAUUU 20 5147
BCLllA-4517 - GUCGAGGU A A A AG AG A U AAA 20 5148
BCLllA-4518 + GUGCGGGGAGGGGGAGGUGC 20 5149
BCLllA-4519 + GUGCGGGGCGGGGGGCUCCG 20 5150
BCLllA-4520 + GUGGCAGGGGUGGGAGGAAA 20 5151
BCLllA-4521 + GUGGCCGGGAGAGAAGAAAG 20 5152
BCLllA-4522 + GUGGGAGGAAAGGGUGG 17 5153
BCLllA-4523 + GUGGGCUGCGGGGCGGG 17 5154
BCLllA-4524 + GUGGGCUGCGGGGCGGGCGG 20 5155
BCLllA-4525 - GUGUGUGGGGGGGAGCA 17 5156
Table 10D provides exemplary targeting domains for knocking down expression of the BCLllA gene according to forth tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 10D
Figure imgf000266_0001
BCLllA-4527 + AAAAAAAAAAAAAAAAAAGA 20 5158
BCLllA-4528 + AAAAAAAAAAAAAAAAG 17 5159
BCLllA-4529 + AAAAAAAAAAAAAAAGA 17 5160
BCLllA-4530 + AAAACAUGGGCAGGGCGAGC 20 5161
BCLllA-4531 - AAAACCCUCAUCCCAUC 17 5162
BCLllA-4532 - AAAACCU CCG AG AG U CG 17 5163
BCLllA-4533 - AAAAGCGAGGGGGAGAG 17 5164
BCLllA-4534 - AAAGCGAGGGGGAGAGA 17 5165
BCLllA-4535 + AAAGGGGUGGCAGGGGU 17 5166
BCLllA-4536 + AAAGGGGUGGCAGGGGUGGG 20 5167
BCLllA-4537 + AAAUAAUACAAAGAUGGCGC 20 5168
BCLllA-4538 - AACCCCAGCACUUAAGCAAA 20 5169
BCLllA-4539 + AACGUCAGGAGUCUGGA 17 5170
BCLllA-4540 + AAGAAAGGGGUGGCAGGGGU 20 5171
BCLllA-4541 + AAGAGACCAGGACAAGCCAA 20 5172
BCLllA-4542 + AAGCCAAUGGCCAGUGC 17 5173
BCLllA-4543 - AAGCGAGGGGGAGAGAG 17 5174
BCLllA-4544 + AAGUGCAUACACGGCAA 17 5175
BCLllA-4545 + AAUAAUACAAAGAUGGCGCA 20 5176
BCLllA-4546 + AAUACAAAGAUGGCGCA 17 5177
BCLllA-4547 + AAUGGACACACAUCAGGGGC 20 5178
BCLllA-4548 + AAUGGCCAGUGCGGGGA 17 5179
BCLllA-4549 + AAUGGUUCCAGAUGGGAUGA 20 5180
BCLllA-4550 + AAU U AAAU AAAAU U AAA 17 5181
BCLllA-4551 + AAU U AG AAAU AAU ACAAAG A 20 5182
BCLllA-4552 - AAUUUAUUUUGGAUGUCAAA 20 5183
BCLllA-4553 + ACAAGCCAAUGGCCAGUGCG 20 5184
BCLllA-4554 + ACACACAAAACAUGGGC 17 5185
BCLllA-4555 + ACACCAAUGGACACACAUCA 20 5186
BCLllA-4556 + ACAUGGGCAGGGCGAGC 17 5187
BCLllA-4557 + ACCAAUGGACACACAUC 17 5188
BCLllA-4558 - ACCCCAGCACUUAAGCAAAC 20 5189
BCLllA-4559 - ACCCCUU UCU UCUCUCC 17 5190
BCLllA-4560 + ACGCCAGACGCGGCCCC 17 5191
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 5192
BCLllA-4562 + ACGCGGCCCCCGGGGGA 17 5193
BCLllA-4563 + ACGGCAAUGGUUCCAGA 17 5194
BCLllA-4564 - ACU AG AAG CAAAAG CG A 17 5195
BCLllA-4565 - ACUGAUGAAGAUAUUUUCUC 20 5196
BCLllA-4566 - ACU UGAACUUGCAGCUC 17 5197
BCLllA-4567 - ACU UGAACUUGCAGCUCAGG 20 5198
BCLllA-4568 - AGAAAAACCUCCGAGAGUCG 20 5199 BCLllA-4569 + AGAAGAAAGGGGUGGCA 17 5200
BCLllA-4570 + AGAAGGGGAGGAGGGAA 17 5201
BCLllA-4571 + AGACACACAAAACAUGGGCA 20 5202
BCLllA-4572 + AGACAUGGUGGGCUGCG 17 5203
BCLllA-4573 + AGACAUGGUGGGCUGCGGGG 20 5204
BCLllA-4574 + AGACCAGGACAAGCCAA 17 5205
BCLllA-4575 + AGACGCGGCCCCCGGGGGAG 20 5206
BCLllA-4576 + AGAGAAGAAAGGGGUGGCAG 20 5207
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 5208
BCLllA-4578 + AGAGACACACAAAACAU 17 5209
BCLllA-4579 + AGAGAGAAGAGAGAUAG 17 5210
BCLllA-4580 + AGAGAGAGAAGAGAGAUAGA 20 5211
BCLllA-4581 + AGAGAGAGAGAUGAAAAAAA 20 5212
BCLllA-4582 - AGAGUCCGCGUGUGUGG 17 5213
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 5214
BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 5215
BCLllA-4585 + AGCCAAUGGCCAGUGCG 17 5216
BCLllA-4586 + AGCCAAUGGCCAGUGCGGGG 20 5217
BCLllA-4587 - AGCCCCUGAUGUGUGUCCAU 20 5218
BCLllA-4588 + AGCGAGCGCCGCGGCGG 17 5219
BCLllA-4589 + AG C U G C A AG U U C A AG U G 17 5220
BCLllA-4590 - AGGACUAGAAGCAAAAGCGA 20 5221
BCLllA-4591 + AGGAGAGAAGGGGAGGA 17 5222
BCLllA-4592 + AGGGCGAGCAGGAGAGA 17 5223
BCLllA-4593 + AGGGGCGGGCCGAGGGG 17 5224
BCLllA-4594 + AGGGGCGGGCCGAGGGGAGG 20 5225
BCLllA-4595 + AGGGGGAGGUGCGGGGC 17 5226
BCLllA-4596 + AGGGGGAGGUGCGGGGCGGG 20 5227
BCLllA-4597 + AGGGGGCGCUGGGGCCG 17 5228
BCLllA-4598 + AGGGGUGGGAGGAAAGGGUG 20 5229
BCLllA-4599 - AGG U AAAAG AG AU AAAG 17 5230
BCLllA-4600 - AGUCCGCGUGUGUGGGG 17 5231
BCLllA-4601 - AGUCGAGGUAAAAGAGAUAA 20 5232
BCLllA-4602 + AGUGCGGGGAGGGGGAGGUG 20 5233
BCLllA-4603 + AGUGGCCGCAGCGAGCGCCG 20 5234
BCLllA-4604 + AUAAUUAUUAUUACUAUUAU 20 5235
BCLllA-4605 + AUCUCUUU UACCUCGACUCU 20 5236
BCLllA-4606 + AUGGCCAGUGCGGGGAG 17 5237
BCLllA-4607 + AUGGUGGGCUGCGGGGC 17 5238
BCLllA-4608 + AUGGUGGGCUGCGGGGCGGG 20 5239
BCLllA-4609 + AUUAUUAUUACUAUUAU 17 5240
BCLllA-4610 - AUUUUAGAGUCCGCGUGUGU 20 5241 BCLllA-4611 - CAAAAGCGAGGGGGAGAGAG 20 5242
BCLllA-4612 + CAAAAGUGCAUACACGGCAA 20 5243
BCLllA-4613 + CAAGCCAAUGGCCAGUG 17 5244
BCLllA-4614 + CAAUGGACACACAUCAG 17 5245
BCLllA-4615 + CAAUGGCCAGUGCGGGG 17 5246
BCLllA-4616 + CAAUGGCCAGUGCGGGGAGG 20 5247
BCLllA-4617 + CAAUGGUUCCAGAUGGGAUG 20 5248
BCLllA-4618 + CACACAAAACAUGGGCA 17 5249
BCLllA-4619 + CACACCAAUGGACACACAUC 20 5250
BCLllA-4620 + CACCAAUGGACACACAUCAG 20 5251
BCLllA-4621 - CACCGCCGCGGCGCUCGCUG 20 5252
BCLllA-4622 - CACUGGCCAUUGGCUUGUCC 20 5253
BCLllA-4623 - CACUUGAACUUGCAGCUCAG 20 5254
BCLllA-4624 + CAGACGCGGCCCCCGGGGGA 20 5255
BCLllA-4625 + CAGAGACACACAAAACA 17 5256
BCLllA-4626 - CAGGACUAGAAGCAAAAGCG 20 5257
BCLllA-4627 + CAGGAGAGAAGGGGAGG 17 5258
BCLllA-4628 + CAGGGAAGAUGAAUUGU 17 5259
BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 5260
BCLllA-4630 + CAGGGGUGGGAGGAAAGGGU 20 5261
BCLllA-4631 + CAUGGUGGGCUGCGGGG 17 5262
BCLllA-4632 + CCAAUGGACACACAUCA 17 5263
BCLllA-4633 + CCAAUGGCCAGUGCGGGGAG 20 5264
BCLllA-4634 + CCAGACGCGGCCCCCGG 17 5265
BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 5266
BCLllA-4636 - CC AG C ACU U AAG CAAAC 17 5267
BCLllA-4637 - CCAGCGCCCCCUCCCCU 17 5268
BCLllA-4638 + CCAGUGCGGGGAGGGGG 17 5269
BCLllA-4639 - CCCAG CAC U U AAG C AAA 17 5270
BCLllA-4640 - CCCCCGGGGGCCGCGUC 17 5271
BCLllA-4641 - CCCCUCCCCGCACUGGCCAU 20 5272
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 5273
BCLllA-4643 + CCCGUUUGCUUAAGUGC 17 5274
BCLllA-4644 - CCCUCGGCCCGCCCCUCCCC 20 5275
BCLllA-4645 - CCCUGAUGUGUGUCCAU 17 5276
BCLllA-4646 + CCGAGGGGAGGGGGCGC 17 5277
BCLllA-4647 - CCGCGUGUGUGGGGGGGAGC 20 5278
BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 5279
BCLllA-4649 + CCGUUUGCUUAAGUGCU 17 5280
BCLllA-4650 - CCUCCCCCGGGGGCCGCGUC 20 5281
BCLllA-4651 - CCUCCCCCUCCCCGCAC 17 5282
BCLllA-4652 - CCUCGGCCCGCCCCUCCCCC 20 5283 BCLllA-4653 + CCUGCUCCCCCCCACACACG 20 5284
BCLllA-4654 + CGAGACAUGGUGGGCUG 17 5285
BCLllA-4655 + CGAGCGCCGCGGCGGUGGCG 20 5286
BCLllA-4656 + CGAGGGGAGGGGGCGCU 17 5287
BCLllA-4657 - CGAGGUAAAAGAGAUAA 17 5288
BCLllA-4658 - CGAGGUAAAAGAGAUAAAGG 20 5289
BCLllA-4659 - CGCACUUGAACUUGCAGCUC 20 5290
BCLllA-4660 + CGCAGCGAGCGCCGCGG 17 5291
BCLllA-4661 + CGCAGCGAGCGCCGCGGCGG 20 5292
BCLllA-4662 + CGCCAGACGCGGCCCCC 17 5293
BCLllA-4663 - CGCCGCGGCGCUCGCUG 17 5294
BCLllA-4664 + CGCCGCGGCGGUGGCGUGGC 20 5295
BCLllA-4665 + CGCGGCCCCCGGGGGAG 17 5296
BCLllA-4666 + CGCGGCCCCCGGGGGAGGGG 20 5297
BCLllA-4667 + CGCGGCGGUGGCGUGGC 17 5298
BCLllA-4668 - CGCGUGUGUGGGGGGGAGCA 20 5299
BCLllA-4669 + CGGCAAUGGUUCCAGAU 17 5300
BCLllA-4670 - CGGCCACGCCACCGCCG 17 5301
BCLllA-4671 - CGGCCCGCCCCUCCCCC 17 5302
BCLllA-4672 + CGGCGAGACAUGGUGGGCUG 20 5303
BCLllA-4673 + CGGCGGCGGCGGGCGGACGA 20 5304
BCLllA-4674 + CGGCGGCGGGCGGACGA 17 5305
BCLllA-4675 + CGGGGAGGGGGAGGUGC 17 5306
BCLllA-4676 + CGGGGCGGGGGGCUCCG 17 5307
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 5308
BCLllA-4678 + CGUGGCCGGGAGAGAAGAAA 20 5309
BCLllA-4679 - CGUGUGUGGGGGGGAGC 17 5310
BCLllA-4680 + CGUUUGCU UAAGUGCUG 17 5311
BCLllA-4681 - CUAGAAGCAAAAGCGAG 17 5312
BCLllA-4682 - CUCCCCGCACUGGCCAU 17 5313
BCLllA-4683 - CUCGGCCCGCCCCUCCCCCG 20 5314
BCLllA-4684 + CUGAGCUGCAAGU UCAAGUG 20 5315
BCLllA-4685 + CUGCGAACUUGAACGUC 17 5316
BCLllA-4686 + CUGGACAUGAAAAAGAGACC 20 5317
BCLllA-4687 + CUGUCUCAAAAGUGCAUACA 20 5318
BCLllA-4688 + CUUGAACGUCAGGAGUC 17 5319
BCLllA-4689 - CUUGAACUUGCAGCUCA 17 5320
BCLllA-4690 - CUUGAACUUGCAGCUCAGGG 20 5321
BCLllA-4691 + CUUGCGGCGAGACAUGG 17 5322
BCLllA-4692 + GU UCACAUCGGGAGAGC 17 5323
BCLllA-4693 + UAAUACAAAGAUGGCGC 17 5324
BCLllA-4694 + UAAUUAUUAUUACUAUUAUU 20 5325 BCLllA-4695 + UACACGGCAAUGGUUCCAGA 20 5326
BCLllA-4696 + U AG AAA U A A U AC A A AG A 17 5327
BCLllA-4697 - UAGAAGCAAAAGCGAGG 17 5328
BCLllA-4698 - UAGAGUCCGCGUGUGUG 17 5329
BCLllA-4699 - UAGAGUCCGCGUGUGUGGGG 20 5330
BCLllA-4700 - UCCCGGCCACGCCACCGCCG 20 5331
BCLllA-4701 + UCCCGU UUGCUUAAGUGCUG 20 5332
BCLllA-4702 + UCCCUGCGAACUUGAACGUC 20 5333
BCLllA-4703 - U CG AGG U AAAAG AG AU AAAG 20 5334
BCLllA-4704 - UCGGCCCGCCCCUCCCC 17 5335
BCLllA-4705 - UCGGCCCGCCCCUCCCCCGG 20 5336
BCLllA-4706 + U C U C A A A AG U G C A U AC A 17 5337
BCLllA-4707 - UCUCCU UCUUUCUAACC 17 5338
BCLllA-4708 + UCU UUUACCUCGACUCU 17 5339
BCLllA-4709 - UGAACUUGCAGCUCAGG 17 5340
BCLllA-4710 - UGCGGCCACUGGUGAGCCCG 20 5341
BCLllA-4711 + UGCGGGGAGGGGGAGGUGCG 20 5342
BCLllA-4712 + UGCGGGGCGGGCGGCGG 17 5343
BCLllA-4713 + UGCGGGGCGGGCGGCGGCGG 20 5344
BCLllA-4714 - UGCUUAAAAAAAAGCCAUGA 20 5345
BCLllA-4715 + UGGCCAGUGCGGGGAGG 17 5346
BCLllA-4716 + UGGCCAGUGCGGGGAGGGGG 20 5347
BCLllA-4717 - UGGCCAUUGGCUUGUCC 17 5348
BCLllA-4718 + UGGCCGGGAGAGAAGAA 17 5349
BCLllA-4719 + UGGGAGGAAAGGGUGGG 17 5350
BCLllA-4720 + UGGGGCCGCGGGCUCACCAG 20 5351
BCLllA-4721 + UGGUUCCAGAUGGGAUG 17 5352
BCLllA-4722 - UUAAAAAAAAGCCAUGA 17 5353
BCLllA-4723 - UUAGAGUCCGCGUGUGUGGG 20 5354
BCLllA-4724 + UUAUUAUUACUAUUAUU 17 5355
BCLllA-4725 - U UAUUUCUAAUUUAU UU 17 5356
BCLllA-4726 - UUAUUUUGGAUGUCAAA 17 5357
BCLllA-4727 + U UCACAUCGGGAGAGCC 17 5358
BCLllA-4728 + UUCCCGU UUGCUUAAGUGCU 20 5359
BCLllA-4729 + UUGAACGUCAGGAGUCUGGA 20 5360
BCLllA-4730 - U UGAACUUGCAGCUCAG 17 5361
BCLllA-4731 + UUGCUUGCGGCGAGACAUGG 20 5362
BCLllA-4732 + UUGUGGGAGAGCCGUCA 17 5363
BCLllA-4733 - U UUUAGAGUCCGCGUGUGUG 20 5364
Table 11A provides exemplary targeting domains for knocking down expression of the BCLllA gene according to first tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 11A
Figure imgf000272_0001
Table 11B provides exemplary targeting domains for knocking down expression of the BCL11A gene according to second tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression. Table 11B
Figure imgf000273_0001
Table 11C provides exemplary targeting domains for knocking down expression of the BCL11A gene according to third tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 11C
Figure imgf000273_0002
BCLllA-4765 + GAACGUCAGGAGUCUGG 17 6396
BCLllA-4766 + GAAGAAAGGGGUGGCAGGGG 20 6397
BCLllA-4767 + GAAGAGAGAUAGAGGGA 17 6398
BCLllA-4768 - G A AG C AAAAG CG AG GG G 17 6399
BCLllA-4769 + GAAGGGGAGGAGGGAAG 17 6400
BCLllA-4770 + GACAAGCCAAUGGCCAGUGC 20 6401
BCLllA-4771 + GACACACAAAACAUGGG 17 6402
BCLllA-4772 + GACGCCAGACGCGGCCC 17 6403
BCLllA-4773 + GACGCCAGACGCGGCCCCCG 20 6404
BCLllA-4774 + GACGCGGCCCCCGGGGG 17 6405
BCLllA-4775 - G ACU AG AAG CAAAAG CG 17 6406
BCLllA-4776 - GACUAGAAGCAAAAGCGAGG 20 6407
BCLllA-4777 + GACUCUCGGAGGUUUU UCUC 20 6408
BCLllA-4778 + GAGAAGAAAGGGGUGGC 17 6409
BCLllA-4779 + GAGAAGAGAGAUAGAGG 17 6410
BCLllA-4780 + GAGAAGGGGAGGAGGGA 17 6411
BCLllA-4781 + GAGACAUGGUGGGCUGCGGG 20 6412
BCLllA-4782 + GAGAGAAGAGAGAUAGA 17 6413
BCLllA-4783 + GAGAGAAGGGGAGGAGGGAA 20 6414
BCLllA-4784 + GAGAGAGAAGAGAGAUA 17 6415
BCLllA-4785 + GAGAGAGAGAAGAGAGA 17 6416
BCLllA-4786 + GAGAGAGAGAAGAGAGAUAG 20 6417
BCLllA-4787 + GAGAGAGAGAGAGAGAG 17 6418
BCLllA-4788 + GAGAGAUAGAGGGAGAGAGA 20 6419
BCLllA-4789 + GAGAUAGAGGGAGAGAGAGA 20 6420
BCLllA-4790 + GAGCAGGAGAGAAGGGG 17 6421
BCLllA-4791 + GAGCAGGAGAGAAGGGGAGG 20 6422
BCLllA-4792 + GAGCCGGGUUAGAAAGA 17 6423
BCLllA-4793 + G AG C U G C AAG U U C AAG U 17 6424
BCLllA-4794 + GAGGGAGAGAGAGAGAA 17 6425
BCLllA-4795 + GAGGGGCGGGCCGAGGG 17 6426
BCLllA-4796 + GAGGGGGAGGUGCGGGG 17 6427
BCLllA-4797 + GAGGGGGCGCUGGGGCC 17 6428
BCLllA-4798 - G AG G U AAAAG AG A U AAA 17 6429
BCLllA-4799 - GAGUCCGCG UGUGUGGG 17 6430
BCLllA-4800 - GAGUCGAGGUAAAAGAGAUA 20 6431
BCLllA-4801 + GAUAGAGGGAGAGAGAGAGA 20 6432
BCLllA-4802 - GAUGAAGAUAUUUUCUC 17 6433
BCLllA-4803 - GAUGUCAAAAGGCACUG 17 6434
BCLllA-4804 - GAUGUGUGUCCAUUGGU 17 6435
BCLllA-4805 + GCAAUGGUUCCAGAUGGGAU 20 6436
BCLllA-4806 - GCACUUGAACUUGCAGCUCA 20 6437 BCLllA-4807 - G C AG G AC U AG AAG CAAA AG C 20 6438
BCLllA-4808 + GCAGGAGAGAAGGGGAG 17 6439
BCLllA-4809 + GCAGGGAAGAUGAAUUG 17 6440
BCLllA-4810 + GCAGGGAAGAUGAAUUGUGG 20 6441
BCLllA-4811 + GCAGGGCGAGCAGGAGAGAA 20 6442
BCLllA-4812 + GCAGGGGUGGGAGGAAAGGG 20 6443
BCLllA-4813 - GCAU UUUUAAAUUUUUC 17 6444
BCLllA-4814 + GCCAAUGGCCAGUGCGGGGA 20 6445
BCLllA-4815 + GCCAGACGCGGCCCCCG 17 6446
BCLllA-4816 + GCCAGACGCGGCCCCCGGGG 20 6447
BCLllA-4817 + GCCCCCGGGGGAGGGGCGGG 20 6448
BCLllA-4818 + GCCGAGGGGAGGGGGCG 17 6449
BCLllA-4819 + GCCGCGGCGGUGGCGUGGCC 20 6450
BCLllA-4820 - GCCGCGUCUGGCGUCCG 17 6451
BCLllA-4821 + GCGAGACAUGGUGGGCU 17 6452
BCLllA-4822 - GCGCAGGACUAGAAGCAAAA 20 6453
BCLllA-4823 + GCGCAGGGAAGAUGAAUUGU 20 6454
BCLllA-4824 + GCGCCGCGGCGGUGGCGUGG 20 6455
BCLllA-4825 + GCGGACGCCAGACGCGGCCC 20 6456
BCLllA-4826 + GCGGCGAGACAUGGUGGGCU 20 6457
BCLllA-4827 + GCGGCGGUGGCGUGGCC 17 6458
BCLllA-4828 + GCGGGGAGGGGGAGGUG 17 6459
BCLllA-4829 + GCGGGGCGGGGGGCUCC 17 6460
BCLllA-4830 + GCGUGGCCGGGAGAGAAGAA 20 6461
BCLllA-4831 - GCGUGUGUGGGGGGGAG 17 6462
BCLllA-4832 + GCUCACCAGUGGCCGCA 17 6463
BCLllA-4833 - GCUCGCUGCGGCCACUG 17 6464
BCLllA-4834 + GCUGGACAUGAAAAAGAGAC 20 6465
BCLllA-4835 + GCUUGCGGCGAGACAUG 17 6466
BCLllA-4836 - GGAAAAAACCCUCAUCCCAU 20 6467
BCLllA-4837 + GGAAGGGGAAGCUCACACCA 20 6468
BCLllA-4838 + GGACAAGCCAAUGGCCAGUG 20 6469
BCLllA-4839 + GGACAUGAAAAAGAGAC 17 6470
BCLllA-4840 + GGACGCCAGACGCGGCCCCC 20 6471
BCLllA-4841 - GGACUAGAAG CAAA AG C 17 6472
BCLllA-4842 - GGACUAGAAGCAAAAGCGAG 20 6473
BCLllA-4843 + GGAGAGAAGAAAGGGGUGGC 20 6474
BCLllA-4844 + GGAGAGAAGGGGAGGAGGGA 20 6475
BCLllA-4845 + GGAGAGAGAGAGAAGAGAGA 20 6476
BCLllA-4846 + GGAGAGCCGGGUUAGAAAGA 20 6477
BCLllA-4847 + GGAGGGGCGGGCCGAGGGGA 20 6478
BCLllA-4848 + GGAGGGGGAGGUGCGGG 17 6479 BCLllA-4849 + GGAGGGGGAGGUGCGGGGCG 20 6480
BCLllA-4850 + GGCAGGGCGAGCAGGAGAGA 20 6481
BCLllA-4851 + GGCAGGGGUGGGAGGAAAGG 20 6482
BCLllA-4852 - GGCCGCGUCUGGCGUCC 17 6483
BCLllA-4853 + GGCGAGCAGGAGAGAAG 17 6484
BCLllA-4854 + GGCGAGCAGGAGAGAAGGGG 20 6485
BCLllA-4855 + GGCGCAGGGAAGAUGAAUUG 20 6486
BCLllA-4856 - GGCGCUCGCUGCGGCCACUG 20 6487
BCLllA-4857 + GGCGGCGGCGGCGGCGG 17 6488
BCLllA-4858 + GGCGGCGGCGGCGGCGGCGG 20 6489
BCLllA-4859 + GGCGGUGGCGUGGCCGG 17 6490
BCLllA-4860 + GGCGUGGCCGGGAGAGAAGA 20 6491
BCLllA-4861 + GGGAAGAUGAAUUGUGG 17 6492
BCLllA-4862 + GGGAGAGAAGAAAGGGGUGG 20 6493
BCLllA-4863 + GGGAGAGCCGGGUUAGA 17 6494
BCLllA-4864 + GGGAGAGCCGGGUUAGAAAG 20 6495
BCLllA-4865 + GGGAGGAAAGGGUGGGG 17 6496
BCLllA-4866 + GGGAGGGGCGGGCCGAG 17 6497
BCLllA-4867 + GGGAGGGGCGGGCCGAGGGG 20 6498
BCLllA-4868 + GGGAGGGGGAGGUGCGGGGC 20 6499
BCLllA-4869 + GGGCAGGGCGAGCAGGA 17 6500
BCLllA-4870 + GGGCAGGGCGAGCAGGAGAG 20 6501
BCLllA-4871 + GGGCCGAGGGGAGGGGGCGC 20 6502
BCLllA-4872 + GGGCGAGCAGGAGAGAA 17 6503
BCLllA-4873 + GGGCGAGCAGGAGAGAAGGG 20 6504
BCLllA-4874 + GGGGAGGGGCGGGCCGA 17 6505
BCLllA-4875 + GGGGAGGGGCGGGCCGAGGG 20 6506
BCLllA-4876 + GGGGAGGGGGAGGUGCGGGG 20 6507
BCLllA-4877 + GGGGAGGGGGCGCUGGGGCC 20 6508
BCLllA-4878 - GGGGCCGCGUCUGGCGUCCG 20 6509
BCLllA-4879 + GGGGCGGGCCGAGGGGA 17 6510
BCLllA-4880 + GGGGGAGGGGCGGGCCG 17 6511
BCLllA-4881 + GGGGGAGGUGCGGGGCG 17 6512
BCLllA-4882 - GGGGGCCGCGUCUGGCGUCC 20 6513
BCLllA-4883 + GGGGUGGCAGGGGUGGG 17 6514
BCLllA-4884 + GGGGUGGGAGGAAAGGG 17 6515
BCLllA-4885 + GGGGUGGGAGGAAAGGGUGG 20 6516
BCLllA-4886 + GGGUGGCAGGGGUGGGAGGA 20 6517
BCLllA-4887 + GGGUGGGAGGAAAGGGU 17 6518
BCLllA-4888 + GGGUGGGAGGAAAGGGUGGG 20 6519
BCLllA-4889 - G G U A A A AG AG A U A A AG G 17 6520
BCLllA-4890 + GGUGCGGGGCGGGGGGCUCC 20 6521 BCLllA-4891 + GGUGGGAGGAAAGGGUG 17 6522
BCLllA-4892 + GGUGGGAGGAAAGGGUGGGG 20 6523
BCLllA-4893 + GG U U AG AAAG AAGG AG ACU C 20 6524
BCLllA-4894 + GGUUUGCCUUGCUUGCG 17 6525
BCLllA-4895 - GUCGAGGU A A A AG AG A U AAA 20 6526
BCLllA-4896 + GUGGCCGGGAGAGAAGA 17 6527
BCLllA-4897 + GUGGGAGGAAAGGGUGG 17 6528
Table 11D provides exemplary targeting domains for knocking down expression of the BCLllA gene according to forth tier parameters. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 11D
Figure imgf000277_0001
BCLllA-4914 - AAAAACCCUCAUCCCAU 17 6545
BCLllA-4915 + AAAAAGAGGGAGAGAGA 17 6546
BCLllA-4916 + AAAAAGAGGGAGAGAGAGAG 20 6547
BCLllA-4917 + AAAACAUGGGCAGGGCGAGC 20 6548
BCLllA-4918 - AAAACCCUCAUCCCAUC 17 6549
BCLllA-4919 - AAAAGCGAGGGGGAGAG 17 6550
BCLllA-4920 - AAACCCCAGCACUUAAGCAA 20 6551
BCLllA-4921 + AAAGAGGGAGAGAGAGAGAA 20 6552
BCLllA-4922 + AAAGGGGUGGCAGGGGU 17 6553
BCLllA-4923 + AAAGGGGUGGCAGGGGUGGG 20 6554
BCLllA-4924 + AAAUAAUACAAAGAUGGCGC 20 6555
BCLllA-4925 + AAAUGGCAAAAGCCCCC 17 6556
BCLllA-4926 + AACAUGGGCAGGGCGAG 17 6557
BCLllA-4927 + AACAUGGGCAGGGCGAGCAG 20 6558
BCLllA-4928 - AACCCCAGCACUUAAGCAAA 20 6559
BCLllA-4929 - AACCCGGCUCUCCCGAU 17 6560
BCLllA-4930 + AAGAAAGGGGUGGCAGGGGU 20 6561
BCLllA-4931 + AAGAGAGAUAGAGGGAGAGA 20 6562
BCLllA-4932 + AAGAGGGAGAGAGAGAG 17 6563
BCLllA-4933 + AAGAUGGCGCAGGGAAG 17 6564
BCLllA-4934 - AAGCAAAAGCGAGGGGGAGA 20 6565
BCLllA-4935 + AAGCCAAUGGCCAGUGC 17 6566
BCLllA-4936 + AAGCCAAUGGCCAGUGCGGG 20 6567
BCLllA-4937 - AAUAAUAAUUAUUAAUAAUC 20 6568
BCLllA-4938 + AAUAAUACAAAGAUGGCGCA 20 6569
BCLllA-4939 - AAUAAUUAUUAAUAAUC 17 6570
BCLllA-4940 + AAUAAUUAUUAUUACUAUUA 20 6571
BCLllA-4941 + AAUACAAAGAUGGCGCA 17 6572
BCLllA-4942 + AAUGGCCAGUGCGGGGA 17 6573
BCLllA-4943 + AAUUAUUAUUACUAUUA 17 6574
BCLllA-4944 + AAUUCCCGUUUGCUUAAGUG 20 6575
BCLllA-4945 + ACAAAGAUGGCGCAGGGAAG 20 6576
BCLllA-4946 + ACAAGCCAAUGGCCAGU 17 6577
BCLllA-4947 + ACAAGCCAAUGGCCAGUGCG 20 6578
BCLllA-4948 + ACACACAAAACAUGGGCAGG 20 6579
BCLllA-4949 + ACACACAUCAGGGGCUGGAC 20 6580
BCLllA-4950 + ACAGAGACACACAAAAC 17 6581
BCLllA-4951 + ACAUGGGCAGGGCGAGC 17 6582
BCLllA-4952 + ACAUGGUGGGCUGCGGG 17 6583
BCLllA-4953 + ACCAAUGGACACACAUC 17 6584
BCLllA-4954 - ACCCCAGCACUUAAGCAAAC 20 6585
BCLllA-4955 - ACCUCCGAGAGUCGAGGUAA 20 6586 BCLllA-4956 - ACGAGAAAAACCUCCGAGAG 20 6587
BCLllA-4957 + ACGCCAGACGCGGCCCC 17 6588
BCLllA-4958 + ACGCCAGACGCGGCCCCCGG 20 6589
BCLllA-4959 + ACGCGGCCCCCGGGGGAGGG 20 6590
BCLllA-4960 + ACGGCAAUGGUUCCAGA 17 6591
BCLllA-4961 + ACGUCAGGAGUCUGGAUGGA 20 6592
BCLllA-4962 - ACU AG AAG CAAAAG CG A 17 6593
BCLllA-4963 + ACUAUUAUUGGGUUACUUAC 20 6594
BCLllA-4964 - ACUCCUGACGUUCAAGUUCG 20 6595
BCLllA-4965 - ACUGAUGAAGAUAUUUUCUC 20 6596
BCLllA-4966 + ACU UGAACGUCAGGAGU 17 6597
BCLllA-4967 - ACU UGAACUUGCAGCUC 17 6598
BCLllA-4968 - AGAAAAACCUCCGAGAG 17 6599
BCLllA-4969 + AGAAAGGGGUGGCAGGG 17 6600
BCLllA-4970 + AGAAGAAAGGGGUGGCAGGG 20 6601
BCLllA-4971 + AGAAGAGAGAUAGAGGGAGA 20 6602
BCLllA-4972 - AGAAGCAAAAGCGAGGGGGA 20 6603
BCLllA-4973 + AGAAGGGGAGGAGGGAA 17 6604
BCLllA-4974 + AGACGCGGCCCCCGGGG 17 6605
BCLllA-4975 + AGAGAAGAAAGGGGUGG 17 6606
BCLllA-4976 + AGAGAAGAGAGAUAGAGGGA 20 6607
BCLllA-4977 + AGAGAAGGGGAGGAGGG 17 6608
BCLllA-4978 + AGAGAAGGGGAGGAGGGAAG 20 6609
BCLllA-4979 + AGAGACACACAAAACAUGGG 20 6610
BCLllA-4980 + AGAGAGAAGAGAGAUAG 17 6611
BCLllA-4981 + AGAGAGAAGAGAGAUAGAGG 20 6612
BCLllA-4982 + AGAGAGAGAAGAGAGAUAGA 20 6613
BCLllA-4983 + AGAGAGAGAGAAGAGAGAUA 20 6614
BCLllA-4984 + AGAGAGAUAGAGGGAGA 17 6615
BCLllA-4985 + AGAGAUAGAGGGAGAGA 17 6616
BCLllA-4986 + AGAGCCGGGUUAGAAAG 17 6617
BCLllA-4987 + AGAGGGAGAGAGAGAGA 17 6618
BCLllA-4988 - AGAGUCCGCGUGUGUGG 17 6619
BCLllA-4989 + AGAUAGAGGGAGAGAGA 17 6620
BCLllA-4990 - AG CAAAAG CGAGGGGGA 17 6621
BCLllA-4991 - AGCAAAAGCGAGGGGGAGAG 20 6622
BCLllA-4992 + AGCAGGAGAGAAGGGGAGGA 20 6623
BCLllA-4993 + AGCCAAUGGCCAGUGCG 17 6624
BCLllA-4994 + AGCCAAUGGCCAGUGCGGGG 20 6625
BCLllA-4995 + AGGACAAGCCAAUGGCCAGU 20 6626
BCLllA-4996 - AGGACUAGAAGCAAAAGCGA 20 6627
BCLllA-4997 + AGGAGAGAAGGGGAGGA 17 6628 BCLllA-4998 + AGGAGAGAAGGGGAGGAGGG 20 6629
BCLllA-4999 + AGGGAGAGAGAGAGAGAGAG 20 6630
BCLllA-5000 + AGGGCGAGCAGGAGAGA 17 6631
BCLllA-5001 + AGGGGAAGCUCACACCA 17 6632
BCLllA-5002 + AGGGGCGGGCCGAGGGG 17 6633
BCLllA-5003 + AGGGGCUGGACAUGAAA 17 6634
BCLllA-5004 + AGGGGGAGGUGCGGGGC 17 6635
BCLllA-5005 + AGGGGUGGCAGGGGUGG 17 6636
BCLllA-5006 + AGGGGUGGGAGGAAAGG 17 6637
BCLllA-5007 + AGGGGUGGGAGGAAAGGGUG 20 6638
BCLllA-5008 - AGG U AAAAG AG AU AAAG 17 6639
BCLllA-5009 - AGUCCGCGUGUGUGGGG 17 6640
BCLllA-5010 - AGUCGAGGUAAAAGAGAUAA 20 6641
BCLllA-5011 + AGUGCGGGGAGGGGGAGGUG 20 6642
BCLllA-5012 + AUAAUACAAAGAUGGCG 17 6643
BCLllA-5013 - AUAAUCACGAGAGCGCG 17 6644
BCLllA-5014 + AUACACGGCAAUGGUUCCAG 20 6645
BCLllA-5015 + AUAGAGGGAGAGAGAGA 17 6646
BCLllA-5016 + AUCAGGGGCUGGACAUGAAA 20 6647
BCLllA-5017 + AUCGGGAGAGCCGGGUUAGA 20 6648
BCLllA-5018 + AUCUCUUU UACCUCGACUCU 20 6649
BCLllA-5019 + AUGGCCAGUGCGGGGAG 17 6650
BCLllA-5020 + AUGGGCAGGGCGAGCAG 17 6651
BCLllA-5021 + AUGGUUCCAGAUGGGAU 17 6652
BCLllA-5022 + AUUAUUGGGUUACU UAC 17 6653
BCLllA-5023 - AUUAUUUCUAAUUUAUU 17 6654
BCLllA-5024 + AUUCCCGUUUGCU UAAGUGC 20 6655
BCLllA-5025 - AUUUUAGAGUCCGCGUGUGU 20 6656
BCLllA-5026 - AUUUUUAAAUUUUUCAC 17 6657
BCLllA-5027 - AU U U U U CACG AG AAAAACCU 20 6658
BCLllA-5028 + CAAAACAUGGGCAGGGCGAG 20 6659
BCLllA-5029 - CAAAAGCGAGGGGGAGA 17 6660
BCLllA-5030 + CAAGCCAAUGGCCAGUG 17 6661
BCLllA-5031 + CAAUGGACACACAUCAGGGG 20 6662
BCLllA-5032 + CAAUGGCCAGUGCGGGG 17 6663
BCLllA-5033 + CAAUGGCCAGUGCGGGGAGG 20 6664
BCLllA-5034 + CAAUGGUUCCAGAUGGG 17 6665
BCLllA-5035 + CACAAAACAUGGGCAGG 17 6666
BCLllA-5036 + CACACCAAUGGACACACAUC 20 6667
BCLllA-5037 + CACACGCGGACUCUAAA 17 6668
BCLllA-5038 + CACAUCAGGGGCUGGAC 17 6669
BCLllA-5039 + CACCAAUGGACACACAU 17 6670 BCLllA-5040 + CACGGCAAUGGUUCCAG 17 6671
BCLllA-5041 - CACUGAUGAAGAUAUU UUCU 20 6672
BCLllA-5042 - CACUUGAACUUGCAGCU 17 6673
BCLllA-5043 - CACUUGAACUUGCAGCUCAG 20 6674
BCLllA-5044 - CAGGACUAGAAG C A A A A 17 6675
BCLllA-5045 - CAGGACUAGAAGCAAAAGCG 20 6676
BCLllA-5046 + CAGGAGAGAAGGGGAGG 17 6677
BCLllA-5047 + CAGGGAAGAUGAAUUGU 17 6678
BCLllA-5048 + CAGGGCGAGCAGGAGAG 17 6679
BCLllA-5049 + CAGGGCGAGCAGGAGAGAAG 20 6680
BCLllA-5050 + CAGGGGUGGGAGGAAAGGGU 20 6681
BCLllA-5051 + CAGUGCGGGGAGGGGGAGGU 20 6682
BCLllA-5052 - CAUGCAUUUUUAAAUU UUUC 20 6683
BCLllA-5053 + CAUGGGCAGGGCGAGCAGGA 20 6684
BCLllA-5054 - CAUUUUAGAGUCCGCGUGUG 20 6685
BCLllA-5055 + CCAAUGGCCAGUGCGGG 17 6686
BCLllA-5056 + CCAAUGGCCAGUGCGGGGAG 20 6687
BCLllA-5057 + CCACACACGCGGACUCUAAA 20 6688
BCLllA-5058 + CCAGACGCGGCCCCCGG 17 6689
BCLllA-5059 + CCAGACGCGGCCCCCGGGGG 20 6690
BCLllA-5060 - CC AG C ACU U AAG CAAAC 17 6691
BCLllA-5061 - CCAUUGCCGUGUAUGCACUU 20 6692
BCLllA-5062 - CCCAG CAC U U AAG C AAA 17 6693
BCLllA-5063 - CCCCAGCACUUAAGCAA 17 6694
BCLllA-5064 + CCCCGGGGGAGGGGCGGGCC 20 6695
BCLllA-5065 - CCCCUCGGCCCGCCCCUCCC 20 6696
BCLllA-5066 + CCCGGGGGAGGGGCGGG 17 6697
BCLllA-5067 + CCCGGGGGAGGGGCGGGCCG 20 6698
BCLllA-5068 + CCCGUUUGCUUAAGUGC 17 6699
BCLllA-5069 - CCCUCGGCCCGCCCCUCCCC 20 6700
BCLllA-5070 + CCCUGCUCCCCCCCACACAC 20 6701
BCLllA-5071 + CCGAGGGGAGGGGGCGC 17 6702
BCLllA-5072 - CCGCACUUGAACUUGCAGCU 20 6703
BCLllA-5073 + CCGCGGCGGUGGCGUGG 17 6704
BCLllA-5074 + CCGGGGGAGGGGCGGGCCGA 20 6705
BCLllA-5075 - CCUCGGCCCGCCCCUCCCCC 20 6706
BCLllA-5076 - CCUGACGU UCAAGUUCG 17 6707
BCLllA-5077 + CCUGAGCUG CAAG U U CA AG U 20 6708
BCLllA-5078 - CCUGAUGUGUGUCCAUUGGU 20 6709
BCLllA-5079 + CGAACUUGAACGUCAGGAGU 20 6710
BCLllA-5080 + CGAGACAUGGUGGGCUG 17 6711
BCLllA-5081 + CGAGCAGGAGAGAAGGG 17 6712 BCLllA-5082 + CGAGCAGGAGAGAAGGGGAG 20 6713
BCLllA-5083 - CGAGGUAAAAGAGAUAA 17 6714
BCLllA-5084 - CGAGGUAAAAGAGAUAAAGG 20 6715
BCLllA-5085 - CGCACUUGAACUUGCAGCUC 20 6716
BCLllA-5086 + CGCAGGGAAGAUGAAU U 17 6717
BCLllA-5087 + CGCCAGACGCGGCCCCC 17 6718
BCLllA-5088 + CGCCGCGGCGGUGGCGUGGC 20 6719
BCLllA-5089 + CGCGGCGGUGGCGUGGC 17 6720
BCLllA-5090 + CGCGGCGGUGGCGUGGCCGG 20 6721
BCLllA-5091 + CGGACGCCAGACGCGGCCCC 20 6722
BCLllA-5092 + CGGCAAUGGUUCCAGAUGGG 20 6723
BCLllA-5093 + CGGCCCCCGGGGGAGGG 17 6724
BCLllA-5094 - CGGCCCGCCCCUCCCCC 17 6725
BCLllA-5095 + CGGCGAGACAUGGUGGGCUG 20 6726
BCLllA-5096 + CGGCGGCGGCGGCGGCG 17 6727
BCLllA-5097 + CGGCGGCGGCGGCGGCGGCG 20 6728
BCLllA-5098 + CGGCGGUGGCGUGGCCGGGA 20 6729
BCLllA-5099 + CGGGCCGAGGGGAGGGGGCG 20 6730
BCLllA-5100 + CGGGCUCACCAGUGGCCGCA 20 6731
BCLllA-5101 + CGGGGAGGGGGAGGUGCGGG 20 6732
BCLllA-5102 + CGGGGGAGGGGCGGGCC 17 6733
BCLllA-5103 + CGGGGGAGGGGCGGGCCGAG 20 6734
BCLllA-5104 + CGGUGGCGUGGCCGGGA 17 6735
BCLllA-5105 + CGGUGGCGUGGCCGGGAGAG 20 6736
BCLllA-5106 - CUAGAAGCAAAAGCGAG 17 6737
BCLllA-5107 - CUAGAAGCAAAAGCGAGGGG 20 6738
BCLllA-5108 - CUCCUGACGU UCAAGUUCGC 20 6739
BCLllA-5109 - CUCGGCCCGCCCCUCCC 17 6740
BCLllA-5110 + CUCUUUUACCUCGACUC 17 6741
BCLllA-5111 - CUGACGUUCAAGUUCGC 17 6742
BCLllA-5112 + CUUGAACGUCAGGAGUCUGG 20 6743
BCLllA-5113 - CUUGAACUUGCAGCUCA 17 6744
BCLllA-5114 + CUUGCUUGCGGCGAGACAUG 20 6745
BCLllA-5115 - U AAU AAU U AU U AAU AAU CAC 20 6746
BCLllA-5116 + UAAUACAAAGAUGGCGC 17 6747
BCLllA-5117 - U AAU U AU U AAU AAU CAC 17 6748
BCLllA-5118 + UACACGGCAAUGGUUCCAGA 20 6749
BCLllA-5119 + UAGAAAGAAGGAGACUC 17 6750
BCLllA-5120 - UAGAAGCAAAAGCGAGG 17 6751
BCLllA-5121 - UAGAGUCCGCGUGUGUG 17 6752
BCLllA-5122 - UAGAGUCCGCGUGUGUGGGG 20 6753
BCLllA-5123 + UAUCUCUU UUACCUCGACUC 20 6754 BCLllA-5124 + UAUUAUUGGGUUACUUACGC 20 6755
BCLllA-5125 + UAUUGGGUUACUUACGC 17 6756
BCLllA-5126 + UCACACCAAUGGACACACAU 20 6757
BCLllA-5127 - UCACGAGAAAAACCUCC 17 6758
BCLllA-5128 + UCAGGAGUCUGGAUGGA 17 6759
BCLllA-5129 - UCAUUUUAGAGUCCGCGUGU 20 6760
BCLllA-5130 + UCCCGU UUGCUUAAGUG 17 6761
BCLllA-5131 - UCCGAGAGUCGAGGUAA 17 6762
BCLllA-5132 - UCCGCGUGUGUGGGGGGGAG 20 6763
BCLllA-5133 - UCGAGGUAAAAGAGAUA 17 6764
BCLllA-5134 - U CG AGG U AAAAG AG AU AAAG 20 6765
BCLllA-5135 - UCGGCCCGCCCCUCCCC 17 6766
BCLllA-5136 - UCUAACCCGGCUCUCCCGAU 20 6767
BCLllA-5137 + UCUCGGAGGU UUUUCUC 17 6768
BCLllA-5138 + UCU UUUACCUCGACUCU 17 6769
BCLllA-5139 + UGACAUCCAAAAUAAAU 17 6770
BCLllA-5140 - UGAUGAAGAUAUUUUCU 17 6771
BCLllA-5141 - UGCAUUUUUAAAUUUU UCAC 20 6772
BCLllA-5142 + UGCGGGGAGGGGGAGGU 17 6773
BCLllA-5143 + UGCUCCCCCCCACACAC 17 6774
BCLllA-5144 + UGGACACACAUCAGGGG 17 6775
BCLllA-5145 + UGGACAGAGACACACAAAAC 20 6776
BCLllA-5146 + UGGCAGGGGUGGGAGGA 17 6777
BCLllA-5147 + UGGCCAGUGCGGGGAGG 17 6778
BCLllA-5148 + UGGCCGGGAGAGAAGAA 17 6779
BCLllA-5149 + UGGCGCAGGGAAGAUGAAUU 20 6780
BCLllA-5150 + UGGCGUGGCCGGGAGAG 17 6781
BCLllA-5151 + UGGGAGGAAAGGGUGGG 17 6782
BCLllA-5152 + UGGGGUUUGCCUUGCUUGCG 20 6783
BCLllA-5153 - UGUAUUAUUUCUAAU UUAUU 20 6784
BCLllA-5154 - U UAAUAAUCACGAGAGCGCG 20 6785
BCLllA-5155 + UUAGAAAGAAGGAGACUCCA 20 6786
BCLllA-5156 - U UAGAGUCCGCGUGUGU 17 6787
BCLllA-5157 - UUAGAGUCCGCGUGUGUGGG 20 6788
BCLllA-5158 - U UGAACUUGCAGCUCAG 17 6789
BCLllA-5159 - U UGCCGUGUAUGCACU U 17 6790
BCLllA-5160 - U UGGAUGUCAAAAGGCACUG 20 6791
BCLllA-5161 - U UUAGAGUCCGCGUGUG 17 6792
BCLllA-5162 - UUUAGAGUCCGCGUGUGUGG 20 6793
BCLllA-5163 - U U U CACG AG AAAAACCU 17 6794
BCLllA-5164 - UUUUAGAGUCCGCGUGU 17 6795
BCLllA-5165 - U UUUAGAGUCCGCGUGUGUG 20 6796 BCLllA-5166 - UUUUCACGAGAAAAACCUCC 20 6797
BCLllA-5167 + U U U UG ACAU CCAAAAU AAAU 20 6798
Table 12 provides exemplary targeting domains for knocking down expression of the BCL11A gene. The targeting domains bind between 500bp upstream and 500bp downstream of transcription start site. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidismeningitidis eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a N. meningitidismeningitidis eiCas9 fused to a
transcriptional repressor to decrease transcription and therefore downregulate gene expression. Table 12
Figure imgf000284_0001
Table 13A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, good orthogonality and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: HBB-9 and HBB-11, HBB-9 and HBB-39, HBB-20 and HBB-11 and HBB-20 and HBB-39.
Table 13A
Figure imgf000285_0001
Table 13B provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 13B
Figure imgf000285_0002
Table 13C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the third tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 13C
Figure imgf000286_0001
Table 13D provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the fourth tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, and do not start with G. It is
contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 13D
Figure imgf000287_0001
HBB-47 - UGCCGU UACUGCCCUG U 17 6849
H BB-48 - UGGGCAGG U UGG UAUCA 17 6850
H BB-49 - UGG U AU CAAGG U U ACAAG AC 20 6851
H BB-50 - UGG UGAGGCCCUGGGCAGGU 20 6852
H BB-51 + U UGAUACCAACCUGCCC 17 6853
H BB-52 - U UGG UGG UGAGGCCCUGGGC 20 6854
Table 14A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, good orthogonality and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: HBB-9 and HBB-11, HBB-9 and HBB-39, HBB-20 and HBB-11 and HBB-20 and HBB-39.
Table 14A
Figure imgf000288_0001
Table 14B provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 14B
Figure imgf000289_0001
Table 14C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the fifth tier parameters. The targeting domains bind within lOObp upstream and lOObp downstream of the target position and PAM is NNGRRV. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 14C
Figure imgf000289_0002
HBB-56 - AAGUCUGCCGU UACUGCCCU 20 6858
HBB-57 + AACCUUGAUACCAACCUGCC 20 6859
HBB-58 + UCCACGU UCACCUUGCCCCA 20 6860
HBB-59 + GCUAGUGAACACAGUUGUGU 20 6861
HBB-60 - CCAUGGUGCACCUGACUCCU 20 6862
HBB-61 - CAUGGUGCACCUGACUCCUG 20 6863
HBB-62 + AGGUGCACCAUGGUGUCUGU 20 6864
HBB-63 - UGGUGCACCUGACUCCUGUG 20 6865
HBB-64 - GAACGUGGAUGAAGUUGGUG 20 6866
HBB-65 - UUACUGCCCUGUGGGGCAAG 20 6867
HBB-66 + GUGUCUGUU UGAGGUUGCUA 20 6868
HBB-67 - GUGGGGCAAGGUGAACGUGG 20 6869
HBB-68 - AUGAAGUUGGUGGUGAGGCC 20 6870
HBB-69 + AGUAACGGCAGACUUCUCCA 20 6871
Table 15A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 15A
Figure imgf000290_0001
BCLllA-5331 - CAUCCAGGUCACGCCAG 17 6885
BCLllA-5332 - UUAUCAACGUCAUCUAG 17 6886
BCLllA-5333 + GAGCUCCCAACGGGCCG 17 6887
BCLllA-5334 + UGCACUCAUCCCAGGCG 17 6888
BCLllA-5335 + AGACAUGGUGGGCUGCG 17 6889
BCLllA-5336 + CGU UUGCUUAAGUGCUG 17 6890
BCLllA-5337 + GCU UUUUUCAUCUCGAU 17 6891
BCLllA-5338 + CCGUU UGCUUAAGUGCU 17 6892
BCLllA-5339 - UCCAAUCCCGUGGAGGU 17 6893
BCLllA-5340 + U UGCGGCGAGACAUGGU 17 6894
BCLllA-5341 - AUGACCUCCUCACCUGU 17 6895
BCLllA-5342 - U UAUUUUUAUCGAGCACAAA 20 6896
BCLllA-5343 + UCCCCUUCUGGAGCUCCCAA 20 6897
BCLllA-5344 + U UUUCAUCUCGAUUGGUGAA 20 6898
BCLllA-5345 + GCCUUGCU UGCGGCGAGACA 20 6899
BCLllA-5346 - ACCAUGUCUCGCCGCAAGCA 20 6900
BCLllA-5347 + GAGCUCCAUGUGCAGAACGA 20 6901
BCLllA-5348 - UCACAGAUAAACUUCUGCAC 20 6902
BCLllA-5349 + CGUCAUCCUCUGGCGUGACC 20 6903
BCLllA-5350 - GGAGCUCUAAUCCCCACGCC 20 6904
BCLllA-5351 - UCCCGUGGAGGUUGGCAUCC 20 6905
BCLllA-5352 + AUUCCCGU UUGCUUAAGUGC 20 6906
BCLllA-5353 + CCCCCAAUGGGAAGUUCAUC 20 6907
BCLllA-5354 + GCUCCCAACGGGCCGUGGUC 20 6908
BCLllA-5355 + U UUCAUCUCGAUUGGUGAAG 20 6909
BCLllA-5356 - UGUUUAUCAACGUCAUCUAG 20 6910
BCLllA-5357 + AGAGCUCCAUGUGCAGAACG 20 6911
BCLllA-5358 - GAAAAAAGCAUCCAAUCCCG 20 6912
BCLllA-5359 + GCGAGACAUGGUGGGCUGCG 20 6913
BCLllA-5360 - CAGAUAAACUUCUGCACUGG 20 6914
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 6915
BCLllA-5362 + CUGCACUCAUCCCAGGCGUG 20 6916
BCLllA-5363 - UGAACCAGACCACGGCCCGU 20 6917
BCLllA-5364 - GCAUCCAAUCCCGUGGAGGU 20 6918
BCLllA-5365 + UGCUUGCGGCGAGACAUGGU 20 6919
BCLllA-5366 + UCAAGAGGCUCGGCUGUGGU 20 6920
BCLllA-5367 - AUCAUGACCUCCUCACCUGU 20 6921
Table 15B provides exemplary targeting domains for knocking out the BCLllA gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 15B
Figure imgf000292_0001
BCLllA-5400 - GUUGGGAGCUCCAGAAG 17 6954
BCLllA-5401 + CAGCU UUUUCUAAGCAG 17 6955
BCLllA-5402 + UCCAUGUGCAGAACGAG 17 6956
BCLllA-2671 + CAGAACGAGGGGAGGAG 17 6957
BCLllA-5403 - AAACUUCUGCACUGGAG 17 6958
BCLllA-5404 + GCUCCAUGUGCAGAACG 17 6959
BCLllA-5405 - AAAAGCAUCCAAUCCCG 17 6960
BCLllA-5406 + CUUACAAAUACCCUGCG 17 6961
BCLllA-5407 + AUUGGUGAAGGGGAAGG 17 6962
BCLllA-5408 + ACUGCCCACAGGUGAGG 17 6963
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 6964
BCLllA-5409 + UGCGGGGCGGGCGGCGG 17 6965
BCLllA-5410 + GGCUGCGGGGCGGGCGG 17 6966
BCLllA-5411 + GUGGGCUGCGGGGCGGG 17 6967
BCLllA-5412 + AUGUGCAGAACGAGGGG 17 6968
BCLllA-5413 + CAUGGUGGGCUGCGGGG 17 6969
BCLllA-5414 + CUUGCGGCGAGACAUGG 17 6970
BCLllA-5415 - AUAAACUUCUGCACUGG 17 6971
BCLllA-5416 - AGCAUCCAAUCCCGUGG 17 6972
BCLllA-5417 - GAUGAACUUCCCAUUGG 17 6973
BCLllA-5418 - CAUGACCUCCUCACCUG 17 6974
BCLllA-5419 + AACUUACAAAUACCCUG 17 6975
BCLllA-5420 - CUGCUUAGAAAAAGCUG 17 6976
BCLllA-5421 + UUCAAGAGGCUCGGCUG 17 6977
BCLllA-5422 + CGAGACAUGGUGGGCUG 17 6978
BCLllA-5423 + CACUCAUCCCAGGCGUG 17 6979
BCLllA-5424 + GGCACUGCCCACAGGUG 17 6980
BCLllA-5425 - AGAUGAACUUCCCAUUG 17 6981
BCLllA-5426 + GGGGUUUGCCUUGCUUG 17 6982
BCLllA-5427 + CUAUGUGUUCCUGUU UG 17 6983
BCLllA-5428 + UAAGAAUGUCCCCCAAU 17 6984
BCLllA-5429 - CCAGAUGAACUUCCCAU 17 6985
BCLllA-5430 + GCCAACCUCCACGGGAU 17 6986
BCLllA-5431 + AUUAUUAUUACUAUUAU 17 6987
BCLllA-5432 - CUCUAAUCCCCACGCCU 17 6988
BCLllA-5433 + AAUGGCUUCAAGAGGCU 17 6989
BCLllA-5434 + GUACAUGUGUAGCUGCU 17 6990
BCLllA-5435 - ACCAGACCACGGCCCGU 17 6991
BCLllA-5436 + GCACUCAUCCCAGGCGU 17 6992
BCLllA-5437 + AGAGGCUCGGCUGUGGU 17 6993
BCLllA-5438 - CAGAUGAACUUCCCAUU 17 6994
BCLllA-5439 + U UAUUAUUACUAUUAU U 17 6995 BCLllA-5440 - CCAGACCACGGCCCGUU 17 6996
BCLllA-5441 + UGCUAUGUGUUCCUGU U 17 6997
BCLllA-5442 + GCUAUGUGUUCCUGUU U 17 6998
BCLllA-5443 - AACCCCAGCACU UAAGCAAA 20 6999
BCLllA-5444 + AAAAUAAGAAUGUCCCCCAA 20 7000
BCLllA-5445 - C ACAA ACG G AAAC AAU G CAA 20 7001
BCLllA-5446 + UGGUUCAUCAUCUGUAAGAA 20 7002
BCLllA-5447 - GCCCGUUGGGAGCUCCAGAA 20 7003
BCLllA-5448 - UCCUCCCCUCGUUCUGCACA 20 7004
BCLllA-5449 - ACAGAUGAUGAACCAGACCA 20 7005
BCLllA-5450 + GACCUGGAUGCCAACCUCCA 20 7006
BCLllA-5451 - U AG C AG G U AAA U G AG A AG C A 20 7007
BCLllA-5452 - AGUGCAGAAUAUGCCCCGCA 20 7008
BCLllA-5453 - GGCCCGUUGGGAGCUCCAGA 20 7009
BCLllA-5454 + AUCUCGAUUGGUGAAGGGGA 20 7010
BCLllA-5455 - AGAUAAACUUCUGCACUGGA 20 7011
BCLllA-5456 + UUUUUCAUCUCGAUUGGUGA 20 7012
BCLllA-5457 - UAGAGGAAUUUGCCCCAAAC 20 7013
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 7014
BCLllA-5459 + CCCCU UCUGGAGCUCCCAAC 20 7015
BCLllA-5460 + GU UCAUCUGGCACUGCCCAC 20 7016
BCLllA-5461 + ACCUGGAUGCCAACCUCCAC 20 7017
BCLllA-5462 + GCAUAUUCUGCACUCAUCCC 20 7018
BCLllA-5463 - CCCAAACAGGAACACAUAGC 20 7019
BCLllA-5464 - GAGUGCAGAAUAUGCCCCGC 20 7020
BCLllA-5465 + GACAUGGUGGGCUGCGGGGC 20 7021
BCLllA-5466 + UCAACUUACAAAUACCCUGC 20 7022
BCLllA-5467 + AGUUGUACAUGUGUAGCUGC 20 7023
BCLllA-5468 + GGCGAGACAUGGUGGGCUGC 20 7024
BCLllA-5469 - UUGGUGUUGUAU UAUUUUGC 20 7025
BCLllA-5470 + GAUAAACAAUCGUCAUCCUC 20 7026
BCLllA-5471 + AGGAGGUCAUGAUCCCCUUC 20 7027
BCLllA-5472 + UCUGUAAGAAUGGCUUCAAG 20 7028
BCLllA-5473 - CCCGUUGGGAGCUCCAGAAG 20 7029
BCLllA-5474 - UGGCAUCCAGGUCACGCCAG 20 7030
BCLllA-5475 + CCACAG CU U U U U CU AAG CAG 20 7031
BCLllA-5476 + AGCUCCAUGUGCAGAACGAG 20 7032
BCLllA-5477 + GUGCAGAACGAGGGGAGGAG 20 7033
BCLllA-5478 - GAUAAACUUCUGCACUGGAG 20 7034
BCLllA-5479 + CUGGAGCUCCCAACGGGCCG 20 7035
BCLllA-5480 + UUCUGCACUCAUCCCAGGCG 20 7036
BCLllA-5481 + CAACUUACAAAUACCCUGCG 20 7037 BCLllA-5482 + UCGAUUGGUGAAGGGGAAGG 20 7038
BCLllA-5483 + GGCACUGCCCACAGGUGAGG 20 7039
BCLllA-5484 + UGCGGGGCGGGCGGCGGCGG 20 7040
BCLllA-5485 + GGCUGCGGGGCGGGCGGCGG 20 7041
BCLllA-5486 + GUGGGCUGCGGGGCGGGCGG 20 7042
BCLllA-5487 + AUGGUGGGCUGCGGGGCGGG 20 7043
BCLllA-5488 + UCCAUGUGCAGAACGAGGGG 20 7044
BCLllA-5489 + AGACAUGGUGGGCUGCGGGG 20 7045
BCLllA-5490 + U UGCUUGCGGCGAGACAUGG 20 7046
BCLllA-5491 - AAAAGCAUCCAAUCCCGUGG 20 7047
BCLllA-5492 - CCAGAUGAACUUCCCAUUGG 20 7048
BCLllA-5493 - GAUCAUGACCUCCUCACCUG 20 7049
BCLllA-5494 + CUCAACUUACAAAUACCCUG 20 7050
BCLllA-5495 - CCUCUGCUUAGAAAAAGCUG 20 7051
BCLllA-5496 + GGCU UCAAGAGGCUCGGCUG 20 7052
BCLllA-5497 + UCCCGUU UGCUUAAGUGCUG 20 7053
BCLllA-5498 + UCUGGCACUGCCCACAGGUG 20 7054
BCLllA-5499 - GCCAGAUGAACUUCCCAUUG 20 7055
BCLllA-5500 + GCUGGGGUUUGCCUUGCUUG 20 7056
BCLllA-5501 + CUGCUAUGUGUUCCUGUUUG 20 7057
BCLllA-5502 + AAAUAAGAAUGUCCCCCAAU 20 7058
BCLllA-5503 - GUGCCAGAUGAACUUCCCAU 20 7059
BCLllA-5504 + GAUGCUUUUU UCAUCUCGAU 20 7060
BCLllA-5505 + GAUGCCAACCUCCACGGGAU 20 7061
BCLllA-5506 - GAGCUCUAAUCCCCACGCCU 20 7062
BCLllA-5507 + AAGAAUGGCUUCAAGAGGCU 20 7063
BCLllA-5508 + GU UGUACAUGUGUAGCUGCU 20 7064
BCLllA-5509 + U UCCCGUUUGCU UAAGUGCU 20 7065
BCLllA-5510 + UCUGCACUCAUCCCAGGCGU 20 7066
BCLllA-5511 - UGCCAGAUGAACUUCCCAUU 20 7067
BCLllA-5512 - G AACCAG ACCACGG CCCG U U 20 7068
BCLllA-5513 + ACCUGCUAUGUGUUCCUGUU 20 7069
BCLllA-5514 + CCUGCUAUGUGUUCCUGUUU 20 7070
Table 15C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 15C
Figure imgf000296_0001
BCLllA-5548 - CUGCCCGACGUCAUGCA 17 7106
BCLllA-5549 + CUCGCUGAAGUGCUGCA 17 7107
BCLllA-5550 - AG CCA U U CACC AG U G CA 17 7108
BCLllA-5551 - CACG CAC AG AACAC U C A 17 7109
BCLllA-5552 + GUCGGACUUGACCGUCA 17 7110
BCLllA-5553 + ACCAACCCGCGGGGUCA 17 7111
BCLllA-5554 - AGGCCCAGCUCAAAAGA 17 7112
BCLllA-5555 - GCUUCCGGCCUGGCAGA 17 7113
BCLllA-5556 - CCUGGGGGCGGAAGAGA 17 7114
BCLllA-5557 + CUUGAUGCGCUUAGAGA 17 7115
BCLllA-5558 - GCUGACGGAGAGCGAGA 17 7116
BCLllA-5559 - GCGCAUCAAGCUCGAGA 17 7117
BCLllA-5560 - UCGGACCGCAUAGACGA 17 7118
BCLllA-5561 - ACGGUCAAGUCCGACGA 17 7119
BCLllA-5562 - CACCUGGCCGAGGCCGA 17 7120
BCLllA-5563 + GUCUCCGAAGCUAAGGA 17 7121
BCLllA-5564 + GGGGGGCGUCGCCAGGA 17 7122
BCLllA-5565 + AGGUUGGAGACAGAGGA 17 7123
BCLllA-5566 + GGGCGGAUUGCAGAGGA 17 7124
BCLllA-5567 + GGGGCUGGGAGGGAGGA 17 7125
BCLllA-5568 - CCGGGGAGCUGGACGGA 17 7126
BCLllA-5569 - GUGUGGCAGUUUUCGGA 17 7127
BCLllA-5570 + GGAUUGCAGAGGAGGGA 17 7128
BCLllA-5571 + UUGACCGGGGGCUGGGA 17 7129
BCLllA-5572 + UGGAGAGGUGGCUGGGA 17 7130
BCLllA-5573 - CCGCCCGGGGAGCUGGA 17 7131
BCLllA-5574 - GCGGCACGGGAAGUGGA 17 7132
BCLllA-5575 + GCCCAGGACCUGGUGGA 17 7133
BCLllA-5576 - CAAAUCGUCCCCCAUGA 17 7134
BCLllA-5577 + UCUGCACCUAGUCCUGA 17 7135
BCLllA-5578 - GGAGGAGGAGGAGCUGA 17 7136
BCLllA-5579 + CAAAGGCACUCGGGUGA 17 7137
BCLllA-5580 + GGCCCGGACCACUAAUA 17 7138
BCLllA-5581 + GCAGUAACCUUUGCAUA 17 7139
BCLllA-5582 - AGCGAGAGGGUGGACUA 17 7140
BCLllA-5583 + UGGAGUCUCCGAAGCUA 17 7141
BCLllA-5584 - GUUGAAUCCAAUGGCUA 17 7142
BCLllA-5585 + CACAGGUUGCACUUGUA 17 7143
BCLllA-5586 + AAUUUUCUCAGAACU UA 17 7144
BCLllA-5587 + UCGGUGGUGGACUAAAC 17 7145
BCLllA-5588 - ACCUGAUCCCGGAGAAC 17 7146
BCLllA-5589 - AGCACUCCUCGGAGAAC 17 7147 BCLllA-2979 - CACCGGCGCAGCCACAC 17 7148
BCLllA-2916 - CCGAGGCCGAGGGCCAC 17 7149
BCLllA-5590 + UGCACGCGUGGUCGCAC 17 7150
BCLllA-5591 - UCGGGGCGCAGCGGCAC 17 7151
BCLllA-5592 + CAAGAGAAACCAUGCAC 17 7152
BCLllA-5593 - GCAACCUGGUGGUGCAC 17 7153
BCLllA-5594 + GCAGCAGCUUU UUGGAC 17 7154
BCLllA-5595 + CAUGACUUGGACUUGAC 17 7155
BCLllA-5596 - ACCCGAGUGCCU UUGAC 17 7156
BCLllA-5597 - CAAAUUUCAGAGCAACC 17 7157
BCLllA-5598 - GCCAGCUCCCCGGAACC 17 7158
BCLllA-5599 + UGCGCCGGUGCACCACC 17 7159
BCLllA-5600 - GCAUAAGCGCGGCCACC 17 7160
BCLllA-5601 - CAGCGAGGCCUUCCACC 17 7161
BCLllA-5602 + GCUUCUCGCCCAGGACC 17 7162
BCLllA-5603 + AUGACUUGGACUUGACC 17 7163
BCLllA-5604 - AACCUGCUAAGAAUACC 17 7164
BCLllA-5605 + AAGGGCGGCUUGCUACC 17 7165
BCLllA-5606 - CGACCACGCGUGCACCC 17 7166
BCLllA-5607 - GAAAAU U UG AAG CCCCC 17 7167
BCLllA-5608 + CCAUCUCU UCCGCCCCC 17 7168
BCLllA-5609 - UCCUCCCUCCCAGCCCC 17 7169
BCLllA-5610 - GGAGUUCGACCUGCCCC 17 7170
BCLllA-5611 + CCUCCGUCCAGCUCCCC 17 7171
BCLllA-5612 - GGCCGCGGCUGCUCCCC 17 7172
BCLllA-5613 - AGCCCACCGCUGUCCCC 17 7173
BCLllA-5614 - GCUUCUCCACACCGCCC 17 7174
BCLllA-5615 + CCGAGGCCGACUCGCCC 17 7175
BCLllA-5616 + GCU UAUGCUUCUCGCCC 17 7176
BCLllA-5617 - AUUAGUGGUCCGGGCCC 17 7177
BCLllA-5618 - GGCGGAAGAGAUGGCCC 17 7178
BCLllA-5619 + U UGAGCUGGGCCUGCCC 17 7179
BCLllA-5620 - CUCCACCGCCAGCUCCC 17 7180
BCLllA-5621 + CCCUCCGUCCAGCUCCC 17 7181
BCLllA-5622 - UGGCCGCGGCUGCUCCC 17 7182
BCLllA-5623 - CUGCAACCAUUCCAGCC 17 7183
BCLllA-5624 - CGGCUUCGGGCUGAGCC 17 7184
BCLllA-5625 - CGCUUCUCCACACCGCC 17 7185
BCLllA-5626 - CCACCGCAUAGAGCGCC 17 7186
BCLllA-5627 + CCCGAGGCCGACUCGCC 17 7187
BCLllA-5628 + GGAGGGGGGGCGUCGCC 17 7188
BCLllA-5629 + AUAGGGCUGGGCCGGCC 17 7189 BCLllA-5630 - GAGAGAGGCUUCCGGCC 17 7190
BCLllA-5631 + UGUUGGGCAUCGCGGCC 17 7191
BCLllA-5632 + GGCCCUCGGCCUCGGCC 17 7192
BCLllA-5633 + CUGGGCCUGCCCGGGCC 17 7193
BCLllA-5634 - UAUUAGUGGUCCGGGCC 17 7194
BCLllA-5635 + GCU UCAGCUUGCUGGCC 17 7195
BCLllA-5636 + UCGGGUGAUGGGUGGCC 17 7196
BCLllA-5637 + UUUGAGCUGGGCCUGCC 17 7197
BCLllA-5638 + GGGAUCUUUGAGCUGCC 17 7198
BCLllA-5639 + GAAAGCGCCCUUCUGCC 17 7199
BCLllA-5640 + ACCAAGUCGCUGGUGCC 17 7200
BCLllA-5641 + UCUCUCGAUACUGAUCC 17 7201
BCLllA-5642 - CGACCCCAACCUGAUCC 17 7202
BCLllA-5643 + GGUGGCGCGCCGCCUCC 17 7203
BCLllA-5644 - CCGGCUACGCGGCCUCC 17 7204
BCLllA-5645 + CCUCGUCCCCGUUCUCC 17 7205
BCLllA-5646 - GGCCUUCCACCAGGUCC 17 7206
BCLllA-5647 - CCCCAUAU UAGUGGUCC 17 7207
BCLllA-5648 - UAGCAAGCCGCCCU UCC 17 7208
BCLllA-5649 + CGCUGGUGCCGGGUUCC 17 7209
BCLllA-5650 - UAGGAGACUUAGAGAGC 17 7210
BCLllA-5651 + GAAGGGGCUCAGCGAGC 17 7211
BCLllA-2886 - CACACCGCCCGGGGAGC 17 7212
BCLllA-5652 + GCCGGGU UCCGGGGAGC 17 7213
BCLllA-5653 + UCUGCCCUCU UUUGAGC 17 7214
BCLllA-5654 + CCUGGAGGCCGCGUAGC 17 7215
BCLllA-5655 + AUCCUGGUAUUCUUAGC 17 7216
BCLllA-5656 + AAGGGAUACCAACCCGC 17 7217
BCLllA-5657 - AAGUCCCCUGACCCCGC 17 7218
BCLllA-5658 + CGCCCGUGUGGCUGCGC 17 7219
BCLllA-5659 + UAUGCGGUCCGACUCGC 17 7220
BCLllA-5660 - CCACGAGAACAGCUCGC 17 7221
BCLllA-5661 - UACUCGCAGUGGCUCGC 17 7222
BCLllA-5662 + GCUGCCCACCAAGUCGC 17 7223
BCLllA-5663 - CACCGCUGUCCCCAGGC 17 7224
BCLllA-5664 + GCGCCCUUCUGCCAGGC 17 7225
BCLllA-5665 + GUGUUGGGCAUCGCGGC 17 7226
BCLllA-5666 + UAACCUUUGCAUAGGGC 17 7227
BCLllA-5667 - GUGGUCCGGGCCCGGGC 17 7228
BCLllA-5668 + CCUGCAUGACGUCGGGC 17 7229
BCLllA-5669 + UGGACUUGACCGGGGGC 17 7230
BCLllA-5670 + GCAUCGCGGCCGGGGGC 17 7231 BCLllA-5671 + U UUGCAUAGGGCUGGGC 17 7232
BCLllA-5672 + CUAGAGAAAUCCAUGGC 17 7233
BCLllA-5673 + GCGGCUUGCUACCUGGC 17 7234
BCLllA-5674 - AGACUUAGAGAGCUGGC 17 7235
BCLllA-5675 + UCCCAUGGAGAGGUGGC 17 7236
BCLllA-5676 - GACGAAGACUCGGUGGC 17 7237
BCLllA-5677 - CCUGCCCGACGUCAUGC 17 7238
BCLllA-5394 + UGUACAUGUGUAGCUGC 17 7239
BCLllA-5678 + GGACUUGAGCGCGCUGC 17 7240
BCLllA-5679 - GUCCAAAAAGCUGCUGC 17 7241
BCLllA-5680 + CACCAAGUCGCUGGUGC 17 7242
BCLllA-5681 + GUGGCGCU UCAGCUUGC 17 7243
BCLllA-5682 + CCCCGUUCUCCGGGAUC 17 7244
BCLllA-5683 + CCCUGUCAAAGGCACUC 17 7245
BCLllA-5684 - CCGGGCGAGUCGGCCUC 17 7246
BCLllA-5685 - CUGGACGGAGGGAUCUC 17 7247
BCLllA-5686 + ACACAUCUUGAGCUCUC 17 7248
BCLllA-5687 + UCCUCGUCCCCGUUCUC 17 7249
BCLllA-5688 + AUGCCCUGCAUGACGUC 17 7250
BCLllA-5689 + UACCAACCCGCGGGGUC 17 7251
BCLllA-5690 - GCCCCAUAU UAGUGGUC 17 7252
BCLllA-5691 + GGCAAAAGGCGAUUGUC 17 7253
BCLllA-5692 - CGGGU UGGUAUCCCUUC 17 7254
BCLllA-5693 - GUAUCGAGAGAGGCUUC 17 7255
BCLllA-5694 - GGGUGGACUACGGCUUC 17 7256
BCLllA-5695 + UCGCUGGUGCCGGGUUC 17 7257
BCLllA-5696 - CAGGCCCAGCUCAAAAG 17 7258
BCLllA-5697 + GUGAAGAACCUAGAAAG 17 7259
BCLllA-5698 + U UCUUAGCAGGU UAAAG 17 7260
BCLllA-3087 - CGAGGAAGAGGAAGAAG 17 7261
BCLllA-5699 + UGAUGCGCUUAGAGAAG 17 7262
BCLllA-3083 - GGAGGACGACGAGGAAG 17 7263
BCLllA-3089 - GGAAGAAGAGGAGGAAG 17 7264
BCLllA-3075 - CGGGGACGAGGAGGAAG 17 7265
BCLllA-2876 - CGCAGCGGCACGGGAAG 17 7266
BCLllA-5700 + GGUGGUGGACUAAACAG 17 7267
BCLllA-5701 + A A AG AG G U UGG AG ACAG 17 7268
BCLllA-5702 + GGCCGGCCUGGGGACAG 17 7269
BCLllA-5703 - AAAUUUGAAGCCCCCAG 17 7270
BCLllA-5704 - GGGAUCUCGGGGCGCAG 17 7271
BCLllA-5705 - AGAACGUGUACUCGCAG 17 7272
BCLllA-5706 + GGAGGGGCGGAUUGCAG 17 7273 BCLllA-5707 + CCAACCCGCGGGGUCAG 17 7274
BCLllA-5708 - AGGAUCAGUAUCGAGAG 17 7275
BCLllA-5709 - AGCUGACGGAGAGCGAG 17 7276
BCLllA-5710 + GGUUGGAGACAGAGGAG 17 7277
BCLllA-5711 + GGGCUGGGAGGGAGGAG 17 7278
BCLllA-5712 + GAUUGCAGAGGAGGGAG 17 7279
BCLllA-5713 + ACUAAACAGGGGGGGAG 17 7280
BCLllA-5714 + AUAUGAAUCCCAUGGAG 17 7281
BCLllA-5715 - AGCACGCCCCAUAUUAG 17 7282
BCLllA-5716 - CCUGAUCCCGGAGAACG 17 7283
BCLllA-3081 - GGAAGAGGAGGACGACG 17 7284
BCLllA-5717 + CGAGGAGUGCUCCGACG 17 7285
BCLllA-2837 - CCCGGAGAACGGGGACG 17 7286
BCLllA-5718 - GUGGCUCGCCGGCUACG 17 7287
BCLllA-5719 + UGACUUGGACUUGACCG 17 7288
BCLllA-5720 + GAAGGGAUACCAACCCG 17 7289
BCLllA-5721 - GAAGUCCCCUGACCCCG 17 7290
BCLllA-5722 + U UUGGACAGGCCCCCCG 17 7291
BCLllA-5723 - CUUCUCCACACCGCCCG 17 7292
BCLllA-5724 + CGAGGCCGACUCGCCCG 17 7293
BCLllA-2946 + CGCCCGGGGAGCAGCCG 17 7294
BCLllA-5725 - CCACCUGGCCGAGGCCG 17 7295
BCLllA-5726 + GUUGGGCAUCGCGGCCG 17 7296
BCLllA-5727 - GGCACUGUUAAUGGCCG 17 7297
BCLllA-5728 - GCGCGGCCACCUGGCCG 17 7298
BCLllA-5729 + CAAACUCCCGUUCUCCG 17 7299
BCLllA-5730 - CAGCGCGCUCAAGUCCG 17 7300
BCLllA-5731 + GCUGGUGCCGGGUUCCG 17 7301
BCLllA-5732 - GGCGAGAAGCAUAAGCG 17 7302
BCLllA-5733 - CAUGCAGCACU UCAGCG 17 7303
BCLllA-5734 + UGGCCUGGGUGCACGCG 17 7304
BCLllA-5735 + AGGGAUACCAACCCGCG 17 7305
BCLllA-5736 - CACGAGAACAGCUCGCG 17 7306
BCLllA-5737 + UGACGUCGGGCAGGGCG 17 7307
BCLllA-5738 - GAACAGCUCGCGGGGCG 17 7308
BCLllA-5739 - GGGCGCGGUCGUGGGCG 17 7309
BCLllA-5740 + CUCCGUGUUGGGCAUCG 17 7310
BCLllA-5741 - CGGGCGAGUCGGCCUCG 17 7311
BCLllA-5742 - ACCACGAGAACAGCUCG 17 7312
BCLllA-5743 - UGGACGGAGGGAUCUCG 17 7313
BCLllA-5744 + CCCGCGAGCUGUUCUCG 17 7314
BCLllA-5745 - CUCGCGGGGCGCGGUCG 17 7315 BCLllA-5746 + GUGGUGGACUAAACAGG 17 7316
BCLllA-5747 + CCUCGGCCUCGGCCAGG 17 7317
BCLllA-3090 - GGAAGAGGAAGAAGAGG 17 7318
BCLllA-3091 - AGAAGAGGAGGAAGAGG 17 7319
BCLllA-3088 - GGACGAGGAGGAAGAGG 17 7320
BCLllA-5748 + GAGGUUGGAGACAGAGG 17 7321
BCLllA-5749 + GGGGCGGAUUGCAGAGG 17 7322
BCLllA-5750 + UGAAUCCCAUGGAGAGG 17 7323
BCLllA-5751 + GGAGUGCUCCGACGAGG 17 7324
BCLllA-3066 - GGAGAACGGGGACGAGG 17 7325
BCLllA-3092 - AGAGGAGGAAGAGGAGG 17 7326
BCLllA-5752 + GU UGGAGACAGAGGAGG 17 7327
BCLllA-3093 - GGAGGAAGAGGAGGAGG 17 7328
BCLllA-5753 + AUUGCAGAGGAGGGAGG 17 7329
BCLllA-5754 + GGGGGCUGGGAGGGAGG 17 7330
BCLllA-5755 - CGGGCUGAGCCUGGAGG 17 7331
BCLllA-5756 - CCCGGGGAGCUGGACGG 17 7332
BCLllA-5757 + GACUUGGACUUGACCGG 17 7333
BCLllA-5758 + U UGGGCAUCGCGGCCGG 17 7334
BCLllA-5759 + CGGCCUGGGGACAGCGG 17 7335
BCLllA-5760 + UUCCGGGGAGCUGGCGG 17 7336
BCLllA-5761 + CCAGGCGCUCUAUGCGG 17 7337
BCLllA-5762 - UUGCGACGAAGACUCGG 17 7338
BCLllA-5763 - GGGCGAGUCGGCCUCGG 17 7339
BCLllA-5764 + UCCAAGUGAUGUCUCGG 17 7340
BCLllA-5765 + GGCGUCGCCAGGAAGGG 17 7341
BCLllA-5766 + UGGUGGACUAAACAGGG 17 7342
BCLllA-3076 - GACGGAGAGCGAGAGGG 17 7343
BCLllA-5767 + CGGAUUGCAGAGGAGGG 17 7344
BCLllA-5768 + UUGCAGAGGAGGGAGGG 17 7345
BCLllA-5769 + ACCGGGGGCUGGGAGGG 17 7346
BCLllA-5770 + CCGUCCAGCUCCCCGGG 17 7347
BCLllA-5771 + GAGAAAUCCAUGGCGGG 17 7348
BCLllA-5772 - GGCGAGUCGGCCUCGGG 17 7349
BCLllA-5773 + GGUGGACUAAACAGGGG 17 7350
BCLllA-5774 - UUUGAAGCCCCCAGGGG 17 7351
BCLllA-5775 + CUGGGAGGGAGGAGGGG 17 7352
BCLllA-5776 + UGCAGAGGAGGGAGGGG 17 7353
BCLllA-5777 - CAUAGAGCGCCUGGGGG 17 7354
BCLllA-5778 - AGCCCCCAGGGGUGGGG 17 7355
BCLllA-5779 + GGCACUCGGGUGAUGGG 17 7356
BCLllA-5780 + CUUGACCGGGGGCUGGG 17 7357 BCLllA-5781 + AACAGGGGGGGAGUGGG 17 7358
BCLllA-5782 + GGUACUACGCCGAAUGG 17 7359
BCLllA-5783 + CCUAGAGAAAUCCAUGG 17 7360
BCLllA-5784 + GGACUUGACCGUCAUGG 17 7361
BCLllA-5785 - AUUUCAGAGCAACCUGG 17 7362
BCLllA-5786 + UCUCGCCCAGGACCUGG 17 7363
BCLllA-5787 - CUUCGGGCUGAGCCUGG 17 7364
BCLllA-5788 - CCGCAUAGAGCGCCUGG 17 7365
BCLllA-5789 + AUCUUUGAGCUGCCUGG 17 7366
BCLllA-5790 + GGGUUCCGGGGAGCUGG 17 7367
BCLllA-5791 - AGCGGCACGGGAAGUGG 17 7368
BCLllA-5792 - CGCGCUCAAGUCCGUGG 17 7369
BCLllA-5793 + GCGAGCUGUUCUCGUGG 17 7370
BCLllA-5794 + GGCGCUCUAUGCGGUGG 17 7371
BCLllA-5795 + AAGUGAUGUCUCGGUGG 17 7372
BCLllA-5796 - CGGCACCAGCGACU UGG 17 7373
BCLllA-5797 + GGGUACUACGCCGAAUG 17 7374
BCLllA-5798 + CGGACUUGACCGUCAUG 17 7375
BCLllA-5799 + GCAUGUGCGUCUUCAUG 17 7376
BCLllA-5800 + CCCGGACCACUAAUAUG 17 7377
BCLllA-5801 + CCCCCAGGCGCUCUAUG 17 7378
BCLllA-5802 + CAGUGCCAUCGUCUAUG 17 7379
BCLllA-5803 - GACACUUGUGAGUACUG 17 7380
BCLllA-5804 + CGUCGCAAGUGUCCCUG 17 7381
BCLllA-5805 - ACCGCAUAGAGCGCCUG 17 7382
BCLllA-5806 + AGGGCUGGGCCGGCCUG 17 7383
BCLllA-5807 + AGGGGCUCAGCGAGCUG 17 7384
BCLllA-5808 - CCUUUGACAGGGUGCUG 17 7385
BCLllA-5809 - AAGUCAUGCGAGUUCUG 17 7386
BCLllA-5810 + AGGGCUUCUCGCCCGUG 17 7387
BCLllA-5811 + CAGCUCCCCGGGCGGUG 17 7388
BCLllA-5812 + AGGCGCUCUAUGCGGUG 17 7389
BCLllA-5813 - UGAAGCCCCCAGGGGUG 17 7390
BCLllA-5814 - AGAGAGCUCAAGAUGUG 17 7391
BCLllA-5815 + UCUCCGGGAUCAGGUUG 17 7392
BCLllA-5816 + UGGGUACUACGCCGAAU 17 7393
BCLllA-5817 + GGAGGCUCCAUAGCCAU 17 7394
BCLllA-5818 - CCCAGCCACCUCUCCAU 17 7395
BCLllA-5819 + UGCAGUAACCUUUGCAU 17 7396
BCLllA-5820 + UCGGACUUGACCGUCAU 17 7397
BCLllA-5821 + AAAGGCACUCGGGUGAU 17 7398
BCLllA-5822 + GCCCGGACCACUAAUAU 17 7399 BCLllA-5823 + GUUCUCGCUCUUGAACU 17 7400
BCLllA-5824 + ACCCUGUCAAAGGCACU 17 7401
BCLllA-5825 - ACCACCGAGACAUCACU 17 7402
BCLllA-5826 - CACUUGCGACGAAGACU 17 7403
BCLllA-5827 - ACCCGGCACCAGCGACU 17 7404
BCLllA-5828 - GGUAUCCCUUCAGGACU 17 7405
BCLllA-5829 + GCAGAACUCGCAUGACU 17 7406
BCLllA-5830 + AGUGUCCCUGUGGCCCU 17 7407
BCLllA-5831 - CACCGCAUAGAGCGCCU 17 7408
BCLllA-5832 + UAGGGCUGGGCCGGCCU 17 7409
BCLllA-5833 + CCUGUGGCCCUCGGCCU 17 7410
BCLllA-5834 - CCCGGGCGAGUCGGCCU 17 7411
BCLllA-5835 + CUUCAGCU UGCUGGCCU 17 7412
BCLllA-5836 - CUCGUCGGAGCACUCCU 17 7413
BCLllA-5837 - GCCUUCCACCAGGUCCU 17 7414
BCLllA-5838 + AAGGGGCUCAGCGAGCU 17 7415
BCLllA-5839 + CUGCCCUCUU UUGAGCU 17 7416
BCLllA-5840 + AACCUUUGCAUAGGGCU 17 7417
BCLllA-5841 + GGACUUGACCGGGGGCU 17 7418
BCLllA-5842 + CCCAUGGAGAGGUGGCU 17 7419
BCLllA-5434 + GUACAUGUGUAGCUGCU 17 7420
BCLllA-5843 - UCCAAAAAGCUGCUGCU 17 7421
BCLllA-5844 - GCUGGACGGAGGGAUCU 17 7422
BCLllA-5845 + CACAUCUUGAGCUCUCU 17 7423
BCLllA-5846 - CCGCCAUGGAUUUCUCU 17 7424
BCLllA-5847 + GGGUCCAAGUGAUGUCU 17 7425
BCLllA-5848 - GUCUCCAACCUCUUUCU 17 7426
BCLllA-5849 - CUCGGUGGCCGGCGAGU 17 7427
BCLllA-5850 - CUGCUCCCCGGGCGAGU 17 7428
BCLllA-5851 + CUAAACAGGGGGGGAGU 17 7429
BCLllA-5852 + CAUGCCCUGCAUGACGU 17 7430
BCLllA-5853 - GGCGCGGUCGUGGGCGU 17 7431
BCLllA-5854 - GCCUUU UGCCUCCUCGU 17 7432
BCLllA-5855 + GGUGGAGAGACCGUCGU 17 7433
BCLllA-5856 - UCGCGGGGCGCGGUCGU 17 7434
BCLllA-5857 + GU UCUCCGGGAUCAGGU 17 7435
BCLllA-5858 + AGAACCUAGAAAGAGGU 17 7436
BCLllA-5859 + GGCCUGGGGACAGCGGU 17 7437
BCLllA-5860 + CAGGCGCUCUAUGCGGU 17 7438
BCLllA-5861 - CCCCUGACCCCGCGGGU 17 7439
BCLllA-5862 - UUGAAGCCCCCAGGGGU 17 7440
BCLllA-5863 - GGCACCAGCGACUUGGU 17 7441 BCLllA-5864 - ACACUUGUGAGUACUGU 17 7442
BCLllA-5865 + GUACACGUUCUCCGUGU 17 7443
BCLllA-5866 + GCACAGGUUGCACUUGU 17 7444
BCLllA-5867 - CUUCACACACCCCCAU U 17 7445
BCLllA-5868 - GAUCCCUUCCUUAGCUU 17 7446
BCLllA-5869 - AGGGUGGACUACGGCUU 17 7447
BCLllA-5870 + U UCUCCGGGAUCAGGUU 17 7448
BCLllA-5871 + UACACGUUCUCCGUGUU 17 7449
BCLllA-5872 + GCCCAGCAGCAGCU UUU 17 7450
BCLllA-5873 - AGAUGUGUGGCAGUUU U 17 7451
BCLllA-5874 + UGCUCCGACGAGGAGGCAAA 20 7452
BCLllA-5875 + GGUAUUCUUAGCAGGU UAAA 20 7453
BCLllA-5876 - GGUGCUGCGGUUGAAUCCAA 20 7454
BCLllA-5877 - GCCGGCCCAGCCCUAUGCAA 20 7455
BCLllA-5878 + CAACCGCAGCACCCUGUCAA 20 7456
BCLllA-5879 - AGGCUUCCGGCCUGGCAGAA 20 7457
BCLllA-5880 + AGCUUGAUGCGCUUAGAGAA 20 7458
BCLllA-5881 - CCCAACCUGAUCCCGGAGAA 20 7459
BCLllA-5882 - UCGGAGCACUCCUCGGAGAA 20 7460
BCLllA-5883 + UCUCUGGGUACUACGCCGAA 20 7461
BCLllA-5884 + GAGUCUCCGAAGCUAAGGAA 20 7462
BCLllA-5885 + AGGGGGGGCGUCGCCAGGAA 20 7463
BCLllA-5886 + GGCU UGCUACCUGGCUGGAA 20 7464
BCLllA-5887 + AUUCUGCACCUAGUCCUGAA 20 7465
BCLllA-5888 + AGAAACCAUGCACUGGUGAA 20 7466
BCLllA-5889 + CAAAUUUUCUCAGAACUUAA 20 7467
BCLllA-5890 + UGGUAUUCUUAGCAGGUUAA 20 7468
BCLllA-5891 - AUAGACGAUGGCACUGUUAA 20 7469
BCLllA-5892 + UCUCGGUGGUGGACUAAACA 20 7470
BCLllA-5893 - CCCGGCCGCGAUGCCCAACA 20 7471
BCLllA-5894 - AUCUACUUAGAAAGCGAACA 20 7472
BCLllA-5895 - GGUGCACCGGCGCAGCCACA 20 7473
BCLllA-3377 - GGCCGAGGCCGAGGGCCACA 20 7474
BCLllA-5896 - UCACCCGAGUGCCU UUGACA 20 7475
BCLllA-5897 + GCUCUUGAACUUGGCCACCA 20 7476
BCLllA-5898 - GAGAAAAUUUGAAGCCCCCA 20 7477
BCLllA-5899 + UGUCUGCAAUAUGAAUCCCA 20 7478
BCLllA-5900 - GGCUAUGGAGCCUCCCGCCA 20 7479
BCLllA-5901 + ACUCGGGUGAUGGGUGGCCA 20 7480
BCLllA-5902 + AAGUCUCCUAGAGAAAUCCA 20 7481
BCLllA-5903 - CCUUCCCAGCCACCUCUCCA 20 7482
BCLllA-5904 - GAUCUCGGGGCGCAGCGGCA 20 7483 BCLllA-5905 - GCCCGACGUCAUGCAGGGCA 20 7484
BCLllA-5906 + GCCCUGCAUGACGUCGGGCA 20 7485
BCLllA-5907 - GGAGACUUAGAGAGCUGGCA 20 7486
BCLllA-5908 - GCCCUGCCCGACGUCAUGCA 20 7487
BCLllA-5909 + GGCCUCGCUGAAGUGCUGCA 20 7488
BCLllA-5910 - AACAGCCAUUCACCAGUGCA 20 7489
BCLllA-5911 - CAACACG CAC AG AAC AC U CA 20 7490
BCLllA-5912 + GUCGUCGGACUUGACCGUCA 20 7491
BCLllA-5913 + GAUACCAACCCGCGGGGUCA 20 7492
BCLllA-5914 - GGCAGGCCCAGCUCAAAAGA 20 7493
BCLllA-5915 - GAGGCUUCCGGCCUGGCAGA 20 7494
BCLllA-5916 - GCGCCUGGGGGCGGAAGAGA 20 7495
BCLllA-5917 + GAGCUUGAUGCGCUUAGAGA 20 7496
BCLllA-5918 - GGAGCUGACGGAGAGCGAGA 20 7497
BCLllA-5919 - UAAGCGCAUCAAGCUCGAGA 20 7498
BCLllA-5920 - GAGUCGGACCGCAUAGACGA 20 7499
BCLllA-5921 - AUGACGGUCAAGUCCGACGA 20 7500
BCLllA-5922 - GGCCACCUGGCCGAGGCCGA 20 7501
BCLllA-5923 + GGAGUCUCCGAAGCUAAGGA 20 7502
BCLllA-5924 + GAGGGGGGGCGUCGCCAGGA 20 7503
BCLllA-5925 + AAGAGGUUGGAGACAGAGGA 20 7504
BCLllA-5926 + GAGGGGCGGAUUGCAGAGGA 20 7505
BCLllA-5927 + CCGGGGGCUGGGAGGGAGGA 20 7506
BCLllA-5928 - CGCCCGGGGAGCUGGACGGA 20 7507
BCLllA-5929 - GAUGUGUGGCAGUU UUCGGA 20 7508
BCLllA-5930 + GGCGGAUUGCAGAGGAGGGA 20 7509
BCLllA-5931 + GACUUGACCGGGGGCUGGGA 20 7510
BCLllA-5932 + CCAUGGAGAGGUGGCUGGGA 20 7511
BCLllA-5933 - ACACCGCCCGGGGAGCUGGA 20 7512
BCLllA-5934 - GCAGCGGCACGGGAAGUGGA 20 7513
BCLllA-5935 + CUCGCCCAGGACCUGGUGGA 20 7514
BCLllA-5936 - GCACAAAUCGUCCCCCAUGA 20 7515
BCLllA-5937 + CAU UCUGCACCUAGUCCUGA 20 7516
BCLllA-5938 - AGAGGAGGAGGAGGAGCUGA 20 7517
BCLllA-5939 + UGUCAAAGGCACUCGGGUGA 20 7518
BCLllA-5940 + CCGGGCCCGGACCACUAAUA 20 7519
BCLllA-5941 + GU UGCAGUAACCUUUGCAUA 20 7520
BCLllA-5942 - GAGAGCGAGAGGGUGGACUA 20 7521
BCLllA-5943 + GUCUGGAGUCUCCGAAGCUA 20 7522
BCLllA-5944 - GCGGU UGAAUCCAAUGGCUA 20 7523
BCLllA-5945 + UCGCACAGGUUGCACUUGUA 20 7524
BCLllA-5946 + UCAAAUUUUCUCAGAACUUA 20 7525 BCLllA-5947 + GUCUCGGUGGUGGACUAAAC 20 7526
BCLllA-5948 - CCAACCUGAUCCCGGAGAAC 20 7527
BCLllA-5949 - CGGAGCACUCCUCGGAGAAC 20 7528
BCLllA-5950 - GUGCACCGGCGCAGCCACAC 20 7529
BCLllA-5951 - UGGCCGAGGCCGAGGGCCAC 20 7530
BCLllA-5952 + GGGUGCACGCGUGGUCGCAC 20 7531
BCLllA-5953 - AUCUCGGGGCGCAGCGGCAC 20 7532
BCLllA-5954 + UUGCAAGAGAAACCAUGCAC 20 7533
BCLllA-5955 - AGAGCAACCUGGUGGUGCAC 20 7534
BCLllA-5956 + CCAGCAGCAGCU UUUUGGAC 20 7535
BCLllA-5957 + UCGCAUGACU UGGACU UGAC 20 7536
BCLllA-5958 - AUCACCCGAGUGCCUUUGAC 20 7537
BCLllA-5959 - GUUCAAAUUUCAGAGCAACC 20 7538
BCLllA-5960 - ACCGCCAGCUCCCCGGAACC 20 7539
BCLllA-5961 + GGCUGCGCCGGUGCACCACC 20 7540
BCLllA-5962 - GAAGCAUAAGCGCGGCCACC 20 7541
BCLllA-5963 - CUUCAGCGAGGCCUUCCACC 20 7542
BCLllA-5964 + UAUGCUUCUCGCCCAGGACC 20 7543
BCLllA-5965 + CGCAUGACUUGGACUUGACC 20 7544
BCLllA-5966 - UUUAACCUGCUAAGAAUACC 20 7545
BCLllA-5967 + AGGAAGGGCGGCUUGCUACC 20 7546
BCLllA-5968 - GUGCGACCACGCGUGCACCC 20 7547
BCLllA-5969 - UGAGAAAAUUUGAAGCCCCC 20 7548
BCLllA-5970 + GGGCCAUCUCUUCCGCCCCC 20 7549
BCLllA-5971 - CCCUCCUCCCUCCCAGCCCC 20 7550
BCLllA-5972 - GAAGGAGUUCGACCUGCCCC 20 7551
BCLllA-5973 + AUCCCUCCGUCCAGCUCCCC 20 7552
BCLllA-5974 - AAUGGCCGCGGCUGCUCCCC 20 7553
BCLllA-5975 - UCUAGCCCACCGCUGUCCCC 20 7554
BCLllA-5976 - UGCGCUUCUCCACACCGCCC 20 7555
BCLllA-5977 + CCCCCGAGGCCGACUCGCCC 20 7556
BCLllA-5978 + CGCGCUUAUGCUUCUCGCCC 20 7557
BCLllA-5979 - CAUAUUAGUGGUCCGGGCCC 20 7558
BCLllA-5980 - GGGGGCGGAAGAGAUGGCCC 20 7559
BCLllA-5981 + CUU UUGAGCUGGGCCUGCCC 20 7560
BCLllA-5982 - UCUCUCCACCGCCAGCUCCC 20 7561
BCLllA-5983 + GAUCCCUCCGUCCAGCUCCC 20 7562
BCLllA-5984 - UAAUGGCCGCGGCUGCUCCC 20 7563
BCLllA-5985 - UUACUGCAACCAUUCCAGCC 20 7564
BCLllA-5986 - CUACGGCU UCGGGCUGAGCC 20 7565
BCLllA-5987 - UUGCGCUUCUCCACACCGCC 20 7566
BCLllA-5988 - CCCCCACCGCAUAGAGCGCC 20 7567 BCLllA-5989 + CCCCCCGAGGCCGACUCGCC 20 7568
BCLllA-5990 + GAGGGAGGGGGGGCGUCGCC 20 7569
BCLllA-5991 + UGCAUAGGGCUGGGCCGGCC 20 7570
BCLllA-5992 - AUCGAGAGAGGCUUCCGGCC 20 7571
BCLllA-5993 + CCGUGU UGGGCAUCGCGGCC 20 7572
BCLllA-5994 + UGUGGCCCUCGGCCUCGGCC 20 7573
BCLllA-5995 + GAGCUGGGCCUGCCCGGGCC 20 7574
BCLllA-5996 - CCAUAUUAGUGGUCCGGGCC 20 7575
BCLllA-5997 + GGCGCUUCAGCUUGCUGGCC 20 7576
BCLllA-5998 + CACUCGGGUGAUGGGUGGCC 20 7577
BCLllA-5999 + UCUUUUGAGCUGGGCCUGCC 20 7578
BCLllA-6000 + GAAGGGAUCUUUGAGCUGCC 20 7579
BCLllA-6001 + GUGGAAAGCGCCCUUCUGCC 20 7580
BCLllA-6002 + CCCACCAAGUCGCUGGUGCC 20 7581
BCLllA-6003 + GCCUCUCUCGAUACUGAUCC 20 7582
BCLllA-6004 - GAACGACCCCAACCUGAUCC 20 7583
BCLllA-6005 + CGUGGUGGCGCGCCGCCUCC 20 7584
BCLllA-6006 - UCGCCGGCUACGCGGCCUCC 20 7585
BCLllA-6007 + CCUCCUCGUCCCCGUUCUCC 20 7586
BCLllA-6008 - CGAGGCCUUCCACCAGGUCC 20 7587
BCLllA-6009 - ACGCCCCAUAUUAGUGGUCC 20 7588
BCLllA-6010 - AGGUAGCAAGCCGCCCUUCC 20 7589
BCLllA-6011 + AGUCGCUGGUGCCGGGUUCC 20 7590
BCLllA-6012 - CUCUAGGAGACU UAGAGAGC 20 7591
BCLllA-6013 + AGAGAAGGGGCUCAGCGAGC 20 7592
BCLllA-6014 - CUCCACACCGCCCGGGGAGC 20 7593
BCLllA-6015 + GGUGCCGGGUUCCGGGGAGC 20 7594
BCLllA-6016 + GCGUCUGCCCUCU UUUGAGC 20 7595
BCLllA-6017 + CUGCCUGGAGGCCGCGUAGC 20 7596
BCLllA-6018 + CUGAUCCUGGUAUUCUUAGC 20 7597
BCLllA-6019 + CUGAAGGGAUACCAACCCGC 20 7598
BCLllA-6020 - CGGAAGUCCCCUGACCCCGC 20 7599
BCLllA-6021 + UCUCGCCCGUGUGGCUGCGC 20 7600
BCLllA-6022 + GUCUAUGCGGUCCGACUCGC 20 7601
BCLllA-6023 - CCACCACGAGAACAGCUCGC 20 7602
BCLllA-6024 - GUGUACUCGCAGUGGCUCGC 20 7603
BCLllA-6025 + GGCGCUGCCCACCAAGUCGC 20 7604
BCLllA-6026 - GCCCACCGCUGUCCCCAGGC 20 7605
BCLllA-6027 + AAAGCGCCCUUCUGCCAGGC 20 7606
BCLllA-6028 + UCCGUGUUGGGCAUCGCGGC 20 7607
BCLllA-6029 + CAGUAACCUUUGCAUAGGGC 20 7608
BCLllA-6030 - UUAGUGGUCCGGGCCCGGGC 20 7609 BCLllA-6031 + UGCCCUGCAUGACGUCGGGC 20 7610
BCLllA-6032 + ACUUGGACUUGACCGGGGGC 20 7611
BCLllA-6033 + UGGGCAUCGCGGCCGGGGGC 20 7612
BCLllA-6034 + ACCUUUGCAUAGGGCUGGGC 20 7613
BCLllA-6035 + CUCCUAGAGAAAUCCAUGGC 20 7614
BCLllA-6036 + AGGGCGGCUUGCUACCUGGC 20 7615
BCLllA-6037 - AGGAGACUUAGAGAGCUGGC 20 7616
BCLllA-6038 + GAAUCCCAUGGAGAGGUGGC 20 7617
BCLllA-6039 - UGCGACGAAGACUCGGUGGC 20 7618
BCLllA-6040 - CGCCCUGCCCGACGUCAUGC 20 7619
BCLllA-5467 + AGUUGUACAUGUGUAGCUGC 20 7620
BCLllA-6041 + CACGGACUUGAGCGCGCUGC 20 7621
BCLllA-6042 - CCUGUCCAAAAAGCUGCUGC 20 7622
BCLllA-6043 + GCCCACCAAGUCGCUGGUGC 20 7623
BCLllA-6044 + CAUGUGGCGCUUCAGCU UGC 20 7624
BCLllA-6045 + CGUCCCCGUUCUCCGGGAUC 20 7625
BCLllA-6046 + GCACCCUGUCAAAGGCACUC 20 7626
BCLllA-6047 - UCCCCGGGCGAGUCGGCCUC 20 7627
BCLllA-6048 - GAGCUGGACGGAGGGAUCUC 20 7628
BCLllA-6049 + GCCACACAUCUUGAGCUCUC 20 7629
BCLllA-6050 + UCCUCCUCGUCCCCGUUCUC 20 7630
BCLllA-6051 + ACCAUGCCCUGCAUGACGUC 20 7631
BCLllA-6052 + GGAUACCAACCCGCGGGGUC 20 7632
BCLllA-6053 - CACGCCCCAUAU UAGUGGUC 20 7633
BCLllA-6054 + GGAGGCAAAAGGCGAU UGUC 20 7634
BCLllA-6055 - CCGCGGGUUGGUAUCCCUUC 20 7635
BCLllA-6056 - UCAGUAUCGAGAGAGGCUUC 20 7636
BCLllA-6057 - AGAGGGUGGACUACGGCUUC 20 7637
BCLllA-6058 + AAGUCGCUGGUGCCGGGUUC 20 7638
BCLllA-6059 - GGGCAGGCCCAGCUCAAAAG 20 7639
BCLllA-6060 + UGUGUGAAGAACCUAGAAAG 20 7640
BCLllA-6061 + GUAUUCUUAGCAGGUUAAAG 20 7641
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 7642
BCLllA-6062 + GCUUGAUGCGCUUAGAGAAG 20 7643
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 7644
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 7645
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 7646
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 7647
BCLllA-6063 + CUCGGUGGUGGACUAAACAG 20 7648
BCLllA-6064 + UAGAAAGAGGUUGGAGACAG 20 7649
BCLllA-6065 + CUGGGCCGGCCUGGGGACAG 20 7650
BCLllA-6066 - AGAAAAUUUGAAGCCCCCAG 20 7651 BCLllA-6067 - GGAGGGAUCUCGGGGCGCAG 20 7652
BCLllA-6068 - CGGAGAACGUGUACUCGCAG 20 7653
BCLllA-6069 + GGAGGAGGGGCGGAUUGCAG 20 7654
BCLllA-6070 + AUACCAACCCGCGGGGUCAG 20 7655
BCLllA-6071 - ACCAGGAUCAGUAUCGAGAG 20 7656
BCLllA-6072 - AGGAGCUGACGGAGAGCGAG 20 7657
BCLllA-6073 + AGAGGUUGGAGACAGAGGAG 20 7658
BCLllA-6074 + CGGGGGCUGGGAGGGAGGAG 20 7659
BCLllA-6075 + GCGGAUUGCAGAGGAGGGAG 20 7660
BCLllA-6076 + UGGACUAAACAGGGGGGGAG 20 7661
BCLllA-6077 + GCAAUAUGAAUCCCAUGGAG 20 7662
BCLllA-6078 - GGGAGCACGCCCCAUAU UAG 20 7663
BCLllA-6079 - CAACCUGAUCCCGGAGAACG 20 7664
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 7665
BCLllA-6080 + CUCCGAGGAGUGCUCCGACG 20 7666
BCLllA-6081 - GAUCCCGGAGAACGGGGACG 20 7667
BCLllA-6082 - GCAGUGGCUCGCCGGCUACG 20 7668
BCLllA-6083 + GCAUGACUUGGACUUGACCG 20 7669
BCLllA-6084 + CCUGAAGGGAUACCAACCCG 20 7670
BCLllA-6085 - ACGGAAGUCCCCUGACCCCG 20 7671
BCLllA-6086 + CUU UUUGGACAGGCCCCCCG 20 7672
BCLllA-6087 - GCGCUUCUCCACACCGCCCG 20 7673
BCLllA-6088 + CCCCGAGGCCGACUCGCCCG 20 7674
BCLllA-6089 + ACUCGCCCGGGGAGCAGCCG 20 7675
BCLllA-6090 - CGGCCACCUGGCCGAGGCCG 20 7676
BCLllA-6091 + CGUGUUGGGCAUCGCGGCCG 20 7677
BCLllA-6092 - GAUGGCACUGUUAAUGGCCG 20 7678
BCLllA-6093 - UAAGCGCGGCCACCUGGCCG 20 7679
BCLllA-6094 + GCGCAAACUCCCGUUCUCCG 20 7680
BCLllA-6095 - CAGCAGCGCGCUCAAGUCCG 20 7681
BCLllA-6096 + GUCGCUGGUGCCGGGUUCCG 20 7682
BCLllA-6097 - CUGGGCGAGAAGCAUAAGCG 20 7683
BCLllA-6098 - CUCCAUGCAGCACUUCAGCG 20 7684
BCLllA-6099 + UGCUGGCCUGGGUGCACGCG 20 7685
BCLllA-6100 + UGAAGGGAUACCAACCCGCG 20 7686
BCLllA-6101 - CACCACGAGAACAGCUCGCG 20 7687
BCLllA-6102 + GCAUGACGUCGGGCAGGGCG 20 7688
BCLllA-6103 - CGAGAACAGCUCGCGGGGCG 20 7689
BCLllA-6104 - GCGGGGCGCGGUCGUGGGCG 20 7690
BCLllA-6105 + GU UCUCCGUGUUGGGCAUCG 20 7691
BCLllA-6106 - CCCCGGGCGAGUCGGCCUCG 20 7692
BCLllA-6107 - GCCACCACGAGAACAGCUCG 20 7693 BCLllA-6108 - AGCUGGACGGAGGGAUCUCG 20 7694
BCLllA-6109 + CGCCCCGCGAGCUGUUCUCG 20 7695
BCLllA-6110 - CAGCUCGCGGGGCGCGGUCG 20 7696
BCLllA-6111 + UCGGUGGUGGACUAAACAGG 20 7697
BCLllA-6112 + GGCCCUCGGCCUCGGCCAGG 20 7698
BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 7699
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 7700
BCLllA-3445 - CGGGGACGAGGAGGAAGAGG 20 7701
BCLllA-6113 + AAAGAGGUUGGAGACAGAGG 20 7702
BCLllA-6114 + GGAGGGGCGGAUUGCAGAGG 20 7703
BCLllA-6115 + AUAUGAAUCCCAUGGAGAGG 20 7704
BCLllA-6116 + CGAGGAGUGCUCCGACGAGG 20 7705
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 7706
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 7707
BCLllA-6117 + GAGGUUGGAGACAGAGGAGG 20 7708
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 7709
BCLllA-6118 + CGGAUUGCAGAGGAGGGAGG 20 7710
BCLllA-6119 + ACCGGGGGCUGGGAGGGAGG 20 7711
BCLllA-6120 - CUUCGGGCUGAGCCUGGAGG 20 7712
BCLllA-6121 - CCGCCCGGGGAGCUGGACGG 20 7713
BCLllA-6122 + CAUGACUUGGACUUGACCGG 20 7714
BCLllA-6123 + GUGUUGGGCAUCGCGGCCGG 20 7715
BCLllA-6124 + GGCCGGCCUGGGGACAGCGG 20 7716
BCLllA-6125 + GGGUUCCGGGGAGCUGGCGG 20 7717
BCLllA-6126 + CCCCCAGGCGCUCUAUGCGG 20 7718
BCLllA-6127 - CACUUGCGACGAAGACUCGG 20 7719
BCLllA-6128 - CCCGGGCGAGUCGGCCUCGG 20 7720
BCLllA-6129 + GGGUCCAAGUGAUGUCUCGG 20 7721
BCLllA-6130 + GGGGGCGUCGCCAGGAAGGG 20 7722
BCLllA-6131 + CGGUGGUGGACUAAACAGGG 20 7723
BCLllA-6132 - GCUGACGGAGAGCGAGAGGG 20 7724
BCLllA-6133 + GGGCGGAUUGCAGAGGAGGG 20 7725
BCLllA-6134 + GGAUUGCAGAGGAGGGAGGG 20 7726
BCLllA-6135 + U UGACCGGGGGCUGGGAGGG 20 7727
BCLllA-6136 + CCUCCGUCCAGCUCCCCGGG 20 7728
BCLllA-6137 + CUAGAGAAAUCCAUGGCGGG 20 7729
BCLllA-6138 - CCGGGCGAGUCGGCCUCGGG 20 7730
BCLllA-6139 + GGUGGUGGACUAAACAGGGG 20 7731
BCLllA-6140 - AAAUUUGAAGCCCCCAGGGG 20 7732
BCLllA-6141 + GGGCUGGGAGGGAGGAGGGG 20 7733
BCLllA-6142 + GAUUGCAGAGGAGGGAGGGG 20 7734
BCLllA-6143 - CCGCAUAGAGCGCCUGGGGG 20 7735 BCLllA-6144 - UGAAGCCCCCAGGGGUGGGG 20 7736
BCLllA-6145 + AAAGGCACUCGGGUGAUGGG 20 7737
BCLllA-6146 + GGACUUGACCGGGGGCUGGG 20 7738
BCLllA-6147 + CUAAACAGGGGGGGAGUGGG 20 7739
BCLllA-6148 + CUGGGUACUACGCCGAAUGG 20 7740
BCLllA-6149 + UCUCCUAGAGAAAUCCAUGG 20 7741
BCLllA-6150 + GUCGGACUUGACCGUCAUGG 20 7742
BCLllA-6151 - CAAAUUUCAGAGCAACCUGG 20 7743
BCLllA-6152 + GCU UCUCGCCCAGGACCUGG 20 7744
BCLllA-6153 - CGGCUUCGGGCUGAGCCUGG 20 7745
BCLllA-6154 - CCACCGCAUAGAGCGCCUGG 20 7746
BCLllA-6155 + GGGAUCUUUGAGCUGCCUGG 20 7747
BCLllA-6156 + GCCGGGUUCCGGGGAGCUGG 20 7748
BCLllA-6157 - CGCAGCGGCACGGGAAGUGG 20 7749
BCLllA-6158 - CAGCGCGCUCAAGUCCGUGG 20 7750
BCLllA-6159 + CCCGCGAGCUGU UCUCGUGG 20 7751
BCLllA-6160 + CCAGGCGCUCUAUGCGGUGG 20 7752
BCLllA-6161 + UCCAAGUGAUGUCUCGGUGG 20 7753
BCLllA-6162 - ACCCGGCACCAGCGACU UGG 20 7754
BCLllA-6163 + UCUGGGUACUACGCCGAAUG 20 7755
BCLllA-6164 + CGUCGGACUUGACCGUCAUG 20 7756
BCLllA-6165 + UGUGCAUGUGCGUCUUCAUG 20 7757
BCLllA-6166 + GGGCCCGGACCACUAAUAUG 20 7758
BCLllA-6167 + CCGCCCCCAGGCGCUCUAUG 20 7759
BCLllA-6168 + UAACAGUGCCAUCGUCUAUG 20 7760
BCLllA-6169 - AGCGACACUUGUGAGUACUG 20 7761
BCLllA-6170 + CUUCGUCGCAAGUGUCCCUG 20 7762
BCLllA-6171 - CCCACCGCAUAGAGCGCCUG 20 7763
BCLllA-6172 + CAUAGGGCUGGGCCGGCCUG 20 7764
BCLllA-6173 + AGAAGGGGCUCAGCGAGCUG 20 7765
BCLllA-6174 - GUGCCUUUGACAGGGUGCUG 20 7766
BCLllA-6175 - UCCAAGUCAUGCGAGUUCUG 20 7767
BCLllA-6176 + UGUAGGGCUUCUCGCCCGUG 20 7768
BCLllA-6177 + GUCCAGCUCCCCGGGCGGUG 20 7769
BCLllA-6178 + CCCAGGCGCUCUAUGCGGUG 20 7770
BCLllA-6179 - AUUUGAAGCCCCCAGGGGUG 20 7771
BCLllA-6180 - CCCAGAGAGCUCAAGAUGUG 20 7772
BCLllA-6181 + CGU UCUCCGGGAUCAGGUUG 20 7773
BCLllA-6182 + CUCUGGGUACUACGCCGAAU 20 7774
BCLllA-6183 + GCGGGAGGCUCCAUAGCCAU 20 7775
BCLllA-6184 - CUUCCCAGCCACCUCUCCAU 20 7776
BCLllA-6185 + GGU UGCAGUAACCUUUGCAU 20 7777 BCLllA-6186 + UCGUCGGACUUGACCGUCAU 20 7778
BCLllA-6187 + GUCAAAGGCACUCGGGUGAU 20 7779
BCLllA-6188 + CGGGCCCGGACCACUAAUAU 20 7780
BCLllA-6189 + GUCGUUCUCGCUCUUGAACU 20 7781
BCLllA-6190 + AGCACCCUGUCAAAGGCACU 20 7782
BCLllA-6191 - UCCACCACCGAGACAUCACU 20 7783
BCLllA-6192 - GGACACUUGCGACGAAGACU 20 7784
BCLllA-6193 - GGAACCCGGCACCAGCGACU 20 7785
BCLllA-6194 - GU UGGUAUCCCUUCAGGACU 20 7786
BCLllA-6195 + GCCGCAGAACUCGCAUGACU 20 7787
BCLllA-6196 + GCAAGUGUCCCUGUGGCCCU 20 7788
BCLllA-6197 - CCCCACCGCAUAGAGCGCCU 20 7789
BCLllA-6198 + GCAUAGGGCUGGGCCGGCCU 20 7790
BCLllA-6199 + GUCCCUGUGGCCCUCGGCCU 20 7791
BCLllA-6200 - CUCCCCGGGCGAGUCGGCCU 20 7792
BCLllA-6201 + GCGCUUCAGCUUGCUGGCCU 20 7793
BCLllA-6202 - CUCCUCGUCGGAGCACUCCU 20 7794
BCLllA-6203 - GAGGCCU UCCACCAGGUCCU 20 7795
BCLllA-6204 + GAGAAGGGGCUCAGCGAGCU 20 7796
BCLllA-6205 + CGUCUGCCCUCUU UUGAGCU 20 7797
BCLllA-6206 + AGUAACCUUUGCAUAGGGCU 20 7798
BCLllA-6207 + CUUGGACUUGACCGGGGGCU 20 7799
BCLllA-6208 + AAUCCCAUGGAGAGGUGGCU 20 7800
BCLllA-5508 + GUUGUACAUGUGUAGCUGCU 20 7801
BCLllA-6209 - CUGUCCAAAAAGCUGCUGCU 20 7802
BCLllA-6210 - GGAGCUGGACGGAGGGAUCU 20 7803
BCLllA-6211 + CCACACAUCUUGAGCUCUCU 20 7804
BCLllA-6212 - CUCCCGCCAUGGAU UUCUCU 20 7805
BCLllA-6213 + UGGGGGUCCAAGUGAUGUCU 20 7806
BCLllA-6214 - UCUGUCUCCAACCUCUU UCU 20 7807
BCLllA-6215 - AGACUCGGUGGCCGGCGAGU 20 7808
BCLllA-6216 - CGGCUGCUCCCCGGGCGAGU 20 7809
BCLllA-6217 + GGACUAAACAGGGGGGGAGU 20 7810
BCLllA-6218 + CACCAUGCCCUGCAUGACGU 20 7811
BCLllA-6219 - CGGGGCGCGGUCGUGGGCGU 20 7812
BCLllA-6220 - AUCGCCUU UUGCCUCCUCGU 20 7813
BCLllA-6221 + GGCGGUGGAGAGACCGUCGU 20 7814
BCLllA-6222 - AGCUCGCGGGGCGCGGUCGU 20 7815
BCLllA-6223 + CCCGUUCUCCGGGAUCAGGU 20 7816
BCLllA-6224 + UGAAGAACCUAGAAAGAGGU 20 7817
BCLllA-6225 + GCCGGCCUGGGGACAGCGGU 20 7818
BCLllA-6226 + CCCCAGGCGCUCUAUGCGGU 20 7819 BCLllA-6227 - AGUCCCCUGACCCCGCGGGU 20 7820
BCLllA-6228 - AAUUUGAAGCCCCCAGGGGU 20 7821
BCLllA-6229 - CCCGGCACCAGCGACUUGGU 20 7822
BCLllA-6230 - GCGACACU UGUGAGUACUGU 20 7823
BCLllA-6231 + CGAGUACACGUUCUCCGUGU 20 7824
BCLllA-6232 + GUCGCACAGGUUGCACUUGU 20 7825
BCLllA-6233 - GU UCUUCACACACCCCCAUU 20 7826
BCLllA-6234 - AAAGAUCCCUUCCUUAGCUU 20 7827
BCLllA-6235 - GAGAGGGUGGACUACGGCUU 20 7828
BCLllA-6236 + CCGUUCUCCGGGAUCAGGUU 20 7829
BCLllA-6237 + GAGUACACGUUCUCCGUGUU 20 7830
BCLllA-6238 + GCUGCCCAGCAGCAGCU UUU 20 7831
BCLllA-6239 - UCAAGAUGUGUGGCAGUUUU 20 7832
Table 15D provides targeting domains for knocking out the BCL11A gene by dual targeting (e.g., dual single strand cleavages). In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B, or include a targeting domain from Group C and a second targeting domain from
Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. Exemplary gRNA pairs to be used with S. pyogenes Cas9 are shown in Table 15D, e.g., BCL11A-5355 or
BCL11A-5380 can be combined with BCL11A-5321 or BCL11A-5416; or BCL11A-5333, BCLl lA-5354, or BCLl lA-5329 can be combined with BCLl lA-5367 or BCLl lA-5341. Table 15D
Figure imgf000314_0001
Figure imgf000315_0001
Table 16A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an
embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16A
Figure imgf000315_0002
BCLllA-6266 + U UCCCGUUUGCU UAAGUGC 19 7859
BCLllA-5352 + AUUCCCGU UUGCUUAAGUGC 20 7860
BCLllA-6267 + AAUUCCCGUUUGCUUAAGUGC 21 7861
BCLllA-6268 + GAAUUCCCGUUUGCUUAAGUGC 22 7862
BCLllA-6269 + AGAAUUCCCGUU UGCUUAAGUGC 23 7863
BCLllA-6270 + GAGAAUUCCCGUUUGCUUAAGUGC 24 7864
BCLllA-6271 + U UUGUGCUCGAUAAAAAU 18 7865
BCLllA-6272 + GU UUGUGCUCGAUAAAAAU 19 7866
BCLllA-6273 + CGU UUGUGCUCGAUAAAAAU 20 7867
BCLllA-6274 + CCGUU UGUGCUCGAUAAAAAU 21 7868
BCLllA-6275 + UCCGU UUGUGCUCGAUAAAAAU 22 7869
BCLllA-6276 + UUCCGUUUGUGCUCGAUAAAAAU 23 7870
BCLllA-6277 + UUUCCGUUUGUGCUCGAUAAAAAU 24 7871
BCLllA-6278 + UGCACUCAUCCCAGGCGU 18 7872
BCLllA-6279 + CUGCACUCAUCCCAGGCGU 19 7873
BCLllA-5510 + UCUGCACUCAUCCCAGGCGU 20 7874
BCLllA-6280 + UUCUGCACUCAUCCCAGGCGU 21 7875
BCLllA-6281 + AUUCUGCACUCAUCCCAGGCGU 22 7876
BCLllA-6282 + UAUUCUGCACUCAUCCCAGGCGU 23 7877
BCLllA-6283 + AUAUUCUGCACUCAUCCCAGGCGU 24 7878
BCLllA-6284 + GUCUGGUUCAUCAUCUGU 18 7879
BCLllA-6285 + GGUCUGGUUCAUCAUCUGU 19 7880
BCLllA-6286 + UGGUCUGGUUCAUCAUCUGU 20 7881
BCLllA-6287 + GUGGUCUGGUUCAUCAUCUGU 21 7882
BCLllA-6288 + CGUGGUCUGGUUCAUCAUCUGU 22 7883
BCLllA-6289 + CCGUGGUCUGGUUCAUCAUCUGU 23 7884
BCLllA-6290 + GCCGUGGUCUGGUUCAUCAUCUGU 24 7885
BCLllA-6291 - CCGUUGGGAGCUCCAGAA 18 7886
BCLllA-6292 - CCCGUUGGGAGCUCCAGAA 19 7887
BCLllA-5447 - GCCCGUUGGGAGCUCCAGAA 20 7888
BCLllA-6293 - GGCCCGU UGGGAGCUCCAGAA 21 7889
BCLllA-6294 - CGGCCCGUUGGGAGCUCCAGAA 22 7890
BCLllA-6295 - ACGGCCCGUUGGGAGCUCCAGAA 23 7891
BCLllA-6296 - CACGGCCCGUUGGGAGCUCCAGAA 24 7892
BCLllA-6297 - GGCAUCCAGGUCACGCCA 18 7893
BCLllA-6298 - UGGCAUCCAGGUCACGCCA 19 7894
BCLllA-6299 - U UGGCAUCCAGGUCACGCCA 20 7895
BCLllA-6300 - GUUGGCAUCCAGGUCACGCCA 21 7896
BCLllA-6301 - GGUUGGCAUCCAGGUCACGCCA 22 7897
BCLllA-6302 - AGGUUGGCAUCCAGGUCACGCCA 23 7898
BCLllA-6303 - GAGGUUGGCAUCCAGGUCACGCCA 24 7899
BCLllA-6304 - AACCCCAGCACUUAAGCAAAC 21 7900 BCLllA-6305 - AAACCCCAGCACUUAAGCAAAC 22 7901
BCLllA-6306 - CAAACCCCAGCACUUAAGCAAAC 23 7902
BCLllA-6307 - G CAA ACCCCAG CAC U UAAG CAAAC 24 7903
BCLllA-6308 - AGCUCUAAUCCCCACGCC 18 7904
BCLllA-6309 - GAGCUCUAAUCCCCACGCC 19 7905
BCLllA-5350 - GGAGCUCUAAUCCCCACGCC 20 7906
BCLllA-6310 - UGGAGCUCUAAUCCCCACGCC 21 7907
BCLllA-6311 - AUGGAGCUCUAAUCCCCACGCC 22 7908
BCLllA-6312 - CAUGGAGCUCUAAUCCCCACGCC 23 7909
BCLllA-6313 - ACAUGGAGCUCUAAUCCCCACGCC 24 7910
BCLllA-6314 - UUUAUCAACGUCAUCUAG 18 7911
BCLllA-6315 - GUUUAUCAACGUCAUCUAG 19 7912
BCLllA-5356 - UGUUUAUCAACGUCAUCUAG 20 7913
BCLllA-6316 - UUGUUUAUCAACGUCAUCUAG 21 7914
BCLllA-6317 - AUUGUUUAUCAACGUCAUCUAG 22 7915
BCLllA-6318 - GAUUGUUUAUCAACGUCAUCUAG 23 7916
BCLllA-6319 - CGAUUGUUUAUCAACGUCAUCUAG 24 7917
BCLllA-6320 - AGUGCAGAAUAUGCCCCG 18 7918
BCLllA-6321 - GAGUGCAGAAUAUGCCCCG 19 7919
BCLllA-6322 - UGAGUGCAGAAUAUGCCCCG 20 7920
BCLllA-6323 - AUGAGUGCAGAAUAUGCCCCG 21 7921
BCLllA-6324 - GAUGAGUGCAGAAUAUGCCCCG 22 7922
BCLllA-6325 - GGAUGAGUGCAGAAUAUGCCCCG 23 7923
BCLllA-6326 - GGGAUGAGUGCAGAAUAUGCCCCG 24 7924
BCLllA-6327 - CUAAUCCCCACGCCUGGG 18 7925
BCLllA-6328 - UCUAAUCCCCACGCCUGGG 19 7926
BCLllA-6329 - CUCUAAUCCCCACGCCUGGG 20 7927
BCLllA-6330 - GCUCUAAUCCCCACGCCUGGG 21 7928
BCLllA-6331 - AGCUCUAAUCCCCACGCCUGGG 22 7929
BCLllA-6332 - GAGCUCUAAUCCCCACGCCUGGG 23 7930
BCLllA-6333 - GGAGCUCUAAUCCCCACGCCUGGG 24 7931
BCLllA-6334 - CCACGCCUGGGAUGAGUG 18 7932
BCLllA-6335 - CCCACGCCUGGGAUGAGUG 19 7933
BCLllA-6336 - CCCCACGCCUGGGAUGAGUG 20 7934
BCLllA-6337 - UCCCCACGCCUGGGAUGAGUG 21 7935
BCLllA-6338 - AUCCCCACGCCUGGGAUGAGUG 22 7936
BCLllA-6339 - AAUCCCCACGCCUGGGAUGAGUG 23 7937
BCLllA-6340 - UAAUCCCCACGCCUGGGAUGAGUG 24 7938
BCLllA-6341 - CUCUGCUUAGAAAAAGCU 18 7939
BCLllA-6342 - CCUCUGCUUAGAAAAAGCU 19 7940
BCLllA-6343 - GCCUCUGCUUAGAAAAAGCU 20 7941
BCLllA-6344 - AGCCUCUGCUUAGAAAAAGCU 21 7942 BCLllA-6345 - CAGCCUCUGCUUAGAAAAAGCU 22 7943
BCLllA-6346 - GCAGCCUCUGCUUAGAAAAAGCU 23 7944
BCLllA-6347 - GGCAGCCUCUGCU UAGAAAAAGCU 24 7945
Table 16B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16B
Figure imgf000318_0001
Table 16C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16C
Figure imgf000318_0002
BCLllA-6354 + AAAAAUAAGAAUGUCCCCCAA 21 7955
BCLllA-6355 + UAAAAAUAAGAAUGUCCCCCAA 22 7956
BCLllA-6356 + AUAAAAAUAAGAAUGUCCCCCAA 23 7957
BCLllA-6357 + GAUAAAAAUAAGAAUGUCCCCCAA 24 7958
BCLllA-6358 + U UCAUCUCGAUUGGUGAA 18 7959
BCLllA-6359 + U UUCAUCUCGAUUGGUGAA 19 7960
BCLllA-5344 + U UUUCAUCUCGAUUGGUGAA 20 7961
BCLllA-6360 + U UUUUCAUCUCGAUUGGUGAA 21 7962
BCLllA-6361 + U UUUUUCAUCUCGAUUGGUGAA 22 7963
BCLllA-6362 + CUU UUUUCAUCUCGAUUGGUGAA 23 7964
BCLllA-6363 + GCUUUUUUCAUCUCGAUUGGUGAA 24 7965
BCLllA-6364 + AAAUAAGAAUGUCCCCCA 18 7966
BCLllA-6365 + AAAAUAAGAAUGUCCCCCA 19 7967
BCLllA-6366 + AAAAAUAAGAAUGUCCCCCA 20 7968
BCLllA-6367 + UAAAAAUAAGAAUGUCCCCCA 21 7969
BCLllA-6368 + AUAAAAAUAAGAAUGUCCCCCA 22 7970
BCLllA-6369 + GAUAAAAAUAAGAAUGUCCCCCA 23 7971
BCLllA-6370 + CGAUAAAAAUAAGAAUGUCCCCCA 24 7972
BCLllA-6371 + CCCCUUCUGGAGCUCCCA 18 7973
BCLllA-6372 + UCCCCUUCUGGAGCUCCCA 19 7974
BCLllA-6373 + AUCCCCU UCUGGAGCUCCCA 20 7975
BCLllA-6374 + GAUCCCCUUCUGGAGCUCCCA 21 7976
BCLllA-6375 + UGAUCCCCUUCUGGAGCUCCCA 22 7977
BCLllA-6376 + AUGAUCCCCUUCUGGAGCUCCCA 23 7978
BCLllA-6377 + CAUGAUCCCCUUCUGGAGCUCCCA 24 7979
BCLllA-6378 + UAGAGCUCCAUGUGCAGA 18 7980
BCLllA-6379 + UUAGAGCUCCAUGUGCAGA 19 7981
BCLllA-6380 + AUUAGAGCUCCAUGUGCAGA 20 7982
BCLllA-6381 + GAUUAGAGCUCCAUGUGCAGA 21 7983
BCLllA-6382 + GGAUUAGAGCUCCAUGUGCAGA 22 7984
BCLllA-6383 + GGGAUUAGAGCUCCAUGUGCAGA 23 7985
BCLllA-6384 + GGGGAUUAGAGCUCCAUGUGCAGA 24 7986
BCLllA-6385 + GCUCCAUGUGCAGAACGA 18 7987
BCLllA-6386 + AGCUCCAUGUGCAGAACGA 19 7988
BCLllA-5347 + GAGCUCCAUGUGCAGAACGA 20 7989
BCLllA-6387 + AGAGCUCCAUGUGCAGAACGA 21 7990
BCLllA-6388 + UAGAGCUCCAUGUGCAGAACGA 22 7991
BCLllA-6389 + UUAGAGCUCCAUGUGCAGAACGA 23 7992
BCLllA-6390 + AUUAGAGCUCCAUGUGCAGAACGA 24 7993
BCLllA-6391 + UUUCAUCUCGAUUGGUGA 18 7994
BCLllA-6392 + UUUUCAUCUCGAUUGGUGA 19 7995
BCLllA-5456 + UUUUUCAUCUCGAUUGGUGA 20 7996 BCLllA-6393 + UUUUUUCAUCUCGAUUGGUGA 21 7997
BCLllA-6394 + CUUUUUUCAUCUCGAU UGGUGA 22 7998
BCLllA-6395 + GCU UUUUUCAUCUCGAUUGGUGA 23 7999
BCLllA-6396 + UGCUUUUUUCAUCUCGAUUGGUGA 24
8000
BCLllA-6397 + GCAGAAGUUUAUCUGUGA 18 8001
BCLllA-6398 + UGCAGAAGUUUAUCUGUGA 19 8002
BCLllA-6399 + GUGCAGAAGUUUAUCUGUGA 20 8003
BCLllA-6400 + AGUGCAGAAGUUUAUCUGUGA 21 8004
BCLllA-6401 + CAGUGCAGAAGUUUAUCUGUGA 22 8005
BCLllA-6402 + CCAGUGCAGAAGUUUAUCUGUGA 23 8006
BCLllA-6403 + UCCAGUGCAGAAGUU UAUCUGUGA 24 8007
BCLllA-6404 + GAGCUCCAUGUGCAGAAC 18 8008
BCLllA-6405 + AGAGCUCCAUGUGCAGAAC 19 8009
BCLllA-6406 + UAGAGCUCCAUGUGCAGAAC 20 8010
BCLllA-6407 + UUAGAGCUCCAUGUGCAGAAC 21 8011
BCLllA-6408 + AUUAGAGCUCCAUGUGCAGAAC 22 8012
BCLllA-6409 + GAUUAGAGCUCCAUGUGCAGAAC 23 8013
BCLllA-6410 + GGAUUAGAGCUCCAUGUGCAGAAC 24 8014
BCLllA-6411 + UAUUAUUGGGUUACUUAC 18 8015
BCLllA-6412 + CUAUUAUUGGGUUACU UAC 19 8016
BCLllA-6413 + ACUAUUAUUGGGUUACUUAC 20 8017
BCLllA-6414 + UACUAUUAUUGGGUUACUUAC 21 8018
BCLllA-6415 + U UACUAUUAUUGGGUUACUUAC 22 8019
BCLllA-6416 + AUUACUAUUAUUGGGU UACUUAC 23 8020
BCLllA-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 8021
BCLllA-6418 + ACCUGGAUGCCAACCUCC 18 8022
BCLllA-6419 + GACCUGGAUGCCAACCUCC 19 8023
BCLllA-6420 + UGACCUGGAUGCCAACCUCC 20 8024
BCLllA-6421 + GUGACCUGGAUGCCAACCUCC 21 8025
BCLllA-6422 + CGUGACCUGGAUGCCAACCUCC 22 8026
BCLllA-6423 + GCGUGACCUGGAUGCCAACCUCC 23 8027
BCLllA-6424 + GGCGUGACCUGGAUGCCAACCUCC 24 8028
BCLllA-6425 + UCUGCACUCAUCCCAGGC 18 8029
BCLllA-6426 + UUCUGCACUCAUCCCAGGC 19 8030
BCLllA-6427 + AUUCUGCACUCAUCCCAGGC 20 8031
BCLllA-6428 + UAUUCUGCACUCAUCCCAGGC 21 8032
BCLllA-6429 + AUAUUCUGCACUCAUCCCAGGC 22 8033
BCLllA-6430 + CAUAUUCUGCACUCAUCCCAGGC 23 8034
BCLllA-6431 + GCAUAUUCUGCACUCAUCCCAGGC 24 8035
BCLllA-6432 + GAGGUCAUGAUCCCCUUC 18 8036
BCLllA-6433 + GGAGGUCAUGAUCCCCU UC 19 8037 BCLllA-5471 + AGGAGGUCAUGAUCCCCUUC 20 8038
BCLllA-6434 + GAGGAGGUCAUGAUCCCCUUC 21 8039
BCLllA-6435 + UGAGGAGGUCAUGAUCCCCUUC 22 8040
BCLllA-6436 + GUGAGGAGGUCAUGAUCCCCUUC 23 8041
BCLllA-6437 + GGUGAGGAGGUCAUGAUCCCCUUC 24 8042
BCLllA-6438 + AUCUGUAAGAAUGGCU UC 18 8043
BCLllA-6439 + CAUCUGUAAGAAUGGCUUC 19 8044
BCLllA-6440 + UCAUCUGUAAGAAUGGCUUC 20 8045
BCLllA-6441 + AUCAUCUGUAAGAAUGGCUUC 21 8046
BCLllA-6442 + CAUCAUCUGUAAGAAUGGCUUC 22 8047
BCLllA-6443 + UCAUCAUCUGUAAGAAUGGCUUC 23 8048
BCLllA-6444 + UUCAUCAUCUGUAAGAAUGGCUUC 24 8049
BCLllA-6445 + UCAUCUCGAUUGGUGAAG 18 8050
BCLllA-6446 + U UCAUCUCGAUUGGUGAAG 19 8051
BCLllA-5355 + U UUCAUCUCGAUUGGUGAAG 20 8052
BCLllA-6447 + U UUUCAUCUCGAUUGGUGAAG 21 8053
BCLllA-6448 + U UUUUCAUCUCGAUUGGUGAAG 22 8054
BCLllA-6449 + U UUUUUCAUCUCGAUUGGUGAAG 23 8055
BCLllA-6450 + CUU UUUUCAUCUCGAUUGGUGAAG 24 8056
BCLllA-6451 + UCCACAGCU UUUUCUAAG 18 8057
BCLllA-6452 + AUCCACAGCUUUUUCUAAG 19 8058
BCLllA-6453 + UAUCCACAGCU UUUUCUAAG 20 8059
BCLllA-6454 + U UAUCCACAGCUUUUUCUAAG 21 8060
BCLllA-6455 + CUUAUCCACAGCUUUU UCUAAG 22 8061
BCLllA-6456 + GCU UAUCCACAGCUUUU UCUAAG 23 8062
BCLllA-6457 + GGCU UAUCCACAGCUUUUUCUAAG 24 8063
BCLllA-6458 + AUCUGGCACUGCCCACAG 18 8064
BCLllA-6459 + CAUCUGGCACUGCCCACAG 19 8065
BCLllA-6460 + UCAUCUGGCACUGCCCACAG 20 8066
BCLllA-6461 + UUCAUCUGGCACUGCCCACAG 21 8067
BCLllA-6462 + GU UCAUCUGGCACUGCCCACAG 22 8068
BCLllA-6463 + AGUUCAUCUGGCACUGCCCACAG 23 8069
BCLllA-6464 + AAGUUCAUCUGGCACUGCCCACAG 24 8070
BCLllA-6465 + CUCCAUGUGCAGAACGAG 18 8071
BCLllA-6466 + GCUCCAUGUGCAGAACGAG 19 8072
BCLllA-5476 + AGCUCCAUGUGCAGAACGAG 20 8073
BCLllA-6467 + GAGCUCCAUGUGCAGAACGAG 21 8074
BCLllA-6468 + AGAGCUCCAUGUGCAGAACGAG 22 8075
BCLllA-6469 + UAGAGCUCCAUGUGCAGAACGAG 23 8076
BCLllA-6470 + UUAGAGCUCCAUGUGCAGAACGAG 24 8077
BCLllA-6471 + UGUGCAGAACGAGGGGAG 18 8078
BCLllA-6472 + AUGUGCAGAACGAGGGGAG 19 8079 BCLllA-6473 + CAUGUGCAGAACGAGGGGAG 20 8080
BCLllA-6474 + CCAUGUGCAGAACGAGGGGAG 21 8081
BCLllA-6475 + UCCAUGUGCAGAACGAGGGGAG 22 8082
BCLllA-6476 + CUCCAUGUGCAGAACGAGGGGAG 23 8083
BCLllA-6477 + GCUCCAUGUGCAGAACGAGGGGAG 24 8084
BCLllA-6478 + AGCUCCAUGUGCAGAACG 18 8085
BCLllA-6479 + GAGCUCCAUGUGCAGAACG 19 8086
BCLllA-5357 + AGAGCUCCAUGUGCAGAACG 20 8087
BCLllA-6480 + UAGAGCUCCAUGUGCAGAACG 21 8088
BCLllA-6481 + U UAGAGCUCCAUGUGCAGAACG 22 8089
BCLllA-6482 + AUUAGAGCUCCAUGUGCAGAACG 23 8090
BCLllA-6483 + GAUUAGAGCUCCAUGUGCAGAACG 24 8091
BCLllA-6484 + CUGCACUCAUCCCAGGCG 18 8092
BCLllA-6485 + UCUGCACUCAUCCCAGGCG 19 8093
BCLllA-5480 + UUCUGCACUCAUCCCAGGCG 20 8094
BCLllA-6486 + AUUCUGCACUCAUCCCAGGCG 21 8095
BCLllA-6487 + UAUUCUGCACUCAUCCCAGGCG 22 8096
BCLllA-6488 + AUAUUCUGCACUCAUCCCAGGCG 23 8097
BCLllA-6489 + CAUAUUCUGCACUCAUCCCAGGCG 24 8098
BCLllA-6490 + GGGUUUGCCUUGCU UGCG 18 8099
BCLllA-6491 + GGGGUUUGCCUUGCUUGCG 19 8100
BCLllA-6492 + UGGGGUUUGCCUUGCU UGCG 20 8101
BCLllA-6493 + CUGGGGUUUGCCUUGCUUGCG 21 8102
BCLllA-6494 + GCUGGGGUUUGCCUUGCUUGCG 22 8103
BCLllA-6495 + UGCUGGGGUUUGCCUUGCUUGCG 23 8104
BCLllA-6496 + GUGCUGGGGUUUGCCU UGCUUGCG 24 8105
BCLllA-6497 + CCAUGUGCAGAACGAGGG 18 8106
BCLllA-6498 + UCCAUGUGCAGAACGAGGG 19 8107
BCLllA-6499 + CUCCAUGUGCAGAACGAGGG 20 8108
BCLllA-6500 + GCUCCAUGUGCAGAACGAGGG 21 8109
BCLllA-6501 + AGCUCCAUGUGCAGAACGAGGG 22 8110
BCLllA-6502 + GAGCUCCAUGUGCAGAACGAGGG 23 8111
BCLllA-6503 + AGAGCUCCAUGUGCAGAACGAGGG 24 8112
BCLllA-6504 + GACAUGGUGGGCUGCGGG 18 8113
BCLllA-6505 + AGACAUGGUGGGCUGCGGG 19 8114
BCLllA-6506 + GAGACAUGGUGGGCUGCGGG 20 8115
BCLllA-6507 + CGAGACAUGGUGGGCUGCGGG 21 8116
BCLllA-6508 + GCGAGACAUGGUGGGCUGCGGG 22 8117
BCLllA-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 8118
BCLllA-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 8119
BCLllA-6511 + CAUGUGCAGAACGAGGGG 18 8120
BCLllA-6512 + CCAUGUGCAGAACGAGGGG 19 8121 BCLllA-5488 + UCCAUGUGCAGAACGAGGGG 20 8122
BCLllA-6513 + CUCCAUGUGCAGAACGAGGGG 21 8123
BCLllA-6514 + GCUCCAUGUGCAGAACGAGGGG 22 8124
BCLllA-6515 + AGCUCCAUGUGCAGAACGAGGGG 23 8125
BCLllA-6516 + GAGCUCCAUGUGCAGAACGAGGGG 24 8126
BCLllA-6517 + CAAGAGGCUCGGCUGUGG 18 8127
BCLllA-6518 + UCAAGAGGCUCGGCUGUGG 19 8128
BCLllA-6519 + U UCAAGAGGCUCGGCUGUGG 20 8129
BCLllA-6520 + CUUCAAGAGGCUCGGCUGUGG 21 8130
BCLllA-6521 + GCU UCAAGAGGCUCGGCUGUGG 22 8131
BCLllA-6522 + GGCUUCAAGAGGCUCGGCUGUGG 23 8132
BCLllA-6523 + UGGCUUCAAGAGGCUCGGCUGUGG 24 8133
BCLllA-6524 + UGCUUGCGGCGAGACAUG 18 8134
BCLllA-6525 + U UGCUUGCGGCGAGACAUG 19 8135
BCLllA-6526 + CUUGCUUGCGGCGAGACAUG 20 8136
BCLllA-6527 + CCUUGCUUGCGGCGAGACAUG 21 8137
BCLllA-6528 + GCCUUGCUUGCGGCGAGACAUG 22 8138
BCLllA-6529 + UGCCU UGCUUGCGGCGAGACAUG 23 8139
BCLllA-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 8140
BCLllA-6531 + CAACUUACAAAUACCCUG 18 8141
BCLllA-6532 + UCAACUUACAAAUACCCUG 19 8142
BCLllA-5494 + CUCAACUUACAAAUACCCUG 20 8143
BCLllA-6533 + GCUCAACUUACAAAUACCCUG 21 8144
BCLllA-6534 + GGCUCAACUUACAAAUACCCUG 22 8145
BCLllA-6535 + AGGCUCAACUUACAAAUACCCUG 23 8146
BCLllA-6536 + AAGGCUCAACUUACAAAUACCCUG 24 8147
BCLllA-6537 + GUUGUACAUGUGUAGCUG 18 8148
BCLllA-6538 + AGUUGUACAUGUGUAGCUG 19 8149
BCLllA-6539 + AAGUUGUACAUGUGUAGCUG 20 8150
BCLllA-6540 + CAAGUUGUACAUGUGUAGCUG 21 8151
BCLllA-6541 + GCAAGUUGUACAUGUGUAGCUG 22 8152
BCLllA-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 8153
BCLllA-6543 + U UGCAAGUUGUACAUGUGUAGCUG 24 8154
BCLllA-6544 + GCGAGACAUGGUGGGCUG 18 8155
BCLllA-6545 + GGCGAGACAUGGUGGGCUG 19 8156
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 8157
BCLllA-6546 + GCGGCGAGACAUGGUGGGCUG 21 8158
BCLllA-6547 + UGCGGCGAGACAUGGUGGGCUG 22 8159
BCLllA-6548 + UUGCGGCGAGACAUGGUGGGCUG 23 8160
BCLllA-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 8161
BCLllA-6550 + UUCCCGU UUGCUUAAGUG 18 8162
BCLllA-6551 + AUUCCCGUUUGCU UAAGUG 19 8163 BCLllA-6552 + AAUUCCCGUU UGCUUAAGUG 20 8164
BCLllA-6553 + GAAUUCCCGU UUGCUUAAGUG 21 8165
BCLllA-6554 + AGAAUUCCCGUUUGCU UAAGUG 22 8166
BCLllA-6555 + GAGAAUUCCCGU UUGCUUAAGUG 23 8167
BCLllA-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 8168
BCLllA-6557 + GGAGAGGCCCCUCCAGUG 18 8169
BCLllA-6558 + AGGAGAGGCCCCUCCAGUG 19 8170
BCLllA-6559 + GAGGAGAGGCCCCUCCAGUG 20 8171
BCLllA-6560 + GGAGGAGAGGCCCCUCCAGUG 21 8172
BCLllA-6561 + GGGAGGAGAGGCCCCUCCAGUG 22 8173
BCLllA-6562 + GGGGAGGAGAGGCCCCUCCAGUG 23 8174
BCLllA-6563 + AGGGGAGGAGAGGCCCCUCCAGUG 24 8175
BCLllA-6564 + UGGCACUGCCCACAGGUG 18 8176
BCLllA-6565 + CUGGCACUGCCCACAGGUG 19 8177
BCLllA-5498 + UCUGGCACUGCCCACAGGUG 20 8178
BCLllA-6566 + AUCUGGCACUGCCCACAGGUG 21 8179
BCLllA-6567 + CAUCUGGCACUGCCCACAGGUG 22 8180
BCLllA-6568 + UCAUCUGGCACUGCCCACAGGUG 23 8181
BCLllA-6569 + U UCAUCUGGCACUGCCCACAGGUG 24 8182
BCLllA-6570 + U UUUCAUCUCGAUUGGUG 18 8183
BCLllA-6571 + U UUUUCAUCUCGAUUGGUG 19 8184
BCLllA-6572 + U UUUUUCAUCUCGAUUGGUG 20 8185
BCLllA-6573 + CUUUUUUCAUCUCGAU UGGUG 21 8186
BCLllA-6574 + GCUUUUUUCAUCUCGAUUGGUG 22 8187
BCLllA-6575 + UGCUUUUU UCAUCUCGAUUGGUG 23 8188
BCLllA-6576 + AUGCUUUUUUCAUCUCGAUUGGUG 24 8189
BCLllA-6577 + GGAUUAGAGCUCCAUGUG 18 8190
BCLllA-6578 + GGGAUUAGAGCUCCAUGUG 19 8191
BCLllA-6579 + GGGGAUUAGAGCUCCAUGUG 20 8192
BCLllA-6580 + UGGGGAUUAGAGCUCCAUGUG 21 8193
BCLllA-6581 + GUGGGGAUUAGAGCUCCAUGUG 22 8194
BCLllA-6582 + CGUGGGGAUUAGAGCUCCAUGUG 23 8195
BCLllA-6583 + GCGUGGGGAUUAGAGCUCCAUGUG 24 8196
BCLllA-6584 + CUUUUUUCAUCUCGAU UG 18 8197
BCLllA-6585 + GCU UUUUUCAUCUCGAUUG 19 8198
BCLllA-6586 + UGCUUUUUUCAUCUCGAUUG 20 8199
BCLllA-6587 + AUGCUUUUUUCAUCUCGAUUG 21 8200
BCLllA-6588 + GAUGCUUUUU UCAUCUCGAUUG 22 8201
BCLllA-6589 + GGAUGCUUUUUUCAUCUCGAUUG 23 8202
BCLllA-6590 + UGGAUGCUUUUUUCAUCUCGAUUG 24 8203
BCLllA-6591 + GAGGCUCGGCUGUGGU UG 18 8204
BCLllA-6592 + AGAGGCUCGGCUGUGGUUG 19 8205 BCLllA-6593 + AAGAGGCUCGGCUGUGGUUG 20 8206
BCLllA-6594 + CAAGAGGCUCGGCUGUGGUUG 21 8207
BCLllA-6595 + UCAAGAGGCUCGGCUGUGGUUG 22 8208
BCLllA-6596 + U UCAAGAGGCUCGGCUGUGGUUG 23 8209
BCLllA-6597 + CUUCAAGAGGCUCGGCUGUGGUUG 24 8210
BCLllA-6598 + AUAAGAAUGUCCCCCAAU 18 8211
BCLllA-6599 + AAUAAGAAUGUCCCCCAAU 19 8212
BCLllA-5502 + AAAUAAGAAUGUCCCCCAAU 20 8213
BCLllA-6600 + AAAAUAAGAAUGUCCCCCAAU 21 8214
BCLllA-6601 + AAAAAUAAGAAUGUCCCCCAAU 22 8215
BCLllA-6602 + UAAAAAUAAGAAUGUCCCCCAAU 23 8216
BCLllA-6603 + AUAAAAAUAAGAAUGUCCCCCAAU 24 8217
BCLllA-6604 + CAUCCCAGGCGUGGGGAU 18 8218
BCLllA-6605 + UCAUCCCAGGCGUGGGGAU 19 8219
BCLllA-6606 + CUCAUCCCAGGCGUGGGGAU 20 8220
BCLllA-6607 + ACUCAUCCCAGGCGUGGGGAU 21 8221
BCLllA-6608 + CACUCAUCCCAGGCGUGGGGAU 22 8222
BCLllA-6609 + GCACUCAUCCCAGGCGUGGGGAU 23 8223
BCLllA-6610 + UGCACUCAUCCCAGGCGUGGGGAU 24 8224
BCLllA-6611 + UCAACUUACAAAUACCCU 18 8225
BCLllA-6612 + CUCAACUUACAAAUACCCU 19 8226
BCLllA-6613 + GCUCAACUUACAAAUACCCU 20 8227
BCLllA-6614 + GGCUCAACUUACAAAUACCCU 21 8228
BCLllA-6615 + AGGCUCAACUUACAAAUACCCU 22 8229
BCLllA-6616 + AAGGCUCAACUUACAAAUACCCU 23 8230
BCLllA-6617 + UAAGGCUCAACUUACAAAUACCCU 24 8231
BCLllA-6618 + GGCGAGACAUGGUGGGCU 18 8232
BCLllA-6619 + CGGCGAGACAUGGUGGGCU 19 8233
BCLllA-6620 + GCGGCGAGACAUGGUGGGCU 20 8234
BCLllA-6621 + UGCGGCGAGACAUGGUGGGCU 21 8235
BCLllA-6622 + UUGCGGCGAGACAUGGUGGGCU 22 8236
BCLllA-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 8237
BCLllA-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 8238
BCLllA-6625 + CAGUGCAGAAGUUUAUCU 18 8239
BCLllA-6626 + CCAGUGCAGAAGUUUAUCU 19 8240
BCLllA-6627 + UCCAGUGCAGAAGUU UAUCU 20 8241
BCLllA-6628 + CUCCAGUGCAGAAGUUUAUCU 21 8242
BCLllA-6629 + CCUCCAGUGCAGAAGUU UAUCU 22 8243
BCLllA-6630 + CCCUCCAGUGCAGAAGU UUAUCU 23 8244
BCLllA-6631 + CCCCUCCAGUGCAGAAGUUUAUCU 24 8245
BCLllA-6632 + CUGGCACUGCCCACAGGU 18 8246
BCLllA-6633 + UCUGGCACUGCCCACAGGU 19 8247 BCLllA-6634 + AUCUGGCACUGCCCACAGGU 20 8248
BCLllA-6635 + CAUCUGGCACUGCCCACAGGU 21 8249
BCLllA-6636 + UCAUCUGGCACUGCCCACAGGU 22 8250
BCLllA-6637 + UUCAUCUGGCACUGCCCACAGGU 23 8251
BCLllA-6638 + GU UCAUCUGGCACUGCCCACAGGU 24 8252
BCLllA-6639 + AAGAGGCUCGGCUGUGGU 18 8253
BCLllA-6640 + CAAGAGGCUCGGCUGUGGU 19 8254
BCLllA-5366 + UCAAGAGGCUCGGCUGUGGU 20 8255
BCLllA-6641 + U UCAAGAGGCUCGGCUGUGGU 21 8256
BCLllA-6642 + CUUCAAGAGGCUCGGCUGUGGU 22 8257
BCLllA-6643 + GCU UCAAGAGGCUCGGCUGUGGU 23 8258
BCLllA-6644 + GGCUUCAAGAGGCUCGGCUGUGGU 24 8259
BCLllA-6645 + CCUGCUAUGUGUUCCUGU 18 8260
BCLllA-6646 + ACCUGCUAUGUGUUCCUGU 19 8261
BCLllA-6647 + UACCUGCUAUGUGUUCCUGU 20 8262
BCLllA-6648 + U UACCUGCUAUGUGUUCCUGU 21 8263
BCLllA-6649 + U UUACCUGCUAUGUGU UCCUGU 22 8264
BCLllA-6650 + AUUUACCUGCUAUGUGUUCCUGU 23 8265
BCLllA-6651 + CAU UUACCUGCUAUGUGUUCCUGU 24 8266
BCLllA-6652 + GGAGGUCAUGAUCCCCU U 18 8267
BCLllA-6653 + AGGAGGUCAUGAUCCCCUU 19 8268
BCLllA-6654 + GAGGAGGUCAUGAUCCCCUU 20 8269
BCLllA-6655 + UGAGGAGGUCAUGAUCCCCUU 21 8270
BCLllA-6656 + GUGAGGAGGUCAUGAUCCCCU U 22 8271
BCLllA-6657 + GGUGAGGAGGUCAUGAUCCCCUU 23 8272
BCLllA-6658 + AGGUGAGGAGGUCAUGAUCCCCU U 24 8273
BCLllA-6659 + CUGCUAUGUGUUCCUGUU 18 8274
BCLllA-6660 + CCUGCUAUGUGUUCCUGUU 19 8275
BCLllA-5513 + ACCUGCUAUGUGUUCCUGUU 20 8276
BCLllA-6661 + UACCUGCUAUGUGUUCCUGUU 21 8277
BCLllA-6662 + U UACCUGCUAUGUGUUCCUGUU 22 8278
BCLllA-6663 + U UUACCUGCUAUGUGU UCCUGUU 23 8279
BCLllA-6664 + AUUUACCUGCUAUGUGUUCCUGUU 24 8280
BCLllA-6665 - AUUUUUAUCGAGCACAAA 18 8281
BCLllA-6666 - UAUUUUUAUCGAGCACAAA 19 8282
BCLllA-5342 - U UAUUUUUAUCGAGCACAAA 20 8283
BCLllA-6667 - CUUAUUUUUAUCGAGCACAAA 21 8284
BCLllA-6668 - UCU UAUUUUUAUCGAGCACAAA 22 8285
BCLllA-6669 - UUCUUAUUUU U AU CG AGCACAAA 23 8286
BCLllA-6670 - AUUCUUAUUUU UAUCGAGCACAAA 24 8287
BCLllA-6671 - AGAGGAAUUUGCCCCAAA 18 8288
BCLllA-6672 - UAGAGGAAUUUGCCCCAAA 19 8289 BCLllA-6673 - CUAGAGGAAUUUGCCCCAAA 20 8290
BCLllA-6674 - UCUAGAGGAAUUUGCCCCAAA 21 8291
BCLllA-6675 - AUCUAGAGGAAUUUGCCCCAAA 22 8292
BCLllA-6676 - CAUCUAGAGGAAUUUGCCCCAAA 23 8293
BCLllA-6677 - UCAUCUAGAGGAAUUUGCCCCAAA 24 8294
BCLllA-6678 - CCCCAGCACUUAAGCAAA 18 8295
BCLllA-6679 - ACCCCAGCACUUAAGCAAA 19 8296
BCLllA-5443 - AACCCCAGCACUUAAGCAAA 20 8297
BCLllA-6680 - AAACCCCAGCACUUAAGCAAA 21 8298
BCLllA-6681 - CAAACCCCAGCACUUAAGCAAA 22 8299
BCLllA-6682 - GCAAACCCCAGCACUUAAGCAAA 23 8300
BCLllA-6683 - GGCAAACCCCAGCACUUAAGCAAA 24 8301
BCLllA-6684 - UAUUUUUAUCGAGCACAA 18 8302
BCLllA-6685 - UUAUUUUUAUCGAGCACAA 19 8303
BCLllA-6686 - CUUAUUUUUAUCGAGCACAA 20 8304
BCLllA-6687 - UCUUAUUUUUAUCGAGCACAA 21 8305
BCLllA-6688 - UUCUUAUUUUUAUCGAGCACAA 22 8306
BCLllA-6689 - AUUCUUAUUUUUAUCGAGCACAA 23 8307
BCLllA-6690 - CAUUCUUAUUUUUAUCGAGCACAA 24 8308
BCLllA-6691 - CACCUUCCCCUUCACCAA 18 8309
BCLllA-6692 - CCACCUUCCCCUUCACCAA 19 8310
BCLllA-6693 - GCCACCUUCCCCUUCACCAA 20 8311
BCLllA-6694 - AG CCACCU U CCCCU U CACCAA 21 8312
BCLllA-6695 - AAGCCACCUUCCCCUUCACCAA 22 8313
BCLllA-6696 - UAAGCCACCUUCCCCUUCACCAA 23 8314
BCLllA-6697 - AUAAGCCACCUUCCCCUUCACCAA 24 8315
BCLllA-6698 - ACCCCAGCACUUAAGCAA 18 8316
BCLllA-6699 - AACCCCAGCACUUAAGCAA 19 8317
BCLllA-6700 - AAACCCCAGCACUUAAGCAA 20 8318
BCLllA-6701 - CAAACCCCAGCACUUAAGCAA 21 8319
BCLllA-6702 - GCAAACCCCAGCACUUAAGCAA 22 8320
BCLllA-6703 - G G C A A AC CC C AG C A C U U A AG C A A 23 8321
BCLllA-6704 - AG G CA AACCCC AG CAC U UAAG CAA 24 8322
BCLllA-6705 - GGAACACAUAGCAGGUAA 18 8323
BCLllA-6706 - AGGAACACAUAGCAGGUAA 19 8324
BCLllA-6707 - CAGGAACACAUAGCAGGUAA 20 8325
BCLllA-6708 - ACAGGAACACAUAGCAGGUAA 21 8326
BCLllA-6709 - AACAGGAACACAUAGCAGGUAA 22 8327
BCLllA-6710 - AAA CAGGAACACAUAGCAGGUAA 23 8328
BCLllA-6711 - CAAACAGGAACACAUAGCAGGUAA 24 8329
BCLllA-6712 - CUCCCCUCGUUCUGCACA 18 8330
BCLllA-6713 - CCUCCCCUCGUUCUGCACA 19 8331 BCLllA-5448 - UCCUCCCCUCGUUCUGCACA 20 8332
BCLllA-6714 - CUCCUCCCCUCGUUCUGCACA 21 8333
BCLllA-6715 - UCUCCUCCCCUCGUUCUGCACA 22 8334
BCLllA-6716 - CUCUCCUCCCCUCGUUCUGCACA 23 8335
BCLllA-6717 - CCUCUCCUCCCCUCGUUCUGCACA 24 8336
BCLllA-6718 - UGCCAGAUGAACUUCCCA 18 8337
BCLllA-6719 - GUGCCAGAUGAACUUCCCA 19 8338
BCLllA-6720 - AGUGCCAGAUGAACUUCCCA 20 8339
BCLllA-6721 - CAGUGCCAGAUGAACUUCCCA 21 8340
BCLllA-6722 - GCAGUGCCAGAUGAACUUCCCA 22 8341
BCLllA-6723 - GGCAGUGCCAGAUGAACUUCCCA 23 8342
BCLllA-6724 - GGGCAGUGCCAGAUGAACUUCCCA 24 8343
BCLllA-6725 - G C AG G U AAA UGAGAAGCA 18 8344
BCLllA-6726 - AG C AG G U AAA U G AG A AG C A 19 8345
BCLllA-5451 - U AG C AG G U AAA U G AG A AG C A 20 8346
BCLllA-6727 - AUAGCAGGUAAAUGAGAAGCA 21 8347
BCLllA-6728 - CAUAGCAGGU AAA U GAG A AG C A 22 8348
BCLllA-6729 - ACAUAGCAGGUAAAUGAGAAGCA 23 8349
BCLllA-6730 - CACAUAGCAGGUAAAUGAGAAGCA 24 8350
BCLllA-6731 - CACAGAUAAACUUCUGCA 18 8351
BCLllA-6732 - UCACAGAUAAACUUCUGCA 19 8352
BCLllA-6733 - UUCACAGAUAAACUUCUGCA 20 8353
BCLllA-6734 - UUUCACAGAUAAACUUCUGCA 21 8354
BCLllA-6735 - CUUUCACAGAUAAACUUCUGCA 22 8355
BCLllA-6736 - UCUUUCACAGAUAAACUUCUGCA 23 8356
BCLllA-6737 - UUCUUUCACAGAUAAACUUCUGCA 24 8357
BCLllA-6738 - CCCGUUGGGAGCUCCAGA 18 8358
BCLllA-6739 - GCCCGUUGGGAGCUCCAGA 19 8359
BCLllA-5453 - GGCCCGUUGGGAGCUCCAGA 20 8360
BCLllA-6740 - CGGCCCGUUGGGAGCUCCAGA 21 8361
BCLllA-6741 - ACGGCCCGUUGGGAGCUCCAGA 22 8362
BCLllA-6742 - CACGGCCCGUUGGGAGCUCCAGA 23 8363
BCLllA-6743 - CCACGGCCCGUUGGGAGCUCCAGA 24 8364
BCLllA-6744 - GUUUAUCAACGUCAUCUA 18 8365
BCLllA-6745 - UGUUUAUCAACGUCAUCUA 19 8366
BCLllA-6746 - UUGUUUAUCAACGUCAUCUA 20 8367
BCLllA-6747 - AUUGUUUAUCAACGUCAUCUA 21 8368
BCLllA-6748 - GAUUGUUUAUCAACGUCAUCUA 22 8369
BCLllA-6749 - CGAUUGUUUAUCAACGUCAUCUA 23 8370
BCLllA-6750 - ACGAUUGUUUAUCAACGUCAUCUA 24 8371
BCLllA-6751 - GGGACAUUCUUAUUUUUA 18 8372
BCLllA-6752 - GGGGACAUUCUUAUUUUUA 19 8373 BCLllA-6753 - GGGGGACAUUCUUAUUUUUA 20 8374
BCLllA-6754 - UGGGGGACAUUCUUAUUUUUA 21 8375
BCLllA-6755 - UUGGGGGACAUUCUUAUUUUUA 22 8376
BCLllA-6756 - AUUGGGGGACAUUCUUAUUUUUA 23 8377
BCLllA-6757 - CAUUGGGGGACAUUCUUAUUUUUA 24 8378
BCLllA-6758 - GAGGAAUUUGCCCCAAAC 18 8379
BCLllA-6759 - AGAGGAAUUUGCCCCAAAC 19 8380
BCLllA-5457 - UAGAGGAAUUUGCCCCAAAC 20 8381
BCLllA-6760 - CUAGAGGAAUUUGCCCCAAAC 21 8382
BCLllA-6761 - UCUAGAGGAAUUUGCCCCAAAC 22 8383
BCLllA-6762 - AUCUAGAGGAAUUUGCCCCAAAC 23 8384
BCLllA-6763 - CAUCUAGAGGAAUUUGCCCCAAAC 24 8385
BCLllA-6764 - ACAGAUAAACUUCUGCAC 18 8386
BCLllA-6765 - CACAGAUAAACUUCUGCAC 19 8387
BCLllA-5348 - UCACAGAUAAACUUCUGCAC 20 8388
BCLllA-6766 - UUCACAGAUAAACUUCUGCAC 21 8389
BCLllA-6767 - UUUCACAGAUAAACUUCUGCAC 22 8390
BCLllA-6768 - CUUUCACAGAUAAACUUCUGCAC 23 8391
BCLllA-6769 - UCUUUCACAGAUAAACUUCUGCAC 24 8392
BCLllA-6770 - CCUCCCCUCGUUCUGCAC 18 8393
BCLllA-6771 - UCCUCCCCUCGUUCUGCAC 19 8394
BCLllA-6772 - CUCCUCCCCUCGUUCUGCAC 20 8395
BCLllA-6773 - UCUCCUCCCCUCGUUCUGCAC 21 8396
BCLllA-6774 - CUCUCCUCCCCUCGUUCUGCAC 22 8397
BCLllA-6775 - CCUCUCCUCCCCUCGUUCUGCAC 23 8398
BCLllA-6776 - GCCUCUCCUCCCCUCGUUCUGCAC 24 8399
BCLllA-6777 - AAAAAAGCAUCCAAUCCC 18 8400
BCLllA-6778 - G A A A A A AG C A U C C A A U C C C 19 8401
BCLllA-6779 - UGAAAAAAGCAUCCAAUCCC 20 8402
BCLllA-6780 - AUGAAAAAAGCAUCCAAUCCC 21 8403
BCLllA-6781 - G A U G A A A A A AG CAUCCAAUCCC 22 8404
BCLllA-6782 - AGAUGAAAAAAGCAUCCAAUCCC 23 8405
BCLllA-6783 - GAGAUGAAAAAAGCAUCCAAUCCC 24 8406
BCLllA-6784 - AGCAGGUAAAUGAGAAGC 18 8407
BCLllA-6785 - UAGCAGGUAAAUGAGAAGC 19 8408
BCLllA-6786 - AUAGCAGGUAAAUGAGAAGC 20 8409
BCLllA-6787 - CAUAGCAGGUAAAUGAGAAGC 21 8410
BCLllA-6788 - ACAUAGCAGGU AAA U G AG A AG C 22 8411
BCLllA-6789 - CACAUAGCAGGU AAA U G AG A AG C 23 8412
BCLllA-6790 - ACACAUAGCAGGUAAAUGAGAAGC 24 8413
BCLllA-6791 - GAGCUCUAAUCCCCACGC 18 8414
BCLllA-6792 - GGAGCUCUAAUCCCCACGC 19 8415 BCLllA-6793 - UGGAGCUCUAAUCCCCACGC 20 8416
BCLllA-6794 - AUGGAGCUCUAAUCCCCACGC 21 8417
BCLllA-6795 - CAUGGAGCUCUAAUCCCCACGC 22 8418
BCLllA-6796 - ACAUGGAGCUCUAAUCCCCACGC 23 8419
BCLllA-6797 - CACAUGGAGCUCUAAUCCCCACGC 24 8420
BCLllA-6798 - UUGGCAUCCAGGUCACGC 18 8421
BCLllA-6799 - GUUGGCAUCCAGGUCACGC 19 8422
BCLllA-6800 - GGUUGGCAUCCAGGUCACGC 20 8423
BCLllA-6801 - AGGUUGGCAUCCAGGUCACGC 21 8424
BCLllA-6802 - GAGGUUGGCAUCCAGGUCACGC 22 8425
BCLllA-6803 - GGAGGUUGGCAUCCAGGUCACGC 23 8426
BCLllA-6804 - UGGAGGUUGGCAUCCAGGUCACGC 24 8427
BCLllA-6805 - UUGUUUAUCAACGUCAUC 18 8428
BCLllA-6806 - AUUGUUUAUCAACGUCAUC 19 8429
BCLllA-6807 - GAUUGUUUAUCAACGUCAUC 20 8430
BCLllA-6808 - CGAUUGUUUAUCAACGUCAUC 21 8431
BCLllA-6809 - ACGAUUGUUUAUCAACGUCAUC 22 8432
BCLllA-6810 - GACGAUUGUUUAUCAACGUCAUC 23 8433
BCLllA-6811 - UGACGAUUGUUUAUCAACGUCAUC 24 8434
BCLllA-6812 - CAACCACAGCCGAGCCUC 18 8435
BCLllA-6813 - CCAACCACAGCCGAGCCUC 19 8436
BCLllA-6814 - UCCAACCACAGCCGAGCCUC 20 8437
BCLllA-6815 - CUCCAACCACAGCCGAGCCUC 21 8438
BCLllA-6816 - UCUCCAACCACAGCCGAGCCUC 22 8439
BCLllA-6817 - UUCUCCAACCACAGCCGAGCCUC 23 8440
BCLllA-6818 - UUUCUCCAACCACAGCCGAGCCUC 24 8441
BCLllA-6819 - ACGGCCCGUUGGGAGCUC 18 8442
BCLllA-6820 - CACGGCCCGUUGGGAGCUC 19 8443
BCLllA-6821 - CCACGGCCCGUUGGGAGCUC 20 8444
BCLllA-6822 - ACCACGGCCCGUUGGGAGCUC 21 8445
BCLllA-6823 - GACCACGGCCCGUUGGGAGCUC 22 8446
BCLllA-6824 - AGACCACGGCCCGUUGGGAGCUC 23 8447
BCLllA-6825 - CAGACCACGGCCCGUUGGGAGCUC 24 8448
BCLllA-6826 - AUUAUUUUGCAGGUAAAG 18 8449
BCLllA-6827 - UAUUAUUUUGCAGGUAAAG 19 8450
BCLllA-6828 - GU AUUAUUUUGCAGGUAAAG 20 8451
BCLllA-6829 - UGUAUUAUUUUGCAGGUAAAG 21 8452
BCLllA-6830 - UUGUAUUAUUUUGCAGGUAAAG 22 8453
BCLllA-6831 - GUUGUAUUAUUUUGCAGGUAAAG 23 8454
BCLllA-6832 - UGUUGUAUUAUUUUGCAGGUAAAG 24 8455
BCLllA-6833 - AGGUAAAUGAGAAGCAAG 18 8456
BCLllA-6834 - C AG G U AAA UGAGAAGCAAG 19 8457 BCLllA-6835 - GCAGGUAAAUGAGAAGCAAG 20 8458
BCLllA-6836 - AG C AG G U AAA U G AG A AG C A AG 21 8459
BCLllA-6837 - U AG C AG G U AAA U G AG A AG C A AG 22 8460
BCLllA-6838 - AUAGCAGGUAAAUGAGAAGCAAG 23 8461
BCLllA-6839 - CAUAGCAGGUAAAUGAGAAGCAAG 24 8462
BCLllA-6840 - CCGCAGGGUAUUUGUAAG 18 8463
BCLllA-6841 - CCCGCAGGGUAUUUGUAAG 19 8464
BCLllA-6842 - CCCCGCAGGGUAUUUGUAAG 20 8465
BCLllA-6843 - GCCCCGCAGGGUAUUUGUAAG 21 8466
BCLllA-6844 - UGCCCCGCAGGGUAUUUGUAAG 22 8467
BCLllA-6845 - AUGCCCCGCAGGGUAUUUGUAAG 23 8468
BCLllA-6846 - UAUGCCCCGCAGGGUAUUUGUAAG 24 8469
BCLllA-6847 - UUGUUUCU CCAACCACAG 18 8470
BCLllA-6848 - UUUGUUUCUCCAACCACAG 19 8471
BCLllA-6849 - UUUUGUUUCUCCAACCACAG 20 8472
BCLllA-6850 - CUUUUGUUUCUCCAACCACAG 21 8473
BCLllA-6851 - GCUUUUGUUUCUCCAACCACAG 22 8474
BCLllA-6852 - UGCUUUUGUUUCUCCAACCACAG 23 8475
BCLllA-6853 - GUGCUUUUGUUUCUCCAACCACAG 24 8476
BCLllA-6854 - ACCUGUGGGCAGUGCCAG 18 8477
BCLllA-6855 - CACCUGUGGGCAGUGCCAG 19 8478
BCLllA-6856 - UCACCUGUGGGCAGUGCCAG 20 8479
BCLllA-6857 - CUCACCUGUGGGCAGUGCCAG 21 8480
BCLllA-6858 - CCUCACCUGUGGGCAGUGCCAG 22 8481
BCLllA-6859 - UCCUCACCUGUGGGCAGUGCCAG 23 8482
BCLllA-6860 - CUCCUCACCUGUGGGCAGUGCCAG 24 8483
BCLllA-6861 - GCCCGUUGGGAGCUCCAG 18 8484
BCLllA-6862 - GGCCCGUUGGGAGCUCCAG 19 8485
BCLllA-6863 - CGGCCCGUUGGGAGCUCCAG 20 8486
BCLllA-6864 - ACGGCCCGUUGGGAGCUCCAG 21 8487
BCLllA-6865 - CACGGCCCGUUGGGAGCUCCAG 22 8488
BCLllA-6866 - CCACGGCCCGUUGGGAGCUCCAG 23 8489
BCLllA-6867 - ACCACGGCCCGUUGGGAGCUCCAG 24 8490
BCLllA-6868 - UCCCCUUCACCAAUCGAG 18 8491
BCLllA-6869 - UUCCCCUUCACCAAUCGAG 19 8492
BCLllA-6870 - CUUCCCCUUCACCAAUCGAG 20 8493
BCLllA-6871 - CCUUCCCCUUCACCAAUCGAG 21 8494
BCLllA-6872 - ACCUUCCCCUUCACCAAUCGAG 22 8495
BCLllA-6873 - CACCU U CCCCU U CACCAAU CG AG 23 8496
BCLllA-6874 - CCACCUUCCCCUUCACCAAUCGAG 24 8497
BCLllA-6875 - GAACCAGACCACGGCCCG 18 8498
BCLllA-6876 - UGAACCAGACCACGGCCCG 19 8499 BCLllA-6877 - AUGAACCAGACCACGGCCCG 20 8500
BCLllA-6878 - GAUGAACCAGACCACGGCCCG 21 8501
BCLllA-6879 - UGAUGAACCAGACCACGGCCCG 22 8502
BCLllA-6880 - AUGAUGAACCAGACCACGGCCCG 23 8503
BCLllA-6881 - GAUGAUGAACCAGACCACGGCCCG 24 8504
BCLllA-6882 - AAAAAGCAUCCAAUCCCG 18 8505
BCLllA-6883 - A A A A A AG C A U C C A A U C C CG 19 8506
BCLllA-5358 - GAAAAAAGCAUCCAAUCCCG 20 8507
BCLllA-6884 - UGAAAAAAGCAUCCAAUCCCG 21 8508
BCLllA-6885 - AUGAAAAAAGCAUCCAAUCCCG 22 8509
BCLllA-6886 - GAUGAAAAAAGCAUCCAAUCCCG 23 8510
BCLllA-6887 - AGAUGAAAAAAGCAUCCAAUCCCG 24 8511
BCLllA-6888 - GAUAAACUUCUGCACUGG 18 8512
BCLllA-6889 - AGAUAAACUUCUGCACUGG 19 8513
BCLllA-5360 - CAGAUAAACUUCUGCACUGG 20 8514
BCLllA-6890 - ACAGAUAAACUUCUGCACUGG 21 8515
BCLllA-6891 - CACAGAUAAACUUCUGCACUGG 22 8516
BCLllA-6892 - UCA CAGAUAAACUUCUGCACUGG 23 8517
BCLllA-6893 - UUCACAGAUAAACUUCUGCACUGG 24 8518
BCLllA-6894 - AAGCCAUUCUUACAGAUG 18 8519
BCLllA-6895 - GAAGCCAUUCUUACAGAUG 19 8520
BCLllA-6896 - UGAAGCCAUUCUUACAGAUG 20 8521
BCLllA-6897 - UUGAAGCCAUUCUUACAGAUG 21 8522
BCLllA-6898 - CUUGAAGCCAUUCUUACAGAUG 22 8523
BCLllA-6899 - UCUUGAAGCCAUUCUUACAGAUG 23 8524
BCLllA-6900 - CUCUUGAAGCCAUUCUUACAGAUG 24 8525
BCLllA-6901 - AGAUAAACUUCUGCACUG 18 8526
BCLllA-6902 - CAGAUAAACUUCUGCACUG 19 8527
BCLllA-6903 - ACAGAUAAACUUCUGCACUG 20 8528
BCLllA-6904 - CACAGAUAAACUUCUGCACUG 21 8529
BCLllA-6905 - UCACAGAUAAACUUCUGCACUG 22 8530
BCLllA-6906 - UUCACAGAUAAACUUCUGCACUG 23 8531
BCLllA-6907 - UUUCACAGAUAAACUUCUGCACUG 24 8532
BCLllA-6908 - CAGAUGAACUUCCCAUUG 18 8533
BCLllA-6909 - CCAGAUGAACUUCCCAUUG 19 8534
BCLllA-5499 - GCCAGAUGAACUUCCCAUUG 20 8535
BCLllA-6910 - UGCCAGAUGAACUUCCCAUUG 21 8536
BCLllA-6911 - GUGCCAGAUGAACUUCCCAUUG 22 8537
BCLllA-6912 - AGUGCCAGAUGAACUUCCCAUUG 23 8538
BCLllA-6913 - CAGUGCCAGAUGAACUUCCCAUUG 24 8539
BCLllA-6914 - AACACAUAGCAGGUAAAU 18 8540
BCLllA-6915 - GAACACAUAGCAGGUAAAU 19 8541 BCLllA-6916 - GGAACACAUAGCAGGUAAAU 20 8542
BCLllA-6917 - AGGAACACAUAGCAGGUAAAU 21 8543
BCLllA-6918 - CAGGAACACAUAGCAGGUAAAU 22 8544
BCLllA-6919 - ACAGGAACACAUAGCAGGUAAAU 23 8545
BCLllA-6920 - AACAGGAACACAUAGCAGGUAAAU 24 8546
BCLllA-6921 - GCCAGAUGAACUUCCCAU 18 8547
BCLllA-6922 - UGCCAGAUGAACUUCCCAU 19 8548
BCLllA-5503 - GUGCCAGAUGAACUUCCCAU 20 8549
BCLllA-6923 - AGUGCCAGAUGAACUUCCCAU 21 8550
BCLllA-6924 - CAGUGCCAGAUGAACUUCCCAU 22 8551
BCLllA-6925 - GCAGUGCCAGAUGAACUUCCCAU 23 8552
BCLllA-6926 - GGCAGUGCCAGAUGAACUUCCCAU 24 8553
BCLllA-6927 - AUCAUGACCUCCUCACCU 18 8554
BCLllA-6928 - GAUCAUGACCUCCUCACCU 19 8555
BCLllA-6929 - GGAUCAUGACCUCCUCACCU 20 8556
BCLllA-6930 - GGGAUCAUGACCUCCUCACCU 21 8557
BCLllA-6931 - GGGGAUCAUGACCUCCUCACCU 22 8558
BCLllA-6932 - AGGGGAUCAUGACCUCCUCACCU 23 8559
BCLllA-6933 - AAGGGGAUCAUGACCUCCUCACCU 24 8560
BCLllA-6934 - GCAAUGGCAGCCUCUGCU 18 8561
BCLllA-6935 - UGCAAUGGCAGCCUCUGCU 19 8562
BCLllA-6936 - AUGCAAUGGCAGCCUCUGCU 20 8563
BCLllA-6937 - AAUGCAAUGGCAGCCUCUGCU 21 8564
BCLllA-6938 - CAAUGCAAUGGCAGCCUCUGCU 22 8565
BCLllA-6939 - ACAAUGCAAUGGCAGCCUCUGCU 23 8566
BCLllA-6940 - AACAAUGCAAUGGCAGCCUCUGCU 24 8567
BCLllA-6941 - AACCAGACCACGGCCCGU 18 8568
BCLllA-6942 - GAACCAGACCACGGCCCGU 19 8569
BCLllA-5363 - UGAACCAGACCACGGCCCGU 20 8570
BCLllA-6943 - AUGAACCAGACCACGGCCCGU 21 8571
BCLllA-6944 - GAUGAACCAGACCACGGCCCGU 22 8572
BCLllA-6945 - UGAUGAACCAGACCACGGCCCGU 23 8573
BCLllA-6946 - AUGAUGAACCAGACCACGGCCCGU 24 8574
BCLllA-6947 - CCAGAUGAACUUCCCAUU 18 8575
BCLllA-6948 - GCCAGAUGAACUUCCCAUU 19 8576
BCLllA-5511 - UGCCAGAUGAACUUCCCAUU 20 8577
BCLllA-6949 - GUGCCAGAUGAACUUCCCAUU 21 8578
BCLllA-6950 - AGUGCCAGAUGAACUUCCCAUU 22 8579
BCLllA-6951 - CAGUGCCAGAUGAACUUCCCAUU 23 8580
BCLllA-6952 - GCAGUGCCAGAUGAACUUCCCAUU 24 8581
BCLllA-6953 - ACCAG ACCACGG CCCG U U 18 8582
BCLllA-6954 - AACCAGACCACGGCCCGUU 19 8583 BCLllA-5512 - G AACCAG ACCACGG CCCG U U 20 8584
BCLllA-6955 - UGAACCAGACCACGGCCCGUU 21 8585
BCLllA-6956 - AUGAACCAGACCACGGCCCGUU 22 8586
BCLllA-6957 - GAUGAACCAGACCACGGCCCGUU 23 8587
BCLllA-6958 - UGAUGAACCAGACCACGGCCCGUU 24 8588
Table 16D provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fourth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16D
Figure imgf000334_0001
BCLllA-6979 + AGUCUCCGAAGCUAAGGA 18 8610
BCLllA-6980 + GAGUCUCCGAAGCUAAGGA 19 8611
BCLllA-5923 + GGAGUCUCCGAAGCUAAGGA 20 8612
BCLllA-6981 + UGGAGUCUCCGAAGCUAAGGA 21 8613
BCLllA-6982 + CUGGAGUCUCCGAAGCUAAGGA 22 8614
BCLllA-6983 + UCUGGAGUCUCCGAAGCUAAGGA 23 8615
BCLllA-6984 + GUCUGGAGUCUCCGAAGCUAAGGA 24 8616
BCLllA-6985 + GGACUAAACAGGGGGGGA 18 8617
BCLllA-6986 + UGGACUAAACAGGGGGGGA 19 8618
BCLllA-6987 + GUGGACUAAACAGGGGGGGA 20 8619
BCLllA-6988 + GGUGGACUAAACAGGGGGGGA 21 8620
BCLllA-6989 + UGGUGGACUAAACAGGGGGGGA 22 8621
BCLllA-6990 + GUGGUGGACUAAACAGGGGGGGA 23 8622
BCLllA-6991 + GGUGGUGGACUAAACAGGGGGGGA 24 8623
BCLllA-6992 + UUCUGCACCUAGUCCUGA 18 8624
BCLllA-6993 + AUUCUGCACCUAGUCCUGA 19 8625
BCLllA-5937 + CAUUCUGCACCUAGUCCUGA 20 8626
BCLllA-6994 + ACAUUCUGCACCUAGUCCUGA 21 8627
BCLllA-6995 + GACAUUCUGCACCUAGUCCUGA 22 8628
BCLllA-6996 + GGACAUUCUGCACCUAGUCCUGA 23 8629
BCLllA-6997 + AGGACAUUCUGCACCUAGUCCUGA 24 8630
BCLllA-6998 + GCACCCUGUCAAAGGCAC 18 8631
BCLllA-6999 + AGCACCCUGUCAAAGGCAC 19 8632
BCLllA-7000 + C AG CACCCUGU CAAAG G CAC 20 8633
BCLllA-7001 + GCAGCACCCUGUCAAAGGCAC 21 8634
BCLllA-7002 + CGCAGCACCCUGUCAAAGGCAC 22 8635
BCLllA-7003 + CCGCAGCACCCUGUCAAAGGCAC 23 8636
BCLllA-7004 + ACCGCAGCACCCUGUCAAAGGCAC 24 8637
BCLllA-7005 + UAAGUAGAUUCUUAAUCC 18 8638
BCLllA-7006 + CUAAGUAGAUUCUUAAUCC 19 8639
BCLllA-7007 + UCUAAGUAGAUUCUUAAUCC 20 8640
BCLllA-7008 + UUCUAAGUAGAUUCU UAAUCC 21 8641
BCLllA-7009 + UUUCUAAGUAGAUUCUUAAUCC 22 8642
BCLllA-7010 + CUUUCUAAGUAGAUUCUUAAUCC 23 8643
BCLllA-7011 + GCUUUCUAAGUAGAUUCUUAAUCC 24 8644
BCLllA-7012 + GGCGGCUUGCUACCUGGC 18 8645
BCLllA-7013 + GGGCGGCUUGCUACCUGGC 19 8646
BCLllA-6036 + AGGGCGGCUUGCUACCUGGC 20 8647
BCLllA-7014 + AAGGGCGGCUUGCUACCUGGC 21 8648
BCLllA-7015 + GAAGGGCGGCUUGCUACCUGGC 22 8649
BCLllA-7016 + GGAAGGGCGGCUUGCUACCUGGC 23 8650
BCLllA-7017 + AGGAAGGGCGGCUUGCUACCUGGC 24 8651 BCLllA-7018 + GCGCUUCAGCUUGCUGGC 18 8652
BCLllA-7019 + GGCGCUUCAGCUUGCUGGC 19 8653
BCLllA-7020 + UGGCGCU UCAGCUUGCUGGC 20 8654
BCLllA-7021 + GUGGCGCU UCAGCUUGCUGGC 21 8655
BCLllA-7022 + UGUGGCGCUUCAGCU UGCUGGC 22 8656
BCLllA-7023 + AUGUGGCGCU UCAGCU UGCUGGC 23 8657
BCLllA-7024 + CAUGUGGCGCUUCAGCUUGCUGGC 24 8658
BCLllA-7025 + CUCCUCGUCCCCGUUCUC 18 8659
BCLllA-7026 + CCUCCUCGUCCCCGUUCUC 19 8660
BCLllA-6050 + UCCUCCUCGUCCCCGUUCUC 20 8661
BCLllA-7027 + U UCCUCCUCGUCCCCGU UCUC 21 8662
BCLllA-7028 + CUUCCUCCUCGUCCCCGUUCUC 22 8663
BCLllA-7029 + UCUUCCUCCUCGUCCCCGU UCUC 23 8664
BCLllA-7030 + CUCUUCCUCCUCGUCCCCGUUCUC 24 8665
BCLllA-7031 + AGGCAAAAGGCGAUUGUC 18 8666
BCLllA-7032 + GAGGCAAAAGGCGAUUGUC 19 8667
BCLllA-6054 + GGAGGCAAAAGGCGAUUGUC 20 8668
BCLllA-7033 + AGGAGGCAAAAGGCGAU UGUC 21 8669
BCLllA-7034 + GAGGAGGCAAAAGGCGAUUGUC 22 8670
BCLllA-7035 + CGAGGAGGCAAAAGGCGAUUGUC 23 8671
BCLllA-7036 + ACGAGGAGGCAAAAGGCGAUUGUC 24 8672
BCLllA-7037 + AGCUCUCUGGGUACUACG 18 8673
BCLllA-7038 + GAGCUCUCUGGGUACUACG 19 8674
BCLllA-7039 + UGAGCUCUCUGGGUACUACG 20 8675
BCLllA-7040 + UUGAGCUCUCUGGGUACUACG 21 8676
BCLllA-7041 + CUUGAGCUCUCUGGGUACUACG 22 8677
BCLllA-7042 + UCUUGAGCUCUCUGGGUACUACG 23 8678
BCLllA-7043 + AUCUUGAGCUCUCUGGGUACUACG 24 8679
BCLllA-7044 + UGAAGGGAUACCAACCCG 18 8680
BCLllA-7045 + CUGAAGGGAUACCAACCCG 19 8681
BCLllA-6084 + CCUGAAGGGAUACCAACCCG 20 8682
BCLllA-7046 + UCCUGAAGGGAUACCAACCCG 21 8683
BCLllA-7047 + GUCCUGAAGGGAUACCAACCCG 22 8684
BCLllA-7048 + AGUCCUGAAGGGAUACCAACCCG 23 8685
BCLllA-7049 + UAGUCCUGAAGGGAUACCAACCCG 24 8686
BCLllA-7050 + GCAAACUCCCGUUCUCCG 18 8687
BCLllA-7051 + CGCAAACUCCCGUUCUCCG 19 8688
BCLllA-6094 + GCGCAAACUCCCGUUCUCCG 20 8689
BCLllA-7052 + AGCGCAAACUCCCGUUCUCCG 21 8690
BCLllA-7053 + AAGCGCAAACUCCCGUUCUCCG 22 8691
BCLllA-7054 + GAAGCGCAAACUCCCGUUCUCCG 23 8692
BCLllA-7055 + AGAAGCGCAAACUCCCGUUCUCCG 24 8693 BCLllA-7056 + GGCUGGGAGGGAGGAGGG 18 8694
BCLllA-7057 + GGGCUGGGAGGGAGGAGGG 19 8695
BCLllA-7058 + GGGGCUGGGAGGGAGGAGGG 20 8696
BCLllA-7059 + GGGGGCUGGGAGGGAGGAGGG 21 8697
BCLllA-7060 + CGGGGGCUGGGAGGGAGGAGGG 22 8698
BCLllA-7061 + CCGGGGGCUGGGAGGGAGGAGGG 23 8699
BCLllA-7062 + ACCGGGGGCUGGGAGGGAGGAGGG 24 8700
BCLllA-7063 + UGGUGGACUAAACAGGGG 18 8701
BCLllA-7064 + GUGGUGGACUAAACAGGGG 19 8702
BCLllA-6139 + GGUGGUGGACUAAACAGGGG 20 8703
BCLllA-7065 + CGGUGGUGGACUAAACAGGGG 21 8704
BCLllA-7066 + UCGGUGGUGGACUAAACAGGGG 22 8705
BCLllA-7067 + CUCGGUGGUGGACUAAACAGGGG 23 8706
BCLllA-7068 + UCUCGGUGGUGGACUAAACAGGGG 24 8707
BCLllA-7069 + AAGAGAAACCAUGCACUG 18 8708
BCLllA-7070 + CAAGAGAAACCAUGCACUG 19 8709
BCLllA-7071 + GCAAGAGAAACCAUGCACUG 20 8710
BCLllA-7072 + UGCAAGAGAAACCAUGCACUG 21 8711
BCLllA-7073 + U UGCAAGAGAAACCAUGCACUG 22 8712
BCLllA-7074 + G U U G C AAG AG AAACC AU G CAC U G 23 8713
BCLllA-7075 + U G U U G C AAG AG AAACC AU G CAC U G 24 8714
BCLllA-7076 + GUCAAAGGCACUCGGGUG 18 8715
BCLllA-7077 + UGUCAAAGGCACUCGGGUG 19 8716
BCLllA-7078 + CUGUCAAAGGCACUCGGGUG 20 8717
BCLllA-7079 + CCUGUCAAAGGCACUCGGGUG 21 8718
BCLllA-7080 + CCCUGUCAAAGGCACUCGGGUG 22 8719
BCLllA-7081 + ACCCUGUCAAAGGCACUCGGGUG 23 8720
BCLllA-7082 + CACCCUGUCAAAGGCACUCGGGUG 24 8721
BCLllA-7083 + CCCACCAAGUCGCUGGUG 18 8722
BCLllA-7084 + GCCCACCAAGUCGCUGGUG 19 8723
BCLllA-7085 + UGCCCACCAAGUCGCUGGUG 20 8724
BCLllA-7086 + CUGCCCACCAAGUCGCUGGUG 21 8725
BCLllA-7087 + GCUGCCCACCAAGUCGCUGGUG 22 8726
BCLllA-7088 + CGCUGCCCACCAAGUCGCUGGUG 23 8727
BCLllA-7089 + GCGCUGCCCACCAAGUCGCUGGUG 24 8728
BCLllA-7090 + GGGGUUAUUGUCUGCAAU 18 8729
BCLllA-7091 + AGGGGUUAUUGUCUGCAAU 19 8730
BCLllA-7092 + AAGGGGUUAUUGUCUGCAAU 20 8731
BCLllA-7093 + AAAGGGGUUAUUGUCUGCAAU 21 8732
BCLllA-7094 + UAAAGGGGUUAUUGUCUGCAAU 22 8733
BCLllA-7095 + U UAAAGGGGUUAUUGUCUGCAAU 23 8734 BCLllA-7096 + GU UAAAGGGGUUAUUGUCUGCAAU 24
8735
BCLllA-7097 + CUGGGUACUACGCCGAAU 18 8736
BCLllA-7098 + UCUGGGUACUACGCCGAAU 19 8737
BCLllA-6182 + CUCUGGGUACUACGCCGAAU 20 8738
BCLllA-7099 + UCUCUGGGUACUACGCCGAAU 21 8739
BCLllA-7100 + CUCUCUGGGUACUACGCCGAAU 22 8740
BCLllA-7101 + GCUCUCUGGGUACUACGCCGAAU 23 8741
BCLllA-7102 + AGCUCUCUGGGUACUACGCCGAAU 24 8742
BCLllA-7103 + CGUAGCCGGCGAGCCACU 18 8743
BCLllA-7104 + GCGUAGCCGGCGAGCCACU 19 8744
BCLllA-7105 + CGCGUAGCCGGCGAGCCACU 20 8745
BCLllA-7106 + CCGCGUAGCCGGCGAGCCACU 21 8746
BCLllA-7107 + GCCGCGUAGCCGGCGAGCCACU 22 8747
BCLllA-7108 + GGCCGCGUAGCCGGCGAGCCACU 23 8748
BCLllA-7109 + AGGCCGCGUAGCCGGCGAGCCACU 24 8749
BCLllA-7110 + CCACACAUCUUGAGCUCU 18 8750
BCLllA-7111 + GCCACACAUCUUGAGCUCU 19 8751
BCLllA-7112 + UGCCACACAUCUUGAGCUCU 20 8752
BCLllA-7113 + CUGCCACACAUCUUGAGCUCU 21 8753
BCLllA-7114 + ACUGCCACACAUCUUGAGCUCU 22 8754
BCLllA-7115 + AACUGCCACACAUCUUGAGCUCU 23 8755
BCLllA-7116 + AAACUGCCACACAUCUUGAGCUCU 24 8756
BCLllA-7117 + CGU UCUCCGGGAUCAGGU 18 8757
BCLllA-7118 + CCGUUCUCCGGGAUCAGGU 19 8758
BCLllA-6223 + CCCGUUCUCCGGGAUCAGGU 20 8759
BCLllA-7119 + CCCCGUUCUCCGGGAUCAGGU 21 8760
BCLllA-7120 + UCCCCGUUCUCCGGGAUCAGGU 22 8761
BCLllA-7121 + GUCCCCGUUCUCCGGGAUCAGGU 23 8762
BCLllA-7122 + CGUCCCCGUUCUCCGGGAUCAGGU 24 8763
BCLllA-7123 + CCAGGCGCUCUAUGCGGU 18 8764
BCLllA-7124 + CCCAGGCGCUCUAUGCGGU 19 8765
BCLllA-6226 + CCCCAGGCGCUCUAUGCGGU 20 8766
BCLllA-7125 + CCCCCAGGCGCUCUAUGCGGU 21 8767
BCLllA-7126 + GCCCCCAGGCGCUCUAUGCGGU 22 8768
BCLllA-7127 + CGCCCCCAGGCGCUCUAUGCGGU 23 8769
BCLllA-7128 + CCGCCCCCAGGCGCUCUAUGCGGU 24 8770
BCLllA-7129 - U UCCCAGCCACCUCUCCA 18 8771
BCLllA-7130 - CUUCCCAGCCACCUCUCCA 19 8772
BCLllA-5903 - CCUUCCCAGCCACCUCUCCA 20 8773
BCLllA-7131 - UCCUUCCCAGCCACCUCUCCA 21 8774
BCLllA-7132 - GUCCUUCCCAGCCACCUCUCCA 22 8775 BCLllA-7133 - UGUCCUUCCCAGCCACCUCUCCA 23 8776
BCLllA-7134 - AUGUCCUUCCCAGCCACCUCUCCA 24 8777
BCLllA-7135 - AGCGCAUCAAGCUCGAGA 18 8778
BCLllA-7136 - AAGCGCAUCAAGCUCGAGA 19 8779
BCLllA-5919 - UAAGCGCAUCAAGCUCGAGA 20 8780
BCLllA-7137 - CUAAGCGCAUCAAGCUCGAGA 21 8781
BCLllA-7138 - UCU AAGCGCAUCAAGCUCGAGA 22 8782
BCLllA-7139 - CUCUAAGCGCAUCAAGCUCGAGA 23 8783
BCLllA-7140 - UCUCUAAGCGCAUCAAGCUCGAGA 24 8784
BCLllA-7141 - GGAGCUGACGGAGAGCGA 18 8785
BCLllA-7142 - AGGAGCUGACGGAGAGCGA 19 8786
BCLllA-7143 - GAGGAGCUGACGGAGAGCGA 20 8787
BCLllA-7144 - GGAGGAGCUGACGGAGAGCGA 21 8788
BCLllA-7145 - AGGAGGAGCUGACGGAGAGCGA 22 8789
BCLllA-7146 - GAGGAGGAGCUGACGGAGAGCGA 23 8790
BCLllA-7147 - GGAGGAGGAGCUGACGGAGAGCGA 24 8791
BCLllA-7148 - UCACCCGAGUGCCUUUGA 18 8792
BCLllA-7149 - AUCACCCGAGUGCCUUUGA 19 8793
BCLllA-7150 - CAUCACCCGAGUGCCUUUGA 20 8794
BCLllA-7151 - CCAUCACCCGAGUGCCUUUGA 21 8795
BCLllA-7152 - CCCAUCACCCGAGUGCCUUUGA 22 8796
BCLllA-7153 - ACCCAUCACCCGAGUGCCUUUGA 23 8797
BCLllA-7154 - CACCCAUCACCCGAGUGCCUUUGA 24 8798
BCLllA-7155 - GAGCACUCCUCGGAGAAC 18 8799
BCLllA-7156 - GGAGCACUCCUCGGAGAAC 19 8800
BCLllA-5949 - CGGAGCACUCCUCGGAGAAC 20 8801
BCLllA-7157 - UCGGAGCACUCCUCGGAGAAC 21 8802
BCLllA-7158 - GUCGGAGCACUCCUCGGAGAAC 22 8803
BCLllA-7159 - CGUCGGAGCACUCCUCGGAGAAC 23 8804
BCLllA-7160 - UCGUCGGAGCACUCCUCGGAGAAC 24 8805
BCLllA-7161 - GCCCUGGCCACCCAUCAC 18 8806
BCLllA-7162 - GGCCCUGGCCACCCAUCAC 19 8807
BCLllA-7163 - UGGCCCUGGCCACCCAUCAC 20 8808
BCLllA-7164 - AUGGCCCUGGCCACCCAUCAC 21 8809
BCLllA-7165 - GAUGGCCCUGGCCACCCAUCAC 22 8810
BCLllA-7166 - AGAUGGCCCUGGCCACCCAUCAC 23 8811
BCLllA-7167 - GAGAUGGCCCUGGCCACCCAUCAC 24 8812
BCLllA-7168 - UUAACCUGCUAAGAAUAC 18 8813
BCLllA-7169 - UUUAACCUGCUAAGAAUAC 19 8814
BCLllA-7170 - CUUUAACCUGCUAAGAAUAC 20 8815
BCLllA-7171 - CCUUUAACCUGCUAAGAAUAC 21 8816
BCLllA-7172 - CCCUUUAACCUGCUAAGAAUAC 22 8817 BCLllA-7173 - CCCCUUUAACCUGCUAAGAAUAC 23 8818
BCLllA-7174 - ACCCCUUUAACCUGCUAAGAAUAC 24 8819
BCLllA-7175 - CGGAAGUCCCCUGACCCC 18 8820
BCLllA-7176 - ACGGAAGUCCCCUGACCCC 19 8821
BCLllA-7177 - CACGGAAGUCCCCUGACCCC 20 8822
BCLllA-7178 - ACACGGAAGUCCCCUGACCCC 21 8823
BCLllA-7179 - AACACGGAAGUCCCCUGACCCC 22 8824
BCLllA-7180 - GAACACGGAAGUCCCCUGACCCC 23 8825
BCLllA-7181 - CGAACACGGAAGUCCCCUGACCCC 24 8826
BCLllA-7182 - AG AAAAU U UG AAG CCCCC 18 8827
BCLllA-7183 - GAGAAAAUUUGAAGCCCCC 19 8828
BCLllA-5969 - UGAGAAAAUUUGAAGCCCCC 20 8829
BCLllA-7184 - CUGAGAAAAUUUGAAGCCCCC 21 8830
BCLllA-7185 - UCUGAGAAAAUUUGAAGCCCCC 22 8831
BCLllA-7186 - UUCUGAGAAAAUUUGAAGCCCCC 23 8832
BCLllA-7187 - GUUCUGAGAAAAUUUGAAGCCCCC 24 8833
BCLllA-7188 - GCUAUGGAGCCUCCCGCC 18 8834
BCLllA-7189 - GGCUAUGGAGCCUCCCGCC 19 8835
BCLllA-7190 - UGGCUAUGGAGCCUCCCGCC 20 8836
BCLllA-7191 - AUGGCUAUGGAGCCUCCCGCC 21 8837
BCLllA-7192 - AAUGGCUAUGGAGCCUCCCGCC 22 8838
BCLllA-7193 - CAAUGGCUAUGGAGCCUCCCGCC 23 8839
BCLllA-7194 - CCAAUGGCUAUGGAGCCUCCCGCC 24 8840
BCLllA-7195 - AACACGCACAGAACACUC 18 8841
BCLllA-7196 - CAACACG CAC AG AAC AC U C 19 8842
BCLllA-7197 - GCAACACGCACAGAACACUC 20 8843
BCLllA-7198 - UGCAACACGCACAGAACACUC 21 8844
BCLllA-7199 - UUGCAACACGCACAGAACACUC 22 8845
BCLllA-7200 - CU U G CAACACG CAC AG A ACAC U C 23 8846
BCLllA-7201 - UCU UGCAACACGCACAGAACACUC 24 8847
BCLllA-7202 - ACGAAGACUCGGUGGCCG 18 8848
BCLllA-7203 - GACGAAGACUCGGUGGCCG 19 8849
BCLllA-7204 - CGACGAAGACUCGGUGGCCG 20 8850
BCLllA-7205 - GCGACGAAGACUCGGUGGCCG 21 8851
BCLllA-7206 - UGCGACGAAGACUCGGUGGCCG 22 8852
BCLllA-7207 - UUGCGACGAAGACUCGGUGGCCG 23 8853
BCLllA-7208 - CUUGCGACGAAGACUCGGUGGCCG 24 8854
BCLllA-7209 - GCCCGGGGAGCUGGACGG 18 8855
BCLllA-7210 - CGCCCGGGGAGCUGGACGG 19 8856
BCLllA-6121 - CCGCCCGGGGAGCUGGACGG 20 8857
BCLllA-7211 - ACCGCCCGGGGAGCUGGACGG 21 8858
BCLllA-7212 - CACCGCCCGGGGAGCUGGACGG 22 8859 BCLllA-7213 - ACACCGCCCGGGGAGCUGGACGG 23 8860
BCLllA-7214 - CACACCGCCCGGGGAGCUGGACGG 24 8861
BCLllA-7215 - GCCGCGGCUGCUCCCCGG 18 8862
BCLllA-7216 - GGCCGCGGCUGCUCCCCGG 19 8863
BCLllA-7217 - UGGCCGCGGCUGCUCCCCGG 20 8864
BCLllA-7218 - AUGGCCGCGGCUGCUCCCCGG 21 8865
BCLllA-7219 - AAUGGCCGCGGCUGCUCCCCGG 22 8866
BCLllA-7220 - UAAUGGCCGCGGCUGCUCCCCGG 23 8867
BCLllA-7221 - UUAAUGGCCGCGGCUGCUCCCCGG 24 8868
BCLllA-7222 - UUUGACAGGGUGCUGCGG 18 8869
BCLllA-7223 - CUUUGACAGGGUGCUGCGG 19 8870
BCLllA-7224 - CCUUUGACAGGGUGCUGCGG 20 8871
BCLllA-7225 - GCCUUUGACAGGGUGCUGCGG 21 8872
BCLllA-7226 - UGCCUUUGACAGGGUGCUGCGG 22 8873
BCLllA-7227 - GUGCCUUUGACAGGGUGCUGCGG 23 8874
BCLllA-7228 - AGUGCCUUUGACAGGGUGCUGCGG 24 8875
BCLllA-7229 - AUUUGAAGCCCCCAGGGG 18 8876
BCLllA-7230 - AAUUUGAAGCCCCCAGGGG 19 8877
BCLllA-6140 - AAAUUUGAAGCCCCCAGGGG 20 8878
BCLllA-7231 - AAAAUUUGAAGCCCCCAGGGG 21 8879
BCLllA-7232 - GAAAAUUUGAAGCCCCCAGGGG 22 8880
BCLllA-7233 - AGAAAAUUUGAAGCCCCCAGGGG 23 8881
BCLllA-7234 - GAGAAAAUUUGAAGCCCCCAGGGG 24 8882
BCLllA-7235 - UCCCUUCAGGACUAGGUG 18 8883
BCLllA-7236 - AUCCCUUCAGGACUAGGUG 19 8884
BCLllA-7237 - UAUCCCUUCAGGACUAGGUG 20 8885
BCLllA-7238 - GUAUCCCUUCAGGACUAGGUG 21 8886
BCLllA-7239 - GGUAUCCCUUCAGGACUAGGUG 22 8887
BCLllA-7240 - UGGUAUCCCUUCAGGACUAGGUG 23 8888
BCLllA-7241 - UUGGUAUCCCUUCAGGACUAGGUG 24 8889
BCLllA-7242 - CG G U C A AG U C C A AG U C A U 18 8890
BCLllA-7243 - CCGGUCAAGUCCAAGUCAU 19 8891
BCLllA-7244 - CCCGGUCAAGUCCAAGUCAU 20 8892
BCLllA-7245 - CCCCGGUCAAGUCCAAGUCAU 21 8893
BCLllA-7246 - CCCCCGGUCAAGUCCAAGUCAU 22 8894
BCLllA-7247 - GCCCCCGGUCAAGUCCAAGUCAU 23 8895
BCLllA-7248 - AGCCCCCGG U CAAG U CCAAG U CAU 24 8896
BCLllA-7249 - UAACCCCUUUAACCUGCU 18 8897
BCLllA-7250 - AUAACCCCUUUAACCUGCU 19 8898
BCLllA-7251 - AAUAACCCCUUUAACCUGCU 20 8899
BCLllA-7252 - CAAUAACCCCUUUAACCUGCU 21 8900
BCLllA-7253 - ACAAUAACCCCUUUAACCUGCU 22 8901 BCLllA-7254 - GACAAUAACCCCUUUAACCUGCU 23 8902
BCLllA-7255 - AGACAAUAACCCCUU UAACCUGCU 24 8903
BCLllA-7256 - ACAGAACACUCAUGGAUU 18 8904
BCLllA-7257 - CACAGAACACUCAUGGAUU 19 8905
BCLllA-7258 - GCACAGAACACUCAUGGAUU 20 8906
BCLllA-7259 - CGCACAGAACACUCAUGGAUU 21 8907
BCLllA-7260 - ACGCACAGAACACUCAUGGAUU 22 8908
BCLllA-7261 - CACGCACAGAACACUCAUGGAUU 23 8909
BCLllA-7262 - ACACGCACAGAACACUCAUGGAUU 24 8910
BCLllA-7263 - GCAGACGCAGCGACACU U 18 8911
BCLllA-7264 - GGCAGACGCAGCGACACUU 19 8912
BCLllA-7265 - GGGCAGACGCAGCGACACUU 20 8913
BCLllA-7266 - AGGGCAGACGCAGCGACACUU 21 8914
BCLllA-7267 - GAGGGCAGACGCAGCGACACUU 22 8915
BCLllA-7268 - AGAGGGCAGACGCAGCGACACUU 23 8916
BCLllA-7269 - AAGAGGGCAGACGCAGCGACACUU 24 8917
BCLllA-7270 - CAAGAUGUGUGGCAGU UU 18 8918
BCLllA-7271 - UCAAGAUGUGUGGCAGUUU 19 8919
BCLllA-7272 - CUCAAGAUGUGUGGCAGUUU 20 8920
BCLllA-7273 - GCUCAAGAUGUGUGGCAGUUU 21 8921
BCLllA-7274 - AGCUCAAGAUGUGUGGCAGUUU 22 8922
BCLllA-7275 - GAGCUCAAGAUGUGUGGCAGUUU 23 8923
BCLllA-7276 - AGAGCUCAAGAUGUGUGGCAGUUU 24 8924
Table 16E provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16E
Figure imgf000342_0001
BCLllA-7280 + AUGUCUCGGUGGUGGACUAAA 21 8928
BCLllA-7281 + GAUGUCUCGGUGGUGGACUAAA 22 8929
BCLllA-7282 + UGAUGUCUCGGUGGUGGACUAAA 23 8930
BCLllA-7283 + GUGAUGUCUCGGUGGUGGACUAAA 24 8931
BCLllA-7284 + GU UCUGUGCGUGUUGCAA 18 8932
BCLllA-7285 + UGUUCUGUGCGUGUUGCAA 19 8933
BCLllA-7286 + GUGUUCUGUGCGUGU UGCAA 20 8934
BCLllA-7287 + AGUGUUCUGUGCGUGUUGCAA 21 8935
BCLllA-7288 + GAGUGUUCUGUGCGUGUUGCAA 22 8936
BCLllA-7289 + UGAGUGUUCUGUGCGUGUUGCAA 23 8937
BCLllA-7290 + AUGAGUGUUCUGUGCGUGUUGCAA 24 8938
BCLllA-7291 + UCUGGGUACUACGCCGAA 18 8939
BCLllA-7292 + CUCUGGGUACUACGCCGAA 19 8940
BCLllA-5883 + UCUCUGGGUACUACGCCGAA 20 8941
BCLllA-7293 + CUCUCUGGGUACUACGCCGAA 21 8942
BCLllA-7294 + GCUCUCUGGGUACUACGCCGAA 22 8943
BCLllA-7295 + AGCUCUCUGGGUACUACGCCGAA 23 8944
BCLllA-7296 + GAGCUCUCUGGGUACUACGCCGAA 24 8945
BCLllA-7297 + UCGGUGGUGGACUAAACA 18 8946
BCLllA-7298 + CUCGGUGGUGGACUAAACA 19 8947
BCLllA-5892 + UCUCGGUGGUGGACUAAACA 20 8948
BCLllA-7299 + GUCUCGGUGGUGGACUAAACA 21 8949
BCLllA-7300 + UGUCUCGGUGGUGGACUAAACA 22 8950
BCLllA-7301 + AUGUCUCGGUGGUGGACUAAA CA 23 8951
BCLllA-7302 + GAUGUCUCGGUGGUGGACUAAACA 24 8952
BCLllA-7303 + AG AAAG AGG U UGG AG ACA 18 8953
BCLllA-7304 + UAGAAAGAGGUUGGAGACA 19 8954
BCLllA-7305 + CU AG AAAG AGG U UGG AG ACA 20 8955
BCLllA-7306 + CCUAGAAAGAGGUUGGAGACA 21 8956
BCLllA-7307 + ACCUAGAAAGAGGUUGGAGACA 22 8957
BCLllA-7308 + AACCUAGAAAGAGGUUGGAGACA 23 8958
BCLllA-7309 + GAACCUAGAAAGAGGUUGGAGACA 24 8959
BCLllA-7310 + UCUGCAAUAUGAAUCCCA 18 8960
BCLllA-7311 + GUCUGCAAUAUGAAUCCCA 19 8961
BCLllA-5899 + UGUCUGCAAUAUGAAUCCCA 20 8962
BCLllA-7312 + UUGUCUGCAAUAUGAAUCCCA 21 8963
BCLllA-7313 + AUUGUCUGCAAUAUGAAUCCCA 22 8964
BCLllA-7314 + UAUUGUCUGCAAUAUGAAUCCCA 23 8965
BCLllA-7315 + U UAUUGUCUGCAAUAUGAAUCCCA 24 8966
BCLllA-7316 + CCUCGCUGAAGUGCUGCA 18 8967
BCLllA-7317 + GCCUCGCUGAAGUGCUGCA 19 8968
BCLllA-5909 + GGCCUCGCUGAAGUGCUGCA 20 8969 BCLllA-7318 + AGGCCUCGCUGAAGUGCUGCA 21 8970
BCLllA-7319 + AAGGCCUCGCUGAAGUGCUGCA 22 8971
BCLllA-7320 + GAAGGCCUCGCUGAAGUGCUGCA 23 8972
BCLllA-7321 + GGAAGGCCUCGCUGAAGUGCUGCA 24 8973
BCLllA-7322 + GAGGAGGGGCGGAUUGCA 18 8974
BCLllA-7323 + GGAGGAGGGGCGGAUUGCA 19 8975
BCLllA-7324 + GGGAGGAGGGGCGGAUUGCA 20 8976
BCLllA-7325 + AGGGAGGAGGGGCGGAUUGCA 21 8977
BCLllA-7326 + GAGGGAGGAGGGGCGGAUUGCA 22 8978
BCLllA-7327 + GGAGGGAGGAGGGGCGGAUUGCA 23 8979
BCLllA-7328 + GGGAGGGAGGAGGGGCGGAUUGCA 24 8980
BCLllA-7329 + GUUGCAGUAACCUUUGCA 18 8981
BCLllA-7330 + GGUUGCAGUAACCUUUGCA 19 8982
BCLllA-7331 + UGGUUGCAGUAACCUU UGCA 20 8983
BCLllA-7332 + AUGGUUGCAGUAACCU UUGCA 21 8984
BCLllA-7333 + AAUGGUUGCAGUAACCUUUGCA 22 8985
BCLllA-7334 + GAAUGGUUGCAGUAACCUUUGCA 23 8986
BCLllA-7335 + GGAAUGGUUGCAGUAACCUUUGCA 24 8987
BCLllA-7336 + GCU UAGAGAAGGGGCUCA 18 8988
BCLllA-7337 + CGCUUAGAGAAGGGGCUCA 19 8989
BCLllA-7338 + GCGCUUAGAGAAGGGGCUCA 20 8990
BCLllA-7339 + UGCGCUUAGAGAAGGGGCUCA 21 8991
BCLllA-7340 + AUGCGCUUAGAGAAGGGGCUCA 22 8992
BCLllA-7341 + GAUGCGCUUAGAGAAGGGGCUCA 23 8993
BCLllA-7342 + UGAUGCGCUUAGAGAAGGGGCUCA 24 8994
BCLllA-7343 + CGUCGGACUUGACCGUCA 18 8995
BCLllA-7344 + UCGUCGGACUUGACCGUCA 19 8996
BCLllA-5912 + GUCGUCGGACUUGACCGUCA 20 8997
BCLllA-7345 + CGUCGUCGGACUUGACCGUCA 21 8998
BCLllA-7346 + CCGUCGUCGGACU UGACCGUCA 22 8999
BCLllA-7347 + ACCGUCGUCGGACUUGACCGUCA 23 9000
BCLllA-7348 + GACCGUCGUCGGACUUGACCGUCA 24 9001
BCLllA-7349 + UACCAACCCGCGGGGUCA 18 9002
BCLllA-7350 + AUACCAACCCGCGGGGUCA 19 9003
BCLllA-5913 + GAUACCAACCCGCGGGGUCA 20 9004
BCLllA-7351 + GGAUACCAACCCGCGGGGUCA 21 9005
BCLllA-7352 + GGGAUACCAACCCGCGGGGUCA 22 9006
BCLllA-7353 + AGGGAUACCAACCCGCGGGGUCA 23 9007
BCLllA-7354 + AAGGGAUACCAACCCGCGGGGUCA 24 9008
BCLllA-7355 + GCU UGAUGCGCUUAGAGA 18 9009
BCLllA-7356 + AGCUUGAUGCGCUUAGAGA 19 9010
BCLllA-5917 + GAGCUUGAUGCGCUUAGAGA 20 9011 BCLllA-7357 + CGAGCUUGAUGCGCUUAGAGA 21 9012
BCLllA-7358 + UCGAGCUUGAUGCGCU UAGAGA 22 9013
BCLllA-7359 + CUCGAGCU UGAUGCGCUUAGAGA 23 9014
BCLllA-7360 + UCUCGAGCUUGAUGCGCUUAGAGA 24 9015
BCLllA-7361 + CUAGAAAGAGGUUGGAGA 18 9016
BCLllA-7362 + CCUAGAAAGAGGUUGGAGA 19 9017
BCLllA-7363 + ACCUAGAAAGAGGUUGGAGA 20 9018
BCLllA-7364 + AACCUAGAAAGAGGUUGGAGA 21 9019
BCLllA-7365 + GAACCUAGAAAGAGGUUGGAGA 22 9020
BCLllA-7366 + AGAACCUAGAAAGAGGUUGGAGA 23 9021
BCLllA-7367 + AAGAACCUAGAAAGAGGUUGGAGA 24 9022
BCLllA-7368 + GUGUGUGAAGAACCUAGA 18 9023
BCLllA-7369 + GGUGUGUGAAGAACCUAGA 19 9024
BCLllA-7370 + GGGUGUGUGAAGAACCUAGA 20 9025
BCLllA-7371 + GGGGUGUGUGAAGAACCUAGA 21 9026
BCLllA-7372 + GGGGGUGUGUGAAGAACCUAGA 22 9027
BCLllA-7373 + UGGGGGUGUGUGAAGAACCUAGA 23 9028
BCLllA-7374 + AUGGGGGUGUGUGAAGAACCUAGA 24 9029
BCLllA-7375 + CUCUGGGUACUACGCCGA 18 9030
BCLllA-7376 + UCUCUGGGUACUACGCCGA 19 9031
BCLllA-7377 + CUCUCUGGGUACUACGCCGA 20 9032
BCLllA-7378 + GCUCUCUGGGUACUACGCCGA 21 9033
BCLllA-7379 + AGCUCUCUGGGUACUACGCCGA 22 9034
BCLllA-7380 + GAGCUCUCUGGGUACUACGCCGA 23 9035
BCLllA-7381 + UGAGCUCUCUGGGUACUACGCCGA 24 9036
BCLllA-7382 + GAGGUUGGAGACAGAGGA 18 9037
BCLllA-7383 + AGAGGUUGGAGACAGAGGA 19 9038
BCLllA-5925 + AAGAGGUUGGAGACAGAGGA 20 9039
BCLllA-7384 + AAAGAGGUUGGAGACAGAGGA 21 9040
BCLllA-7385 + GAAAGAGGUUGGAGACAGAGGA 22 9041
BCLllA-7386 + AGAAAGAGGUUGGAGACAGAGGA 23 9042
BCLllA-7387 + UAGAAAGAGGUUGGAGACAGAGGA 24 9043
BCLllA-7388 + GGGGCGGAUUGCAGAGGA 18 9044
BCLllA-7389 + AGGGGCGGAUUGCAGAGGA 19 9045
BCLllA-5926 + GAGGGGCGGAUUGCAGAGGA 20 9046
BCLllA-7390 + GGAGGGGCGGAUUGCAGAGGA 21 9047
BCLllA-7391 + AGGAGGGGCGGAUUGCAGAGGA 22 9048
BCLllA-7392 + GAGGAGGGGCGGAUUGCAGAGGA 23 9049
BCLllA-7393 + GGAGGAGGGGCGGAUUGCAGAGGA 24 9050
BCLllA-7394 + CGGAUUGCAGAGGAGGGA 18 9051
BCLllA-7395 + GCGGAUUGCAGAGGAGGGA 19 9052
BCLllA-5930 + GGCGGAUUGCAGAGGAGGGA 20 9053 BCLllA-7396 + GGGCGGAUUGCAGAGGAGGGA 21 9054
BCLllA-7397 + GGGGCGGAUUGCAGAGGAGGGA 22 9055
BCLllA-7398 + AGGGGCGGAUUGCAGAGGAGGGA 23 9056
BCLllA-7399 + GAGGGGCGGAUUGCAGAGGAGGGA 24 9057
BCLllA-7400 + CUUGACCGGGGGCUGGGA 18 9058
BCLllA-7401 + ACUUGACCGGGGGCUGGGA 19 9059
BCLllA-5931 + GACUUGACCGGGGGCUGGGA 20 9060
BCLllA-7402 + GGACUUGACCGGGGGCUGGGA 21 9061
BCLllA-7403 + UGGACUUGACCGGGGGCUGGGA 22 9062
BCLllA-7404 + U UGGACUUGACCGGGGGCUGGGA 23 9063
BCLllA-7405 + CUUGGACUUGACCGGGGGCUGGGA 24 9064
BCLllA-7406 + CGCAUGACUUGGACUUGA 18 9065
BCLllA-7407 + UCGCAUGACUUGGACUUGA 19 9066
BCLllA-7408 + CUCGCAUGACUUGGACUUGA 20 9067
BCLllA-7409 + ACUCGCAUGACUUGGACUUGA 21 9068
BCLllA-7410 + AACUCGCAUGACUUGGACUUGA 22 9069
BCLllA-7411 + GAACUCGCAUGACUUGGACUUGA 23 9070
BCLllA-7412 + AGAACUCGCAUGACUUGGACUUGA 24 9071
BCLllA-7413 + GGGCCCGGACCACUAAUA 18 9072
BCLllA-7414 + CGGGCCCGGACCACUAAUA 19 9073
BCLllA-5940 + CCGGGCCCGGACCACUAAUA 20 9074
BCLllA-7415 + CCCGGGCCCGGACCACUAAUA 21 9075
BCLllA-7416 + GCCCGGGCCCGGACCACUAAUA 22 9076
BCLllA-7417 + UGCCCGGGCCCGGACCACUAAUA 23 9077
BCLllA-7418 + CUGCCCGGGCCCGGACCACUAAUA 24 9078
BCLllA-7419 + AGCUCUCUAAGUCUCCUA 18 9079
BCLllA-7420 + CAGCUCUCUAAGUCUCCUA 19 9080
BCLllA-7421 + CCAGCUCUCUAAGUCUCCUA 20 9081
BCLllA-7422 + GCCAGCUCUCUAAGUCUCCUA 21 9082
BCLllA-7423 + UGCCAGCUCUCUAAGUCUCCUA 22 9083
BCLllA-7424 + CUGCCAGCUCUCUAAGUCUCCUA 23 9084
BCLllA-7425 + CCUGCCAGCUCUCUAAGUCUCCUA 24 9085
BCLllA-7426 + CUGGAGUCUCCGAAGCUA 18 9086
BCLllA-7427 + UCUGGAGUCUCCGAAGCUA 19 9087
BCLllA-5943 + GUCUGGAGUCUCCGAAGCUA 20 9088
BCLllA-7428 + UGUCUGGAGUCUCCGAAGCUA 21 9089
BCLllA-7429 + U UGUCUGGAGUCUCCGAAGCUA 22 9090
BCLllA-7430 + AUUGUCUGGAGUCUCCGAAGCUA 23 9091
BCLllA-7431 + GAUUGUCUGGAGUCUCCGAAGCUA 24 9092
BCLllA-7432 + UCGAGCUUGAUGCGCUUA 18 9093
BCLllA-7433 + CUCGAGCU UGAUGCGCU UA 19 9094
BCLllA-7434 + UCUCGAGCUUGAUGCGCUUA 20 9095 BCLllA-7435 + UUCUCGAGCUUGAUGCGCUUA 21 9096
BCLllA-7436 + CUUCUCGAGCUUGAUGCGCUUA 22 9097
BCLllA-7437 + CCUUCUCGAGCUUGAUGCGCUUA 23 9098
BCLllA-7438 + UCCUUCUCGAGCU UGAUGCGCUUA 24 9099
BCLllA-7439 + GGUAUUCUUAGCAGGUUA 18 9100
BCLllA-7440 + UGGUAUUCUUAGCAGGUUA 19 9101
BCLllA-7441 + CUGGUAUUCUUAGCAGGUUA 20 9102
BCLllA-7442 + CCUGGUAUUCUUAGCAGGUUA 21 9103
BCLllA-7443 + UCCUGGUAU UCUUAGCAGGUUA 22 9104
BCLllA-7444 + AUCCUGGUAUUCUUAGCAGGUUA 23 9105
BCLllA-7445 + GAUCCUGGUAUUCUUAGCAGGUUA 24 9106
BCLllA-7446 + CUCGGUGGUGGACUAAAC 18 9107
BCLllA-7447 + UCUCGGUGGUGGACUAAAC 19 9108
BCLllA-5947 + GUCUCGGUGGUGGACUAAAC 20 9109
BCLllA-7448 + UGUCUCGGUGGUGGACUAAAC 21 9110
BCLllA-7449 + AUGUCUCGGUGGUGGACUAAAC 22 9111
BCLllA-7450 + GAUGUCUCGGUGGUGGACUAAAC 23 9112
BCLllA-7451 + UGAUGUCUCGGUGGUGGACUAAAC 24 9113
BCLllA-7452 + UCCGAGGAGUGCUCCGAC 18 9114
BCLllA-7453 + CUCCGAGGAGUGCUCCGAC 19 9115
BCLllA-7454 + UCUCCGAGGAGUGCUCCGAC 20 9116
BCLllA-7455 + U UCUCCGAGGAGUGCUCCGAC 21 9117
BCLllA-7456 + GU UCUCCGAGGAGUGCUCCGAC 22 9118
BCLllA-7457 + CGU UCUCCGAGGAGUGCUCCGAC 23 9119
BCLllA-7458 + CCGUUCUCCGAGGAGUGCUCCGAC 24 9120
BCLllA-7459 + AACUUGGCCACCACGGAC 18 9121
BCLllA-7460 + GAACUUGGCCACCACGGAC 19 9122
BCLllA-7461 + UGAACUUGGCCACCACGGAC 20 9123
BCLllA-7462 + U UGAACUUGGCCACCACGGAC 21 9124
BCLllA-7463 + CUUGAACUUGGCCACCACGGAC 22 9125
BCLllA-7464 + UCU UGAACUUGGCCACCACGGAC 23 9126
BCLllA-7465 + CUCU UGAACUUGGCCACCACGGAC 24 9127
BCLllA-7466 + CCGCAGAACUCGCAUGAC 18 9128
BCLllA-7467 + GCCGCAGAACUCGCAUGAC 19 9129
BCLllA-7468 + UGCCGCAGAACUCGCAUGAC 20 9130
BCLllA-7469 + U UGCCGCAGAACUCGCAUGAC 21 9131
BCLllA-7470 + CUUGCCGCAGAACUCGCAUGAC 22 9132
BCLllA-7471 + UCU UGCCGCAGAACUCGCAUGAC 23 9133
BCLllA-7472 + GUCUUGCCGCAGAACUCGCAUGAC 24 9134
BCLllA-7473 + GCAUGACUUGGACUUGAC 18 9135
BCLllA-7474 + CGCAUGACUUGGACUUGAC 19 9136
BCLllA-5957 + UCGCAUGACU UGGACU UGAC 20 9137 BCLllA-7475 + CUCGCAUGACUUGGACUUGAC 21 9138
BCLllA-7476 + ACUCGCAUGACUUGGACUUGAC 22 9139
BCLllA-7477 + AACUCGCAUGACU UGGACUUGAC 23 9140
BCLllA-7478 + GAACUCGCAUGACUUGGACUUGAC 24 9141
BCLllA-7479 + GGGGGUGUGUGAAGAACC 18 9142
BCLllA-7480 + UGGGGGUGUGUGAAGAACC 19 9143
BCLllA-7481 + AUGGGGGUGUGUGAAGAACC 20 9144
BCLllA-7482 + AAUGGGGGUGUGUGAAGAACC 21 9145
BCLllA-7483 + GAAUGGGGGUGUGUGAAGAACC 22 9146
BCLllA-7484 + CGAAUGGGGGUGUGUGAAGAACC 23 9147
BCLllA-7485 + CCGAAUGGGGGUGUGUGAAGAACC 24 9148
BCLllA-7486 + CUCUUGAACU UGGCCACC 18 9149
BCLllA-7487 + GCUCU UGAACUUGGCCACC 19 9150
BCLllA-7488 + CGCUCU UGAACUUGGCCACC 20 9151
BCLllA-7489 + UCGCUCUUGAACUUGGCCACC 21 9152
BCLllA-7490 + CUCGCUCU UGAACUUGGCCACC 22 9153
BCLllA-7491 + UCUCGCUCUUGAACUUGGCCACC 23 9154
BCLllA-7492 + U UCUCGCUCUUGAACUUGGCCACC 24 9155
BCLllA-7493 + CAUGACUUGGACUUGACC 18 9156
BCLllA-7494 + GCAUGACUUGGACUUGACC 19 9157
BCLllA-5965 + CGCAUGACUUGGACUUGACC 20 9158
BCLllA-7495 + UCGCAUGACUUGGACUUGACC 21 9159
BCLllA-7496 + CUCGCAUGACUUGGACU UGACC 22 9160
BCLllA-7497 + ACUCGCAUGACUUGGACUUGACC 23 9161
BCLllA-7498 + AACUCGCAUGACU UGGACUUGACC 24 9162
BCLllA-7499 + CUGAAGGGAUACCAACCC 18 9163
BCLllA-7500 + CCUGAAGGGAUACCAACCC 19 9164
BCLllA-7501 + UCCUGAAGGGAUACCAACCC 20 9165
BCLllA-7502 + GUCCUGAAGGGAUACCAACCC 21 9166
BCLllA-7503 + AGUCCUGAAGGGAUACCAACCC 22 9167
BCLllA-7504 + UAGUCCUGAAGGGAUACCAACCC 23 9168
BCLllA-7505 + CUAGUCCUGAAGGGAUACCAACCC 24 9169
BCLllA-7506 + CGCCCACGACCGCGCCCC 18 9170
BCLllA-7507 + ACGCCCACGACCGCGCCCC 19 9171
BCLllA-3830 + CACGCCCACGACCGCGCCCC 20 9172
BCLllA-7508 + CCACGCCCACGACCGCGCCCC 21 9173
BCLllA-7509 + CCCACGCCCACGACCGCGCCCC 22 9174
BCLllA-7510 + GCCCACGCCCACGACCGCGCCCC 23 9175
BCLllA-7511 + CGCCCACGCCCACGACCGCGCCCC 24 9176
BCLllA-7512 + GCUUUUUGGACAGGCCCC 18 9177
BCLllA-7513 + AGCUUUUUGGACAGGCCCC 19 9178
BCLllA-7514 + CAGCUUUUUGGACAGGCCCC 20 9179 BCLllA-7515 + GCAGCU UUUUGGACAGGCCCC 21 9180
BCLllA-7516 + AGCAGCUUUUUGGACAGGCCCC 22 9181
BCLllA-7517 + CAGCAGCUUUUUGGACAGGCCCC 23 9182
BCLllA-7518 + GCAGCAGCUUU UUGGACAGGCCCC 24 9183
BCLllA-7519 + CCCGAGGCCGACUCGCCC 18 9184
BCLllA-7520 + CCCCGAGGCCGACUCGCCC 19 9185
BCLllA-5977 + CCCCCGAGGCCGACUCGCCC 20 9186
BCLllA-7521 + CCCCCCGAGGCCGACUCGCCC 21 9187
BCLllA-7522 + GCCCCCCGAGGCCGACUCGCCC 22 9188
BCLllA-7523 + GGCCCCCCGAGGCCGACUCGCCC 23 9189
BCLllA-7524 + AGGCCCCCCGAGGCCGACUCGCCC 24 9190
BCLllA-7525 + GUCUGCAAUAUGAAUCCC 18 9191
BCLllA-7526 + UGUCUGCAAUAUGAAUCCC 19 9192
BCLllA-7527 + U UGUCUGCAAUAUGAAUCCC 20 9193
BCLllA-7528 + AUUGUCUGCAAUAUGAAUCCC 21 9194
BCLllA-7529 + UAUUGUCUGCAAUAUGAAUCCC 22 9195
BCLllA-7530 + UUAUUGUCUGCAAUAUGAAUCCC 23 9196
BCLllA-7531 + GU UAUUGUCUGCAAUAUGAAUCCC 24 9197
BCLllA-7532 + UUCCCGUGCCGCUGCGCC 18 9198
BCLllA-7533 + CUUCCCGUGCCGCUGCGCC 19 9199
BCLllA-7534 + ACUUCCCGUGCCGCUGCGCC 20 9200
BCLllA-7535 + CACUUCCCGUGCCGCUGCGCC 21 9201
BCLllA-7536 + CCACUUCCCGUGCCGCUGCGCC 22 9202
BCLllA-7537 + UCCACUUCCCGUGCCGCUGCGCC 23 9203
BCLllA-7538 + CUCCACUUCCCGUGCCGCUGCGCC 24 9204
BCLllA-7539 + CCCCGAGGCCGACUCGCC 18 9205
BCLllA-7540 + CCCCCGAGGCCGACUCGCC 19 9206
BCLllA-5989 + CCCCCCGAGGCCGACUCGCC 20 9207
BCLllA-7541 + GCCCCCCGAGGCCGACUCGCC 21 9208
BCLllA-7542 + GGCCCCCCGAGGCCGACUCGCC 22 9209
BCLllA-7543 + AGGCCCCCCGAGGCCGACUCGCC 23 9210
BCLllA-7544 + CAGGCCCCCCGAGGCCGACUCGCC 24 9211
BCLllA-7545 + GCGCUUAUGCUUCUCGCC 18 9212
BCLllA-7546 + CGCGCUUAUGCUUCUCGCC 19 9213
BCLllA-7547 + CCGCGCUUAUGCU UCUCGCC 20 9214
BCLllA-7548 + GCCGCGCUUAUGCUUCUCGCC 21 9215
BCLllA-7549 + GGCCGCGCUUAUGCUUCUCGCC 22 9216
BCLllA-7550 + UGGCCGCGCUUAUGCUUCUCGCC 23 9217
BCLllA-7551 + GUGGCCGCGCUUAUGCUUCUCGCC 24 9218
BCLllA-7552 + GGGAGGGGGGGCGUCGCC 18 9219
BCLllA-7553 + AGGGAGGGGGGGCGUCGCC 19 9220
BCLllA-5990 + GAGGGAGGGGGGGCGUCGCC 20 9221 BCLllA-7554 + GGAGGGAGGGGGGGCGUCGCC 21 9222
BCLllA-7555 + AGGAGGGAGGGGGGGCGUCGCC 22 9223
BCLllA-7556 + GAGGAGGGAGGGGGGGCGUCGCC 23 9224
BCLllA-7557 + AGAGGAGGGAGGGGGGGCGUCGCC 24 9225
BCLllA-7558 + CAUAGGGCUGGGCCGGCC 18 9226
BCLllA-7559 + GCAUAGGGCUGGGCCGGCC 19 9227
BCLllA-5991 + UGCAUAGGGCUGGGCCGGCC 20 9228
BCLllA-7560 + UUGCAUAGGGCUGGGCCGGCC 21 9229
BCLllA-7561 + UUUGCAUAGGGCUGGGCCGGCC 22 9230
BCLllA-7562 + CUUUGCAUAGGGCUGGGCCGGCC 23 9231
BCLllA-7563 + CCUU UGCAUAGGGCUGGGCCGGCC 24 9232
BCLllA-7564 + GUGUUGGGCAUCGCGGCC 18 9233
BCLllA-7565 + CGUGUUGGGCAUCGCGGCC 19 9234
BCLllA-5993 + CCGUGUUGGGCAUCGCGGCC 20 9235
BCLllA-7566 + UCCGUGUUGGGCAUCGCGGCC 21 9236
BCLllA-7567 + CUCCGUGU UGGGCAUCGCGGCC 22 9237
BCLllA-7568 + UCUCCGUGUUGGGCAUCGCGGCC 23 9238
BCLllA-7569 + U UCUCCGUGUUGGGCAUCGCGGCC 24 9239
BCLllA-7570 + AGGGAUCUUUGAGCUGCC 18 9240
BCLllA-7571 + AAGGGAUCUUUGAGCUGCC 19 9241
BCLllA-6000 + GAAGGGAUCUUUGAGCUGCC 20 9242
BCLllA-7572 + GGAAGGGAUCUUUGAGCUGCC 21 9243
BCLllA-7573 + AGGAAGGGAUCUUUGAGCUGCC 22 9244
BCLllA-7574 + AAGGAAGGGAUCUUUGAGCUGCC 23 9245
BCLllA-7575 + UAAGGAAGGGAUCUUUGAGCUGCC 24 9246
BCLllA-7576 + AUCCCUCCGUCCAGCUCC 18 9247
BCLllA-7577 + GAUCCCUCCGUCCAGCUCC 19 9248
BCLllA-7578 + AGAUCCCUCCGUCCAGCUCC 20 9249
BCLllA-7579 + GAGAUCCCUCCGUCCAGCUCC 21 9250
BCLllA-7580 + CGAGAUCCCUCCGUCCAGCUCC 22 9251
BCLllA-7581 + CCGAGAUCCCUCCGUCCAGCUCC 23 9252
BCLllA-7582 + CCCGAGAUCCCUCCGUCCAGCUCC 24 9253
BCLllA-7583 + CCAGCUCUCUAAGUCUCC 18 9254
BCLllA-7584 + GCCAGCUCUCUAAGUCUCC 19 9255
BCLllA-7585 + UGCCAGCUCUCUAAGUCUCC 20 9256
BCLllA-7586 + CUGCCAGCUCUCUAAGUCUCC 21 9257
BCLllA-7587 + CCUGCCAGCUCUCUAAGUCUCC 22 9258
BCLllA-7588 + CCCUGCCAGCUCUCUAAGUCUCC 23 9259
BCLllA-7589 + UCCCUGCCAGCUCUCUAAGUCUCC 24 9260
BCLllA-7590 + CGCAAACUCCCGUUCUCC 18 9261
BCLllA-7591 + GCGCAAACUCCCGUUCUCC 19 9262
BCLllA-7592 + AGCGCAAACUCCCGUUCUCC 20 9263 BCLllA-7593 + AAGCGCAAACUCCCGUUCUCC 21 9264
BCLllA-7594 + GAAGCGCAAACUCCCGU UCUCC 22 9265
BCLllA-7595 + AGAAGCGCAAACUCCCGUUCUCC 23 9266
BCLllA-7596 + GAGAAGCGCAAACUCCCGUUCUCC 24 9267
BCLllA-7597 + UCGCUGGUGCCGGGUUCC 18 9268
BCLllA-7598 + GUCGCUGGUGCCGGGUUCC 19 9269
BCLllA-6011 + AGUCGCUGGUGCCGGGUUCC 20 9270
BCLllA-7599 + AAGUCGCUGGUGCCGGGUUCC 21 9271
BCLllA-7600 + CAAGUCGCUGGUGCCGGGUUCC 22 9272
BCLllA-7601 + CCAAGUCGCUGGUGCCGGGUUCC 23 9273
BCLllA-7602 + ACCAAGUCGCUGGUGCCGGGUUCC 24 9274
BCLllA-7603 + GCCGCCUCCAGGCUCAGC 18 9275
BCLllA-7604 + CGCCGCCUCCAGGCUCAGC 19 9276
BCLllA-7605 + GCGCCGCCUCCAGGCUCAGC 20 9277
BCLllA-7606 + CGCGCCGCCUCCAGGCUCAGC 21 9278
BCLllA-7607 + GCGCGCCGCCUCCAGGCUCAGC 22 9279
BCLllA-7608 + GGCGCGCCGCCUCCAGGCUCAGC 23 9280
BCLllA-7609 + UGGCGCGCCGCCUCCAGGCUCAGC 24 9281
BCLllA-7610 + AGAAGGGGCUCAGCGAGC 18 9282
BCLllA-7611 + GAGAAGGGGCUCAGCGAGC 19 9283
BCLllA-6013 + AGAGAAGGGGCUCAGCGAGC 20 9284
BCLllA-7612 + UAGAGAAGGGGCUCAGCGAGC 21 9285
BCLllA-7613 + UUAGAGAAGGGGCUCAGCGAGC 22 9286
BCLllA-7614 + CUUAGAGAAGGGGCUCAGCGAGC 23 9287
BCLllA-7615 + GCUUAGAGAAGGGGCUCAGCGAGC 24 9288
BCLllA-7616 + CCCCCGAGGCCGACUCGC 18 9289
BCLllA-7617 + CCCCCCGAGGCCGACUCGC 19 9290
BCLllA-7618 + GCCCCCCGAGGCCGACUCGC 20 9291
BCLllA-7619 + GGCCCCCCGAGGCCGACUCGC 21 9292
BCLllA-7620 + AGGCCCCCCGAGGCCGACUCGC 22 9293
BCLllA-7621 + CAGGCCCCCCGAGGCCGACUCGC 23 9294
BCLllA-7622 + ACAGGCCCCCCGAGGCCGACUCGC 24 9295
BCLllA-7623 + AGGGAGGGGGGGCGUCGC 18 9296
BCLllA-7624 + GAGGGAGGGGGGGCGUCGC 19 9297
BCLllA-7625 + GGAGGGAGGGGGGGCGUCGC 20 9298
BCLllA-7626 + AGGAGGGAGGGGGGGCGUCGC 21 9299
BCLllA-7627 + GAGGAGGGAGGGGGGGCGUCGC 22 9300
BCLllA-7628 + AGAGGAGGGAGGGGGGGCGUCGC 23 9301
BCLllA-7629 + CAGAGGAGGGAGGGGGGGCGUCGC 24 9302
BCLllA-7630 + AGCGCCCUUCUGCCAGGC 18 9303
BCLllA-7631 + AAGCGCCCU UCUGCCAGGC 19 9304
BCLllA-6027 + AAAGCGCCCUUCUGCCAGGC 20 9305 BCLllA-7632 + GAAAGCGCCCUUCUGCCAGGC 21 9306
BCLllA-7633 + GGAAAGCGCCCU UCUGCCAGGC 22 9307
BCLllA-7634 + UGGAAAGCGCCCUUCUGCCAGGC 23 9308
BCLllA-7635 + GUGGAAAGCGCCCUUCUGCCAGGC 24 9309
BCLllA-7636 + GCAUAGGGCUGGGCCGGC 18 9310
BCLllA-7637 + UGCAUAGGGCUGGGCCGGC 19 9311
BCLllA-7638 + U UGCAUAGGGCUGGGCCGGC 20 9312
BCLllA-7639 + U UUGCAUAGGGCUGGGCCGGC 21 9313
BCLllA-7640 + CUU UGCAUAGGGCUGGGCCGGC 22 9314
BCLllA-7641 + CCUUUGCAUAGGGCUGGGCCGGC 23 9315
BCLllA-7642 + ACCU UUGCAUAGGGCUGGGCCGGC 24 9316
BCLllA-7643 + CGUGUUGGGCAUCGCGGC 18 9317
BCLllA-7644 + CCGUGU UGGGCAUCGCGGC 19 9318
BCLllA-6028 + UCCGUGUUGGGCAUCGCGGC 20 9319
BCLllA-7645 + CUCCGUGUUGGGCAUCGCGGC 21 9320
BCLllA-7646 + UCUCCGUGUUGGGCAUCGCGGC 22 9321
BCLllA-7647 + UUCUCCGUGUUGGGCAUCGCGGC 23 9322
BCLllA-7648 + GU UCUCCGUGUUGGGCAUCGCGGC 24 9323
BCLllA-7649 + AGCUGGGCCUGCCCGGGC 18 9324
BCLllA-7650 + GAGCUGGGCCUGCCCGGGC 19 9325
BCLllA-7651 + UGAGCUGGGCCUGCCCGGGC 20 9326
BCLllA-7652 + UUGAGCUGGGCCUGCCCGGGC 21 9327
BCLllA-7653 + UUUGAGCUGGGCCUGCCCGGGC 22 9328
BCLllA-7654 + UUUUGAGCUGGGCCUGCCCGGGC 23 9329
BCLllA-7655 + CUUUUGAGCUGGGCCUGCCCGGGC 24 9330
BCLllA-7656 + U UGGACUUGACCGGGGGC 18 9331
BCLllA-7657 + CUUGGACUUGACCGGGGGC 19 9332
BCLllA-6032 + ACUUGGACUUGACCGGGGGC 20 9333
BCLllA-7658 + GACUUGGACUUGACCGGGGGC 21 9334
BCLllA-7659 + UGACUUGGACUUGACCGGGGGC 22 9335
BCLllA-7660 + AUGACUUGGACUUGACCGGGGGC 23 9336
BCLllA-7661 + CAUGACUUGGACUUGACCGGGGGC 24 9337
BCLllA-7662 + CCUAGAGAAAUCCAUGGC 18 9338
BCLllA-7663 + UCCUAGAGAAAUCCAUGGC 19 9339
BCLllA-6035 + CUCCUAGAGAAAUCCAUGGC 20 9340
BCLllA-7664 + UCUCCUAGAGAAAUCCAUGGC 21 9341
BCLllA-7665 + GUCUCCUAGAGAAAUCCAUGGC 22 9342
BCLllA-7666 + AGUCUCCUAGAGAAAUCCAUGGC 23 9343
BCLllA-7667 + AAGUCUCCUAGAGAAAUCCAUGGC 24 9344
BCLllA-7668 + AUCCCAUGGAGAGGUGGC 18 9345
BCLllA-7669 + AAUCCCAUGGAGAGGUGGC 19 9346
BCLllA-6038 + GAAUCCCAUGGAGAGGUGGC 20 9347 BCLllA-7670 + UGAAUCCCAUGGAGAGGUGGC 21 9348
BCLllA-7671 + AUGAAUCCCAUGGAGAGGUGGC 22 9349
BCLllA-7672 + UAUGAAUCCCAUGGAGAGGUGGC 23 9350
BCLllA-7673 + AUAUGAAUCCCAUGGAGAGGUGGC 24 9351
BCLllA-7674 + ACUCGGGUGAUGGGUGGC 18 9352
BCLllA-7675 + CACUCGGGUGAUGGGUGGC 19 9353
BCLllA-7676 + GCACUCGGGUGAUGGGUGGC 20 9354
BCLllA-7677 + GGCACUCGGGUGAUGGGUGGC 21 9355
BCLllA-7678 + AGGCACUCGGGUGAUGGGUGGC 22 9356
BCLllA-7679 + AAGGCACUCGGGUGAUGGGUGGC 23 9357
BCLllA-7680 + AAAGGCACUCGGGUGAUGGGUGGC 24 9358
BCLllA-7681 + CUU UUGAGCUGGGCCUGC 18 9359
BCLllA-7682 + UCU UUUGAGCUGGGCCUGC 19 9360
BCLllA-7683 + CUCU UUUGAGCUGGGCCUGC 20 9361
BCLllA-7684 + CCUCUU UUGAGCUGGGCCUGC 21 9362
BCLllA-7685 + CCCUCUUU UGAGCUGGGCCUGC 22 9363
BCLllA-7686 + GCCCUCUU UUGAGCUGGGCCUGC 23 9364
BCLllA-7687 + UGCCCUCUUUUGAGCUGGGCCUGC 24 9365
BCLllA-7688 + AAGGGAUCUUUGAGCUGC 18 9366
BCLllA-7689 + GAAGGGAUCUUUGAGCUGC 19 9367
BCLllA-7690 + GGAAGGGAUCUUUGAGCUGC 20 9368
BCLllA-7691 + AGGAAGGGAUCUUUGAGCUGC 21 9369
BCLllA-7692 + AAGGAAGGGAUCUUUGAGCUGC 22 9370
BCLllA-7693 + UAAGGAAGGGAUCUUUGAGCUGC 23 9371
BCLllA-7694 + CUAAGGAAGGGAUCUU UGAGCUGC 24 9372
BCLllA-7695 + GCCUCGCUGAAGUGCUGC 18 9373
BCLllA-7696 + GGCCUCGCUGAAGUGCUGC 19 9374
BCLllA-7697 + AGGCCUCGCUGAAGUGCUGC 20 9375
BCLllA-7698 + AAGGCCUCGCUGAAGUGCUGC 21 9376
BCLllA-7699 + GAAGGCCUCGCUGAAGUGCUGC 22 9377
BCLllA-7700 + GGAAGGCCUCGCUGAAGUGCUGC 23 9378
BCLllA-7701 + UGGAAGGCCUCGCUGAAGUGCUGC 24 9379
BCLllA-7702 + GUGUUCUGUGCGUGU UGC 18 9380
BCLllA-7703 + AGUGUUCUGUGCGUGUUGC 19 9381
BCLllA-7704 + GAGUGUUCUGUGCGUGUUGC 20 9382
BCLllA-7705 + UGAGUGUUCUGUGCGUGUUGC 21 9383
BCLllA-7706 + AUGAGUGUUCUGUGCGUGUUGC 22 9384
BCLllA-7707 + CAUGAGUGUUCUGUGCGUGUUGC 23 9385
BCLllA-7708 + CCAUGAGUGUUCUGUGCGUGUUGC 24 9386
BCLllA-7709 + CGAAAACUGCCACACAUC 18 9387
BCLllA-7710 + CCGAAAACUGCCACACAUC 19 9388
BCLllA-7711 + UCCGAAAACUGCCACACAUC 20 9389 BCLllA-7712 + AUCCGAAAACUGCCACACAUC 21 9390
BCLllA-7713 + CAUCCGAAAACUGCCACACAUC 22 9391
BCLllA-7714 + CCAUCCGAAAACUGCCACACAUC 23 9392
BCLllA-7715 + UCCAUCCGAAAACUGCCACACAUC 24 9393
BCLllA-7716 + U UGGGGUCGUUCUCGCUC 18 9394
BCLllA-7717 + GUUGGGGUCGUUCUCGCUC 19 9395
BCLllA-7718 + GGUUGGGGUCGUUCUCGCUC 20 9396
BCLllA-7719 + AGGUUGGGGUCGUUCUCGCUC 21 9397
BCLllA-7720 + CAGGUUGGGGUCGUUCUCGCUC 22 9398
BCLllA-7721 + UCAGGUUGGGGUCGUUCUCGCUC 23 9399
BCLllA-7722 + AUCAGGUUGGGGUCGUUCUCGCUC 24 9400
BCLllA-7723 + CUCAGAACUUAAGGGCUC 18 9401
BCLllA-7724 + UCUCAGAACUUAAGGGCUC 19 9402
BCLllA-7725 + UUCUCAGAACUUAAGGGCUC 20 9403
BCLllA-7726 + UUUCUCAGAACU UAAGGGCUC 21 9404
BCLllA-7727 + U UUUCUCAGAACUUAAGGGCUC 22 9405
BCLllA-7728 + AUUUUCUCAGAACUUAAGGGCUC 23 9406
BCLllA-7729 + AAUUUUCUCAGAACU UAAGGGCUC 24 9407
BCLllA-7730 + GACAUUCUGCACCUAGUC 18 9408
BCLllA-7731 + GGACAUUCUGCACCUAGUC 19 9409
BCLllA-7732 + AGGACAUUCUGCACCUAGUC 20 9410
BCLllA-7733 + AAGGACAUUCUGCACCUAGUC 21 9411
BCLllA-7734 + GAAGGACAUUCUGCACCUAGUC 22 9412
BCLllA-7735 + GGAAGGACAUUCUGCACCUAGUC 23 9413
BCLllA-7736 + GGGAAGGACAUUCUGCACCUAGUC 24 9414
BCLllA-7737 + UCGUCGGACUUGACCGUC 18 9415
BCLllA-7738 + GUCGUCGGACUUGACCGUC 19 9416
BCLllA-7739 + CGUCGUCGGACUUGACCGUC 20 9417
BCLllA-7740 + CCGUCGUCGGACUUGACCGUC 21 9418
BCLllA-7741 + ACCGUCGUCGGACUUGACCGUC 22 9419
BCLllA-7742 + GACCGUCGUCGGACUUGACCGUC 23 9420
BCLllA-7743 + AGACCGUCGUCGGACUUGACCGUC 24 9421
BCLllA-7744 + AUACCAACCCGCGGGGUC 18 9422
BCLllA-7745 + GAUACCAACCCGCGGGGUC 19 9423
BCLllA-6052 + GGAUACCAACCCGCGGGGUC 20 9424
BCLllA-7746 + GGGAUACCAACCCGCGGGGUC 21 9425
BCLllA-7747 + AGGGAUACCAACCCGCGGGGUC 22 9426
BCLllA-7748 + AAGGGAUACCAACCCGCGGGGUC 23 9427
BCLllA-7749 + GAAGGGAUACCAACCCGCGGGGUC 24 9428
BCLllA-7750 + GGCAGGUCGAACUCCUUC 18 9429
BCLllA-7751 + GGGCAGGUCGAACUCCU UC 19 9430
BCLllA-7752 + GGGGCAGGUCGAACUCCUUC 20 9431 BCLllA-7753 + GGGGGCAGGUCGAACUCCUUC 21 9432
BCLllA-7754 + CGGGGGCAGGUCGAACUCCUUC 22 9433
BCLllA-7755 + CCGGGGGCAGG UCGAACUCCUUC 23 9434
BCLllA-7756 + GCCGGGGGCAGGUCGAACUCCUUC 24 9435
BCLllA-7757 + GUCGCUGGUGCCGGGU UC 18 9436
BCLllA-7758 + AGUCGCUGGUGCCGGGUUC 19 9437
BCLllA-6058 + AAGUCGCUGGUGCCGGGUUC 20 9438
BCLllA-7759 + CAAGUCGCUGGUGCCGGGUUC 21 9439
BCLllA-7760 + CCAAGUCGCUGGUGCCGGGUUC 22 9440
BCLllA-7761 + ACCAAGUCGCUGGUGCCGGGUUC 23 9441
BCLllA-7762 + CACCAAGUCGCUGGUGCCGGGUUC 24 9442
BCLllA-7763 + CGGUGGUGGACUAAACAG 18 9443
BCLllA-7764 + UCGGUGGUGGACUAAACAG 19 9444
BCLllA-6063 + CUCGGUGGUGGACUAAACAG 20 9445
BCLllA-7765 + UCUCGGUGGUGGACUAAACAG 21 9446
BCLllA-7766 + GUCUCGGUGGUGGACUAAACAG 22 9447
BCLllA-7767 + UGUCUCGGUGGUGGACUAAACAG 23 9448
BCLllA-7768 + AUGUCUCGGUGGUGGACUAAACAG 24 9449
BCLllA-7769 + G AAAG AGG U UGG AG ACAG 18 9450
BCLllA-7770 + AGAAAGAGGUUGGAGACAG 19 9451
BCLllA-6064 + UAGAAAGAGGUUGGAGACAG 20 9452
BCLllA-7771 + CUAGAAAGAGGUUGGAGACAG 21 9453
BCLllA-7772 + CCUAGAAAGAGGUUGGAGACAG 22 9454
BCLllA-7773 + ACCU AGAAAGAGGUUGGAGACAG 23 9455
BCLllA-7774 + AACCUAGAAAGAGGUUGGAGACAG 24 9456
BCLllA-7775 + AGGAGGGGCGGAUUGCAG 18 9457
BCLllA-7776 + GAGGAGGGGCGGAUUGCAG 19 9458
BCLllA-6069 + GGAGGAGGGGCGGAUUGCAG 20 9459
BCLllA-7777 + GGGAGGAGGGGCGGAUUGCAG 21 9460
BCLllA-7778 + AGGGAGGAGGGGCGGAUUGCAG 22 9461
BCLllA-7779 + GAGGGAGGAGGGGCGGAUUGCAG 23 9462
BCLllA-7780 + GGAGGGAGGAGGGGCGGAUUGCAG 24 9463
BCLllA-7781 + AAGAGGUUGGAGACAGAG 18 9464
BCLllA-7782 + AAAG AGG U UGG AG ACAG AG 19 9465
BCLllA-7783 + GAAAGAGGUUGGAGACAGAG 20 9466
BCLllA-7784 + AG AAAG AGG U UGG AG ACAG AG 21 9467
BCLllA-7785 + UAGAAAGAGGUUGGAGACAGAG 22 9468
BCLllA-7786 + CU AG AAAG AGG U UGG AG ACAG AG 23 9469
BCLllA-7787 + CCUAGAAAGAGGUUGGAGACAGAG 24 9470
BCLllA-7788 + GAGGGGCGGAUUGCAGAG 18 9471
BCLllA-7789 + GGAGGGGCGGAUUGCAGAG 19 9472
BCLllA-7790 + AGGAGGGGCGGAUUGCAGAG 20 9473 BCLllA-7791 + GAGGAGGGGCGGAUUGCAGAG 21 9474
BCLllA-7792 + GGAGGAGGGGCGGAUUGCAGAG 22 9475
BCLllA-7793 + GGGAGGAGGGGCGGAUUGCAGAG 23 9476
BCLllA-7794 + AGGGAGGAGGGGCGGAUUGCAGAG 24 9477
BCLllA-7795 + AGCUUGAUGCGCUUAGAG 18 9478
BCLllA-7796 + GAGCUUGAUGCGCUUAGAG 19 9479
BCLllA-7797 + CGAGCU UGAUGCGCUUAGAG 20 9480
BCLllA-7798 + UCGAGCUUGAUGCGCUUAGAG 21 9481
BCLllA-7799 + CUCGAGCU UGAUGCGCU UAGAG 22 9482
BCLllA-7800 + UCUCGAGCUUGAUGCGCUUAGAG 23 9483
BCLllA-7801 + UUCUCGAGCUUGAUGCGCUUAGAG 24 9484
BCLllA-7802 + GAGAAGGGGCUCAGCGAG 18 9485
BCLllA-7803 + AGAGAAGGGGCUCAGCGAG 19 9486
BCLllA-7804 + UAGAGAAGGGGCUCAGCGAG 20 9487
BCLllA-7805 + U UAGAGAAGGGGCUCAGCGAG 21 9488
BCLllA-7806 + CUU AGAGAAGGGGCUCAGCGAG 22 9489
BCLllA-7807 + GCUUAGAGAAGGGGCUCAGCGAG 23 9490
BCLllA-7808 + CGCUU AGAGAAGGGGCUCAGCGAG 24 9491
BCLllA-7809 + GGAUUGCAGAGGAGGGAG 18 9492
BCLllA-7810 + CGGAUUGCAGAGGAGGGAG 19 9493
BCLllA-6075 + GCGGAUUGCAGAGGAGGGAG 20 9494
BCLllA-7811 + GGCGGAUUGCAGAGGAGGGAG 21 9495
BCLllA-7812 + GGGCGGAUUGCAGAGGAGGGAG 22 9496
BCLllA-7813 + GGGGCGGAUUGCAGAGGAGGGAG 23 9497
BCLllA-7814 + AGGGGCGGAUUGCAGAGGAGGGAG 24 9498
BCLllA-7815 + CCGGGGGCUGGGAGGGAG 18 9499
BCLllA-7816 + ACCGGGGGCUGGGAGGGAG 19 9500
BCLllA-7817 + GACCGGGGGCUGGGAGGGAG 20 9501
BCLllA-7818 + UGACCGGGGGCUGGGAGGGAG 21 9502
BCLllA-7819 + U UGACCGGGGGCUGGGAGGGAG 22 9503
BCLllA-7820 + CUUGACCGGGGGCUGGGAGGGAG 23 9504
BCLllA-7821 + ACU UGACCGGGGGCUGGGAGGGAG 24 9505
BCLllA-7822 + CUGAAGUGCUGCAUGGAG 18 9506
BCLllA-7823 + GCUGAAGUGCUGCAUGGAG 19 9507
BCLllA-7824 + CGCUGAAGUGCUGCAUGGAG 20 9508
BCLllA-7825 + UCGCUGAAGUGCUGCAUGGAG 21 9509
BCLllA-7826 + CUCGCUGAAGUGCUGCAUGGAG 22 9510
BCLllA-7827 + CCUCGCUGAAGUGCUGCAUGGAG 23 9511
BCLllA-7828 + GCCUCGCUGAAGUGCUGCAUGGAG 24 9512
BCLllA-7829 + CGUCUGCCCUCUU UUGAG 18 9513
BCLllA-7830 + GCGUCUGCCCUCUUUUGAG 19 9514
BCLllA-7831 + UGCGUCUGCCCUCUUU UGAG 20 9515 BCLllA-7832 + CUGCGUCUGCCCUCU UUUGAG 21 9516
BCLllA-7833 + GCUGCGUCUGCCCUCU UUUGAG 22 9517
BCLllA-7834 + CGCUGCGUCUGCCCUCU UUUGAG 23 9518
BCLllA-7835 + UCGCUGCGUCUGCCCUCUUUUGAG 24 9519
BCLllA-7836 + CCGAGGAGUGCUCCGACG 18 9520
BCLllA-7837 + UCCGAGGAGUGCUCCGACG 19 9521
BCLllA-6080 + CUCCGAGGAGUGCUCCGACG 20 9522
BCLllA-7838 + UCUCCGAGGAGUGCUCCGACG 21 9523
BCLllA-7839 + U UCUCCGAGGAGUGCUCCGACG 22 9524
BCLllA-7840 + GU UCUCCGAGGAGUGCUCCGACG 23 9525
BCLllA-7841 + CGU UCUCCGAGGAGUGCUCCGACG 24 9526
BCLllA-7842 + ACCAUGCCCUGCAUGACG 18 9527
BCLllA-7843 + CACCAUGCCCUGCAUGACG 19 9528
BCLllA-7844 + GCACCAUGCCCUGCAUGACG 20 9529
BCLllA-7845 + AGCACCAUGCCCUGCAUGACG 21 9530
BCLllA-7846 + GAGCACCAUGCCCUGCAUGACG 22 9531
BCLllA-7847 + UGAGCACCAUGCCCUGCAUGACG 23 9532
BCLllA-7848 + CUGAGCACCAUGCCCUGCAUGACG 24 9533
BCLllA-7849 + CCGAGGCCGACUCGCCCG 18 9534
BCLllA-7850 + CCCGAGGCCGACUCGCCCG 19 9535
BCLllA-6088 + CCCCGAGGCCGACUCGCCCG 20 9536
BCLllA-7851 + CCCCCGAGGCCGACUCGCCCG 21 9537
BCLllA-7852 + CCCCCCGAGGCCGACUCGCCCG 22 9538
BCLllA-7853 + GCCCCCCGAGGCCGACUCGCCCG 23 9539
BCLllA-7854 + GGCCCCCCGAGGCCGACUCGCCCG 24 9540
BCLllA-7855 + CUGGAGGCCGCGUAGCCG 18 9541
BCLllA-7856 + CCUGGAGGCCGCGUAGCCG 19 9542
BCLllA-7857 + GCCUGGAGGCCGCGUAGCCG 20 9543
BCLllA-7858 + UGCCUGGAGGCCGCGUAGCCG 21 9544
BCLllA-7859 + CUGCCUGGAGGCCGCGUAGCCG 22 9545
BCLllA-7860 + GCUGCCUGGAGGCCGCGUAGCCG 23 9546
BCLllA-7861 + AGCUGCCUGGAGGCCGCGUAGCCG 24 9547
BCLllA-7862 + AAUUUGAACGUCUUGCCG 18 9548
BCLllA-7863 + AAAUUUGAACGUCUUGCCG 19 9549
BCLllA-7864 + GAAAUUUGAACGUCUUGCCG 20 9550
BCLllA-7865 + UGAAAUUUGAACGUCU UGCCG 21 9551
BCLllA-7866 + CUGAAAUUUGAACGUCUUGCCG 22 9552
BCLllA-7867 + UCUGAAAUUUGAACGUCUUGCCG 23 9553
BCLllA-7868 + CUCUGAAAUUUGAACGUCUUGCCG 24 9554
BCLllA-7869 + UCUCCGAGGAGUGCUCCG 18 9555
BCLllA-7870 + U UCUCCGAGGAGUGCUCCG 19 9556
BCLllA-7871 + GUUCUCCGAGGAGUGCUCCG 20 9557 BCLllA-7872 + CGUUCUCCGAGGAGUGCUCCG 21 9558
BCLllA-7873 + CCGUUCUCCGAGGAGUGCUCCG 22 9559
BCLllA-7874 + CCCGUUCUCCGAGGAGUGCUCCG 23 9560
BCLllA-7875 + UCCCGU UCUCCGAGGAGUGCUCCG 24 9561
BCLllA-7876 + CGCUGGUGCCGGGU UCCG 18 9562
BCLllA-7877 + UCGCUGGUGCCGGGUUCCG 19 9563
BCLllA-6096 + GUCGCUGGUGCCGGGU UCCG 20 9564
BCLllA-7878 + AGUCGCUGGUGCCGGGUUCCG 21 9565
BCLllA-7879 + AAGUCGCUGGUGCCGGGUUCCG 22 9566
BCLllA-7880 + CAAGUCGCUGGUGCCGGGUUCCG 23 9567
BCLllA-7881 + CCAAGUCGCUGGUGCCGGGUUCCG 24 9568
BCLllA-7882 + GCCGGCCUGGGGACAGCG 18 9569
BCLllA-7883 + GGCCGGCCUGGGGACAGCG 19 9570
BCLllA-7884 + GGGCCGGCCUGGGGACAGCG 20 9571
BCLllA-7885 + UGGGCCGGCCUGGGGACAGCG 21 9572
BCLllA-7886 + CUGGGCCGGCCUGGGGACAGCG 22 9573
BCLllA-7887 + GCUGGGCCGGCCUGGGGACAGCG 23 9574
BCLllA-7888 + GGCUGGGCCGGCCUGGGGACAGCG 24 9575
BCLllA-7889 + GGU UCCGGGGAGCUGGCG 18 9576
BCLllA-7890 + GGGUUCCGGGGAGCUGGCG 19 9577
BCLllA-7891 + CGGGU UCCGGGGAGCUGGCG 20 9578
BCLllA-7892 + CCGGGUUCCGGGGAGCUGGCG 21 9579
BCLllA-7893 + GCCGGGUUCCGGGGAGCUGGCG 22 9580
BCLllA-7894 + UGCCGGGUUCCGGGGAGCUGGCG 23 9581
BCLllA-7895 + GUGCCGGGU UCCGGGGAGCUGGCG 24 9582
BCLllA-7896 + CCCCAGGCGCUCUAUGCG 18 9583
BCLllA-7897 + CCCCCAGGCGCUCUAUGCG 19 9584
BCLllA-7898 + GCCCCCAGGCGCUCUAUGCG 20 9585
BCLllA-7899 + CGCCCCCAGGCGCUCUAUGCG 21 9586
BCLllA-7900 + CCGCCCCCAGGCGCUCUAUGCG 22 9587
BCLllA-7901 + UCCGCCCCCAGGCGCUCUAUGCG 23 9588
BCLllA-7902 + U UCCGCCCCCAGGCGCUCUAUGCG 24 9589
BCLllA-7903 + ACCUGGUGGAAGGCCUCG 18 9590
BCLllA-7904 + GACCUGGUGGAAGGCCUCG 19 9591
BCLllA-7905 + GGACCUGGUGGAAGGCCUCG 20 9592
BCLllA-7906 + AGGACCUGGUGGAAGGCCUCG 21 9593
BCLllA-7907 + CAGGACCUGGUGGAAGGCCUCG 22 9594
BCLllA-7908 + CCAGGACCUGGUGGAAGGCCUCG 23 9595
BCLllA-7909 + CCCAGGACCUGGUGGAAGGCCUCG 24 9596
BCLllA-7910 + GCGGUGGAGAGACCGUCG 18 9597
BCLllA-7911 + GGCGGUGGAGAGACCGUCG 19 9598
BCLllA-7912 + UGGCGGUGGAGAGACCGUCG 20 9599 BCLllA-7913 + CUGGCGGUGGAGAGACCGUCG 21 9600
BCLllA-7914 + GCUGGCGGUGGAGAGACCGUCG 22 9601
BCLllA-7915 + AGCUGGCGGUGGAGAGACCGUCG 23 9602
BCLllA-7916 + GAGCUGGCGGUGGAGAGACCGUCG 24 9603
BCLllA-7917 + GAGUCUCCGAAGCUAAGG 18 9604
BCLllA-7918 + GGAGUCUCCGAAGCUAAGG 19 9605
BCLllA-7919 + UGGAGUCUCCGAAGCUAAGG 20 9606
BCLllA-7920 + CUGGAGUCUCCGAAGCUAAGG 21 9607
BCLllA-7921 + UCUGGAGUCUCCGAAGCUAAGG 22 9608
BCLllA-7922 + GUCUGGAGUCUCCGAAGCUAAGG 23 9609
BCLllA-7923 + UGUCUGGAGUCUCCGAAGCUAAGG 24 9610
BCLllA-7924 + GGUGGUGGACUAAACAGG 18 9611
BCLllA-7925 + CGGUGGUGGACUAAACAGG 19 9612
BCLllA-6111 + UCGGUGGUGGACUAAACAGG 20 9613
BCLllA-7926 + CUCGGUGGUGGACUAAACAGG 21 9614
BCLllA-7927 + UCUCGGUGGUGGACUAAACAGG 22 9615
BCLllA-7928 + GUCUCGGUGGUGGACUAAACAGG 23 9616
BCLllA-7929 + UGUCUCGGUGGUGGACUAAACAGG 24 9617
BCLllA-7930 + AGGGGGGGCGUCGCCAGG 18 9618
BCLllA-7931 + GAGGGGGGGCGUCGCCAGG 19 9619
BCLllA-7932 + GGAGGGGGGGCGUCGCCAGG 20 9620
BCLllA-7933 + GGGAGGGGGGGCGUCGCCAGG 21 9621
BCLllA-7934 + AGGGAGGGGGGGCGUCGCCAGG 22 9622
BCLllA-7935 + GAGGGAGGGGGGGCGUCGCCAGG 23 9623
BCLllA-7936 + GGAGGGAGGGGGGGCGUCGCCAGG 24 9624
BCLllA-7937 + AAGCGCCCU UCUGCCAGG 18 9625
BCLllA-7938 + AAAGCGCCCUUCUGCCAGG 19 9626
BCLllA-7939 + GAAAGCGCCCUUCUGCCAGG 20 9627
BCLllA-7940 + GGAAAGCGCCCUUCUGCCAGG 21 9628
BCLllA-7941 + UGGAAAGCGCCCUUCUGCCAGG 22 9629
BCLllA-7942 + GUGGAAAGCGCCCUUCUGCCAGG 23 9630
BCLllA-7943 + GGUGGAAAGCGCCCUUCUGCCAGG 24 9631
BCLllA-7944 + AUCGCGGCCGGGGGCAGG 18 9632
BCLllA-7945 + CAUCGCGGCCGGGGGCAGG 19 9633
BCLllA-7946 + GCAUCGCGGCCGGGGGCAGG 20 9634
BCLllA-7947 + GGCAUCGCGGCCGGGGGCAGG 21 9635
BCLllA-7948 + GGGCAUCGCGGCCGGGGGCAGG 22 9636
BCLllA-7949 + UGGGCAUCGCGGCCGGGGGCAGG 23 9637
BCLllA-7950 + UUGGGCAUCGCGGCCGGGGGCAGG 24 9638
BCLllA-7951 + CCGUUCUCCGGGAUCAGG 18 9639
BCLllA-7952 + CCCGUUCUCCGGGAUCAGG 19 9640
BCLllA-7953 + CCCCGUUCUCCGGGAUCAGG 20 9641 BCLllA-7954 + UCCCCGUUCUCCGGGAUCAGG 21 9642
BCLllA-7955 + GUCCCCGUUCUCCGGGAUCAGG 22 9643
BCLllA-7956 + CGUCCCCGUUCUCCGGGAUCAGG 23 9644
BCLllA-7957 + UCGUCCCCGUUCUCCGGGAUCAGG 24 9645
BCLllA-7958 + GAAGAACCUAGAAAGAGG 18 9646
BCLllA-7959 + UGAAGAACCUAGAAAGAGG 19 9647
BCLllA-7960 + GUGAAGAACCUAGAAAGAGG 20 9648
BCLllA-7961 + UG UGAAGAACCUAGAAAGAGG 21 9649
BCLllA-7962 + GUGUGAAGAACCUAGAAAGAGG 22 9650
BCLllA-7963 + UGUGUGAAGAACCUAGAAAGAGG 23 9651
BCLllA-7964 + GUGUGUGAAGAACCUAGAAAGAGG 24 9652
BCLllA-7965 + AGAGGUUGGAGACAGAGG 18 9653
BCLllA-7966 + AAGAGGUUGGAGACAGAGG 19 9654
BCLllA-6113 + AAAGAGGUUGGAGACAGAGG 20 9655
BCLllA-7967 + GAAAGAGGUUGGAGACAGAGG 21 9656
BCLllA-7968 + AGAAAGAGGUUGGAGACAGAGG 22 9657
BCLllA-7969 + UAGAAAGAGGUUGGAGACAGAGG 23 9658
BCLllA-7970 + CUAGAAAGAGGUUGGAGACAGAGG 24 9659
BCLllA-7971 + AGGGGCGGAUUGCAGAGG 18 9660
BCLllA-7972 + GAGGGGCGGAUUGCAGAGG 19 9661
BCLllA-6114 + GGAGGGGCGGAUUGCAGAGG 20 9662
BCLllA-7973 + AGGAGGGGCGGAUUGCAGAGG 21 9663
BCLllA-7974 + GAGGAGGGGCGGAUUGCAGAGG 22 9664
BCLllA-7975 + GGAGGAGGGGCGGAUUGCAGAGG 23 9665
BCLllA-7976 + GGGAGGAGGGGCGGAUUGCAGAGG 24 9666
BCLllA-7977 + GGCGGAUUGCAGAGGAGG 18 9667
BCLllA-7978 + GGGCGGAUUGCAGAGGAGG 19 9668
BCLllA-7979 + GGGGCGGAUUGCAGAGGAGG 20 9669
BCLllA-7980 + AGGGGCGGAUUGCAGAGGAGG 21 9670
BCLllA-7981 + GAGGGGCGGAUUGCAGAGGAGG 22 9671
BCLllA-7982 + GGAGGGGCGGAUUGCAGAGGAGG 23 9672
BCLllA-7983 + AGGAGGGGCGGAUUGCAGAGGAGG 24 9673
BCLllA-7984 + GAUUGCAGAGGAGGGAGG 18 9674
BCLllA-7985 + GGAUUGCAGAGGAGGGAGG 19 9675
BCLllA-6118 + CGGAUUGCAGAGGAGGGAGG 20 9676
BCLllA-7986 + GCGGAUUGCAGAGGAGGGAGG 21 9677
BCLllA-7987 + GGCGGAUUGCAGAGGAGGGAGG 22 9678
BCLllA-7988 + GGGCGGAUUGCAGAGGAGGGAGG 23 9679
BCLllA-7989 + GGGGCGGAUUGCAGAGGAGGGAGG 24 9680
BCLllA-7990 + CGGGGGCUGGGAGGGAGG 18 9681
BCLllA-7991 + CCGGGGGCUGGGAGGGAGG 19 9682
BCLllA-6119 + ACCGGGGGCUGGGAGGGAGG 20 9683 BCLllA-7992 + GACCGGGGGCUGGGAGGGAGG 21 9684
BCLllA-7993 + UGACCGGGGGCUGGGAGGGAGG 22 9685
BCLllA-7994 + UUGACCGGGGGCUGGGAGGGAGG 23 9686
BCLllA-7995 + CUUGACCGGGGGCUGGGAGGGAGG 24 9687
BCLllA-7996 + UGACCGGGGGCUGGGAGG 18 9688
BCLllA-7997 + U UGACCGGGGGCUGGGAGG 19 9689
BCLllA-7998 + CUUGACCGGGGGCUGGGAGG 20 9690
BCLllA-7999 + ACU UGACCGGGGGCUGGGAGG 21 9691
BCLllA-8000 + GACUUGACCGGGGGCUGGGAGG 22 9692
BCLllA-8001 + GGACUUGACCGGGGGCUGGGAGG 23 9693
BCLllA-8002 + UGGACUUGACCGGGGGCUGGGAGG 24 9694
BCLllA-8003 + CCGUGU UGGGCAUCGCGG 18 9695
BCLllA-8004 + UCCGUGUUGGGCAUCGCGG 19 9696
BCLllA-8005 + CUCCGUGUUGGGCAUCGCGG 20 9697
BCLllA-8006 + UCUCCGUGUUGGGCAUCGCGG 21 9698
BCLllA-8007 + UUCUCCGUGUUGGGCAUCGCGG 22 9699
BCLllA-8008 + GUUCUCCGUGUUGGGCAUCGCGG 23 9700
BCLllA-8009 + CGUUCUCCGUGU UGGGCAUCGCGG 24 9701
BCLllA-8010 + GUUCCGGGGAGCUGGCGG 18 9702
BCLllA-8011 + GGU UCCGGGGAGCUGGCGG 19 9703
BCLllA-6125 + GGGUUCCGGGGAGCUGGCGG 20 9704
BCLllA-8012 + CGGGU UCCGGGGAGCUGGCGG 21 9705
BCLllA-8013 + CCGGGUUCCGGGGAGCUGGCGG 22 9706
BCLllA-8014 + GCCGGGU UCCGGGGAGCUGGCGG 23 9707
BCLllA-8015 + UGCCGGGUUCCGGGGAGCUGGCGG 24 9708
BCLllA-8016 + CCCAGGCGCUCUAUGCGG 18 9709
BCLllA-8017 + CCCCAGGCGCUCUAUGCGG 19 9710
BCLllA-6126 + CCCCCAGGCGCUCUAUGCGG 20 9711
BCLllA-8018 + GCCCCCAGGCGCUCUAUGCGG 21 9712
BCLllA-8019 + CGCCCCCAGGCGCUCUAUGCGG 22 9713
BCLllA-8020 + CCGCCCCCAGGCGCUCUAUGCGG 23 9714
BCLllA-8021 + UCCGCCCCCAGGCGCUCUAUGCGG 24 9715
BCLllA-8022 + GUGGUGGACUAAACAGGG 18 9716
BCLllA-8023 + GGUGGUGGACUAAACAGGG 19 9717
BCLllA-6131 + CGGUGGUGGACUAAACAGGG 20 9718
BCLllA-8024 + UCGGUGGUGGACUAAACAGGG 21 9719
BCLllA-8025 + CUCGGUGGUGGACUAAACAGGG 22 9720
BCLllA-8026 + UCUCGGUGGUGGACUAAACAGGG 23 9721
BCLllA-8027 + GUCUCGGUGGUGGACUAAACAGGG 24 9722
BCLllA-8028 + GCGGAUUGCAGAGGAGGG 18 9723
BCLllA-8029 + GGCGGAUUGCAGAGGAGGG 19 9724
BCLllA-6133 + GGGCGGAUUGCAGAGGAGGG 20 9725 BCLllA-8030 + GGGGCGGAUUGCAGAGGAGGG 21 9726
BCLllA-8031 + AGGGGCGGAUUGCAGAGGAGGG 22 9727
BCLllA-8032 + GAGGGGCGGAUUGCAGAGGAGGG 23 9728
BCLllA-8033 + GGAGGGGCGGAUUGCAGAGGAGGG 24 9729
BCLllA-8034 + GACCGGGGGCUGGGAGGG 18 9730
BCLllA-8035 + UGACCGGGGGCUGGGAGGG 19 9731
BCLllA-6135 + UUGACCGGGGGCUGGGAGGG 20 9732
BCLllA-8036 + CUUGACCGGGGGCUGGGAGGG 21 9733
BCLllA-8037 + ACU UGACCGGGGGCUGGGAGGG 22 9734
BCLllA-8038 + GACUUGACCGGGGGCUGGGAGGG 23 9735
BCLllA-8039 + GGACUUGACCGGGGGCUGGGAGGG 24 9736
BCLllA-8040 + AGUAACCUUUGCAUAGGG 18 9737
BCLllA-8041 + CAGUAACCUUUGCAUAGGG 19 9738
BCLllA-8042 + GCAGUAACCUUUGCAUAGGG 20 9739
BCLllA-8043 + UGCAGUAACCUU UGCAUAGGG 21 9740
BCLllA-8044 + U UGCAGUAACCU UUGCAUAGGG 22 9741
BCLllA-8045 + GU UGCAGUAACCUUUGCAUAGGG 23 9742
BCLllA-8046 + GGUUGCAGUAACCUUUGCAUAGGG 24 9743
BCLllA-8047 + GCCCUGCAUGACGUCGGG 18 9744
BCLllA-8048 + UGCCCUGCAUGACGUCGGG 19 9745
BCLllA-8049 + AUGCCCUGCAUGACGUCGGG 20 9746
BCLllA-8050 + CAUGCCCUGCAUGACGUCGGG 21 9747
BCLllA-8051 + CCAUGCCCUGCAUGACGUCGGG 22 9748
BCLllA-8052 + ACCAUGCCCUGCAUGACGUCGGG 23 9749
BCLllA-8053 + CACCAUGCCCUGCAUGACGUCGGG 24 9750
BCLllA-8054 + CUUGGACUUGACCGGGGG 18 9751
BCLllA-8055 + ACU UGGACUUGACCGGGGG 19 9752
BCLllA-8056 + GACUUGGACUUGACCGGGGG 20 9753
BCLllA-8057 + UGACUUGGACUUGACCGGGGG 21 9754
BCLllA-8058 + AUGACUUGGACUUGACCGGGGG 22 9755
BCLllA-8059 + CAUGACUUGGACUUGACCGGGGG 23 9756
BCLllA-8060 + GCAUGACUUGGACUUGACCGGGGG 24 9757
BCLllA-8061 + ACU UGACCGGGGGCUGGG 18 9758
BCLllA-8062 + GACUUGACCGGGGGCUGGG 19 9759
BCLllA-6146 + GGACUUGACCGGGGGCUGGG 20 9760
BCLllA-8063 + UGGACUUGACCGGGGGCUGGG 21 9761
BCLllA-8064 + UUGGACUUGACCGGGGGCUGGG 22 9762
BCLllA-8065 + CUUGGACUUGACCGGGGGCUGGG 23 9763
BCLllA-8066 + ACUUGGACUUGACCGGGGGCUGGG 24 9764
BCLllA-8067 + CAUGGAGAGGUGGCUGGG 18 9765
BCLllA-8068 + CCAUGGAGAGGUGGCUGGG 19 9766
BCLllA-8069 + CCCAUGGAGAGGUGGCUGGG 20 9767 BCLllA-8070 + UCCCAUGGAGAGGUGGCUGGG 21 9768
BCLllA-8071 + AUCCCAUGGAGAGGUGGCUGGG 22 9769
BCLllA-8072 + AAUCCCAUGGAGAGGUGGCUGGG 23 9770
BCLllA-8073 + GAAUCCCAUGGAGAGGUGGCUGGG 24 9771
BCLllA-8074 + AAACAGGGGGGGAGUGGG 18 9772
BCLllA-8075 + UAAACAGGGGGGGAGUGGG 19 9773
BCLllA-6147 + CUAAACAGGGGGGGAGUGGG 20 9774
BCLllA-8076 + ACU AAACAGGGGGGGAGUGGG 21 9775
BCLllA-8077 + GACUAAACAGGGGGGGAGUGGG 22 9776
BCLllA-8078 + GGACUAAACAGGGGGGGAGUGGG 23 9777
BCLllA-8079 + UGGACUAAACAGGGGGGGAGUGGG 24 9778
BCLllA-8080 + UCCUAGAGAAAUCCAUGG 18 9779
BCLllA-8081 + CUCCUAGAGAAAUCCAUGG 19 9780
BCLllA-6149 + UCUCCUAGAGAAAUCCAUGG 20 9781
BCLllA-8082 + GUCUCCUAGAGAAAUCCAUGG 21 9782
BCLllA-8083 + AGUCUCCUAGAGAAAUCCAUGG 22 9783
BCLllA-8084 + AAGUCUCCUAGAGAAAUCCAUGG 23 9784
BCLllA-8085 + UAAGUCUCCUAGAGAAAUCCAUGG 24 9785
BCLllA-8086 + UUCUCGCCCAGGACCUGG 18 9786
BCLllA-8087 + CUUCUCGCCCAGGACCUGG 19 9787
BCLllA-6152 + GCUUCUCGCCCAGGACCUGG 20 9788
BCLllA-8088 + UGCUUCUCGCCCAGGACCUGG 21 9789
BCLllA-8089 + AUGCUUCUCGCCCAGGACCUGG 22 9790
BCLllA-8090 + UAUGCUUCUCGCCCAGGACCUGG 23 9791
BCLllA-8091 + UUAUGCUUCUCGCCCAGGACCUGG 24 9792
BCLllA-8092 + GGGCGGCUUGCUACCUGG 18 9793
BCLllA-8093 + AGGGCGGCUUGCUACCUGG 19 9794
BCLllA-8094 + AAGGGCGGCUUGCUACCUGG 20 9795
BCLllA-8095 + GAAGGGCGGCUUGCUACCUGG 21 9796
BCLllA-8096 + GGAAGGGCGGCUUGCUACCUGG 22 9797
BCLllA-8097 + AGGAAGGGCGGCUUGCUACCUGG 23 9798
BCLllA-8098 + CAGGAAGGGCGGCUUGCUACCUGG 24 9799
BCLllA-8099 + GACUUGACCGGGGGCUGG 18 9800
BCLllA-8100 + GGACUUGACCGGGGGCUGG 19 9801
BCLllA-8101 + UGGACUUGACCGGGGGCUGG 20 9802
BCLllA-8102 + UUGGACUUGACCGGGGGCUGG 21 9803
BCLllA-8103 + CUUGGACUUGACCGGGGGCUGG 22 9804
BCLllA-8104 + ACU UGGACUUGACCGGGGGCUGG 23 9805
BCLllA-8105 + GACUUGGACUUGACCGGGGGCUGG 24 9806
BCLllA-8106 + UAAACAGGGGGGGAGUGG 18 9807
BCLllA-8107 + CUAAACAGGGGGGGAGUGG 19 9808
BCLllA-8108 + ACUAAACAGGGGGGGAGUGG 20 9809 BCLllA-8109 + GACUAAACAGGGGGGGAGUGG 21 9810
BCLllA-8110 + GGACUAAACAGGGGGGGAGUGG 22 9811
BCLllA-8111 + UGGACUAAACAGGGGGGGAGUGG 23 9812
BCLllA-8112 + GUGGACUAAACAGGGGGGGAGUGG 24 9813
BCLllA-8113 + AAUCCCAUGGAGAGGUGG 18 9814
BCLllA-8114 + GAAUCCCAUGGAGAGGUGG 19 9815
BCLllA-8115 + UGAAUCCCAUGGAGAGGUGG 20 9816
BCLllA-8116 + AUGAAUCCCAUGGAGAGGUGG 21 9817
BCLllA-8117 + UAUGAAUCCCAUGGAGAGGUGG 22 9818
BCLllA-8118 + AUAUGAAUCCCAUGGAGAGGUGG 23 9819
BCLllA-8119 + AAUAUGAAUCCCAUGGAGAGGUGG 24 9820
BCLllA-8120 + UGCAAUAUGAAUCCCAUG 18 9821
BCLllA-8121 + CUGCAAUAUGAAUCCCAUG 19 9822
BCLllA-8122 + UCUGCAAUAUGAAUCCCAUG 20 9823
BCLllA-8123 + GUCUGCAAUAUGAAUCCCAUG 21 9824
BCLllA-8124 + UGUCUGCAAUAUGAAUCCCAUG 22 9825
BCLllA-8125 + U UGUCUGCAAUAUGAAUCCCAUG 23 9826
BCLllA-8126 + AUUGUCUGCAAUAUGAAUCCCAUG 24 9827
BCLllA-8127 + CUCCUAGAGAAAUCCAUG 18 9828
BCLllA-8128 + UCUCCUAGAGAAAUCCAUG 19 9829
BCLllA-8129 + GUCUCCUAGAGAAAUCCAUG 20 9830
BCLllA-8130 + AGUCUCCUAGAGAAAUCCAUG 21 9831
BCLllA-8131 + AAGUCUCCUAGAGAAAUCCAUG 22 9832
BCLllA-8132 + UAAGUCUCCUAGAGAAAUCCAUG 23 9833
BCLllA-8133 + CUAAGUCUCCUAGAGAAAUCCAUG 24 9834
BCLllA-8134 + UCGGACUUGACCGUCAUG 18 9835
BCLllA-8135 + GUCGGACUUGACCGUCAUG 19 9836
BCLllA-6164 + CGUCGGACU UGACCGUCAUG 20 9837
BCLllA-8136 + UCGUCGGACUUGACCGUCAUG 21 9838
BCLllA-8137 + GUCGUCGGACUUGACCGUCAUG 22 9839
BCLllA-8138 + CGUCGUCGGACUUGACCGUCAUG 23 9840
BCLllA-8139 + CCGUCGUCGGACUUGACCGUCAUG 24 9841
BCLllA-8140 + CUUCUCGCCCAGGACCUG 18 9842
BCLllA-8141 + GCU UCUCGCCCAGGACCUG 19 9843
BCLllA-8142 + UGCUUCUCGCCCAGGACCUG 20 9844
BCLllA-8143 + AUGCUUCUCGCCCAGGACCUG 21 9845
BCLllA-8144 + UAUGCUUCUCGCCCAGGACCUG 22 9846
BCLllA-8145 + UUAUGCUUCUCGCCCAGGACCUG 23 9847
BCLllA-8146 + CUUAUGCUUCUCGCCCAGGACCUG 24 9848
BCLllA-8147 + AUUCUGCACCUAGUCCUG 18 9849
BCLllA-8148 + CAU UCUGCACCUAGUCCUG 19 9850
BCLllA-8149 + ACAUUCUGCACCUAGUCCUG 20 9851 BCLllA-8150 + GACAUUCUGCACCUAGUCCUG 21 9852
BCLllA-8151 + GGACAUUCUGCACCUAGUCCUG 22 9853
BCLllA-8152 + AGGACAUUCUGCACCUAGUCCUG 23 9854
BCLllA-8153 + AAGGACAUUCUGCACCUAGUCCUG 24 9855
BCLllA-6537 + GU UGUACAUGUGUAGCUG 18 9856
BCLllA-6538 + AGUUGUACAUGUGUAGCUG 19 9857
BCLllA-6539 + AAGUUGUACAUGUGUAGCUG 20 9858
BCLllA-6540 + CAAGUUGUACAUGUGUAGCUG 21 9859
BCLllA-6541 + GCAAGUUGUACAUGUGUAGCUG 22 9860
BCLllA-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 9861
BCLllA-6543 + UUGCAAGUUGUACAUGUGUAGCUG 24 9862
BCLllA-8154 + GAGUACACGUUCUCCGUG 18 9863
BCLllA-8155 + CGAGUACACGUUCUCCGUG 19 9864
BCLllA-8156 + GCGAGUACACGUUCUCCGUG 20 9865
BCLllA-8157 + UGCGAGUACACGUUCUCCGUG 21 9866
BCLllA-8158 + CUGCGAGUACACGUUCUCCGUG 22 9867
BCLllA-8159 + ACUGCGAGUACACGUUCUCCGUG 23 9868
BCLllA-8160 + CACUGCGAGUACACGUUCUCCGUG 24 9869
BCLllA-8161 + CCAGCUCCCCGGGCGGUG 18 9870
BCLllA-8162 + UCCAGCUCCCCGGGCGGUG 19 9871
BCLllA-6177 + GUCCAGCUCCCCGGGCGGUG 20 9872
BCLllA-8163 + CGUCCAGCUCCCCGGGCGGUG 21 9873
BCLllA-8164 + CCGUCCAGCUCCCCGGGCGGUG 22 9874
BCLllA-8165 + UCCGUCCAGCUCCCCGGGCGGUG 23 9875
BCLllA-8166 + CUCCGUCCAGCUCCCCGGGCGGUG 24 9876
BCLllA-8167 + UCCGGGGAGCUGGCGGUG 18 9877
BCLllA-8168 + U UCCGGGGAGCUGGCGGUG 19 9878
BCLllA-8169 + GU UCCGGGGAGCUGGCGGUG 20 9879
BCLllA-8170 + GGUUCCGGGGAGCUGGCGGUG 21 9880
BCLllA-8171 + GGGUUCCGGGGAGCUGGCGGUG 22 9881
BCLllA-8172 + CGGGUUCCGGGGAGCUGGCGGUG 23 9882
BCLllA-8173 + CCGGGUUCCGGGGAGCUGGCGGUG 24 9883
BCLllA-8174 + CCAAGUGAUGUCUCGGUG 18 9884
BCLllA-8175 + UCCAAGUGAUGUCUCGGUG 19 9885
BCLllA-8176 + GUCCAAGUGAUGUCUCGGUG 20 9886
BCLllA-8177 + GGUCCAAGUGAUGUCUCGGUG 21 9887
BCLllA-8178 + GGGUCCAAGUGAUGUCUCGGUG 22 9888
BCLllA-8179 + GGGGUCCAAGUGAUGUCUCGGUG 23 9889
BCLllA-8180 + GGGGGUCCAAGUGAUGUCUCGGUG 24 9890
BCLllA-8181 + AGCUCCCCGGGCGGUGUG 18 9891
BCLllA-8182 + CAGCUCCCCGGGCGGUGUG 19 9892
BCLllA-8183 + CCAGCUCCCCGGGCGGUGUG 20 9893 BCLllA-8184 + UCCAGCUCCCCGGGCGGUGUG 21 9894
BCLllA-8185 + GUCCAGCUCCCCGGGCGGUGUG 22 9895
BCLllA-8186 + CGUCCAGCUCCCCGGGCGGUGUG 23 9896
BCLllA-8187 + CCGUCCAGCUCCCCGGGCGGUGUG 24 9897
BCLllA-8188 + GCCGAAUGGGGGUGUGUG 18 9898
BCLllA-8189 + CGCCGAAUGGGGGUGUGUG 19 9899
BCLllA-8190 + ACGCCGAAUGGGGGUGUGUG 20 9900
BCLllA-8191 + UACGCCGAAUGGGGGUGUGUG 21 9901
BCLllA-8192 + CUACGCCGAAUGGGGGUGUGUG 22 9902
BCLllA-8193 + ACU ACGCCGAAUGGGGGUGUGUG 23 9903
BCLllA-8194 + UACUACGCCGAAUGGGGGUGUGUG 24 9904
BCLllA-8195 + GGGAGGAGGGGCGGAU UG 18 9905
BCLllA-8196 + AGGGAGGAGGGGCGGAUUG 19 9906
BCLllA-8197 + GAGGGAGGAGGGGCGGAUUG 20 9907
BCLllA-8198 + GGAGGGAGGAGGGGCGGAUUG 21 9908
BCLllA-8199 + GGGAGGGAGGAGGGGCGGAUUG 22 9909
BCLllA-8200 + UGGGAGGGAGGAGGGGCGGAUUG 23 9910
BCLllA-8201 + CUGGGAGGGAGGAGGGGCGGAUUG 24 9911
BCLllA-8202 + UCGCACAGGUUGCACUUG 18 9912
BCLllA-8203 + GUCGCACAGGU UGCACU UG 19 9913
BCLllA-8204 + GGUCGCACAGGUUGCACUUG 20 9914
BCLllA-8205 + UGGUCGCACAGGUUGCACUUG 21 9915
BCLllA-8206 + GUGGUCGCACAGGUUGCACUUG 22 9916
BCLllA-8207 + CGUGGUCGCACAGGUUGCACUUG 23 9917
BCLllA-8208 + GCGUGGUCGCACAGGUUGCACUUG 24 9918
BCLllA-8209 + ACCAGGUUGCUCUGAAAU 18 9919
BCLllA-8210 + CACCAGGUUGCUCUGAAAU 19 9920
BCLllA-8211 + CCACCAGGU UGCUCUGAAAU 20 9921
BCLllA-8212 + ACCACCAGGUUGCUCUGAAAU 21 9922
BCLllA-8213 + CACCACCAGGU UGCUCUGAAAU 22 9923
BCLllA-8214 + GCACCACCAGGU UGCUCUGAAAU 23 9924
BCLllA-8215 + UGCACCACCAGGUUGCUCUGAAAU 24 9925
BCLllA-8216 + CGGGCCCGGACCACUAAU 18 9926
BCLllA-8217 + CCGGGCCCGGACCACUAAU 19 9927
BCLllA-8218 + CCCGGGCCCGGACCACUAAU 20 9928
BCLllA-8219 + GCCCGGGCCCGGACCACUAAU 21 9929
BCLllA-8220 + UGCCCGGGCCCGGACCACUAAU 22 9930
BCLllA-8221 + CUGCCCGGGCCCGGACCACUAAU 23 9931
BCLllA-8222 + CCUGCCCGGGCCCGGACCACUAAU 24 9932
BCLllA-8223 + GGGCUCUCGAGCUUCCAU 18 9933
BCLllA-8224 + AGGGCUCUCGAGCUUCCAU 19 9934
BCLllA-8225 + AAGGGCUCUCGAGCUUCCAU 20 9935 BCLllA-8226 + UAAGGGCUCUCGAGCUUCCAU 21 9936
BCLllA-8227 + UUAAGGGCUCUCGAGCU UCCAU 22 9937
BCLllA-8228 + CUUAAGGGCUCUCGAGCUUCCAU 23 9938
BCLllA-8229 + ACUUAAGGGCUCUCGAGCUUCCAU 24 9939
BCLllA-8230 + GUCGGACUUGACCGUCAU 18 9940
BCLllA-8231 + CGUCGGACUUGACCGUCAU 19 9941
BCLllA-6186 + UCGUCGGACUUGACCGUCAU 20 9942
BCLllA-8232 + GUCGUCGGACUUGACCGUCAU 21 9943
BCLllA-8233 + CGUCGUCGGACUUGACCGUCAU 22 9944
BCLllA-8234 + CCGUCGUCGGACU UGACCGUCAU 23 9945
BCLllA-8235 + ACCGUCGUCGGACUUGACCGUCAU 24 9946
BCLllA-8236 + AUAGGGCUGGGCCGGCCU 18 9947
BCLllA-8237 + CAUAGGGCUGGGCCGGCCU 19 9948
BCLllA-6198 + GCAUAGGGCUGGGCCGGCCU 20 9949
BCLllA-8238 + UGCAUAGGGCUGGGCCGGCCU 21 9950
BCLllA-8239 + UUGCAUAGGGCUGGGCCGGCCU 22 9951
BCLllA-8240 + UUUGCAUAGGGCUGGGCCGGCCU 23 9952
BCLllA-8241 + CUUUGCAUAGGGCUGGGCCGGCCU 24 9953
BCLllA-8242 + UCUGGAGUCUCCGAAGCU 18 9954
BCLllA-8243 + GUCUGGAGUCUCCGAAGCU 19 9955
BCLllA-8244 + UGUCUGGAGUCUCCGAAGCU 20 9956
BCLllA-8245 + UUGUCUGGAGUCUCCGAAGCU 21 9957
BCLllA-8246 + AUUGUCUGGAGUCUCCGAAGCU 22 9958
BCLllA-8247 + GAUUGUCUGGAGUCUCCGAAGCU 23 9959
BCLllA-8248 + CGAUUGUCUGGAGUCUCCGAAGCU 24 9960
BCLllA-8249 + UCUCGAGCUUGAUGCGCU 18 9961
BCLllA-8250 + U UCUCGAGCUUGAUGCGCU 19 9962
BCLllA-8251 + CUUCUCGAGCUUGAUGCGCU 20 9963
BCLllA-8252 + CCUUCUCGAGCUUGAUGCGCU 21 9964
BCLllA-8253 + UCCU UCUCGAGCUUGAUGCGCU 22 9965
BCLllA-8254 + CUCCUUCUCGAGCUUGAUGCGCU 23 9966
BCLllA-8255 + ACUCCU UCUCGAGCUUGAUGCGCU 24 9967
BCLllA-8256 + UGGACUUGACCGGGGGCU 18 9968
BCLllA-8257 + U UGGACUUGACCGGGGGCU 19 9969
BCLllA-6207 + CUUGGACUUGACCGGGGGCU 20 9970
BCLllA-8258 + ACUUGGACUUGACCGGGGGCU 21 9971
BCLllA-8259 + GACUUGGACUUGACCGGGGGCU 22 9972
BCLllA-8260 + UGACUUGGACUUGACCGGGGGCU 23 9973
BCLllA-8261 + AUGACUUGGACUUGACCGGGGGCU 24 9974
BCLllA-8262 + UCCCAUGGAGAGGUGGCU 18 9975
BCLllA-8263 + AUCCCAUGGAGAGGUGGCU 19 9976
BCLllA-6208 + AAUCCCAUGGAGAGGUGGCU 20 9977 BCLllA-8264 + GAAUCCCAUGGAGAGGUGGCU 21 9978
BCLllA-8265 + UGAAUCCCAUGGAGAGGUGGCU 22 9979
BCLllA-8266 + AUGAAUCCCAUGGAGAGGUGGCU 23 9980
BCLllA-8267 + UAUGAAUCCCAUGGAGAGGUGGCU 24 9981
BCLllA-8268 + GUGCACCACCAGGUUGCU 18 9982
BCLllA-8269 + GGUGCACCACCAGGUUGCU 19 9983
BCLllA-8270 + CGGUGCACCACCAGGUUGCU 20 9984
BCLllA-8271 + CCGGUGCACCACCAGGU UGCU 21 9985
BCLllA-8272 + GCCGGUGCACCACCAGGUUGCU 22 9986
BCLllA-8273 + CGCCGGUGCACCACCAGGU UGCU 23 9987
BCLllA-8274 + GCGCCGGUGCACCACCAGGU UGCU 24 9988
BCLllA-8275 + AAGCUAAGGAAGGGAUCU 18 9989
BCLllA-8276 + GAAGCUAAGGAAGGGAUCU 19 9990
BCLllA-8277 + CGAAGCUAAGGAAGGGAUCU 20 9991
BCLllA-8278 + CCGAAGCUAAGGAAGGGAUCU 21 9992
BCLllA-8279 + UCCGAAGCUAAGGAAGGGAUCU 22 9993
BCLllA-8280 + CUCCGAAGCUAAGGAAGGGAUCU 23 9994
BCLllA-8281 + UCUCCGAAGCUAAGGAAGGGAUCU 24 9995
BCLllA-8282 + GGCGAUUGUCUGGAGUCU 18 9996
BCLllA-8283 + AGGCGAUUGUCUGGAGUCU 19 9997
BCLllA-8284 + AAGGCGAUUGUCUGGAGUCU 20 9998
BCLllA-8285 + AAAGGCGAUUGUCUGGAGUCU 21 9999
BCLllA-8286 + AAAAGGCGAUUGUCUGGAGUCU 22 10000
BCLllA-8287 + CAAAAGGCGAUUGUCUGGAGUCU 23 10001
BCLllA-8288 + GCAAAAGGCGAUUGUCUGGAGUCU 24 10002
BCLllA-8289 + CCUCCUCGUCCCCGUUCU 18 10003
BCLllA-8290 + UCCUCCUCGUCCCCGUUCU 19 10004
BCLllA-8291 + UUCCUCCUCGUCCCCGUUCU 20 10005
BCLllA-8292 + CUUCCUCCUCGUCCCCGUUCU 21 10006
BCLllA-8293 + UCUUCCUCCUCGUCCCCGU UCU 22 10007
BCLllA-8294 + CUCU UCCUCCUCGUCCCCGUUCU 23 10008
BCLllA-8295 + CCUCUUCCUCCUCGUCCCCGUUCU 24 10009
BCLllA-8296 + AGCGCAAACUCCCGUUCU 18 10010
BCLllA-8297 + AAGCGCAAACUCCCGUUCU 19 10011
BCLllA-8298 + GAAGCGCAAACUCCCGUUCU 20 10012
BCLllA-8299 + AGAAGCGCAAACUCCCGUUCU 21 10013
BCLllA-8300 + GAGAAGCGCAAACUCCCGUUCU 22 10014
BCLllA-8301 + GGAGAAGCGCAAACUCCCGUUCU 23 10015
BCLllA-8302 + UGGAGAAGCGCAAACUCCCGUUCU 24 10016
BCLllA-8303 + GGGGGCU UCAAAUU UUCU 18 10017
BCLllA-8304 + UGGGGGCUUCAAAUUUUCU 19 10018
BCLllA-8305 + CUGGGGGCUUCAAAUUUUCU 20 10019 BCLllA-8306 + CCUGGGGGCU UCAAAUU UUCU 21 10020
BCLllA-8307 + CCCUGGGGGCUUCAAAUUUUCU 22 10021
BCLllA-8308 + CCCCUGGGGGCUUCAAAUUUUCU 23 10022
BCLllA-8309 + ACCCCUGGGGGCU UCAAAUUUUCU 24 10023
BCLllA-8310 + AAGAACCUAGAAAGAGGU 18 10024
BCLllA-8311 + GAAGAACCUAGAAAGAGGU 19 10025
BCLllA-6224 + UGAAGAACCUAGAAAGAGGU 20 10026
BCLllA-8312 + GUGAAGAACCUAGAAAGAGGU 21 10027
BCLllA-8313 + UG UGAAGAACCUAGAAAGAGGU 22 10028
BCLllA-8314 + GUGUGAAGAACCUAGAAAGAGGU 23 10029
BCLllA-8315 + UGUGUGAAGAACCUAGAAAGAGGU 24 10030
BCLllA-8316 + UCCAGCUCCCCGGGCGGU 18 10031
BCLllA-8317 + GUCCAGCUCCCCGGGCGGU 19 10032
BCLllA-8318 + CGUCCAGCUCCCCGGGCGGU 20 10033
BCLllA-8319 + CCGUCCAGCUCCCCGGGCGGU 21 10034
BCLllA-8320 + UCCGUCCAGCUCCCCGGGCGGU 22 10035
BCLllA-8321 + CUCCGUCCAGCUCCCCGGGCGGU 23 10036
BCLllA-8322 + CCUCCGUCCAGCUCCCCGGGCGGU 24 10037
BCLllA-8323 + GAUACCAACCCGCGGGGU 18 10038
BCLllA-8324 + GGAUACCAACCCGCGGGGU 19 10039
BCLllA-8325 + GGGAUACCAACCCGCGGGGU 20 10040
BCLllA-8326 + AGGGAUACCAACCCGCGGGGU 21 10041
BCLllA-8327 + AAGGGAUACCAACCCGCGGGGU 22 10042
BCLllA-8328 + GAAGGGAUACCAACCCGCGGGGU 23 10043
BCLllA-8329 + UGAAGGGAUACCAACCCGCGGGGU 24 10044
BCLllA-8330 + UACGCCGAAUGGGGGUGU 18 10045
BCLllA-8331 + CUACGCCGAAUGGGGGUGU 19 10046
BCLllA-8332 + ACUACGCCGAAUGGGGGUGU 20 10047
BCLllA-8333 + UACUACGCCGAAUGGGGGUGU 21 10048
BCLllA-8334 + GUACUACGCCGAAUGGGGGUGU 22 10049
BCLllA-8335 + GGUACUACGCCGAAUGGGGGUGU 23 10050
BCLllA-8336 + GGGUACUACGCCGAAUGGGGGUGU 24 10051
BCLllA-8337 + GAGGCAAAAGGCGAUUGU 18 10052
BCLllA-8338 + GGAGGCAAAAGGCGAU UGU 19 10053
BCLllA-8339 + AGGAGGCAAAAGGCGAUUGU 20 10054
BCLllA-8340 + GAGGAGGCAAAAGGCGAUUGU 21 10055
BCLllA-8341 + CGAGGAGGCAAAAGGCGAUUGU 22 10056
BCLllA-8342 + ACGAGGAGGCAAAAGGCGAUUGU 23 10057
BCLllA-8343 + GACGAGGAGGCAAAAGGCGAUUGU 24 10058
BCLllA-8344 + CAAAUUUUCUCAGAACU U 18 10059
BCLllA-8345 + UCAAAUUUUCUCAGAACUU 19 10060
BCLllA-8346 + UUCAAAUUUUCUCAGAACUU 20 10061 BCLllA-8347 + CUUCAAAUUUUCUCAGAACUU 21 10062
BCLllA-8348 + GCUUCAAAUUUUCUCAGAACUU 22 10063
BCLllA-8349 + GGCU UCAAAUUUUCUCAGAACUU 23 10064
BCLllA-8350 + GGGCUUCAAAUUUUCUCAGAACUU 24 10065
BCLllA-8351 + CGCUGCGUCUGCCCUCU U 18 10066
BCLllA-8352 + UCGCUGCGUCUGCCCUCUU 19 10067
BCLllA-8353 + GUCGCUGCGUCUGCCCUCUU 20 10068
BCLllA-8354 + UGUCGCUGCGUCUGCCCUCUU 21 10069
BCLllA-8355 + GUGUCGCUGCGUCUGCCCUCUU 22 10070
BCLllA-8356 + AGUGUCGCUGCGUCUGCCCUCUU 23 10071
BCLllA-8357 + AAGUGUCGCUGCGUCUGCCCUCUU 24 10072
BCLllA-8358 + AGUCGCUGGUGCCGGGUU 18 10073
BCLllA-8359 + AAGUCGCUGGUGCCGGGUU 19 10074
BCLllA-8360 + CAAGUCGCUGGUGCCGGGUU 20 10075
BCLllA-8361 + CCAAGUCGCUGGUGCCGGGUU 21 10076
BCLllA-8362 + ACCAAGUCGCUGGUGCCGGGUU 22 10077
BCLllA-8363 + CACCAAGUCGCUGGUGCCGGGUU 23 10078
BCLllA-8364 + CCACCAAGUCGCUGGUGCCGGGUU 24 10079
BCLllA-8365 + CUGCCCAGCAGCAGCU UU 18 10080
BCLllA-8366 + GCUGCCCAGCAGCAGCUUU 19 10081
BCLllA-8367 + GGCUGCCCAGCAGCAGCUUU 20 10082
BCLllA-8368 + GGGCUGCCCAGCAGCAGCUUU 21 10083
BCLllA-8369 + GGGGCUGCCCAGCAGCAGCUUU 22 10084
BCLllA-8370 + UGGGGCUGCCCAGCAGCAGCUUU 23 10085
BCLllA-8371 + CUGGGGCUGCCCAGCAGCAGCUUU 24 10086
BCLllA-8372 - GGCAGGCCCAGCU C A A A A 18 10087
BCLllA-8373 - GGGCAGGCCCAGCUCAAAA 19 10088
BCLllA-8374 - CGGGCAGGCCCAGCU C A A A A 20 10089
BCLllA-8375 - CCGGGCAGGCCCAGCUCAAAA 21 10090
BCLllA-8376 - CCCGGGCAGGCCCAGCUCAAAA 22 10091
BCLllA-8377 - GCCCGGGCAGGCCCAGCUCAAAA 23 10092
BCLllA-8378 - GGCCCGGGCAGGCCCAGCUCAAAA 24 10093
BCLllA-8379 - UAAGAAUCUACUUAGAAA 18 10094
BCLllA-8380 - U UAAGAAUCUACUUAGAAA 19 10095
BCLllA-8381 - AU U AAG AAU CU ACU U AG AAA 20 10096
BCLllA-8382 - GAUUAAGAAUCUACUUAGAAA 21 10097
BCLllA-8383 - GGAUUAAGAAUCUACU UAGAAA 22 10098
BCLllA-8384 - UGGAUUAAGAAUCUACUUAGAAA 23 10099
BCLllA-8385 - AUGGAUUAAGAAUCUACUUAGAAA 24 10100
BCLllA-8386 - CGGGCAGGCCCAGCUCAA 18 10101
BCLllA-8387 - CCGGGCAGGCCCAGCUCAA 19 10102
BCLllA-8388 - CCCGGGCAGGCCCAGCUCAA 20 10103 BCLllA-8389 - GCCCGGGCAGGCCCAGCUCAA 21 10104
BCLllA-8390 - GGCCCGGGCAGGCCCAGCUCAA 22 10105
BCLllA-8391 - GGGCCCGGGCAGGCCCAGCUCAA 23 10106
BCLllA-8392 - CGGGCCCGGGCAGGCCCAGCUCAA 24 10107
BCLllA-8393 - GACGAGGAAGAGGAAGAA 18 10108
BCLllA-8394 - CGACGAGGAAGAGGAAGAA 19 10109
BCLllA-3947 - ACGACGAGGAAGAGGAAGAA 20 10110
BCLllA-8395 - GACGACGAGGAAGAGGAAGAA 21 10111
BCLllA-8396 - GGACGACGAGGAAGAGGAAGAA 22 10112
BCLllA-8397 - AGGACGACGAGGAAGAGGAAGAA 23 10113
BCLllA-8398 - GAGGACGACGAGGAAGAGGAAGAA 24 10114
BCLllA-8399 - CAACCUGAUCCCGGAGAA 18 10115
BCLllA-8400 - CCAACCUGAUCCCGGAGAA 19 10116
BCLllA-5881 - CCCAACCUGAUCCCGGAGAA 20 10117
BCLllA-8401 - CCCCAACCUGAUCCCGGAGAA 21 10118
BCLllA-8402 - ACCCCAACCUGAUCCCGGAGAA 22 10119
BCLllA-8403 - GACCCCAACCUGAUCCCGGAGAA 23 10120
BCLllA-8404 - CGACCCCAACCUGAUCCCGGAGAA 24 10121
BCLllA-8405 - GGAGCACUCCUCGGAGAA 18 10122
BCLllA-8406 - CGGAGCACUCCUCGGAGAA 19 10123
BCLllA-5882 - UCGGAGCACUCCUCGGAGAA 20 10124
BCLllA-8407 - GUCGGAGCACUCCUCGGAGAA 21 10125
BCLllA-8408 - CGUCGGAGCACUCCUCGGAGAA 22 10126
BCLllA-8409 - UCGUCGGAGCACUCCUCGGAGAA 23 10127
BCLllA-8410 - CUCGUCGGAGCACUCCUCGGAGAA 24 10128
BCLllA-8411 - GAGGAGGACGACGAGGAA 18 10129
BCLllA-8412 - AGAGGAGGACGACGAGGAA 19 10130
BCLllA-3950 - AAGAGGAGGACGACGAGGAA 20 10131
BCLllA-8413 - GAAGAGGAGGACGACGAGGAA 21 10132
BCLllA-8414 - GGAAGAGGAGGACGACGAGGAA 22 10133
BCLllA-8415 - AGGAAGAGGAGGACGACGAGGAA 23 10134
BCLllA-8416 - GAGGAAGAGGAGGACGACGAGGAA 24 10135
BCLllA-8417 - GAGGAAGAAGAGGAGGAA 18 10136
BCLllA-8418 - AGAGGAAGAAGAGGAGGAA 19 10137
BCLllA-3962 - AAGAGGAAGAAGAGGAGGAA 20 10138
BCLllA-8419 - GAAGAGGAAGAAGAGGAGGAA 21 10139
BCLllA-8420 - GGAAGAGGAAGAAGAGGAGGAA 22 10140
BCLllA-8421 - AGGAAGAGGAAGAAGAGGAGGAA 23 10141
BCLllA-8422 - GAGGAAGAGGAAGAAGAGGAGGAA 24 10142
BCLllA-8423 - AACGGGGACGAGGAGGAA 18 10143
BCLllA-8424 - GAACGGGGACGAGGAGGAA 19 10144
BCLllA-3934 - AGAACGGGGACGAGGAGGAA 20 10145 BCLllA-8425 - GAGAACGGGGACGAGGAGGAA 21 10146
BCLllA-8426 - GGAGAACGGGGACGAGGAGGAA 22 10147
BCLllA-8427 - CGGAGAACGGGGACGAGGAGGAA 23 10148
BCLllA-8428 - CCGGAGAACGGGGACGAGGAGGAA 24 10149
BCLllA-8429 - GGCGCAGCGGCACGGGAA 18 10150
BCLllA-8430 - GGGCGCAGCGGCACGGGAA 19 10151
BCLllA-3857 - GGGGCGCAGCGGCACGGGAA 20 10152
BCLllA-8431 - CGGGGCGCAGCGGCACGGGAA 21 10153
BCLllA-8432 - UCGGGGCGCAGCGGCACGGGAA 22 10154
BCLllA-8433 - CUCGGGGCGCAGCGGCACGGGAA 23 10155
BCLllA-8434 - UCUCGGGGCGCAGCGGCACGGGAA 24 10156
BCLllA-8435 - CGGCCGCGAUGCCCAACA 18 10157
BCLllA-8436 - CCGGCCGCGAUGCCCAACA 19 10158
BCLllA-5893 - CCCGGCCGCGAUGCCCAACA 20 10159
BCLllA-8437 - CCCCGGCCGCGAUGCCCAACA 21 10160
BCLllA-8438 - CCCCCGGCCGCGAUGCCCAACA 22 10161
BCLllA-8439 - GCCCCCGGCCGCGAUGCCCAACA 23 10162
BCLllA-8440 - UGCCCCCGGCCGCGAUGCCCAACA 24 10163
BCLllA-8441 - CUACUUAGAAAGCGAACA 18 10164
BCLllA-8442 - U CU ACU U AG AAAG CG AACA 19 10165
BCLllA-5894 - AUCUACUUAGAAAGCGAACA 20 10166
BCLllA-8443 - AAUCUACUUAGAAAGCGAACA 21 10167
BCLllA-8444 - GAAUCUACUUAGAAAGCGAACA 22 10168
BCLllA-8445 - AGAAUCUACUUAGAAAGCGAACA 23 10169
BCLllA-8446 - AAGAAUCUACUUAGAAAGCGAACA 24 10170
BCLllA-8447 - CCCCUGUUUAGUCCACCA 18 10171
BCLllA-8448 - CCCCCUGUUUAGUCCACCA 19 10172
BCLllA-8449 - CCCCCCUGUUUAGUCCACCA 20 10173
BCLllA-8450 - CCCCCCCUGUUUAGUCCACCA 21 10174
BCLllA-8451 - UCCCCCCCUGUUUAGUCCACCA 22 10175
BCLllA-8452 - CUCCCCCCCUGUUUAGUCCACCA 23 10176
BCLllA-8453 - ACUCCCCCCCUGUUUAGUCCACCA 24 10177
BCLllA-8454 - CAUUCGGCGUAGUACCCA 18 10178
BCLllA-8455 - CCAUUCGGCGUAGUACCCA 19 10179
BCLllA-8456 - CCCAUUCGGCGUAGUACCCA 20 10180
BCLllA-8457 - CCCCAUUCGGCGUAGUACCCA 21 10181
BCLllA-8458 - CCCCCAUUCGGCGUAGUACCCA 22 10182
BCLllA-8459 - ACCCCCAUUCGGCGUAGUACCCA 23 10183
BCLllA-8460 - CACCCCCAUUCGGCGUAGUACCCA 24 10184
BCLllA-8461 - GGCCGAGGCCGAGGGCCA 18 10185
BCLllA-8462 - UGGCCGAGGCCGAGGGCCA 19 10186
BCLllA-8463 - CUGGCCGAGGCCGAGGGCCA 20 10187 BCLllA-8464 - CCUGGCCGAGGCCGAGGGCCA 21 10188
BCLllA-8465 - ACCUGGCCGAGGCCGAGGGCCA 22 10189
BCLllA-8466 - CACCUGGCCGAGGCCGAGGGCCA 23 10190
BCLllA-8467 - CCACCUGGCCGAGGCCGAGGGCCA 24 10191
BCLllA-8468 - UUUCUCUUGCAACACGCA 18 10192
BCLllA-8469 - GUUUCUCUUGCAACACGCA 19 10193
BCLllA-8470 - GGUUUCUCUUGCAACACGCA 20 10194
BCLllA-8471 - UGGUUUCUCUUGCAACACGCA 21 10195
BCLllA-8472 - AUGGUUUCUCUUGCAACACGCA 22 10196
BCLllA-8473 - CAUGGUUUCUCUUGCAACACGCA 23 10197
BCLllA-8474 - GCAUGGUUUCUCUUGCAACACGCA 24 10198
BCLllA-8475 - ACU UGG ACCCCCACCGCA 18 10199
BCLllA-8476 - CACUUGGACCCCCACCGCA 19 10200
BCLllA-8477 - UCACUUGGACCCCCACCGCA 20 10201
BCLllA-8478 - AUCACUUGGACCCCCACCGCA 21 10202
BCLllA-8479 - CAUCACUUGGACCCCCACCGCA 22 10203
BCLllA-8480 - ACAUCACUUGGACCCCCACCGCA 23 10204
BCLllA-8481 - GACAUCACUUGGACCCCCACCGCA 24 10205
BCLllA-8482 - UCUCGGGGCGCAGCGGCA 18 10206
BCLllA-8483 - AUCUCGGGGCGCAGCGGCA 19 10207
BCLllA-5904 - GAUCUCGGGGCGCAGCGGCA 20 10208
BCLllA-8484 - GGAUCUCGGGGCGCAGCGGCA 21 10209
BCLllA-8485 - GGGAUCUCGGGGCGCAGCGGCA 22 10210
BCLllA-8486 - AGGGAUCUCGGGGCGCAGCGGCA 23 10211
BCLllA-8487 - GAGGGAUCUCGGGGCGCAGCGGCA 24 10212
BCLllA-8488 - AGACUUAGAGAGCUGGCA 18 10213
BCLllA-8489 - GAGACUUAGAGAGCUGGCA 19 10214
BCLllA-5907 - GGAGACUUAGAGAGCUGGCA 20 10215
BCLllA-8490 - AGGAGACUUAGAGAGCUGGCA 21 10216
BCLllA-8491 - UAGGAGACUUAGAGAGCUGGCA 22 10217
BCLllA-8492 - CUAGGAGACUUAGAGAGCUGGCA 23 10218
BCLllA-8493 - UCUAGGAGACUUAGAGAGCUGGCA 24 10219
BCLllA-8494 - GCUCCAUGCAGCACUUCA 18 10220
BCLllA-8495 - AGCUCCAUGCAGCACUUCA 19 10221
BCLllA-8496 - CAGCUCCAUGCAGCACUUCA 20 10222
BCLllA-8497 - UCAGCUCCAUGCAGCACUUCA 21 10223
BCLllA-8498 - CUCAGCUCCAUGCAGCACUUCA 22 10224
BCLllA-8499 - GCUCAGCUCCAUGCAGCACUUCA 23 10225
BCLllA-8500 - UGCUCAGCUCCAUGCAGCACUUCA 24 10226
BCLllA-8501 - UGGUGGCCAAGUUCAAGA 18 10227
BCLllA-8502 - G U GG UGG CCAAG U U CAAGA 19 10228
BCLllA-8503 - CGUGGUGGCCAAGUUCAAGA 20 10229 BCLllA-8504 - CCGUGGUGGCCAAGUUCAAGA 21 10230
BCLllA-8505 - UCCGUGGUGGCCAAGUUCAAGA 22 10231
BCLllA-8506 - GUCCGUGGUGGCCAAGUUCAAGA 23 10232
BCLllA-8507 - AGUCCGUGGUGGCCAAGUUCAAGA 24 10233
BCLllA-8508 - AGGAGGAGCUGACGGAGA 18 10234
BCLllA-8509 - GAGGAGGAGCUGACGGAGA 19 10235
BCLllA-8510 - GGAGGAGGAGCUGACGGAGA 20 10236
BCLllA-8511 - AGGAGGAGGAGCUGACGGAGA 21 10237
BCLllA-8512 - GAGGAGGAGGAGCUGACGGAGA 22 10238
BCLllA-8513 - GGAGGAGGAGGAGCUGACGGAGA 23 10239
BCLllA-8514 - AGGAGGAGGAGGAGCUGACGGAGA 24 10240
BCLllA-8515 - CCAACCUGAUCCCGGAGA 18 10241
BCLllA-8516 - CCCAACCUGAUCCCGGAGA 19 10242
BCLllA-8517 - CCCCAACCUGAUCCCGGAGA 20 10243
BCLllA-8518 - ACCCCAACCUGAUCCCGGAGA 21 10244
BCLllA-8519 - GACCCCAACCUGAUCCCGGAGA 22 10245
BCLllA-8520 - CGACCCCAACCUGAUCCCGGAGA 23 10246
BCLllA-8521 - ACGACCCCAACCUGAUCCCGGAGA 24 10247
BCLllA-8522 - CGGAGCACUCCUCGGAGA 18 10248
BCLllA-8523 - UCGGAGCACUCCUCGGAGA 19 10249
BCLllA-8524 - GUCGGAGCACUCCUCGGAGA 20 10250
BCLllA-8525 - CGUCGGAGCACUCCUCGGAGA 21 10251
BCLllA-8526 - UCGUCGGAGCACUCCUCGGAGA 22 10252
BCLllA-8527 - CUCGUCGGAGCACUCCUCGGAGA 23 10253
BCLllA-8528 - CCUCGUCGGAGCACUCCUCGGAGA 24 10254
BCLllA-8529 - UACCAGGAUCAGUAUCGA 18 10255
BCLllA-8530 - AUACCAGGAUCAGUAUCGA 19 10256
BCLllA-8531 - AAUACCAGGAUCAGUAUCGA 20 10257
BCLllA-8532 - GAAUACCAGGAUCAGUAUCGA 21 10258
BCLllA-8533 - AGAAUACCAGGAUCAGUAUCGA 22 10259
BCLllA-8534 - AAGAAUACCAGGAUCAGUAUCGA 23 10260
BCLllA-8535 - UAAGAAUACCAGGAUCAGUAUCGA 24 10261
BCLllA-8536 - UGUGUGGCAGUUUUCGGA 18 10262
BCLllA-8537 - AUGUGUGGCAGUUUUCGGA 19 10263
BCLllA-5929 - GAUGUGUGGCAGUUUUCGGA 20 10264
BCLllA-8538 - AGAUGUGUGGCAGUUUUCGGA 21 10265
BCLllA-8539 - AAGAUGUGUGGCAGUUUUCGGA 22 10266
BCLllA-8540 - CAAGAUGUGUGGCAGUUUUCGGA 23 10267
BCLllA-8541 - UCAAGAUGUGUGGCAGUUUUCGGA 24 10268
BCLllA-8542 - ACCGCCCGGGGAGCUGGA 18 10269
BCLllA-8543 - CACCGCCCGGGGAGCUGGA 19 10270
BCLllA-5933 - ACACCGCCCGGGGAGCUGGA 20 10271 BCLllA-8544 - CACACCGCCCGGGGAGCUGGA 21 10272
BCLllA-8545 - CCACACCGCCCGGGGAGCUGGA 22 10273
BCLllA-8546 - UCCACACCGCCCGGGGAGCUGGA 23 10274
BCLllA-8547 - CUCCACACCGCCCGGGGAGCUGGA 24 10275
BCLllA-8548 - AGCGGCACGGGAAGUGGA 18 10276
BCLllA-8549 - CAGCGGCACGGGAAGUGGA 19 10277
BCLllA-5934 - GCAGCGGCACGGGAAGUGGA 20 10278
BCLllA-8550 - CGCAGCGGCACGGGAAGUGGA 21 10279
BCLllA-8551 - GCGCAGCGGCACGGGAAGUGGA 22 10280
BCLllA-8552 - GGCGCAGCGGCACGGGAAGUGGA 23 10281
BCLllA-8553 - GGGCGCAGCGGCACGGGAAGUGGA 24 10282
BCLllA-8554 - AGGAGGAGGAGGAGCUGA 18 10283
BCLllA-8555 - GAGGAGGAGGAGGAGCUGA 19 10284
BCLllA-5938 - AGAGGAGGAGGAGGAGCUGA 20 10285
BCLllA-8556 - AAGAGGAGGAGGAGGAGCUGA 21 10286
BCLllA-8557 - GAAGAGGAGGAGGAGGAGCUGA 22 10287
BCLllA-8558 - GGAAGAGGAGGAGGAGGAGCUGA 23 10288
BCLllA-8559 - AGGAAGAGGAGGAGGAGGAGCUGA 24 10289
BCLllA-8560 - GGUUGAAUCCAAUGGCUA 18 10290
BCLllA-8561 - CGGUUGAAUCCAAUGGCUA 19 10291
BCLllA-5944 - GCGGUUGAAUCCAAUGGCUA 20 10292
BCLllA-8562 - UGCGGUUGAAUCCAAUGGCUA 21 10293
BCLllA-8563 - CUGCGGUUGAAUCCAAUGGCUA 22 10294
BCLllA-8564 - GCUGCGGUUGAAUCCAAUGGCUA 23 10295
BCLllA-8565 - UGCUGCGGUUGAAUCCAAUGGCUA 24 10296
BCLllA-8566 - AGAAUACCAGGAUCAGUA 18 10297
BCLllA-8567 - AAGAAUACCAGGAUCAGUA 19 10298
BCLllA-8568 - UAAGAAUACCAGGAUCAGUA 20 10299
BCLllA-8569 - CUAAGAAUACCAGGAUCAGUA 21 10300
BCLllA-8570 - G CU AAG AAU ACCAGG AU CAG U A 22 10301
BCLllA-8571 - UGCU AAGAAUACCAGGAUCAGUA 23 10302
BCLllA-8572 - CUGCUAAGAAUACCAGGAUCAGUA 24 10303
BCLllA-8573 - AUUUCUCUAGGAGACUUA 18 10304
BCLllA-8574 - GAUUUCUCUAGGAGACUUA 19 10305
BCLllA-8575 - GGAUUUCUCUAGGAGACUUA 20 10306
BCLllA-8576 - UGGAUUUCUCUAGGAGACUUA 21 10307
BCLllA-8577 - AUGGAUUUCUCUAGGAGACUUA 22 10308
BCLllA-8578 - CAUGGAUUUCUCUAGGAGACUUA 23 10309
BCLllA-8579 - CCAUGGAUUUCUCUAGGAGACUUA 24 10310
BCLllA-8580 - CCGGCCGCGAUGCCCAAC 18 10311
BCLllA-8581 - CCCGGCCGCGAUGCCCAAC 19 10312
BCLllA-8582 - CCCCGGCCGCGAUGCCCAAC 20 10313 BCLllA-8583 - CCCCCGGCCGCGAUGCCCAAC 21 10314
BCLllA-8584 - GCCCCCGGCCGCGAUGCCCAAC 22 10315
BCLllA-8585 - UGCCCCCGGCCGCGAUGCCCAAC 23 10316
BCLllA-8586 - CUGCCCCCGGCCGCGAUGCCCAAC 24 10317
BCLllA-8587 - AACCUGAUCCCGGAGAAC 18 10318
BCLllA-8588 - CAACCUGAUCCCGGAGAAC 19 10319
BCLllA-5948 - CCAACCUGAUCCCGGAGAAC 20 10320
BCLllA-8589 - CCCAACCUGAUCCCGGAGAAC 21 10321
BCLllA-8590 - CCCCAACCUGAUCCCGGAGAAC 22 10322
BCLllA-8591 - ACCCCAACCUGAUCCCGGAGAAC 23 10323
BCLllA-8592 - GACCCCAACCUGAUCCCGGAGAAC 24 10324
BCLllA-8593 - UCUACUUAGAAAGCGAAC 18 10325
BCLllA-8594 - AUCUACUUAGAAAGCGAAC 19 10326
BCLllA-8595 - AAUCUACUUAGAAAGCGAAC 20 10327
BCLllA-8596 - GAAUCUACUUAGAAAGCGAAC 21 10328
BCLllA-8597 - AGAAUCUACUUAGAAAGCGAAC 22 10329
BCLllA-8598 - AAGAAUCUACUUAGAAAGCGAAC 23 10330
BCLllA-8599 - UAAGAAUCUACUUAGAAAGCGAAC 24 10331
BCLllA-8600 - GAGGCGGCGCGCCACCAC 18 10332
BCLllA-8601 - GGAGGCGGCGCGCCACCAC 19 10333
BCLllA-8602 - UGGAGGCGGCGCGCCACCAC 20 10334
BCLllA-8603 - CUGGAGGCGGCGCGCCACCAC 21 10335
BCLllA-8604 - CCUGGAGGCGGCGCGCCACCAC 22 10336
BCLllA-8605 - GCCUGGAGGCGGCGCGCCACCAC 23 10337
BCLllA-8606 - AGCCUGGAGGCGGCGCGCCACCAC 24 10338
BCLllA-8607 - GUGCACCGGCGCAGCCAC 18 10339
BCLllA-8608 - GGUGCACCGGCGCAGCCAC 19 10340
BCLllA-8609 - UGGUGCACCGGCGCAGCCAC 20 10341
BCLllA-8610 - GUGGUGCACCGGCGCAGCCAC 21 10342
BCLllA-8611 - GGUGGUGCACCGGCGCAGCCAC 22 10343
BCLllA-8612 - UGGUGGUGCACCGGCGCAGCCAC 23 10344
BCLllA-8613 - CUGGUGGUGCACCGGCGCAGCCAC 24 10345
BCLllA-8614 - AG CA AG C UGAAG CG CCAC 18 10346
BCLllA-8615 - CAG CA AG C UGAAG CG CC AC 19 10347
BCLllA-8616 - CCAGCAAGCUGAAGCGCCAC 20 10348
BCLllA-8617 - GCCAGCAAGCUGAAGCGCCAC 21 10349
BCLllA-8618 - GG CCAGCAAG CU G AAG CGCCAC 22 10350
BCLllA-8619 - AG G CC AG CAAG CU G AAG CG CC AC 23 10351
BCLllA-8620 - CAGGCCAGCAAGCUGAAGCGCCAC 24 10352
BCLllA-8621 - GCCGAGGCCGAGGGCCAC 18 10353
BCLllA-8622 - GGCCGAGGCCGAGGGCCAC 19 10354
BCLllA-5951 - UGGCCGAGGCCGAGGGCCAC 20 10355 BCLllA-8623 - CUGGCCGAGGCCGAGGGCCAC 21 10356
BCLllA-8624 - CCUGGCCGAGGCCGAGGGCCAC 22 10357
BCLllA-8625 - ACCUGGCCGAGGCCGAGGGCCAC 23 10358
BCLllA-8626 - CACCUGGCCGAGGCCGAGGGCCAC 24 10359
BCLllA-8627 - CUCGGGGCGCAGCGGCAC 18 10360
BCLllA-8628 - UCUCGGGGCGCAGCGGCAC 19 10361
BCLllA-5953 - AUCUCGGGGCGCAGCGGCAC 20 10362
BCLllA-8629 - GAUCUCGGGGCGCAGCGGCAC 21 10363
BCLllA-8630 - GGAUCUCGGGGCGCAGCGGCAC 22 10364
BCLllA-8631 - GGGAUCUCGGGGCGCAGCGGCAC 23 10365
BCLllA-8632 - AGGGAUCUCGGGGCGCAGCGGCAC 24 10366
BCLllA-8633 - CCACCACCGAGACAUCAC 18 10367
BCLllA-8634 - UCCACCACCGAGACAUCAC 19 10368
BCLllA-8635 - GUCCACCACCGAGACAUCAC 20 10369
BCLllA-8636 - AGUCCACCACCGAGACAUCAC 21 10370
BCLllA-8637 - UAGUCCACCACCGAGACAUCAC 22 10371
BCLllA-8638 - UUAGUCCACCACCGAGACAUCAC 23 10372
BCLllA-8639 - UUUAGUCCACCACCGAGACAUCAC 24 10373
BCLllA-8640 - GAGGAAGAGGAGGACGAC 18 10374
BCLllA-8641 - GGAGGAAGAGGAGGACGAC 19 10375
BCLllA-3949 - AGGAGGAAGAGGAGGACGAC 20 10376
BCLllA-8642 - GAGGAGGAAGAGGAGGACGAC 21 10377
BCLllA-8643 - CGAGGAGGAAGAGGAGGACGAC 22 10378
BCLllA-8644 - ACGAGGAGGAAGAGGAGGACGAC 23 10379
BCLllA-8645 - GACGAGGAGGAAGAGGAGGACGAC 24 10380
BCLllA-8646 - GUCGUGGGCGUGGGCGAC 18 10381
BCLllA-8647 - GGUCGUGGGCGUGGGCGAC 19 10382
BCLllA-8648 - CGGUCGUGGGCGUGGGCGAC 20 10383
BCLllA-8649 - GCGGUCGUGGGCGUGGGCGAC 21 10384
BCLllA-8650 - CGCGGUCGUGGGCGUGGGCGAC 22 10385
BCLllA-8651 - GCGCGGUCGUGGGCGUGGGCGAC 23 10386
BCLllA-8652 - GGCGCGGUCGUGGGCGUGGGCGAC 24 10387
BCLllA-8653 - AUCCCGGAGAACGGGGAC 18 10388
BCLllA-8654 - GAUCCCGGAGAACGGGGAC 19 10389
BCLllA-8655 - UGAUCCCGGAGAACGGGGAC 20 10390
BCLllA-8656 - CUGAUCCCGGAGAACGGGGAC 21 10391
BCLllA-8657 - CCUGAUCCCGGAGAACGGGGAC 22 10392
BCLllA-8658 - ACCUGAUCCCGGAGAACGGGGAC 23 10393
BCLllA-8659 - AACCUGAUCCCGGAGAACGGGGAC 24 10394
BCLllA-8660 - UGGAGGCGGCGCGCCACC 18 10395
BCLllA-8661 - CUGGAGGCGGCGCGCCACC 19 10396
BCLllA-8662 - CCUGGAGGCGGCGCGCCACC 20 10397 BCLllA-8663 - GCCUGGAGGCGGCGCGCCACC 21 10398
BCLllA-8664 - AGCCUGGAGGCGGCGCGCCACC 22 10399
BCLllA-8665 - GAGCCUGGAGGCGGCGCGCCACC 23 10400
BCLllA-8666 - UGAGCCUGGAGGCGGCGCGCCACC 24 10401
BCLllA-8667 - CCCAUUCGGCGUAGUACC 18 10402
BCLllA-8668 - CCCCAUUCGGCGUAGUACC 19 10403
BCLllA-8669 - CCCCCAUUCGGCGUAGUACC 20 10404
BCLllA-8670 - ACCCCCAUUCGGCGUAGUACC 21 10405
BCLllA-8671 - CACCCCCAUUCGGCGUAGUACC 22 10406
BCLllA-8672 - ACACCCCCAUUCGGCGUAGUACC 23 10407
BCLllA-8673 - CACACCCCCAUUCGGCGUAGUACC 24 10408
BCLllA-8674 - G AG AAAAU U UG AAG CCCC 18 10409
BCLllA-8675 - UGAGAAAAUUUGAAGCCCC 19 10410
BCLllA-8676 - CUGAGAAAAUUUGAAGCCCC 20 10411
BCLllA-8677 - UCUGAGAAAAUUUGAAGCCCC 21 10412
BCLllA-8678 - UUCUGAGAAAAUUUGAAGCCCC 22 10413
BCLllA-8679 - GU UCUGAGAAAAUUUGAAGCCCC 23 10414
BCLllA-8680 - AGUUCUGAGAAAAUUUGAAGCCCC 24 10415
BCLllA-8681 - CGCUUCUCCACACCGCCC 18 10416
BCLllA-8682 - GCGCUUCUCCACACCGCCC 19 10417
BCLllA-5976 - UGCGCUUCUCCACACCGCCC 20 10418
BCLllA-8683 - UUGCGCUUCUCCACACCGCCC 21 10419
BCLllA-8684 - UUUGCGCUUCUCCACACCGCCC 22 10420
BCLllA-8685 - GUUUGCGCUUCUCCACACCGCCC 23 10421
BCLllA-8686 - AGUUUGCGCUUCUCCACACCGCCC 24 10422
BCLllA-8687 - UCUCCACCGCCAGCUCCC 18 10423
BCLllA-8688 - CUCUCCACCGCCAGCUCCC 19 10424
BCLllA-5982 - UCUCUCCACCGCCAGCUCCC 20 10425
BCLllA-8689 - GUCUCUCCACCGCCAGCUCCC 21 10426
BCLllA-8690 - GGUCUCUCCACCGCCAGCUCCC 22 10427
BCLllA-8691 - CGGUCUCUCCACCGCCAGCUCCC 23 10428
BCLllA-8692 - ACGGUCUCUCCACCGCCAGCUCCC 24 10429
BCLllA-8693 - ACGGCUUCGGGCUGAGCC 18 10430
BCLllA-8694 - UACGGCUUCGGGCUGAGCC 19 10431
BCLllA-5986 - CUACGGCUUCGGGCUGAGCC 20 10432
BCLllA-8695 - ACUACGGCUUCGGGCUGAGCC 21 10433
BCLllA-8696 - GACUACGGCUUCGGGCUGAGCC 22 10434
BCLllA-8697 - GGACUACGGCUUCGGGCUGAGCC 23 10435
BCLllA-8698 - UGGACUACGGCUUCGGGCUGAGCC 24 10436
BCLllA-8699 - GCGCUUCUCCACACCGCC 18 10437
BCLllA-8700 - UGCGCUUCUCCACACCGCC 19 10438
BCLllA-5987 - UUGCGCUUCUCCACACCGCC 20 10439 BCLllA-8701 - UUUGCGCUUCUCCACACCGCC 21 10440
BCLllA-8702 - GUUUGCGCUUCUCCACACCGCC 22 10441
BCLllA-8703 - AGUUUGCGCUUCUCCACACCGCC 23 10442
BCLllA-8704 - GAGUUUGCGCUUCUCCACACCGCC 24 10443
BCLllA-8705 - CCCACCGCAUAGAGCGCC 18 10444
BCLllA-8706 - CCCCACCGCAUAGAGCGCC 19 10445
BCLllA-5988 - CCCCCACCGCAUAGAGCGCC 20 10446
BCLllA-8707 - ACCCCCACCGCAUAGAGCGCC 21 10447
BCLllA-8708 - GACCCCCACCGCAUAGAGCGCC 22 10448
BCLllA-8709 - GGACCCCCACCGCAUAGAGCGCC 23 10449
BCLllA-8710 - UGGACCCCCACCGCAUAGAGCGCC 24 10450
BCLllA-8711 - GGCCACCUGGCCGAGGCC 18 10451
BCLllA-8712 - CGGCCACCUGGCCGAGGCC 19 10452
BCLllA-8713 - GCGGCCACCUGGCCGAGGCC 20 10453
BCLllA-8714 - CGCGGCCACCUGGCCGAGGCC 21 10454
BCLllA-8715 - GCGCGGCCACCUGGCCGAGGCC 22 10455
BCLllA-8716 - AGCGCGGCCACCUGGCCGAGGCC 23 10456
BCLllA-8717 - AAGCGCGGCCACCUGGCCGAGGCC 24 10457
BCLllA-8718 - UCCCCGGGCGAGUCGGCC 18 10458
BCLllA-8719 - CUCCCCGGGCGAGUCGGCC 19 10459
BCLllA-8720 - GCUCCCCGGGCGAGUCGGCC 20 10460
BCLllA-8721 - UGCUCCCCGGGCGAGUCGGCC 21 10461
BCLllA-8722 - CUGCUCCCCGGGCGAGUCGGCC 22 10462
BCLllA-8723 - GCUGCUCCCCGGGCGAGUCGGCC 23 10463
BCLllA-8724 - GGCUGCUCCCCGGGCGAGUCGGCC 24 10464
BCLllA-8725 - ACGACCCCAACCUGAUCC 18 10465
BCLllA-8726 - AACGACCCCAACCUGAUCC 19 10466
BCLllA-6004 - GAACGACCCCAACCUGAUCC 20 10467
BCLllA-8727 - AGAACGACCCCAACCUGAUCC 21 10468
BCLllA-8728 - GAGAACGACCCCAACCUGAUCC 22 10469
BCLllA-8729 - CGAGAACGACCCCAACCUGAUCC 23 10470
BCLllA-8730 - GCGAGAACGACCCCAACCUGAUCC 24 10471
BCLllA-8731 - UCCUCGUCGGAGCACUCC 18 10472
BCLllA-8732 - CUCCUCGUCGGAGCACUCC 19 10473
BCLllA-8733 - CCUCCUCGUCGGAGCACUCC 20 10474
BCLllA-8734 - GCCUCCUCGUCGGAGCACUCC 21 10475
BCLllA-8735 - UGCCUCCUCGUCGGAGCACUCC 22 10476
BCLllA-8736 - UUGCCUCCUCGUCGGAGCACUCC 23 10477
BCLllA-8737 - UUUGCCUCCUCGUCGGAGCACUCC 24 10478
BCLllA-8738 - CUCUCCACCGCCAGCUCC 18 10479
BCLllA-8739 - UCUCUCCACCGCCAGCUCC 19 10480
BCLllA-8740 - GUCUCUCCACCGCCAGCUCC 20 10481 BCLllA-8741 - GGUCUCUCCACCGCCAGCUCC 21 10482
BCLllA-8742 - CGGUCUCUCCACCGCCAGCUCC 22 10483
BCLllA-8743 - ACGGUCUCUCCACCGCCAGCUCC 23 10484
BCLllA-8744 - GACGGUCUCUCCACCGCCAGCUCC 24 10485
BCLllA-8745 - AAUGGCCGCGGCUGCUCC 18 10486
BCLllA-8746 - UAAUGGCCGCGGCUGCUCC 19 10487
BCLllA-8747 - UUAAUGGCCGCGGCUGCUCC 20 10488
BCLllA-8748 - GUUAAUGGCCGCGGCUGCUCC 21 10489
BCLllA-8749 - UGUUAAUGGCCGCGGCUGCUCC 22 10490
BCLllA-8750 - CUGUUAAUGGCCGCGGCUGCUCC 23 10491
BCLllA-8751 - ACUGUUAAUGGCCGCGGCUGCUCC 24 10492
BCLllA-8752 - CUUCCCAGCCACCUCUCC 18 10493
BCLllA-8753 - CCUUCCCAGCCACCUCUCC 19 10494
BCLllA-8754 - UCCUUCCCAGCCACCUCUCC 20 10495
BCLllA-8755 - GUCCUUCCCAGCCACCUCUCC 21 10496
BCLllA-8756 - UGUCCUUCCCAGCCACCUCUCC 22 10497
BCLllA-8757 - AUGUCCUUCCCAGCCACCUCUCC 23 10498
BCLllA-8758 - AAUGUCCUUCCCAGCCACCUCUCC 24 10499
BCLllA-8759 - UCUCUAAGCGCAUCAAGC 18 10500
BCLllA-8760 - UUCUCUAAGCGCAUCAAGC 19 10501
BCLllA-8761 - CUUCUCUAAGCGCAUCAAGC 20 10502
BCLllA-8762 - CCUUCUCUAAGCGCAUCAAGC 21 10503
BCLllA-8763 - CCCUUCUCUAAGCGCAUCAAGC 22 10504
BCLllA-8764 - CCCCUUCUCUAAGCGCAUCAAGC 23 10505
BCLllA-8765 - GCCCCUUCUCUAAGCGCAUCAAGC 24 10506
BCLllA-8766 - CAGUUUUCGGAUGGAAGC 18 10507
BCLllA-8767 - GCAGUUUUCGGAUGGAAGC 19 10508
BCLllA-8768 - GGCAGUUUUCGGAUGGAAGC 20 10509
BCLllA-8769 - UGGCAGUUUUCGGAUGGAAGC 21 10510
BCLllA-8770 - GUGGCAGUUUUCGGAUGGAAGC 22 10511
BCLllA-8771 - UGUGGCAGUUUUCGGAUGGAAGC 23 10512
BCLllA-8772 - GUGUGGCAGUUUUCGGAUGGAAGC 24 10513
BCLllA-8773 - GUGGCCAAGUUCAAGAGC 18 10514
BCLllA-8774 - GGUGGCCAAGUUCAAGAGC 19 10515
BCLllA-8775 - UGGUGGCCAAGUUCAAGAGC 20 10516
BCLllA-8776 - G UGGUGGCCAAG U U CAAG AG C 21 10517
BCLllA-8777 - CGUGGUGGCCAAGUUCAAGAGC 22 10518
BCLllA-8778 - CCGUGGUGGCCAAGUUCAAGAGC 23 10519
BCLllA-8779 - UCCGUGGUGGCCAAGUUCAAGAGC 24 10520
BCLllA-8780 - GAGGAGCUGACGGAGAGC 18 10521
BCLllA-8781 - GGAGGAGCUGACGGAGAGC 19 10522
BCLllA-8782 - AGGAGGAGCUGACGGAGAGC 20 10523 BCLllA-8783 - GAGGAGGAGCUGACGGAGAGC 21 10524
BCLllA-8784 - GGAGGAGGAGCUGACGGAGAGC 22 10525
BCLllA-8785 - AGGAGGAGGAGCUGACGGAGAGC 23 10526
BCLllA-8786 - GAGGAGGAGGAGCUGACGGAGAGC 24 10527
BCLllA-8787 - UACGGCUUCGGGCUGAGC 18 10528
BCLllA-8788 - CUACGGCUUCGGGCUGAGC 19 10529
BCLllA-8789 - ACUACGGCUUCGGGCUGAGC 20 10530
BCLllA-8790 - GACUACGGCUUCGGGCUGAGC 21 10531
BCLllA-8791 - GGACUACGGCUUCGGGCUGAGC 22 10532
BCLllA-8792 - UGGACUACGGCUUCGGGCUGAGC 23 10533
BCLllA-8793 - GUGGACUACGGCUUCGGGCUGAGC 24 10534
BCLllA-8794 - UGCGCUUCUCCACACCGC 18 10535
BCLllA-8795 - UUGCGCUUCUCCACACCGC 19 10536
BCLllA-8796 - UUUGCGCUUCUCCACACCGC 20 10537
BCLllA-8797 - GUUUGCGCUUCUCCACACCGC 21 10538
BCLllA-8798 - AGUUUGCGCUUCUCCACACCGC 22 10539
BCLllA-8799 - GAGUUUGCGCUUCUCCACACCGC 23 10540
BCLllA-8800 - GGAGUUUGCGCUUCUCCACACCGC 24 10541
BCLllA-8801 - CCCCACCGCAUAGAGCGC 18 10542
BCLllA-8802 - CCCCCACCGCAUAGAGCGC 19 10543
BCLllA-8803 - ACCCCCACCGCAUAGAGCGC 20 10544
BCLllA-8804 - GACCCCCACCGCAUAGAGCGC 21 10545
BCLllA-8805 - GGACCCCCACCGCAUAGAGCGC 22 10546
BCLllA-8806 - UGGACCCCCACCGCAUAGAGCGC 23 10547
BCLllA-8807 - UUGGACCCCCACCGCAUAGAGCGC 24 10548
BCLllA-8808 - AUCUCGGGGCGCAGCGGC 18 10549
BCLllA-8809 - GAUCUCGGGGCGCAGCGGC 19 10550
BCLllA-8810 - GGAUCUCGGGGCGCAGCGGC 20 10551
BCLllA-8811 - GGGAUCUCGGGGCGCAGCGGC 21 10552
BCLllA-8812 - AGGGAUCUCGGGGCGCAGCGGC 22 10553
BCLllA-8813 - GAGGGAUCUCGGGGCGCAGCGGC 23 10554
BCLllA-8814 - GGAGGGAUCUCGGGGCGCAGCGGC 24 10555
BCLllA-8815 - CGGCGCAGCCACACGGGC 18 10556
BCLllA-8816 - CCGGCGCAGCCACACGGGC 19 10557
BCLllA-3804 - ACCGGCGCAGCCACACGGGC 20 10558
BCLllA-8817 - CACCGGCGCAGCCACACGGGC 21 10559
BCLllA-8818 - GCACCGGCGCAGCCACACGGGC 22 10560
BCLllA-8819 - UGCACCGGCGCAGCCACACGGGC 23 10561
BCLllA-8820 - GUGCACCGGCGCAGCCACACGGGC 24 10562
BCLllA-8821 - CAUAUUAGUGGUCCGGGC 18 10563
BCLllA-8822 - CCAUAUUAGUGGUCCGGGC 19 10564
BCLllA-8823 - CCCAUAUUAGUGGUCCGGGC 20 10565 BCLllA-8824 - CCCCAUAUUAGUGGUCCGGGC 21 10566
BCLllA-8825 - GCCCCAUAUUAGUGGUCCGGGC 22 10567
BCLllA-8826 - CGCCCCAUAUUAGUGGUCCGGGC 23 10568
BCLllA-8827 - ACGCCCCAUAUUAGUGGUCCGGGC 24 10569
BCLllA-8828 - UUCCACCAGGUCCUGGGC 18 10570
BCLllA-8829 - CUUCCACCAGGUCCUGGGC 19 10571
BCLllA-8830 - CCUUCCACCAGGUCCUGGGC 20 10572
BCLllA-8831 - GCCUUCCACCAGGUCCUGGGC 21 10573
BCLllA-8832 - GGCCUUCCACCAGGUCCUGGGC 22 10574
BCLllA-8833 - AGGCCUUCCACCAGGUCCUGGGC 23 10575
BCLllA-8834 - GAGGCCUUCCACCAGGUCCUGGGC 24 10576
BCLllA-8835 - CGGGGCGCGGUCGUGGGC 18 10577
BCLllA-8836 - GCGGGGCGCGGUCGUGGGC 19 10578
BCLllA-8837 - CGCGGGGCGCGGUCGUGGGC 20 10579
BCLllA-8838 - UCGCGGGGCGCGGUCGUGGGC 21 10580
BCLllA-8839 - CUCGCGGGGCGCGGUCGUGGGC 22 10581
BCLllA-8840 - GCUCGCGGGGCGCGGUCGUGGGC 23 10582
BCLllA-8841 - AGCUCGCGGGGCGCGGUCGUGGGC 24 10583
BCLllA-8842 - GAGACUUAGAGAGCUGGC 18 10584
BCLllA-8843 - GGAGACUUAGAGAGCUGGC 19 10585
BCLllA-6037 - AGGAGACUUAGAGAGCUGGC 20 10586
BCLllA-8844 - UAGGAGACUUAGAGAGCUGGC 21 10587
BCLllA-8845 - CUAGGAGACUUAGAGAGCUGGC 22 10588
BCLllA-8846 - UCUAGGAGACUUAGAGAGCUGGC 23 10589
BCLllA-8847 - CUCUAGGAGACUUAGAGAGCUGGC 24 10590
BCLllA-8848 - GAGCUGGACGGAGGGAUC 18 10591
BCLllA-8849 - GGAGCUGGACGGAGGGAUC 19 10592
BCLllA-8850 - GGGAGCUGGACGGAGGGAUC 20 10593
BCLllA-8851 - GGGGAGCUGGACGGAGGGAUC 21 10594
BCLllA-8852 - CGGGGAGCUGGACGGAGGGAUC 22 10595
BCLllA-8853 - CCGGGGAGCUGGACGGAGGGAUC 23 10596
BCLllA-8854 - CCCGGGGAGCUGGACGGAGGGAUC 24 10597
BCLllA-8855 - AACGACCCCAACCUGAUC 18 10598
BCLllA-8856 - GAACGACCCCAACCUGAUC 19 10599
BCLllA-8857 - AGAACGACCCCAACCUGAUC 20 10600
BCLllA-8858 - GAGAACGACCCCAACCUGAUC 21 10601
BCLllA-8859 - CGAGAACGACCCCAACCUGAUC 22 10602
BCLllA-8860 - GCGAGAACGACCCCAACCUGAUC 23 10603
BCLllA-8861 - AGCGAGAACGACCCCAACCUGAUC 24 10604
BCLllA-8862 - AAUACCAGGAUCAGUAUC 18 10605
BCLllA-8863 - GAAUACCAGGAUCAGUAUC 19 10606
BCLllA-8864 - AGAAUACCAGGAUCAGUAUC 20 10607 BCLllA-8865 - AAGAAUACCAGGAUCAGUAUC 21 10608
BCLllA-8866 - UAAGAAUACCAGGAUCAGUAUC 22 10609
BCLllA-8867 - CUAAGAAUACCAGGAUCAGUAUC 23 10610
BCLllA-8868 - GCUAAGAAUACCAGGAUCAGUAUC 24 10611
BCLllA-8869 - CCCGGGCGAGUCGGCCUC 18 10612
BCLllA-8870 - CCCCGGGCGAGUCGGCCUC 19 10613
BCLllA-6047 - UCCCCGGGCGAGUCGGCCUC 20 10614
BCLllA-8871 - CUCCCCGGGCGAGUCGGCCUC 21 10615
BCLllA-8872 - GCUCCCCGGGCGAGUCGGCCUC 22 10616
BCLllA-8873 - UGCUCCCCGGGCGAGUCGGCCUC 23 10617
BCLllA-8874 - CUGCUCCCCGGGCGAGUCGGCCUC 24 10618
BCLllA-8875 - UCUAAGCGCAUCAAGCUC 18 10619
BCLllA-8876 - CUCUAAGCGCAUCAAGCUC 19 10620
BCLllA-8877 - UCUCUAAGCGCAUCAAGCUC 20 10621
BCLllA-8878 - UUCUCUAAGCGCAUCAAGCUC 21 10622
BCLllA-8879 - CUUCUCUAAGCGCAUCAAGCUC 22 10623
BCLllA-8880 - CCUUCUCUAAGCGCAUCAAGCUC 23 10624
BCLllA-8881 - CCCUUCUCUAAGCGCAUCAAGCUC 24 10625
BCLllA-8882 - GUUUUCGGAUGGAAGCUC 18 10626
BCLllA-8883 - AGUUUUCGGAUGGAAGCUC 19 10627
BCLllA-8884 - CAGUUUUCGGAUGGAAGCUC 20 10628
BCLllA-8885 - GCAGUUUUCGGAUGGAAGCUC 21 10629
BCLllA-8886 - GGCAGUUUUCGGAUGGAAGCUC 22 10630
BCLllA-8887 - UGGCAGUUUUCGGAUGGAAGCUC 23 10631
BCLllA-8888 - GUGGCAGUUUUCGGAUGGAAGCUC 24 10632
BCLllA-8889 - CCACCACGAGAACAGCUC 18 10633
BCLllA-8890 - GCCACCACGAGAACAGCUC 19 10634
BCLllA-8891 - CGCCACCACGAGAACAGCUC 20 10635
BCLllA-8892 - GCGCCACCACGAGAACAGCUC 21 10636
BCLllA-8893 - CGCGCCACCACGAGAACAGCUC 22 10637
BCLllA-8894 - GCGCGCCACCACGAGAACAGCUC 23 10638
BCLllA-8895 - GGCGCGCCACCACGAGAACAGCUC 24 10639
BCLllA-8896 - UCCCGCCAUGGAUUUCUC 18 10640
BCLllA-8897 - CUCCCGCCAUGGAUUUCUC 19 10641
BCLllA-8898 - CCUCCCGCCAUGGAUUUCUC 20 10642
BCLllA-8899 - GCCUCCCGCCAUGGAUUUCUC 21 10643
BCLllA-8900 - AGCCUCCCGCCAUGGAUUUCUC 22 10644
BCLllA-8901 - GAGCCUCCCGCCAUGGAUUUCUC 23 10645
BCLllA-8902 - GGAGCCUCCCGCCAUGGAUUUCUC 24 10646
BCLllA-8903 - GAGGCCUUCCACCAGGUC 18 10647
BCLllA-8904 - CGAGGCCUUCCACCAGGUC 19 10648
BCLllA-8905 - GCGAGGCCUUCCACCAGGUC 20 10649 BCLllA-8906 - AGCGAGGCCUUCCACCAGGUC 21 10650
BCLllA-8907 - CAGCGAGGCCUUCCACCAGGUC 22 10651
BCLllA-8908 - UCAGCGAGGCCUUCCACCAGGUC 23 10652
BCLllA-8909 - UUCAGCGAGGCCUUCCACCAGGUC 24 10653
BCLllA-8910 - AGCUCGCGGGGCGCGGUC 18 10654
BCLllA-8911 - CAGCUCGCGGGGCGCGGUC 19 10655
BCLllA-8912 - ACAGCUCGCGGGGCGCGGUC 20 10656
BCLllA-8913 - AACAGCUCGCGGGGCGCGGUC 21 10657
BCLllA-8914 - GAACAGCUCGCGGGGCGCGGUC 22 10658
BCLllA-8915 - AGAA CAGCUCGCGGGGCGCGGUC 23 10659
BCLllA-8916 - GAGAACAGCUCGCGGGGCGCGGUC 24 10660
BCLllA-8917 - UACUGUGGGAAAGUCUUC 18 10661
BCLllA-8918 - GUACUGUGGGAAAGUCUUC 19 10662
BCLllA-8919 - AGUACUGUGGGAAAGUCUUC 20 10663
BCLllA-8920 - GAGUACUGUGGGAAAGUCUUC 21 10664
BCLllA-8921 - UGAGUACUGUGGGAAAGUCUUC 22 10665
BCLllA-8922 - GUGAGUACUGUGGGAAAGUCUUC 23 10666
BCLllA-8923 - UGUGAGUACUGUGGGAAAGUCUUC 24 10667
BCLllA-8924 - UCCGUGGUGGCCAAGUUC 18 10668
BCLllA-8925 - GUCCGUGGUGGCCAAGUUC 19 10669
BCLllA-8926 - AGUCCGUGGUGGCCAAGUUC 20 10670
BCLllA-8927 - AAGUCCGUGGUGGCCAAGUUC 21 10671
BCLllA-8928 - CAAGUCCGUGGUGGCCAAGUUC 22 10672
BCLllA-8929 - UCAAGUCCGUGGUGGCCAAGUUC 23 10673
BCLllA-8930 - CUCAAGUCCGUGGUGGCCAAGUUC 24 10674
BCLllA-6826 - AUUAUUUUGCAGGUAAAG 18 10675
BCLllA-6827 - UAUUAUUUUGCAGGUAAAG 19 10676
BCLllA-6828 - GUAUUAUUUUGCAGGUAAAG 20 10677
BCLllA-8931 - U GCACCCAGG CCAG CAAG 18 10678
BCLllA-8932 - GUGCACCCAGGCCAGCAAG 19 10679
BCLllA-8933 - CGUGCACCCAGGCCAGCAAG 20 10680
BCLllA-8934 - GCGUGCACCCAGGCCAGCAAG 21 10681
BCLllA-8935 - CGCGUGCACCCAGGCCAGCAAG 22 10682
BCLllA-8936 - ACG CG U G CACCC AG G CC AG CAAG 23 10683
BCLllA-8937 - CACG CG UG CACCCAGG CCAGCAAG 24 10684
BCLllA-8938 - ACGAGGAAGAGGAAGAAG 18 10685
BCLllA-8939 - GACGAGGAAGAGGAAGAAG 19 10686
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 10687
BCLllA-8940 - ACGACGAGGAAGAGGAAGAAG 21 10688
BCLllA-8941 - GACGACGAGGAAGAGGAAGAAG 22 10689
BCLllA-8942 - GGACGACGAGGAAGAGGAAGAAG 23 10690
BCLllA-8943 - AGGACGACGAGGAAGAGGAAGAAG 24 10691 BCLllA-8944 - ACGACGAGGAAGAGGAAG 18 10692
BCLllA-8945 - GACGACGAGGAAGAGGAAG 19 10693
BCLllA-3959 - GGACGACGAGGAAGAGGAAG 20 10694
BCLllA-8946 - AGGACGACGAGGAAGAGGAAG 21 10695
BCLllA-8947 - GAGGACGACGAGGAAGAGGAAG 22 10696
BCLllA-8948 - GGAGGACGACGAGGAAGAGGAAG 23 10697
BCLllA-8949 - AGGAGGACGACGAGGAAGAGGAAG 24 10698
BCLllA-8950 - AGGAGGACGACGAGGAAG 18 10699
BCLllA-8951 - GAGGAGGACGACGAGGAAG 19 10700
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 10701
BCLllA-8952 - AAGAGGAGGACGACGAGGAAG 21 10702
BCLllA-8953 - GAAGAGGAGGACGACGAGGAAG 22 10703
BCLllA-8954 - GGAAGAGGAGGACGACGAGGAAG 23 10704
BCLllA-8955 - AGGAAGAGGAGGACGACGAGGAAG 24 10705
BCLllA-8956 - AGGAAGAAGAGGAGGAAG 18 10706
BCLllA-8957 - GAGGAAGAAGAGGAGGAAG 19 10707
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 10708
BCLllA-8958 - AAGAGGAAGAAGAGGAGGAAG 21 10709
BCLllA-8959 - GAAGAGGAAGAAGAGGAGGAAG 22 10710
BCLllA-8960 - GGAAGAGGAAGAAGAGGAGGAAG 23 10711
BCLllA-8961 - AGGAAGAGGAAGAAGAGGAGGAAG 24 10712
BCLllA-8962 - ACGGGGACGAGGAGGAAG 18 10713
BCLllA-8963 - AACGGGGACGAGGAGGAAG 19 10714
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 10715
BCLllA-8964 - AGAACGGGGACGAGGAGGAAG 21 10716
BCLllA-8965 - GAGAACGGGGACGAGGAGGAAG 22 10717
BCLllA-8966 - GGAGAACGGGGACGAGGAGGAAG 23 10718
BCLllA-8967 - CGGAGAACGGGGACGAGGAGGAAG 24 10719
BCLllA-8968 - GCGCAGCGGCACGGGAAG 18 10720
BCLllA-8969 - GGCGCAGCGGCACGGGAAG 19 10721
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 10722
BCLllA-8970 - GGGGCGCAGCGGCACGGGAAG 21 10723
BCLllA-8971 - CGGGGCGCAGCGGCACGGGAAG 22 10724
BCLllA-8972 - UCGGGGCGCAGCGGCACGGGAAG 23 10725
BCLllA-8973 - CUCGGGGCGCAGCGGCACGGGAAG 24 10726
BCLllA-8974 - AGGCUUCCGGCCUGGCAG 18 10727
BCLllA-8975 - GAGGCUUCCGGCCUGGCAG 19 10728
BCLllA-8976 - AGAGGCUUCCGGCCUGGCAG 20 10729
BCLllA-8977 - GAGAGGCUUCCGGCCUGGCAG 21 10730
BCLllA-8978 - AGAGAGGCUUCCGGCCUGGCAG 22 10731
BCLllA-8979 - GAGAGAGGCUUCCGGCCUGGCAG 23 10732
BCLllA-8980 - CGAGAGAGGCUUCCGGCCUGGCAG 24 10733 BCLllA-8981 - GAGGAAGAGGAAGAAGAG 18 10734
BCLllA-8982 - CGAGGAAGAGGAAGAAGAG 19 10735
BCLllA-3948 - ACGAGGAAGAGGAAGAAGAG 20 10736
BCLllA-8983 - GACGAGGAAGAGGAAGAAGAG 21 10737
BCLllA-8984 - CGACGAGGAAGAGGAAGAAGAG 22 10738
BCLllA-8985 - ACGACGAGGAAGAGGAAGAAGAG 23 10739
BCLllA-8986 - GACGACGAGGAAGAGGAAGAAGAG 24 10740
BCLllA-8987 - GAAGAAGAGGAGGAAGAG 18 10741
BCLllA-8988 - GGAAGAAGAGGAGGAAGAG 19 10742
BCLllA-3961 - AGGAAGAAGAGGAGGAAGAG 20 10743
BCLllA-8989 - GAGGAAGAAGAGGAGGAAGAG 21 10744
BCLllA-8990 - AGAGGAAGAAGAGGAGGAAGAG 22 10745
BCLllA-8991 - AAGAGGAAGAAGAGGAGGAAGAG 23 10746
BCLllA-8992 - GAAGAGGAAGAAGAGGAGGAAGAG 24 10747
BCLllA-8993 - GGGGACGAGGAGGAAGAG 18 10748
BCLllA-8994 - CGGGGACGAGGAGGAAGAG 19 10749
BCLllA-3945 - ACGGGGACGAGGAGGAAGAG 20 10750
BCLllA-8995 - AACGGGGACGAGGAGGAAGAG 21 10751
BCLllA-8996 - GAACGGGGACGAGGAGGAAGAG 22 10752
BCLllA-8997 - AGAACGGGGACGAGGAGGAAGAG 23 10753
BCLllA-8998 - GAGAACGGGGACGAGGAGGAAGAG 24 10754
BCLllA-8999 - CCGGAGAACGGGGACGAG 18 10755
BCLllA-9000 - CCCGGAGAACGGGGACGAG 19 10756
BCLllA-9001 - UCCCGGAGAACGGGGACGAG 20 10757
BCLllA-9002 - AUCCCGGAGAACGGGGACGAG 21 10758
BCLllA-9003 - GAUCCCGGAGAACGGGGACGAG 22 10759
BCLllA-9004 - UGAUCCCGGAGAACGGGGACGAG 23 10760
BCLllA-9005 - CUGAUCCCGGAGAACGGGGACGAG 24 10761
BCLllA-9006 - GACUCGGUGGCCGGCGAG 18 10762
BCLllA-9007 - AGACUCGGUGGCCGGCGAG 19 10763
BCLllA-9008 - AAGACUCGGUGGCCGGCGAG 20 10764
BCLllA-9009 - GAAGACUCGGUGGCCGGCGAG 21 10765
BCLllA-9010 - CGAAGACUCGGUGGCCGGCGAG 22 10766
BCLllA-9011 - ACGAAGACUCGGUGGCCGGCGAG 23 10767
BCLllA-9012 - GACGAAGACUCGGUGGCCGGCGAG 24 10768
BCLllA-9013 - AAGCGCAUCAAGCUCGAG 18 10769
BCLllA-9014 - UAAGCGCAUCAAGCUCGAG 19 10770
BCLllA-9015 - CUAAGCGCAUCAAGCUCGAG 20 10771
BCLllA-9016 - UCU AAGCGCAUCAAGCUCGAG 21 10772
BCLllA-9017 - CUCUAAGCGCAUCAAGCUCGAG 22 10773
BCLllA-9018 - UCUCUAAGCGCAUCAAGCUCGAG 23 10774
BCLllA-9019 - UUCUCUAAGCGCAUCAAGCUCGAG 24 10775 BCLllA-9020 - GAAGAGGAGGAAGAGGAG 18 10776
BCLllA-9021 - AGAAGAGGAGGAAGAGGAG 19 10777
BCLllA-3964 - AAGAAGAGGAGGAAGAGGAG 20 10778
BCLllA-9022 - GAAGAAGAGGAGGAAGAGGAG 21 10779
BCLllA-9023 - GGAAGAAGAGGAGGAAGAGGAG 22 10780
BCLllA-9024 - AGGAAGAAGAGGAGGAAGAGGAG 23 10781
BCLllA-9025 - GAGGAAGAAGAGGAGGAAGAGGAG 24 10782
BCLllA-9026 - GAGGAGGAAGAGGAGGAG 18 10783
BCLllA-9027 - AGAGGAGGAAGAGGAGGAG 19 10784
BCLllA-3965 - AAGAGGAGGAAGAGGAGGAG 20 10785
BCLllA-9028 - GAAGAGGAGGAAGAGGAGGAG 21 10786
BCLllA-9029 - AGAAGAGGAGGAAGAGGAGGAG 22 10787
BCLllA-9030 - AAGAAGAGGAGGAAGAGGAGGAG 23 10788
BCLllA-9031 - GAAGAAGAGGAGGAAGAGGAGGAG 24 10789
BCLllA-9032 - UCCACACCGCCCGGGGAG 18 10790
BCLllA-9033 - CUCCACACCGCCCGGGGAG 19 10791
BCLllA-9034 - UCUCCACACCGCCCGGGGAG 20 10792
BCLllA-9035 - UUCUCCACACCGCCCGGGGAG 21 10793
BCLllA-9036 - CUUCUCCACACCGCCCGGGGAG 22 10794
BCLllA-9037 - GCUUCUCCACACCGCCCGGGGAG 23 10795
BCLllA-9038 - CGCUUCUCCACACCGCCCGGGGAG 24 10796
BCLllA-9039 - GCCGCGAUGCCCAACACG 18 10797
BCLllA-9040 - GGCCGCGAUGCCCAACACG 19 10798
BCLllA-9041 - CGGCCGCGAUGCCCAACACG 20 10799
BCLllA-9042 - CCGGCCGCGAUGCCCAACACG 21 10800
BCLllA-9043 - CCCGGCCGCGAUGCCCAACACG 22 10801
BCLllA-9044 - CCCCGGCCGCGAUGCCCAACACG 23 10802
BCLllA-9045 - CCCCCGGCCGCGAUGCCCAACACG 24 10803
BCLllA-9046 - AGGAAGAGGAGGACGACG 18 10804
BCLllA-9047 - GAGGAAGAGGAGGACGACG 19 10805
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 10806
BCLllA-9048 - AGGAGGAAGAGGAGGACGACG 21 10807
BCLllA-9049 - GAGGAGGAAGAGGAGGACGACG 22 10808
BCLllA-9050 - CGAGGAGGAAGAGGAGGACGACG 23 10809
BCLllA-9051 - ACGAGGAGGAAGAGGAGGACGACG 24 10810
BCLllA-9052 - AGGAGGAAGAGGAGGACG 18 10811
BCLllA-9053 - GAGGAGGAAGAGGAGGACG 19 10812
BCLllA-3953 - CGAGGAGGAAGAGGAGGACG 20 10813
BCLllA-9054 - ACGAGGAGGAAGAGGAGGACG 21 10814
BCLllA-9055 - GACGAGGAGGAAGAGGAGGACG 22 10815
BCLllA-9056 - GGACGAGGAGGAAGAGGAGGACG 23 10816
BCLllA-9057 - GGGACGAGGAGGAAGAGGAGGACG 24 10817 BCLllA-9058 - UCCCGGAGAACGGGGACG 18 10818
BCLllA-9059 - AUCCCGGAGAACGGGGACG 19 10819
BCLllA-6081 - GAUCCCGGAGAACGGGGACG 20 10820
BCLllA-9060 - UGAUCCCGGAGAACGGGGACG 21 10821
BCLllA-9061 - CUGAUCCCGGAGAACGGGGACG 22 10822
BCLllA-9062 - CCUGAUCCCGGAGAACGGGGACG 23 10823
BCLllA-9063 - ACCUGAUCCCGGAGAACGGGGACG 24 10824
BCLllA-9064 - CGCCCGGGGAGCUGGACG 18 10825
BCLllA-9065 - CCGCCCGGGGAGCUGGACG 19 10826
BCLllA-9066 - ACCGCCCGGGGAGCUGGACG 20 10827
BCLllA-9067 - CACCGCCCGGGGAGCUGGACG 21 10828
BCLllA-9068 - ACACCGCCCGGGGAGCUGGACG 22 10829
BCLllA-9069 - CACACCGCCCGGGGAGCUGGACG 23 10830
BCLllA-9070 - CCACACCGCCCGGGGAGCUGGACG 24 10831
BCLllA-9071 - GAGGAGGAGGAGCUGACG 18 10832
BCLllA-9072 - GGAGGAGGAGGAGCUGACG 19 10833
BCLllA-9073 - AGGAGGAGGAGGAGCUGACG 20 10834
BCLllA-9074 - GAGGAGGAGGAGGAGCUGACG 21 10835
BCLllA-9075 - AGAGGAGGAGGAGGAGCUGACG 22 10836
BCLllA-9076 - AAGAGGAGGAGGAGGAGCUGACG 23 10837
BCLllA-9077 - GAAGAGGAGGAGGAGGAGCUGACG 24 10838
BCLllA-9078 - GCUUCUCCACACCGCCCG 18 10839
BCLllA-9079 - CGCUUCUCCACACCGCCCG 19 10840
BCLllA-6087 - GCGCUUCUCCACACCGCCCG 20 10841
BCLllA-9080 - UGCGCUUCUCCACACCGCCCG 21 10842
BCLllA-9081 - UUGCGCUUCUCCACACCGCCCG 22 10843
BCLllA-9082 - UUUGCGCUUCUCCACACCGCCCG 23 10844
BCLllA-9083 - GUUUGCGCUUCUCCACACCGCCCG 24 10845
BCLllA-9084 - GACCCCAACCUGAUCCCG 18 10846
BCLllA-9085 - CGACCCCAACCUGAUCCCG 19 10847
BCLllA-9086 - ACGACCCCAACCUGAUCCCG 20 10848
BCLllA-9087 - AACGACCCCAACCUGAUCCCG 21 10849
BCLllA-9088 - GAACGACCCCAACCUGAUCCCG 22 10850
BCLllA-9089 - AGAACGACCCCAACCUGAUCCCG 23 10851
BCLllA-9090 - GAGAACGACCCCAACCUGAUCCCG 24 10852
BCLllA-9091 - CGGUCGUGGGCGUGGGCG 18 10853
BCLllA-9092 - GCGGUCGUGGGCGUGGGCG 19 10854
BCLllA-9093 - CGCGGUCGUGGGCGUGGGCG 20 10855
BCLllA-9094 - GCGCGGUCGUGGGCGUGGGCG 21 10856
BCLllA-9095 - GGCGCGGUCGUGGGCGUGGGCG 22 10857
BCLllA-9096 - GGGCGCGGUCGUGGGCGUGGGCG 23 10858
BCLllA-9097 - GGGGCGCGGUCGUGGGCGUGGGCG 24 10859 BCLllA-9098 - GCCACAGGGACACUUGCG 18 10860
BCLllA-9099 - GGCCACAGGGACACUUGCG 19 10861
BCLllA-9100 - GGGCCACAGGGACACUUGCG 20 10862
BCLllA-9101 - AGGGCCACAGGGACACUUGCG 21 10863
BCLllA-9102 - GAGGGCCACAGGGACACUUGCG 22 10864
BCLllA-9103 - CGAGGGCCACAGGGACACUUGCG 23 10865
BCLllA-9104 - CCGAGGGCCACAGGGACACUUGCG 24 10866
BCLllA-9105 - CCGGGCGAGUCGGCCUCG 18 10867
BCLllA-9106 - CCCGGGCGAGUCGGCCUCG 19 10868
BCLllA-6106 - CCCCGGGCGAGUCGGCCUCG 20 10869
BCLllA-9107 - UCCCCGGGCGAGUCGGCCUCG 21 10870
BCLllA-9108 - CUCCCCGGGCGAGUCGGCCUCG 22 10871
BCLllA-9109 - GCUCCCCGGGCGAGUCGGCCUCG 23 10872
BCLllA-9110 - UGCUCCCCGGGCGAGUCGGCCUCG 24 10873
BCLllA-9111 - UCGUCGGAGCACUCCUCG 18 10874
BCLllA-9112 - CUCGUCGGAGCACUCCUCG 19 10875
BCLllA-9113 - CCUCGUCGGAGCACUCCUCG 20 10876
BCLllA-9114 - UCCUCGUCGGAGCACUCCUCG 21 10877
BCLllA-9115 - CUCCUCGUCGGAGCACUCCUCG 22 10878
BCLllA-9116 - CCUCCUCGUCGGAGCACUCCUCG 23 10879
BCLllA-9117 - GCCUCCUCGUCGGAGCACUCCUCG 24 10880
BCLllA-9118 - UCGCCUUUUGCCUCCUCG 18 10881
BCLllA-9119 - AUCGCCUUUUGCCUCCUCG 19 10882
BCLllA-9120 - AAUCGCCUUUUGCCUCCUCG 20 10883
BCLllA-9121 - CAAUCGCCUUUUGCCUCCUCG 21 10884
BCLllA-9122 - ACAAUCGCCUUUUGCCUCCUCG 22 10885
BCLllA-9123 - GACAAUCGCCUUUUGCCUCCUCG 23 10886
BCLllA-9124 - AGACAAUCGCCUUUUGCCUCCUCG 24 10887
BCLllA-9125 - CACCACGAGAACAGCUCG 18 10888
BCLllA-9126 - CCACCACGAGAACAGCUCG 19 10889
BCLllA-6107 - GCCACCACGAGAACAGCUCG 20 10890
BCLllA-9127 - CGCCACCACGAGAACAGCUCG 21 10891
BCLllA-9128 - GCGCCACCACGAGAACAGCUCG 22 10892
BCLllA-9129 - CGCGCCACCACGAGAACAGCUCG 23 10893
BCLllA-9130 - GCGCGCCACCACGAGAACAGCUCG 24 10894
BCLllA-9131 - CUGGGCAGCCCCAGCUCG 18 10895
BCLllA-9132 - GCUGGGCAGCCCCAGCUCG 19 10896
BCLllA-9133 - UGCUGGGCAGCCCCAGCUCG 20 10897
BCLllA-9134 - CUGCUGGGCAGCCCCAGCUCG 21 10898
BCLllA-9135 - GCUGCUGGGCAGCCCCAGCUCG 22 10899
BCLllA-9136 - UGCUGCUGGGCAGCCCCAGCUCG 23 10900
BCLllA-9137 - CUGCUGCUGGGCAGCCCCAGCUCG 24 10901 BCLllA-9138 - AGGAAGAGGAAGAAGAGG 18 10902
BCLllA-9139 - GAGGAAGAGGAAGAAGAGG 19 10903
BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 10904
BCLllA-9140 - ACGAGGAAGAGGAAGAAGAGG 21 10905
BCLllA-9141 - GACGAGGAAGAGGAAGAAGAGG 22 10906
BCLllA-9142 - CGACGAGGAAGAGGAAGAAGAGG 23 10907
BCLllA-9143 - ACGACGAGGAAGAGGAAGAAGAGG 24 10908
BCLllA-9144 - AGGACGACGAGGAAGAGG 18 10909
BCLllA-9145 - GAGGACGACGAGGAAGAGG 19 10910
BCLllA-3957 - GGAGGACGACGAGGAAGAGG 20 10911
BCLllA-9146 - AGGAGGACGACGAGGAAGAGG 21 10912
BCLllA-9147 - GAGGAGGACGACGAGGAAGAGG 22 10913
BCLllA-9148 - AGAGGAGGACGACGAGGAAGAGG 23 10914
BCLllA-9149 - AAGAGGAGGACGACGAGGAAGAGG 24 10915
BCLllA-9150 - AAGAAGAGGAGGAAGAGG 18 10916
BCLllA-9151 - GAAGAAGAGGAGGAAGAGG 19 10917
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 10918
BCLllA-9152 - AGGAAGAAGAGGAGGAAGAGG 21 10919
BCLllA-9153 - GAGGAAGAAGAGGAGGAAGAGG 22 10920
BCLllA-9154 - AGAGGAAGAAGAGGAGGAAGAGG 23 10921
BCLllA-9155 - AAGAGGAAGAAGAGGAGGAAGAGG 24 10922
BCLllA-9156 - CUGACGGAGAGCGAGAGG 18 10923
BCLllA-9157 - GCUGACGGAGAGCGAGAGG 19 10924
BCLllA-9158 - AGCUGACGGAGAGCGAGAGG 20 10925
BCLllA-9159 - GAGCUGACGGAGAGCGAGAGG 21 10926
BCLllA-9160 - GGAGCUGACGGAGAGCGAGAGG 22 10927
BCLllA-9161 - AGGAGCUGACGGAGAGCGAGAGG 23 10928
BCLllA-9162 - GAGGAGCUGACGGAGAGCGAGAGG 24 10929
BCLllA-9163 - AAGAGGAGGACGACGAGG 18 10930
BCLllA-9164 - GAAGAGGAGGACGACGAGG 19 10931
BCLllA-3960 - GGAAGAGGAGGACGACGAGG 20 10932
BCLllA-9165 - AGGAAGAGGAGGACGACGAGG 21 10933
BCLllA-9166 - GAGGAAGAGGAGGACGACGAGG 22 10934
BCLllA-9167 - GGAGGAAGAGGAGGACGACGAGG 23 10935
BCLllA-9168 - AGGAGGAAGAGGAGGACGACGAGG 24 10936
BCLllA-9169 - CGGAGAACGGGGACGAGG 18 10937
BCLllA-9170 - CCGGAGAACGGGGACGAGG 19 10938
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 10939
BCLllA-9171 - UCCCGGAGAACGGGGACGAGG 21 10940
BCLllA-9172 - AUCCCGGAGAACGGGGACGAGG 22 10941
BCLllA-9173 - GAUCCCGGAGAACGGGGACGAGG 23 10942
BCLllA-9174 - UGAUCCCGGAGAACGGGGACGAGG 24 10943 BCLllA-9175 - GCGGCCACCUGGCCGAGG 18 10944
BCLllA-9176 - CGCGGCCACCUGGCCGAGG 19 10945
BCLllA-9177 - GCGCGGCCACCUGGCCGAGG 20 10946
BCLllA-9178 - AGCGCGGCCACCUGGCCGAGG 21 10947
BCLllA-9179 - AAGCGCGGCCACCUGGCCGAGG 22 10948
BCLllA-9180 - UAAGCGCGGCCACCUGGCCGAGG 23 10949
BCLllA-9181 - AUAAGCGCGGCCACCUGGCCGAGG 24 10950
BCLllA-9182 - AAGAGGAAGAAGAGGAGG 18 10951
BCLllA-9183 - GAAGAGGAAGAAGAGGAGG 19 10952
BCLllA-3963 - GGAAGAGGAAGAAGAGGAGG 20 10953
BCLllA-9184 - AGGAAGAGGAAGAAGAGGAGG 21 10954
BCLllA-9185 - GAGGAAGAGGAAGAAGAGGAGG 22 10955
BCLllA-9186 - CGAGGAAGAGGAAGAAGAGGAGG 23 10956
BCLllA-9187 - ACGAGGAAGAGGAAGAAGAGGAGG 24 10957
BCLllA-9188 - AAGAGGAGGAAGAGGAGG 18 10958
BCLllA-9189 - GAAGAGGAGGAAGAGGAGG 19 10959
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 10960
BCLllA-9190 - AAG AAG AG G AG G AAG AG G AG G 21 10961
BCLllA-9191 - GAAGAAGAGGAGGAAGAGGAGG 22 10962
BCLllA-9192 - GGAAGAAGAGGAGGAAGAGGAGG 23 10963
BCLllA-9193 - AGGAAGAAGAGGAGGAAGAGGAGG 24 10964
BCLllA-9194 - AGAACGGGGACGAGGAGG 18 10965
BCLllA-9195 - GAGAACGGGGACGAGGAGG 19 10966
BCLllA-3918 - GGAGAACGGGGACGAGGAGG 20 10967
BCLllA-9196 - CGGAGAACGGGGACGAGGAGG 21 10968
BCLllA-9197 - CCGGAGAACGGGGACGAGGAGG 22 10969
BCLllA-9198 - CCCGGAGAACGGGGACGAGGAGG 23 10970
BCLllA-9199 - UCCCGGAGAACGGGGACGAGGAGG 24 10971
BCLllA-9200 - AGGAGGAAGAGGAGGAGG 18 10972
BCLllA-9201 - GAGGAGGAAGAGGAGGAGG 19 10973
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 10974
BCLllA-9202 - AAGAGGAGGAAGAGGAGGAGG 21 10975
BCLllA-9203 - GAAGAGGAGGAAGAGGAGGAGG 22 10976
BCLllA-9204 - AGAAGAGGAGGAAGAGGAGGAGG 23 10977
BCLllA-9205 - AAGAAGAGGAGGAAGAGGAGGAGG 24 10978
BCLllA-9206 - ACCGGCGCAGCCACACGG 18 10979
BCLllA-9207 - CACCGGCGCAGCCACACGG 19 10980
BCLllA-3764 - GCACCGGCGCAGCCACACGG 20 10981
BCLllA-9208 - UGCACCGGCGCAGCCACACGG 21 10982
BCLllA-9209 - GUGCACCGGCGCAGCCACACGG 22 10983
BCLllA-9210 - GGUGCACCGGCGCAGCCACACGG 23 10984
BCLllA-9211 - UGGUGCACCGGCGCAGCCACACGG 24 10985 BCLllA-9212 - UAGAGCGCCUGGGGGCGG 18 10986
BCLllA-9213 - AUAGAGCGCCUGGGGGCGG 19 10987
BCLllA-9214 - CAUAGAGCGCCUGGGGGCGG 20 10988
BCLllA-9215 - GCAUAGAGCGCCUGGGGGCGG 21 10989
BCLllA-9216 - CGCAUAGAGCGCCUGGGGGCGG 22 10990
BCLllA-9217 - CCGCAUAGAGCGCCUGGGGGCGG 23 10991
BCLllA-9218 - ACCGCAUAGAGCGCCUGGGGGCGG 24 10992
BCLllA-9219 - AUGUGUGGCAGUUUUCGG 18 10993
BCLllA-9220 - GAUGUGUGGCAGUUUUCGG 19 10994
BCLllA-9221 - AGAUGUGUGGCAGUUUUCGG 20 10995
BCLllA-9222 - AAGAUGUGUGGCAGUUUUCGG 21 10996
BCLllA-9223 - CAAGAUGUGUGGCAGUUUUCGG 22 10997
BCLllA-9224 - UCAAGAUGUGUGGCAGUUUUCGG 23 10998
BCLllA-9225 - CUCAAGAUGUGUGGCAGUUUUCGG 24 10999
BCLllA-9226 - AAUUUGAAGCCCCCAGGG 18 11000
BCLllA-9227 - AAAUUUGAAGCCCCCAGGG 19 11001
BCLllA-9228 - AAAAUUUGAAGCCCCCAGGG 20 11002
BCLllA-9229 - GAAAAUUUGAAGCCCCCAGGG 21 11003
BCLllA-9230 - AGAAAAUUUGAAGCCCCCAGGG 22 11004
BCLllA-9231 - GAGAAAAUUUGAAGCCCCCAGGG 23 11005
BCLllA-9232 - UGAGAAAAUUUGAAGCCCCCAGGG 24 11006
BCLllA-9233 - GUGGACUACGGCUUCGGG 18 11007
BCLllA-9234 - GGUGGACUACGGCUUCGGG 19 11008
BCLllA-9235 - GGGUGGACUACGGCUUCGGG 20 11009
BCLllA-9236 - AGGGUGGACUACGGCUUCGGG 21 11010
BCLllA-9237 - GAGGGUGGACUACGGCUUCGGG 22 11011
BCLllA-9238 - AGAGGGUGGACUACGGCUUCGGG 23 11012
BCLllA-9239 - GAGAGGGUGGACUACGGCUUCGGG 24 11013
BCLllA-9240 - UGAUCCCGGAGAACGGGG 18 11014
BCLllA-9241 - CUGAUCCCGGAGAACGGGG 19 11015
BCLllA-9242 - CCUGAUCCCGGAGAACGGGG 20 11016
BCLllA-9243 - ACCUGAUCCCGGAGAACGGGG 21 11017
BCLllA-9244 - AACCUGAUCCCGGAGAACGGGG 22 11018
BCLllA-9245 - CAACCUGAUCCCGGAGAACGGGG 23 11019
BCLllA-9246 - CCAACCUGAUCCCGGAGAACGGGG 24 11020
BCLllA-9247 - GCAUAGAGCGCCUGGGGG 18 11021
BCLllA-9248 - CGCAUAGAGCGCCUGGGGG 19 11022
BCLllA-6143 - CCGCAUAGAGCGCCUGGGGG 20 11023
BCLllA-9249 - ACCGCAUAGAGCGCCUGGGGG 21 11024
BCLllA-9250 - CACCGCAUAGAGCGCCUGGGGG 22 11025
BCLllA-9251 - CCACCGCAUAGAGCGCCUGGGGG 23 11026
BCLllA-9252 - CCCACCGCAUAGAGCGCCUGGGGG 24 11027 BCLllA-9253 - CGCAUAGAGCGCCUGGGG 18 11028
BCLllA-9254 - CCGCAUAGAGCGCCUGGGG 19 11029
BCLllA-9255 - ACCGCAUAGAGCGCCUGGGG 20 11030
BCLllA-9256 - CACCGCAUAGAGCGCCUGGGG 21 11031
BCLllA-9257 - CCACCGCAUAGAGCGCCUGGGG 22 11032
BCLllA-9258 - CCCACCGCAUAGAGCGCCUGGGG 23 11033
BCLllA-9259 - CCCCACCGCAUAGAGCGCCUGGGG 24 11034
BCLllA-9260 - AUAAGCGCGGCCACCUGG 18 11035
BCLllA-9261 - CAUAAGCGCGGCCACCUGG 19 11036
BCLllA-9262 - GCAUAAGCGCGGCCACCUGG 20 11037
BCLllA-9263 - AGCAUAAGCGCGGCCACCUGG 21 11038
BCLllA-9264 - AAGCAUAAGCGCGGCCACCUGG 22 11039
BCLllA-9265 - GAAGCAUAAGCGCGGCCACCUGG 23 11040
BCLllA-9266 - AGAAGCAUAAGCGCGGCCACCUGG 24 11041
BCLllA-9267 - GAGAGGCUUCCGGCCUGG 18 11042
BCLllA-9268 - AGAGAGGCUUCCGGCCUGG 19 11043
BCLllA-9269 - GAGAGAGGCUUCCGGCCUGG 20 11044
BCLllA-9270 - CGAGAGAGGCUUCCGGCCUGG 21 11045
BCLllA-9271 - UCGAGAGAGGCUUCCGGCCUGG 22 11046
BCLllA-9272 - AUCGAGAGAGGCUUCCGGCCUGG 23 11047
BCLllA-9273 - UAUCGAGAGAGGCUUCCGGCCUGG 24 11048
BCLllA-9274 - CCUUCCACCAGGUCCUGG 18 11049
BCLllA-9275 - GCCUUCCACCAGGUCCUGG 19 11050
BCLllA-9276 - GGCCUUCCACCAGGUCCUGG 20 11051
BCLllA-9277 - AGGCCUUCCACCAGGUCCUGG 21 11052
BCLllA-9278 - GAGGCCUUCCACCAGGUCCUGG 22 11053
BCLllA-9279 - CGAGGCCUUCCACCAGGUCCUGG 23 11054
BCLllA-9280 - GCGAGGCCUUCCACCAGGUCCUGG 24 11055
BCLllA-9281 - GGAGACUUAGAGAGCUGG 18 11056
BCLllA-9282 - AGGAGACUUAGAGAGCUGG 19 11057
BCLllA-9283 - UAGGAGACUUAGAGAGCUGG 20 11058
BCLllA-9284 - CUAGGAGACUUAGAGAGCUGG 21 11059
BCLllA-9285 - UCU AGGAGACUUAGAGAGCUGG 22 11060
BCLllA-9286 - CUCUAGGAGACUUAGAGAGCUGG 23 11061
BCLllA-9287 - UCUCUAGGAGACUUAGAGAGCUGG 24 11062
BCLllA-9288 - CACCGCCCGGGGAGCUGG 18 11063
BCLllA-9289 - ACACCGCCCGGGGAGCUGG 19 11064
BCLllA-9290 - CACACCGCCCGGGGAGCUGG 20 11065
BCLllA-9291 - CCACACCGCCCGGGGAGCUGG 21 11066
BCLllA-9292 - UCCACACCGCCCGGGGAGCUGG 22 11067
BCLllA-9293 - CUCCACACCGCCCGGGGAGCUGG 23 11068
BCLllA-9294 - UCUCCA CACCGCCCGGGGAGCUGG 24 11069 BCLllA-9295 - CAGCGGCACGGGAAGUGG 18 11070
BCLllA-9296 - GCAGCGGCACGGGAAGUGG 19 11071
BCLllA-6157 - CGCAGCGGCACGGGAAGUGG 20 11072
BCLllA-9297 - GCGCAGCGGCACGGGAAGUGG 21 11073
BCLllA-9298 - GGCGCAGCGGCACGGGAAGUGG 22 11074
BCLllA-9299 - GGGCGCAGCGGCACGGGAAGUGG 23 11075
BCLllA-9300 - GGGGCGCAGCGGCACGGGAAGUGG 24 11076
BCLllA-9301 - GCCCUGCCCGACGUCAUG 18 11077
BCLllA-9302 - CGCCCUGCCCGACGUCAUG 19 11078
BCLllA-9303 - GCGCCCUGCCCGACGUCAUG 20 11079
BCLllA-9304 - CGCGCCCUGCCCGACGUCAUG 21 11080
BCLllA-9305 - CCGCGCCCUGCCCGACGUCAUG 22 11081
BCLllA-9306 - GCCGCGCCCUGCCCGACGUCAUG 23 11082
BCLllA-9307 - AGCCGCGCCCUGCCCGACGUCAUG 24 11083
BCLllA-9308 - CGACACUUGUGAGUACUG 18 11084
BCLllA-9309 - GCGACACUUGUGAGUACUG 19 11085
BCLllA-6169 - AGCGACACUUGUGAGUACUG 20 11086
BCLllA-9310 - CAGCGACACUUGUGAGUACUG 21 11087
BCLllA-9311 - GCAGCGACACUUGUGAGUACUG 22 11088
BCLllA-9312 - CGCAGCGACACUUGUGAGUACUG 23 11089
BCLllA-9313 - ACGCAGCGACACUUGUGAGUACUG 24 11090
BCLllA-9314 - GAGGAGGAGGAGGAGCUG 18 11091
BCLllA-9315 - AGAGGAGGAGGAGGAGCUG 19 11092
BCLllA-9316 - AAGAGGAGGAGGAGGAGCUG 20 11093
BCLllA-9317 - GAAGAGGAGGAGGAGGAGCUG 21 11094
BCLllA-9318 - GGAAGAGGAGGAGGAGGAGCUG 22 11095
BCLllA-9319 - AGGAAGAGGAGGAGGAGGAGCUG 23 11096
BCLllA-9320 - GAGGAAGAGGAGGAGGAGGAGCUG 24 11097
BCLllA-9321 - CUGUCCAAAAAGCUGCUG 18 11098
BCLllA-9322 - CCUGUCCAAAAAGCUGCUG 19 11099
BCLllA-9323 - GCCUGUCCAAAAAGCUGCUG 20 11100
BCLllA-9324 - GGCCUGUCCAAAAAGCUGCUG 21 11101
BCLllA-9325 - GGGCCUGUCCAAAAAGCUGCUG 22 11102
BCLllA-9326 - GGGGCCUGUCCAAAAAGCUGCUG 23 11103
BCLllA-9327 - GGGGGCCUGUCCAAAAAGCUGCUG 24 11104
BCLllA-9328 - GCAGCGGCACGGGAAGUG 18 11105
BCLllA-9329 - CGCAGCGGCACGGGAAGUG 19 11106
BCLllA-9330 - GCGCAGCGGCACGGGAAGUG 20 11107
BCLllA-9331 - GGCGCAGCGGCACGGGAAGUG 21 11108
BCLllA-9332 - GGGCGCAGCGGCACGGGAAGUG 22 11109
BCLllA-9333 - GGGGCGCAGCGGCACGGGAAGUG 23 11110
BCLllA-9334 - CGGGGCGCAGCGGCACGGGAAGUG 24 11111 BCLllA-9335 - CCCGGCACCAGCGACUUG 18 11112
BCLllA-9336 - ACCCGGCACCAGCGACUUG 19 11113
BCLllA-9337 - AACCCGGCACCAGCGACUUG 20 11114
BCLllA-9338 - GAACCCGGCACCAGCGACUUG 21 11115
BCLllA-9339 - GGAACCCGGCACCAGCGACUUG 22 11116
BCLllA-9340 - CGGAACCCGGCACCAGCGACUUG 23 11117
BCLllA-9341 - CCGGAACCCGGCACCAGCGACUUG 24 11118
BCLllA-9342 - CUUAAGUUCUGAGAAAAU 18 11119
BCLllA-9343 - CCUUAAGUUCUGAGAAAAU 19 11120
BCLllA-9344 - CCCU U AAG U U CUG AG AAAAU 20 11121
BCLllA-9345 - GCCCUUAAGUUCUGAGAAAAU 21 11122
BCLllA-9346 - AGCCCUUAAGUUCUGAGAAAAU 22 11123
BCLllA-9347 - GAGCCCUUAAGUUCUGAGAAAAU 23 11124
BCLllA-9348 - AG AG CCCU U AAG U U CUG AG AAAAU 24 11125
BCLllA-9349 - GGAUUUCUCUAGGAGACU 18 11126
BCLllA-9350 - UGGAUUUCUCUAGGAGACU 19 11127
BCLllA-9351 - AUGGAUUUCUCUAGGAGACU 20 11128
BCLllA-9352 - CAUGGAUUUCUCUAGGAGACU 21 11129
BCLllA-9353 - CCAUGGAUUUCUCUAGGAGACU 22 11130
BCLllA-9354 - GCCAUGGAUUUCUCUAGGAGACU 23 11131
BCLllA-9355 - CGCCAUGGAUUUCUCUAGGAGACU 24 11132
BCLllA-9356 - AUGGAUUAAGAAUCUACU 18 11133
BCLllA-9357 - CAUGGAUUAAGAAUCUACU 19 11134
BCLllA-9358 - UCAUGGAUUAAGAAUCUACU 20 11135
BCLllA-9359 - CUCAUGGAUUAAGAAUCUACU 21 11136
BCLllA-9360 - ACUCAUGGAUUAAGAAUCUACU 22 11137
BCLllA-9361 - CACUCAUGGAUUAAGAAUCUACU 23 11138
BCLllA-9362 - ACACUCAUGGAUUAAGAAUCUACU 24 11139
BCLllA-9363 - GCGACACUUGUGAGUACU 18 11140
BCLllA-9364 - AGCGACACUUGUGAGUACU 19 11141
BCLllA-9365 - CAGCGACACUUGUGAGUACU 20 11142
BCLllA-9366 - GCAGCGACACUUGUGAGUACU 21 11143
BCLllA-9367 - CGCAGCGACACUUGUGAGUACU 22 11144
BCLllA-9368 - ACGCAGCGACACUUGUGAGUACU 23 11145
BCLllA-9369 - GACGCAGCGACACUUGUGAGUACU 24 11146
BCLllA-9370 - CCACCGCAUAGAGCGCCU 18 11147
BCLllA-9371 - CCCACCGCAUAGAGCGCCU 19 11148
BCLllA-6197 - CCCCACCGCAUAGAGCGCCU 20 11149
BCLllA-9372 - CCCCCACCGCAUAGAGCGCCU 21 11150
BCLllA-9373 - ACCCCCACCGCAUAGAGCGCCU 22 11151
BCLllA-9374 - GACCCCCACCGCAUAGAGCGCCU 23 11152
BCLllA-9375 - GGACCCCCACCGCAUAGAGCGCCU 24 11153 BCLllA-9376 - CCCCGGGCGAGUCGGCCU 18 11154
BCLllA-9377 - UCCCCGGGCGAGUCGGCCU 19 11155
BCLllA-6200 - CUCCCCGGGCGAGUCGGCCU 20 11156
BCLllA-9378 - GCUCCCCGGGCGAGUCGGCCU 21 11157
BCLllA-9379 - UGCUCCCCGGGCGAGUCGGCCU 22 11158
BCLllA-9380 - CUGCUCCCCGGGCGAGUCGGCCU 23 11159
BCLllA-9381 - GCUGCUCCCCGGGCGAGUCGGCCU 24 11160
BCLllA-9382 - CCUCGUCGGAGCACUCCU 18 11161
BCLllA-9383 - UCCUCGUCGGAGCACUCCU 19 11162
BCLllA-6202 - CUCCUCGUCGGAGCACUCCU 20 11163
BCLllA-9384 - CCUCCUCGUCGGAGCACUCCU 21 11164
BCLllA-9385 - GCCUCCUCGUCGGAGCACUCCU 22 11165
BCLllA-9386 - UGCCUCCUCGUCGGAGCACUCCU 23 11166
BCLllA-9387 - UUGCCUCCUCGUCGGAGCACUCCU 24 11167
BCLllA-9388 - AAGAUCCCUUCCUUAGCU 18 11168
BCLllA-9389 - AAAGAUCCCUUCCUUAGCU 19 11169
BCLllA-9390 - CAAAGAUCCCUUCCUUAGCU 20 11170
BCLllA-9391 - UCAAAGAUCCCUUCCUUAGCU 21 11171
BCLllA-9392 - CUCAAAGAUCCCUUCCUUAGCU 22 11172
BCLllA-9393 - GCUCAAAGAUCCCUUCCUUAGCU 23 11173
BCLllA-9394 - AGCUCAAAGAUCCCUUCCUUAGCU 24 11174
BCLllA-9395 - AGAGGGUGGACUACGGCU 18 11175
BCLllA-9396 - GAGAGGGUGGACUACGGCU 19 11176
BCLllA-9397 - CGAGAGGGUGGACUACGGCU 20 11177
BCLllA-9398 - GCGAGAGGGUGGACUACGGCU 21 11178
BCLllA-9399 - AGCGAGAGGGUGGACUACGGCU 22 11179
BCLllA-9400 - GAGCGAGAGGGUGGACUACGGCU 23 11180
BCLllA-9401 - AGAGCGAGAGGGUGGACUACGGCU 24 11181
BCLllA-9402 - CGGUUGAAUCCAAUGGCU 18 11182
BCLllA-9403 - GCGGUUGAAUCCAAUGGCU 19 11183
BCLllA-9404 - UGCGGUUGAAUCCAAUGGCU 20 11184
BCLllA-9405 - CUGCGGUUGAAUCCAAUGGCU 21 11185
BCLllA-9406 - GCUGCGGUUGAAUCCAAUGGCU 22 11186
BCLllA-9407 - UGCUGCGGUUGAAUCCAAUGGCU 23 11187
BCLllA-9408 - GUGCUGCGGUUGAAUCCAAUGGCU 24 11188
BCLllA-9409 - AGCUGGACGGAGGGAUCU 18 11189
BCLllA-9410 - GAGCUGGACGGAGGGAUCU 19 11190
BCLllA-6210 - GGAGCUGGACGGAGGGAUCU 20 11191
BCLllA-9411 - GGGAGCUGGACGGAGGGAUCU 21 11192
BCLllA-9412 - GGGGAGCUGGACGGAGGGAUCU 22 11193
BCLllA-9413 - CGGGGAGCUGGACGGAGGGAUCU 23 11194
BCLllA-9414 - CCGGGGAGCUGGACGGAGGGAUCU 24 11195 BCLllA-9415 - CCCGCCAUGGAUUUCUCU 18 11196
BCLllA-9416 - UCCCGCCAUGGAUUUCUCU 19 11197
BCLllA-6212 - CUCCCGCCAUGGAUUUCUCU 20 11198
BCLllA-9417 - CCUCCCGCCAUGGAUUUCUCU 21 11199
BCLllA-9418 - GCCUCCCGCCAUGGAUUUCUCU 22 11200
BCLllA-9419 - AGCCUCCCGCCAUGGAUUUCUCU 23 11201
BCLllA-9420 - GAGCCUCCCGCCAUGGAUUUCUCU 24 11202
BCLllA-9421 - CGAGAGCCCUUAAGUUCU 18 11203
BCLllA-9422 - UCGAGAGCCCUUAAGUUCU 19 11204
BCLllA-9423 - CUCGAGAGCCCUUAAGUUCU 20 11205
BCLllA-9424 - GCUCGAGAGCCCUUAAGUUCU 21 11206
BCLllA-9425 - AGCUCGAGAGCCCUUAAGUUCU 22 11207
BCLllA-9426 - AAGCUCGAGAGCCCUUAAGUUCU 23 11208
BCLllA-9427 - GAAGCUCGAGAGCCCUUAAGUUCU 24 11209
BCLllA-9428 - CGCCUUUUGCCUCCUCGU 18 11210
BCLllA-9429 - UCGCCUUUUGCCUCCUCGU 19 11211
BCLllA-6220 - AUCGCCUUUUGCCUCCUCGU 20 11212
BCLllA-9430 - AAUCGCCUUUUGCCUCCUCGU 21 11213
BCLllA-9431 - CAAUCGCCUUUUGCCUCCUCGU 22 11214
BCLllA-9432 - ACAAUCGCCUUUUGCCUCCUCGU 23 11215
BCLllA-9433 - GACAAUCGCCUUUUGCCUCCUCGU 24 11216
BCLllA-9434 - ACGCCCCAUAUUAGUGGU 18 11217
BCLllA-9435 - CACGCCCCAUAUUAGUGGU 19 11218
BCLllA-9436 - GCACGCCCCAUAUUAGUGGU 20 11219
BCLllA-9437 - AGCACGCCCCAUAUUAGUGGU 21 11220
BCLllA-9438 - GAGCACGCCCCAUAUUAGUGGU 22 11221
BCLllA-9439 - GGAGCACGCCCCAUAUUAGUGGU 23 11222
BCLllA-9440 - GGGAGCACGCCCCAUAUUAGUGGU 24 11223
BCLllA-9441 - GACACUUGUGAGUACUGU 18 11224
BCLllA-9442 - CGACACUUGUGAGUACUGU 19 11225
BCLllA-6230 - GCGACACUUGUGAGUACUGU 20 11226
BCLllA-9443 - AGCGACACUUGUGAGUACUGU 21 11227
BCLllA-9444 - CAGCGACACUUGUGAGUACUGU 22 11228
BCLllA-9445 - GCAGCGACACUUGUGAGUACUGU 23 11229
BCLllA-9446 - CGCAGCGACACUUGUGAGUACUGU 24 11230
BCLllA-9447 - CGCGGGUUGGUAUCCCUU 18 11231
BCLllA-9448 - CCGCGGGUUGGUAUCCCUU 19 11232
BCLllA-9449 - CCCGCGGGUUGGUAUCCCUU 20 11233
BCLllA-9450 - CCCCGCGGGUUGGUAUCCCUU 21 11234
BCLllA-9451 - ACCCCGCGGGUUGGUAUCCCUU 22 11235
BCLllA-9452 - GACCCCGCGGGUUGGUAUCCCUU 23 11236
BCLllA-9453 - UGACCCCGCGGGUUGGUAUCCCUU 24 11237 BCLllA-9454 - AGAUCCCUUCCUUAGCU U 18 11238
BCLllA-9455 - AAGAUCCCUUCCUUAGCUU 19 11239
BCLllA-6234 - AAAGAUCCCUUCCUUAGCUU 20 11240
BCLllA-9456 - CAAAGAUCCCUUCCUUAGCUU 21 11241
BCLllA-9457 - UCAAAGAUCCCU UCCUUAGCUU 22 11242
BCLllA-9458 - CUCAAAGAUCCCUUCCU UAGCUU 23 11243
BCLllA-9459 - GCUCAAAGAUCCCUUCCUUAGCUU 24 11244
BCLllA-9460 - CUCGAGAGCCCUUAAGUU 18 11245
BCLllA-9461 - GCUCGAGAGCCCU UAAGUU 19 11246
BCLllA-9462 - AGCUCGAGAGCCCUUAAGUU 20 11247
BCLllA-9463 - AAGCUCGAGAGCCCUUAAGUU 21 11248
BCLllA-9464 - GAAGCUCGAGAGCCCUUAAGUU 22 11249
BCLllA-9465 - GGAAGCUCGAGAGCCCU UAAGUU 23 11250
BCLllA-9466 - UGGAAGCUCGAGAGCCCUUAAGUU 24 11251
BCLllA-9467 - GGCAAGACGUUCAAAUUU 18 11252
BCLllA-9468 - CGGCAAGACGUUCAAAUUU 19 11253
BCLllA-9469 - GCGGCAAGACGUUCAAAUUU 20 11254
BCLllA-9470 - UGCGGCAAGACG U U CAAAU U U 21 11255
BCLllA-9471 - CUGCGGCAAGACGUUCAAAUUU 22 11256
BCLllA-9472 - UCUGCGGCAAGACGUUCAAAUUU 23 11257
BCLllA-9473 - U UCUGCGGCAAGACGUUCAAAUUU 24 11258
Table 17A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 17A
Figure imgf000398_0001
BCLllA-9480 + GGGGAAGGUGGCUUAUC 17 11265
BCLllA-9481 + GGUUCAUCAUCUGUAAG 17 11266
BCLllA-5334 + UGCACUCAUCCCAGGCG 17 11267
BCLllA-9482 + UUAAGUGCUGGGGUUUG 17 11268
BCLllA-9483 + CCAACCUCCACGGGAU U 17 11269
BCLllA-9484 + UCUCGAUUGGUGAAGGGGAA 20 11270
BCLllA-9485 + GGGAUUGGAUGCUUUU UUCA 20 11271
BCLllA-9486 - AUCCAGGUCACGCCAGAGGA 20 11272
BCLllA-9487 + U UACUUACGCGAGAAUUCCC 20 11273
BCLllA-6420 + UGACCUGGAUGCCAACCUCC 20 11274
BCLllA-9488 - GGAAACAAUGCAAUGGCAGC 20 11275
BCLllA-9489 + GAAGGGGAAGGUGGCU UAUC 20 11276
BCLllA-9490 + UCUGGUUCAUCAUCUGUAAG 20 11277
BCLllA-5480 + U UCUGCACUCAUCCCAGGCG 20 11278
BCLllA-9491 + UGCUUAAGUGCUGGGGUUUG 20 11279
BCLllA-9492 + AUGCCAACCUCCACGGGAUU 20 11280
Table 17B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 17B
Figure imgf000399_0001
BCLllA-9501 + U CAGAACU UAAGGGCU C 17 11291
BCLllA-9502 - AGCUCAAAGAUCCCUUC 17 11292
BCLllA-9503 + GCAGGUCGAACUCCUUC 17 11293
BCLllA-9504 + GGGGCGUCGCCAGGAAG 17 11294
BCLllA-9505 - CCAGGAUCAGUAUCGAG 17 11295
BCLllA-9506 + GGCUGGGAGGGAGGAGG 17 11296
BCLllA-9507 + GACUUGACCGUCAUGGG 17 11297
BCLllA-9508 + CGGCCUCGGCCAGGUGG 17 11298
BCLllA-5799 + GCAUGUGCGUCUUCAUG 17 11299
BCLllA-9509 + CGCACAGGUUGCACUUG 17 11300
BCLllA-9510 + ACUCCU UCUCGAGCUUG 17 11301
BCLllA-9511 - AACACG CACAG AACACU 17 11302
BCLllA-9512 - CCUCGGAGAACGGGAGU 17 11303
BCLllA-9513 + GGUCAGGGGACUUCCGU 17 11304
BCLllA-5874 + UGCUCCGACGAGGAGGCAAA 20 11305
BCLllA-5879 - AGGCU UCCGGCCUGGCAGAA 20 11306
BCLllA-9514 + ACUUCCGUGUUCGCUUUCUA 20 11307
BCLllA-9515 - CGGAGAGCGAGAGGGUGGAC 20 11308
BCLllA-9516 + UGGCGGGAGGCUCCAUAGCC 20 11309
BCLllA-8754 - UCCUUCCCAGCCACCUCUCC 20 11310
BCLllA-9517 + GCGAGCUGGGGCUGCCCAGC 20 11311
BCLllA-9518 - AUGGCUAUGGAGCCUCCCGC 20 11312
BCLllA-9519 + CCUCGGCCAGGUGGCCGCGC 20 11313
BCLllA-9520 + UGUGCGUCUUCAUGUGGCGC 20 11314
BCLllA-7725 + UUCUCAGAACUUAAGGGCUC 20 11315
BCLllA-9521 - GGCAGCUCAAAGAUCCCUUC 20 11316
BCLllA-7752 + GGGGCAGGUCGAACUCCUUC 20 11317
BCLllA-9522 + GGGGGGGCGUCGCCAGGAAG 20 11318
BCLllA-9523 - AUACCAGGAUCAGUAUCGAG 20 11319
BCLllA-9524 + GGGGGCUGGGAGGGAGGAGG 20 11320
BCLllA-9525 + UCGGACUUGACCGUCAUGGG 20 11321
BCLllA-9526 + CCUCGGCCUCGGCCAGGUGG 20 11322
BCLllA-6165 + UGUGCAUGUGCGUCUUCAUG 20 11323
BCLllA-8204 + GGUCGCACAGGU UGCACUUG 20 11324
BCLllA-9527 + CGAACUCCU UCUCGAGCUUG 20 11325
BCLllA-9528 - UGCAACACGCACAGAACACU 20 11326
BCLllA-9529 - ACUCCUCGGAGAACGGGAGU 20 11327
BCLllA-9530 + CGGGGUCAGGGGACUUCCGU 20 11328
Table 18A provides exemplary targeting domains for knocking down the BCLllA gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 18A
Figure imgf000401_0001
BCLllA-9553 + GCGGGCGGACGACGGCU 17 11357
BCLllA-5338 + CCGUU UGCUUAAGUGCU 17 11358
BCLllA-5340 + U UGCGGCGAGACAUGGU 17 11359
BCLllA-9554 + CGUGGCCGGGAGAGAAGAAA 20 11360
BCLllA-5345 + GCCUUGCU UGCGGCGAGACA 20 11361
BCLllA-5346 - ACCAUGUCUCGCCGCAAGCA 20 11362
BCLllA-9555 - UCCUGACGUUCAAGUUCGCA 20 11363
BCLllA-9556 + ACACCAAUGGACACACAUCA 20 11364
BCLllA-9557 + UACACGGCAAUGGUUCCAGA 20 11365
BCLllA-9558 + GCCAAUGGCCAGUGCGGGGA 20 11366
BCLllA-9559 + AAUGGUUCCAGAUGGGAUGA 20 11367
BCLllA-9560 - GAGUCUCCUUCUUUCUAACC 20 11368
BCLllA-9561 + CGGU UCACAUCGGGAGAGCC 20 11369
BCLllA-9562 + UCGGUUCACAUCGGGAGAGC 20 11370
BCLllA-9563 - CCGCGUGUGUGGGGGGGAGC 20 11371
BCLllA-9564 - UAAUAAUCACGAGAGCGCGC 20 11372
BCLllA-9565 + AAAUAAUACAAAGAUGGCGC 20 11373
BCLllA-9566 - CUCCUGACGUUCAAGUUCGC 20 11374
BCLllA-9567 + GAGACACACAAAACAUGGGC 20 11375
BCLllA-5352 + AUUCCCGU UUGCUUAAGUGC 20 11376
BCLllA-9568 + ACGACGGCUCGGUUCACAUC 20 11377
BCLllA-9569 - CGCACUUGAACUUGCAGCUC 20 11378
BCLllA-9570 + UCCCUGCGAACUUGAACGUC 20 11379
BCLllA-9571 - U CG AG G U A A A AG AG A U A A AG 20 11380
BCLllA-9572 + CCAAUGGCCAGUGCGGGGAG 20 11381
BCLllA-4351 + GACGCCAGACGCGGCCCCCG 20 11382
BCLllA-9573 - UGCGGCCACUGGUGAGCCCG 20 11383
BCLllA-9574 - GGGGCCGCGUCUGGCGUCCG 20 11384
BCLllA-5359 + GCGAGACAUGGUGGGCUGCG 20 11385
BCLllA-9575 - AG AAAAACCU CCG AG AG U CG 20 11386
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 11387
BCLllA-9576 + UCUUUUACCUCGACUCUCGG 20 11388
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 11389
BCLllA-9578 - U UUAGAGUCCGCGUGUGUGG 20 11390
BCLllA-9579 + CAAUGGUUCCAGAUGGGAUG 20 11391
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 11392
BCLllA-9580 + CUGAGCUGCAAGUUCAAGUG 20 11393
BCLllA-9581 - CAU UUUAGAGUCCGCGUGUG 20 11394
BCLllA-9582 + GACGACGGCUCGGUUCACAU 20 11395
BCLllA-9583 - AGCCCCUGAUGUGUGUCCAU 20 11396
BCLllA-9584 + GCGGCGGGCGGACGACGGCU 20 11397
BCLllA-9585 + AUCUCUUUUACCUCGACUCU 20 11398 BCLllA-5365 + UGCUUGCGGCGAGACAUGGU 20 11399
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 11400
Table 18B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1A gene.
Table 18B
Figure imgf000403_0001
BCLllA-4529 + AAAAAAAAAAAAAAAGA 17 11423
BCLllA-9603 + U AG AAA U A A U AC A A AG A 17 11424
BCLllA-9604 + GAGCCGGGUUAGAAAGA 17 11425
BCLllA-4592 + AGGGCGAGCAGGAGAGA 17 11426
BCLllA-4534 - AAAGCGAGGGGGAGAGA 17 11427
BCLllA-9605 + GAGAGAAGAGAGAUAGA 17 11428
BCLllA-4674 + CGGCGGCGGGCGGACGA 17 11429
BCLllA-4494 + GGGGAGGGGCGGGCCGA 17 11430
BCLllA-9606 - ACU AG AAG CAAAAG CG A 17 11431
BCLllA-4591 + AGGAGAGAAGGGGAGGA 17 11432
BCLllA-4399 + GAGAAGGGGAGGAGGGA 17 11433
BCLllA-4499 + GGGGCGGGCCGAGGGGA 17 11434
BCLllA-9607 + AAUGGCCAGUGCGGGGA 17 11435
BCLllA-4562 + ACGCGGCCCCCGGGGGA 17 11436
BCLllA-9608 + AACGUCAGGAGUCUGGA 17 11437
BCLllA-9609 - UUAAAAAAAAGCCAUGA 17 11438
BCLllA-9610 + GGUUCCAGAUGGGAUGA 17 11439
BCLllA-5383 - CC AG C ACU U AAG CAAAC 17 11440
BCLllA-9611 - CCUCCCCCUCCCCGCAC 17 11441
BCLllA-9612 - UCUCCUUCUUUCUAACC 17 11442
BCLllA-9613 + GACAUGAAAAAGAGACC 17 11443
BCLllA-4662 + CGCCAGACGCGGCCCCC 17 11444
BCLllA-9614 - CGGCCCGCCCCUCCCCC 17 11445
BCLllA-9615 - UCGGCCCGCCCCUCCCC 17 11446
BCLllA-9616 + GCGGCGGUGGCGUGGCC 17 11447
BCLllA-9617 - ACCCCUUUCUUCUCUCC 17 11448
BCLllA-9618 - UGGCCAUUGGCUUGUCC 17 11449
BCLllA-9619 + ACAUGGGCAGGGCGAGC 17 11450
BCLllA-9620 - CGUGUGUGGGGGGGAGC 17 11451
BCLllA-9621 + GGGGGCGCUGGGGCCGC 17 11452
BCLllA-4646 + CCGAGGGGAGGGGGCGC 17 11453
BCLllA-9622 + UAAUACAAAGAUGGCGC 17 11454
BCLllA-4441 + GCGGCGGCGGCGGCGGC 17 11455
BCLllA-9623 + GGACACACAUCAGGGGC 17 11456
BCLllA-4429 + GCCCCCGGGGGAGGGGC 17 11457
BCLllA-5392 + AUGGUGGGCUGCGGGGC 17 11458
BCLllA-9624 + AGGGGGAGGUGCGGGGC 17 11459
BCLllA-9625 + ACACACAAAACAUGGGC 17 11460
BCLllA-9626 + CGCGGCGGUGGCGUGGC 17 11461
BCLllA-9627 + GAGAAGAAAGGGGUGGC 17 11462
BCLllA-5395 + GAGACAUGGUGGGCUGC 17 11463
BCLllA-9628 + AAGCCAAUGGCCAGUGC 17 11464 BCLllA-9629 + CGGGGAGGGGGAGGUGC 17 11465
BCLllA-9630 + ACCAAUGGACACACAUC 17 11466
BCLllA-9631 - AAAACCCUCAUCCCAUC 17 11467
BCLllA-9632 - ACUUGAACUUGCAGCUC 17 11468
BCLllA-9633 - GAUGAAGAUAUUUUCUC 17 11469
BCLllA-4528 + AAAAAAAAAAAAAAAAG 17 11470
BCLllA-4433 + GCCGGGAGAGAAGAAAG 17 11471
BCLllA-9634 - AGG U AAAAG AG AU AAAG 17 11472
BCLllA-4475 + GGCGAGCAGGAGAGAAG 17 11473
BCLllA-4389 + GAAGGGGAGGAGGGAAG 17 11474
BCLllA-9635 + GGCCGCGGGCUCACCAG 17 11475
BCLllA-9636 + G A AG AAAG GG G U G G C AG 17 11476
BCLllA-9637 + CAAUGGACACACAUCAG 17 11477
BCLllA-9638 - UUGAACUUGCAGCUCAG 17 11478
BCLllA-4543 - AAGCGAGGGGGAGAGAG 17 11479
BCLllA-4533 - AAAAGCGAGGGGGAGAG 17 11480
BCLllA-4485 + GGGAGGGGCGGGCCGAG 17 11481
BCLllA-9639 - CUAGAAGCAAAAGCGAG 17 11482
BCLllA-4492 + GGGCGGGCCGAGGGGAG 17 11483
BCLllA-9640 + AUGGCCAGUGCGGGGAG 17 11484
BCLllA-4665 + CGCGGCCCCCGGGGGAG 17 11485
BCLllA-9641 + AGAGAGAAGAGAGAUAG 17 11486
BCLllA-9642 + GCUCCCCCCCACACACG 17 11487
BCLllA-4427 + GCCAGACGCGGCCCCCG 17 11488
BCLllA-9643 - GGCCCGCCCCUCCCCCG 17 11489
BCLllA-9644 - GGCCACUGGUGAGCCCG 17 11490
BCLllA-4670 - CGGCCACGCCACCGCCG 17 11491
BCLllA-4470 + GGCCGCAGCGAGCGCCG 17 11492
BCLllA-4502 + GGGGGAGGGGCGGGCCG 17 11493
BCLllA-9645 + AGGGGGCGCUGGGGCCG 17 11494
BCLllA-9646 + CGGGGCGGGGGGCUCCG 17 11495
BCLllA-9647 - GCCGCGUCUGGCGUCCG 17 11496
BCLllA-9648 + GGGGGAGGUGCGGGGCG 17 11497
BCLllA-9649 + GCGCCGCGGCGGUGGCG 17 11498
BCLllA-9650 + AGCCAAUGGCCAGUGCG 17 11499
BCLllA-9651 + GGGGAGGGGGAGGUGCG 17 11500
BCLllA-9652 - GGU AAAAG AGAUAAAGG 17 11501
BCLllA-9653 - UGAACUUGCAGCUCAGG 17 11502
BCLllA-9654 - UAGAAGCAAAAGCGAGG 17 11503
BCLllA-4627 + CAGGAGAGAAGGGGAGG 17 11504
BCLllA-4480 + GGCGGGCCGAGGGGAGG 17 11505
BCLllA-9655 + UGGCCAGUGCGGGGAGG 17 11506 BCLllA-4634 + CCAGACGCGGCCCCCGG 17 11507
BCLllA-9656 - GCCCGCCCCUCCCCCGG 17 11508
BCLllA-4660 + CGCAGCGAGCGCCGCGG 17 11509
BCLllA-4588 + AGCGAGCGCCGCGGCGG 17 11510
BCLllA-4478 + GGCGGCGGCGGCGGCGG 17 11511
BCLllA-4447 + GCGGGCGGCGGCGGCGG 17 11512
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 11513
BCLllA-5409 + UGCGGGGCGGGCGGCGG 17 11514
BCLllA-5410 + GGCUGCGGGGCGGGCGG 17 11515
BCLllA-9657 + GGGGAGGUGCGGGGCGG 17 11516
BCLllA-9658 + GGGGUGGGAGGAAAGGG 17 11517
BCLllA-9659 - GAACUUGCAGCUCAGGG 17 11518
BCLllA-4444 + GCGGCGGCGGCGGCGGG 17 11519
BCLllA-5411 + GUGGGCUGCGGGGCGGG 17 11520
BCLllA-9660 + GGGAGGUGCGGGGCGGG 17 11521
BCLllA-4483 + GGGAGAGAAGAAAGGGG 17 11522
BCLllA-4407 + GAGCAGGAGAGAAGGGG 17 11523
BCLllA-9661 + GAAAGGGGUGGCAGGGG 17 11524
BCLllA-4593 + AGGGGCGGGCCGAGGGG 17 11525
BCLllA-4467 + GGCCCCCGGGGGAGGGG 17 11526
BCLllA-5413 + CAUGGUGGGCUGCGGGG 17 11527
BCLllA-9662 + CAAUGGCCAGUGCGGGG 17 11528
BCLllA-9663 + GAGGGGGAGGUGCGGGG 17 11529
BCLllA-9664 + CCAGUGCGGGGAGGGGG 17 11530
BCLllA-4395 + GACGCGGCCCCCGGGGG 17 11531
BCLllA-9665 + GGGAGGAAAGGGUGGGG 17 11532
BCLllA-9666 + UGGGAGGAAAGGGUGGG 17 11533
BCLllA-9667 + GGGGUGGCAGGGGUGGG 17 11534
BCLllA-9668 - GAGUCCGCGUGUGUGGG 17 11535
BCLllA-5414 + CUUGCGGCGAGACAUGG 17 11536
BCLllA-9669 + GUGGGAGGAAAGGGUGG 17 11537
BCLllA-9670 - AGAGUCCGCGUGUGUGG 17 11538
BCLllA-9671 + UGGUUCCAGAUGGGAUG 17 11539
BCLllA-9672 + GAGGGGAGGGGGCGCUG 17 11540
BCLllA-9673 - CGCCGCGGCGCUCGCUG 17 11541
BCLllA-5422 + CGAGACAUGGUGGGCUG 17 11542
BCLllA-9674 + AG C U G C A AG U U C A AG U G 17 11543
BCLllA-9675 + CAAGCCAAUGGCCAGUG 17 11544
BCLllA-9676 + GCGGGGAGGGGGAGGUG 17 11545
BCLllA-9677 + GGUGGGAGGAAAGGGUG 17 11546
BCLllA-9678 - UUUAGAGUCCGCGUGUG 17 11547
BCLllA-9679 + GCAGGGAAGAUGAAUUG 17 11548 BCLllA-5426 + GGGGUUUGCCUUGCUUG 17 11549
BCLllA-9680 + AGAGACACACAAAACAU 17 11550
BCLllA-9681 - CCCUGAUGUGUGUCCAU 17 11551
BCLllA-5431 + AUUAUUAUUACUAUUAU 17 11552
BCLllA-9682 - CCAGCGCCCCCUCCCCU 17 11553
BCLllA-9683 + CGAGGGGAGGGGGCGCU 17 11554
BCLllA-9684 + UCU UUUACCUCGACUCU 17 11555
BCLllA-9685 + GGGUGGGAGGAAAGGGU 17 11556
BCLllA-9686 + AAAGGGGUGGCAGGGGU 17 11557
BCLllA-9687 - U UAGAGUCCGCGUGUGU 17 11558
BCLllA-9688 + CAGGGAAGAUGAAUUGU 17 11559
BCLllA-5439 + UUAUUAUUACUAUUAUU 17 11560
BCLllA-9689 - U UAUUUCUAAUUUAU UU 17 11561
BCLllA-9690 + AGAGAGAGAGAUGAAAAAAA 20 11562
BCLllA-5443 - AACCCCAGCACUUAAGCAAA 20 11563
BCLllA-9691 - AAUUUAUUUUGGAUGUCAAA 20 11564
BCLllA-9692 + GUGGCAGGGGUGGGAGGAAA 20 11565
BCLllA-9693 - GUCGAGGU A A A AG AG A U AAA 20 11566
BCLllA-9694 + UAAAAU U AAAU AAAAU U AAA 20 11567
BCLllA-9695 + GAAGGGGAAGCUCACACCAA 20 11568
BCLllA-4541 + AAGAGACCAGGACAAGCCAA 20 11569
BCLllA-9696 + CAAAAGUGCAUACACGGCAA 20 11570
BCLllA-9697 + GCGUGGCCGGGAGAGAAGAA 20 11571
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 11572
BCLllA-9698 + GGUGGCAGGGGUGGGAGGAA 20 11573
BCLllA-4404 + GAGAGAAGGGGAGGAGGGAA 20 11574
BCLllA-9699 - AGUCGAGGUAAAAGAGAUAA 20 11575
BCLllA-4455 + GGACAGAGACACACAAAACA 20 11576
BCLllA-9700 + CUGUCUCAAAAGUGCAUACA 20 11577
BCLllA-9701 - CGCGUGUGUGGGGGGGAGCA 20 11578
BCLllA-9702 + AAUAAUACAAAGAUGGCGCA 20 11579
BCLllA-9703 + AGACACACAAAACAUGGGCA 20 11580
BCLllA-9704 + G AG AG A AG A A AG G G G U G G C A 20 11581
BCLllA-9705 - GCACUUGAACUUGCAGCUCA 20 11582
BCLllA-9706 + GAAUUGUGGGAGAGCCGUCA 20 11583
BCLllA-4527 + AAAAAAAAAAAAAAAAAAGA 20 11584
BCLllA-9707 + AAU U AG AAAU AAU ACAAAG A 20 11585
BCLllA-9708 + GGAGAGCCGGGUUAGAAAGA 20 11586
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 11587
BCLllA-4418 - GCAAAAGCGAGGGGGAGAGA 20 11588
BCLllA-9709 + AGAGAGAGAAGAGAGAUAGA 20 11589
BCLllA-4673 + CGGCGGCGGCGGGCGGACGA 20 11590 BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 11591
BCLllA-9710 - AGGACUAGAAGCAAAAGCGA 20 11592
BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 11593
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 11594
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 11595
BCLllA-4624 + CAGACGCGGCCCCCGGGGGA 20 11596
BCLllA-9711 + UUGAACGUCAGGAGUCUGGA 20 11597
BCLllA-9712 - UGCUUAAAAAAAAGCCAUGA 20 11598
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 11599
BCLllA-9713 - GCGGCGCUCGCUGCGGCCAC 20 11600
BCLllA-9714 - GCACCUCCCCCUCCCCGCAC 20 11601
BCLllA-9715 + CUGGACAUGAAAAAGAGACC 20 11602
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 11603
BCLllA-9716 - CCUCGGCCCGCCCCUCCCCC 20 11604
BCLllA-4362 + CGGACGCCAGACGCGGCCCC 20 11605
BCLllA-9717 - CCCUCGGCCCGCCCCUCCCC 20 11606
BCLllA-9718 + GCCGCGGCGGUGGCGUGGCC 20 11607
BCLllA-9719 - GCCACCCCUUUCUUCUCUCC 20 11608
BCLllA-9720 - CACUGGCCAUUGGCUUGUCC 20 11609
BCLllA-9721 + AAAACAUGGGCAGGGCGAGC 20 11610
BCLllA-9722 + GGAGGGGGCGCUGGGGCCGC 20 11611
BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 11612
BCLllA-4442 + GCGGCGGCGGCGGCGGCGGC 20 11613
BCLllA-9723 + AAUGGACACACAUCAGGGGC 20 11614
BCLllA-4439 + GCGGCCCCCGGGGGAGGGGC 20 11615
BCLllA-5465 + GACAUGGUGGGCUGCGGGGC 20 11616
BCLllA-9724 + GGGAGGGGGAGGUGCGGGGC 20 11617
BCLllA-9725 + CGCCGCGGCGGUGGCGUGGC 20 11618
BCLllA-9726 + GGAGAGAAGAAAGGGGUGGC 20 11619
BCLllA-5468 + GGCGAGACAUGGUGGGCUGC 20 11620
BCLllA-9727 + GACAAGCCAAUGGCCAGUGC 20 11621
BCLllA-9728 + GUGCGGGGAGGGGGAGGUGC 20 11622
BCLllA-9729 + CACACCAAUGGACACACAUC 20 11623
BCLllA-9730 - GAAAAAACCCUCAUCCCAUC 20 11624
BCLllA-9731 - ACUGAUGAAGAUAUUUUCUC 20 11625
BCLllA-9732 + GAACUUGAACGUCAGGAGUC 20 11626
BCLllA-9733 - CCUCCCCCGGGGGCCGCGUC 20 11627
BCLllA-4526 + AAAAAAAAAAAAAAAAAAAG 20 11628
BCLllA-9734 + GUGGCCGGGAGAGAAGAAAG 20 11629
BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 11630
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 11631
BCLllA-9735 + UGGGGCCGCGGGCUCACCAG 20 11632 BCLllA-9736 + AGAGAAGAAAGGGGUGGCAG 20 11633
BCLllA-9737 + CACCAAUGGACACACAUCAG 20 11634
BCLllA-9738 - CACUUGAACUUGCAGCUCAG 20 11635
BCLllA-4611 - CAAAAGCGAGGGGGAGAGAG 20 11636
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 11637
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 11638
BCLllA-9739 - GGACUAGAAGCAAAAGCGAG 20 11639
BCLllA-4411 + GAGGGGCGGGCCGAGGGGAG 20 11640
BCLllA-4575 + AGACGCGGCCCCCGGGGGAG 20 11641
BCLllA-9740 + GAGAGAGAGAAGAGAGAUAG 20 11642
BCLllA-9741 + CCUGCUCCCCCCCACACACG 20 11643
BCLllA-9742 + GGCUCCGCGGACGCCAGACG 20 11644
BCLllA-9743 - CUCGGCCCGCCCCUCCCCCG 20 11645
BCLllA-9744 - UCCCGGCCACGCCACCGCCG 20 11646
BCLllA-9745 + AGUGGCCGCAGCGAGCGCCG 20 11647
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 11648
BCLllA-9746 + GGGAGGGGGCGCUGGGGCCG 20 11649
BCLllA-9747 + GUGCGGGGCGGGGGGCUCCG 20 11650
BCLllA-9748 - CAGGACUAGAAGCAAAAGCG 20 11651
BCLllA-9749 + GGAGGGGGAGGUGCGGGGCG 20 11652
BCLllA-9750 + CGAGCGCCGCGGCGGUGGCG 20 11653
BCLllA-9751 + ACAAGCCAAUGGCCAGUGCG 20 11654
BCLllA-9752 + UGCGGGGAGGGGGAGGUGCG 20 11655
BCLllA-9753 - CGAGGUAAAAGAGAUAAAGG 20 11656
BCLllA-9754 - ACU UGAACUUGCAGCUCAGG 20 11657
BCLllA-9755 - GACUAGAAGCAAAAGCGAGG 20 11658
BCLllA-4408 + GAGCAGGAGAGAAGGGGAGG 20 11659
BCLllA-4594 + AGGGGCGGGCCGAGGGGAGG 20 11660
BCLllA-9756 + CAAUGGCCAGUGCGGGGAGG 20 11661
BCLllA-9757 - UCGGCCCGCCCCUCCCCCGG 20 11662
BCLllA-4471 + GGCCGCAGCGAGCGCCGCGG 20 11663
BCLllA-4661 + CGCAGCGAGCGCCGCGGCGG 20 11664
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 11665
BCLllA-4448 + GCGGGCGGCGGCGGCGGCGG 20 11666
BCLllA-4501 + GGGGCGGGCGGCGGCGGCGG 20 11667
BCLllA-5484 + UGCGGGGCGGGCGGCGGCGG 20 11668
BCLllA-5485 + GGCUGCGGGGCGGGCGGCGG 20 11669
BCLllA-5486 + GUGGGCUGCGGGGCGGGCGG 20 11670
BCLllA-9758 + GAGGGGGAGGUGCGGGGCGG 20 11671
BCLllA-9759 + GCAGGGGUGGGAGGAAAGGG 20 11672
BCLllA-9760 - CUUGAACUUGCAGCUCAGGG 20 11673
BCLllA-4443 + GCGGCGGCGGCGGCGGCGGG 20 11674 BCLllA-5487 + AUGGUGGGCUGCGGGGCGGG 20 11675
BCLllA-9761 + AGGGGGAGGUGCGGGGCGGG 20 11676
BCLllA-4434 + GCCGGGAGAGAAGAAAGGGG 20 11677
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 11678
BCLllA-9762 + GAAGAAAGGGGUGGCAGGGG 20 11679
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 11680
BCLllA-4666 + CGCGGCCCCCGGGGGAGGGG 20 11681
BCLllA-5489 + AGACAUGGUGGGCUGCGGGG 20 11682
BCLllA-9763 + AGCCAAUGGCCAGUGCGGGG 20 11683
BCLllA-9764 + GGGGAGGGGGAGGUGCGGGG 20 11684
BCLllA-9765 + UGGCCAGUGCGGGGAGGGGG 20 11685
BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 11686
BCLllA-9766 + GGUGGGAGGAAAGGGUGGGG 20 11687
BCLllA-9767 + GGGUGGGAGGAAAGGGUGGG 20 11688
BCLllA-9768 + AAAGGGGUGGCAGGGGUGGG 20 11689
BCLllA-9769 - UUAGAGUCCGCGUGUGUGGG 20 11690
BCLllA-5490 + UUGCUUGCGGCGAGACAUGG 20 11691
BCLllA-9770 + GGGGUGGGAGGAAAGGGUGG 20 11692
BCLllA-9771 + GCCGAGGGGAGGGGGCGCUG 20 11693
BCLllA-9772 - CACCGCCGCGGCGCUCGCUG 20 11694
BCLllA-5497 + UCCCGU UUGCUUAAGUGCUG 20 11695
BCLllA-9773 + GGACAAGCCAAUGGCCAGUG 20 11696
BCLllA-9774 + AGUGCGGGGAGGGGGAGGUG 20 11697
BCLllA-9775 + AGGGGUGGGAGGAAAGGGUG 20 11698
BCLllA-9776 - U UUUAGAGUCCGCGUGUGUG 20 11699
BCLllA-9777 + GGCGCAGGGAAGAUGAAUUG 20 11700
BCLllA-5500 + GCUGGGGUUUGCCU UGCUUG 20 11701
BCLllA-9778 + GACAGAGACACACAAAACAU 20 11702
BCLllA-9779 - CCCCUCCCCGCACUGGCCAU 20 11703
BCLllA-9780 + ACACGGCAAUGGUUCCAGAU 20 11704
BCLllA-9781 + AUAAUUAUUAUUACUAUUAU 20 11705
BCLllA-9782 - GCCCCAGCGCCCCCUCCCCU 20 11706
BCLllA-9783 + GGCCGAGGGGAGGGGGCGCU 20 11707
BCLllA-5509 + UUCCCGU UUGCUUAAGUGCU 20 11708
BCLllA-9784 + CAGGGGUGGGAGGAAAGGGU 20 11709
BCLllA-9785 + AAGAAAGGGGUGGCAGGGGU 20 11710
BCLllA-9786 + GCGCAGGGAAGAUGAAUUGU 20 11711
BCLllA-9787 + UAAUUAUUAUUACUAUUAUU 20 11712
BCLllA-9788 - GUAUUAUUUCUAAUU UAUUU 20 11713
Table 18C provides exemplary targeting domains for knocking down the BCLllA gene selected according to the third tier parameters. The targeting domains binds within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 18C
Figure imgf000411_0001
BCLllA-9816 - CGCGGCGGCGGCGGGGA 17 11742
BCLllA-9817 + GGCGAGGGGAGGUGGGA 17 11743
BCLllA-9818 + UCCAGCCUAAGUUUGGA 17 11744
BCLllA-9819 - AAUAAUGAACAAUGCUA 17 11745
BCLllA-9820 - GGAAGUGGGUGUGCGUA 17 11746
BCLllA-9821 - AAGAAAAUGGGGGGGUA 17 11747
BCLllA-9822 + ACCCCCCCAUUUUCUUA 17 11748
BCLllA-9823 + UCAUUAUUUUGCAAAAC 17 11749
BCLllA-9824 + AUAGAGCGAGAGUGCAC 17 11750
BCLllA-9825 - GAGAAAAGAGGUGAGAC 17 11751
BCLllA-9826 - AGAGGGGCCGCGGCGAC 17 11752
BCLllA-9827 - GUGGGACCGGGAAGGAC 17 11753
BCLllA-9828 + AAGGCCGAGCCAGGGAC 17 11754
BCLllA-9829 + GCCUGGAAAGAGGGGAC 17 11755
BCLllA-9830 - GGGGAGAGCCGUGGGAC 17 11756
BCLllA-9831 - CAACUCACAUGCAAACC 17 11757
BCLllA-9832 + UAGAGCGAGAGUGCACC 17 11758
BCLllA-9833 + AGGCCGAGCCAGGGACC 17 11759
BCLllA-9834 + CCUGGAAAGAGGGGACC 17 11760
BCLllA-9835 - GGGAGAGCCGUGGGACC 17 11761
BCLllA-9836 - CCGGGAGCAACUCUACC 17 11762
BCLllA-9837 + CACCAGCUCCCACCCCC 17 11763
BCLllA-9838 + CGGGAGGCUGCAGCCCC 17 11764
BCLllA-9839 - GCUUUUACUUCGGCCCC 17 11765
BCLllA-9840 - CUGUGGAAAGGGGCCCC 17 11766
BCLllA-9841 + UCACCUCUUUUCUCCCC 17 11767
BCLllA-9842 - CCGCGCUUCCCCAGCCC 17 11768
BCLllA-9843 + CCGGGAGGCUGCAGCCC 17 11769
BCLllA-9844 - GGGGCGCCCUCGGGCCC 17 11770
BCLllA-9845 - CGCCGCCUGCCUCUCCC 17 11771
BCLllA-9846 + CUCACCUCUUUUCUCCC 17 11772
BCLllA-9847 - UCUAAAAAACGAUUCCC 17 11773
BCLllA-9848 + GCGGGCGGAGGGAAGCC 17 11774
BCLllA-9849 - CCCGCGCUUCCCCAGCC 17 11775
BCLllA-9850 + GCCCCCAAGGCCGAGCC 17 11776
BCLllA-9851 + CCCCGCGUGUGGACGCC 17 11777
BCLllA-9852 + GCGGACUCAGGAGCGCC 17 11778
BCLllA-9853 + GGCAGGCGGCGCAGGCC 17 11779
BCLllA-9854 + CAGGAGCCCGCGCGGCC 17 11780
BCLllA-9855 - CCGGGGCUGCAGCCUCC 17 11781
BCLllA-9856 - CAGGCCGCGCGGGCUCC 17 11782
BCLllA-9857 + CCAGGUAGAGUUGCUCC 17 11783 BCLllA-9858 + GCAGCGCCCAAGUCUCC 17 11784
BCLllA-9859 - UACGGAGGAGGGUGUCC 17 11785
BCLllA-9860 - GUCUAAAAAACGAUUCC 17 11786
BCLllA-9861 + GCGUCUCCCGUCCUUCC 17 11787
BCLllA-9862 - CCCGGUCCCCUCUUUCC 17 11788
BCLllA-9863 + AGUUACAGCUCCGCAGC 17 11789
BCLllA-9864 + CCGG CAC AAAAG G C AG C 17 11790
BCLllA-9865 - ACGGUCAAGUGUGCAGC 17 11791
BCLllA-9866 + GGGCAAGCGCGAGGAGC 17 11792
BCLllA-9620 - CGUGUGUGGGGGGGAGC 17 11793
BCLllA-9867 - AACCUGGGGGUGGGAGC 17 11794
BCLllA-9868 - CCCUGGCGUCCACACGC 17 11795
BCLllA-9869 - UUCCCGAGCGCAGCCGC 17 11796
BCLllA-9870 + CCGGGCUGGGGAAGCGC 17 11797
BCLllA-9871 + CGCGGACUCAGGAGCGC 17 11798
BCLllA-9872 - CUCUUUCCAGGCCGCGC 17 11799
BCLllA-9873 + CUUGACCGUGAGCGCGC 17 11800
BCLllA-9874 + GGAGAGGCAGGCGGCGC 17 11801
BCLllA-9875 + AGGCAGGCGGCGCAGGC 17 11802
BCLllA-9876 + GGGGACCGGGGAGAGGC 17 11803
BCLllA-9877 - GCCCUCCAAACUUAGGC 17 11804
BCLllA-9878 - AGGACGGGAGACGCGGC 17 11805
BCLllA-9879 - GCGAGCGCGGCGGCGGC 17 11806
BCLllA-9880 + AGGCUGCAGCCCCGGGC 17 11807
BCLllA-9881 + UGCAAAACUGGCGGGGC 17 11808
BCLllA-9882 + UAUUUUGCAAAACUGGC 17 11809
BCLllA-9883 + AAACACCCACCUCUGGC 17 11810
BCLllA-9884 + UAAGUUUGGAGGGCUGC 17 11811
BCLllA-9885 + AC A A A AG GCGGCAGUGC 17 11812
BCLllA-9886 - CCCGCUGCCUUUUGUGC 17 11813
BCLllA-9887 + CCCGACUCCGCGGACUC 17 11814
BCLllA-9888 + GGACAAACACCCACCUC 17 11815
BCLllA-9889 - GCCUUGGGGGCGCCCUC 17 11816
BCLllA-9890 - UUUGCUGUCCUCUCCUC 17 11817
BCLllA-9891 + AGCCCGCGGCUGCGCUC 17 11818
BCLllA-9892 - AGCGCAGCCGCGGGCUC 17 11819
BCLllA-9893 - CCUGAGUCCGCGGAGUC 17 11820
BCLllA-9894 + UUGGAGGGCUGCGGGUC 17 11821
BCLllA-9895 - GUACGGAGGAGGGUGUC 17 11822
BCLllA-9896 - GCUCAGCUCUCAACUUC 17 11823
BCLllA-9897 - CUUGGGCGCUGCCCUUC 17 11824
BCLllA-9898 - ACUGCCGCCUUUUGUUC 17 11825 BCLllA-9899 - AUUCCCGGGGAGAAAAG 17 11826
BCLllA-9900 - CCACAAUAGUGAGAAAG 17 11827
BCLllA-9901 + GGCGGAAAGGAGGAAAG 17 11828
BCLllA-9902 + CCGCGCGGCCUGGAAAG 17 11829
BCLllA-9903 - AGUGGCACUGUGGAAAG 17 11830
BCLllA-9904 + CG A A A AG AG A A A U A A AG 17 11831
BCLllA-9905 - GCGGCGGGGAGGGGAAG 17 11832
BCLllA-9906 + CCGCGUGUGGACGCCAG 17 11833
BCLllA-9907 - CCUUUUGUUCCGGCCAG 17 11834
BCLllA-9908 + AAGUUACAGCUCCGCAG 17 11835
BCLllA-9909 + G CCGG CAC AAAAG G C AG 17 11836
BCLllA-9910 - C ACG G U CAAG U G U G C AG 17 11837
BCLllA-9911 + GCGCGGCCUGGAAAGAG 17 11838
BCLllA-9912 - CCGCGGAGUCGGGAGAG 17 11839
BCLllA-9913 + GCUCCGCAGCGGGCGAG 17 11840
BCLllA-9914 + AAACUUUGCCCGAGGAG 17 11841
BCLllA-9915 - GUCCGCGGAGUCGGGAG 17 11842
BCLllA-9916 + AAGAGGGGACCGGGGAG 17 11843
BCLllA-9917 - GCGGCGGCGGCGGGGAG 17 11844
BCLllA-9918 + GCGGGGCGGGGGGGGAG 17 11845
BCLllA-9919 + CAUUUUCUUACGGUGAG 17 11846
BCLllA-9920 + GGGAGCGCACGGCAACG 17 11847
BCLllA-9642 + GCUCCCCCCCACACACG 17 11848
BCLllA-9921 - CCCCUGGCGUCCACACG 17 11849
BCLllA-9922 - GGGAAGGACGGGAGACG 17 11850
BCLllA-9923 - GAGGGGCCGCGGCGACG 17 11851
BCLllA-9924 + CUGGAAAGAGGGGACCG 17 11852
BCLllA-9925 - CGCGCUUCCCCAGCCCG 17 11853
BCLllA-9926 + UAAAAGCCCCGAGCCCG 17 11854
BCLllA-9927 + GCGCAGGCCGGGGCCCG 17 11855
BCLllA-9928 + UCGGGAAACUUUGCCCG 17 11856
BCLllA-9929 - CUAAAAAACGAUUCCCG 17 11857
BCLllA-9930 - UUUCCCGAGCGCAGCCG 17 11858
BCLllA-9931 - GGCGACGGGGAGAGCCG 17 11859
BCLllA-9932 + CGGACUCAGGAGCGCCG 17 11860
BCLllA-9933 + GGCUCUCCCCGUCGCCG 17 11861
BCLllA-9934 + GCAGGCGGCGCAGGCCG 17 11862
BCLllA-9935 - AGUCGGGAGAGGGGCCG 17 11863
BCLllA-9936 + CCCCUCUCCCGACUCCG 17 11864
BCLllA-9937 - CGGCGCUCCUGAGUCCG 17 11865
BCLllA-9938 + CCCGGGCUGGGGAAGCG 17 11866
BCLllA-9939 - CACGCGGGGAGCGAGCG 17 11867 BCLllA-9940 - CCUGGCGUCCACACGCG 17 11868
BCLllA-9941 + GUCUCCAGGAGCCCGCG 17 11869
BCLllA-9942 - CCUCUUUCCAGGCCGCG 17 11870
BCLllA-9943 + GCGGGAGGGCAAGCGCG 17 11871
BCLllA-9944 - CGAGCGCGGCGGCGGCG 17 11872
BCLllA-9945 + CAGCUCCGCAGCGGGCG 17 11873
BCLllA-9946 + GCAAAACUGGCGGGGCG 17 11874
BCLllA-9947 + AUUUUGCAAAACUGGCG 17 11875
BCLllA-9948 - GCGCAGCCGCGGGCUCG 17 11876
BCLllA-9949 + CUGGCCGGAACAAAAGG 17 11877
BCLllA-9950 + A U A A AG CG G CG G A A AG G 17 11878
BCLllA-9951 + GACCGGGGAGAGGCAGG 17 11879
BCLllA-9952 + GGAAAGGAGGAAAGAGG 17 11880
BCLllA-9953 - UUUGUUCCGGCCAGAGG 17 11881
BCLllA-9954 - GGGUGUGCGUACGGAGG 17 11882
BCLllA-9955 + CAGCGGGCGAGGGGAGG 17 11883
BCLllA-9956 - AGUGGGUGUGCGUACGG 17 11884
BCLllA-9957 + GGACUCAGGAGCGCCGG 17 11885
BCLllA-9958 + AAAGAGAAAUAAAGCGG 17 11886
BCLllA-9959 - GCGGGGAGCGAGCGCGG 17 11887
BCLllA-9960 - GGGAGCGAGCGCGGCGG 17 11888
BCLllA-9961 - AGCGAGCGCGGCGGCGG 17 11889
BCLllA-9962 + UGGGGAAGCGCGGGCGG 17 11890
BCLllA-9963 + CAAAACUGGCGGGGCGG 17 11891
BCLllA-9964 - AGCUGGUGGGGAAAGGG 17 11892
BCLllA-9965 - AAAAUGGGGGGGUAGGG 17 11893
BCLllA-9966 + AGCGAGAGUGCACCGGG 17 11894
BCLllA-9967 - GUCAAGUGUGCAGCGGG 17 11895
BCLllA-9968 + GGCUGGGGAAGCGCGGG 17 11896
BCLllA-9969 + AAAACUGGCGGGGCGGG 17 11897
BCLllA-9970 + CCGCAGCGGGCGAGGGG 17 11898
BCLllA-9971 - GCGCGGCGGCGGCGGGG 17 11899
BCLllA-9972 + AAACUGGCGGGGCGGGG 17 11900
BCLllA-9973 + UUGCAAAACUGGCGGGG 17 11901
BCLllA-9974 + AACUGGCGGGGCGGGGG 17 11902
BCLllA-9975 - ACAUGCAAACCUGGGGG 17 11903
BCLllA-9976 - ACCGUAAGAAAAUGGGG 17 11904
BCLllA-9548 - AGUCCGCGUGUGUGGGG 17 11905
BCLllA-9977 - CACCGUAAGAAAAUGGG 17 11906
BCLllA-9978 + GGGCGAGGGGAGGUGGG 17 11907
BCLllA-9668 - GAGUCCGCGUGUGUGGG 17 11908
BCLllA-9979 - U C A CCG U A AG A A A A U G G 17 11909 BCLllA-9980 + UUAUUUUGCAAAACUGG 17 11910
BCLllA-9981 - CUCACAUGCAAACCUGG 17 11911
BCLllA-9982 - CUGGGGGUGGGAGCUGG 17 11912
BCLllA-9670 - AGAGUCCGCGUGUGUGG 17 11913
BCLllA-9983 - GCGGAGCUGUAACUUGG 17 11914
BCLllA-9984 - CCCUGGCUCGGCCUUGG 17 11915
BCLllA-9985 + AUCCAGCCUAAGUUUGG 17 11916
BCLllA-9986 - CUCACCGUAAGAAAAUG 17 11917
BCLllA-9987 - GUGAGAAAGUGGCACUG 17 11918
BCLllA-9988 - ACUCACAUGCAAACCUG 17 11919
BCLllA-9989 - CCUCCCCUCGCCCGCUG 17 11920
BCLllA-9990 + CUAAGUUUGGAGGGCUG 17 11921
BCLllA-9991 + GCUGCAGCCCCGGGCUG 17 11922
BCLllA-9992 + CGCUCGCUCCCCGCGUG 17 11923
BCLllA-9993 - GGGGGUGGGAGCUGGUG 17 11924
BCLllA-9678 - UUUAGAGUCCGCGUGUG 17 11925
BCLllA-9549 - UAGAGUCCGCGUGUGUG 17 11926
BCLllA-9994 + ACUUUCUCACUAUUGUG 17 11927
BCLllA-9995 + CCACUUUCUCACUAUUG 17 11928
BCLllA-9996 - UCCCUGGCUCGGCCUUG 17 11929
BCLllA-9997 - ACUCACCGUAAGAAAAU 17 11930
BCLllA-9998 - GCUGCGGAGCUGUAACU 17 11931
BCLllA-9999 - GCGGGCUCCUGGAGACU 17 11932
BCLllA-10000 - AACUCACAUGCAAACCU 17 11933
BCLllA-10001 - GGCCUUGGGGGCGCCCU 17 11934
BCLllA-10002 - GGUCCCUGGCUCGGCCU 17 11935
BCLllA-10003 - CUUUGCUGUCCUCUCCU 17 11936
BCLllA-10004 + GAGCCCGCGGCUGCGCU 17 11937
BCLllA-10005 + GGCUGCAGCCCCGGGCU 17 11938
BCLllA-10006 - GAGCGCAGCCGCGGGCU 17 11939
BCLllA-10007 - CGGCGGGGAGGGGAAGU 17 11940
BCLllA-10008 - UCCUGAGUCCGCGGAGU 17 11941
BCLllA-10009 + AUUUUCUUACGGUGAGU 17 11942
BCLllA-10010 - GCGACGGGGAGAGCCGU 17 11943
BCLllA-10011 - UUGUUCCGGCCAGAGGU 17 11944
BCLllA-10012 + AGCGGGCGAGGGGAGGU 17 11945
BCLllA-10013 - UAAGAAAAUGGGGGGGU 17 11946
BCLllA-10014 - CAUGCAAACCUGGGGGU 17 11947
BCLllA-10015 - UGGGGGUGGGAGCUGGU 17 11948
BCLllA-9687 - UUAGAGUCCGCGUGUGU 17 11949
BCLllA-10016 + CACUUUCUCACUAUUGU 17 11950
BCLllA-10017 - CGCAGCCCUCCAAACUU 17 11951 BCLllA-10018 - GGCUCAGCUCUCAACUU 17 11952
BCLllA-10019 - CGGGCUCCUGGAGACU U 17 11953
BCLllA-10020 - GCUCGGGGCUUUUACU U 17 11954
BCLllA-10021 - GUCCCUGGCUCGGCCUU 17 11955
BCLllA-10022 + GGAAUCCAGCCUAAGUU 17 11956
BCLllA-10023 - GAGGUGAGACUGGCUU U 17 11957
BCLllA-10024 - UCCCACUCACCGUAAGAAAA 20 11958
BCLllA-10025 + CCACCUCUGGCCGGAACAAA 20 11959
BCLllA-10026 + GCGCGAGGAGCCGGCACAAA 20 11960
BCLllA-10027 - CUU UAUUUCUCUUU UCGAAA 20 11961
BCLllA-10028 - GGUGGGAGCUGGUGGGGAAA 20 11962
BCLllA-10029 - AGAAAGUGGCACUGUGGAAA 20 11963
BCLllA-10030 + GGAGGGCUGCGGGUCCGGAA 20 11964
BCLllA-10031 + AGAGAAAUAAAGCGGCGGAA 20 11965
BCLllA-10032 - GGGUGGGAGCUGGUGGGGAA 20 11966
BCLllA-10033 - GAGAAAGUGGCACUGUGGAA 20 11967
BCLllA-10034 + GGGGCCCGAGGGCGCCCCCA 20 11968
BCLllA-10035 + UCCCGUCCUUCCCGGUCCCA 20 11969
BCLllA-10036 + GCGCCCCCAAGGCCGAGCCA 20 11970
BCLllA-10037 + CUCCCCGCGUGUGGACGCCA 20 11971
BCLllA-9701 - CGCGUGUGUGGGGGGGAGCA 20 11972
BCLllA-10038 + GGGAGGUGGGAGGGAGCGCA 20 11973
BCLllA-10039 - U UUGGACACCAGCGCGCUCA 20 11974
BCLllA-10040 + GCCCGCGCGGCCUGGAAAGA 20 11975
BCLllA-10041 - GAGUCCGCGGAGUCGGGAGA 20 11976
BCLllA-10042 + CGGCGCAGGCCGGGGCCCGA 20 11977
BCLllA-10043 - CGGGAGAGGGGCCGCGGCGA 20 11978
BCLllA-10044 + UACAGCUCCGCAGCGGGCGA 20 11979
BCLllA-10045 - AGCCGUGGGACCGGGAAGGA 20 11980
BCLllA-10046 - GUGGGUGUGCGUACGGAGGA 20 11981
BCLllA-10047 + UGGAGGGCUGCGGGUCCGGA 20 11982
BCLllA-10048 + GCUGGGGAAGCGCGGGCGGA 20 11983
BCLllA-10049 - AGAAAAUGGGGGGGUAGGGA 20 11984
BCLllA-10050 - GGAGAGCCGUGGGACCGGGA 20 11985
BCLllA-10051 - GAGCGCGGCGGCGGCGGGGA 20 11986
BCLllA-10052 + GCGGGCGAGGGGAGGUGGGA 20 11987
BCLllA-10053 + GAAUCCAGCCUAAGU UUGGA 20 11988
BCLllA-10054 - CAAAAUAAUGAACAAUGCUA 20 11989
BCLllA-10055 - AGGGGAAGUGGGUGUGCGUA 20 11990
BCLllA-10056 - CGUAAGAAAAUGGGGGGGUA 20 11991
BCLllA-10057 + CCUACCCCCCCAUUUUCUUA 20 11992
BCLllA-10058 + UGUUCAUUAUUU UGCAAAAC 20 11993 BCLllA-10059 + AAAAUAGAGCGAGAGUGCAC 20 11994
BCLllA-10060 - GGGGAGAAAAGAGGUGAGAC 20 11995
BCLllA-10061 - GGGAGAGGGGCCGCGGCGAC 20 11996
BCLllA-10062 - GCCGUGGGACCGGGAAGGAC 20 11997
BCLllA-10063 + CCCAAGGCCGAGCCAGGGAC 20 11998
BCLllA-10064 + GCGGCCUGGAAAGAGGGGAC 20 11999
BCLllA-10065 - GACGGGGAGAGCCGUGGGAC 20 12000
BCLllA-10066 - GAACAACUCACAUGCAAACC 20 12001
BCLllA-10067 + AAAUAGAGCGAGAGUGCACC 20 12002
BCLllA-10068 + CCAAGGCCGAGCCAGGGACC 20 12003
BCLllA-10069 + CGGCCUGGAAAGAGGGGACC 20 12004
BCLllA-10070 - ACGGGGAGAGCCGUGGGACC 20 12005
BCLllA-10071 - UGUCCGGGAGCAACUCUACC 20 12006
BCLllA-10072 + CCCCACCAGCUCCCACCCCC 20 12007
BCLllA-10073 + CACCGGGAGGCUGCAGCCCC 20 12008
BCLllA-10074 - GGGGCU UUUACUUCGGCCCC 20 12009
BCLllA-10075 - GCACUGUGGAAAGGGGCCCC 20 12010
BCLllA-10076 + GUCUCACCUCUU UUCUCCCC 20 12011
BCLllA-10077 - CGCCCGCGCU UCCCCAGCCC 20 12012
BCLllA-10078 + GCACCGGGAGGCUGCAGCCC 20 12013
BCLllA-10079 - UUGGGGGCGCCCUCGGGCCC 20 12014
BCLllA-10080 - CUGCGCCGCCUGCCUCUCCC 20 12015
BCLllA-10081 + AGUCUCACCUCUUU UCUCCC 20 12016
BCLllA-10082 - AAGUCUAAAAAACGAUUCCC 20 12017
BCLllA-10083 + AGCGCGGGCGGAGGGAAGCC 20 12018
BCLllA-10084 - CCGCCCGCGCUUCCCCAGCC 20 12019
BCLllA-10085 + GGCGCCCCCAAGGCCGAGCC 20 12020
BCLllA-10086 + GCUCCCCGCGUGUGGACGCC 20 12021
BCLllA-10087 + UCCGCGGACUCAGGAGCGCC 20 12022
BCLllA-10088 + AGAGGCAGGCGGCGCAGGCC 20 12023
BCLllA-10089 + CUCCAGGAGCCCGCGCGGCC 20 12024
BCLllA-10090 - AGCCCGGGGCUGCAGCCUCC 20 12025
BCLllA-10091 - U UCCAGGCCGCGCGGGCUCC 20 12026
BCLllA-10092 + AAGCCAGGUAGAGUUGCUCC 20 12027
BCLllA-10093 + AGGGCAGCGCCCAAGUCUCC 20 12028
BCLllA-10094 - GCGUACGGAGGAGGGUGUCC 20 12029
BCLllA-10095 - CAAGUCUAAAAAACGAUUCC 20 12030
BCLllA-10096 + GCCGCGUCUCCCGUCCU UCC 20 12031
BCLllA-10097 - CUCCCCGGUCCCCUCUU UCC 20 12032
BCLllA-10098 + CCAAGUUACAGCUCCGCAGC 20 12033
BCLllA-10099 + GAGCCGGCA C A A A AG G C AG C 20 12034
BCLllA-10100 - CUCACGGUCAAGUGUGCAGC 20 12035 BCLllA-10101 + GGAGGGCAAGCGCGAGGAGC 20 12036
BCLllA-9563 - CCGCGUGUGUGGGGGGGAGC 20 12037
BCLllA-10102 - GCAAACCUGGGGGUGGGAGC 20 12038
BCLllA-10103 - GGCCCCUGGCGUCCACACGC 20 12039
BCLllA-10104 - AGUUUCCCGAGCGCAGCCGC 20 12040
BCLllA-10105 + GCCCCGGGCUGGGGAAGCGC 20 12041
BCLllA-10106 + CUCCGCGGACUCAGGAGCGC 20 12042
BCLllA-10107 - CCCCUCUUUCCAGGCCGCGC 20 12043
BCLllA-10108 + ACACUUGACCGUGAGCGCGC 20 12044
BCLllA-10109 + CGGGGAGAGGCAGGCGGCGC 20 12045
BCLllA-10110 + GAGAGGCAGGCGGCGCAGGC 20 12046
BCLllA-10111 + AGAGGGGACCGGGGAGAGGC 20 12047
BCLllA-10112 - GCAGCCCUCCAAACUUAGGC 20 12048
BCLllA-10113 - GGAAGGACGGGAGACGCGGC 20 12049
BCLllA-10114 - GGAGCGAGCGCGGCGGCGGC 20 12050
BCLllA-10115 + GGGAGGCUGCAGCCCCGGGC 20 12051
BCLllA-10116 + U UUUGCAAAACUGGCGGGGC 20 12052
BCLllA-10117 + CAUUAUUUUGCAAAACUGGC 20 12053
BCLllA-10118 + GACAAACACCCACCUCUGGC 20 12054
BCLllA-10119 + GCCUAAGUUUGGAGGGCUGC 20 12055
BCLllA-10120 + GGAACAAAAGGCGGCAGUGC 20 12056
BCLllA-10121 - UGUCCCGCUGCCU UUUGUGC 20 12057
BCLllA-10122 + UCUCCCGACUCCGCGGACUC 20 12058
BCLllA-10123 + GCGGGACAAACACCCACCUC 20 12059
BCLllA-10124 - UCGGCCUUGGGGGCGCCCUC 20 12060
BCLllA-10125 - UUCUUUGCUGUCCUCUCCUC 20 12061
BCLllA-10126 + CCGAGCCCGCGGCUGCGCUC 20 12062
BCLllA-10127 - CCGAGCGCAGCCGCGGGCUC 20 12063
BCLllA-10128 - GCUCCUGAGUCCGCGGAGUC 20 12064
BCLllA-10129 + AGUUUGGAGGGCUGCGGGUC 20 12065
BCLllA-10130 - UGCGUACGGAGGAGGGUGUC 20 12066
BCLllA-10131 - GAGGCUCAGCUCUCAACUUC 20 12067
BCLllA-10132 - AGACUUGGGCGCUGCCCUUC 20 12068
BCLllA-10133 - GGCACUGCCGCCUU UUGUUC 20 12069
BCLllA-10134 - ACGAUUCCCGGGGAGAAAAG 20 12070
BCLllA-10135 - UCCCCACAAUAGUGAGAAAG 20 12071
BCLllA-10136 + AGCGGCGGAAAGGAGGAAAG 20 12072
BCLllA-10137 + AGCCCGCGCGGCCUGGAAAG 20 12073
BCLllA-10138 - GAAAGUGGCACUGUGGAAAG 20 12074
BCLllA-10139 + U U U CG AAAAG AG AAAU AAAG 20 12075
BCLllA-10140 - GCGGCGGCGGGGAGGGGAAG 20 12076
BCLllA-10141 + UCCCCGCGUGUGGACGCCAG 20 12077 BCLllA-10142 - CCGCCUUU UGUUCCGGCCAG 20 12078
BCLllA-10143 + UCCAAGUUACAGCUCCGCAG 20 12079
BCLllA-10144 + GGAGCCGGCA C A A A AG G C AG 20 12080
BCLllA-10145 - GCUCACGGUCAAGUGUGCAG 20 12081
BCLllA-10146 + CCCGCGCGGCCUGGAAAGAG 20 12082
BCLllA-10147 - AGUCCGCGGAGUCGGGAGAG 20 12083
BCLllA-10148 + ACAGCUCCGCAGCGGGCGAG 20 12084
BCLllA-10149 + GGGAAACUUUGCCCGAGGAG 20 12085
BCLllA-10150 - UGAGUCCGCGGAGUCGGGAG 20 12086
BCLllA-10151 + GGAAAGAGGGGACCGGGGAG 20 12087
BCLllA-10152 - AGCGCGGCGGCGGCGGGGAG 20 12088
BCLllA-10153 + CUGGCGGGGCGGGGGGGGAG 20 12089
BCLllA-10154 + CCCCAUU UUCUUACGGUGAG 20 12090
BCLllA-10155 + GGAGGGAGCGCACGGCAACG 20 12091
BCLllA-9741 + CCUGCUCCCCCCCACACACG 20 12092
BCLllA-10156 - CGGCCCCUGGCGUCCACACG 20 12093
BCLllA-10157 - ACCGGGAAGGACGGGAGACG 20 12094
BCLllA-10158 - GGAGAGGGGCCGCGGCGACG 20 12095
BCLllA-10159 + GGCCUGGAAAGAGGGGACCG 20 12096
BCLllA-10160 - GCCCGCGCUUCCCCAGCCCG 20 12097
BCLllA-10161 + AAGUAAAAGCCCCGAGCCCG 20 12098
BCLllA-10162 + GCGGCGCAGGCCGGGGCCCG 20 12099
BCLllA-10163 + CGCUCGGGAAACUUUGCCCG 20 12100
BCLllA-10164 - AGUCUAAAAAACGAUUCCCG 20 12101
BCLllA-10165 - AAGUUUCCCGAGCGCAGCCG 20 12102
BCLllA-10166 - CGCGGCGACGGGGAGAGCCG 20 12103
BCLllA-10167 + CCGCGGACUCAGGAGCGCCG 20 12104
BCLllA-10168 + CACGGCUCUCCCCGUCGCCG 20 12105
BCLllA-10169 + GAGGCAGGCGGCGCAGGCCG 20 12106
BCLllA-10170 - CGGAGUCGGGAGAGGGGCCG 20 12107
BCLllA-10171 + CGGCCCCUCUCCCGACUCCG 20 12108
BCLllA-10172 - CCCCGGCGCUCCUGAGUCCG 20 12109
BCLllA-10173 + AGCCCCGGGCUGGGGAAGCG 20 12110
BCLllA-10174 - CCACACGCGGGGAGCGAGCG 20 12111
BCLllA-10175 - GCCCCUGGCGUCCACACGCG 20 12112
BCLllA-10176 + CAAGUCUCCAGGAGCCCGCG 20 12113
BCLllA-10177 - UCCCCUCUU UCCAGGCCGCG 20 12114
BCLllA-10178 + GGCGCGGGAGGGCAAGCGCG 20 12115
BCLllA-10179 - GAGCGAGCGCGGCGGCGGCG 20 12116
BCLllA-10180 + U UACAGCUCCGCAGCGGGCG 20 12117
BCLllA-10181 + UUUGCAAAACUGGCGGGGCG 20 12118
BCLllA-10182 + AUUAUUUUGCAAAACUGGCG 20 12119 BCLllA-10183 - CGAGCGCAGCCGCGGGCUCG 20 12120
BCLllA-10184 + CCUCUGGCCGGAACAAAAGG 20 12121
BCLllA-10185 + G AAA U A A AG CG G CG G A A AG G 20 12122
BCLllA-10186 + GGGGACCGGGGAGAGGCAGG 20 12123
BCLllA-10187 + GGCGGAAAGGAGGAAAGAGG 20 12124
BCLllA-10188 - CCUUUUGUUCCGGCCAGAGG 20 12125
BCLllA-10189 - AGUGGGUGUGCGUACGGAGG 20 12126
BCLllA-10190 + CCGCAGCGGGCGAGGGGAGG 20 12127
BCLllA-10191 - GGAAGUGGGUGUGCGUACGG 20 12128
BCLllA-10192 + CGCGGACUCAGGAGCGCCGG 20 12129
BCLllA-10193 + CGAAAAGAGAAAUAAAGCGG 20 12130
BCLllA-10194 - CACGCGGGGAGCGAGCGCGG 20 12131
BCLllA-10195 - GCGGGGAGCGAGCGCGGCGG 20 12132
BCLllA-10196 - GGGAGCGAGCGCGGCGGCGG 20 12133
BCLllA-10197 + GGCUGGGGAAGCGCGGGCGG 20 12134
BCLllA-10198 + U UGCAAAACUGGCGGGGCGG 20 12135
BCLllA-10199 - GGGAGCUGGUGGGGAAAGGG 20 12136
BCLllA-10200 - AAGAAAAUGGGGGGGUAGGG 20 12137
BCLllA-10201 + UAGAGCGAGAGUGCACCGGG 20 12138
BCLllA-10202 - ACGGUCAAGUGUGCAGCGGG 20 12139
BCLllA-10203 + CCGGGCUGGGGAAGCGCGGG 20 12140
BCLllA-10204 + UGCAAAACUGGCGGGGCGGG 20 12141
BCLllA-10205 + GCUCCGCAGCGGGCGAGGGG 20 12142
BCLllA-10206 - CGAGCGCGGCGGCGGCGGGG 20 12143
BCLllA-10207 + GCAAAACUGGCGGGGCGGGG 20 12144
BCLllA-10208 + AUUUUGCAAAACUGGCGGGG 20 12145
BCLllA-10209 + CAAAACUGGCGGGGCGGGGG 20 12146
BCLllA-10210 - CUCACAUGCAAACCUGGGGG 20 12147
BCLllA-10211 - CUCACCGUAAGAAAAUGGGG 20 12148
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 12149
BCLllA-10212 - ACUCACCGUAAGAAAAUGGG 20 12150
BCLllA-10213 + AGCGGGCGAGGGGAGGUGGG 20 12151
BCLllA-9769 - U UAGAGUCCGCGUGUGUGGG 20 12152
BCLllA-10214 - CACUCACCGUAAGAAAAUGG 20 12153
BCLllA-10215 + UCAUUAUUUUGCAAAACUGG 20 12154
BCLllA-10216 - CAACUCACAUGCAAACCUGG 20 12155
BCLllA-10217 - AACCUGGGGGUGGGAGCUGG 20 12156
BCLllA-9578 - U UUAGAGUCCGCGUGUGUGG 20 12157
BCLllA-10218 - GCUGCGGAGCUGUAACU UGG 20 12158
BCLllA-10219 - GGUCCCUGGCUCGGCCU UGG 20 12159
BCLllA-10220 + GGAAUCCAGCCUAAGU UUGG 20 12160
BCLllA-10221 - CCACUCACCGUAAGAAAAUG 20 12161 BCLllA-10222 - AUAGUGAGAAAGUGGCACUG 20 12162
BCLllA-10223 - ACAACUCACAUGCAAACCUG 20 12163
BCLllA-10224 - CCACCUCCCCUCGCCCGCUG 20 12164
BCLllA-10225 + AGCCUAAGUUUGGAGGGCUG 20 12165
BCLllA-10226 + GAGGCUGCAGCCCCGGGCUG 20 12166
BCLllA-10227 + CCGCGCUCGCUCCCCGCGUG 20 12167
BCLllA-10228 - CCUGGGGGUGGGAGCUGGUG 20 12168
BCLllA-9581 - CAU UUUAGAGUCCGCGUGUG 20 12169
BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 12170
BCLllA-10229 + GCCACU UUCUCACUAUUGUG 20 12171
BCLllA-10230 + GUGCCACU UUCUCACUAUUG 20 12172
BCLllA-10231 - CGGUCCCUGGCUCGGCCUUG 20 12173
BCLllA-10232 - CCCACUCACCGUAAGAAAAU 20 12174
BCLllA-10233 - CCCGCUGCGGAGCUGUAACU 20 12175
BCLllA-10234 - CGCGCGGGCUCCUGGAGACU 20 12176
BCLllA-10235 - AACAACUCACAUGCAAACCU 20 12177
BCLllA-10236 - CUCGGCCUUGGGGGCGCCCU 20 12178
BCLllA-10237 - CCCGGUCCCUGGCUCGGCCU 20 12179
BCLllA-10238 - U UUCUUUGCUGUCCUCUCCU 20 12180
BCLllA-10239 + CCCGAGCCCGCGGCUGCGCU 20 12181
BCLllA-10240 + GGAGGCUGCAGCCCCGGGCU 20 12182
BCLllA-10241 - CCCGAGCGCAGCCGCGGGCU 20 12183
BCLllA-10242 - CGGCGGCGGGGAGGGGAAGU 20 12184
BCLllA-10243 - CGCUCCUGAGUCCGCGGAGU 20 12185
BCLllA-10244 + CCCAUU UUCUUACGGUGAGU 20 12186
BCLllA-10245 - GCGGCGACGGGGAGAGCCGU 20 12187
BCLllA-10246 - CUU UUGUUCCGGCCAGAGGU 20 12188
BCLllA-10247 + CGCAGCGGGCGAGGGGAGGU 20 12189
BCLllA-10248 - CCGUAAGAAAAUGGGGGGGU 20 12190
BCLllA-10249 - UCACAUGCAAACCUGGGGGU 20 12191
BCLllA-10250 - ACCUGGGGGUGGGAGCUGGU 20 12192
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 12193
BCLllA-10251 + UGCCACUUUCUCACUAU UGU 20 12194
BCLllA-10252 - ACCCGCAGCCCUCCAAACUU 20 12195
BCLllA-10253 - GGAGGCUCAGCUCUCAACUU 20 12196
BCLllA-10254 - GCGCGGGCUCCUGGAGACUU 20 12197
BCLllA-10255 - CGGGCUCGGGGCU UUUACUU 20 12198
BCLllA-10256 - CCGGUCCCUGGCUCGGCCUU 20 12199
BCLllA-10257 + CGCGGAAUCCAGCCUAAGUU 20 12200
BCLllA-10258 - AAAGAGGUGAGACUGGCUUU 20 12201 Table 19A provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of
orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1 A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 19A
Figure imgf000423_0001
BCLllA-5352 + AUUCCCGU UUGCUUAAGUGC 20 12226
BCLllA-6267 + AAUUCCCGUUUGCUUAAGUGC 21 12227
BCLllA-6268 + GAAUUCCCGUUUGCUUAAGUGC 22 12228
BCLllA-6269 + AGAAUUCCCGUU UGCUUAAGUGC 23 12229
BCLllA-6270 + GAGAAUUCCCGUUUGCUUAAGUGC 24 12230
BCLllA-10273 + CCUGCGAACUUGAACGUC 18 12231
BCLllA-10274 + CCCUGCGAACUUGAACGUC 19 12232
BCLllA-9570 + UCCCUGCGAACUUGAACGUC 20 12233
BCLllA-10275 + GUCCCUGCGAACUUGAACGUC 21 12234
BCLllA-10276 + CGUCCCUGCGAACU UGAACGUC 22 12235
BCLllA-10277 + ACGUCCCUGCGAACUUGAACGUC 23 12236
BCLllA-10278 + GACGUCCCUGCGAACU UGAACGUC 24 12237
BCLllA-10279 + UACAAAGAUGGCGCAGGGAAG 21 12238
BCLllA-10280 + AUACAAAGAUGGCGCAGGGAAG 22 12239
BCLllA-10281 + AAUACAAAGAUGGCGCAGGGAAG 23 12240
BCLllA-10282 + UAAUACAAAGAUGGCGCAGGGAAG 24 12241
BCLllA-10283 + CGGU UCACAUCGGGAGAG 18 12242
BCLllA-10284 + UCGGUUCACAUCGGGAGAG 19 12243
BCLllA-10285 + CUCGGU UCACAUCGGGAGAG 20 12244
BCLllA-10286 + GCUCGGUUCACAUCGGGAGAG 21 12245
BCLllA-10287 + GGCUCGGU UCACAUCGGGAGAG 22 12246
BCLllA-10288 + CGGCUCGGU UCACAUCGGGAGAG 23 12247
BCLllA-10289 + ACGGCUCGGUUCACAUCGGGAGAG 24 12248
BCLllA-10290 + AAUGGUUCCAGAUGGGAU 18 12249
BCLllA-10291 + CAAUGGUUCCAGAUGGGAU 19 12250
BCLllA-10292 + GCAAUGGUUCCAGAUGGGAU 20 12251
BCLllA-10293 + GGCAAUGGUUCCAGAUGGGAU 21 12252
BCLllA-10294 + CGGCAAUGGUUCCAGAUGGGAU 22 12253
BCLllA-10295 + ACGGCAAUGGUUCCAGAUGGGAU 23 12254
BCLllA-10296 + CACGGCAAUGGUUCCAGAUGGGAU 24 12255
BCLllA-10297 + AACUUGAACGUCAGGAGU 18 12256
BCLllA-10298 + GAACUUGAACGUCAGGAGU 19 12257
BCLllA-10299 + CGAACUUGAACG U CAGG AG U 20 12258
BCLllA-10300 + GCGAACUUGAACGUCAGGAGU 21 12259
BCLllA-10301 + UGCGAACUUGAACGUCAGGAGU 22 12260
BCLllA-10302 + CUGCGAACUUGAACGUCAGGAGU 23 12261
BCLllA-10303 + CCUGCGAACUUGAACGUCAGGAGU 24 12262
BCLllA-6304 - AACCCCAGCACUUAAGCAAAC 21 12263
BCLllA-6305 - AAACCCCAGCACUUAAGCAAAC 22 12264
BCLllA-6306 - CAAACCCCAGCACUUAAGCAAAC 23 12265
BCLllA-6307 - G CAA ACCCCAG CAC U UAAG CAAAC 24 12266
BCLllA-10304 - AAGCAAAAGCGAGGGGGAGAG 21 12267 BCLllA-10305 - GAAGCAAAAGCGAGGGGGAGAG 22 12268
BCLllA-10306 - AGAAGCAAAAGCGAGGGGGAGAG 23 12269
BCLllA-10307 - UAGAAGCAAAAGCGAGGGGGAGAG 24 12270
Table 19B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1A gene.
Table 19B
Figure imgf000425_0001
BCLllA-10326 + AAAGAUGGCGCAGGGAAG 18 12291
BCLllA-10327 + CAAAGAUGGCGCAGGGAAG 19 12292
BCLllA-10328 + ACAAAGAUGGCGCAGGGAAG 20 12293
BCLllA-6350 - CCCAGCACUUAAGCAAAC 18 12294
BCLllA-6351 - CCCCAGCACUUAAGCAAAC 19 12295
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 12296
BCLllA-10329 - UUCACGAGAAAAACCUCC 18 12297
BCLllA-10330 - U U U CACG AG AAAAACCU CC 19 12298
BCLllA-10331 - UUUUCACGAGAAAAACCUCC 20 12299
BCLllA-10332 - UUUUUCACGAGAAAAACCUCC 21 12300
BCLllA-10333 - AUUUUUCACGAGAAAAACCUCC 22 12301
BCLllA-10334 - AAU U U U U CACG AG AAAAACCU CC 23 12302
BCLllA-10335 - AAAU U U U U CACG AG AAAAACCU CC 24 12303
BCLllA-10336 - UGAUGAAGAUAUUUUCUC 18 12304
BCLllA-10337 - CUGAUGAAGAUAUUUUCUC 19 12305
BCLllA-9731 - ACUGAUGAAGAUAUUUUCUC 20 12306
BCLllA-10338 - CACUGAUGAAGAUAUUUUCUC 21 12307
BCLllA-10339 - GCACUGAUGAAGAUAUUUUCUC 22 12308
BCLllA-10340 - GGCACUGAUGAAGAUAUUUUCUC 23 12309
BCLllA-10341 - AGGCACUGAUGAAGAUAUUUUCUC 24 12310
BCLllA-10342 - CAAAAGCGAGGGGGAGAG 18 12311
BCLllA-10343 - GCAAAAGCGAGGGGGAGAG 19 12312
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 12313
BCLllA-10344 - UAUUAUUUCUAAUUUAUU 18 12314
BCLllA-10345 - GUAUUAUUUCUAAUU UAUU 19 12315
BCLllA-10346 - UGUAUUAUUUCUAAU UUAUU 20 12316
BCLllA-10347 - U UGUAUUAUUUCUAAU UUAUU 21 12317
BCLllA-10348 - U UUGUAUUAUUUCUAAUUUAUU 22 12318
BCLllA-10349 - CUUUGUAUUAUUUCUAAUUUAUU 23 12319
BCLllA-10350 - UCUUUGUAUUAUUUCUAAUUUAUU 24 12320
BCLllA-10351 - UUGAAUAAUCUUUCAUUU 18 12321
BCLllA-10352 - UUUGAAUAAUCUUUCAUUU 19 12322
BCLllA-10353 - U UUUGAAUAAUCUUUCAUUU 20 12323
BCLllA-10354 - U UUUUGAAUAAUCUUUCAUUU 21 12324
BCLllA-10355 - U UUUUUGAAUAAUCUU UCAUUU 22 12325
BCLllA-10356 - CUU UUUUGAAUAAUCU UUCAUUU 23 12326
BCLllA-10357 - UCU UUUUUGAAUAAUCUUUCAUUU 24 12327
Table 19C provides exemplary targeting domains for knocking down the BCLllA gene selected according to the third tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used
Table 19C
Figure imgf000427_0001
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 12358
BCLllA-10386 + GGCAGGGCGAGCAGGAGAGAA 21 12359
BCLllA-10387 + GGGCAGGGCGAGCAGGAGAGAA 22 12360
BCLllA-10388 + UGGGCAGGGCGAGCAGGAGAGAA 23 12361
BCLllA-10389 + AUGGGCAGGGCGAGCAGGAGAGAA 24 12362
BCLllA-10390 + GAGAAGGGGAGGAGGGAA 18 12363
BCLllA-10391 + AGAGAAGGGGAGGAGGGAA 19 12364
BCLllA-4404 + GAGAGAAGGGGAGGAGGGAA 20 12365
BCLllA-10392 + GGAGAGAAGGGGAGGAGGGAA 21 12366
BCLllA-10393 + AGGAGAGAAGGGGAGGAGGGAA 22 12367
BCLllA-10394 + CAGGAGAGAAGGGGAGGAGGGAA 23 12368
BCLllA-10395 + GCAGGAGAGAAGGGGAGGAGGGAA 24 12369
BCLllA-10396 + ACGACGGCUCGGUUCACA 18 12370
BCLllA-10397 + GACGACGGCUCGGUUCACA 19 12371
BCLllA-10398 + GGACGACGGCUCGGUUCACA 20 12372
BCLllA-10399 + CGGACGACGGCUCGGUUCACA 21 12373
BCLllA-10400 + GCGGACGACGGCUCGGUUCACA 22 12374
BCLllA-10401 + GGCGGACGACGGCUCGGUUCACA 23 12375
BCLllA-10402 + GGGCGGACGACGGCUCGGUUCACA 24 12376
BCLllA-10403 + AAGGGGAAGCUCACACCA 18 12377
BCLllA-10404 + GAAGGGGAAGCUCACACCA 19 12378
BCLllA-10405 + GGAAGGGGAAGCUCACACCA 20 12379
BCLllA-10406 + GGGAAGGGGAAGCUCACACCA 21 12380
BCLllA-10407 + AGGGAAGGGGAAGCUCACACCA 22 12381
BCLllA-10408 + GAGGGAAGGGGAAGCUCACACCA 23 12382
BCLllA-10409 + GGAGGGAAGGGGAAGCUCACACCA 24 12383
BCLllA-10410 + AGAAAGAAGGAGACUCCA 18 12384
BCLllA-10411 + UAGAAAGAAGGAGACUCCA 19 12385
BCLllA-10412 + U UAGAAAGAAGGAGACUCCA 20 12386
BCLllA-10413 + G U U AG AAAG AAGG AG ACU CCA 21 12387
BCLllA-10414 + GGUUAGAAAGAAGGAGACUCCA 22 12388
BCLllA-10415 + GGGUUAGAAAGAAGGAGACUCCA 23 12389
BCLllA-10416 + CGGGUUAGAAAGAAGGAGACUCCA 24 12390
BCLllA-10417 + GGCUCACCAGUGGCCGCA 18 12391
BCLllA-10418 + GGGCUCACCAGUGGCCGCA 19 12392
BCLllA-10419 + CGGGCUCACCAGUGGCCGCA 20 12393
BCLllA-10420 + GCGGGCUCACCAGUGGCCGCA 21 12394
BCLllA-10421 + CGCGGGCUCACCAGUGGCCGCA 22 12395
BCLllA-10422 + CCGCGGGCUCACCAGUGGCCGCA 23 12396
BCLllA-10423 + GCCGCGGGCUCACCAGUGGCCGCA 24 12397
BCLllA-10424 + UAAUACAAAGAUGGCGCA 18 12398
BCLllA-10425 + AUAAUACAAAGAUGGCGCA 19 12399 BCLllA-9702 + AAUAAUACAAAGAUGGCGCA 20 12400
BCLllA-10426 + A A A U A A U AC A A AG A U G G CG C A 21 12401
BCLllA-10427 + GAAAUAAUACAAAGAUGGCGCA 22 12402
BCLllA-10428 + AG AAA U A A U AC A A AG A U G G CG C A 23 12403
BCLllA-10429 + UAGAAAUAAUACAAAGAUGGCGCA 24 12404
BCLllA-10430 + AAAAAAAAAAAAAAAAGA 18 12405
BCLllA-10431 + AAAAAAAAAAAAAAAAAGA 19 12406
BCLllA-4527 + A A A A A A A A A A A A AAA A AAG A 20 12407
BCLllA-10432 + AAAAAAAAAAAAAAAAAAAGA 21 12408
BCLllA-10433 + A A A A A A A A A A A A A A A A AAA AG A 22 12409
BCLllA-10434 + A A A A A A A A A A A A A A A A AAA A AG A 23 12410
BCLllA-10435 + AAAAAAAAAAAAAAAAAAAAAAGA 24 12411
BCLllA-10436 + AGAGCCGGGUUAGAAAGA 18 12412
BCLllA-10437 + GAGAGCCGGGUUAGAAAGA 19 12413
BCLllA-9708 + GGAGAGCCGGGUUAGAAAGA 20 12414
BCLllA-10438 + GGGAGAGCCGGGUUAGAAAGA 21 12415
BCLllA-10439 + CGGGAGAGCCGGGUUAGAAAGA 22 12416
BCLllA-10440 + U CGGG AG AG CCGGGU U AG AAAG A 23 12417
BCLllA-10441 + AUCGGGAGAGCCGGGU UAGAAAGA 24 12418
BCLllA-10442 + CGUGGCCGGGAGAGAAGA 18 12419
BCLllA-10443 + GCGUGGCCGGGAGAGAAGA 19 12420
BCLllA-10444 + GGCGUGGCCGGGAGAGAAGA 20 12421
BCLllA-10445 + UGGCGUGGCCGGGAGAGAAGA 21 12422
BCLllA-10446 + GUGGCGUGGCCGGGAGAGAAGA 22 12423
BCLllA-10447 + GGUGGCGUGGCCGGGAGAGAAGA 23 12424
BCLllA-10448 + CGGUGGCGUGGCCGGGAGAGAAGA 24 12425
BCLllA-10449 + AGAGAGAGAGAAGAGAGA 18 12426
BCLllA-10450 + GAGAGAGAGAGAAGAGAGA 19 12427
BCLllA-4845 + GGAGAGAGAGAGAAGAGAGA 20 12428
BCLllA-10451 + GGGAGAGAGAGAGAAGAGAGA 21 12429
BCLllA-10452 + AGGGAGAGAGAGAGAAGAGAGA 22 12430
BCLllA-10453 + GAGGGAGAGAGAGAGAAGAGAGA 23 12431
BCLllA-10454 + AGAGGGAGAGAGAGAGAAGAGAGA 24 12432
BCLllA-10455 + UAGAGGGAGAGAGAGAGA 18 12433
BCLllA-10456 + AUAGAGGGAGAGAGAGAGA 19 12434
BCLllA-10457 + GAUAGAGGGAGAGAGAGAGA 20 12435
BCLllA-10458 + AGAUAGAGGGAGAGAGAGAGA 21 12436
BCLllA-10459 + GAGAUAGAGGGAGAGAGAGAGA 22 12437
BCLllA-10460 + AGAGAUAGAGGGAGAGAGAGAGA 23 12438
BCLllA-10461 + GAGAGAUAGAGGGAGAGAGAGAGA 24 12439
BCLllA-10462 + GAUAGAGGGAGAGAGAGA 18 12440
BCLllA-10463 + AGAUAGAGGGAGAGAGAGA 19 12441 BCLllA-10464 + GAGAUAGAGGGAGAGAGAGA 20 12442
BCLllA-10465 + AGAGAUAGAGGGAGAGAGAGA 21 12443
BCLllA-10466 + GAGAGAUAGAGGGAGAGAGAGA 22 12444
BCLllA-10467 + AGAGAGAUAGAGGGAGAGAGAGA 23 12445
BCLllA-10468 + AAGAGAGAUAGAGGGAGAGAGAGA 24 12446
BCLllA-10469 + AAAAAAGAGGGAGAGAGA 18 12447
BCLllA-10470 + AAAAAAAGAGGGAGAGAGA 19 12448
BCLllA-4911 + AAAAAAAAGAGGGAGAGAGA 20 12449
BCLllA-10471 + A A A A A A A A AG AGGGAGAGAGA 21 12450
BCLllA-10472 + AAAAAAAAAAGAGGGAGAGAGA 22 12451
BCLllA-10473 + AAAAAAAAAAAGAGGGAGAGAGA 23 12452
BCLllA-10474 + A A A A A A AAA A AAG AGGGAGAGAGA 24 12453
BCLllA-10475 + GAGAUAGAGGGAGAGAGA 18 12454
BCLllA-10476 + AGAGAUAGAGGGAGAGAGA 19 12455
BCLllA-10477 + GAGAGAUAGAGGGAGAGAGA 20 12456
BCLllA-10478 + AGAGAGAUAGAGGGAGAGAGA 21 12457
BCLllA-10479 + AAGAGAGAUAGAGGGAGAGAGA 22 12458
BCLllA-10480 + GAAGAGAGAUAGAGGGAGAGAGA 23 12459
BCLllA-10481 + AGAAGAGAGAUAGAGGGAGAGAGA 24 12460
BCLllA-10482 + CAGGGCGAGCAGGAGAGA 18 12461
BCLllA-10483 + GCAGGGCGAGCAGGAGAGA 19 12462
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 12463
BCLllA-10484 + GGGCAGGGCGAGCAGGAGAGA 21 12464
BCLllA-10485 + UGGGCAGGGCGAGCAGGAGAGA 22 12465
BCLllA-10486 + AUGGGCAGGGCGAGCAGGAGAGA 23 12466
BCLllA-10487 + CAUGGGCAGGGCGAGCAGGAGAGA 24 12467
BCLllA-10488 + AAAAAAAAGAGGGAGAGA 18 12468
BCLllA-10489 + A A A A A A A A AG AGGGAGAGA 19 12469
BCLllA-4909 + AAAAAAAAAAGAGGGAGAGA 20 12470
BCLllA-10490 + A A A A A A A A A A AG AG G G AG AG A 21 12471
BCLllA-10491 + A A A A A A A A A A AAG AGGGAGAGA 22 12472
BCLllA-10492 + A A A A A A A A A AAA AG AGGGAGAGA 23 12473
BCLllA-10493 + AAAAAAAAAAAAAAGAGGGAGAGA 24 12474
BCLllA-10494 + GAGAGAUAGAGGGAGAGA 18 12475
BCLllA-10495 + AGAGAGAUAGAGGGAGAGA 19 12476
BCLllA-10496 + AAGAGAGAUAGAGGGAGAGA 20 12477
BCLllA-10497 + GAAGAGAGAUAGAGGGAGAGA 21 12478
BCLllA-10498 + AGAAGAGAGAUAGAGGGAGAGA 22 12479
BCLllA-10499 + GAGAAGAGAGAUAGAGGGAGAGA 23 12480
BCLllA-10500 + AGAGAAGAGAGAUAGAGGGAGAGA 24 12481
BCLllA-10501 + AAAAAAAAAAGAGGGAGA 18 12482
BCLllA-10502 + AAAAAAAAAAAGAGGGAGA 19 12483 BCLllA-4907 + AAAAAAAAAAAAGAGGGAGA 20 12484
BCLllA-10503 + A A A A A A A A A AAA AG AG G G AG A 21 12485
BCLllA-10504 + AAAAAAAAAAAAAAGAGGGAGA 22 12486
BCLllA-10505 + A A A A A A A A A A AAA A AG AG G G AG A 23 12487
BCLllA-10506 + AAAAAAAAAAAAAAAAGAGGGAGA 24 12488
BCLllA-10507 + AAGAGAGAUAGAGGGAGA 18 12489
BCLllA-10508 + GAAGAGAGAUAGAGGGAGA 19 12490
BCLllA-10509 + AGAAGAGAGAUAGAGGGAGA 20 12491
BCLllA-10510 + GAGAAGAGAGAUAGAGGGAGA 21 12492
BCLllA-10511 + AGAGAAGAGAGAUAGAGGGAGA 22 12493
BCLllA-10512 + GAGAGAAGAGAGAUAGAGGGAGA 23 12494
BCLllA-10513 + AGAGAGAAGAGAGAUAGAGGGAGA 24 12495
BCLllA-10514 + AGAGAGAAGAGAGAUAGA 18 12496
BCLllA-10515 + GAGAGAGAAGAGAGAUAGA 19 12497
BCLllA-9709 + AGAGAGAGAAGAGAGAUAGA 20 12498
BCLllA-10516 + GAGAGAGAGAAGAGAGAUAGA 21 12499
BCLllA-10517 + AGAGAGAGAGAAGAGAGAUAGA 22 12500
BCLllA-10518 + GAGAGAGAGAGAAGAGAGAUAGA 23 12501
BCLllA-10519 + GGAGAGAGAGAGAAGAGAGAUAGA 24 12502
BCLllA-10520 + CGGGAGAGCCGGGUUAGA 18 12503
BCLllA-10521 + UCGGGAGAGCCGGGUUAGA 19 12504
BCLllA-10522 + AUCGGGAGAGCCGGGUUAGA 20 12505
BCLllA-10523 + CAUCGGGAGAGCCGGGUUAGA 21 12506
BCLllA-10524 + ACAUCGGGAGAGCCGGGUUAGA 22 12507
BCLllA-10525 + CACAUCGGGAGAGCCGGGUUAGA 23 12508
BCLllA-10526 + UCACAUCGGGAGAGCCGGGUUAGA 24 12509
BCLllA-10527 + GGGGGAGGGGCGGGCCGA 18 12510
BCLllA-10528 + CGGGGGAGGGGCGGGCCGA 19 12511
BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 12512
BCLllA-10529 + CCCGGGGGAGGGGCGGGCCGA 21 12513
BCLllA-10530 + CCCCGGGGGAGGGGCGGGCCGA 22 12514
BCLllA-10531 + CCCCCGGGGGAGGGGCGGGCCGA 23 12515
BCLllA-10532 + GCCCCCGGGGGAGGGGCGGGCCGA 24 12516
BCLllA-10533 + UGGGCAGGGCGAGCAGGA 18 12517
BCLllA-10534 + AUGGGCAGGGCGAGCAGGA 19 12518
BCLllA-10535 + CAUGGGCAGGGCGAGCAGGA 20 12519
BCLllA-10536 + ACAUGGGCAGGGCGAGCAGGA 21 12520
BCLllA-10537 + AACAUGGGCAGGGCGAGCAGGA 22 12521
BCLllA-10538 + AAACAUGGGCAGGGCGAGCAGGA 23 12522
BCLllA-10539 + AAAACAUGGGCAGGGCGAGCAGGA 24 12523
BCLllA-10540 + CAGGAGAGAAGGGGAGGA 18 12524
BCLllA-10541 + GCAGGAGAGAAGGGGAGGA 19 12525 BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 12526
BCLllA-10542 + GAGCAGGAGAGAAGGGGAGGA 21 12527
BCLllA-10543 + CGAGCAGGAGAGAAGGGGAGGA 22 12528
BCLllA-10544 + GCGAGCAGGAGAGAAGGGGAGGA 23 12529
BCLllA-10545 + GGCGAGCAGGAGAGAAGGGGAGGA 24 12530
BCLllA-10546 + A A A A A A A A A A A AG AG G G A 18 12531
BCLllA-10547 + AAAAAAAAAAAAAGAGGGA 19 12532
BCLllA-4905 + A A A A A A A A A A AAA AG AG G G A 20 12533
BCLllA-10548 + AAAAAAAAAAAAAAAGAGGGA 21 12534
BCLllA-10549 + A A A A A A A A A A AAA A A AG AG G G A 22 12535
BCLllA-10550 + AAAAAAAAAAAAAAAAAGAGGGA 23 12536
BCLllA-10551 + A A A A A A A A A A AAA A A A A AG AG G G A 24 12537
BCLllA-10552 + AGAAGAGAGAUAGAGGGA 18 12538
BCLllA-10553 + GAGAAGAGAGAUAGAGGGA 19 12539
BCLllA-10554 + AGAGAAGAGAGAUAGAGGGA 20 12540
BCLllA-10555 + GAGAGAAGAGAGAUAGAGGGA 21 12541
BCLllA-10556 + AGAGAGAAGAGAGAUAGAGGGA 22 12542
BCLllA-10557 + GAGAGAGAAGAGAGAUAGAGGGA 23 12543
BCLllA-10558 + AGAGAGAGAAGAGAGAUAGAGGGA 24 12544
BCLllA-10559 + AGAGAAGGGGAGGAGGGA 18 12545
BCLllA-10560 + GAGAGAAGGGGAGGAGGGA 19 12546
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 12547
BCLllA-10561 + AGGAGAGAAGGGGAGGAGGGA 21 12548
BCLllA-10562 + CAGGAGAGAAGGGGAGGAGGGA 22 12549
BCLllA-10563 + GCAGGAGAGAAGGGGAGGAGGGA 23 12550
BCLllA-10564 + AGCAGGAGAGAAGGGGAGGAGGGA 24 12551
BCLllA-10565 + GCGGUGGCGUGGCCGGGA 18 12552
BCLllA-10566 + GGCGGUGGCGUGGCCGGGA 19 12553
BCLllA-10567 + CGGCGGUGGCGUGGCCGGGA 20 12554
BCLllA-10568 + GCGGCGGUGGCGUGGCCGGGA 21 12555
BCLllA-10569 + CGCGGCGGUGGCGUGGCCGGGA 22 12556
BCLllA-10570 + CCGCGGCGGUGGCGUGGCCGGGA 23 12557
BCLllA-10571 + GCCGCGGCGGUGGCGUGGCCGGGA 24 12558
BCLllA-10572 + AGGGGCGGGCCGAGGGGA 18 12559
BCLllA-10573 + GAGGGGCGGGCCGAGGGGA 19 12560
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 12561
BCLllA-10574 + GGGAGGGGCGGGCCGAGGGGA 21 12562
BCLllA-10575 + GGGGAGGGGCGGGCCGAGGGGA 22 12563
BCLllA-10576 + GGGGGAGGGGCGGGCCGAGGGGA 23 12564
BCLllA-10577 + CGGGGGAGGGGCGGGCCGAGGGGA 24 12565
BCLllA-10578 + CAAUGGCCAGUGCGGGGA 18 12566
BCLllA-10579 + CCAAUGGCCAGUGCGGGGA 19 12567 BCLllA-9558 + GCCAAUGGCCAGUGCGGGGA 20 12568
BCLllA-10580 + AGCCAAUGGCCAGUGCGGGGA 21 12569
BCLllA-10581 + AAGCCAAUGGCCAGUGCGGGGA 22 12570
BCLllA-10582 + CAAGCCAAUGGCCAGUGCGGGGA 23 12571
BCLllA-10583 + ACAAGCCAAUGGCCAGUGCGGGGA 24 12572
BCLllA-10584 + GUCAGGAGUCUGGAUGGA 18 12573
BCLllA-10585 + CGUCAGGAGUCUGGAUGGA 19 12574
BCLllA-10586 + ACGUCAGGAGUCUGGAUGGA 20 12575
BCLllA-10587 + AACGUCAGGAGUCUGGAUGGA 21 12576
BCLllA-10588 + GAACGUCAGGAGUCUGGAUGGA 22 12577
BCLllA-10589 + UGAACGUCAGGAGUCUGGAUGGA 23 12578
BCLllA-10590 + UUGAACGUCAGGAGUCUGGAUGGA 24 12579
BCLllA-10591 + AGAGAGAGAAGAGAGAUA 18 12580
BCLllA-10592 + GAGAGAGAGAAGAGAGAUA 19 12581
BCLllA-10593 + AGAGAGAGAGAAGAGAGAUA 20 12582
BCLllA-10594 + GAGAGAGAGAGAAGAGAGAUA 21 12583
BCLllA-10595 + GGAGAGAGAGAGAAGAGAGAUA 22 12584
BCLllA-10596 + GGGAGAGAGAGAGAAGAGAGAUA 23 12585
BCLllA-10597 + AGGGAGAGAGAGAGAAGAGAGAUA 24 12586
BCLllA-10598 + GACAGAGACACACAAAAC 18 12587
BCLllA-10599 + GGACAGAGACACACAAAAC 19 12588
BCLllA-10600 + UGGACAGAGACACACAAAAC 20 12589
BCLllA-10601 + AUGGACAGAGACACACAAAAC 21 12590
BCLllA-10602 + GAUGGACAGAGACACACAAAAC 22 12591
BCLllA-10603 + GGAUGGACAGAGACACACAAAAC 23 12592
BCLllA-10604 + UGGAUGGACAGAGACACACAAAAC 24 12593
BCLllA-10605 + CGUGACGUCCCUGCGAAC 18 12594
BCLllA-10606 + ACGUGACGUCCCUGCGAAC 19 12595
BCLllA-10607 + GACGUGACGUCCCUGCGAAC 20 12596
BCLllA-10608 + GGACGUGACGUCCCUGCGAAC 21 12597
BCLllA-10609 + CGGACGUGACGUCCCUGCGAAC 22 12598
BCLllA-10610 + GCGGACGUGACGUCCCUGCGAAC 23 12599
BCLllA-10611 + UGCGGACGUGACGUCCCUGCGAAC 24 12600
BCLllA-10612 + CUGCUCCCCCCCACACAC 18 12601
BCLllA-10613 + CCUGCUCCCCCCCACACAC 19 12602
BCLllA-10614 + CCCUGCUCCCCCCCACACAC 20 12603
BCLllA-10615 + GCCCUGCUCCCCCCCACACAC 21 12604
BCLllA-10616 + CGCCCUGCUCCCCCCCACACAC 22 12605
BCLllA-10617 + GCGCCCUGCUCCCCCCCACACAC 23 12606
BCLllA-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 12607
BCLllA-10619 + UGGACAUGAAAAAGAGAC 18 12608
BCLllA-10620 + CUGGACAUGAAAAAGAGAC 19 12609 BCLllA-10621 + GCUGGACAUGAAAAAGAGAC 20 12610
BCLllA-10622 + GGCUGGACAUGAAAAAGAGAC 21 12611
BCLllA-10623 + GGGCUGGACAUGAAAAAGAGAC 22 12612
BCLllA-10624 + GGGGCUGGACAUGAAAAAGAGAC 23 12613
BCLllA-10625 + AGGGGCUGGACAUGAAAAAGAGAC 24 12614
BCLllA-10626 + ACACAUCAGGGGCUGGAC 18 12615
BCLllA-10627 + CACACAUCAGGGGCUGGAC 19 12616
BCLllA-10628 + ACACACAUCAGGGGCUGGAC 20 12617
BCLllA-10629 + GACACACAUCAGGGGCUGGAC 21 12618
BCLllA-10630 + GGACACACAUCAGGGGCUGGAC 22 12619
BCLllA-10631 + UGGACACACAUCAGGGGCUGGAC 23 12620
BCLllA-10632 + AUGGACACACAUCAGGGGCUGGAC 24 12621
BCLllA-6411 + UAUUAUUGGGUUACUUAC 18 12622
BCLllA-6412 + CUAUUAUUGGGUUACUUAC 19 12623
BCLllA-6413 + ACUAUUAUUGGGUUACUUAC 20 12624
BCLllA-6414 + UACUAUUAUUGGGU UACUUAC 21 12625
BCLllA-6415 + U UACUAUUAUUGGGUUACUUAC 22 12626
BCLllA-6416 + AUUACUAUUAUUGGGUUACUUAC 23 12627
BCLllA-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 12628
BCLllA-10633 + A A A A U G G C A A A AG C CC C C 18 12629
BCLllA-10634 + A A A A A U G G C A A A AG C CC C C 19 12630
BCLllA-10635 + AAAAAAUGGCAAAAGCCCCC 20 12631
BCLllA-10636 + AAAAAAAUGGCAAAAGCCCCC 21 12632
BCLllA-10637 + GAAAAAAAUGGCAAAAGCCCCC 22 12633
BCLllA-10638 + UGAAAAAAAUGGCAAAAGCCCCC 23 12634
BCLllA-10639 + AUGAAAAAAAUGGCAAAAGCCCCC 24 12635
BCLllA-10640 + ACGCCAGACGCGGCCCCC 18 12636
BCLllA-10641 + GACGCCAGACGCGGCCCCC 19 12637
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 12638
BCLllA-10642 + CGGACGCCAGACGCGGCCCCC 21 12639
BCLllA-10643 + GCGGACGCCAGACGCGGCCCCC 22 12640
BCLllA-10644 + CGCGGACGCCAGACGCGGCCCCC 23 12641
BCLllA-10645 + CCGCGGACGCCAGACGCGGCCCCC 24 12642
BCLllA-10646 + GACGCCAGACGCGGCCCC 18 12643
BCLllA-10647 + GGACGCCAGACGCGGCCCC 19 12644
BCLllA-4362 + CGGACGCCAGACGCGGCCCC 20 12645
BCLllA-10648 + GCGGACGCCAGACGCGGCCCC 21 12646
BCLllA-10649 + CGCGGACGCCAGACGCGGCCCC 22 12647
BCLllA-10650 + CCGCGGACGCCAGACGCGGCCCC 23 12648
BCLllA-10651 + UCCGCGGACGCCAGACGCGGCCCC 24 12649
BCLllA-10652 + GGACGCCAGACGCGGCCC 18 12650
BCLllA-10653 + CGGACGCCAGACGCGGCCC 19 12651 BCLllA-4825 + GCGGACGCCAGACGCGGCCC 20 12652
BCLllA-10654 + CG CGGACG CCAGACG CGGCCC 21 12653
BCLllA-10655 + CCGCGGACGCCAGACGCGGCCC 22 12654
BCLllA-10656 + UCCGCGGACGCCAGACGCGGCCC 23 12655
BCLllA-10657 + CUCCGCGGACGCCAGACGCGGCCC 24 12656
BCLllA-10658 + CCGGGGGAGGGGCGGGCC 18 12657
BCLllA-10659 + CCCGGGGGAGGGGCGGGCC 19 12658
BCLllA-5064 + CCCCGGGGGAGGGGCGGGCC 20 12659
BCLllA-10660 + CCCCCGGGGGAGGGGCGGGCC 21 12660
BCLllA-10661 + GCCCCCGGGGGAGGGGCGGGCC 22 12661
BCLllA-10662 + GGCCCCCGGGGGAGGGGCGGGCC 23 12662
BCLllA-10663 + CGGCCCCCGGGGGAGGGGCGGGCC 24 12663
BCLllA-10664 + GGAGGGGGCGCUGGGGCC 18 12664
BCLllA-10665 + GGGAGGGGGCGCUGGGGCC 19 12665
BCLllA-10666 + GGGGAGGGGGCGCUGGGGCC 20 12666
BCLllA-10667 + AGGGGAGGGGGCGCUGGGGCC 21 12667
BCLllA-10668 + GAGGGGAGGGGGCGCUGGGGCC 22 12668
BCLllA-10669 + CGAGGGGAGGGGGCGCUGGGGCC 23 12669
BCLllA-10670 + CCGAGGGGAGGGGGCGCUGGGGCC 24 12670
BCLllA-10671 + CGCGGCGGUGGCGUGGCC 18 12671
BCLllA-10672 + CCGCGGCGGUGGCGUGGCC 19 12672
BCLllA-9718 + GCCGCGGCGGUGGCGUGGCC 20 12673
BCLllA-10673 + CGCCGCGGCGGUGGCGUGGCC 21 12674
BCLllA-10674 + GCGCCGCGGCGGUGGCGUGGCC 22 12675
BCLllA-10675 + AGCGCCGCGGCGGUGGCGUGGCC 23 12676
BCLllA-10676 + GAGCGCCGCGGCGGUGGCGUGGCC 24 12677
BCLllA-10677 + UGCGGGGCGGGGGGCUCC 18 12678
BCLllA-10678 + GUGCGGGGCGGGGGGCUCC 19 12679
BCLllA-10679 + GGUGCGGGGCGGGGGGCUCC 20 12680
BCLllA-10680 + AGGUGCGGGGCGGGGGGCUCC 21 12681
BCLllA-10681 + GAGGUGCGGGGCGGGGGGCUCC 22 12682
BCLllA-10682 + GGAGGUGCGGGGCGGGGGGCUCC 23 12683
BCLllA-10683 + GGGAGGUGCGGGGCGGGGGGCUCC 24 12684
BCLllA-10684 + AACAUGGGCAGGGCGAGC 18 12685
BCLllA-10685 + AAACAUGGGCAGGGCGAGC 19 12686
BCLllA-9721 + AAAACAUGGGCAGGGCGAGC 20 12687
BCLllA-10686 + CAAAACAUGGGCAGGGCGAGC 21 12688
BCLllA-10687 + ACAAAACAUGGGCAGGGCGAGC 22 12689
BCLllA-10688 + CA CAAAACAUGGGCAGGGCGAGC 23 12690
BCLllA-10689 + ACACAAAACAUGGGCAGGGCGAGC 24 12691
BCLllA-10690 + GCCGAGGGGAGGGGGCGC 18 12692
BCLllA-10691 + GGCCGAGGGGAGGGGGCGC 19 12693 BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 12694
BCLllA-10692 + CGGGCCGAGGGGAGGGGGCGC 21 12695
BCLllA-10693 + GCGGGCCGAGGGGAGGGGGCGC 22 12696
BCLllA-10694 + GGCGGGCCGAGGGGAGGGGGCGC 23 12697
BCLllA-10695 + GGGCGGGCCGAGGGGAGGGGGCGC 24 12698
BCLllA-10696 + AUAAUACAAAGAUGGCGC 18 12699
BCLllA-10697 + AAUAAUACAAAGAUGGCGC 19 12700
BCLllA-9565 + AAAUAAUACAAAGAUGGCGC 20 12701
BCLllA-10698 + GAAAUAAUACAAAGAUGGCGC 21 12702
BCLllA-10699 + AGAAAUAAUACAAAGAUGGCGC 22 12703
BCLllA-10700 + UAGAAAUAAUACAAAGAUGGCGC 23 12704
BCLllA-10701 + U UAGAAAUAAUACAAAGAUGGCGC 24 12705
BCLllA-10702 + GAGGGGGAGGUGCGGGGC 18 12706
BCLllA-10703 + GGAGGGGGAGGUGCGGGGC 19 12707
BCLllA-9724 + GGGAGGGGGAGGUGCGGGGC 20 12708
BCLllA-10704 + GGGGAGGGGGAGGUGCGGGGC 21 12709
BCLllA-10705 + CGGGGAGGGGGAGGUGCGGGGC 22 12710
BCLllA-10706 + GCGGGGAGGGGGAGGUGCGGGGC 23 12711
BCLllA-10707 + UGCGGGGAGGGGGAGGUGCGGGGC 24 12712
BCLllA-10708 + CCGCGGCGGUGGCGUGGC 18 12713
BCLllA-10709 + GCCGCGGCGGUGGCGUGGC 19 12714
BCLllA-9725 + CGCCGCGGCGGUGGCGUGGC 20 12715
BCLllA-10710 + GCGCCGCGGCGGUGGCGUGGC 21 12716
BCLllA-10711 + AGCGCCGCGGCGGUGGCGUGGC 22 12717
BCLllA-10712 + GAGCGCCGCGGCGGUGGCGUGGC 23 12718
BCLllA-10713 + CGAGCGCCGCGGCGGUGGCGUGGC 24 12719
BCLllA-10714 + CAAGCCAAUGGCCAGUGC 18 12720
BCLllA-10715 + ACAAGCCAAUGGCCAGUGC 19 12721
BCLllA-9727 + GACAAGCCAAUGGCCAGUGC 20 12722
BCLllA-10716 + GGACAAGCCAAUGGCCAGUGC 21 12723
BCLllA-10717 + AGGACAAGCCAAUGGCCAGUGC 22 12724
BCLllA-10718 + CAGGACAAGCCAAUGGCCAGUGC 23 12725
BCLllA-10719 + C C AG G AC A AG CCAAUGGCCAGUGC 24 12726
BCLllA-10720 + CACCAAUGGACACACAUC 18 12727
BCLllA-10721 + ACACCAAUGGACACACAUC 19 12728
BCLllA-9729 + CACACCAAUGGACACACAUC 20 12729
BCLllA-10722 + UCACACCAAUGGACACACAUC 21 12730
BCLllA-10723 + CUCA CACCAAUGGACACACAUC 22 12731
BCLllA-10724 + GCUCACACCAAUGGACACACAUC 23 12732
BCLllA-10725 + AGCUCACACCAAUGGACACACAUC 24 12733
BCLllA-10726 + GACGGCUCGGUUCACAUC 18 12734
BCLllA-10727 + CGACGGCUCGGUUCACAUC 19 12735 BCLllA-9568 + ACGACGGCUCGGUUCACAUC 20 12736
BCLllA-10728 + GACGACGGCUCGGUUCACAUC 21 12737
BCLllA-10729 + GGACGACGGCUCGGUUCACAUC 22 12738
BCLllA-10730 + CGGACGACGGCUCGGUUCACAUC 23 12739
BCLllA-10731 + GCGGACGACGGCUCGGU UCACAUC 24 12740
BCLllA-10732 + U UAGAAAGAAGGAGACUC 18 12741
BCLllA-10733 + G U U AG AAAG AAGG AG ACU C 19 12742
BCLllA-10734 + GGUUAGAAAGAAGGAGACUC 20 12743
BCLllA-10735 + GGGUUAGAAAGAAGGAGACUC 21 12744
BCLllA-10736 + CGGGUUAGAAAGAAGGAGACUC 22 12745
BCLllA-10737 + CCGGGUUAGAAAGAAGGAGACUC 23 12746
BCLllA-10738 + GCCGGGU UAGAAAGAAGGAGACUC 24 12747
BCLllA-10739 + UCUCUUUUACCUCGACUC 18 12748
BCLllA-10740 + AUCUCUUU UACCUCGACUC 19 12749
BCLllA-10741 + UAUCUCUU UUACCUCGACUC 20 12750
BCLllA-10742 + UUAUCUCU UUUACCUCGACUC 21 12751
BCLllA-10743 + UUUAUCUCUUUUACCUCGACUC 22 12752
BCLllA-10744 + CUUUAUCUCUUUUACCUCGACUC 23 12753
BCLllA-10745 + CCUU UAUCUCUUU UACCUCGACUC 24 12754
BCLllA-10746 + CUCUCGGAGGUUUUUCUC 18 12755
BCLllA-10747 + ACUCUCGGAGGUUUUUCUC 19 12756
BCLllA-10748 + GACUCUCGGAGGUUUUUCUC 20 12757
BCLllA-10749 + CGACUCUCGGAGGUUU UUCUC 21 12758
BCLllA-10750 + UCGACUCUCGGAGGUU UUUCUC 22 12759
BCLllA-10751 + CUCGACUCUCGGAGGU UUUUCUC 23 12760
BCLllA-10752 + CCUCGACUCUCGGAGGUUUUUCUC 24 12761
BCLllA-10753 + AAAAAAAAAAAAAAAAAG 18 12762
BCLllA-10754 + AAAAAAAAAAAAAAAAAAG 19 12763
BCLllA-4526 + AAAAAAAAAAAAAAAAAAAG 20 12764
BCLllA-10755 + AAAAAAAAAAAAAAAAAAAAG 21 12765
BCLllA-10756 + AAAAAAAAAAAAAAAAAAAAAG 22 12766
BCLllA-10757 + AAAAAAAAAAAAAAAAAAAAAAG 23 12767
BCLllA-10758 + AAAAAAAAAAAAAAAAAAAAAAAG 24 12768
BCLllA-10759 + GAGAGCCGGGUUAGAAAG 18 12769
BCLllA-10760 + GGAGAGCCGGGUUAGAAAG 19 12770
BCLllA-10761 + GGGAGAGCCGGGUUAGAAAG 20 12771
BCLllA-10762 + CGGGAGAGCCGGGUUAGAAAG 21 12772
BCLllA-10763 + UCGGGAGAGCCGGGUUAGAAAG 22 12773
BCLllA-10764 + AUCGGGAGAGCCGGGUUAGAAAG 23 12774
BCLllA-10765 + CAUCGGGAGAGCCGGGU UAGAAAG 24 12775
BCLllA-10766 + GGGCGAGCAGGAGAGAAG 18 12776
BCLllA-10767 + AGGGCGAGCAGGAGAGAAG 19 12777 BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 12778
BCLllA-10768 + GCAGGGCGAGCAGGAGAGAAG 21 12779
BCLllA-10769 + GGCAGGGCGAGCAGGAGAGAAG 22 12780
BCLllA-10770 + GGGCAGGGCGAGCAGGAGAGAAG 23 12781
BCLllA-10771 + UGGGCAGGGCGAGCAGGAGAGAAG 24 12782
BCLllA-10772 + AGAAGGGGAGGAGGGAAG 18 12783
BCLllA-10773 + GAGAAGGGGAGGAGGGAAG 19 12784
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 12785
BCLllA-10774 + GAGAGAAGGGGAGGAGGGAAG 21 12786
BCLllA-10775 + GGAGAGAAGGGGAGGAGGGAAG 22 12787
BCLllA-10776 + AGGAGAGAAGGGGAGGAGGGAAG 23 12788
BCLllA-10777 + CAGGAGAGAAGGGGAGGAGGGAAG 24 12789
BCLllA-10778 + ACACGGCAAUGGUUCCAG 18 12790
BCLllA-10779 + UACACGGCAAUGGUUCCAG 19 12791
BCLllA-10780 + AUACACGGCAAUGGUUCCAG 20 12792
BCLllA-10781 + CAUACACGGCAAUGGU UCCAG 21 12793
BCLllA-10782 + GCAUACACGGCAAUGGU UCCAG 22 12794
BCLllA-10783 + UGCAUACACGGCAAUGGUUCCAG 23 12795
BCLllA-10784 + GUGCAUACACGGCAAUGGUUCCAG 24 12796
BCLllA-10785 + CAUGGGCAGGGCGAGCAG 18 12797
BCLllA-10786 + ACAUGGGCAGGGCGAGCAG 19 12798
BCLllA-10787 + AACAUGGGCAGGGCGAGCAG 20 12799
BCLllA-10788 + AAA CAUGGGCAGGGCGAGCAG 21 12800
BCLllA-10789 + AAAACAUGGGCAGGGCGAGCAG 22 12801
BCLllA-10790 + CAAAACAUGGGCAGGGCGAGCAG 23 12802
BCLllA-10791 + ACAAAA CAUGGGCAGGGCGAGCAG 24 12803
BCLllA-10792 + GGAGAGAGAGAGAGAGAG 18 12804
BCLllA-10793 + GGGAGAGAGAGAGAGAGAG 19 12805
BCLllA-4999 + AGGGAGAGAGAGAGAGAGAG 20 12806
BCLllA-10794 + GAGGGAGAGAGAGAGAGAGAG 21 12807
BCLllA-10795 + AGAGGGAGAGAGAGAGAGAGAG 22 12808
BCLllA-10796 + UAGAGGGAGAGAGAGAGAGAGAG 23 12809
BCLllA-10797 + AUAGAGGGAGAGAGAGAGAGAGAG 24 12810
BCLllA-10798 + AAAGAGGGAGAGAGAGAG 18 12811
BCLllA-10799 + AAAAGAGGGAGAGAGAGAG 19 12812
BCLllA-4916 + AAAAAGAGGGAGAGAGAGAG 20 12813
BCLllA-10800 + AAAAAAGAGGGAGAGAGAGAG 21 12814
BCLllA-10801 + AAAAAAAGAGGGAGAGAGAGAG 22 12815
BCLllA-10802 + AAAAAAAAGAGGGAGAGAGAGAG 23 12816
BCLllA-10803 + AAAAAAAAAGAGGGAGAGAGAGAG 24 12817
BCLllA-10804 + GCAGGGCGAGCAGGAGAG 18 12818
BCLllA-10805 + GGCAGGGCGAGCAGGAGAG 19 12819 BCLllA-4870 + GGGCAGGGCGAGCAGGAGAG 20 12820
BCLllA-10806 + UGGGCAGGGCGAGCAGGAGAG 21 12821
BCLllA-10807 + AUGGGCAGGGCGAGCAGGAGAG 22 12822
BCLllA-10808 + CAUGGGCAGGGCGAGCAGGAGAG 23 12823
BCLllA-10809 + ACAUGGGCAGGGCGAGCAGGAGAG 24 12824
BCLllA-10810 + GUGGCGUGGCCGGGAGAG 18 12825
BCLllA-10811 + GGUGGCGUGGCCGGGAGAG 19 12826
BCLllA-10812 + CGGUGGCGUGGCCGGGAGAG 20 12827
BCLllA-10813 + GCGGUGGCGUGGCCGGGAGAG 21 12828
BCLllA-10814 + GGCGGUGGCGUGGCCGGGAGAG 22 12829
BCLllA-10815 + CGGCGGUGGCGUGGCCGGGAGAG 23 12830
BCLllA-10816 + GCGGCGGUGGCGUGGCCGGGAGAG 24 12831
BCLllA-10817 + GGGGAGGGGCGGGCCGAG 18 12832
BCLllA-10818 + GGGGGAGGGGCGGGCCGAG 19 12833
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 12834
BCLllA-10819 + CCGGGGGAGGGGCGGGCCGAG 21 12835
BCLllA-10820 + CCCGGGGGAGGGGCGGGCCGAG 22 12836
BCLllA-10821 + CCCCGGGGGAGGGGCGGGCCGAG 23 12837
BCLllA-10822 + CCCCCGGGGGAGGGGCGGGCCGAG 24 12838
BCLllA-10823 + AAACAUGGGCAGGGCGAG 18 12839
BCLllA-10824 + A A A AC A UGGGCAGGGCGAG 19 12840
BCLllA-10825 + CAAAACAUGGGCAGGGCGAG 20 12841
BCLllA-10826 + ACAAAACAUGGGCAGGGCGAG 21 12842
BCLllA-10827 + C ACA AAACAU G GG CAG G G CG AG 22 12843
BCLllA-10828 + ACACAAAACAUGGGCAGGGCGAG 23 12844
BCLllA-10829 + CACA CAAAACAUGGGCAGGGCGAG 24 12845
BCLllA-10830 + AGCAGGAGAGAAGGGGAG 18 12846
BCLllA-10831 + GAGCAGGAGAGAAGGGGAG 19 12847
BCLllA-5082 + CGAGCAGGAGAGAAGGGGAG 20 12848
BCLllA-10832 + GCGAGCAGGAGAGAAGGGGAG 21 12849
BCLllA-10833 + GGCGAGCAGGAGAGAAGGGGAG 22 12850
BCLllA-10834 + GGGCGAGCAGGAGAGAAGGGGAG 23 12851
BCLllA-10835 + AGGGCGAGCAGGAGAGAAGGGGAG 24 12852
BCLllA-10836 + AAUGGCCAGUGCGGGGAG 18 12853
BCLllA-10837 + CAAUGGCCAGUGCGGGGAG 19 12854
BCLllA-9572 + CCAAUGGCCAGUGCGGGGAG 20 12855
BCLllA-10838 + GCCAAUGGCCAGUGCGGGGAG 21 12856
BCLllA-10839 + AGCCAAUGGCCAGUGCGGGGAG 22 12857
BCLllA-10840 + AAGCCAAUGGCCAGUGCGGGGAG 23 12858
BCLllA-10841 + CAAGCCAAUGGCCAGUGCGGGGAG 24 12859
BCLllA-10842 + GAGAGAGAAGAGAGAUAG 18 12860
BCLllA-10843 + AGAGAGAGAAGAGAGAUAG 19 12861 BCLllA-9740 + GAGAGAGAGAAGAGAGAUAG 20 12862
BCLllA-10844 + AGAGAGAGAGAAGAGAGAUAG 21 12863
BCLllA-10845 + GAGAGAGAGAGAAGAGAGAUAG 22 12864
BCLllA-10846 + GGAGAGAGAGAGAAGAGAGAUAG 23 12865
BCLllA-10847 + GGGAGAGAGAGAGAAGAGAGAUAG 24 12866
BCLllA-10848 + CGCCAGACGCGGCCCCCG 18 12867
BCLllA-10849 + ACGCCAGACGCGGCCCCCG 19 12868
BCLllA-4351 + GACGCCAGACGCGGCCCCCG 20 12869
BCLllA-10850 + GGACGCCAGACGCGGCCCCCG 21 12870
BCLllA-10851 + CGGACGCCAGACGCGGCCCCCG 22 12871
BCLllA-10852 + GCGGACGCCAGACGCGGCCCCCG 23 12872
BCLllA-10853 + CGCGGACGCCAGACGCGGCCCCCG 24 12873
BCLllA-10854 + CGGGGGAGGGGCGGGCCG 18 12874
BCLllA-10855 + CCGGGGGAGGGGCGGGCCG 19 12875
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 12876
BCLllA-10856 + CCCCGGGGGAGGGGCGGGCCG 21 12877
BCLllA-10857 + CCCCCGGGGGAGGGGCGGGCCG 22 12878
BCLllA-10858 + GCCCCCGGGGGAGGGGCGGGCCG 23 12879
BCLllA-10859 + GGCCCCCGGGGGAGGGGCGGGCCG 24 12880
BCLllA-10860 + GCGGCGGCGGCGGCGGCG 18 12881
BCLllA-10861 + GGCGGCGGCGGCGGCGGCG 19 12882
BCLllA-5097 + CGGCGGCGGCGGCGGCGGCG 20 12883
BCLllA-10862 + GCGGCGGCGGCGGCGGCGGCG 21 12884
BCLllA-10863 + GGCGGCGGCGGCGGCGGCGGCG 22 12885
BCLllA-10864 + CGGCGGCGGCGGCGGCGGCGGCG 23 12886
BCLllA-10865 + GCGGCGGCGGCGGCGGCGGCGGCG 24 12887
BCLllA-10866 + AGGGGGAGGUGCGGGGCG 18 12888
BCLllA-10867 + GAGGGGGAGGUGCGGGGCG 19 12889
BCLllA-9749 + GGAGGGGGAGGUGCGGGGCG 20 12890
BCLllA-10868 + GGGAGGGGGAGGUGCGGGGCG 21 12891
BCLllA-10869 + GGGGAGGGGGAGGUGCGGGGCG 22 12892
BCLllA-10870 + CGGGGAGGGGGAGGUGCGGGGCG 23 12893
BCLllA-10871 + GCGGGGAGGGGGAGGUGCGGGGCG 24 12894
BCLllA-10872 + GGCCGAGGGGAGGGGGCG 18 12895
BCLllA-10873 + GGGCCGAGGGGAGGGGGCG 19 12896
BCLllA-5099 + CGGGCCGAGGGGAGGGGGCG 20 12897
BCLllA-10874 + GCGGGCCGAGGGGAGGGGGCG 21 12898
BCLllA-10875 + GGCGGGCCGAGGGGAGGGGGCG 22 12899
BCLllA-10876 + GGGCGGGCCGAGGGGAGGGGGCG 23 12900
BCLllA-10877 + GGGGCGGGCCGAGGGGAGGGGGCG 24 12901
BCLllA-10878 + AAUAAUACAAAGAUGGCG 18 12902
BCLllA-10879 + A A A U A A U AC A A AG A U G G CG 19 12903 BCLllA-10880 + GAAAUAAUACAAAGAUGGCG 20 12904
BCLllA-10881 + AG AAA U A A U AC A A AG A U G G CG 21 12905
BCLllA-10882 + UAGAAAUAAUACAAAGAUGGCG 22 12906
BCLllA-10883 + UUAGAAAUAAUACAAAGAUGGCG 23 12907
BCLllA-10884 + AUUAGAAAUAAUACAAAGAUGGCG 24 12908
BCLllA-10885 + AAGCCAAUGGCCAGUGCG 18 12909
BCLllA-10886 + CAAGCCAAUGGCCAGUGCG 19 12910
BCLllA-9751 + ACAAGCCAAUGGCCAGUGCG 20 12911
BCLllA-10887 + GACAAGCCAAUGGCCAGUGCG 21 12912
BCLllA-10888 + GGACAAGCCAAUGGCCAGUGCG 22 12913
BCLllA-10889 + AGGACAAGCCAAUGGCCAGUGCG 23 12914
BCLllA-10890 + CAGGACAAGCCAAUGGCCAGUGCG 24 12915
BCLllA-6490 + GGGUUUGCCUUGCUUGCG 18 12916
BCLllA-6491 + GGGGUUUGCCUUGCUUGCG 19 12917
BCLllA-6492 + UGGGGUUUGCCUUGCUUGCG 20 12918
BCLllA-6493 + CUGGGGUUUGCCUUGCUUGCG 21 12919
BCLllA-6494 + GCUGGGGUUUGCCU UGCUUGCG 22 12920
BCLllA-6495 + UGCUGGGGUU UGCCUUGCUUGCG 23 12921
BCLllA-6496 + GUGCUGGGGUUUGCCU UGCUUGCG 24 12922
BCLllA-10891 + CAGGGGUGGGAGGAAAGG 18 12923
BCLllA-10892 + GCAGGGGUGGGAGGAAAGG 19 12924
BCLllA-10893 + GGCAGGGGUGGGAGGAAAGG 20 12925
BCLllA-10894 + UGGCAGGGGUGGGAGGAAAGG 21 12926
BCLllA-10895 + GUGGCAGGGGUGGGAGGAAAGG 22 12927
BCLllA-10896 + GGUGGCAGGGGUGGGAGGAAAGG 23 12928
BCLllA-10897 + GGGUGGCAGGGGUGGGAGGAAAGG 24 12929
BCLllA-10898 + ACACAAAACAUGGGCAGG 18 12930
BCLllA-10899 + CACACAAAACAUGGGCAGG 19 12931
BCLllA-10900 + ACACACAAAACAUGGGCAGG 20 12932
BCLllA-10901 + GACACACAAAACAUGGGCAGG 21 12933
BCLllA-10902 + AGACACACAAAACAUGGGCAGG 22 12934
BCLllA-10903 + GAGACACACAAAACAUGGGCAGG 23 12935
BCLllA-10904 + AGAGACACACAAAACAUGGGCAGG 24 12936
BCLllA-10905 + A A A A A A A A A A AAA AG AG G 18 12937
BCLllA-10906 + AAAAAAAAAAAAAAAGAGG 19 12938
BCLllA-4903 + A AAAAAAAAAAAAAAAG AG G 20 12939
BCLllA-10907 + A A A A A A A A A A A A A A A A AG AG G 21 12940
BCLllA-10908 + A AAAAAAAAAAAAAAAAAG AG G 22 12941
BCLllA-10909 + A A A A A A A A A A A A A A A AAA AG AG G 23 12942
BCLllA-10910 + A AAAAAAAAAAAAAAAAAAAG AG G 24 12943
BCLllA-10911 + AGAGAAGAGAGAUAGAGG 18 12944
BCLllA-10912 + GAGAGAAGAGAGAUAGAGG 19 12945 BCLllA-10913 + AGAGAGAAGAGAGAUAGAGG 20 12946
BCLllA-10914 + GAGAGAGAAGAGAGAUAGAGG 21 12947
BCLllA-10915 + AGAGAGAGAAGAGAGAUAGAGG 22 12948
BCLllA-10916 + GAGAGAGAGAAGAGAGAUAGAGG 23 12949
BCLllA-10917 + AGAGAGAGAGAAGAGAGAUAGAGG 24 12950
BCLllA-10918 + GCAGGAGAGAAGGGGAGG 18 12951
BCLllA-10919 + AGCAGGAGAGAAGGGGAGG 19 12952
BCLllA-4408 + GAGCAGGAGAGAAGGGGAGG 20 12953
BCLllA-10920 + CGAGCAGGAGAGAAGGGGAGG 21 12954
BCLllA-10921 + GCGAGCAGGAGAGAAGGGGAGG 22 12955
BCLllA-10922 + GGCGAGCAGGAGAGAAGGGGAGG 23 12956
BCLllA-10923 + GGGCGAGCAGGAGAGAAGGGGAGG 24 12957
BCLllA-10924 + AUGGCCAGUGCGGGGAGG 18 12958
BCLllA-10925 + AAUGGCCAGUGCGGGGAGG 19 12959
BCLllA-9756 + CAAUGGCCAGUGCGGGGAGG 20 12960
BCLllA-10926 + CCAAUGGCCAGUGCGGGGAGG 21 12961
BCLllA-10927 + GCCAAUGGCCAGUGCGGGGAGG 22 12962
BCLllA-10928 + AGCCAAUGGCCAGUGCGGGGAGG 23 12963
BCLllA-10929 + AAGCCAAUGGCCAGUGCGGGGAGG 24 12964
BCLllA-10930 + GCCAGACGCGGCCCCCGG 18 12965
BCLllA-10931 + CGCCAGACGCGGCCCCCGG 19 12966
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 12967
BCLllA-10932 + GACGCCAGACGCGGCCCCCGG 21 12968
BCLllA-10933 + GGACGCCAGACGCGGCCCCCGG 22 12969
BCLllA-10934 + CGGACGCCAGACGCGGCCCCCGG 23 12970
BCLllA-10935 + GCGGACGCCAGACGCGGCCCCCGG 24 12971
BCLllA-10936 + CGGCGGUGGCGUGGCCGG 18 12972
BCLllA-10937 + GCGGCGGUGGCGUGGCCGG 19 12973
BCLllA-10938 + CGCGGCGGUGGCGUGGCCGG 20 12974
BCLllA-10939 + CCGCGGCGGUGGCGUGGCCGG 21 12975
BCLllA-10940 + GCCGCGGCGGUGGCGUGGCCGG 22 12976
BCLllA-10941 + CGCCGCGGCGGUGGCGUGGCCGG 23 12977
BCLllA-10942 + GCGCCGCGGCGGUGGCGUGGCCGG 24 12978
BCLllA-10943 + CGGCGGCGGCGGCGGCGG 18 12979
BCLllA-10944 + GCGGCGGCGGCGGCGGCGG 19 12980
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 12981
BCLllA-10945 + CGGCGGCGGCGGCGGCGGCGG 21 12982
BCLllA-10946 + GCGGCGGCGGCGGCGGCGGCGG 22 12983
BCLllA-10947 + GGCGGCGGCGGCGGCGGCGGCGG 23 12984
BCLllA-10948 + CGGCGGCGGCGGCGGCGGCGGCGG 24 12985
BCLllA-10949 + CGGCUCGGUUCACAUCGG 18 12986
BCLllA-10950 + ACGGCUCGGUUCACAUCGG 19 12987 BCLllA-10951 + GACGGCUCGGUUCACAUCGG 20 12988
BCLllA-10952 + CGACGGCUCGGUUCACAUCGG 21 12989
BCLllA-10953 + ACGACGGCUCGGUUCACAUCGG 22 12990
BCLllA-10954 + GACGACGGCUCGGUUCACAUCGG 23 12991
BCLllA-10955 + GGACGACGGCUCGGUUCACAUCGG 24 12992
BCLllA-10956 + AGGGGUGGGAGGAAAGGG 18 12993
BCLllA-10957 + CAGGGGUGGGAGGAAAGGG 19 12994
BCLllA-9759 + GCAGGGGUGGGAGGAAAGGG 20 12995
BCLllA-10958 + GGCAGGGGUGGGAGGAAAGGG 21 12996
BCLllA-10959 + UGGCAGGGGUGGGAGGAAAGGG 22 12997
BCLllA-10960 + GUGGCAGGGGUGGGAGGAAAGGG 23 12998
BCLllA-10961 + GGUGGCAGGGGUGGGAGGAAAGGG 24 12999
BCLllA-10962 + GCGAGCAGGAGAGAAGGG 18 13000
BCLllA-10963 + GGCGAGCAGGAGAGAAGGG 19 13001
BCLllA-4873 + GGGCGAGCAGGAGAGAAGGG 20 13002
BCLllA-10964 + AGGGCGAGCAGGAGAGAAGGG 21 13003
BCLllA-10965 + CAGGGCGAGCAGGAGAGAAGGG 22 13004
BCLllA-10966 + GCAGGGCGAGCAGGAGAGAAGGG 23 13005
BCLllA-10967 + GGCAGGGCGAGCAGGAGAGAAGGG 24 13006
BCLllA-10968 + AAGAAAGGGGUGGCAGGG 18 13007
BCLllA-10969 + GAAGAAAGGGGUGGCAGGG 19 13008
BCLllA-10970 + AGAAGAAAGGGGUGGCAGGG 20 13009
BCLllA-10971 + GAGAAGAAAGGGGUGGCAGGG 21 13010
BCLllA-10972 + AGAGAAGAAAGGGGUGGCAGGG 22 13011
BCLllA-10973 + GAGAGAAGAAAGGGGUGGCAGGG 23 13012
BCLllA-10974 + GGAGAGAAGAAAGGGGUGGCAGGG 24 13013
BCLllA-10975 + GGAGGGGCGGGCCGAGGG 18 13014
BCLllA-10976 + GGGAGGGGCGGGCCGAGGG 19 13015
BCLllA-4875 + GGGGAGGGGCGGGCCGAGGG 20 13016
BCLllA-10977 + GGGGGAGGGGCGGGCCGAGGG 21 13017
BCLllA-10978 + CGGGGGAGGGGCGGGCCGAGGG 22 13018
BCLllA-10979 + CCGGGGGAGGGGCGGGCCGAGGG 23 13019
BCLllA-10980 + CCCGGGGGAGGGGCGGGCCGAGGG 24 13020
BCLllA-10981 + GAGAGAAGGGGAGGAGGG 18 13021
BCLllA-10982 + GGAGAGAAGGGGAGGAGGG 19 13022
BCLllA-4998 + AGGAGAGAAGGGGAGGAGGG 20 13023
BCLllA-10983 + CAGGAGAGAAGGGGAGGAGGG 21 13024
BCLllA-10984 + GCAGGAGAGAAGGGGAGGAGGG 22 13025
BCLllA-10985 + AGCAGGAGAGAAGGGGAGGAGGG 23 13026
BCLllA-10986 + GAGCAGGAGAGAAGGGGAGGAGGG 24 13027
BCLllA-10987 + GCGGCCCCCGGGGGAGGG 18 13028
BCLllA-10988 + CGCGGCCCCCGGGGGAGGG 19 13029 BCLllA-4959 + ACGCGGCCCCCGGGGGAGGG 20 13030
BCLllA-10989 + GACGCGGCCCCCGGGGGAGGG 21 13031
BCLllA-10990 + AGACGCGGCCCCCGGGGGAGGG 22 13032
BCLllA-10991 + CAGACGCGGCCCCCGGGGGAGGG 23 13033
BCLllA-10992 + CCAGACGCGGCCCCCGGGGGAGGG 24 13034
BCLllA-10993 + CCCCGGGGGAGGGGCGGG 18 13035
BCLllA-10994 + CCCCCGGGGGAGGGGCGGG 19 13036
BCLllA-4817 + GCCCCCGGGGGAGGGGCGGG 20 13037
BCLllA-10995 + GGCCCCCGGGGGAGGGGCGGG 21 13038
BCLllA-10996 + CGGCCCCCGGGGGAGGGGCGGG 22 13039
BCLllA-10997 + GCGGCCCCCGGGGGAGGGGCGGG 23 13040
BCLllA-10998 + CGCGGCCCCCGGGGGAGGGGCGGG 24 13041
BCLllA-6504 + GACAUGGUGGGCUGCGGG 18 13042
BCLllA-6505 + AGACAUGGUGGGCUGCGGG 19 13043
BCLllA-6506 + GAGACAUGGUGGGCUGCGGG 20 13044
BCLllA-6507 + CGAGACAUGGUGGGCUGCGGG 21 13045
BCLllA-6508 + GCGAGACAUGGUGGGCUGCGGG 22 13046
BCLllA-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 13047
BCLllA-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 13048
BCLllA-10999 + GCCAAUGGCCAGUGCGGG 18 13049
BCLllA-11000 + AGCCAAUGGCCAGUGCGGG 19 13050
BCLllA-11001 + AAGCCAAUGGCCAGUGCGGG 20 13051
BCLllA-11002 + CAAGCCAAUGGCCAGUGCGGG 21 13052
BCLllA-11003 + ACAAGCCAAUGGCCAGUGCGGG 22 13053
BCLllA-11004 + GACAAGCCAAUGGCCAGUGCGGG 23 13054
BCLllA-11005 + GGACAAGCCAAUGGCCAGUGCGGG 24 13055
BCLllA-11006 + GGGAGGGGGAGGUGCGGG 18 13056
BCLllA-11007 + GGGGAGGGGGAGGUGCGGG 19 13057
BCLllA-11008 + CGGGGAGGGGGAGGUGCGGG 20 13058
BCLllA-11009 + GCGGGGAGGGGGAGGUGCGGG 21 13059
BCLllA-11010 + UGCGGGGAGGGGGAGGUGCGGG 22 13060
BCLllA-11011 + GUGCGGGGAGGGGGAGGUGCGGG 23 13061
BCLllA-11012 + AGUGCGGGGAGGGGGAGGUGCGGG 24 13062
BCLllA-11013 + CGAGCAGGAGAGAAGGGG 18 13063
BCLllA-11014 + GCGAGCAGGAGAGAAGGGG 19 13064
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 13065
BCLllA-11015 + GGGCGAGCAGGAGAGAAGGGG 21 13066
BCLllA-11016 + AGGGCGAGCAGGAGAGAAGGGG 22 13067
BCLllA-11017 + CAGGGCGAGCAGGAGAGAAGGGG 23 13068
BCLllA-11018 + GCAGGGCGAGCAGGAGAGAAGGGG 24 13069
BCLllA-11019 + AGAAAGGGGUGGCAGGGG 18 13070
BCLllA-11020 + AAGAAAGGGGUGGCAGGGG 19 13071 BCLllA-9762 + GAAGAAAGGGGUGGCAGGGG 20 13072
BCLllA-11021 + AGAAGAAAGGGGUGGCAGGGG 21 13073
BCLllA-11022 + GAGAAGAAAGGGGUGGCAGGGG 22 13074
BCLllA-11023 + AGAGAAGAAAGGGGUGGCAGGGG 23 13075
BCLllA-11024 + GAGAGAAGAAAGGGGUGGCAGGGG 24 13076
BCLllA-11025 + AUGGACACACAUCAGGGG 18 13077
BCLllA-11026 + AAUGGACACACAUCAGGGG 19 13078
BCLllA-11027 + CAAUGGACACACAUCAGGGG 20 13079
BCLllA-11028 + CCAAUGGACACACAUCAGGGG 21 13080
BCLllA-11029 + ACCAAUGGACACACAUCAGGGG 22 13081
BCLllA-11030 + CACCAAUGGACACACAUCAGGGG 23 13082
BCLllA-11031 + ACACCAAUGGACACACAUCAGGGG 24 13083
BCLllA-11032 + GAGGGGCGGGCCGAGGGG 18 13084
BCLllA-11033 + GGAGGGGCGGGCCGAGGGG 19 13085
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 13086
BCLllA-11034 + GGGGAGGGGCGGGCCGAGGGG 21 13087
BCLllA-11035 + GGGGGAGGGGCGGGCCGAGGGG 22 13088
BCLllA-11036 + CGGGGGAGGGGCGGGCCGAGGGG 23 13089
BCLllA-11037 + CCGGGGGAGGGGCGGGCCGAGGGG 24 13090
BCLllA-11038 + CAGACGCGGCCCCCGGGG 18 13091
BCLllA-11039 + CCAGACGCGGCCCCCGGGG 19 13092
BCLllA-4816 + GCCAGACGCGGCCCCCGGGG 20 13093
BCLllA-11040 + CGCCAGACGCGGCCCCCGGGG 21 13094
BCLllA-11041 + ACGCCAGACGCGGCCCCCGGGG 22 13095
BCLllA-11042 + GACGCCAGACGCGGCCCCCGGGG 23 13096
BCLllA-11043 + GGACGCCAGACGCGGCCCCCGGGG 24 13097
BCLllA-11044 + CCAAUGGCCAGUGCGGGG 18 13098
BCLllA-11045 + GCCAAUGGCCAGUGCGGGG 19 13099
BCLllA-9763 + AGCCAAUGGCCAGUGCGGGG 20 13100
BCLllA-11046 + AAGCCAAUGGCCAGUGCGGGG 21 13101
BCLllA-11047 + CAAGCCAAUGGCCAGUGCGGGG 22 13102
BCLllA-11048 + ACAAGCCAAUGGCCAGUGCGGGG 23 13103
BCLllA-11049 + GACAAGCCAAUGGCCAGUGCGGGG 24 13104
BCLllA-11050 + GGAGGGGGAGGUGCGGGG 18 13105
BCLllA-11051 + GGGAGGGGGAGGUGCGGGG 19 13106
BCLllA-9764 + GGGGAGGGGGAGGUGCGGGG 20 13107
BCLllA-11052 + CGGGGAGGGGGAGGUGCGGGG 21 13108
BCLllA-11053 + GCGGGGAGGGGGAGGUGCGGGG 22 13109
BCLllA-11054 + UGCGGGGAGGGGGAGGUGCGGGG 23 13110
BCLllA-11055 + GUGCGGGGAGGGGGAGGUGCGGGG 24 13111
BCLllA-11056 + AGACGCGGCCCCCGGGGG 18 13112
BCLllA-11057 + CAGACGCGGCCCCCGGGGG 19 13113 BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 13114
BCLllA-11058 + GCCAGACGCGGCCCCCGGGGG 21 13115
BCLllA-11059 + CGCCAGACGCGGCCCCCGGGGG 22 13116
BCLllA-11060 + ACGCCAGACGCGGCCCCCGGGGG 23 13117
BCLllA-11061 + GACGCCAGACGCGGCCCCCGGGGG 24 13118
BCLllA-11062 + UGGGAGGAAAGGGUGGGG 18 13119
BCLllA-11063 + GUGGGAGGAAAGGGUGGGG 19 13120
BCLllA-9766 + GGUGGGAGGAAAGGGUGGGG 20 13121
BCLllA-11064 + GGGUGGGAGGAAAGGGUGGGG 21 13122
BCLllA-11065 + GGGGUGGGAGGAAAGGGUGGGG 22 13123
BCLllA-11066 + AGGGGUGGGAGGAAAGGGUGGGG 23 13124
BCLllA-11067 + CAGGGGUGGGAGGAAAGGGUGGGG 24 13125
BCLllA-11068 + AGACACACAAAACAUGGG 18 13126
BCLllA-11069 + GAGACACACAAAACAUGGG 19 13127
BCLllA-11070 + AGAGACACACAAAACAUGGG 20 13128
BCLllA-11071 + CAGAGACACACAAAACAUGGG 21 13129
BCLllA-11072 + ACAGAGACACACAAAACAUGGG 22 13130
BCLllA-11073 + GACAGAGACACACAAAACAUGGG 23 13131
BCLllA-11074 + GGACAGAGACACACAAAACAUGGG 24 13132
BCLllA-11075 + GCAAUGGUUCCAGAUGGG 18 13133
BCLllA-11076 + GGCAAUGGUUCCAGAUGGG 19 13134
BCLllA-11077 + CGGCAAUGGUUCCAGAUGGG 20 13135
BCLllA-11078 + ACGGCAAUGGUUCCAGAUGGG 21 13136
BCLllA-11079 + CACGGCAAUGGUUCCAGAUGGG 22 13137
BCLllA-11080 + ACACGGCAAUGGUUCCAGAUGGG 23 13138
BCLllA-11081 + UACACGGCAAUGGUUCCAGAUGGG 24 13139
BCLllA-11082 + GUGGGAGGAAAGGGUGGG 18 13140
BCLllA-11083 + GGUGGGAGGAAAGGGUGGG 19 13141
BCLllA-9767 + GGGUGGGAGGAAAGGGUGGG 20 13142
BCLllA-11084 + GGGGUGGGAGGAAAGGGUGGG 21 13143
BCLllA-11085 + AGGGGUGGGAGGAAAGGGUGGG 22 13144
BCLllA-11086 + CAGGGGUGGGAGGAAAGGGUGGG 23 13145
BCLllA-11087 + GCAGGGGUGGGAGGAAAGGGUGGG 24 13146
BCLllA-11088 + AGGGGUGGCAGGGGUGGG 18 13147
BCLllA-11089 + AAGGGGUGGCAGGGGUGGG 19 13148
BCLllA-9768 + AAAGGGGUGGCAGGGGUGGG 20 13149
BCLllA-11090 + GAAAGGGGUGGCAGGGGUGGG 21 13150
BCLllA-11091 + AGAAAGGGGUGGCAGGGGUGGG 22 13151
BCLllA-11092 + AAGAAAGGGGUGGCAGGGGUGGG 23 13152
BCLllA-11093 + GAAGAAAGGGGUGGCAGGGGUGGG 24 13153
BCLllA-11094 + UGAACGUCAGGAGUCUGG 18 13154
BCLllA-11095 + UUGAACGUCAGGAGUCUGG 19 13155 BCLllA-11096 + CUUGAACGUCAGGAGUCUGG 20 13156
BCLllA-11097 + ACUUGAACGUCAGGAGUCUGG 21 13157
BCLllA-11098 + AACUUGAACGUCAGGAGUCUGG 22 13158
BCLllA-11099 + GAACUUGAACGUCAGGAGUCUGG 23 13159
BCLllA-11100 + CGAACUUGAACGUCAGGAGUCUGG 24 13160
BCLllA-11101 + GCCGCGGCGGUGGCGUGG 18 13161
BCLllA-11102 + CGCCGCGGCGGUGGCGUGG 19 13162
BCLllA-11103 + GCGCCGCGGCGGUGGCGUGG 20 13163
BCLllA-11104 + AGCGCCGCGGCGGUGGCGUGG 21 13164
BCLllA-11105 + GAGCGCCGCGGCGGUGGCGUGG 22 13165
BCLllA-11106 + CGAGCGCCGCGGCGGUGGCGUGG 23 13166
BCLllA-11107 + GCGAGCGCCGCGGCGGUGGCGUGG 24 13167
BCLllA-11108 + GGUGGGAGGAAAGGGUGG 18 13168
BCLllA-11109 + GGGUGGGAGGAAAGGGUGG 19 13169
BCLllA-9770 + GGGGUGGGAGGAAAGGGUGG 20 13170
BCLllA-11110 + AGGGGUGGGAGGAAAGGGUGG 21 13171
BCLllA-11111 + CAGGGGUGGGAGGAAAGGGUGG 22 13172
BCLllA-11112 + GCAGGGGUGGGAGGAAAGGGUGG 23 13173
BCLllA-11113 + GGCAGGGGUGGGAGGAAAGGGUGG 24 13174
BCLllA-11114 + GAGAGAAGAAAGGGGUGG 18 13175
BCLllA-11115 + GGAGAGAAGAAAGGGGUGG 19 13176
BCLllA-11116 + GGGAGAGAAGAAAGGGGUGG 20 13177
BCLllA-11117 + CGGGAGAGAAGAAAGGGGUGG 21 13178
BCLllA-11118 + CCGGGAGAGAAGAAAGGGGUGG 22 13179
BCLllA-11119 + GCCGGGAGAGAAGAAAGGGGUGG 23 13180
BCLllA-11120 + GGCCGGGAGAGAAGAAAGGGGUGG 24 13181
BCLllA-11121 + AAGGGGUGGCAGGGGUGG 18 13182
BCLllA-11122 + AAAGGGGUGGCAGGGGUGG 19 13183
BCLllA-11123 + GAAAGGGGUGGCAGGGGUGG 20 13184
BCLllA-11124 + AGAAAGGGGUGGCAGGGGUGG 21 13185
BCLllA-11125 + AAGAAAGGGGUGGCAGGGGUGG 22 13186
BCLllA-11126 + GAAGAAAGGGGUGGCAGGGGUGG 23 13187
BCLllA-11127 + AGAAGAAAGGGGUGGCAGGGGUGG 24 13188
BCLllA-11128 + AGGGAAGAUGAAUUGUGG 18 13189
BCLllA-11129 + CAGGGAAGAUGAAUUGUGG 19 13190
BCLllA-11130 + GCAGGGAAGAUGAAUUGUGG 20 13191
BCLllA-11131 + CGCAGGGAAGAUGAAUUGUGG 21 13192
BCLllA-11132 + GCGCAGGGAAGAUGAAUUGUGG 22 13193
BCLllA-11133 + GGCGCAGGGAAGAUGAAUUGUGG 23 13194
BCLllA-11134 + UGGCGCAGGGAAGAUGAAUUGUGG 24 13195
BCLllA-6524 + UGCUUGCGGCGAGACAUG 18 13196
BCLllA-6525 + UUGCUUGCGGCGAGACAUG 19 13197 BCLllA-6526 + CUUGCUUGCGGCGAGACAUG 20 13198
BCLllA-6527 + CCUUGCU UGCGGCGAGACAUG 21 13199
BCLllA-6528 + GCCUUGCUUGCGGCGAGACAUG 22 13200
BCLllA-6529 + UGCCU UGCUUGCGGCGAGACAUG 23 13201
BCLllA-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 13202
BCLllA-6544 + GCGAGACAUGGUGGGCUG 18 13203
BCLllA-6545 + GGCGAGACAUGGUGGGCUG 19 13204
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 13205
BCLllA-6546 + GCGGCGAGACAUGGUGGGCUG 21 13206
BCLllA-6547 + UGCGGCGAGACAUGGUGGGCUG 22 13207
BCLllA-6548 + U UGCGGCGAGACAUGGUGGGCUG 23 13208
BCLllA-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 13209
BCLllA-6550 + U UCCCGUUUGCU UAAGUG 18 13210
BCLllA-6551 + AUUCCCGU UUGCUUAAGUG 19 13211
BCLllA-6552 + AAUUCCCGUUUGCUUAAGUG 20 13212
BCLllA-6553 + GAAUUCCCGU UUGCUUAAGUG 21 13213
BCLllA-6554 + AGAAUUCCCGUUUGCU UAAGUG 22 13214
BCLllA-6555 + GAGAAUUCCCGUUUGCUUAAGUG 23 13215
BCLllA-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 13216
BCLllA-11135 + ACAAGCCAAUGGCCAGUG 18 13217
BCLllA-11136 + GACAAGCCAAUGGCCAGUG 19 13218
BCLllA-9773 + GGACAAGCCAAUGGCCAGUG 20 13219
BCLllA-11137 + AGGACAAGCCAAUGGCCAGUG 21 13220
BCLllA-11138 + CAGGACAAGCCAAUGGCCAGUG 22 13221
BCLllA-11139 + CCAGGACAAGCCAAUGGCCAGUG 23 13222
BCLllA-11140 + ACCAGGACAAGCCAAUGGCCAGUG 24 13223
BCLllA-11141 + UGCGGGGAGGGGGAGGUG 18 13224
BCLllA-11142 + GUGCGGGGAGGGGGAGGUG 19 13225
BCLllA-9774 + AGUGCGGGGAGGGGGAGGUG 20 13226
BCLllA-11143 + CAGUGCGGGGAGGGGGAGGUG 21 13227
BCLllA-11144 + CCAGUGCGGGGAGGGGGAGGUG 22 13228
BCLllA-11145 + GCCAGUGCGGGGAGGGGGAGGUG 23 13229
BCLllA-11146 + GGCCAGUGCGGGGAGGGGGAGGUG 24 13230
BCLllA-11147 + GGGUGGGAGGAAAGGGUG 18 13231
BCLllA-11148 + GGGGUGGGAGGAAAGGGUG 19 13232
BCLllA-9775 + AGGGGUGGGAGGAAAGGGUG 20 13233
BCLllA-11149 + CAGGGGUGGGAGGAAAGGGUG 21 13234
BCLllA-11150 + GCAGGGGUGGGAGGAAAGGGUG 22 13235
BCLllA-11151 + GGCAGGGGUGGGAGGAAAGGGUG 23 13236
BCLllA-11152 + UGGCAGGGGUGGGAGGAAAGGGUG 24 13237
BCLllA-11153 + CGCAGGGAAGAUGAAU UG 18 13238
BCLllA-11154 + GCGCAGGGAAGAUGAAUUG 19 13239 BCLllA-9777 + GGCGCAGGGAAGAUGAAUUG 20 13240
BCLllA-11155 + UGGCGCAGGGAAGAUGAAUUG 21 13241
BCLllA-11156 + AUGGCGCAGGGAAGAUGAAUUG 22 13242
BCLllA-11157 + GAUGGCGCAGGGAAGAUGAAUUG 23 13243
BCLllA-11158 + AGAUGGCGCAGGGAAGAUGAAUUG 24 13244
BCLllA-11159 + U UGACAUCCAAAAUAAAU 18 13245
BCLllA-11160 + U UUGACAUCCAAAAUAAAU 19 13246
BCLllA-11161 + U U UUGACAUCCAAAAUAAAU 20 13247
BCLllA-11162 + CU UUUGACAUCCAAAAUAAAU 21 13248
BCLllA-11163 + CCUUUUGACAUCCAAAAUAAAU 22 13249
BCLllA-11164 + GCCUU UUGACAUCCAAAAUAAAU 23 13250
BCLllA-11165 + UGCCU UUUGACAUCCAAAAUAAAU 24 13251
BCLllA-11166 + ACACCAAUGGACACACAU 18 13252
BCLllA-11167 + CACACCAAUGGACACACAU 19 13253
BCLllA-11168 + UCACACCAAUGGACACACAU 20 13254
BCLllA-11169 + CU CACACCAAUGGACACACAU 21 13255
BCLllA-11170 + GCUCACACCAAUGGACACACAU 22 13256
BCLllA-11171 + AGCUCACACCAAUGGACACACAU 23 13257
BCLllA-11172 + AAGCUCACACCAAUGGACACACAU 24 13258
BCLllA-11173 + CGACGGCUCGGUUCACAU 18 13259
BCLllA-11174 + ACGACGGCUCGGUUCACAU 19 13260
BCLllA-9582 + GACGACGGCUCGGUUCACAU 20 13261
BCLllA-11175 + GGACGACGGCUCGGUUCACAU 21 13262
BCLllA-11176 + CGGACGACGGCUCGGUUCACAU 22 13263
BCLllA-11177 + GCGGACGACGGCUCGGUUCACAU 23 13264
BCLllA-11178 + GGCGGACGACGGCUCGGUUCACAU 24 13265
BCLllA-11179 + UGCGGACGUGACGUCCCU 18 13266
BCLllA-11180 + GUGCGGACGUGACGUCCCU 19 13267
BCLllA-11181 + AGUGCGGACGUGACGUCCCU 20 13268
BCLllA-11182 + AAGUGCGGACGUGACGUCCCU 21 13269
BCLllA-11183 + CAAGUGCGGACGUGACGUCCCU 22 13270
BCLllA-11184 + UCAAGUGCGGACGUGACGUCCCU 23 13271
BCLllA-11185 + UUCAAGUGCGGACGUGACGUCCCU 24 13272
BCLllA-6618 + GGCGAGACAUGGUGGGCU 18 13273
BCLllA-6619 + CGGCGAGACAUGGUGGGCU 19 13274
BCLllA-6620 + GCGGCGAGACAUGGUGGGCU 20 13275
BCLllA-6621 + UGCGGCGAGACAUGGUGGGCU 21 13276
BCLllA-6622 + UUGCGGCGAGACAUGGUGGGCU 22 13277
BCLllA-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 13278
BCLllA-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 13279
BCLllA-11186 + CUCU UUUACCUCGACUCU 18 13280
BCLllA-11187 + UCUCUUUUACCUCGACUCU 19 13281 BCLllA-9585 + AUCUCUUU UACCUCGACUCU 20 13282
BCLllA-11188 + UAUCUCUU UUACCUCGACUCU 21 13283
BCLllA-11189 + UUAUCUCU UUUACCUCGACUCU 22 13284
BCLllA-11190 + UUUAUCUCUUUUACCUCGACUCU 23 13285
BCLllA-11191 + CUUUAUCUCUUUUACCUCGACUCU 24 13286
BCLllA-11192 + U G AG CU G CAAG U U CAAG U 18 13287
BCLllA-11193 + CUGAGCUGCAAGUUCAAGU 19 13288
BCLllA-11194 + CCUGAGCUGCAAGUUCAAGU 20 13289
BCLllA-11195 + CCCUGAGCUGCAAGUUCAAGU 21 13290
BCLllA-11196 + CCCCUGAGCUGCAAGUUCAAGU 22 13291
BCLllA-11197 + CCCCCUGAGCUGCAAGUUCAAGU 23 13292
BCLllA-11198 + CCCCCCUGAGCUGCAAGUUCAAGU 24 13293
BCLllA-11199 + GACAAGCCAAUGGCCAGU 18 13294
BCLllA-11200 + GGACAAGCCAAUGGCCAGU 19 13295
BCLllA-11201 + AGGACAAGCCAAUGGCCAGU 20 13296
BCLllA-11202 + CAGGACAAGCCAAUGGCCAGU 21 13297
BCLllA-11203 + CCAGGACAAGCCAAUGGCCAGU 22 13298
BCLllA-11204 + ACCAGGACAAGCCAAUGGCCAGU 23 13299
BCLllA-11205 + GACCAGGACAAGCCAAUGGCCAGU 24 13300
BCLllA-11206 + CCCUGCGAACUUGAACGU 18 13301
BCLllA-11207 + UCCCUGCGAACUUGAACGU 19 13302
BCLllA-11208 + GUCCCUGCGAACUUGAACGU 20 13303
BCLllA-11209 + CGUCCCUGCGAACUUGAACGU 21 13304
BCLllA-11210 + ACGUCCCUGCGAACUUGAACGU 22 13305
BCLllA-11211 + GACGUCCCUGCGAACU UGAACGU 23 13306
BCLllA-11212 + UGACGUCCCUGCGAACU UGAACGU 24 13307
BCLllA-11213 + GUGCGGGGAGGGGGAGGU 18 13308
BCLllA-11214 + AGUGCGGGGAGGGGGAGGU 19 13309
BCLllA-11215 + CAGUGCGGGGAGGGGGAGGU 20 13310
BCLllA-11216 + CCAGUGCGGGGAGGGGGAGGU 21 13311
BCLllA-11217 + GCCAGUGCGGGGAGGGGGAGGU 22 13312
BCLllA-11218 + GGCCAGUGCGGGGAGGGGGAGGU 23 13313
BCLllA-11219 + UGGCCAGUGCGGGGAGGGGGAGGU 24 13314
BCLllA-11220 + GGGGUGGGAGGAAAGGGU 18 13315
BCLllA-11221 + AGGGGUGGGAGGAAAGGGU 19 13316
BCLllA-9784 + CAGGGGUGGGAGGAAAGGGU 20 13317
BCLllA-11222 + GCAGGGGUGGGAGGAAAGGGU 21 13318
BCLllA-11223 + GGCAGGGGUGGGAGGAAAGGGU 22 13319
BCLllA-11224 + UGGCAGGGGUGGGAGGAAAGGGU 23 13320
BCLllA-11225 + GUGGCAGGGGUGGGAGGAAAGGGU 24 13321
BCLllA-11226 + ACAUCGGGAGAGCCGGGU 18 13322
BCLllA-11227 + CACAUCGGGAGAGCCGGGU 19 13323 BCLllA-11228 + UCACAUCGGGAGAGCCGGGU 20 13324
BCLllA-11229 + UUCACAUCGGGAGAGCCGGGU 21 13325
BCLllA-11230 + GUUCACAUCGGGAGAGCCGGGU 22 13326
BCLllA-11231 + GGUUCACAUCGGGAGAGCCGGGU 23 13327
BCLllA-11232 + CGGU UCACAUCGGGAGAGCCGGGU 24 13328
BCLllA-11233 + GAAAGGGGUGGCAGGGGU 18 13329
BCLllA-11234 + AGAAAGGGGUGGCAGGGGU 19 13330
BCLllA-9785 + AAGAAAGGGGUGGCAGGGGU 20 13331
BCLllA-11235 + GAAGAAAGGGGUGGCAGGGGU 21 13332
BCLllA-11236 + AGAAGAAAGGGGUGGCAGGGGU 22 13333
BCLllA-11237 + GAGAAGAAAGGGGUGGCAGGGGU 23 13334
BCLllA-11238 + AGAGAAGAAAGGGGUGGCAGGGGU 24 13335
BCLllA-11239 + GCAGGGAAGAUGAAUUGU 18 13336
BCLllA-11240 + CGCAGGGAAGAUGAAU UGU 19 13337
BCLllA-9786 + GCGCAGGGAAGAUGAAUUGU 20 13338
BCLllA-11241 + GGCGCAGGGAAGAUGAAUUGU 21 13339
BCLllA-11242 + UGGCGCAGGGAAGAUGAAUUGU 22 13340
BCLllA-11243 + AUGGCGCAGGGAAGAUGAAUUGU 23 13341
BCLllA-11244 + GAUGGCGCAGGGAAGAUGAAUUGU 24 13342
BCLllA-11245 + GCGCAGGGAAGAUGAAUU 18 13343
BCLllA-11246 + GGCGCAGGGAAGAUGAAUU 19 13344
BCLllA-11247 + UGGCGCAGGGAAGAUGAAUU 20 13345
BCLllA-11248 + AUGGCGCAGGGAAGAUGAAUU 21 13346
BCLllA-11249 + GAUGGCGCAGGGAAGAUGAAUU 22 13347
BCLllA-11250 + AGAUGGCGCAGGGAAGAUGAAUU 23 13348
BCLllA-11251 + AAGAUGGCGCAGGGAAGAUGAAUU 24 13349
BCLllA-11252 - GCAGGACUAGAAGCAAAA 18 13350
BCLllA-11253 - CGCAGGACUAGAAGCAAAA 19 13351
BCLllA-11254 - GCGCAGGACUAGAAG C A A A A 20 13352
BCLllA-11255 - CGCGCAGGACUAGAAGCAAAA 21 13353
BCLllA-11256 - G CG CG CAG G AC U AG AAG CAAAA 22 13354
BCLllA-11257 - AGCGCGCAGGACUAGAAG CAAAA 23 13355
BCLllA-11258 - GAGCGCGCAGGACUAGAAGCAAAA 24 13356
BCLllA-6678 - CCCCAGCACUUAAGCAAA 18 13357
BCLllA-6679 - ACCCCAGCACUUAAGCAAA 19 13358
BCLllA-5443 - AACCCCAGCACU UAAGCAAA 20 13359
BCLllA-6680 - AAACCCCAGCACUUAAGCAAA 21 13360
BCLllA-6681 - CAAACCCCAGCACU UAAGCAAA 22 13361
BCLllA-6682 - GCAAACCCCAGCACUUAAGCAAA 23 13362
BCLllA-6683 - GGCAAACCCCAGCACUUAAGCAAA 24 13363
BCLllA-11259 - CG AG G U A A A AG AG A U AAA 18 13364
BCLllA-11260 - U CG AG G U A A A AG AG A U AAA 19 13365 BCLllA-9693 - G U CG AGG U AAAAG AG AU AAA 20 13366
BCLllA-11261 - AGUCGAGGUAAAAGAGAUAAA 21 13367
BCLllA-11262 - GAGUCGAGGUAAAAGAGAUAAA 22 13368
BCLllA-11263 - AG AG U CG AGG U AAAAG AG AU AAA 23 13369
BCLllA-11264 - GAGAGUCGAGGUAAAAGAGAUAAA 24 13370
BCLllA-6698 - ACCCCAGCACUUAAGCAA 18 13371
BCLllA-6699 - AACCCCAGCACUUAAGCAA 19 13372
BCLllA-6700 - AAACCCCAGCACUUAAGCAA 20 13373
BCLllA-6701 - CAAACCCCAGCACUUAAGCAA 21 13374
BCLllA-6702 - GCAAACCCCAGCACUUAAGCAA 22 13375
BCLllA-6703 - GGCAAACCCCAGCACUUAAGCAA 23 13376
BCLllA-6704 - AGGCAAACCCCAGCACUUAAGCAA 24 13377
BCLllA-11265 - CGGCUCUCCCGAUGUGAA 18 13378
BCLllA-11266 - CCGGCUCUCCCGAUGUGAA 19 13379
BCLllA-11267 - CCCGGCUCUCCCGAUGUGAA 20 13380
BCLllA-11268 - ACCCGGCUCUCCCGAUGUGAA 21 13381
BCLllA-11269 - AACCCGGCUCUCCCGAUGUGAA 22 13382
BCLllA-11270 - UAACCCGGCUCUCCCGAUGUGAA 23 13383
BCLllA-11271 - CUAACCCGGCUCUCCCGAUGUGAA 24 13384
BCLllA-11272 - U CG AGG U AAAAG AG AU AA 18 13385
BCLllA-11273 - GUCGAGGU AAAAG AG A U A A 19 13386
BCLllA-9699 - AG U CG AGG U AAAAG AG AU AA 20 13387
BCLllA-11274 - G AG U CG AGG U AAAAG AG AU AA 21 13388
BCLllA-11275 - AGAGUCGAGGUAAAAGAGAUAA 22 13389
BCLllA-11276 - GAG AG U CG AGG U AAAAG AG AU AA 23 13390
BCLllA-11277 - CG AG AG U CG AGG U AAAAG AG AU AA 24 13391
BCLllA-11278 - CUCCGAGAGUCGAGGUAA 18 13392
BCLllA-11279 - CCUCCGAGAGUCGAGGUAA 19 13393
BCLllA-11280 - ACCUCCGAGAGUCGAGGUAA 20 13394
BCLllA-11281 - AACCUCCGAGAGUCGAGGUAA 21 13395
BCLllA-11282 - AAACCUCCGAGAGUCGAGGUAA 22 13396
BCLllA-11283 - AAAACCUCCGAGAGUCGAGGUAA 23 13397
BCLllA-11284 - AAAAACCUCCGAGAGUCGAGGUAA 24 13398
BCLllA-11285 - ACUUGAACUUGCAGCUCA 18 13399
BCLllA-11286 - CACUUGAACUUGCAGCUCA 19 13400
BCLllA-9705 - GCACUUGAACUUGCAGCUCA 20 13401
BCLllA-11287 - CGCACUUGAACUUGCAGCUCA 21 13402
BCLllA-11288 - CCGCACUUGAACUUGCAGCUCA 22 13403
BCLllA-11289 - UCCGCACUUGAACUUGCAGCUCA 23 13404
BCLllA-11290 - GUCCGCACUUGAACUUGCAGCUCA 24 13405
BCLllA-11291 - GCAAAAGCGAGGGGGAGA 18 13406
BCLllA-11292 - AGCAAAAGCGAGGGGGAGA 19 13407 BCLllA-4934 - A AG C A A A AG CGAGGGGGAGA 20 13408
BCLllA-11293 - G A AG C A A A AG CGAGGGGGAGA 21 13409
BCLllA-11294 - AGAAGCAAAAGCGAGGGGGAGA 22 13410
BCLllA-11295 - UAGAAGCAAAAGCGAGGGGGAGA 23 13411
BCLllA-11296 - CUAGAAGCAAAAGCGAGGGGGAGA 24 13412
BCLllA-11297 - GACUAGAAGCAAAAGCGA 18 13413
BCLllA-11298 - GGACUAGAAGCAAAAGCGA 19 13414
BCLllA-9710 - AGGACUAGAAGCAAAAGCGA 20 13415
BCLllA-11299 - CAGGACUAGAAGCAAAAGCGA 21 13416
BCLllA-11300 - GCAGGACUAGAAG C A A A AG CG A 22 13417
BCLllA-11301 - CGCAGGACUAGAAGCAAAAGCGA 23 13418
BCLllA-11302 - GCGCAGGACUAGAAGCAAAAGCGA 24 13419
BCLllA-11303 - AAGCAAAAGCGAGGGGGA 18 13420
BCLllA-11304 - G A AG C A A A AG CGAGGGGGA 19 13421
BCLllA-4972 - AGAAGCAAAAGCGAGGGGGA 20 13422
BCLllA-11305 - UAGAAGCAAAAGCGAGGGGGA 21 13423
BCLllA-11306 - CUAGAAGCAAAAGCGAGGGGGA 22 13424
BCLllA-11307 - ACUAGAAGCAAAAGCGAGGGGGA 23 13425
BCLllA-11308 - GACUAGAAGCAAAAGCGAGGGGGA 24 13426
BCLllA-11309 - G U CG AGG U AAAAG AG AU A 18 13427
BCLllA-11310 - AGUCGAGGUAAAAGAGAUA 19 13428
BCLllA-11311 - GAGUCGAGGUAAAAGAGAUA 20 13429
BCLllA-11312 - AG AG U CG AGG U AAAAG AG AU A 21 13430
BCLllA-11313 - GAGAGUCGAGGUAAAAGAGAUA 22 13431
BCLllA-11314 - CGAGAGUCGAGGUAAAAGAGAUA 23 13432
BCLllA-11315 - CCG AG AG U CG AGG U AAAAG AG AU A 24 13433
BCLllA-11316 - GGGACGUCACGUCCGCAC 18 13434
BCLllA-11317 - AGGGACGUCACGUCCGCAC 19 13435
BCLllA-11318 - CAGGGACGUCACGUCCGCAC 20 13436
BCLllA-11319 - GCAGGGACGUCACGUCCGCAC 21 13437
BCLllA-11320 - CGCAGGGACGUCACGUCCGCAC 22 13438
BCLllA-11321 - U CG CAGGGACG U CACG U CCG CAC 23 13439
BCLllA-11322 - U U CG CAGGGACG U CACG U CCG CAC 24 13440
BCLllA-11323 - AUAAUUAUUAAUAAUCAC 18 13441
BCLllA-11324 - AAUAAUUAUUAAUAAUCAC 19 13442
BCLllA-11325 - UAAUAAUUAUUAAUAAUCAC 20 13443
BCLllA-11326 - AUAAUAAUUAUUAAUAAUCAC 21 13444
BCLllA-11327 - AAUAAUAAUUAUUAAUAAUCAC 22 13445
BCLllA-11328 - UAAUAAUAAUUAUUAAUAAUCAC 23 13446
BCLllA-11329 - GUAAUAAUAAUUAUUAAUAAUCAC 24 13447
BCLllA-11330 - CAUUUUUAAAUUUUUCAC 18 13448
BCLllA-11331 - GCAUUUUUAAAUUUUUCAC 19 13449 BCLllA-11332 - UGCAUUUUUAAAUUUUUCAC 20 13450
BCLllA-11333 - AUGCAUUUUUAAAUUUUUCAC 21 13451
BCLllA-11334 - CAUGCAUUUUUAAAUUUUUCAC 22 13452
BCLllA-11335 - GCAUGCAUUUUUAAAUUUUUCAC 23 13453
BCLllA-11336 - UGCAUGCAUUUUUAAAUUUUUCAC 24 13454
BCLllA-11337 - CACGAGAGCGCGCAGGAC 18 13455
BCLllA-11338 - UCACGAGAGCGCGCAGGAC 19 13456
BCLllA-11339 - AUCACGAGAGCGCGCAGGAC 20 13457
BCLllA-11340 - AAUCACGAGAGCGCGCAGGAC 21 13458
BCLllA-11341 - U AAU CACG AG AG CG CG CAGG AC 22 13459
BCLllA-11342 - AUAAUCACGAGAGCGCGCAGGAC 23 13460
BCLllA-11343 - AAUAAUCACGAGAGCGCGCAGGAC 24 13461
BCLllA-11344 - UCGGCCCGCCCCUCCCCC 18 13462
BCLllA-11345 - CUCGGCCCGCCCCUCCCCC 19 13463
BCLllA-9716 - CCUCGGCCCGCCCCUCCCCC 20 13464
BCLllA-11346 - CCCUCGGCCCGCCCCUCCCCC 21 13465
BCLllA-11347 - CCCCUCGGCCCGCCCCUCCCCC 22 13466
BCLllA-11348 - UCCCCUCGGCCCGCCCCUCCCCC 23 13467
BCLllA-11349 - CUCCCCUCGGCCCGCCCCUCCCCC 24 13468
BCLllA-11350 - CUCGGCCCGCCCCUCCCC 18 13469
BCLllA-11351 - CCUCGGCCCGCCCCUCCCC 19 13470
BCLllA-9717 - CCCUCGGCCCGCCCCUCCCC 20 13471
BCLllA-11352 - CCCCUCGGCCCGCCCCUCCCC 21 13472
BCLllA-11353 - UCCCCUCGGCCCGCCCCUCCCC 22 13473
BCLllA-11354 - CUCCCCUCGGCCCGCCCCUCCCC 23 13474
BCLllA-11355 - CCUCCCCUCGGCCCGCCCCUCCCC 24 13475
BCLllA-11356 - CCUCGGCCCGCCCCUCCC 18 13476
BCLllA-11357 - CCCUCGGCCCGCCCCUCCC 19 13477
BCLllA-11358 - CCCCUCGGCCCGCCCCUCCC 20 13478
BCLllA-11359 - UCCCCUCGGCCCGCCCCUCCC 21 13479
BCLllA-11360 - CUCCCCUCGGCCCGCCCCUCCC 22 13480
BCLllA-11361 - CCUCCCCUCGGCCCGCCCCUCCC 23 13481
BCLllA-11362 - CCCUCCCCUCGGCCCGCCCCUCCC 24 13482
BCLllA-11363 - GGGCCGCGUCUGGCGUCC 18 13483
BCLllA-11364 - GGGGCCGCGUCUGGCGUCC 19 13484
BCLllA-11365 - GGGGGCCGCGUCUGGCGUCC 20 13485
BCLllA-11366 - CGGGGGCCGCGUCUGGCGUCC 21 13486
BCLllA-11367 - CCGGGGGCCGCGUCUGGCGUCC 22 13487
BCLllA-11368 - CCCGGGGGCCGCGUCUGGCGUCC 23 13488
BCLllA-11369 - CCCCGGGGGCCGCGUCUGGCGUCC 24 13489
BCLllA-11370 - AG G AC U AG AAG CAAAAG C 18 13490
BCLllA-11371 - C AG G AC U AG AAG CAAAAG C 19 13491 BCLllA-11372 - GCAGGACUAGAAGCAAAAGC 20 13492
BCLllA-11373 - CGCAGGACUAGAAGCAAAAGC 21 13493
BCLllA-11374 - GCGCAGGACUAGAAGCAAAAGC 22 13494
BCLllA-11375 - CGCGCAGGACUAGAAG CAAAAG C 23 13495
BCLllA-11376 - G CG CG CAG G AC U AG AAG CAAAAG C 24 13496
BCLllA-11377 - CCUGACGUUCAAGUUCGC 18 13497
BCLllA-11378 - UCCUGACGUUCAAGUUCGC 19 13498
BCLllA-9566 - CUCCUGACGUUCAAGUUCGC 20 13499
BCLllA-11379 - ACUCCUGACGUUCAAGUUCGC 21 13500
BCLllA-11380 - GACUCCUGACGUUCAAGUUCGC 22 13501
BCLllA-11381 - AGACUCCUGACGUUCAAGUUCGC 23 13502
BCLllA-11382 - CAGACUCCUGACGUUCAAGUUCGC 24 13503
BCLllA-11383 - UAAUAAUUAUUAAUAAUC 18 13504
BCLllA-11384 - AUAAUAAUUAUUAAUAAUC 19 13505
BCLllA-11385 - AAUAAUAAUUAUUAAUAAUC 20 13506
BCLllA-11386 - UAAUAAUAAUUAUUAAUAAUC 21 13507
BCLllA-11387 - GUAAUAAUAAUUAUUAAUAAUC 22 13508
BCLllA-11388 - AGUAAUAAUAAUUAUUAAUAAUC 23 13509
BCLllA-11389 - UAGUAAUAAUAAUUAUUAAUAAUC 24 13510
BCLllA-11390 - AAAAACCCUCAUCCCAUC 18 13511
BCLllA-11391 - AAAAAACCCUCAUCCCAUC 19 13512
BCLllA-9730 - GAAAAAACCCUCAUCCCAUC 20 13513
BCLllA-11392 - GGAAAAAACCCUCAUCCCAUC 21 13514
BCLllA-11393 - GGGAAAAAACCCUCAUCCCAUC 22 13515
BCLllA-11394 - GGGGAAAAAACCCUCAUCCCAUC 23 13516
BCLllA-11395 - GGGGGAAAAAACCCUCAUCCCAUC 24 13517
BCLllA-11396 - CACUUGAACUUGCAGCUC 18 13518
BCLllA-11397 - GCACUUGAACUUGCAGCUC 19 13519
BCLllA-9569 - CGCACUUGAACUUGCAGCUC 20 13520
BCLllA-11398 - CCGCACUUGAACUUGCAGCUC 21 13521
BCLllA-11399 - UCCGCACUUGAACUUGCAGCUC 22 13522
BCLllA-11400 - GUCCGCACUUGAACUUGCAGCUC 23 13523
BCLllA-11401 - CGUCCGCACUUGAACUUGCAGCUC 24 13524
BCLllA-11402 - UGCAUUUUUAAAUUUUUC 18 13525
BCLllA-11403 - AUGCAUUUUUAAAUUUUUC 19 13526
BCLllA-11404 - CAUGCAUUUUUAAAUUUUUC 20 13527
BCLllA-11405 - GCAUGCAUUUUUAAAUUUUUC 21 13528
BCLllA-11406 - UGCAUGCAUUUUUAAAUUUUUC 22 13529
BCLllA-11407 - GUGCAUGCAUUUUUAAAUUUUUC 23 13530
BCLllA-11408 - UGUGCAUGCAUUUUUAAAUUUUUC 24 13531
BCLllA-11409 - G AG G U A A A AG AG A U A A AG 18 13532
BCLllA-11410 - CG AG G U A A A AG AG A U A A AG 19 13533 BCLllA-9571 - U CG AG G U AAAAG AG A U AAAG 20 13534
BCLllA-11411 - GUCGAGGU AAAAG AG A U AAAG 21 13535
BCLllA-11412 - AG U CG AGG U AAAAG AG AU AAAG 22 13536
BCLllA-11413 - GAGUCGAGGUAAAAGAGAUAAAG 23 13537
BCLllA-11414 - AG AG U CG AGG U AAAAG AG AU AAAG 24 13538
BCLllA-11415 - CUUGAACUUGCAGCUCAG 18 13539
BCLllA-11416 - ACUUGAACUUGCAGCUCAG 19 13540
BCLllA-9738 - CACUUGAACUUGCAGCUCAG 20 13541
BCLllA-11417 - GCACUUGAACUUGCAGCUCAG 21 13542
BCLllA-11418 - CGCACUUGAACUUGCAGCUCAG 22 13543
BCLllA-11419 - CCGCACUUGAACUUGCAGCUCAG 23 13544
BCLllA-11420 - UCCGCACUUGAACUUGCAGCUCAG 24 13545
BCLllA-11421 - GAGAAAAACCUCCGAGAG 18 13546
BCLllA-11422 - CGAGAAAAACCUCCGAGAG 19 13547
BCLllA-11423 - ACGAGAAAAACCUCCGAGAG 20 13548
BCLllA-11424 - CACGAGAAAAACCUCCGAGAG 21 13549
BCLllA-11425 - UCACGAGAAAAACCUCCGAGAG 22 13550
BCLllA-11426 - UUCACGAGAAAAACCUCCGAGAG 23 13551
BCLllA-11427 - UUUCACGAGAAAAACCUCCGAGAG 24 13552
BCLllA-11428 - ACU AG AAG CAAAAG CG AG 18 13553
BCLllA-11429 - GACUAGAAGCAAAAGCGAG 19 13554
BCLllA-9739 - GGACUAGAAGCAAAAGCGAG 20 13555
BCLllA-11430 - AGGACUAGAAGCAAAAGCGAG 21 13556
BCLllA-11431 - CAGGACUAGAAGCAAAAGCGAG 22 13557
BCLllA-11432 - GCAGGACUAGAAGCAAAAGCGAG 23 13558
BCLllA-11433 - CGCAGGACUAGAAGCAAAAGCGAG 24 13559
BCLllA-11434 - CGCGUGUGUGGGGGGGAG 18 13560
BCLllA-11435 - CCGCGUGUGUGGGGGGGAG 19 13561
BCLllA-11436 - UCCGCGUGUGUGGGGGGGAG 20 13562
BCLllA-11437 - GUCCGCGUGUGUGGGGGGGAG 21 13563
BCLllA-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 13564
BCLllA-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 13565
BCLllA-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 13566
BCLllA-11441 - GGCCGCGUCUGGCGUCCG 18 13567
BCLllA-11442 - GGGCCGCGUCUGGCGUCCG 19 13568
BCLllA-9574 - GGGGCCGCGUCUGGCGUCCG 20 13569
BCLllA-11443 - GGGGGCCGCGUCUGGCGUCCG 21 13570
BCLllA-11444 - CGGGGGCCGCGUCUGGCGUCCG 22 13571
BCLllA-11445 - CCGGGGGCCGCGUCUGGCGUCCG 23 13572
BCLllA-11446 - CCCGGGGGCCGCGUCUGGCGUCCG 24 13573
BCLllA-11447 - GGACUAGAAGCAAAAGCG 18 13574
BCLllA-11448 - AG G AC U AG AAG CAAAAG CG 19 13575 BCLllA-9748 - CAGGACUAGAAGCAAAAGCG 20 13576
BCLllA-11449 - G C AG G AC U AG AAG CAAA AG CG 21 13577
BCLllA-11450 - CGCAGGACUAGAAGCAAAAGCG 22 13578
BCLllA-11451 - GCGCAGGACUAGAAGCAAAAGCG 23 13579
BCLllA-11452 - CGCGCAGGACUAGAAGCAAAAGCG 24 13580
BCLllA-11453 - AAUAAUCACGAGAGCGCG 18 13581
BCLllA-11454 - UAAUAAUCACGAGAGCGCG 19 13582
BCLllA-11455 - UUAAUAAUCACGAGAGCGCG 20 13583
BCLllA-11456 - AUUAAUAAUCACGAGAGCGCG 21 13584
BCLllA-11457 - UAUUAAUAAUCACGAGAGCGCG 22 13585
BCLllA-11458 - UUAUUAAUAAUCACGAGAGCGCG 23 13586
BCLllA-11459 - AUUAUUAAUAAUCACGAGAGCGCG 24 13587
BCLllA-11460 - UCCUGACGUUCAAGUUCG 18 13588
BCLllA-11461 - CUCCUGACGUUCAAGUUCG 19 13589
BCLllA-11462 - ACUCCUGACGUUCAAGUUCG 20 13590
BCLllA-11463 - GACUCCUGACGUUCAAGUUCG 21 13591
BCLllA-11464 - AGACUCCUGACGUUCAAGUUCG 22 13592
BCLllA-11465 - CAGACUCCUGACGUUCAAGUUCG 23 13593
BCLllA-11466 - CCAGACUCCUGACGUUCAAGUUCG 24 13594
BCLllA-11467 - AGG U AAAAG AG AU AAAGG 18 13595
BCLllA-11468 - G AGG U AAAAG AG AU AAAGG 19 13596
BCLllA-9753 - CGAGGUAAAAGAGAU AAAGG 20 13597
BCLllA-11469 - U CG AGG U AAAAG AG AU AAAGG 21 13598
BCLllA-11470 - GUCGAGGUAAAAGAGAUAAAGG 22 13599
BCLllA-11471 - AG U CG AGG U AAAAG AG AU AAAGG 23 13600
BCLllA-11472 - G AG U CG AGG U AAAAG AG AU AAAGG 24 13601
BCLllA-11473 - CUAGAAGCAAAAGCGAGG 18 13602
BCLllA-11474 - ACUAGAAGCAAAAGCGAGG 19 13603
BCLllA-9755 - GACUAGAAGCAAAAGCGAGG 20 13604
BCLllA-11475 - GGACUAGAAGCAAAAGCGAGG 21 13605
BCLllA-11476 - AGGACUAGAAGCAAAAGCGAGG 22 13606
BCLllA-11477 - CAGGACUAGAAGCAAAAGCGAGG 23 13607
BCLllA-11478 - GCAGGACUAGAAGCAAAAGCGAGG 24 13608
BCLllA-11479 - AGAAGCAAAAGCGAGGGG 18 13609
BCLllA-11480 - U AG A AG CAAA AG CG AG G G G 19 13610
BCLllA-11481 - CUAGAAGCAAAAGCGAGGGG 20 13611
BCLllA-11482 - ACUAGAAGCAAAAGCGAGGGG 21 13612
BCLllA-11483 - GACUAGAAG CAAA AG CG AG G G G 22 13613
BCLllA-11484 - GGACUAGAAGCAAAAGCGAGGGG 23 13614
BCLllA-11485 - AGGACUAGAAGCAAAAGCGAGGGG 24 13615
BCLllA-11486 - GAGUCCGCGUGUGUGGGG 18 13616
BCLllA-11487 - AGAGUCCGCGUGUGUGGGG 19 13617 BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 13618
BCLllA-11488 - UUAGAGUCCGCGUGUGUGGGG 21 13619
BCLllA-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 13620
BCLllA-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 13621
BCLllA-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 13622
BCLllA-11492 - AGAGUCCGCGUGUGUGGG 18 13623
BCLllA-11493 - UAGAGUCCGCGUGUGUGGG 19 13624
BCLllA-9769 - UUAGAGUCCGCGUGUGUGGG 20 13625
BCLllA-11494 - UUUAGAGUCCGCGUGUGUGGG 21 13626
BCLllA-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 13627
BCLllA-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 13628
BCLllA-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 13629
BCLllA-11498 - UAGAGUCCGCGUGUGUGG 18 13630
BCLllA-11499 - UUAGAGUCCGCGUGUGUGG 19 13631
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 13632
BCLllA-11500 - UUUUAGAGUCCGCGUGUGUGG 21 13633
BCLllA-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 13634
BCLllA-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 13635
BCLllA-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 13636
BCLllA-11504 - CGCUCGCUGCGGCCACUG 18 13637
BCLllA-11505 - GCGCUCGCUGCGGCCACUG 19 13638
BCLllA-11506 - GGCGCUCGCUGCGGCCACUG 20 13639
BCLllA-11507 - CGGCGCUCGCUGCGGCCACUG 21 13640
BCLllA-11508 - GCGGCGCUCGCUGCGGCCACUG 22 13641
BCLllA-11509 - CGCGGCGCUCGCUGCGGCCACUG 23 13642
BCLllA-11510 - CCGCGGCGCUCGCUGCGGCCACUG 24 13643
BCLllA-11511 - GGAUGUCAAAAGGCACUG 18 13644
BCLllA-11512 - UGGAUGUCAAAAGGCACUG 19 13645
BCLllA-11513 - UUGGAUGUCAAAAGGCACUG 20 13646
BCLllA-11514 - UUUGGAUGUCAAAAGGCACUG 21 13647
BCLllA-11515 - UUUUGGAUGUCAAAAGGCACUG 22 13648
BCLllA-11516 - AUUUUGGAUGUCAAAAGGCACUG 23 13649
BCLllA-11517 - UAUUUUGGAUGUCAAAAGGCACUG 24 13650
BCLllA-11518 - UUUUAGAGUCCGCGUGUG 18 13651
BCLllA-11519 - AUUUUAGAGUCCGCGUGUG 19 13652
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 13653
BCLllA-11520 - UCAUUUUAGAGUCCGCGUGUG 21 13654
BCLllA-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 13655
BCLllA-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 13656
BCLllA-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 13657
BCLllA-11524 - UUAGAGUCCGCGUGUGUG 18 13658
BCLllA-11525 - UUUAGAGUCCGCGUGUGUG 19 13659 BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 13660
BCLllA-11526 - AUUUUAGAGUCCGCGUGUGUG 21 13661
BCLllA-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 13662
BCLllA-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 13663
BCLllA-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 13664
BCLllA-11530 - AAAAAACCCUCAUCCCAU 18 13665
BCLllA-11531 - GAAAAAACCCUCAUCCCAU 19 13666
BCLllA-11532 - GGAAAAAACCCUCAUCCCAU 20 13667
BCLllA-11533 - GGGAAAAAACCCUCAUCCCAU 21 13668
BCLllA-11534 - GGGGAAAAAACCCUCAUCCCAU 22 13669
BCLllA-11535 - GGGGGAAAAAACCCUCAUCCCAU 23 13670
BCLllA-11536 - AGGGGGAAAAAACCCUCAUCCCAU 24 13671
BCLllA-11537 - UAACCCGGCUCUCCCGAU 18 13672
BCLllA-11538 - CUAACCCGGCUCUCCCGAU 19 13673
BCLllA-11539 - UCUAACCCGGCUCUCCCGAU 20 13674
BCLllA-11540 - UUCUAACCCGGCUCUCCCGAU 21 13675
BCLllA-11541 - UUUCUAACCCGGCUCUCCCGAU 22 13676
BCLllA-11542 - CUUUCUAACCCGGCUCUCCCGAU 23 13677
BCLllA-11543 - UCUUUCUAACCCGGCUCUCCCGAU 24 13678
BCLllA-11544 - U U U U CACG AG AAAAACCU 18 13679
BCLllA-11545 - U U U U U CACG AG AAAAACCU 19 13680
BCLllA-11546 - AU U U U U CACG AG AAAAACCU 20 13681
BCLllA-11547 - AAU U U U U CACG AG AAAAACCU 21 13682
BCLllA-11548 - AAAU U U U U CACG AG AAAAACCU 22 13683
BCLllA-11549 - U AAAU U U U U CACG AG AAAAACCU 23 13684
BCLllA-11550 - U U AAAU U U U U CACG AG AAAAACCU 24 13685
BCLllA-11551 - GCACUUGAACUUGCAGCU 18 13686
BCLllA-11552 - CGCACUUGAACUUGCAGCU 19 13687
BCLllA-11553 - CCGCACUUGAACUUGCAGCU 20 13688
BCLllA-11554 - UCCGCACUUGAACUUGCAGCU 21 13689
BCLllA-11555 - GUCCGCACUUGAACUUGCAGCU 22 13690
BCLllA-11556 - CGUCCGCACUUGAACUUGCAGCU 23 13691
BCLllA-11557 - ACGUCCGCACUUGAACUUGCAGCU 24 13692
BCLllA-11558 - CUGAUGAAGAUAUUUUCU 18 13693
BCLllA-11559 - ACUGAUGAAGAUAUUUUCU 19 13694
BCLllA-11560 - CACUGAUGAAGAUAUUUUCU 20 13695
BCLllA-11561 - GCACUGAUGAAGAUAUUUUCU 21 13696
BCLllA-11562 - GGCACUGAUGAAGAUAUUUUCU 22 13697
BCLllA-11563 - AGGCACUGAUGAAGAUAUUUUCU 23 13698
BCLllA-11564 - AAGGCACUGAUGAAGAUAUUUUCU 24 13699
BCLllA-11565 - UGAUGUGUGUCCAUUGGU 18 13700
BCLllA-11566 - CUGAUGUGUGUCCAUUGGU 19 13701 BCLllA-11567 - CCUGAUGUGUGUCCAU UGGU 20 13702
BCLllA-11568 - CCCUGAUGUGUGUCCAUUGGU 21 13703
BCLllA-11569 - CCCCUGAUGUGUGUCCAUUGGU 22 13704
BCLllA-11570 - GCCCCUGAUGUGUGUCCAUUGGU 23 13705
BCLllA-11571 - AGCCCCUGAUGUGUGUCCAUUGGU 24 13706
BCLllA-11572 - AUUUUAGAGUCCGCGUGU 18 13707
BCLllA-11573 - CAU UUUAGAGUCCGCGUGU 19 13708
BCLllA-11574 - UCAUUUUAGAGUCCGCGUGU 20 13709
BCLllA-11575 - UUCAUUUUAGAGUCCGCGUGU 21 13710
BCLllA-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 13711
BCLllA-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 13712
BCLllA-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 13713
BCLllA-11579 - UUUAGAGUCCGCGUGUGU 18 13714
BCLllA-11580 - UUUUAGAGUCCGCGUGUGU 19 13715
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 13716
BCLllA-11581 - CAU UUUAGAGUCCGCGUGUGU 21 13717
BCLllA-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 13718
BCLllA-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 13719
BCLllA-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 13720
BCLllA-11585 - AUUGCCGUGUAUGCACUU 18 13721
BCLllA-11586 - CAUUGCCGUGUAUGCACUU 19 13722
BCLllA-11587 - CCAUUGCCGUGUAUGCACUU 20 13723
BCLllA-11588 - ACCAUUGCCGUGUAUGCACUU 21 13724
BCLllA-11589 - AACCAUUGCCGUGUAUGCACUU 22 13725
BCLllA-11590 - GAACCAUUGCCGUGUAUGCACUU 23 13726
BCLllA-11591 - GGAACCAUUGCCGUGUAUGCACUU 24 13727
Table 19D provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the fourth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene. Table 19D
Figure imgf000461_0001
BCLllA-11627 + CGCGGGCGGAGGGAAGCCAGG 21 13766
BCLllA-11628 + GCGCGGGCGGAGGGAAGCCAGG 22 13767
BCLllA-11629 + AGCGCGGGCGGAGGGAAGCCAGG 23 13768
BCLllA-11630 + AAGCGCGGGCGGAGGGAAGCCAGG 24 13769
BCLllA-11631 + CGGAAAGGAGGAAAGAGG 18 13770
BCLllA-11632 + GCGGAAAGGAGGAAAGAGG 19 13771
BCLllA-10187 + GGCGGAAAGGAGGAAAGAGG 20 13772
BCLllA-11633 + CGGCGGAAAGGAGGAAAGAGG 21 13773
BCLllA-11634 + GCGGCGGAAAGGAGGAAAGAGG 22 13774
BCLllA-11635 + AGCGGCGGAAAGGAGGAAAGAGG 23 13775
BCLllA-11636 + A AG CGG CG G AAAG GAG G AAAG AG G 24 13776
BCLllA-11637 + AAACUGGCGGGGCGGGGG 18 13777
BCLllA-11638 + AAAACUGGCGGGGCGGGGG 19 13778
BCLllA-10209 + CAAAACUGGCGGGGCGGGGG 20 13779
BCLllA-11639 + GCAAAACUGGCGGGGCGGGGG 21 13780
BCLllA-11640 + UGCAAAACUGGCGGGGCGGGGG 22 13781
BCLllA-11641 + U UGCAAAACUGGCGGGGCGGGGG 23 13782
BCLllA-11642 + U UUGCAAAACUGGCGGGGCGGGGG 24 13783
BCLllA-11643 + CCACCCCCAGGU UUGCAU 18 13784
BCLllA-11644 + CCCACCCCCAGGUUUGCAU 19 13785
BCLllA-11645 + UCCCACCCCCAGGUU UGCAU 20 13786
BCLllA-11646 + CUCCCACCCCCAGGUUUGCAU 21 13787
BCLllA-11647 + GCUCCCACCCCCAGGUUUGCAU 22 13788
BCLllA-11648 + AGCUCCCACCCCCAGGU UUGCAU 23 13789
BCLllA-11649 + CAGCUCCCACCCCCAGGUU UGCAU 24 13790
BCLllA-11650 + GCCUAAGUUUGGAGGGCU 18 13791
BCLllA-11651 + AGCCUAAGUUUGGAGGGCU 19 13792
BCLllA-11652 + CAGCCUAAGUUUGGAGGGCU 20 13793
BCLllA-11653 + CCAGCCUAAGU UUGGAGGGCU 21 13794
BCLllA-11654 + UCCAGCCUAAGUUUGGAGGGCU 22 13795
BCLllA-11655 + AUCCAGCCUAAGUUUGGAGGGCU 23 13796
BCLllA-11656 + AAUCCAGCCUAAGUU UGGAGGGCU 24 13797
BCLllA-11657 + CCACUUUCUCACUAUUGU 18 13798
BCLllA-11658 + GCCACUUUCUCACUAUUGU 19 13799
BCLllA-10251 + UGCCACUU UCUCACUAUUGU 20 13800
BCLllA-11659 + GUGCCACUUUCUCACUAUUGU 21 13801
BCLllA-11660 + AGUGCCACUU UCUCACUAUUGU 22 13802
BCLllA-11661 + CAGUGCCACUUUCUCACUAUUGU 23 13803
BCLllA-11662 + ACAGUGCCACU UUCUCACUAUUGU 24 13804
BCLllA-11663 - UUAUUUCUCUUUUCGAAA 18 13805
BCLllA-11664 - UUUAUUUCUCUUUUCGAAA 19 13806
BCLllA-10027 - CUUUAUUUCUCUUUUCGAAA 20 13807 BCLllA-11665 - GCUUUAUUUCUCUUUUCGAAA 21 13808
BCLllA-11666 - CGCUUUAUUUCUCUUUUCGAAA 22 13809
BCLllA-11667 - CCGCUUUAUUUCUCUUUUCGAAA 23 13810
BCLllA-11668 - GCCGCUUUAUUUCUCUUUUCGAAA 24 13811
BCLllA-11669 - CGGCGGCGGGGAGGGGAA 18 13812
BCLllA-11670 - GCGGCGGCGGGGAGGGGAA 19 13813
BCLllA-11671 - GGCGGCGGCGGGGAGGGGAA 20 13814
BCLllA-11672 - CGGCGGCGGCGGGGAGGGGAA 21 13815
BCLllA-11673 - GCGGCGGCGGCGGGGAGGGGAA 22 13816
BCLllA-11674 - CGCGGCGGCGGCGGGGAGGGGAA 23 13817
BCLllA-11675 - GCGCGGCGGCGGCGGGGAGGGGAA 24 13818
BCLllA-11676 - UGGGGGGGUAGGGAGGGA 18 13819
BCLllA-11677 - AUGGGGGGGUAGGGAGGGA 19 13820
BCLllA-11678 - AAUGGGGGGGUAGGGAGGGA 20 13821
BCLllA-11679 - AAAUGGGGGGGUAGGGAGGGA 21 13822
BCLllA-11680 - AAAAUGGGGGGGUAGGGAGGGA 22 13823
BCLllA-11681 - GAAAAUGGGGGGGUAGGGAGGGA 23 13824
BCLllA-11682 - AGAAAAUGGGGGGGUAGGGAGGGA 24 13825
BCLllA-11683 - AAAAUGGGGGGGUAGGGA 18 13826
BCLllA-11684 - GAAAAUGGGGGGGUAGGGA 19 13827
BCLllA-10049 - AGAAAAUGGGGGGGUAGGGA 20 13828
BCLllA-11685 - AAGAAAAUGGGGGGGUAGGGA 21 13829
BCLllA-11686 - UAAGAAAAUGGGGGGGUAGGGA 22 13830
BCLllA-11687 - GU AAGAAAAUGGGGGGGUAGGGA 23 13831
BCLllA-11688 - CGUAAGAAAAUGGGGGGGUAGGGA 24 13832
BCLllA-11689 - AAGGGGCCCCCGGCGCUC 18 13833
BCLllA-11690 - AAAGGGGCCCCCGGCGCUC 19 13834
BCLllA-11691 - GAAAGGGGCCCCCGGCGCUC 20 13835
BCLllA-11692 - GGAAAGGGGCCCCCGGCGCUC 21 13836
BCLllA-11693 - UGGAAAGGGGCCCCCGGCGCUC 22 13837
BCLllA-11694 - GUGGAAAGGGGCCCCCGGCGCUC 23 13838
BCLllA-11695 - UGUGGAAAGGGGCCCCCGGCGCUC 24 13839
BCLllA-11696 - CUUUUGUUCCGGCCAGAG 18 13840
BCLllA-11697 - CCUUUUGUUCCGGCCAGAG 19 13841
BCLllA-11698 - GCCUUUUGUUCCGGCCAGAG 20 13842
BCLllA-11699 - CGCCUUUUGUUCCGGCCAGAG 21 13843
BCLllA-11700 - CCGCCUUUUGUUCCGGCCAGAG 22 13844
BCLllA-11701 - GCCGCCUUUUGUUCCGGCCAGAG 23 13845
BCLllA-11702 - UGCCGCCUUUUGUUCCGGCCAGAG 24 13846
BCLllA-11703 - GUGGGUGUGCGUACGGAG 18 13847
BCLllA-11704 - AGUGGGUGUGCGUACGGAG 19 13848
BCLllA-11705 - AAGUGGGUGUGCGUACGGAG 20 13849 BCLllA-11706 - GAAGUGGGUGUGCGUACGGAG 21 13850
BCLllA-11707 - GGAAGUGGGUGUGCGUACGGAG 22 13851
BCLllA-11708 - GGGAAGUGGGUGUGCGUACGGAG 23 13852
BCLllA-11709 - GGGGAAGUGGGUGUGCGUACGGAG 24 13853
BCLllA-11710 - CCGGCGCUCCUGAGUCCG 18 13854
BCLllA-11711 - CCCGGCGCUCCUGAGUCCG 19 13855
BCLllA-10172 - CCCCGGCGCUCCUGAGUCCG 20 13856
BCLllA-11712 - CCCCCGGCGCUCCUGAGUCCG 21 13857
BCLllA-11713 - GCCCCCGGCGCUCCUGAGUCCG 22 13858
BCLllA-11714 - GGCCCCCGGCGCUCCUGAGUCCG 23 13859
BCLllA-11715 - GGGCCCCCGGCGCUCCUGAGUCCG 24 13860
BCLllA-11716 - CAGCCCUCCAAACUUAGG 18 13861
BCLllA-11717 - GCAGCCCUCCAAACUUAGG 19 13862
BCLllA-11718 - CGCAGCCCUCCAAACUUAGG 20 13863
BCLllA-11719 - CCGCAGCCCUCCAAACUUAGG 21 13864
BCLllA-11720 - CCCGCAGCCCUCCAAACUUAGG 22 13865
BCLllA-11721 - ACCCGCAGCCCUCCAAACUUAGG 23 13866
BCLllA-11722 - GACCCGCAGCCCUCCAAACUUAGG 24 13867
BCLllA-11723 - CUCACCGUAAGAAAAUGG 18 13868
BCLllA-11724 - ACU CACCG UAAGAAAAUGG 19 13869
BCLllA-10214 - CACU CACCG UAAGAAAAUGG 20 13870
BCLllA-11725 - CCACUCACCGUAAGAAAAUGG 21 13871
BCLllA-11726 - CCCACUCACCGUAAGAAAAUGG 22 13872
BCLllA-11727 - UCCCACUCACCGUAAGAAAAUGG 23 13873
BCLllA-11728 - UUCCCACUCACCGUAAGAAAAUGG 24 13874
BCLllA-11729 - GAGGCUCAGCUCUCAACU 18 13875
BCLllA-11730 - GGAGGCUCAGCUCUCAACU 19 13876
BCLllA-11731 - UGGAGGCUCAGCUCUCAACU 20 13877
BCLllA-11732 - UUGGAGGCUCAGCUCUCAACU 21 13878
BCLllA-11733 - CUUGGAGGCUCAGCUCUCAACU 22 13879
BCLllA-11734 - ACUUGGAGGCUCAGCUCUCAACU 23 13880
BCLllA-11735 - AACUUGGAGGCUCAGCUCUCAACU 24 13881
BCLllA-11736 - CAACUCACAUGCAAACCU 18 13882
BCLllA-11737 - ACAACUCACAUGCAAACCU 19 13883
BCLllA-10235 - AACAACUCACAUGCAAACCU 20 13884
BCLllA-11738 - GAACAACUCACAUGCAAACCU 21 13885
BCLllA-11739 - CGAACAACUCACAUGCAAACCU 22 13886
BCLllA-11740 - GCGAACAACUCACAUGCAAACCU 23 13887
BCLllA-11741 - UGCGAACAACUCACAUGCAAACCU 24 13888
BCLllA-10351 - UUGAAUAAUCUUUCAUUU 18 13889
BCLllA-10352 - UUUGAAUAAUCUUUCAUUU 19 13890
BCLllA-10353 - UUUUGAAUAAUCUUUCAUUU 20 13891 BCLllA-10354 - U UUUUGAAUAAUCUUUCAUUU 21 13892
BCLllA-10355 - U UUUUUGAAUAAUCUU UCAUUU 22 13893
BCLllA-10356 - CUUUUUUGAAUAAUCUUUCAUUU 23 13894
BCLllA-10357 - UCUUUUUUGAAUAAUCUUUCAUUU 24 13895
BCLllA-11742 - GCUCUAUUU UUUUCUUUU 18 13896
BCLllA-11743 - CGCUCUAU UUUUUUCUUUU 19 13897
BCLllA-11744 - UCGCUCUAUUUUUUUCUUUU 20 13898
BCLllA-11745 - CUCGCUCUAUUUUUUUCUUUU 21 13899
BCLllA-11746 - UCUCGCUCUAUUUUUU UCUUUU 22 13900
BCLllA-11747 - CUCUCGCUCUAU UUUUUUCUUUU 23 13901
BCLllA-11748 - ACUCUCGCUCUAUUUUU UUCUUUU 24 13902
Table 19E provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the fifth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS, and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 19E
Figure imgf000465_0001
BCLllA-11760 + U AAAAUG AAAG AU U AU U CAAAA 22 13914
BCLllA-11761 + CUAAAAUGAAAGAUUAUUCAAAA 23 13915
BCLllA-11762 + UCUAAAAUGAAAGAUUAUUCAAAA 24 13916
BCLllA-11763 + UGCAUUCCUUUUCGAAAA 18 13917
BCLllA-11764 + U UGCAUUCCUUUUCGAAAA 19 13918
BCLllA-11765 + AUUGCAUUCCUUUUCGAAAA 20 13919
BCLllA-11766 + CAUUGCAUUCCUUUUCGAAAA 21 13920
BCLllA-11767 + UCAUUGCAUUCCUUU UCGAAAA 22 13921
BCLllA-11768 + AUCAUUGCAUUCCUUUUCGAAAA 23 13922
BCLllA-11769 + AAUCAUUGCAUUCCUUU UCGAAAA 24 13923
BCLllA-11770 + GCGGCGGAAAGGAGGAAA 18 13924
BCLllA-11771 + AGCGGCGG AAAG G AG G AAA 19 13925
BCLllA-11772 + AAGCGGCGGAAAGGAGGAAA 20 13926
BCLllA-11773 + AAAG CG G CG G AAAG G AG G AAA 21 13927
BCLllA-11774 + U AAAG CG G CG G AAAG G AG G A A A 22 13928
BCLllA-11775 + A U A A AG CG G CG G A A AG G AG G AAA 23 13929
BCLllA-11776 + AAUAAAGCGGCGGAAAGGAGGAAA 24 13930
BCLllA-11777 + GCCCGCGCGGCCUGGAAA 18 13931
BCLllA-11778 + AGCCCGCGCGGCCUGGAAA 19 13932
BCLllA-11779 + GAGCCCGCGCGGCCUGGAAA 20 13933
BCLllA-11780 + GGAGCCCGCGCGGCCUGGAAA 21 13934
BCLllA-11781 + AGGAGCCCGCGCGGCCUGGAAA 22 13935
BCLllA-11782 + CAGGAGCCCGCGCGGCCUGGAAA 23 13936
BCLllA-11783 + CCAGGAGCCCGCGCGGCCUGGAAA 24 13937
BCLllA-10371 + ACACACGCGGACUCUAAA 18 13938
BCLllA-10372 + CACACACGCGGACUCUAAA 19 13939
BCLllA-10373 + CCACACACGCGGACUCUAAA 20 13940
BCLllA-10374 + CCCACACACGCGGACUCUAAA 21 13941
BCLllA-10375 + CCCCACACACGCGGACUCUAAA 22 13942
BCLllA-10376 + CCCCCACACACGCGGACUCUAAA 23 13943
BCLllA-10377 + CCCCCCACACACGCGGACUCUAAA 24 13944
BCLllA-11784 + AUUGCAUUCCUUUUCGAA 18 13945
BCLllA-11785 + CAUUGCAUUCCUUUUCGAA 19 13946
BCLllA-11786 + UCAUUGCAUUCCUUU UCGAA 20 13947
BCLllA-11787 + AUCAUUGCAUUCCUUUUCGAA 21 13948
BCLllA-11788 + AAUCAUUGCAUUCCUUU UCGAA 22 13949
BCLllA-11789 + GAAUCAUUGCAUUCCUU UUCGAA 23 13950
BCLllA-11790 + GGAAUCAUUGCAUUCCUUUUCGAA 24 13951
BCLllA-11791 + AGAAAUAAAGCGGCGGAA 18 13952
BCLllA-11792 + GAGAAAUAAAGCGGCGGAA 19 13953
BCLllA-10031 + AGAGAAAUAAAGCGGCGGAA 20 13954
BCLllA-11793 + AAGAGAAAUAAAGCGGCGGAA 21 13955 BCLllA-11794 + AAAGAGAAAUAAAGCGGCGGAA 22 13956
BCLllA-11795 + AAAAGAGAAAUAAAGCGGCGGAA 23 13957
BCLllA-11796 + GAAAAGAGAAAUAAAGCGGCGGAA 24 13958
BCLllA-11797 + CCCGAGGAGAGGACAGCA 18 13959
BCLllA-11798 + GCCCGAGGAGAGGACAGCA 19 13960
BCLllA-11799 + UGCCCGAGGAGAGGACAGCA 20 13961
BCLllA-11800 + U UGCCCGAGGAGAGGACAGCA 21 13962
BCLllA-11801 + U UUGCCCGAGGAGAGGACAGCA 22 13963
BCLllA-11802 + CUUUGCCCGAGGAGAGGACAGCA 23 13964
BCLllA-11803 + ACUUUGCCCGAGGAGAGGACAGCA 24 13965
BCLllA-11804 + CCAAG U UACAGCU CCG CA 18 13966
BCLllA-11805 + UCCAAGUUACAGCUCCGCA 19 13967
BCLllA-11806 + CUCCAAGUUACAGCUCCGCA 20 13968
BCLllA-11807 + CCUCCAAGU UACAGCUCCGCA 21 13969
BCLllA-11808 + GCCUCCAAGUUACAGCUCCGCA 22 13970
BCLllA-11809 + AGCCUCCAAGUUACAGCUCCGCA 23 13971
BCLllA-11810 + GAGCCUCCAAGUUACAGCUCCGCA 24 13972
BCLllA-11811 + GAGCCGGCA C A A A AG G C A 18 13973
BCLllA-11812 + GG AG CCGG CACAAAAGG CA 19 13974
BCLllA-11813 + AGGAGCCGGCACAAAAGGCA 20 13975
BCLllA-11814 + GAGGAGCCGGCACAAAAGGCA 21 13976
BCLllA-11815 + CGAGGAGCCGGCACAAAAGGCA 22 13977
BCLllA-11816 + G CG AGG AG CCGG CACAAAAGG CA 23 13978
BCLllA-11817 + CGCGAGGAGCCGGCACAAAAGGCA 24 13979
BCLllA-11818 + AAAUAGAGCGAGAGUGCA 18 13980
BCLllA-11819 + AAAAUAGAGCGAGAGUGCA 19 13981
BCLllA-11820 + AAAAAUAGAGCGAGAGUGCA 20 13982
BCLllA-11821 + AAAAAAUAGAGCGAGAGUGCA 21 13983
BCLllA-11822 + AAAAAAAU AG AG CG AG AG UG CA 22 13984
BCLllA-11823 + G A A A A A A A UAGAGCGAGAGUGCA 23 13985
BCLllA-11824 + AGAAAAAAAUAGAGCGAGAGUGCA 24 13986
BCLllA-11825 + CCGCGCGGCCUGGAAAGA 18 13987
BCLllA-11826 + CCCGCGCGGCCUGGAAAGA 19 13988
BCLllA-10040 + GCCCGCGCGGCCUGGAAAGA 20 13989
BCLllA-11827 + AGCCCGCGCGGCCUGGAAAGA 21 13990
BCLllA-11828 + GAGCCCGCGCGGCCUGGAAAGA 22 13991
BCLllA-11829 + GGAGCCCGCGCGGCCUGGAAAGA 23 13992
BCLllA-11830 + AGGAGCCCGCGCGGCCUGGAAAGA 24 13993
BCLllA-11831 + A A A A A AG A A A A AAA U AG A 18 13994
BCLllA-11832 + CAAAAAAGAAAAAAAUAGA 19 13995
BCLllA-11833 + U CAAAAAAGAAAAAAAUAGA 20 13996
BCLllA-11834 + U U CAAAAAAGAAAAAAAUAGA 21 13997 BCLllA-11835 + A U U C A A A A A AG A A A A A A A U AG A 22 13998
BCLllA-11836 + U A U U C A A A A A AG A A A A A A A U AG A 23 13999
BCLllA-11837 + U UAUUCAAAAAAGAAAAAAAUAGA 24 14000
BCLllA-11838 + CAGCUCCGCAGCGGGCGA 18 14001
BCLllA-11839 + ACAGCUCCGCAGCGGGCGA 19 14002
BCLllA-10044 + UACAGCUCCGCAGCGGGCGA 20 14003
BCLllA-11840 + UUACAGCUCCGCAGCGGGCGA 21 14004
BCLllA-11841 + GUUACAGCUCCGCAGCGGGCGA 22 14005
BCLllA-11842 + AGUUACAGCUCCGCAGCGGGCGA 23 14006
BCLllA-11843 + AAGUUACAGCUCCGCAGCGGGCGA 24 14007
BCLllA-11844 + GGAAACUUUGCCCGAGGA 18 14008
BCLllA-11845 + GGGAAACUUUGCCCGAGGA 19 14009
BCLllA-11846 + CGGGAAACUUUGCCCGAGGA 20 14010
BCLllA-11847 + UCGGGAAACUUUGCCCGAGGA 21 14011
BCLllA-11848 + CUCGGGAAACUUUGCCCGAGGA 22 14012
BCLllA-11849 + GCUCGGGAAACUUUGCCCGAGGA 23 14013
BCLllA-11850 + CGCUCGGGAAACUUUGCCCGAGGA 24 14014
BCLllA-11851 + AAGCGGCGGAAAGGAGGA 18 14015
BCLllA-11852 + A A AG CG G CG G A A AG G AG G A 19 14016
BCLllA-11853 + UAAAGCGGCGGAAAGGAGGA 20 14017
BCLllA-11854 + AUAAAGCGGCGGAAAGGAGGA 21 14018
BCLllA-11855 + AAUAAAGCGGCGGAAAGGAGGA 22 14019
BCLllA-11856 + AAAUAAAGCGGCGGAAAGGAGGA 23 14020
BCLllA-11857 + GAAAUAAAGCGGCGGAAAGGAGGA 24 14021
BCLllA-11858 + GAGAAAUAAAGCGGCGGA 18 14022
BCLllA-11859 + AGAGAAAUAAAGCGGCGGA 19 14023
BCLllA-11860 + AAGAGAAAUAAAGCGGCGGA 20 14024
BCLllA-11861 + AAAGAGAAAUAAAGCGGCGGA 21 14025
BCLllA-11862 + A A A AG AG A A A U A A AG CG G CG G A 22 14026
BCLllA-11863 + G A A A AG AG AAA U A A AG CG G CG G A 23 14027
BCLllA-11864 + CGAAAAGAGAAAUAAAGCGGCGGA 24 14028
BCLllA-11865 + UGGGGAAGCGCGGGCGGA 18 14029
BCLllA-11866 + CUGGGGAAGCGCGGGCGGA 19 14030
BCLllA-10048 + GCUGGGGAAGCGCGGGCGGA 20 14031
BCLllA-11867 + GGCUGGGGAAGCGCGGGCGGA 21 14032
BCLllA-11868 + GGGCUGGGGAAGCGCGGGCGGA 22 14033
BCLllA-11869 + CGGGCUGGGGAAGCGCGGGCGGA 23 14034
BCLllA-11870 + CCGGGCUGGGGAAGCGCGGGCGGA 24 14035
BCLllA-11871 + CCAAGGCCGAGCCAGGGA 18 14036
BCLllA-11872 + CCCAAGGCCGAGCCAGGGA 19 14037
BCLllA-11873 + CCCCAAGGCCGAGCCAGGGA 20 14038
BCLllA-11874 + CCCCCAAGGCCGAGCCAGGGA 21 14039 BCLllA-11875 + GCCCCCAAGGCCGAGCCAGGGA 22 14040
BCLllA-11876 + CGCCCCCAAGGCCGAGCCAGGGA 23 14041
BCLllA-11877 + GCGCCCCCAAGGCCGAGCCAGGGA 24 14042
BCLllA-11878 + CGGCCUGGAAAGAGGGGA 18 14043
BCLllA-11879 + GCGGCCUGGAAAGAGGGGA 19 14044
BCLllA-11880 + CGCGGCCUGGAAAGAGGGGA 20 14045
BCLllA-11881 + GCGCGGCCUGGAAAGAGGGGA 21 14046
BCLllA-11882 + CGCGCGGCCUGGAAAGAGGGGA 22 14047
BCLllA-11883 + CCGCGCGGCCUGGAAAGAGGGGA 23 14048
BCLllA-11884 + CCCGCGCGGCCUGGAAAGAGGGGA 24 14049
BCLllA-11885 + UGGCGGGGCGGGGGGGGA 18 14050
BCLllA-11886 + CUGGCGGGGCGGGGGGGGA 19 14051
BCLllA-11887 + ACUGGCGGGGCGGGGGGGGA 20 14052
BCLllA-11888 + AACUGGCGGGGCGGGGGGGGA 21 14053
BCLllA-11889 + AAACUGGCGGGGCGGGGGGGGA 22 14054
BCLllA-11890 + AAAACUGGCGGGGCGGGGGGGGA 23 14055
BCLllA-11891 + CAAAACUGGCGGGGCGGGGGGGGA 24 14056
BCLllA-11892 + GGGCGAGGGGAGGUGGGA 18 14057
BCLllA-11893 + CGGGCGAGGGGAGGUGGGA 19 14058
BCLllA-10052 + GCGGGCGAGGGGAGGUGGGA 20 14059
BCLllA-11894 + AGCGGGCGAGGGGAGGUGGGA 21 14060
BCLllA-11895 + CAGCGGGCGAGGGGAGGUGGGA 22 14061
BCLllA-11896 + GCAGCGGGCGAGGGGAGGUGGGA 23 14062
BCLllA-11897 + CGCAGCGGGCGAGGGGAGGUGGGA 24 14063
BCLllA-11898 + GAGCCCGCGCGGCCUGGA 18 14064
BCLllA-11899 + GGAGCCCGCGCGGCCUGGA 19 14065
BCLllA-11900 + AGGAGCCCGCGCGGCCUGGA 20 14066
BCLllA-11901 + CAGGAGCCCGCGCGGCCUGGA 21 14067
BCLllA-11902 + CCAGGAGCCCGCGCGGCCUGGA 22 14068
BCLllA-11903 + UCCAGGAGCCCGCGCGGCCUGGA 23 14069
BCLllA-11904 + CUCCAGGAGCCCGCGCGGCCUGGA 24 14070
BCLllA-11905 + CCCAUUUUCUUACGGUGA 18 14071
BCLllA-11906 + CCCCAUU UUCUUACGGUGA 19 14072
BCLllA-11907 + CCCCCAUUUUCUUACGGUGA 20 14073
BCLllA-11908 + CCCCCCAUUUUCUUACGGUGA 21 14074
BCLllA-11909 + CCCCCCCAUU UUCU UACGGUGA 22 14075
BCLllA-11910 + ACCCCCCCAUUU UCUUACGGUGA 23 14076
BCLllA-11911 + UACCCCCCCAUU UUCUUACGGUGA 24 14077
BCLllA-11912 + GAGGGAGCGCACGGCAAC 18 14078
BCLllA-11913 + GGAGGGAGCGCACGGCAAC 19 14079
BCLllA-11914 + GGGAGGGAGCGCACGGCAAC 20 14080
BCLllA-11915 + UGGGAGGGAGCGCACGGCAAC 21 14081 BCLllA-11916 + GUGGGAGGGAGCGCACGGCAAC 22 14082
BCLllA-11917 + GGUGGGAGGGAGCGCACGGCAAC 23 14083
BCLllA-11918 + AGGUGGGAGGGAGCGCACGGCAAC 24 14084
BCLllA-10612 + CUGCUCCCCCCCACACAC 18 14085
BCLllA-10613 + CCUGCUCCCCCCCACACAC 19 14086
BCLllA-10614 + CCCUGCUCCCCCCCACACAC 20 14087
BCLllA-10615 + GCCCUGCUCCCCCCCACACAC 21 14088
BCLllA-10616 + CGCCCUGCUCCCCCCCACACAC 22 14089
BCLllA-10617 + GCGCCCUGCUCCCCCCCACACAC 23 14090
BCLllA-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 14091
BCLllA-11919 + AAUAGAGCGAGAGUGCAC 18 14092
BCLllA-11920 + AAAUAGAGCGAGAGUGCAC 19 14093
BCLllA-10059 + AAAAUAGAGCGAGAGUGCAC 20 14094
BCLllA-11921 + AAAAAUAGAGCGAGAGUGCAC 21 14095
BCLllA-11922 + AAAAAAUAGAGCGAGAGUGCAC 22 14096
BCLllA-11923 + AAAAAAAUAGAGCGAGAGUGCAC 23 14097
BCLllA-11924 + GAAAAAAAUAGAGCGAGAGUGCAC 24 14098
BCLllA-11925 + ACAGCAAAGAAAAAUCAC 18 14099
BCLllA-11926 + GACAGCAAAGAAAAAUCAC 19 14100
BCLllA-11927 + GGACAGCAAAGAAAAAUCAC 20 14101
BCLllA-11928 + AG G AC AG CAAAG AAAAAU CAC 21 14102
BCLllA-11929 + GAGGACAGCAAAGAAAAAUCAC 22 14103
BCLllA-11930 + AGAGGACAG CAAAG AAAAAU CAC 23 14104
BCLllA-11931 + GAGAGGACAGCAAAGAAAAAUCAC 24 14105
BCLllA-11932 + CAAGGCCGAGCCAGGGAC 18 14106
BCLllA-11933 + CCAAGGCCGAGCCAGGGAC 19 14107
BCLllA-10063 + CCCAAGGCCGAGCCAGGGAC 20 14108
BCLllA-11934 + CCCCAAGGCCGAGCCAGGGAC 21 14109
BCLllA-11935 + CCCCCAAGGCCGAGCCAGGGAC 22 14110
BCLllA-11936 + GCCCCCAAGGCCGAGCCAGGGAC 23 14111
BCLllA-11937 + CGCCCCCAAGGCCGAGCCAGGGAC 24 14112
BCLllA-11938 + GGCCUGGAAAGAGGGGAC 18 14113
BCLllA-11939 + CGGCCUGGAAAGAGGGGAC 19 14114
BCLllA-10064 + GCGGCCUGGAAAGAGGGGAC 20 14115
BCLllA-11940 + CGCGGCCUGGAAAGAGGGGAC 21 14116
BCLllA-11941 + GCGCGGCCUGGAAAGAGGGGAC 22 14117
BCLllA-11942 + CGCGCGGCCUGGAAAGAGGGGAC 23 14118
BCLllA-11943 + CCGCGCGGCCUGGAAAGAGGGGAC 24 14119
BCLllA-11944 + AUAGAGCGAGAGUGCACC 18 14120
BCLllA-11945 + AAUAGAGCGAGAGUGCACC 19 14121
BCLllA-10067 + AAAUAGAGCGAGAGUGCACC 20 14122
BCLllA-11946 + AAAAUAGAGCGAGAGUGCACC 21 14123 BCLllA-11947 + AAAAAUAGAGCGAGAGUGCACC 22 14124
BCLllA-11948 + AAAAAAUAGAGCGAGAGUGCACC 23 14125
BCLllA-11949 + AAAAAAAUAGAGCGAGAGUGCACC 24 14126
BCLllA-11950 + AAGGCCGAGCCAGGGACC 18 14127
BCLllA-11951 + CAAGGCCGAGCCAGGGACC 19 14128
BCLllA-10068 + CCAAGGCCGAGCCAGGGACC 20 14129
BCLllA-11952 + CCCAAGGCCGAGCCAGGGACC 21 14130
BCLllA-11953 + CCCCAAGGCCGAGCCAGGGACC 22 14131
BCLllA-11954 + CCCCCAAGGCCGAGCCAGGGACC 23 14132
BCLllA-11955 + GCCCCCAAGGCCGAGCCAGGGACC 24 14133
BCLllA-11956 + GCCUGGAAAGAGGGGACC 18 14134
BCLllA-11957 + GGCCUGGAAAGAGGGGACC 19 14135
BCLllA-10069 + CGGCCUGGAAAGAGGGGACC 20 14136
BCLllA-11958 + GCGGCCUGGAAAGAGGGGACC 21 14137
BCLllA-11959 + CGCGGCCUGGAAAGAGGGGACC 22 14138
BCLllA-11960 + GCGCGGCCUGGAAAGAGGGGACC 23 14139
BCLllA-11961 + CGCGCGGCCUGGAAAGAGGGGACC 24 14140
BCLllA-11962 + CCCGCUGCACACUUGACC 18 14141
BCLllA-11963 + UCCCGCUGCACACUUGACC 19 14142
BCLllA-11964 + CUCCCGCUGCACACUUGACC 20 14143
BCLllA-11965 + CCUCCCGCUGCACACUUGACC 21 14144
BCLllA-11966 + UCCUCCCGCUGCACACU UGACC 22 14145
BCLllA-11967 + UUCCUCCCGCUGCACACUUGACC 23 14146
BCLllA-11968 + UUUCCUCCCGCUGCACACUUGACC 24 14147
BCLllA-11969 + CGGCGCAGGCCGGGGCCC 18 14148
BCLllA-11970 + GCGGCGCAGGCCGGGGCCC 19 14149
BCLllA-11971 + GGCGGCGCAGGCCGGGGCCC 20 14150
BCLllA-11972 + AGGCGGCGCAGGCCGGGGCCC 21 14151
BCLllA-11973 + CAGGCGGCGCAGGCCGGGGCCC 22 14152
BCLllA-11974 + GCAGGCGGCGCAGGCCGGGGCCC 23 14153
BCLllA-11975 + GGCAGGCGGCGCAGGCCGGGGCCC 24 14154
BCLllA-11976 + GCUCGGGAAACUUUGCCC 18 14155
BCLllA-11977 + CGCUCGGGAAACUUUGCCC 19 14156
BCLllA-11978 + GCGCUCGGGAAACUUUGCCC 20 14157
BCLllA-11979 + UGCGCUCGGGAAACUUUGCCC 21 14158
BCLllA-11980 + CUGCGCUCGGGAAACUU UGCCC 22 14159
BCLllA-11981 + GCUGCGCUCGGGAAACU UUGCCC 23 14160
BCLllA-11982 + GGCUGCGCUCGGGAAACUUUGCCC 24 14161
BCLllA-11983 + UCUCACCUCUUUUCUCCC 18 14162
BCLllA-11984 + GUCUCACCUCUU UUCUCCC 19 14163
BCLllA-10081 + AGUCUCACCUCUUU UCUCCC 20 14164
BCLllA-11985 + CAGUCUCACCUCU UUUCUCCC 21 14165 BCLllA-11986 + CCAGUCUCACCUCUUUUCUCCC 22 14166
BCLllA-11987 + GCCAGUCUCACCUCUUUUCUCCC 23 14167
BCLllA-11988 + AGCCAGUCUCACCUCUU UUCUCCC 24 14168
BCLllA-11989 + GGGGCCGAAGUAAAAGCC 18 14169
BCLllA-11990 + AGGGGCCGAAGUAAAAGCC 19 14170
BCLllA-11991 + CAGGGGCCGAAGUAAAAGCC 20 14171
BCLllA-11992 + CCAGGGGCCGAAGUAAAAGCC 21 14172
BCLllA-11993 + G CCAG G GG CCG A AG U AAAAG CC 22 14173
BCLllA-11994 + CGCCAGGGGCCGAAGUAAAAGCC 23 14174
BCLllA-11995 + ACGCCAGGGGCCGAAGUAAAAGCC 24 14175
BCLllA-11996 + CACCGGGAGGCUGCAGCC 18 14176
BCLllA-11997 + GCACCGGGAGGCUGCAGCC 19 14177
BCLllA-11998 + UGCACCGGGAGGCUGCAGCC 20 14178
BCLllA-11999 + GUGCACCGGGAGGCUGCAGCC 21 14179
BCLllA-12000 + AGUGCACCGGGAGGCUGCAGCC 22 14180
BCLllA-12001 + GAGUGCACCGGGAGGCUGCAGCC 23 14181
BCLllA-12002 + AGAGUGCACCGGGAGGCUGCAGCC 24 14182
BCLllA-12003 + CGCCCCCAAGGCCGAGCC 18 14183
BCLllA-12004 + GCGCCCCCAAGGCCGAGCC 19 14184
BCLllA-10085 + GGCGCCCCCAAGGCCGAGCC 20 14185
BCLllA-12005 + GGGCGCCCCCAAGGCCGAGCC 21 14186
BCLllA-12006 + AGGGCGCCCCCAAGGCCGAGCC 22 14187
BCLllA-12007 + GAGGGCGCCCCCAAGGCCGAGCC 23 14188
BCLllA-12008 + CGAGGGCGCCCCCAAGGCCGAGCC 24 14189
BCLllA-12009 + UCCCCGCGUGUGGACGCC 18 14190
BCLllA-12010 + CUCCCCGCGUGUGGACGCC 19 14191
BCLllA-10086 + GCUCCCCGCGUGUGGACGCC 20 14192
BCLllA-12011 + CGCUCCCCGCGUGUGGACGCC 21 14193
BCLllA-12012 + UCGCUCCCCGCGUGUGGACGCC 22 14194
BCLllA-12013 + CUCGCUCCCCGCGUGUGGACGCC 23 14195
BCLllA-12014 + GCUCGCUCCCCGCGUGUGGACGCC 24 14196
BCLllA-12015 + CGCGGACUCAGGAGCGCC 18 14197
BCLllA-12016 + CCGCGGACUCAGGAGCGCC 19 14198
BCLllA-10087 + UCCGCGGACUCAGGAGCGCC 20 14199
BCLllA-12017 + CUCCGCGGACUCAGGAGCGCC 21 14200
BCLllA-12018 + ACUCCGCGGACUCAGGAGCGCC 22 14201
BCLllA-12019 + GACUCCGCGGACUCAGGAGCGCC 23 14202
BCLllA-12020 + CGACUCCGCGGACUCAGGAGCGCC 24 14203
BCLllA-12021 + CCAGGAGCCCGCGCGGCC 18 14204
BCLllA-12022 + UCCAGGAGCCCGCGCGGCC 19 14205
BCLllA-10089 + CUCCAGGAGCCCGCGCGGCC 20 14206
BCLllA-12023 + UCUCCAGGAGCCCGCGCGGCC 21 14207 BCLllA-12024 + GUCUCCAGGAGCCCGCGCGGCC 22 14208
BCLllA-12025 + AGUCUCCAGGAGCCCGCGCGGCC 23 14209
BCLllA-12026 + AAGUCUCCAGGAGCCCGCGCGGCC 24 14210
BCLllA-12027 + GGCCCCUCUCCCGACUCC 18 14211
BCLllA-12028 + CGGCCCCUCUCCCGACUCC 19 14212
BCLllA-12029 + GCGGCCCCUCUCCCGACUCC 20 14213
BCLllA-12030 + CGCGGCCCCUCUCCCGACUCC 21 14214
BCLllA-12031 + CCGCGGCCCCUCUCCCGACUCC 22 14215
BCLllA-12032 + GCCGCGGCCCCUCUCCCGACUCC 23 14216
BCLllA-12033 + CGCCGCGGCCCCUCUCCCGACUCC 24 14217
BCLllA-12034 + GGCAGCGCCCAAGUCUCC 18 14218
BCLllA-12035 + GGGCAGCGCCCAAGUCUCC 19 14219
BCLllA-10093 + AGGGCAGCGCCCAAGUCUCC 20 14220
BCLllA-12036 + AAGGGCAGCGCCCAAGUCUCC 21 14221
BCLllA-12037 + GAAGGGCAGCGCCCAAGUCUCC 22 14222
BCLllA-12038 + GGAAGGGCAGCGCCCAAGUCUCC 23 14223
BCLllA-12039 + CGGAAGGGCAGCGCCCAAGUCUCC 24 14224
BCLllA-12040 + GUCUCACCUCUUUUCUCC 18 14225
BCLllA-12041 + AGUCUCACCUCUUU UCUCC 19 14226
BCLllA-12042 + CAGUCUCACCUCUUUUCUCC 20 14227
BCLllA-12043 + CCAGUCUCACCUCUUUUCUCC 21 14228
BCLllA-12044 + GCCAGUCUCACCUCUUU UCUCC 22 14229
BCLllA-12045 + AGCCAGUCUCACCUCUUUUCUCC 23 14230
BCLllA-12046 + AAGCCAGUCUCACCUCUUUUCUCC 24 14231
BCLllA-12047 + CGGCGCGGGAGGGCAAGC 18 14232
BCLllA-12048 + GCGGCGCGGGAGGGCAAGC 19 14233
BCLllA-12049 + GGCGGCGCGGGAGGGCAAGC 20 14234
BCLllA-12050 + GCCCCGGGCUGGGGAAGC 18 14235
BCLllA-12051 + AGCCCCGGGCUGGGGAAGC 19 14236
BCLllA-12052 + CAGCCCCGGGCUGGGGAAGC 20 14237
BCLllA-12053 + GCAGCCCCGGGCUGGGGAAGC 21 14238
BCLllA-12054 + UGCAGCCCCGGGCUGGGGAAGC 22 14239
BCLllA-12055 + CUGCAGCCCCGGGCUGGGGAAGC 23 14240
BCLllA-12056 + GCUGCAGCCCCGGGCUGGGGAAGC 24 14241
BCLllA-12057 + GCGCCCCCAAGGCCGAGC 18 14242
BCLllA-12058 + GGCGCCCCCAAGGCCGAGC 19 14243
BCLllA-12059 + GGGCGCCCCCAAGGCCGAGC 20 14244
BCLllA-12060 + AGGGCGCCCCCAAGGCCGAGC 21 14245
BCLllA-12061 + GAGGGCGCCCCCAAGGCCGAGC 22 14246
BCLllA-12062 + CGAGGGCGCCCCCAAGGCCGAGC 23 14247
BCLllA-12063 + CCGAGGGCGCCCCCAAGGCCGAGC 24 14248
BCLllA-12064 + CUCCCCGCGUGUGGACGC 18 14249 BCLllA-12065 + GCUCCCCGCGUGUGGACGC 19 14250
BCLllA-12066 + CGCUCCCCGCGUGUGGACGC 20 14251
BCLllA-12067 + UCGCUCCCCGCGUGUGGACGC 21 14252
BCLllA-12068 + CUCGCUCCCCGCGUGUGGACGC 22 14253
BCLllA-12069 + GCUCGCUCCCCGCGUGUGGACGC 23 14254
BCLllA-12070 + CGCUCGCUCCCCGCGUGUGGACGC 24 14255
BCLllA-12071 + GCGCGGGAGGGCAAGCGC 18 14256
BCLllA-12072 + GGCGCGGGAGGGCAAGCGC 19 14257
BCLllA-12073 + CGGCGCGGGAGGGCAAGCGC 20 14258
BCLllA-12074 + CCGCGGACUCAGGAGCGC 18 14259
BCLllA-12075 + UCCGCGGACUCAGGAGCGC 19 14260
BCLllA-10106 + CUCCGCGGACUCAGGAGCGC 20 14261
BCLllA-12076 + ACUCCGCGGACUCAGGAGCGC 21 14262
BCLllA-12077 + GACUCCGCGGACUCAGGAGCGC 22 14263
BCLllA-12078 + CGACUCCGCGGACUCAGGAGCGC 23 14264
BCLllA-12079 + CCGACUCCGCGGACUCAGGAGCGC 24 14265
BCLllA-12080 + CCGAGCCCGCGGCUGCGC 18 14266
BCLllA-12081 + CCCGAGCCCGCGGCUGCGC 19 14267
BCLllA-12082 + CCCCGAGCCCGCGGCUGCGC 20 14268
BCLllA-12083 + GCCCCGAGCCCGCGGCUGCGC 21 14269
BCLllA-12084 + AGCCCCGAGCCCGCGGCUGCGC 22 14270
BCLllA-12085 + AAGCCCCGAGCCCGCGGCUGCGC 23 14271
BCLllA-12086 + AAAGCCCCGAGCCCGCGGCUGCGC 24 14272
BCLllA-12087 + GAGGCAGGCGGCGCAGGC 18 14273
BCLllA-12088 + AGAGGCAGGCGGCGCAGGC 19 14274
BCLllA-10110 + GAGAGGCAGGCGGCGCAGGC 20 14275
BCLllA-12089 + GGAGAGGCAGGCGGCGCAGGC 21 14276
BCLllA-12090 + GGGAGAGGCAGGCGGCGCAGGC 22 14277
BCLllA-12091 + GGGGAGAGGCAGGCGGCGCAGGC 23 14278
BCLllA-12092 + CGGGGAGAGGCAGGCGGCGCAGGC 24 14279
BCLllA-12093 + UCCAGGAGCCCGCGCGGC 18 14280
BCLllA-12094 + CUCCAGGAGCCCGCGCGGC 19 14281
BCLllA-12095 + UCUCCAGGAGCCCGCGCGGC 20 14282
BCLllA-12096 + GUCUCCAGGAGCCCGCGCGGC 21 14283
BCLllA-12097 + AGUCUCCAGGAGCCCGCGCGGC 22 14284
BCLllA-12098 + AAGUCUCCAGGAGCCCGCGCGGC 23 14285
BCLllA-12099 + CAAGUCUCCAGGAGCCCGCGCGGC 24 14286
BCLllA-12100 + GAGGCUGCAGCCCCGGGC 18 14287
BCLllA-12101 + GGAGGCUGCAGCCCCGGGC 19 14288
BCLllA-10115 + GGGAGGCUGCAGCCCCGGGC 20 14289
BCLllA-12102 + CGGGAGGCUGCAGCCCCGGGC 21 14290
BCLllA-12103 + CCGGGAGGCUGCAGCCCCGGGC 22 14291 BCLllA-12104 + ACCGGGAGGCUGCAGCCCCGGGC 23 14292
BCLllA-12105 + CACCGGGAGGCUGCAGCCCCGGGC 24 14293
BCLllA-12106 + UACAGCUCCGCAGCGGGC 18 14294
BCLllA-12107 + UUACAGCUCCGCAGCGGGC 19 14295
BCLllA-12108 + GUUACAGCUCCGCAGCGGGC 20 14296
BCLllA-12109 + AGUUACAGCUCCGCAGCGGGC 21 14297
BCLllA-12110 + AAGUUACAGCUCCGCAGCGGGC 22 14298
BCLllA-12111 + CAAGUUACAGCUCCGCAGCGGGC 23 14299
BCLllA-12112 + CCAAGUUACAGCUCCGCAGCGGGC 24 14300
BCLllA-12113 + GGCGGCGCAGGCCGGGGC 18 14301
BCLllA-12114 + AGGCGGCGCAGGCCGGGGC 19 14302
BCLllA-12115 + CAGGCGGCGCAGGCCGGGGC 20 14303
BCLllA-12116 + GCAGGCGGCGCAGGCCGGGGC 21 14304
BCLllA-12117 + GGCAGGCGGCGCAGGCCGGGGC 22 14305
BCLllA-12118 + AGGCAGGCGGCGCAGGCCGGGGC 23 14306
BCLllA-12119 + GAGGCAGGCGGCGCAGGCCGGGGC 24 14307
BCLllA-12120 + UUGCAAAACUGGCGGGGC 18 14308
BCLllA-12121 + U UUGCAAAACUGGCGGGGC 19 14309
BCLllA-10116 + U UUUGCAAAACUGGCGGGGC 20 14310
BCLllA-12122 + AUUUUGCAAAACUGGCGGGGC 21 14311
BCLllA-12123 + UAUUUUGCAAAACUGGCGGGGC 22 14312
BCLllA-12124 + UUAUUUUGCAAAACUGGCGGGGC 23 14313
BCLllA-12125 + AUUAUUUUGCAAAACUGGCGGGGC 24 14314
BCLllA-12126 + CAAACACCCACCUCUGGC 18 14315
BCLllA-12127 + ACAAACACCCACCUCUGGC 19 14316
BCLllA-10118 + GACAAACACCCACCUCUGGC 20 14317
BCLllA-12128 + GGACAAACACCCACCUCUGGC 21 14318
BCLllA-12129 + GGGACAAACACCCACCUCUGGC 22 14319
BCLllA-12130 + CGGGACAAACACCCACCUCUGGC 23 14320
BCLllA-12131 + GCGGGACAAACACCCACCUCUGGC 24 14321
BCLllA-12132 + GCGCUCGGGAAACUUUGC 18 14322
BCLllA-12133 + UGCGCUCGGGAAACUUUGC 19 14323
BCLllA-12134 + CUGCGCUCGGGAAACUUUGC 20 14324
BCLllA-12135 + GCUGCGCUCGGGAAACUUUGC 21 14325
BCLllA-12136 + GGCUGCGCUCGGGAAACUUUGC 22 14326
BCLllA-12137 + CGGCUGCGCUCGGGAAACUUUGC 23 14327
BCLllA-12138 + GCGGCUGCGCUCGGGAAACUUUGC 24 14328
BCLllA-12139 + UCCCGACUCCGCGGACUC 18 14329
BCLllA-12140 + CUCCCGACUCCGCGGACUC 19 14330
BCLllA-10122 + UCUCCCGACUCCGCGGACUC 20 14331
BCLllA-12141 + CUCUCCCGACUCCGCGGACUC 21 14332
BCLllA-12142 + CCUCUCCCGACUCCGCGGACUC 22 14333 BCLllA-12143 + CCCUCUCCCGACUCCGCGGACUC 23 14334
BCLllA-12144 + CCCCUCUCCCGACUCCGCGGACUC 24 14335
BCLllA-12145 + GAGCCCGCGGCUGCGCUC 18 14336
BCLllA-12146 + CGAGCCCGCGGCUGCGCUC 19 14337
BCLllA-10126 + CCGAGCCCGCGGCUGCGCUC 20 14338
BCLllA-12147 + CCCGAGCCCGCGGCUGCGCUC 21 14339
BCLllA-12148 + CCCCGAGCCCGCGGCUGCGCUC 22 14340
BCLllA-12149 + GCCCCGAGCCCGCGGCUGCGCUC 23 14341
BCLllA-12150 + AGCCCCGAGCCCGCGGCUGCGCUC 24 14342
BCLllA-12151 + AGCCAGGUAGAGUUGCUC 18 14343
BCLllA-12152 + AAGCCAGGUAGAGUUGCUC 19 14344
BCLllA-12153 + GAAGCCAGGUAGAGUUGCUC 20 14345
BCLllA-12154 + GGAAGCCAGGUAGAGU UGCUC 21 14346
BCLllA-12155 + GGGAAGCCAGGUAGAGUUGCUC 22 14347
BCLllA-12156 + AGGGAAGCCAGGUAGAGUUGCUC 23 14348
BCLllA-12157 + GAGGGAAGCCAGGUAGAGUUGCUC 24 14349
BCLllA-12158 + GGGCAGCGCCCAAGUCUC 18 14350
BCLllA-12159 + AGGGCAGCGCCCAAGUCUC 19 14351
BCLllA-12160 + AAGGGCAGCGCCCAAGUCUC 20 14352
BCLllA-12161 + GAAGGGCAGCGCCCAAGUCUC 21 14353
BCLllA-12162 + GGAAGGGCAGCGCCCAAGUCUC 22 14354
BCLllA-12163 + CGGAAGGGCAGCGCCCAAGUCUC 23 14355
BCLllA-12164 + CCGGAAGGGCAGCGCCCAAGUCUC 24 14356
BCLllA-12165 + UUUGGAGGGCUGCGGGUC 18 14357
BCLllA-12166 + GUUUGGAGGGCUGCGGGUC 19 14358
BCLllA-10129 + AGUUUGGAGGGCUGCGGGUC 20 14359
BCLllA-12167 + AAGUUUGGAGGGCUGCGGGUC 21 14360
BCLllA-12168 + UAAGUUUGGAGGGCUGCGGGUC 22 14361
BCLllA-12169 + CUAAGUUUGGAGGGCUGCGGGUC 23 14362
BCLllA-12170 + CCUAAGUUUGGAGGGCUGCGGGUC 24 14363
BCLllA-12171 + CGGCGGAAAGGAGGAAAG 18 14364
BCLllA-12172 + GCGGCGGAAAGGAGGAAAG 19 14365
BCLllA-10136 + AGCGGCGGAAAGGAGGAAAG 20 14366
BCLllA-12173 + AAGCGGCGGAAAGGAGGAAAG 21 14367
BCLllA-12174 + A AAG CGG CG G AAAG G AG G AAAG 22 14368
BCLllA-12175 + U A A AG CG G CG G A A AG G AG G A A AG 23 14369
BCLllA-12176 + AUAAAGCGGCGGAAAGGAGGAAAG 24 14370
BCLllA-12177 + AAA U AAAG CG G CG G AAAG 18 14371
BCLllA-12178 + GAAAUAAAGCGGCGGAAAG 19 14372
BCLllA-12179 + AGAAAUAAAGCGGCGGAAAG 20 14373
BCLllA-12180 + GAG AAA U A A AG CG G CGG AAAG 21 14374
BCLllA-12181 + AGAGAAAUAAAGCGGCGGAAAG 22 14375 BCLllA-12182 + AAG AG A A A U A A AG CG G CG G A A AG 23 14376
BCLllA-12183 + AAAGAGAAAUAAAGCGGCGGAAAG 24 14377
BCLllA-12184 + CCCGCGCGGCCUGGAAAG 18 14378
BCLllA-12185 + GCCCGCGCGGCCUGGAAAG 19 14379
BCLllA-10137 + AGCCCGCGCGGCCUGGAAAG 20 14380
BCLllA-12186 + GAGCCCGCGCGGCCUGGAAAG 21 14381
BCLllA-12187 + GGAGCCCGCGCGGCCUGGAAAG 22 14382
BCLllA-12188 + AGGAGCCCGCGCGGCCUGGAAAG 23 14383
BCLllA-12189 + CAGGAGCCCGCGCGGCCUGGAAAG 24 14384
BCLllA-12190 + AAG AAAAAU CACCCG AAG 18 14385
BCLllA-12191 + AAAG AAAAAU CACCCG AAG 19 14386
BCLllA-12192 + CAAAG AAAAAU CACCCG AAG 20 14387
BCLllA-12193 + GCAAAG AAAAAU CACCCG AAG 21 14388
BCLllA-12194 + AG CAAAG AAAAAU CACCCG AAG 22 14389
BCLllA-12195 + CAG CAAAG AAAAAU CACCCG AAG 23 14390
BCLllA-12196 + ACAGCAAAGAAAAAUCACCCGAAG 24 14391
BCLllA-12197 + AG CCG G CACA AAAGG CAG 18 14392
BCLllA-12198 + GAGCCGGCA C A A A AG G C AG 19 14393
BCLllA-10144 + GGAGCCGGCA C A A A AG G C AG 20 14394
BCLllA-12199 + AG GAG CCGG CAC AAAAG G CAG 21 14395
BCLllA-12200 + GAGGAGCCGG C AC A AAAG G CAG 22 14396
BCLllA-12201 + CG AG G AG CCGG C ACAAAAG G CAG 23 14397
BCLllA-12202 + GCGAGGAGCCGGCACAAAAGGCAG 24 14398
BCLllA-12203 + GCGGAAAGGAGGAAAGAG 18 14399
BCLllA-12204 + GGCGGAAAGGAGGAAAGAG 19 14400
BCLllA-12205 + CGGCGGAAAGGAGGAAAGAG 20 14401
BCLllA-12206 + GCGGCGGAAAGGAGGAAAGAG 21 14402
BCLllA-12207 + AGCGGCGGAAAGGAGGAAAGAG 22 14403
BCLllA-12208 + A AG CGG CG G AAAG G AG G AAAG AG 23 14404
BCLllA-12209 + AAAGCGGCGGAAAGGAGGAAAGAG 24 14405
BCLllA-12210 + AUCACCCGAAGUUGAGAG 18 14406
BCLllA-12211 + AAUCACCCGAAGUUGAGAG 19 14407
BCLllA-12212 + AAAU CACCCG AAG U UG AG AG 20 14408
BCLllA-12213 + AAAAUCACCCGAAGUUGAGAG 21 14409
BCLllA-12214 + AAAAAU CACCCG AAG U UG AG AG 22 14410
BCLllA-12215 + GAAAAAUCACCCGAAGU UGAGAG 23 14411
BCLllA-12216 + AG AAAAAU CACCCG AAG U UG AG AG 24 14412
BCLllA-12217 + CGGGAAACUUUGCCCGAG 18 14413
BCLllA-12218 + UCGGGAAACUUUGCCCGAG 19 14414
BCLllA-12219 + CUCGGGAAACUUUGCCCGAG 20 14415
BCLllA-12220 + GCUCGGGAAACUUUGCCCGAG 21 14416
BCLllA-12221 + CGCUCGGGAAACUUUGCCCGAG 22 14417 BCLllA-12222 + GCGCUCGGGAAACUUUGCCCGAG 23 14418
BCLllA-12223 + UGCGCUCGGGAAACUUUGCCCGAG 24 14419
BCLllA-12224 + AGCUCCGCAGCGGGCGAG 18 14420
BCLllA-12225 + CAGCUCCGCAGCGGGCGAG 19 14421
BCLllA-10148 + ACAGCUCCGCAGCGGGCGAG 20 14422
BCLllA-12226 + UACAGCUCCGCAGCGGGCGAG 21 14423
BCLllA-12227 + UUACAGCUCCGCAGCGGGCGAG 22 14424
BCLllA-12228 + GUUACAGCUCCGCAGCGGGCGAG 23 14425
BCLllA-12229 + AGUUACAGCUCCGCAGCGGGCGAG 24 14426
BCLllA-12230 + CGCAGCGGGCGAGGGGAG 18 14427
BCLllA-12231 + CCGCAGCGGGCGAGGGGAG 19 14428
BCLllA-12232 + UCCGCAGCGGGCGAGGGGAG 20 14429
BCLllA-12233 + CUCCGCAGCGGGCGAGGGGAG 21 14430
BCLllA-12234 + GCUCCGCAGCGGGCGAGGGGAG 22 14431
BCLllA-12235 + AGCUCCGCAGCGGGCGAGGGGAG 23 14432
BCLllA-12236 + CAGCUCCGCAGCGGGCGAGGGGAG 24 14433
BCLllA-12237 + CCAU UUUCUUACGGUGAG 18 14434
BCLllA-12238 + CCCAUU UUCUUACGGUGAG 19 14435
BCLllA-10154 + CCCCAUU UUCUUACGGUGAG 20 14436
BCLllA-12239 + CCCCCAUUU UCUUACGGUGAG 21 14437
BCLllA-12240 + CCCCCCAUUUUCUUACGGUGAG 22 14438
BCLllA-12241 + CCCCCCCAUU UUCU UACGGUGAG 23 14439
BCLllA-12242 + ACCCCCCCAUUU UCUUACGGUGAG 24 14440
BCLllA-12243 + CCUGGAAAGAGGGGACCG 18 14441
BCLllA-12244 + GCCUGGAAAGAGGGGACCG 19 14442
BCLllA-10159 + GGCCUGGAAAGAGGGGACCG 20 14443
BCLllA-12245 + CGGCCUGGAAAGAGGGGACCG 21 14444
BCLllA-12246 + GCGGCCUGGAAAGAGGGGACCG 22 14445
BCLllA-12247 + CGCGGCCUGGAAAGAGGGGACCG 23 14446
BCLllA-12248 + GCGCGGCCUGGAAAGAGGGGACCG 24 14447
BCLllA-12249 + CUCGGGAAACUU UGCCCG 18 14448
BCLllA-12250 + GCUCGGGAAACUU UGCCCG 19 14449
BCLllA-10163 + CGCUCGGGAAACUUUGCCCG 20 14450
BCLllA-12251 + GCGCUCGGGAAACUUUGCCCG 21 14451
BCLllA-12252 + UGCGCUCGGGAAACUUUGCCCG 22 14452
BCLllA-12253 + CUGCGCUCGGGAAACUUUGCCCG 23 14453
BCLllA-12254 + GCUGCGCUCGGGAAACU UUGCCCG 24 14454
BCLllA-12255 + G A A A AG AG AAA U A A AG CG 18 14455
BCLllA-12256 + CGAAAAGAGAAAUAAAGCG 19 14456
BCLllA-12257 + U CG A A A AG AG AAA U A A AG CG 20 14457
BCLllA-12258 + U UCGAAAAGAGAAAUAAAGCG 21 14458
BCLllA-12259 + U UUCGAAAAGAGAAAUAAAGCG 22 14459 BCLllA-12260 + U U U U CG AAAAG AG AAAU AAAGCG 23 14460
BCLllA-12261 + CU UUUCGAAAAGAGAAAUAAAGCG 24 14461
BCLllA-12262 + UCCGCGGACUCAGGAGCG 18 14462
BCLllA-12263 + CUCCGCGGACUCAGGAGCG 19 14463
BCLllA-12264 + ACUCCGCGGACUCAGGAGCG 20 14464
BCLllA-12265 + GACUCCGCGGACUCAGGAGCG 21 14465
BCLllA-12266 + CGACUCCGCGGACUCAGGAGCG 22 14466
BCLllA-12267 + CCGACUCCGCGGACUCAGGAGCG 23 14467
BCLllA-12268 + CCCGACUCCGCGGACUCAGGAGCG 24 14468
BCLllA-12269 + CGCGGGAGGGCAAGCGCG 18 14469
BCLllA-12270 + GCGCGGGAGGGCAAGCGCG 19 14470
BCLllA-10178 + GGCGCGGGAGGGCAAGCGCG 20 14471
BCLllA-12271 + ACAGCUCCGCAGCGGGCG 18 14472
BCLllA-12272 + UACAGCUCCGCAGCGGGCG 19 14473
BCLllA-10180 + UUACAGCUCCGCAGCGGGCG 20 14474
BCLllA-12273 + GUUACAGCUCCGCAGCGGGCG 21 14475
BCLllA-12274 + AGUUACAGCUCCGCAGCGGGCG 22 14476
BCLllA-12275 + AAGUUACAGCUCCGCAGCGGGCG 23 14477
BCLllA-12276 + CAAGUUACAGCUCCGCAGCGGGCG 24 14478
BCLllA-12277 + GCUGGGGAAGCGCGGGCG 18 14479
BCLllA-12278 + GGCUGGGGAAGCGCGGGCG 19 14480
BCLllA-12279 + GGGCUGGGGAAGCGCGGGCG 20 14481
BCLllA-12280 + CGGGCUGGGGAAGCGCGGGCG 21 14482
BCLllA-12281 + CCGGGCUGGGGAAGCGCGGGCG 22 14483
BCLllA-12282 + CCCGGGCUGGGGAAGCGCGGGCG 23 14484
BCLllA-12283 + CCCCGGGCUGGGGAAGCGCGGGCG 24 14485
BCLllA-12284 + UGCAAAACUGGCGGGGCG 18 14486
BCLllA-12285 + UUGCAAAACUGGCGGGGCG 19 14487
BCLllA-10181 + U UUGCAAAACUGGCGGGGCG 20 14488
BCLllA-12286 + U UUUGCAAAACUGGCGGGGCG 21 14489
BCLllA-12287 + AUUUUGCAAAACUGGCGGGGCG 22 14490
BCLllA-12288 + UAUUUUGCAAAACUGGCGGGGCG 23 14491
BCLllA-12289 + U UAUUUUGCAAAACUGGCGGGGCG 24 14492
BCLllA-12290 + AAUAAAGCGGCGGAAAGG 18 14493
BCLllA-12291 + AAA U A A AG CG G CG G A A AG G 19 14494
BCLllA-10185 + G AAA U A A AG CG G CG G A A AG G 20 14495
BCLllA-12292 + AGAAAUAAAGCGGCGGAAAGG 21 14496
BCLllA-12293 + G AG A A A U A A AG CG G CG G A A AG G 22 14497
BCLllA-12294 + AGAGAAAUAAAGCGGCGGAAAGG 23 14498
BCLllA-12295 + AAGAGAAAUAAAGCGGCGGAAAGG 24 14499
BCLllA-12296 + CCGAGGGCGCCCCCAAGG 18 14500
BCLllA-12297 + CCCGAGGGCGCCCCCAAGG 19 14501 BCLllA-12298 + GCCCGAGGGCGCCCCCAAGG 20 14502
BCLllA-12299 + GGCCCGAGGGCGCCCCCAAGG 21 14503
BCLllA-12300 + GGGCCCGAGGGCGCCCCCAAGG 22 14504
BCLllA-12301 + GGGGCCCGAGGGCGCCCCCAAGG 23 14505
BCLllA-12302 + CGGGGCCCGAGGGCGCCCCCAAGG 24 14506
BCLllA-12303 + AGAGGCAGGCGGCGCAGG 18 14507
BCLllA-12304 + GAGAGGCAGGCGGCGCAGG 19 14508
BCLllA-12305 + GGAGAGGCAGGCGGCGCAGG 20 14509
BCLllA-12306 + GGGAGAGGCAGGCGGCGCAGG 21 14510
BCLllA-12307 + GGGGAGAGGCAGGCGGCGCAGG 22 14511
BCLllA-12308 + CGGGGAGAGGCAGGCGGCGCAGG 23 14512
BCLllA-12309 + CCGGGGAGAGGCAGGCGGCGCAGG 24 14513
BCLllA-12310 + GCAGCGGGCGAGGGGAGG 18 14514
BCLllA-12311 + CGCAGCGGGCGAGGGGAGG 19 14515
BCLllA-10190 + CCGCAGCGGGCGAGGGGAGG 20 14516
BCLllA-12312 + UCCGCAGCGGGCGAGGGGAGG 21 14517
BCLllA-12313 + CUCCGCAGCGGGCGAGGGGAGG 22 14518
BCLllA-12314 + GCUCCGCAGCGGGCGAGGGGAGG 23 14519
BCLllA-12315 + AGCUCCGCAGCGGGCGAGGGGAGG 24 14520
BCLllA-12316 + GGAGGGCUGCGGGUCCGG 18 14521
BCLllA-12317 + UGGAGGGCUGCGGGUCCGG 19 14522
BCLllA-12318 + UUGGAGGGCUGCGGGUCCGG 20 14523
BCLllA-12319 + UUUGGAGGGCUGCGGGUCCGG 21 14524
BCLllA-12320 + GUUUGGAGGGCUGCGGGUCCGG 22 14525
BCLllA-12321 + AGUUUGGAGGGCUGCGGGUCCGG 23 14526
BCLllA-12322 + AAGUUUGGAGGGCUGCGGGUCCGG 24 14527
BCLllA-12323 + AAAAG AG AAAU AAAG CGG 18 14528
BCLllA-12324 + G AAAAG AG AAAU AAAG CGG 19 14529
BCLllA-10193 + CGAAAAGAGAAAUAAAGCGG 20 14530
BCLllA-12325 + UCGAAAAGAGAAAUAAAGCGG 21 14531
BCLllA-12326 + UUCGAAAAGAGAAAUAAAGCGG 22 14532
BCLllA-12327 + UUUCGAAAAGAGAAAUAAAGCGG 23 14533
BCLllA-12328 + U U U U CG AAAAG AG AAAU AAAG CGG 24 14534
BCLllA-12329 + GUUACAGCUCCGCAGCGG 18 14535
BCLllA-12330 + AGUUACAGCUCCGCAGCGG 19 14536
BCLllA-12331 + AAGUUACAGCUCCGCAGCGG 20 14537
BCLllA-12332 + CAAGUUACAGCUCCGCAGCGG 21 14538
BCLllA-12333 + CCAAGUUACAGCUCCGCAGCGG 22 14539
BCLllA-12334 + UCCAAGUUACAGCUCCGCAGCGG 23 14540
BCLllA-12335 + CUCCAAGUUACAGCUCCGCAGCGG 24 14541
BCLllA-12336 + CGGGCUGGGGAAGCGCGG 18 14542
BCLllA-12337 + CCGGGCUGGGGAAGCGCGG 19 14543 BCLllA-12338 + CCCGGGCUGGGGAAGCGCGG 20 14544
BCLllA-12339 + CCCCGGGCUGGGGAAGCGCGG 21 14545
BCLllA-12340 + GCCCCGGGCUGGGGAAGCGCGG 22 14546
BCLllA-12341 + AGCCCCGGGCUGGGGAAGCGCGG 23 14547
BCLllA-12342 + CAGCCCCGGGCUGGGGAAGCGCGG 24 14548
BCLllA-12343 + CUGGGGAAGCGCGGGCGG 18 14549
BCLllA-12344 + GCUGGGGAAGCGCGGGCGG 19 14550
BCLllA-10197 + GGCUGGGGAAGCGCGGGCGG 20 14551
BCLllA-12345 + GGGCUGGGGAAGCGCGGGCGG 21 14552
BCLllA-12346 + CGGGCUGGGGAAGCGCGGGCGG 22 14553
BCLllA-12347 + CCGGGCUGGGGAAGCGCGGGCGG 23 14554
BCLllA-12348 + CCCGGGCUGGGGAAGCGCGGGCGG 24 14555
BCLllA-12349 + GCAAAACUGGCGGGGCGG 18 14556
BCLllA-12350 + UGCAAAACUGGCGGGGCGG 19 14557
BCLllA-10198 + UUGCAAAACUGGCGGGGCGG 20 14558
BCLllA-12351 + UUUGCAAAACUGGCGGGGCGG 21 14559
BCLllA-12352 + UUUUGCAAAACUGGCGGGGCGG 22 14560
BCLllA-12353 + AUUUUGCAAAACUGGCGGGGCGG 23 14561
BCLllA-12354 + UAUUUUGCAAAACUGGCGGGGCGG 24 14562
BCLllA-12355 + UGGAAAGAGGGGACCGGG 18 14563
BCLllA-12356 + CUGGAAAGAGGGGACCGGG 19 14564
BCLllA-12357 + CCUGGAAAGAGGGGACCGGG 20 14565
BCLllA-12358 + GCCUGGAAAGAGGGGACCGGG 21 14566
BCLllA-12359 + GGCCUGGAAAGAGGGGACCGGG 22 14567
BCLllA-12360 + CGGCCUGGAAAGAGGGGACCGGG 23 14568
BCLllA-12361 + GCGGCCUGGAAAGAGGGGACCGGG 24 14569
BCLllA-12362 + GGAGGCUGCAGCCCCGGG 18 14570
BCLllA-12363 + GGGAGGCUGCAGCCCCGGG 19 14571
BCLllA-12364 + CGGGAGGCUGCAGCCCCGGG 20 14572
BCLllA-12365 + CCGGGAGGCUGCAGCCCCGGG 21 14573
BCLllA-12366 + ACCGGGAGGCUGCAGCCCCGGG 22 14574
BCLllA-12367 + CACCGGGAGGCUGCAGCCCCGGG 23 14575
BCLllA-12368 + GCACCGGGAGGCUGCAGCCCCGGG 24 14576
BCLllA-12369 + GGGCUGGGGAAGCGCGGG 18 14577
BCLllA-12370 + CGGGCUGGGGAAGCGCGGG 19 14578
BCLllA-10203 + CCGGGCUGGGGAAGCGCGGG 20 14579
BCLllA-12371 + CCCGGGCUGGGGAAGCGCGGG 21 14580
BCLllA-12372 + CCCCGGGCUGGGGAAGCGCGGG 22 14581
BCLllA-12373 + GCCCCGGGCUGGGGAAGCGCGGG 23 14582
BCLllA-12374 + AGCCCCGGGCUGGGGAAGCGCGGG 24 14583
BCLllA-12375 + CAAAACUGGCGGGGCGGG 18 14584
BCLllA-12376 + GCAAAACUGGCGGGGCGGG 19 14585 BCLllA-10204 + UGCAAAACUGGCGGGGCGGG 20 14586
BCLllA-12377 + U UGCAAAACUGGCGGGGCGGG 21 14587
BCLllA-12378 + UUUGCAAAACUGGCGGGGCGGG 22 14588
BCLllA-12379 + UUUUGCAAAACUGGCGGGGCGGG 23 14589
BCLllA-12380 + AUUUUGCAAAACUGGCGGGGCGGG 24 14590
BCLllA-12381 + U UUUGCAAAACUGGCGGG 18 14591
BCLllA-12382 + AUUUUGCAAAACUGGCGGG 19 14592
BCLllA-12383 + UAUUUUGCAAAACUGGCGGG 20 14593
BCLllA-12384 + UUAUUUUGCAAAACUGGCGGG 21 14594
BCLllA-12385 + AUUAUUUUGCAAAACUGGCGGG 22 14595
BCLllA-12386 + CAUUAUUUUGCAAAACUGGCGGG 23 14596
BCLllA-12387 + UCAUUAUUUUGCAAAACUGGCGGG 24 14597
BCLllA-12388 + GCGUGUGGACGCCAGGGG 18 14598
BCLllA-12389 + CGCGUGUGGACGCCAGGGG 19 14599
BCLllA-12390 + CCGCGUGUGGACGCCAGGGG 20 14600
BCLllA-12391 + CCCGCGUGUGGACGCCAGGGG 21 14601
BCLllA-12392 + CCCCGCGUGUGGACGCCAGGGG 22 14602
BCLllA-12393 + UCCCCGCGUGUGGACGCCAGGGG 23 14603
BCLllA-12394 + CUCCCCGCGUGUGGACGCCAGGGG 24 14604
BCLllA-12395 + AAAACUGGCGGGGCGGGG 18 14605
BCLllA-12396 + CAAAACUGGCGGGGCGGGG 19 14606
BCLllA-10207 + GCAAAACUGGCGGGGCGGGG 20 14607
BCLllA-12397 + UGCAAAACUGGCGGGGCGGGG 21 14608
BCLllA-12398 + U UGCAAAACUGGCGGGGCGGGG 22 14609
BCLllA-12399 + U UUGCAAAACUGGCGGGGCGGGG 23 14610
BCLllA-12400 + U UUUGCAAAACUGGCGGGGCGGGG 24 14611
BCLllA-12401 + UUUGCAAAACUGGCGGGG 18 14612
BCLllA-12402 + UUUUGCAAAACUGGCGGGG 19 14613
BCLllA-10208 + AUUUUGCAAAACUGGCGGGG 20 14614
BCLllA-12403 + UAUUUUGCAAAACUGGCGGGG 21 14615
BCLllA-12404 + U UAUUUUGCAAAACUGGCGGGG 22 14616
BCLllA-12405 + AUUAUUUUGCAAAACUGGCGGGG 23 14617
BCLllA-12406 + CAUUAUUUUGCAAAACUGGCGGGG 24 14618
BCLllA-12407 + CGGGCGAGGGGAGGUGGG 18 14619
BCLllA-12408 + GCGGGCGAGGGGAGGUGGG 19 14620
BCLllA-10213 + AGCGGGCGAGGGGAGGUGGG 20 14621
BCLllA-12409 + CAGCGGGCGAGGGGAGGUGGG 21 14622
BCLllA-12410 + GCAGCGGGCGAGGGGAGGUGGG 22 14623
BCLllA-12411 + CGCAGCGGGCGAGGGGAGGUGGG 23 14624
BCLllA-12412 + CCGCAGCGGGCGAGGGGAGGUGGG 24 14625
BCLllA-12413 + AUUAUUUUGCAAAACUGG 18 14626
BCLllA-12414 + CAUUAUUUUGCAAAACUGG 19 14627 BCLllA-10215 + UCAUUAUUUUGCAAAACUGG 20 14628
BCLllA-12415 + UUCAUUAUUUUGCAAAACUGG 21 14629
BCLllA-12416 + GUUCAUUAUUUUGCAAAACUGG 22 14630
BCLllA-12417 + UGUUCAUUAUUU UGCAAAACUGG 23 14631
BCLllA-12418 + UUGUUCAUUAUU UUGCAAAACUGG 24 14632
BCLllA-12419 + ACAAACACCCACCUCUGG 18 14633
BCLllA-12420 + GACAAACACCCACCUCUGG 19 14634
BCLllA-12421 + GGACAAACACCCACCUCUGG 20 14635
BCLllA-12422 + GGGACAAACACCCACCUCUGG 21 14636
BCLllA-12423 + CGGGACAAACACCCACCUCUGG 22 14637
BCLllA-12424 + GCGGGACAAACACCCACCUCUGG 23 14638
BCLllA-12425 + AGCGGGACAAACACCCACCUCUGG 24 14639
BCLllA-12426 + GCGGGCGAGGGGAGGUGG 18 14640
BCLllA-12427 + AGCGGGCGAGGGGAGGUGG 19 14641
BCLllA-12428 + CAGCGGGCGAGGGGAGGUGG 20 14642
BCLllA-12429 + GCAGCGGGCGAGGGGAGGUGG 21 14643
BCLllA-12430 + CGCAGCGGGCGAGGGGAGGUGG 22 14644
BCLllA-12431 + CCGCAGCGGGCGAGGGGAGGUGG 23 14645
BCLllA-12432 + UCCGCAGCGGGCGAGGGGAGGUGG 24 14646
BCLllA-12433 + CAUUAUUUUGCAAAACUG 18 14647
BCLllA-12434 + UCAUUAUUUUGCAAAACUG 19 14648
BCLllA-12435 + UUCAUUAUUUUGCAAAACUG 20 14649
BCLllA-12436 + GUUCAUUAUUUUGCAAAACUG 21 14650
BCLllA-12437 + UGUUCAUUAUUU UGCAAAACUG 22 14651
BCLllA-12438 + UUGUUCAUUAUU UUGCAAAACUG 23 14652
BCLllA-12439 + AUUGUUCAUUAUUUUGCAAAACUG 24 14653
BCLllA-12440 + GGCUGCAGCCCCGGGCUG 18 14654
BCLllA-12441 + AGGCUGCAGCCCCGGGCUG 19 14655
BCLllA-10226 + GAGGCUGCAGCCCCGGGCUG 20 14656
BCLllA-12442 + GGAGGCUGCAGCCCCGGGCUG 21 14657
BCLllA-12443 + GGGAGGCUGCAGCCCCGGGCUG 22 14658
BCLllA-12444 + CGGGAGGCUGCAGCCCCGGGCUG 23 14659
BCLllA-12445 + CCGGGAGGCUGCAGCCCCGGGCUG 24 14660
BCLllA-12446 + GCCACUUUCUCACUAUUG 18 14661
BCLllA-12447 + UGCCACUU UCUCACUAUUG 19 14662
BCLllA-10230 + GUGCCACU UUCUCACUAUUG 20 14663
BCLllA-12448 + AGUGCCACUUUCUCACUAUUG 21 14664
BCLllA-12449 + CAGUGCCACUUUCUCACUAUUG 22 14665
BCLllA-12450 + ACAGUGCCACU UUCUCACUAUUG 23 14666
BCLllA-12451 + CACAGUGCCACUUUCUCACUAUUG 24 14667
BCLllA-12452 + GAAUCCAGCCUAAGU UUG 18 14668
BCLllA-12453 + GGAAUCCAGCCUAAGUU UG 19 14669 BCLllA-12454 + CGGAAUCCAGCCUAAGUUUG 20 14670
BCLllA-12455 + GCGGAAUCCAGCCUAAGUUUG 21 14671
BCLllA-12456 + CGCGGAAUCCAGCCUAAGUUUG 22 14672
BCLllA-12457 + ACGCGGAAUCCAGCCUAAGUUUG 23 14673
BCLllA-12458 + AACGCGGAAUCCAGCCUAAGUUUG 24 14674
BCLllA-12459 + CUCCCGACUCCGCGGACU 18 14675
BCLllA-12460 + UCUCCCGACUCCGCGGACU 19 14676
BCLllA-12461 + CUCUCCCGACUCCGCGGACU 20 14677
BCLllA-12462 + CCUCUCCCGACUCCGCGGACU 21 14678
BCLllA-12463 + CCCUCUCCCGACUCCGCGGACU 22 14679
BCLllA-12464 + CCCCUCUCCCGACUCCGCGGACU 23 14680
BCLllA-12465 + GCCCCUCUCCCGACUCCGCGGACU 24 14681
BCLllA-12466 + CGAGCCCGCGGCUGCGCU 18 14682
BCLllA-12467 + CCGAGCCCGCGGCUGCGCU 19 14683
BCLllA-10239 + CCCGAGCCCGCGGCUGCGCU 20 14684
BCLllA-12468 + CCCCGAGCCCGCGGCUGCGCU 21 14685
BCLllA-12469 + GCCCCGAGCCCGCGGCUGCGCU 22 14686
BCLllA-12470 + AGCCCCGAGCCCGCGGCUGCGCU 23 14687
BCLllA-12471 + AAGCCCCGAGCCCGCGGCUGCGCU 24 14688
BCLllA-12472 + AGGCUGCAGCCCCGGGCU 18 14689
BCLllA-12473 + GAGGCUGCAGCCCCGGGCU 19 14690
BCLllA-10240 + GGAGGCUGCAGCCCCGGGCU 20 14691
BCLllA-12474 + GGGAGGCUGCAGCCCCGGGCU 21 14692
BCLllA-12475 + CGGGAGGCUGCAGCCCCGGGCU 22 14693
BCLllA-12476 + CCGGGAGGCUGCAGCCCCGGGCU 23 14694
BCLllA-12477 + ACCGGGAGGCUGCAGCCCCGGGCU 24 14695
BCLllA-12478 + GCGGAAUCCAGCCUAAGU 18 14696
BCLllA-12479 + CGCGGAAUCCAGCCUAAGU 19 14697
BCLllA-12480 + ACGCGGAAUCCAGCCUAAGU 20 14698
BCLllA-12481 + AACGCGGAAUCCAGCCUAAGU 21 14699
BCLllA-12482 + CAACGCGGAAUCCAGCCUAAGU 22 14700
BCLllA-12483 + GCAACGCGGAAUCCAGCCUAAGU 23 14701
BCLllA-12484 + GGCAACGCGGAAUCCAGCCUAAGU 24 14702
BCLllA-12485 + CAUUUUCUUACGGUGAGU 18 14703
BCLllA-12486 + CCAU UUUCUUACGGUGAGU 19 14704
BCLllA-10244 + CCCAUU UUCUUACGGUGAGU 20 14705
BCLllA-12487 + CCCCAUU UUCUUACGGUGAGU 21 14706
BCLllA-12488 + CCCCCAUUU UCUUACGGUGAGU 22 14707
BCLllA-12489 + CCCCCCAUUUUCUUACGGUGAGU 23 14708
BCLllA-12490 + CCCCCCCAUU UUCU UACGGUGAGU 24 14709
BCLllA-12491 + CGCGCUCGCUCCCCGCGU 18 14710
BCLllA-12492 + CCGCGCUCGCUCCCCGCGU 19 14711 BCLllA-12493 + GCCGCGCUCGCUCCCCGCGU 20 14712
BCLllA-12494 + CGCCGCGCUCGCUCCCCGCGU 21 14713
BCLllA-12495 + CCGCCGCGCUCGCUCCCCGCGU 22 14714
BCLllA-12496 + GCCGCCGCGCUCGCUCCCCGCGU 23 14715
BCLllA-12497 + CGCCGCCGCGCUCGCUCCCCGCGU 24 14716
BCLllA-12498 + CAGCGGGCGAGGGGAGGU 18 14717
BCLllA-12499 + GCAGCGGGCGAGGGGAGGU 19 14718
BCLllA-10247 + CGCAGCGGGCGAGGGGAGGU 20 14719
BCLllA-12500 + CCGCAGCGGGCGAGGGGAGGU 21 14720
BCLllA-12501 + UCCGCAGCGGGCGAGGGGAGGU 22 14721
BCLllA-12502 + CUCCGCAGCGGGCGAGGGGAGGU 23 14722
BCLllA-12503 + GCUCCGCAGCGGGCGAGGGGAGGU 24 14723
BCLllA-12504 + GUUUGGAGGGCUGCGGGU 18 14724
BCLllA-12505 + AGUUUGGAGGGCUGCGGGU 19 14725
BCLllA-12506 + AAGUUUGGAGGGCUGCGGGU 20 14726
BCLllA-12507 + UAAGUUUGGAGGGCUGCGGGU 21 14727
BCLllA-12508 + CU AAGUUUGGAGGGCUGCGGGU 22 14728
BCLllA-12509 + CCUAAGUUUGGAGGGCUGCGGGU 23 14729
BCLllA-12510 + GCCUAAGUUUGGAGGGCUGCGGGU 24 14730
BCLllA-12511 + UGCCACUU UCUCACUAUU 18 14731
BCLllA-12512 + GUGCCACUUUCUCACUAUU 19 14732
BCLllA-12513 + AGUGCCACUU UCUCACUAUU 20 14733
BCLllA-12514 + CAGUGCCACUUUCUCACUAUU 21 14734
BCLllA-12515 + ACAGUGCCACU UUCUCACUAUU 22 14735
BCLllA-12516 + CACAGUGCCACUUUCUCACUAUU 23 14736
BCLllA-12517 + CCACAGUGCCACUUUCUCACUAUU 24 14737
BCLllA-12518 + G AAAAAU CACCCG AAG U U 18 14738
BCLllA-12519 + AG AAAAAU CACCCG AAG U U 19 14739
BCLllA-12520 + AAG AAAAAU CACCCG AAG U U 20 14740
BCLllA-12521 + AAAG AAAAAU CACCCG AAG UU 21 14741
BCLllA-12522 + CAAAG AAAAAU CACCCG AAG U U 22 14742
BCLllA-12523 + G CAAAG AAAAAU CACCCG AAG UU 23 14743
BCLllA-12524 + AGCAAAGAAAAAUCACCCGAAGUU 24 14744
BCLllA-12525 + CGGAAUCCAGCCUAAGU U 18 14745
BCLllA-12526 + GCGGAAUCCAGCCUAAGUU 19 14746
BCLllA-10257 + CGCGGAAUCCAGCCUAAGUU 20 14747
BCLllA-12527 + ACGCGGAAUCCAGCCUAAGUU 21 14748
BCLllA-12528 + AACGCGGAAUCCAGCCUAAGUU 22 14749
BCLllA-12529 + CAACGCGGAAUCCAGCCUAAGUU 23 14750
BCLllA-12530 + GCAACGCGGAAUCCAGCCUAAGUU 24 14751
BCLllA-12531 + GAAUCAUUGCAUUCCUU U 18 14752
BCLllA-12532 + GGAAUCAUUGCAUUCCUUU 19 14753 BCLllA-12533 + UGGAAUCAUUGCAUUCCUUU 20 14754
BCLllA-12534 + GUGGAAUCAUUGCAUUCCUUU 21 14755
BCLllA-12535 + AGUGGAAUCAUUGCAUUCCUUU 22 14756
BCLllA-12536 + GAGUGGAAUCAUUGCAUUCCUUU 23 14757
BCLllA-12537 + GGAGUGGAAUCAUUGCAUUCCUUU 24 14758
BCLllA-12538 - CCACUCACCGUAAGAAAA 18 14759
BCLllA-12539 - CCCACU CACCG UAAGAAAA 19 14760
BCLllA-10024 - U CCCACU CACCG UAAGAAAA 20 14761
BCLllA-12540 - UUCCCACUCACCGUAAGAAAA 21 14762
BCLllA-12541 - CUUCCCACUCACCGUAAGAAAA 22 14763
BCLllA-12542 - GCUUCCCACUCACCGUAAGAAAA 23 14764
BCLllA-12543 - UGCUUCCCACUCACCGUAAGAAAA 24 14765
BCLllA-12544 - CCCACUCACCGUAAGAAA 18 14766
BCLllA-12545 - UCCCACUCACCGUAAGAAA 19 14767
BCLllA-12546 - U U CCCACU CACCG U AAG AAA 20 14768
BCLllA-12547 - CU U CCCACU CACCG U AAG AAA 21 14769
BCLllA-12548 - GCUUCCCACUCACCGUAAGAAA 22 14770
BCLllA-12549 - UGCUUCCCACUCACCGUAAGAAA 23 14771
BCLllA-12550 - UUGCUUCCCACUCACCGUAAGAAA 24 14772
BCLllA-12551 - UGGGAGCUGGUGGGGAAA 18 14773
BCLllA-12552 - GUGGGAGCUGGUGGGGAAA 19 14774
BCLllA-10028 - GGUGGGAGCUGGUGGGGAAA 20 14775
BCLllA-12553 - GGGUGGGAGCUGGUGGGGAAA 21 14776
BCLllA-12554 - GGGGUGGGAGCUGGUGGGGAAA 22 14777
BCLllA-12555 - GGGGGUGGGAGCUGGUGGGGAAA 23 14778
BCLllA-12556 - UGGGGGUGGGAGCUGGUGGGGAAA 24 14779
BCLllA-12557 - AACGAUUCCCGGGGAGAA 18 14780
BCLllA-12558 - AAACGAUUCCCGGGGAGAA 19 14781
BCLllA-12559 - AAAACGAUUCCCGGGGAGAA 20 14782
BCLllA-12560 - AAAAACGAUUCCCGGGGAGAA 21 14783
BCLllA-12561 - AAAAAACGAUUCCCGGGGAGAA 22 14784
BCLllA-12562 - UAAAAAACGAUUCCCGGGGAGAA 23 14785
BCLllA-12563 - CUAAAAAACGAUUCCCGGGGAGAA 24 14786
BCLllA-12564 - UUUAUUUCUCUUUUCGAA 18 14787
BCLllA-12565 - CUUUAUUUCUCUUUUCGAA 19 14788
BCLllA-12566 - GCUUUAUUUCUCUUUUCGAA 20 14789
BCLllA-12567 - CGCUUUAUUUCUCUUUUCGAA 21 14790
BCLllA-12568 - CCGCUUUAUUUCUCUUUUCGAA 22 14791
BCLllA-12569 - GCCGCUUUAUUUCUCUUUUCGAA 23 14792
BCLllA-12570 - CGCCGCUUUAUUUCUCUUUUCGAA 24 14793
BCLllA-12571 - GUGGGAGCUGGUGGGGAA 18 14794
BCLllA-12572 - GGUGGGAGCUGGUGGGGAA 19 14795 BCLllA-10032 - GGGUGGGAGCUGGUGGGGAA 20 14796
BCLllA-12573 - GGGGUGGGAGCUGGUGGGGAA 21 14797
BCLllA-12574 - GGGGGUGGGAGCUGGUGGGGAA 22 14798
BCLllA-12575 - UGGGGGUGGGAGCUGGUGGGGAA 23 14799
BCLllA-12576 - CUGGGGGUGGGAGCUGGUGGGGAA 24 14800
BCLllA-12577 - GAAAGUGGCACUGUGGAA 18 14801
BCLllA-12578 - AGAAAGUGGCACUGUGGAA 19 14802
BCLllA-10033 - GAGAAAGUGGCACUGUGGAA 20 14803
BCLllA-12579 - UGAGAAAGUGGCACUGUGGAA 21 14804
BCLllA-12580 - GUGAGAAAGUGGCACUGUGGAA 22 14805
BCLllA-12581 - AGUGAGAAAGUGGCACUGUGGAA 23 14806
BCLllA-12582 - UAGUGAGAAAGUGGCACUGUGGAA 24 14807
BCLllA-12583 - CUCACGGUCAAGUGUGCA 18 14808
BCLllA-12584 - GCUCACGGUCAAGUGUGCA 19 14809
BCLllA-12585 - CGCUCACGGUCAAGUGUGCA 20 14810
BCLllA-12586 - GCGCUCACGGUCAAGUGUGCA 21 14811
BCLllA-12587 - CGCGCUCACGGUCAAGUGUGCA 22 14812
BCLllA-12588 - GCGCGCUCACGGUCAAGUGUGCA 23 14813
BCLllA-12589 - AGCGCGCUCACGGUCAAGUGUGCA 24 14814
BCLllA-12590 - GGAGAGGGGCCGCGGCGA 18 14815
BCLllA-12591 - GGGAGAGGGGCCGCGGCGA 19 14816
BCLllA-10043 - CGGGAGAGGGGCCGCGGCGA 20 14817
BCLllA-12592 - UCGGGAGAGGGGCCGCGGCGA 21 14818
BCLllA-12593 - GUCGGGAGAGGGGCCGCGGCGA 22 14819
BCLllA-12594 - AGUCGGGAGAGGGGCCGCGGCGA 23 14820
BCLllA-12595 - GAGUCGGGAGAGGGGCCGCGGCGA 24 14821
BCLllA-12596 - CCGUGGGACCGGGAAGGA 18 14822
BCLllA-12597 - GCCGUGGGACCGGGAAGGA 19 14823
BCLllA-10045 - AGCCGUGGGACCGGGAAGGA 20 14824
BCLllA-12598 - GAGCCGUGGGACCGGGAAGGA 21 14825
BCLllA-12599 - AGAGCCGUGGGACCGGGAAGGA 22 14826
BCLllA-12600 - GAGAGCCGUGGGACCGGGAAGGA 23 14827
BCLllA-12601 - GGAGAGCCGUGGGACCGGGAAGGA 24 14828
BCLllA-12602 - GAGUCCGCGGAGUCGGGA 18 14829
BCLllA-12603 - UGAGUCCGCGGAGUCGGGA 19 14830
BCLllA-12604 - CUGAGUCCGCGGAGUCGGGA 20 14831
BCLllA-12605 - CCUGAGUCCGCGGAGUCGGGA 21 14832
BCLllA-12606 - UCCUGAGUCCGCGGAGUCGGGA 22 14833
BCLllA-12607 - CUCCUGAGUCCGCGGAGUCGGGA 23 14834
BCLllA-12608 - GCUCCUGAGUCCGCGGAGUCGGGA 24 14835
BCLllA-12609 - GGCGUCCACACGCGGGGA 18 14836
BCLllA-12610 - UGGCGUCCACACGCGGGGA 19 14837 BCLllA-12611 - CUGGCGUCCACACGCGGGGA 20 14838
BCLllA-12612 - CCUGGCGUCCACACGCGGGGA 21 14839
BCLllA-12613 - CCCUGGCGUCCACACGCGGGGA 22 14840
BCLllA-12614 - CCCCUGGCGUCCACACGCGGGGA 23 14841
BCLllA-12615 - GCCCCUGGCGUCCACACGCGGGGA 24 14842
BCLllA-12616 - GCGCGGCGGCGGCGGGGA 18 14843
BCLllA-12617 - AGCGCGGCGGCGGCGGGGA 19 14844
BCLllA-10051 - GAGCGCGGCGGCGGCGGGGA 20 14845
BCLllA-12618 - CGAGCGCGGCGGCGGCGGGGA 21 14846
BCLllA-12619 - GCGAGCGCGGCGGCGGCGGGGA 22 14847
BCLllA-12620 - AGCGAGCGCGGCGGCGGCGGGGA 23 14848
BCLllA-12621 - GAGCGAGCGCGGCGGCGGCGGGGA 24 14849
BCLllA-12622 - GGUGGGAGCUGGUGGGGA 18 14850
BCLllA-12623 - GGGUGGGAGCUGGUGGGGA 19 14851
BCLllA-12624 - GGGGUGGGAGCUGGUGGGGA 20 14852
BCLllA-12625 - GGGGGUGGGAGCUGGUGGGGA 21 14853
BCLllA-12626 - UGGGGGUGGGAGCUGGUGGGGA 22 14854
BCLllA-12627 - CUGGGGGUGGGAGCUGGUGGGGA 23 14855
BCLllA-12628 - CCUGGGGGUGGGAGCUGGUGGGGA 24 14856
BCLllA-12629 - ACGGGGAGAGCCGUGGGA 18 14857
BCLllA-12630 - GACGGGGAGAGCCGUGGGA 19 14858
BCLllA-12631 - CGACGGGGAGAGCCGUGGGA 20 14859
BCLllA-12632 - GCGACGGGGAGAGCCGUGGGA 21 14860
BCLllA-12633 - GGCGACGGGGAGAGCCGUGGGA 22 14861
BCLllA-12634 - CGGCGACGGGGAGAGCCGUGGGA 23 14862
BCLllA-12635 - GCGGCGACGGGGAGAGCCGUGGGA 24 14863
BCLllA-12636 - AGAAAGUGGCACUGUGGA 18 14864
BCLllA-12637 - GAGAAAGUGGCACUGUGGA 19 14865
BCLllA-12638 - UGAGAAAGUGGCACUGUGGA 20 14866
BCLllA-12639 - GUGAGAAAGUGGCACUGUGGA 21 14867
BCLllA-12640 - AGUGAGAAAGUGGCACUGUGGA 22 14868
BCLllA-12641 - UAGUGAGAAAGUGGCACUGUGGA 23 14869
BCLllA-12642 - AUAGUGAGAAAGUGGCACUGUGGA 24 14870
BCLllA-12643 - CGCCAGUUUUGCAAAAUA 18 14871
BCLllA-12644 - CCGCCAGUUUUGCAAAAUA 19 14872
BCLllA-12645 - CCCGCCAGUUUUGCAAAAUA 20 14873
BCLllA-12646 - CCCCGCCAGUUUUGCAAAAUA 21 14874
BCLllA-12647 - GCCCCGCCAGUUUUGCAAAAUA 22 14875
BCLllA-12648 - CGCCCCGCCAGUUUUGCAAAAUA 23 14876
BCLllA-12649 - CCGCCCCGCCAGUUUUGCAAAAUA 24 14877
BCLllA-12650 - GUAGUCAUCCCCACAAUA 18 14878
BCLllA-12651 - AGUAGUCAUCCCCACAAUA 19 14879 BCLllA-12652 - AAGUAGUCAUCCCCACAAUA 20 14880
BCLllA-12653 - AAAGUAGUCAUCCCCACAAUA 21 14881
BCLllA-12654 - GAAAGUAGUCAUCCCCACAAUA 22 14882
BCLllA-12655 - GGAAAGUAGUCAUCCCCACAAUA 23 14883
BCLllA-12656 - AGGAAAGUAGUCAUCCCCACAAUA 24 14884
BCLllA-12657 - GGGAAGUGGGUGUGCGUA 18 14885
BCLllA-12658 - GGGGAAGUGGGUGUGCGUA 19 14886
BCLllA-10055 - AGGGGAAGUGGGUGUGCGUA 20 14887
BCLllA-12659 - GAGGGGAAGUGGGUGUGCGUA 21 14888
BCLllA-12660 - GGAGGGGAAGUGGGUGUGCGUA 22 14889
BCLllA-12661 - GGGAGGGGAAGUGGGUGUGCGUA 23 14890
BCLllA-12662 - GGGGAGGGGAAGUGGGUGUGCGUA 24 14891
BCLllA-12663 - UAAGAAAAUGGGGGGGUA 18 14892
BCLllA-12664 - GUAAGAAAAUGGGGGGGUA 19 14893
BCLllA-10056 - CGUAAGAAAAUGGGGGGGUA 20 14894
BCLllA-12665 - CCGUAAGAAAAUGGGGGGGUA 21 14895
BCLllA-12666 - ACCGUAAGAAAAUGGGGGGGUA 22 14896
BCLllA-12667 - CACCGUAAGAAAAUGGGGGGGUA 23 14897
BCLllA-12668 - UCACCGUAAGAAAAUGGGGGGGUA 24 14898
BCLllA-12669 - A ACAAC U CAC AU G CAAAC 18 14899
BCLllA-12670 - GAACAACUCACAUGCAAAC 19 14900
BCLllA-12671 - CGAACAACUCACAUGCAAAC 20 14901
BCLllA-12672 - GCGAACAACUCACAUGCAAAC 21 14902
BCLllA-12673 - UGCGAACAACUCACAUGCAAAC 22 14903
BCLllA-12674 - UUGCGAACAACUCACAUGCAAAC 23 14904
BCLllA-12675 - G U U G CG AACAAC U C ACA U G CAAAC 24 14905
BCLllA-12676 - CCGCUGCGGAGCUGUAAC 18 14906
BCLllA-12677 - CCCGCUGCGGAGCUGUAAC 19 14907
BCLllA-12678 - GCCCGCUGCGGAGCUGUAAC 20 14908
BCLllA-12679 - CGCCCGCUGCGGAGCUGUAAC 21 14909
BCLllA-12680 - UCGCCCGCUGCGGAGCUGUAAC 22 14910
BCLllA-12681 - CUCGCCCGCUGCGGAGCUGUAAC 23 14911
BCLllA-12682 - CCUCGCCCGCUGCGGAGCUGUAAC 24 14912
BCLllA-12683 - GGCCCCUGGCGUCCACAC 18 14913
BCLllA-12684 - CGGCCCCUGGCGUCCACAC 19 14914
BCLllA-12685 - UCGGCCCCUGGCGUCCACAC 20 14915
BCLllA-12686 - UUCGGCCCCUGGCGUCCACAC 21 14916
BCLllA-12687 - CUUCGGCCCCUGGCGUCCACAC 22 14917
BCLllA-12688 - ACUUCGGCCCCUGGCGUCCACAC 23 14918
BCLllA-12689 - UACUUCGGCCCCUGGCGUCCACAC 24 14919
BCLllA-12690 - GCGCGGGCUCCUGGAGAC 18 14920
BCLllA-12691 - CGCGCGGGCUCCUGGAGAC 19 14921 BCLllA-12692 - CCGCGCGGGCUCCUGGAGAC 20 14922
BCLllA-12693 - GCCGCGCGGGCUCCUGGAGAC 21 14923
BCLllA-12694 - GGCCGCGCGGGCUCCUGGAGAC 22 14924
BCLllA-12695 - AGGCCGCGCGGGCUCCUGGAGAC 23 14925
BCLllA-12696 - CAGGCCGCGCGGGCUCCUGGAGAC 24 14926
BCLllA-12697 - GAGAGGGGCCGCGGCGAC 18 14927
BCLllA-12698 - GGAGAGGGGCCGCGGCGAC 19 14928
BCLllA-10061 - GGGAGAGGGGCCGCGGCGAC 20 14929
BCLllA-12699 - CGGGAGAGGGGCCGCGGCGAC 21 14930
BCLllA-12700 - UCGGGAGAGGGGCCGCGGCGAC 22 14931
BCLllA-12701 - GUCGGGAGAGGGGCCGCGGCGAC 23 14932
BCLllA-12702 - AGUCGGGAGAGGGGCCGCGGCGAC 24 14933
BCLllA-12703 - CGUGGGACCGGGAAGGAC 18 14934
BCLllA-12704 - CCGUGGGACCGGGAAGGAC 19 14935
BCLllA-10062 - GCCGUGGGACCGGGAAGGAC 20 14936
BCLllA-12705 - AGCCGUGGGACCGGGAAGGAC 21 14937
BCLllA-12706 - GAGCCGUGGGACCGGGAAGGAC 22 14938
BCLllA-12707 - AGAGCCGUGGGACCGGGAAGGAC 23 14939
BCLllA-12708 - GAGAGCCGUGGGACCGGGAAGGAC 24 14940
BCLllA-12709 - CGGGGAGAGCCGUGGGAC 18 14941
BCLllA-12710 - ACGGGGAGAGCCGUGGGAC 19 14942
BCLllA-10065 - GACGGGGAGAGCCGUGGGAC 20 14943
BCLllA-12711 - CGACGGGGAGAGCCGUGGGAC 21 14944
BCLllA-12712 - GCGACGGGGAGAGCCGUGGGAC 22 14945
BCLllA-12713 - GGCGACGGGGAGAGCCGUGGGAC 23 14946
BCLllA-12714 - CGGCGACGGGGAGAGCCGUGGGAC 24 14947
BCLllA-12715 - ACAACUCACAUGCAAACC 18 14948
BCLllA-12716 - AACAACUCACAUGCAAACC 19 14949
BCLllA-10066 - GAACAACUCACAUGCAAACC 20 14950
BCLllA-12717 - CGAACAACUCACAUGCAAACC 21 14951
BCLllA-12718 - GCGAACAACUCACAUGCAAACC 22 14952
BCLllA-12719 - U G CG AACAAC U CAC AU G CAAACC 23 14953
BCLllA-12720 - UUGCGAACAACUCACAUGCAAACC 24 14954
BCLllA-12721 - GGGGAGAGCCGUGGGACC 18 14955
BCLllA-12722 - CGGGGAGAGCCGUGGGACC 19 14956
BCLllA-10070 - ACGGGGAGAGCCGUGGGACC 20 14957
BCLllA-12723 - GACGGGGAGAGCCGUGGGACC 21 14958
BCLllA-12724 - CGACGGGGAGAGCCGUGGGACC 22 14959
BCLllA-12725 - GCGACGGGGAGAGCCGUGGGACC 23 14960
BCLllA-12726 - GGCGACGGGGAGAGCCGUGGGACC 24 14961
BCLllA-12727 - UCGGCCUUGGGGGCGCCC 18 14962
BCLllA-12728 - CUCGGCCUUGGGGGCGCCC 19 14963 BCLllA-12729 - GCUCGGCCUUGGGGGCGCCC 20 14964
BCLllA-12730 - GGCUCGGCCUUGGGGGCGCCC 21 14965
BCLllA-12731 - UGGCUCGGCCUUGGGGGCGCCC 22 14966
BCLllA-12732 - CUGGCUCGGCCUUGGGGGCGCCC 23 14967
BCLllA-12733 - CCUGGCUCGGCCUUGGGGGCGCCC 24 14968
BCLllA-12734 - GUCUAAAAAACGAUUCCC 18 14969
BCLllA-12735 - AGUCUAAAAAACGAUUCCC 19 14970
BCLllA-10082 - AAGUCUAAAAAACGAUUCCC 20 14971
BCLllA-12736 - CAAGUCUAAAAAACGAUUCCC 21 14972
BCLllA-12737 - ACAAGUCUAAAAAACGAUUCCC 22 14973
BCLllA-12738 - UACAAGUCUAAAAAACGAUUCCC 23 14974
BCLllA-12739 - GUACAAGUCUAAAAAACGAUUCCC 24 14975
BCLllA-12740 - GCCCGCGCUUCCCCAGCC 18 14976
BCLllA-12741 - CGCCCGCGCUUCCCCAGCC 19 14977
BCLllA-10084 - CCGCCCGCGCUUCCCCAGCC 20 14978
BCLllA-12742 - UCCGCCCGCGCUUCCCCAGCC 21 14979
BCLllA-12743 - CUCCGCCCGCGCUUCCCCAGCC 22 14980
BCLllA-12744 - CCUCCGCCCGCGCUUCCCCAGCC 23 14981
BCLllA-12745 - CCCUCCGCCCGCGCUUCCCCAGCC 24 14982
BCLllA-12746 - AGUUUCCCGAGCGCAGCC 18 14983
BCLllA-12747 - AAGUUUCCCGAGCGCAGCC 19 14984
BCLllA-12748 - A AAG UUUCCCGAG CG C AG CC 20 14985
BCLllA-12749 - CAAAG U U U CCCG AG CG CAGCC 21 14986
BCLllA-12750 - GCAAAGUUUCCCGAGCGCAGCC 22 14987
BCLllA-12751 - GGCAAAGUUUCCCGAGCGCAGCC 23 14988
BCLllA-12752 - GGGCAAAGUUUCCCGAGCGCAGCC 24 14989
BCLllA-12753 - GCGGCGACGGGGAGAGCC 18 14990
BCLllA-12754 - CGCGGCGACGGGGAGAGCC 19 14991
BCLllA-12755 - CCGCGGCGACGGGGAGAGCC 20 14992
BCLllA-12756 - GCCGCGGCGACGGGGAGAGCC 21 14993
BCLllA-12757 - GGCCGCGGCGACGGGGAGAGCC 22 14994
BCLllA-12758 - GGGCCGCGGCGACGGGGAGAGCC 23 14995
BCLllA-12759 - GGGGCCGCGGCGACGGGGAGAGCC 24 14996
BCLllA-12760 - CCGGUCCCUGGCUCGGCC 18 14997
BCLllA-12761 - CCCGGUCCCUGGCUCGGCC 19 14998
BCLllA-12762 - UCCCGGUCCCUGGCUCGGCC 20 14999
BCLllA-12763 - CCAGGCCGCGCGGGCUCC 18 15000
BCLllA-12764 - UCCAGGCCGCGCGGGCUCC 19 15001
BCLllA-10091 - UUCCAGGCCGCGCGGGCUCC 20 15002
BCLllA-12765 - UUUCCAGGCCGCGCGGGCUCC 21 15003
BCLllA-12766 - CUUUCCAGGCCGCGCGGGCUCC 22 15004
BCLllA-12767 - UCUUUCCAGGCCGCGCGGGCUCC 23 15005 BCLllA-12768 - CUCUUUCCAGGCCGCGCGGGCUCC 24 15006
BCLllA-12769 - UUCUUUGCUGUCCUCUCC 18 15007
BCLllA-12770 - UUUCUUUGCUGUCCUCUCC 19 15008
BCLllA-12771 - UUUUCUUUGCUGUCCUCUCC 20 15009
BCLllA-12772 - UUUUUCUUUGCUGUCCUCUCC 21 15010
BCLllA-12773 - AUUUUUCUUUGCUGUCCUCUCC 22 15011
BCLllA-12774 - GAUUUUUCUUUGCUGUCCUCUCC 23 15012
BCLllA-12775 - UGAUUUUUCUUUGCUGUCCUCUCC 24 15013
BCLllA-12776 - CCCGGCGCUCCUGAGUCC 18 15014
BCLllA-12777 - CCCCGGCGCUCCUGAGUCC 19 15015
BCLllA-12778 - CCCCCGGCGCUCCUGAGUCC 20 15016
BCLllA-12779 - GCCCCCGGCGCUCCUGAGUCC 21 15017
BCLllA-12780 - GGCCCCCGGCGCUCCUGAGUCC 22 15018
BCLllA-12781 - GGGCCCCCGGCGCUCCUGAGUCC 23 15019
BCLllA-12782 - GGGGCCCCCGGCGCUCCUGAGUCC 24 15020
BCLllA-12783 - GUACGGAGGAGGGUGUCC 18 15021
BCLllA-12784 - CGUACGGAGGAGGGUGUCC 19 15022
BCLllA-10094 - GCGUACGGAGGAGGGUGUCC 20 15023
BCLllA-12785 - UGCGUACGGAGGAGGGUGUCC 21 15024
BCLllA-12786 - GUGCGUACGGAGGAGGGUGUCC 22 15025
BCLllA-12787 - UGUGCGUACGGAGGAGGGUGUCC 23 15026
BCLllA-12788 - GUGUGCGUACGGAGGAGGGUGUCC 24 15027
BCLllA-12789 - AGUCUAAAAAACGAUUCC 18 15028
BCLllA-12790 - AAGUCU AAAAAACG AUUCC 19 15029
BCLllA-10095 - CAAGUCUAAAAAACGAUUCC 20 15030
BCLllA-12791 - ACAAG UCU AAAAAACG AUUCC 21 15031
BCLllA-12792 - UACAAGUCUAAAAAACGAUUCC 22 15032
BCLllA-12793 - GUACAAGUCUAAAAAACGAUUCC 23 15033
BCLllA-12794 - AG U ACAAG U CU AAAAAACG AU U CC 24 15034
BCLllA-12795 - CGCCCGCGCUUCCCCAGC 18 15035
BCLllA-12796 - CCGCCCGCGCUUCCCCAGC 19 15036
BCLllA-12797 - UCCGCCCGCGCUUCCCCAGC 20 15037
BCLllA-12798 - CUCCGCCCGCGCUUCCCCAGC 21 15038
BCLllA-12799 - CCUCCGCCCGCGCUUCCCCAGC 22 15039
BCLllA-12800 - CCCUCCGCCCGCGCUUCCCCAGC 23 15040
BCLllA-12801 - UCCCUCCGCCCGCGCUUCCCCAGC 24 15041
BCLllA-12802 - CACGGU CA AG U G U G CAG C 18 15042
BCLllA-12803 - UCACGGUCAAGUGUGCAGC 19 15043
BCLllA-10100 - CUCACGGUCAAGUGUGCAGC 20 15044
BCLllA-12804 - GCUCACGGUCAAGUGUGCAGC 21 15045
BCLllA-12805 - CGCUCACGGUCAAGUGUGCAGC 22 15046
BCLllA-12806 - GCGCUCACGGUCAAGUGUGCAGC 23 15047 BCLllA-12807 - CGCGCUCACGGUCAAGUGUGCAGC 24 15048
BCLllA-12808 - CCCCUGGCGUCCACACGC 18 15049
BCLllA-12809 - GCCCCUGGCGUCCACACGC 19 15050
BCLllA-10103 - GGCCCCUGGCGUCCACACGC 20 15051
BCLllA-12810 - CGGCCCCUGGCGUCCACACGC 21 15052
BCLllA-12811 - UCGGCCCCUGGCGUCCACACGC 22 15053
BCLllA-12812 - UUCGGCCCCUGGCGUCCACACGC 23 15054
BCLllA-12813 - CUUCGGCCCCUGGCGUCCACACGC 24 15055
BCLllA-12814 - CCCCUCUUUCCAGGCCGC 18 15056
BCLllA-12815 - UCCCCUCUUUCCAGGCCGC 19 15057
BCLllA-12816 - GUCCCCUCUUUCCAGGCCGC 20 15058
BCLllA-12817 - GGUCCCCUCUUUCCAGGCCGC 21 15059
BCLllA-12818 - CGGUCCCCUCUUUCCAGGCCGC 22 15060
BCLllA-12819 - CCGGUCCCCUCUUUCCAGGCCGC 23 15061
BCLllA-12820 - CCCGGUCCCCUCUUUCCAGGCCGC 24 15062
BCLllA-12821 - GCCGCCUUUUGUUCCGGC 18 15063
BCLllA-12822 - UGCCGCCUUUUGUUCCGGC 19 15064
BCLllA-12823 - CUGCCGCCUUUUGUUCCGGC 20 15065
BCLllA-12824 - ACUGCCGCCUUUUGUUCCGGC 21 15066
BCLllA-12825 - CACUGCCGCCUUUUGUUCCGGC 22 15067
BCLllA-12826 - GCACUGCCGCCUUUUGUUCCGGC 23 15068
BCLllA-12827 - GGCACUGCCGCCUUUUGUUCCGGC 24 15069
BCLllA-12828 - AGCGAGCGCGGCGGCGGC 18 15070
BCLllA-12829 - GAGCGAGCGCGGCGGCGGC 19 15071
BCLllA-10114 - GGAGCGAGCGCGGCGGCGGC 20 15072
BCLllA-12830 - GGGAGCGAGCGCGGCGGCGGC 21 15073
BCLllA-12831 - GGGGAGCGAGCGCGGCGGCGGC 22 15074
BCLllA-12832 - CGGGGAGCGAGCGCGGCGGCGGC 23 15075
BCLllA-12833 - GCGGGGAGCGAGCGCGGCGGCGGC 24 15076
BCLllA-12834 - CCGAGCGCAGCCGCGGGC 18 15077
BCLllA-12835 - CCCGAGCGCAGCCGCGGGC 19 15078
BCLllA-12836 - UCCCGAGCGCAGCCGCGGGC 20 15079
BCLllA-12837 - UUCCCGAGCGCAGCCGCGGGC 21 15080
BCLllA-12838 - UUUCCCGAGCGCAGCCGCGGGC 22 15081
BCLllA-12839 - GUUUCCCGAGCGCAGCCGCGGGC 23 15082
BCLllA-12840 - AG U U U CCCG AG CG CAG CCG CGGG C 24 15083
BCLllA-12841 - UCCAGGCCGCGCGGGCUC 18 15084
BCLllA-12842 - UUCCAGGCCGCGCGGGCUC 19 15085
BCLllA-12843 - UUUCCAGGCCGCGCGGGCUC 20 15086
BCLllA-12844 - CUUUCCAGGCCGCGCGGGCUC 21 15087
BCLllA-12845 - UCUUUCCAGGCCGCGCGGGCUC 22 15088
BCLllA-12846 - CUCUUUCCAGGCCGCGCGGGCUC 23 15089 BCLllA-12847 - CCUCUUUCCAGGCCGCGCGGGCUC 24 15090
BCLllA-12848 - UCCUGAGUCCGCGGAGUC 18 15091
BCLllA-12849 - CUCCUGAGUCCGCGGAGUC 19 15092
BCLllA-10128 - GCUCCUGAGUCCGCGGAGUC 20 15093
BCLllA-12850 - CGCUCCUGAGUCCGCGGAGUC 21 15094
BCLllA-12851 - GCGCUCCUGAGUCCGCGGAGUC 22 15095
BCLllA-12852 - GGCGCUCCUGAGUCCGCGGAGUC 23 15096
BCLllA-12853 - CGGCGCUCCUGAGUCCGCGGAGUC 24 15097
BCLllA-12854 - CGUACGGAGGAGGGUGUC 18 15098
BCLllA-12855 - GCGUACGGAGGAGGGUGUC 19 15099
BCLllA-10130 - UGCGUACGGAGGAGGGUGUC 20 15100
BCLllA-12856 - GUGCGUACGGAGGAGGGUGUC 21 15101
BCLllA-12857 - UGUGCGUACGGAGGAGGGUGUC 22 15102
BCLllA-12858 - GUGUGCGUACGGAGGAGGGUGUC 23 15103
BCLllA-12859 - GGUGUGCGUACGGAGGAGGGUGUC 24 15104
BCLllA-12860 - A AG U C U AAAAAACG A U U C 18 15105
BCLllA-12861 - CAAGUCU AAAAAACG AUUC 19 15106
BCLllA-12862 - ACAAG UCU AAAAAACG AUUC 20 15107
BCLllA-12863 - UACAAGUCUAAAAAACGAUUC 21 15108
BCLllA-12864 - GUACAAGUCUAAAAAACGAUUC 22 15109
BCLllA-12865 - AGUACAAGUCUAAAAAACGAUUC 23 15110
BCLllA-12866 - GAG U ACAAG U CU AAAAAACG AU U C 24 15111
BCLllA-12867 - CUCCUCGGGCAAAGUUUC 18 15112
BCLllA-12868 - UCUCCUCGGGCAAAGUUUC 19 15113
BCLllA-12869 - CUCUCCUCGGGCAAAGUUUC 20 15114
BCLllA-12870 - CCUCUCCUCGGGCAAAGUUUC 21 15115
BCLllA-12871 - UCCUCUCCUCGGGCAAAGUUUC 22 15116
BCLllA-12872 - GUCCUCUCCUCGGGCAAAGUUUC 23 15117
BCLllA-12873 - UGUCCUCUCCUCGGGCAAAGUUUC 24 15118
BCLllA-12874 - UCACGGU CAAG U G U G C AG 18 15119
BCLllA-12875 - CUCACGGUCAAGUGUGCAG 19 15120
BCLllA-10145 - GCUCACGGUCAAGUGUGCAG 20 15121
BCLllA-12876 - CGCUCACGGUCAAGUGUGCAG 21 15122
BCLllA-12877 - GCGCUCACGGUCAAGUGUGCAG 22 15123
BCLllA-12878 - CG CG CU CACGG U CAAG U G U G CAG 23 15124
BCLllA-12879 - GCGCGCUCACGGUCAAGUGUGCAG 24 15125
BCLllA-12880 - UUCCCGGGGAGAAAAGAG 18 15126
BCLllA-12881 - AUUCCCGGGGAGAAAAGAG 19 15127
BCLllA-12882 - GAUUCCCGGGGAGAAAAGAG 20 15128
BCLllA-12883 - CGAUUCCCGGGGAGAAAAGAG 21 15129
BCLllA-12884 - ACGAUUCCCGGGGAGAAAAGAG 22 15130
BCLllA-12885 - AACGAUUCCCGGGGAGAAAAGAG 23 15131 BCLllA-12886 - AAACGAUUCCCGGGGAGAAAAGAG 24 15132
BCLllA-12887 - GCUCCUGAGUCCGCGGAG 18 15133
BCLllA-12888 - CGCUCCUGAGUCCGCGGAG 19 15134
BCLllA-12889 - GCGCUCCUGAGUCCGCGGAG 20 15135
BCLllA-12890 - GGCGCUCCUGAGUCCGCGGAG 21 15136
BCLllA-12891 - CGGCGCUCCUGAGUCCGCGGAG 22 15137
BCLllA-12892 - CCGGCGCUCCUGAGUCCGCGGAG 23 15138
BCLllA-12893 - CCCGGCGCUCCUGAGUCCGCGGAG 24 15139
BCLllA-12894 - AGUCCGCGGAGUCGGGAG 18 15140
BCLllA-12895 - GAGUCCGCGGAGUCGGGAG 19 15141
BCLllA-10150 - UGAGUCCGCGGAGUCGGGAG 20 15142
BCLllA-12896 - CUGAGUCCGCGGAGUCGGGAG 21 15143
BCLllA-12897 - CCUGAGUCCGCGGAGUCGGGAG 22 15144
BCLllA-12898 - UCCUGAGUCCGCGGAGUCGGGAG 23 15145
BCLllA-12899 - CUCCUGAGUCCGCGGAGUCGGGAG 24 15146
BCLllA-12900 - CGCGGCGGCGGCGGGGAG 18 15147
BCLllA-12901 - GCGCGGCGGCGGCGGGGAG 19 15148
BCLllA-10152 - AGCGCGGCGGCGGCGGGGAG 20 15149
BCLllA-12902 - GAGCGCGGCGGCGGCGGGGAG 21 15150
BCLllA-12903 - CGAGCGCGGCGGCGGCGGGGAG 22 15151
BCLllA-12904 - GCGAGCGCGGCGGCGGCGGGGAG 23 15152
BCLllA-12905 - AGCGAGCGCGGCGGCGGCGGGGAG 24 15153
BCLllA-11434 - CGCGUGUGUGGGGGGGAG 18 15154
BCLllA-11435 - CCGCGUGUGUGGGGGGGAG 19 15155
BCLllA-11436 - UCCGCGUGUGUGGGGGGGAG 20 15156
BCLllA-11437 - GUCCGCGUGUGUGGGGGGGAG 21 15157
BCLllA-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 15158
BCLllA-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 15159
BCLllA-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 15160
BCLllA-12906 - GCCCCUGGCGUCCACACG 18 15161
BCLllA-12907 - GGCCCCUGGCGUCCACACG 19 15162
BCLllA-10156 - CGGCCCCUGGCGUCCACACG 20 15163
BCLllA-12908 - UCGGCCCCUGGCGUCCACACG 21 15164
BCLllA-12909 - UUCGGCCCCUGGCGUCCACACG 22 15165
BCLllA-12910 - CUUCGGCCCCUGGCGUCCACACG 23 15166
BCLllA-12911 - ACUUCGGCCCCUGGCGUCCACACG 24 15167
BCLllA-12912 - AGAGGGGCCGCGGCGACG 18 15168
BCLllA-12913 - GAGAGGGGCCGCGGCGACG 19 15169
BCLllA-10158 - GGAGAGGGGCCGCGGCGACG 20 15170
BCLllA-12914 - GGGAGAGGGGCCGCGGCGACG 21 15171
BCLllA-12915 - CGGGAGAGGGGCCGCGGCGACG 22 15172
BCLllA-12916 - UCGGGAGAGGGGCCGCGGCGACG 23 15173 BCLllA-12917 - GUCGGGAGAGGGGCCGCGGCGACG 24 15174
BCLllA-12918 - GAAGUGGGUGUGCGUACG 18 15175
BCLllA-12919 - GGAAGUGGGUGUGCGUACG 19 15176
BCLllA-12920 - GGGAAGUGGGUGUGCGUACG 20 15177
BCLllA-12921 - GGGGAAGUGGGUGUGCGUACG 21 15178
BCLllA-12922 - AGGGGAAGUGGGUGUGCGUACG 22 15179
BCLllA-12923 - GAGGGGAAGUGGGUGUGCGUACG 23 15180
BCLllA-12924 - GGAGGGGAAGUGGGUGUGCGUACG 24 15181
BCLllA-12925 - UCUAAAAAACGAUUCCCG 18 15182
BCLllA-12926 - GUCUAAAAAACGAUUCCCG 19 15183
BCLllA-10164 - AGUCUAAAAAACGAUUCCCG 20 15184
BCLllA-12927 - AAG UCUAAAAAACGAUUCCCG 21 15185
BCLllA-12928 - CAAGUCUAAAAAACGAUUCCCG 22 15186
BCLllA-12929 - ACAAG UCUAAAAAACGAUUCCCG 23 15187
BCLllA-12930 - UACAAGUCUAAAAAACGAUUCCCG 24 15188
BCLllA-12931 - CGGCGACGGGGAGAGCCG 18 15189
BCLllA-12932 - GCGGCGACGGGGAGAGCCG 19 15190
BCLllA-10166 - CGCGGCGACGGGGAGAGCCG 20 15191
BCLllA-12933 - CCGCGGCGACGGGGAGAGCCG 21 15192
BCLllA-12934 - GCCGCGGCGACGGGGAGAGCCG 22 15193
BCLllA-12935 - GGCCGCGGCGACGGGGAGAGCCG 23 15194
BCLllA-12936 - GGGCCGCGGCGACGGGGAGAGCCG 24 15195
BCLllA-12937 - CCCUGGCGUCCACACGCG 18 15196
BCLllA-12938 - CCCCUGGCGUCCACACGCG 19 15197
BCLllA-10175 - GCCCCUGGCGUCCACACGCG 20 15198
BCLllA-12939 - GGCCCCUGGCGUCCACACGCG 21 15199
BCLllA-12940 - CGGCCCCUGGCGUCCACACGCG 22 15200
BCLllA-12941 - UCGGCCCCUGGCGUCCACACGCG 23 15201
BCLllA-12942 - UUCGGCCCCUGGCGUCCACACGCG 24 15202
BCLllA-12943 - GGGAGAGGGGCCGCGGCG 18 15203
BCLllA-12944 - CGGGAGAGGGGCCGCGGCG 19 15204
BCLllA-12945 - UCGGGAGAGGGGCCGCGGCG 20 15205
BCLllA-12946 - GUCGGGAGAGGGGCCGCGGCG 21 15206
BCLllA-12947 - AGUCGGGAGAGGGGCCGCGGCG 22 15207
BCLllA-12948 - GAGUCGGGAGAGGGGCCGCGGCG 23 15208
BCLllA-12949 - GGAGUCGGGAGAGGGGCCGCGGCG 24 15209
BCLllA-12950 - GGAGCGAGCGCGGCGGCG 18 15210
BCLllA-12951 - GGGAGCGAGCGCGGCGGCG 19 15211
BCLllA-12952 - GGGGAGCGAGCGCGGCGGCG 20 15212
BCLllA-12953 - CGGGGAGCGAGCGCGGCGGCG 21 15213
BCLllA-12954 - GCGGGGAGCGAGCGCGGCGGCG 22 15214
BCLllA-12955 - CGCGGGGAGCGAGCGCGGCGGCG 23 15215 BCLllA-12956 - ACGCGGGGAGCGAGCGCGGCGGCG 24 15216
BCLllA-12957 - GCGAGCGCGGCGGCGGCG 18 15217
BCLllA-12958 - AGCGAGCGCGGCGGCGGCG 19 15218
BCLllA-10179 - GAGCGAGCGCGGCGGCGGCG 20 15219
BCLllA-12959 - GGAGCGAGCGCGGCGGCGGCG 21 15220
BCLllA-12960 - GGGAGCGAGCGCGGCGGCGGCG 22 15221
BCLllA-12961 - GGGGAGCGAGCGCGGCGGCGGCG 23 15222
BCLllA-12962 - CGGGGAGCGAGCGCGGCGGCGGCG 24 15223
BCLllA-12963 - GCCGUGGGACCGGGAAGG 18 15224
BCLllA-12964 - AGCCGUGGGACCGGGAAGG 19 15225
BCLllA-12965 - GAGCCGUGGGACCGGGAAGG 20 15226
BCLllA-12966 - AGAGCCGUGGGACCGGGAAGG 21 15227
BCLllA-12967 - GAGAGCCGUGGGACCGGGAAGG 22 15228
BCLllA-12968 - GGAGAGCCGUGGGACCGGGAAGG 23 15229
BCLllA-12969 - GGGAGAGCCGUGGGACCGGGAAGG 24 15230
BCLllA-12970 - AGAAAAUGGGGGGGUAGG 18 15231
BCLllA-12971 - AAGAAAAUGGGGGGGUAGG 19 15232
BCLllA-12972 - UAAGAAAAUGGGGGGGUAGG 20 15233
BCLllA-12973 - GUAAGAAAAUGGGGGGGUAGG 21 15234
BCLllA-12974 - CGUAAGAAAAUGGGGGGGUAGG 22 15235
BCLllA-12975 - CCGUAAGAAAAUGGGGGGGUAGG 23 15236
BCLllA-12976 - ACCGUAAGAAAAUGGGGGGGUAGG 24 15237
BCLllA-12977 - AAGUGGGUGUGCGUACGG 18 15238
BCLllA-12978 - GAAGUGGGUGUGCGUACGG 19 15239
BCLllA-10191 - GGAAGUGGGUGUGCGUACGG 20 15240
BCLllA-12979 - GGGAAGUGGGUGUGCGUACGG 21 15241
BCLllA-12980 - GGGGAAGUGGGUGUGCGUACGG 22 15242
BCLllA-12981 - AGGGGAAGUGGGUGUGCGUACGG 23 15243
BCLllA-12982 - GAGGGGAAGUGGGUGUGCGUACGG 24 15244
BCLllA-12983 - CGGUCAAGUGUGCAGCGG 18 15245
BCLllA-12984 - ACGGUCAAGUGUGCAGCGG 19 15246
BCLllA-12985 - CACGGUCAAGUGUGCAGCGG 20 15247
BCLllA-12986 - UCACGGUCAAGUGUGCAGCGG 21 15248
BCLllA-12987 - CUCACGGUCAAGUGUGCAGCGG 22 15249
BCLllA-12988 - GCUCACGGUCAAGUGUGCAGCGG 23 15250
BCLllA-12989 - CGCUCACGGUCAAGUGUGCAGCGG 24 15251
BCLllA-12990 - GAGCGAGCGCGGCGGCGG 18 15252
BCLllA-12991 - GGAGCGAGCGCGGCGGCGG 19 15253
BCLllA-10196 - GGGAGCGAGCGCGGCGGCGG 20 15254
BCLllA-12992 - GGGGAGCGAGCGCGGCGGCGG 21 15255
BCLllA-12993 - CGGGGAGCGAGCGCGGCGGCGG 22 15256
BCLllA-12994 - GCGGGGAGCGAGCGCGGCGGCGG 23 15257 BCLllA-12995 - CGCGGGGAGCGAGCGCGGCGGCGG 24 15258
BCLllA-12996 - CUGAGUCCGCGGAGUCGG 18 15259
BCLllA-12997 - CCUGAGUCCGCGGAGUCGG 19 15260
BCLllA-12998 - UCCUGAGUCCGCGGAGUCGG 20 15261
BCLllA-12999 - CUCCUGAGUCCGCGGAGUCGG 21 15262
BCLllA-13000 - GCUCCUGAGUCCGCGGAGUCGG 22 15263
BCLllA-13001 - CGCUCCUGAGUCCGCGGAGUCGG 23 15264
BCLllA-13002 - GCGCUCCUGAGUCCGCGGAGUCGG 24 15265
BCLllA-13003 - GAAAAUGGGGGGGUAGGG 18 15266
BCLllA-13004 - AGAAAAUGGGGGGGUAGGG 19 15267
BCLllA-10200 - AAGAAAAUGGGGGGGUAGGG 20 15268
BCLllA-13005 - UAAGAAAAUGGGGGGGUAGGG 21 15269
BCLllA-13006 - GU AAGAAAAUGGGGGGGUAGGG 22 15270
BCLllA-13007 - CGUAAGAAAAUGGGGGGGUAGGG 23 15271
BCLllA-13008 - CCGUAAGAAAAUGGGGGGGUAGGG 24 15272
BCLllA-13009 - AGGGGCCGCGGCGACGGG 18 15273
BCLllA-13010 - GAGGGGCCGCGGCGACGGG 19 15274
BCLllA-13011 - AGAGGGGCCGCGGCGACGGG 20 15275
BCLllA-13012 - GAGAGGGGCCGCGGCGACGGG 21 15276
BCLllA-13013 - GGAGAGGGGCCGCGGCGACGGG 22 15277
BCLllA-13014 - GGGAGAGGGGCCGCGGCGACGGG 23 15278
BCLllA-13015 - CGGGAGAGGGGCCGCGGCGACGGG 24 15279
BCLllA-13016 - GAGAGCCGUGGGACCGGG 18 15280
BCLllA-13017 - GGAGAGCCGUGGGACCGGG 19 15281
BCLllA-13018 - GGGAGAGCCGUGGGACCGGG 20 15282
BCLllA-13019 - GGGGAGAGCCGUGGGACCGGG 21 15283
BCLllA-13020 - CGGGGAGAGCCGUGGGACCGGG 22 15284
BCLllA-13021 - ACGGGGAGAGCCGUGGGACCGGG 23 15285
BCLllA-13022 - GACGGGGAGAGCCGUGGGACCGGG 24 15286
BCLllA-13023 - UAAAAAACGAUUCCCGGG 18 15287
BCLllA-13024 - CUAAAAAACGAUUCCCGGG 19 15288
BCLllA-13025 - U CU AAAAAACG AU U CCCGGG 20 15289
BCLllA-13026 - GUCUAAAAAACGAUUCCCGGG 21 15290
BCLllA-13027 - AGUCUAAAAAACGAUUCCCGGG 22 15291
BCLllA-13028 - A AG U C U AAAAAACG AUUCCCGGG 23 15292
BCLllA-13029 - CAAGUCUAAAAAACGAUUCCCGGG 24 15293
BCLllA-13030 - GGUCAAGUGUGCAGCGGG 18 15294
BCLllA-13031 - CGGUCAAGUGUGCAGCGGG 19 15295
BCLllA-10202 - ACGGUCAAGUGUGCAGCGGG 20 15296
BCLllA-13032 - CACGGUCAAGUGUGCAGCGGG 21 15297
BCLllA-13033 - UCACGGUCAAGUGUGCAGCGGG 22 15298
BCLllA-13034 - CUCACGGUCAAGUGUGCAGCGGG 23 15299 BCLllA-13035 - GCUCACGGUCAAGUGUGCAGCGGG 24 15300
BCLllA-13036 - GAGCGCGGCGGCGGCGGG 18 15301
BCLllA-13037 - CGAGCGCGGCGGCGGCGGG 19 15302
BCLllA-13038 - GCGAGCGCGGCGGCGGCGGG 20 15303
BCLllA-13039 - AGCGAGCGCGGCGGCGGCGGG 21 15304
BCLllA-13040 - GAGCGAGCGCGGCGGCGGCGGG 22 15305
BCLllA-13041 - GGAGCGAGCGCGGCGGCGGCGGG 23 15306
BCLllA-13042 - GGGAGCGAGCGCGGCGGCGGCGGG 24 15307
BCLllA-13043 - AGCGCGGCGGCGGCGGGG 18 15308
BCLllA-13044 - GAGCGCGGCGGCGGCGGGG 19 15309
BCLllA-10206 - CGAGCGCGGCGGCGGCGGGG 20 15310
BCLllA-13045 - GCGAGCGCGGCGGCGGCGGGG 21 15311
BCLllA-13046 - AGCGAGCGCGGCGGCGGCGGGG 22 15312
BCLllA-13047 - GAGCGAGCGCGGCGGCGGCGGGG 23 15313
BCLllA-13048 - GGAGCGAGCGCGGCGGCGGCGGGG 24 15314
BCLllA-13049 - CGUAAGAAAAUGGGGGGG 18 15315
BCLllA-13050 - CCGUAAGAAAAUGGGGGGG 19 15316
BCLllA-13051 - ACCGUAAGAAAAUGGGGGGG 20 15317
BCLllA-13052 - CACCGUAAGAAAAUGGGGGGG 21 15318
BCLllA-13053 - UCACCGUAAGAAAAUGGGGGGG 22 15319
BCLllA-13054 - CUCACCGUAAGAAAAUGGGGGGG 23 15320
BCLllA-13055 - ACUCACCGUAAGAAAAUGGGGGGG 24 15321
BCLllA-13056 - CACAUGCAAACCUGGGGG 18 15322
BCLllA-13057 - UCACAUGCAAACCUGGGGG 19 15323
BCLllA-10210 - CUCACAUGCAAACCUGGGGG 20 15324
BCLllA-13058 - ACUCACAUGCAAACCUGGGGG 21 15325
BCLllA-13059 - AACUCACAUGCAAACCUGGGGG 22 15326
BCLllA-13060 - CAACUCACAUGCAAACCUGGGGG 23 15327
BCLllA-13061 - ACAACUCACAUGCAAACCUGGGGG 24 15328
BCLllA-13062 - UCACAUGCAAACCUGGGG 18 15329
BCLllA-13063 - CUCACAUGCAAACCUGGGG 19 15330
BCLllA-13064 - ACUCACAUGCAAACCUGGGG 20 15331
BCLllA-13065 - AACUCACAUGCAAACCUGGGG 21 15332
BCLllA-13066 - CAACUCACAUGCAAACCUGGGG 22 15333
BCLllA-13067 - ACAACUCACAUGCAAACCUGGGG 23 15334
BCLllA-13068 - AACAACUCACAUGCAAACCUGGGG 24 15335
BCLllA-11486 - GAGUCCGCGUGUGUGGGG 18 15336
BCLllA-11487 - AGAGUCCGCGUGUGUGGGG 19 15337
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 15338
BCLllA-11488 - UUAGAGUCCGCGUGUGUGGGG 21 15339
BCLllA-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 15340
BCLllA-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 15341 BCLllA-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 15342
BCLllA-11492 - AGAGUCCGCGUGUGUGGG 18 15343
BCLllA-11493 - UAGAGUCCGCGUGUGUGGG 19 15344
BCLllA-9769 - UUAGAGUCCGCGUGUGUGGG 20 15345
BCLllA-11494 - UUUAGAGUCCGCGUGUGUGGG 21 15346
BCLllA-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 15347
BCLllA-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 15348
BCLllA-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 15349
BCLllA-13069 - CCUGGGGGUGGGAGCUGG 18 15350
BCLllA-13070 - ACCUGGGGGUGGGAGCUGG 19 15351
BCLllA-10217 - AACCUGGGGGUGGGAGCUGG 20 15352
BCLllA-13071 - AAACCUGGGGGUGGGAGCUGG 21 15353
BCLllA-13072 - CAAACCUGGGGGUGGGAGCUGG 22 15354
BCLllA-13073 - GCAAACCUGGGGGUGGGAGCUGG 23 15355
BCLllA-13074 - UGCAAACCUGGGGGUGGGAGCUGG 24 15356
BCLllA-11498 - UAGAGUCCGCGUGUGUGG 18 15357
BCLllA-11499 - UUAGAGUCCGCGUGUGUGG 19 15358
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 15359
BCLllA-11500 - UUUUAGAGUCCGCGUGUGUGG 21 15360
BCLllA-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 15361
BCLllA-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 15362
BCLllA-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 15363
BCLllA-13075 - ACU CACCG UAAGAAAAUG 18 15364
BCLllA-13076 - CACU CACCG UAAGAAAAUG 19 15365
BCLllA-10221 - CCACUCACCGUAAGAAAAUG 20 15366
BCLllA-13077 - CCCACUCACCGUAAGAAAAUG 21 15367
BCLllA-13078 - UCCCACUCACCGUAAGAAAAUG 22 15368
BCLllA-13079 - UUCCCACUCACCGUAAGAAAAUG 23 15369
BCLllA-13080 - CU U CCCACU CACCG UAAGAAAAUG 24 15370
BCLllA-13081 - AGUGAGAAAGUGGCACUG 18 15371
BCLllA-13082 - UAGUGAGAAAGUGGCACUG 19 15372
BCLllA-10222 - AUAGUGAGAAAGUGGCACUG 20 15373
BCLllA-13083 - AAUAGUGAGAAAGUGGCACUG 21 15374
BCLllA-13084 - CAAUAGUGAGAAAGUGGCACUG 22 15375
BCLllA-13085 - ACAAUAGUGAGAAAGUGGCACUG 23 15376
BCLllA-13086 - CACAAUAGUGAGAAAGUGGCACUG 24 15377
BCLllA-13087 - ACCUGGGGGUGGGAGCUG 18 15378
BCLllA-13088 - AACCUGGGGGUGGGAGCUG 19 15379
BCLllA-13089 - AAACCUGGGGGUGGGAGCUG 20 15380
BCLllA-13090 - CAAACCUGGGGGUGGGAGCUG 21 15381
BCLllA-13091 - GCAAACCUGGGGGUGGGAGCUG 22 15382
BCLllA-13092 - UGCAAACCUGGGGGUGGGAGCUG 23 15383 BCLllA-13093 - AUGCAAACCUGGGGGUGGGAGCUG 24 15384
BCLllA-13094 - ACCUCCCCUCGCCCGCUG 18 15385
BCLllA-13095 - CACCUCCCCUCGCCCGCUG 19 15386
BCLllA-10224 - CCACCUCCCCUCGCCCGCUG 20 15387
BCLllA-13096 - CCCACCUCCCCUCGCCCGCUG 21 15388
BCLllA-13097 - UCCCACCUCCCCUCGCCCGCUG 22 15389
BCLllA-13098 - CUCCCACCUCCCCUCGCCCGCUG 23 15390
BCLllA-13099 - CCUCCCACCUCCCCUCGCCCGCUG 24 15391
BCLllA-13100 - UGGGGGUGGGAGCUGGUG 18 15392
BCLllA-13101 - CUGGGGGUGGGAGCUGGUG 19 15393
BCLllA-10228 - CCUGGGGGUGGGAGCUGGUG 20 15394
BCLllA-13102 - ACCUGGGGGUGGGAGCUGGUG 21 15395
BCLllA-13103 - AACCUGGGGGUGGGAGCUGGUG 22 15396
BCLllA-13104 - AAACCUGGGGGUGGGAGCUGGUG 23 15397
BCLllA-13105 - CAAACCUGGGGGUGGGAGCUGGUG 24 15398
BCLllA-11518 - UUUUAGAGUCCGCGUGUG 18 15399
BCLllA-11519 - AUUUUAGAGUCCGCGUGUG 19 15400
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 15401
BCLllA-11520 - UCAUUUUAGAGUCCGCGUGUG 21 15402
BCLllA-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 15403
BCLllA-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 15404
BCLllA-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 15405
BCLllA-11524 - UUAGAGUCCGCGUGUGUG 18 15406
BCLllA-11525 - UUUAGAGUCCGCGUGUGUG 19 15407
BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 15408
BCLllA-11526 - AUUUUAGAGUCCGCGUGUGUG 21 15409
BCLllA-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 15410
BCLllA-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 15411
BCLllA-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 15412
BCLllA-13106 - CACU CACCG UAAGAAAAU 18 15413
BCLllA-13107 - CCACUCACCGUAAGAAAAU 19 15414
BCLllA-10232 - CCCACU CACCG UAAGAAAAU 20 15415
BCLllA-13108 - U CCCACU CACCG UAAGAAAAU 21 15416
BCLllA-13109 - UUCCCACUCACCGUAAGAAAAU 22 15417
BCLllA-13110 - CUUCCCACUCACCGUAAGAAAAU 23 15418
BCLllA-13111 - GCUUCCCACUCACCGUAAGAAAAU 24 15419
BCLllA-13112 - CGCUGCGGAGCUGUAACU 18 15420
BCLllA-13113 - CCGCUGCGGAGCUGUAACU 19 15421
BCLllA-10233 - CCCGCUGCGGAGCUGUAACU 20 15422
BCLllA-13114 - GCCCGCUGCGGAGCUGUAACU 21 15423
BCLllA-13115 - CGCCCGCUGCGGAGCUGUAACU 22 15424
BCLllA-13116 - UCGCCCGCUGCGGAGCUGUAACU 23 15425 BCLllA-13117 - CUCGCCCGCUGCGGAGCUGUAACU 24 15426
BCLllA-13118 - UAGUGAGAAAGUGGCACU 18 15427
BCLllA-13119 - AUAGUGAGAAAGUGGCACU 19 15428
BCLllA-13120 - AAUAGUGAGAAAGUGGCACU 20 15429
BCLllA-13121 - CAAUAGUGAGAAAGUGGCACU 21 15430
BCLllA-13122 - ACAAUAGUGAGAAAGUGGCACU 22 15431
BCLllA-13123 - CACAAUAGUGAGAAAGUGGCACU 23 15432
BCLllA-13124 - CCACAAUAGUGAGAAAGUGGCACU 24 15433
BCLllA-13125 - CGGUCCCUGGCUCGGCCU 18 15434
BCLllA-13126 - CCGGUCCCUGGCUCGGCCU 19 15435
BCLllA-10237 - CCCGGUCCCUGGCUCGGCCU 20 15436
BCLllA-13127 - CACCUCCCCUCGCCCGCU 18 15437
BCLllA-13128 - CCACCUCCCCUCGCCCGCU 19 15438
BCLllA-13129 - CCCACCUCCCCUCGCCCGCU 20 15439
BCLllA-13130 - UCCCACCUCCCCUCGCCCGCU 21 15440
BCLllA-13131 - CUCCCACCUCCCCUCGCCCGCU 22 15441
BCLllA-13132 - CCUCCCACCUCCCCUCGCCCGCU 23 15442
BCLllA-13133 - CCCUCCCACCUCCCCUCGCCCGCU 24 15443
BCLllA-13134 - CGAGCGCAGCCGCGGGCU 18 15444
BCLllA-13135 - CCGAGCGCAGCCGCGGGCU 19 15445
BCLllA-10241 - CCCGAGCGCAGCCGCGGGCU 20 15446
BCLllA-13136 - UCCCGAGCGCAGCCGCGGGCU 21 15447
BCLllA-13137 - UUCCCGAGCGCAGCCGCGGGCU 22 15448
BCLllA-13138 - UUUCCCGAGCGCAGCCGCGGGCU 23 15449
BCLllA-13139 - GUUUCCCGAGCGCAGCCGCGGGCU 24 15450
BCLllA-13140 - CUCCUGAGUCCGCGGAGU 18 15451
BCLllA-13141 - GCUCCUGAGUCCGCGGAGU 19 15452
BCLllA-10243 - CGCUCCUGAGUCCGCGGAGU 20 15453
BCLllA-13142 - GCGCUCCUGAGUCCGCGGAGU 21 15454
BCLllA-13143 - GGCGCUCCUGAGUCCGCGGAGU 22 15455
BCLllA-13144 - CGGCGCUCCUGAGUCCGCGGAGU 23 15456
BCLllA-13145 - CCGGCGCUCCUGAGUCCGCGGAGU 24 15457
BCLllA-13146 - AGUCAUCCCCACAAUAGU 18 15458
BCLllA-13147 - UAGUCAUCCCCACAAUAGU 19 15459
BCLllA-13148 - GUAGUCAUCCCCACAAUAGU 20 15460
BCLllA-13149 - AGUAGUCAUCCCCACAAUAGU 21 15461
BCLllA-13150 - AAGUAGUCAUCCCCACAAUAGU 22 15462
BCLllA-13151 - AAAGUAGUCAUCCCCACAAUAGU 23 15463
BCLllA-13152 - GAAAGUAGUCAUCCCCACAAUAGU 24 15464
BCLllA-13153 - UUGCUUCCCACUCACCGU 18 15465
BCLllA-13154 - GUUGCUUCCCACUCACCGU 19 15466
BCLllA-13155 - GGUUGCUUCCCACUCACCGU 20 15467 BCLllA-13156 - AGGUUGCUUCCCACUCACCGU 21 15468
BCLllA-13157 - GAGGUUGCUUCCCACUCACCGU 22 15469
BCLllA-13158 - GGAGGUUGCUUCCCACUCACCGU 23 15470
BCLllA-13159 - GGGAGGUUGCUUCCCACUCACCGU 24 15471
BCLllA-13160 - GGGGAAGUGGGUGUGCGU 18 15472
BCLllA-13161 - AGGGGAAGUGGGUGUGCGU 19 15473
BCLllA-13162 - GAGGGGAAGUGGGUGUGCGU 20 15474
BCLllA-13163 - GGAGGGGAAGUGGGUGUGCGU 21 15475
BCLllA-13164 - GGGAGGGGAAGUGGGUGUGCGU 22 15476
BCLllA-13165 - GGGGAGGGGAAGUGGGUGUGCGU 23 15477
BCLllA-13166 - CGGGGAGGGGAAGUGGGUGUGCGU 24 15478
BCLllA-13167 - GUAAGAAAAUGGGGGGGU 18 15479
BCLllA-13168 - CGUAAGAAAAUGGGGGGGU 19 15480
BCLllA-10248 - CCGUAAGAAAAUGGGGGGGU 20 15481
BCLllA-13169 - ACCGUAAGAAAAUGGGGGGGU 21 15482
BCLllA-13170 - CACCGUAAGAAAAUGGGGGGGU 22 15483
BCLllA-13171 - UCACCGUAAGAAAAUGGGGGGGU 23 15484
BCLllA-13172 - CUCACCGUAAGAAAAUGGGGGGGU 24 15485
BCLllA-13173 - ACAUGCAAACCUGGGGGU 18 15486
BCLllA-13174 - CACAUGCAAACCUGGGGGU 19 15487
BCLllA-10249 - UCACAUGCAAACCUGGGGGU 20 15488
BCLllA-13175 - CUCACAUGCAAACCUGGGGGU 21 15489
BCLllA-13176 - ACUCACAUGCAAACCUGGGGGU 22 15490
BCLllA-13177 - AACUCACAUGCAAACCUGGGGGU 23 15491
BCLllA-13178 - CAACUCACAUGCAAACCUGGGGGU 24 15492
BCLllA-13179 - CUGGGGGUGGGAGCUGGU 18 15493
BCLllA-13180 - CCUGGGGGUGGGAGCUGGU 19 15494
BCLllA-10250 - ACCUGGGGGUGGGAGCUGGU 20 15495
BCLllA-13181 - AACCUGGGGGUGGGAGCUGGU 21 15496
BCLllA-13182 - AAACCUGGGGGUGGGAGCUGGU 22 15497
BCLllA-13183 - CAAACCUGGGGGUGGGAGCUGGU 23 15498
BCLllA-13184 - GCAAACCUGGGGGUGGGAGCUGGU 24 15499
BCLllA-11572 - AUUUUAGAGUCCGCGUGU 18 15500
BCLllA-11573 - CAUUUUAGAGUCCGCGUGU 19 15501
BCLllA-11574 - UCAUUUUAGAGUCCGCGUGU 20 15502
BCLllA-11575 - UUCAUUUUAGAGUCCGCGUGU 21 15503
BCLllA-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 15504
BCLllA-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 15505
BCLllA-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 15506
BCLllA-13185 - GCGUACGGAGGAGGGUGU 18 15507
BCLllA-13186 - UGCGUACGGAGGAGGGUGU 19 15508
BCLllA-13187 - GUGCGUACGGAGGAGGGUGU 20 15509 BCLllA-13188 - UGUGCGUACGGAGGAGGGUGU 21 15510
BCLllA-13189 - GUGUGCGUACGGAGGAGGGUGU 22 15511
BCLllA-13190 - GGUGUGCGUACGGAGGAGGGUGU 23 15512
BCLllA-13191 - GGGUGUGCGUACGGAGGAGGGUGU 24 15513
BCLllA-11579 - UUUAGAGUCCGCGUGUGU 18 15514
BCLllA-11580 - UUUUAGAGUCCGCGUGUGU 19 15515
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 15516
BCLllA-11581 - CAUUUUAGAGUCCGCGUGUGU 21 15517
BCLllA-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 15518
BCLllA-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 15519
BCLllA-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 15520
BCLllA-13192 - GACUUGGGCGCUGCCCUU 18 15521
BCLllA-13193 - AGACUUGGGCGCUGCCCUU 19 15522
BCLllA-13194 - GAGACUUGGGCGCUGCCCUU 20 15523
BCLllA-13195 - GGAGACUUGGGCGCUGCCCUU 21 15524
BCLllA-13196 - UGGAGACUUGGGCGCUGCCCUU 22 15525
BCLllA-13197 - CUGGAGACUUGGGCGCUGCCCUU 23 15526
BCLllA-13198 - CCUGGAGACUUGGGCGCUGCCCUU 24 15527
BCLllA-13199 - GGUCCCUGGCUCGGCCUU 18 15528
BCLllA-13200 - CGGUCCCUGGCUCGGCCUU 19 15529
BCLllA-10256 - CCGGUCCCUGGCUCGGCCUU 20 15530
BCLllA-13201 - AAGAGGUGAGACUGGCUU 18 15531
BCLllA-13202 - AAAGAGGUGAGACUGGCUU 19 15532
BCLllA-13203 - AAAAGAGGUGAGACUGGCUU 20 15533
BCLllA-13204 - GAAAAGAGGUGAGACUGGCUU 21 15534
BCLllA-13205 - AGAAAAGAGGUGAGACUGGCUU 22 15535
BCLllA-13206 - GAGAAAAGAGGUGAGACUGGCUU 23 15536
BCLllA-13207 - GGAGAAAAGAGGUGAGACUGGCUU 24 15537
BCLllA-13208 - AUGAACAAUGCUAAGGUU 18 15538
BCLllA-13209 - AAUGAACAAUGCUAAGGUU 19 15539
BCLllA-13210 - UAAUGAACAAUGCUAAGGUU 20 15540
BCLllA-13211 - AUAAUGAACAAUGCUAAGGUU 21 15541
BCLllA-13212 - AAUAAUGAACAAUGCUAAGGUU 22 15542
BCLllA-13213 - AAAUAAUGAACAAUGCUAAGGUU 23 15543
BCLllA-13214 - AAAAUAAUGAACAAUGCUAAGGUU 24 15544
BCLllA-13215 - GCCGCUUUAUUUCUCUUU 18 15545
BCLllA-13216 - CGCCGCUUUAUUUCUCUUU 19 15546
BCLllA-13217 - CCGCCGCUUUAUUUCUCUUU 20 15547
BCLllA-13218 - UCCGCCGCUUUAUUUCUCUUU 21 15548
BCLllA-13219 - UUCCGCCGCUUUAUUUCUCUUU 22 15549
BCLllA-13220 - UUUCCGCCGCUUUAUUUCUCUUU 23 15550
BCLllA-13221 - CUUUCCGCCGCUUUAUUUCUCUUU 24 15551 Table 20A provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of
orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1 A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 20A
Figure imgf000505_0001
Table 20B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g. upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 20B
Figure imgf000506_0001
Table 20C provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the third tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 20C
Figure imgf000506_0002
BCLllA-13243 - GGGAGAAAAGAGGUGAG 17 15581
BCLllA-13244 - CAGCCCUCCAAACUUAG 17 15582
BCLllA-13245 - C U U U U CGAAAAGGAAUG 17 15583
BCLllA-13225 + CACGCGGACUCUAAAAU 17 15584
BCLllA-10006 - GAGCGCAGCCGCGGGCU 17 15585
BCLllA-13246 - GGAGUGAGUACAAGUCUAAA 20 15586
BCLllA-13247 - GGAGCUGGUGGGGAAAGGGA 20 15587
BCLllA-13248 - GGUGUCCGGGAGCAACUCUA 20 15588
BCLllA-13249 - CUGCCU UUUGUGCCGGCUCC 20 15589
BCLllA-13250 - UCUACCUGGCUUCCCUCCGC 20 15590
BCLllA-10131 - GAGGCUCAGCUCUCAACUUC 20 15591
BCLllA-13251 - UCCUCCUCU UUCCUCCUUUC 20 15592
BCLllA-13252 - CCGGGGAGAAAAGAGGUGAG 20 15593
BCLllA-13253 - CCGCAGCCCUCCAAACU UAG 20 15594
BCLllA-13254 - UCUCUUU UCGAAAAGGAAUG 20 15595
BCLllA-13235 + ACACACGCGGACUCUAAAAU 20 15596
BCLllA-10241 - CCCGAGCGCAGCCGCGGGCU 20 15597
Table 21A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and have a high level of orthogonality and starts with 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 21 A
Figure imgf000507_0001
Table 21B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 21B
Figure imgf000508_0001
BCLllA-13288 + AAAAUACUUACUGUACUGCA 20 3' 15631
BCLllA-13289 + AUUCACUGGAAACCCUGUUA 20 3' 15632
BCLllA-13290 - AAACUAUUUACAGCCAUAAC 20 3' 15633
BCLllA-13291 + AAAUACUUACUGUACUGCAG 20 3' 15634
BCLllA-13292 + UACUGUACUGCAGGGGAAUU 20 3' 15635
BCLllA-13293 - U UAGGCUGUUUUUGGAUCUU 20 3' 15636
BCLllA-13294 - CAGUGGCUUUAGGCUGUUUU 20 3' 15637
Table 21C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and starts with 5'G. It is contemplated herein that in an
embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 21C
Figure imgf000509_0001
Table 21D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 21D
Figure imgf000509_0002
BCLllA-13299 - AAAAUAAU U AG AAU AAA 17 5' 15642
BCLllA-13300 + CACAU AAAAAU U UAAGA 17 5' 15643
BCLllA-13301 + ACAU AAAAAU U U AAG AC 17 5' 15644
BCLllA-13302 - UGUAAGGCUGGGCGCAG 17 5' 15645
BCLllA-13303 - AAUGUAGAGAGGCAGAG 17 5' 15646
BCLllA-13304 - AGAAUAAAAGGCUGUUU 17 5' 15647
BCLllA-13305 - AGUAAAAUAAUUAGAAUAAA 20 5' 15648
BCLllA-13306 - U U A AG A A AG CAGUGUAAGGC 20 5' 15649
BCLllA-13307 - CAGUGUAAGGCUGGGCGCAG 20 5' 15650
BCLllA-13308 - UUUGGAAUGUAGAGAGGCAG 20 5' 15651
BCLllA-13309 - UGGAAUGUAGAGAGGCAGAG 20 5' 15652
BCLllA-13310 - AGUAUUUUCUUUCAUUG 17 3' 15653
BCLllA-13311 - UAAGUAUUUUCUUUCAU 17 3' 15654
BCLllA-13312 - AAGUAUUUUCUUUCAUU 17 3' 15655
BCLllA-13313 - UAAGUAUUUUCUUUCAUUGG 20 3' 15656
BCLllA-13314 - CAGUAAGUAUUUUCU UUCAU 20 3' 15657
BCLllA-13315 - AGUAAGUAUUUUCUUUCAUU 20 3' 15658
Table 21E provides targeting domains for removing (e.g., deleting) the enhancer region of the BCLl 1A gene by dual targeting (e.g., dual double strand cleavage). It is contemplated herein that an upstream gRNA can be paired with a downstream gRNA to guide Cas9 nuclease pairs. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B, or include a targeting domain from Group C and a second targeting domain from Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. For example, BCLl lA-13271 or BCLl lA-13264 can be combined with BCLl lA-13276; or BCLl 1A-13262 or BCLl 1A-13282 can be combined with BCLl 1A-13290 or BCLl 1 A-13280.
Table 21E
Figure imgf000510_0001
Table 22A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), have a high level of orthogonality, and start with 5'G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 22A
Figure imgf000511_0001
Table 22B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and have a high level of orthogonality. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 22B
Figure imgf000512_0001
BCLllA-13365 - U U U ACAGCCAU AACAGGG U U U CCA 24 3' 15708
BCLllA-13366 - UGAAUUGUAUAAGUAGCA 18 3' 15709
BCLllA-13367 - AGUGAAUUGUAUAAGUAGCA 20 3' 15710
BCLllA-13368 - CAGUGAAUUGUAUAAGUAGCA 21 3' 15711
BCLllA-13369 - CCAGUGAAUUGUAUAAGUAGCA 22 3' 15712
BCLllA-13370 - UCCAGUGAAUUGUAUAAGUAGCA 23 3' 15713
BCLllA-13371 - UUCCAGUGAAUUGUAUAAGUAGCA 24 3' 15714
BCLllA-13372 - CAAAACU AG AAAG U U U U A 18 3' 15715
BCLllA-13373 - AGCAAAACU AG AAAG U U U U A 20 3' 15716
BCLllA-13374 - AGUGGCUUUAGGCUGUUU 18 3' 15717
BCLllA-13375 - CAGUGGCUUUAGGCUGUUU 19 3' 15718
BCLllA-13376 - AGCAGUGGCUUUAGGCUGUUU 21 3' 15719
BCLllA-13377 - UAGCAGUGGCUUUAGGCUGUUU 22 3' 15720
Table 22C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and start with 5'G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 22C
Figure imgf000513_0001
Table 22D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 22D
Figure imgf000514_0001
Table 22E provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 22E
Figure imgf000514_0002
BCLllA-13398 + CAUAAAAAUUUAAGACGGGAAAA 23 5' 15741
BCLllA-13399 + ACAU AAAAAU U U AAG ACGGG AAAA 24 5' 15742
BCLllA-13400 + U CACAU AAAAAU U U AAG A 18 5' 15743
BCLllA-13401 + CU CACAU AAAAAU U U AAG A 19 5' 15744
BCLllA-13402 + U CU CACAU AAAAAU U U AAG A 20 5' 15745
BCLllA-13403 + AUCUCACAUAAAAAUUUAAGA 21 5' 15746
BCLllA-13404 + CAUCUCACAU A A A A A U U U A AG A 22 5' 15747
BCLllA-13405 + U CAU CU CACAU AAAAAU U U AAG A 23 5' 15748
BCLllA-13406 + CU CAU CU CACAU AAAAAU U U AAG A 24 5' 15749
BCLllA-13407 + AAUU U AAG ACGGG AAAAC 18 5' 15750
BCLllA-13408 + AAAU U U AAG ACGGG AAAAC 19 5' 15751
BCLllA-13409 + AAAAU U U AAG ACGGG AAAAC 20 5' 15752
BCLllA-13410 + AAAAAU U U AAG ACGGG AAAAC 21 5' 15753
BCLllA-13411 + UAAAAAUUUAAGACGGGAAAAC 22 5' 15754
BCLllA-13412 + AU AAAAAU U U AAG ACGGG AAAAC 23 5' 15755
BCLllA-13413 + CAUAAAAAUUUAAGACGGGAAAAC 24 5' 15756
BCLllA-13414 + CACAU AAAAAU U U AAG AC 18 5' 15757
BCLllA-13415 + U CACAU AAAAAU U U AAG AC 19 5' 15758
BCLllA-13416 + CU CACAU AAAAAU U U AAG AC 20 5' 15759
BCLllA-13417 + UCUCACAUAAAAAUUUAAGAC 21 5' 15760
BCLllA-13418 + AUCUCACAUAAAAAUUUAAGAC 22 5' 15761
BCLllA-13419 + CAUCUCACAU A A A A A U U U A AG AC 23 5' 15762
BCLllA-13420 + U CAU CU CACAU AAAAAU U U AAG AC 24 5' 15763
BCLllA-13421 + CU CACAU AAAAAU U U AAG 18 5' 15764
BCLllA-13422 + U C U C AC A U A A A A A U U U A AG 19 5' 15765
BCLllA-13423 + AUCUCACAU A A A A A U U U A AG 20 5' 15766
BCLllA-13424 + C A U C U C AC A U A A A A A U U U A AG 21 5' 15767
BCLllA-13425 + U CAU CU CACAU AAAAAU UU AAG 22 5' 15768
BCLllA-13426 + CU CAU CU CACAU AAAAAU U U AAG 23 5' 15769
BCLllA-13427 + GCUCAUCUCACAUAAAAAUUUAAG 24 5' 15770
BCLllA-13428 + CAACUUGUGUUGCACUAG 18 5' 15771
BCLllA-13429 + ACAACUUGUGUUGCACUAG 19 5' 15772
BCLllA-13430 + CA CAACUUGUGUUGCACUAG 20 5' 15773
BCLllA-13431 + ACACAACUUGUGUUGCACUAG 21 5' 15774
BCLllA-13432 + UACACAACUUGUGU UGCACUAG 22 5' 15775
BCLllA-13433 + CUACACAACUUGUGUUGCACUAG 23 5' 15776
BCLllA-13434 + UCUACACAACUUGUGUUGCACUAG 24 5' 15777
BCLllA-13435 + AACAGGAAGAUGCAUUCU 18 5' 15778
BCLllA-13436 + AAACAGGAAGAUGCAUUCU 19 5' 15779
BCLllA-13437 + AAAACAGGAAGAUGCAUUCU 20 5' 15780
BCLllA-13438 + GAAAACAGGAAGAUGCAUUCU 21 5' 15781
BCLllA-13439 + GGAAAACAGGAAGAUGCAUUCU 22 5' 15782 BCLllA-13440 + GGGAAAACAGGAAGAUGCAUUCU 23 5' 15783
BCLllA-13441 + CG G G A A A AC AG GAAGAUGCAUUCU 24 5' 15784
BCLllA-13442 + U UAUUUUACUAGUGAAUU 18 5' 15785
BCLllA-13443 + AUUAUUUUACUAGUGAAUU 19 5' 15786
BCLllA-13444 + AAUUAUUUUACUAGUGAAUU 20 5' 15787
BCLllA-13445 + UAAUUAUUUUACUAGUGAAUU 21 5' 15788
BCLllA-13446 + CUAAUUAUUUUACUAGUGAAUU 22 5' 15789
BCLllA-13447 + UCUAAUUAUUUUACUAGUGAAUU 23 5' 15790
BCLllA-13448 + UUCUAAUUAUUUUACUAGUGAAUU 24 5' 15791
BCLllA-13449 + AAAACAGGAAGAUGCAUU 18 5' 15792
BCLllA-13450 + GAAAACAGGAAGAUGCAUU 19 5' 15793
BCLllA-13451 + GG AAAACAGGAAGAUGCAUU 20 5' 15794
BCLllA-13452 + GGGAAAACAGGAAGAUGCAUU 21 5' 15795
BCLllA-13453 + CGGGAAAACAGGAAGAUGCAUU 22 5' 15796
BCLllA-13454 + ACGGGAAAACAGGAAGAUGCAUU 23 5' 15797
BCLllA-13455 + GACGGG AAAACAGGAAGAUGCAUU 24 5' 15798
BCLllA-13456 - U UGGAAUGUAGAGAGGCA 18 5' 15799
BCLllA-13457 - U UUGGAAUGUAGAGAGGCA 19 5' 15800
BCLllA-13458 - U UUUGGAAUGUAGAGAGGCA 20 5' 15801
BCLllA-13459 - GUUUUGGAAUGUAGAGAGGCA 21 5' 15802
BCLllA-13460 - UGUUUUGGAAUGUAGAGAGGCA 22 5' 15803
BCLllA-13461 - CUGUUUUGGAAUGUAGAGAGGCA 23 5' 15804
BCLllA-13462 - GCUGUUUUGGAAUGUAGAGAGGCA 24 5' 15805
BCLllA-13463 - CAACACAAGUUGUGUAGA 18 5' 15806
BCLllA-13464 - GCAACACAAGUUGUGUAGA 19 5' 15807
BCLllA-13465 - UGCAACACAAGUUGUGUAGA 20 5' 15808
BCLllA-13466 - G U G C AACAC AAG UUGUGUAGA 21 5' 15809
BCLllA-13467 - AGUGCAACACAAGUUGUGUAGA 22 5' 15810
BCLllA-13468 - U AG U G C A AC AC A AG UUGUGUAGA 23 5' 15811
BCLllA-13469 - C U AG U G C AACAC AAG UUGUGUAGA 24 5' 15812
BCLllA-13470 - AGGCUGUUUUGGAAUGUA 18 5' 15813
BCLllA-13471 - AAGGCUGUUUUGGAAUGUA 19 5' 15814
BCLllA-13472 - AAAGGCUGUUUUGGAAUGUA 20 5' 15815
BCLllA-13473 - AAAAGGCUGUUUUGGAAUGUA 21 5' 15816
BCLllA-13474 - UAAAAGGCUGUUUUGGAAUGUA 22 5' 15817
BCLllA-13475 - AUAAAAGGCUGUUUUGGAAUGUA 23 5' 15818
BCLllA-13476 - AAUAAAAGGCUGUUUUGGAAUGUA 24 5' 15819
BCLllA-13477 - UGGAAUGUAGAGAGGCAG 18 5' 15820
BCLllA-13478 - U UGGAAUGUAGAGAGGCAG 19 5' 15821
BCLllA-13479 - U UUGGAAUGUAGAGAGGCAG 20 5' 15822
BCLllA-13480 - U UUUGGAAUGUAGAGAGGCAG 21 5' 15823
BCLllA-13481 - GU UUUGGAAUGUAGAGAGGCAG 22 5' 15824 BCLllA-13482 - UGUUUUGGAAUGUAGAGAGGCAG 23 5' 15825
BCLllA-13483 - CUGUUUUGGAAUGUAGAGAGGCAG 24 5' 15826
BCLllA-13484 - CUUAAAUUUUUAUGUGAG 18 5' 15827
BCLllA-13485 - UCUUAAAUUUUUAUGUGAG 19 5' 15828
BCLllA-13486 - GUCUUAAAUUUUUAUGUGAG 20 5' 15829
BCLllA-13487 - CGUCUUAAAUUUUUAUGUGAG 21 5' 15830
BCLllA-13488 - CCGUCUUAAAUUUUUAUGUGAG 22 5' 15831
BCLllA-13489 - CCCGUCUUAAAUUUUUAUGUGAG 23 5' 15832
BCLllA-13490 - UCCCGUCUUAAAUUUUUAUGUGAG 24 5' 15833
BCLllA-13491 - U A AG A A AG C AG U G U A AG G 18 5' 15834
BCLllA-13492 - U U A AG A A AG C AG U G U A AG G 19 5' 15835
BCLllA-13493 - AUUAAGAAAGCAGUGUAAGG 20 5' 15836
BCLllA-13494 - A A U U A AG A A AG C AG U G U A AG G 21 5' 15837
BCLllA-13495 - U A A U U A AG A A AG C AG U G U A AG G 22 5' 15838
BCLllA-13496 - GUAAU U AAG AAAGCAG UG U AAGG 23 5' 15839
BCLllA-13497 - U G U A A U U A AG A A AG CAGUGUAAGG 24 5' 15840
BCLllA-13498 - UUUUGGAAUGUAGAGAGG 18 5' 15841
BCLllA-13499 - GUUUUGGAAUGUAGAGAGG 19 5' 15842
BCLllA-13500 - UGUUUUGGAAUGUAGAGAGG 20 5' 15843
BCLllA-13501 - CUGUUUUGGAAUGUAGAGAGG 21 5' 15844
BCLllA-13502 - GCUGUUUUGGAAUGUAGAGAGG 22 5' 15845
BCLllA-13503 - GGCUGUUUUGGAAUGUAGAGAGG 23 5' 15846
BCLllA-13504 - AGGCUGUUUUGGAAUGUAGAGAGG 24 5' 15847
BCLllA-13505 - AAAGGCUGUUUUGGAAUG 18 5' 15848
BCLllA-13506 - AAAAGGCUGUUUUGGAAUG 19 5' 15849
BCLllA-13507 - UAAAAGGCUGUUUUGGAAUG 20 5' 15850
BCLllA-13508 - AUAAAAGGCUGUUUUGGAAUG 21 5' 15851
BCLllA-13509 - AAUAAAAGGCUGUUUUGGAAUG 22 5' 15852
BCLllA-13510 - GAAUAAAAGGCUGUUUUGGAAUG 23 5' 15853
BCLllA-13511 - AGAAUAAAAGGCUGUUUUGGAAUG 24 5' 15854
BCLllA-13512 - AG U G CAAC ACAAG U U G U G 18 5' 15855
BCLllA-13513 - U AG U G CAAC ACAAG U U G U G 19 5' 15856
BCLllA-13514 - CUAGUGCAACACAAGUUGUG 20 5' 15857
BCLllA-13515 - CCUAGUGCAACACAAGUUGUG 21 5' 15858
BCLllA-13516 - ACCUAGUGCAACACAAGUUGUG 22 5' 15859
BCLllA-13517 - CACCUAGUGCAACACAAGUUGUG 23 5' 15860
BCLllA-13518 - UCACCUAGUGCAACACAAGUUGUG 24 5' 15861
BCLllA-13519 - CCCGUCUUAAAUUUUUAU 18 5' 15862
BCLllA-13520 - UCCCGUCUUAAAUUUUUAU 19 5' 15863
BCLllA-13521 - UUCCCGUCUUAAAUUUUUAU 20 5' 15864
BCLllA-13522 - UUUCCCGUCUUAAAUUUUUAU 21 5' 15865
BCLllA-13523 - UUUUCCCGUCUUAAAUUUUUAU 22 5' 15866 BCLllA-13524 - GU UUUCCCGUCUUAAAUUUUUAU 23 5' 15867
BCLllA-13525 - UGUUUUCCCGUCUUAAAUUUUUAU 24 5' 15868
BCLllA-13526 - GAGCACACUGCUGUAAUU 18 5' 15869
BCLllA-13527 - UGAGCACACUGCUGUAAUU 19 5' 15870
BCLllA-13528 - AUGAGCACACUGCUGUAAUU 20 5' 15871
BCLllA-13529 - GAUGAGCACACUGCUGUAAUU 21 5' 15872
BCLllA-13530 - AGAUGAGCACACUGCUGUAAUU 22 5' 15873
BCLllA-13531 - GAGAUGAGCACACUGCUGUAAUU 23 5' 15874
BCLllA-13532 - UGAGAUGAGCACACUGCUGUAAUU 24 5' 15875
BCLllA-13533 - U UAGAAUAAAAGGCUGUU 18 5' 15876
BCLllA-13534 - AU U AG AAU AAAAGG CUG U U 19 5' 15877
BCLllA-13535 - AAUUAGAAUAAAAGGCUGUU 20 5' 15878
BCLllA-13536 - U AAU U AG AAU AAAAGG CUG U U 21 5' 15879
BCLllA-13537 - AUAAUUAGAAUAAAAGGCUGUU 22 5' 15880
BCLllA-13538 - AAU AAU U AG AAU AAAAGG CUG U U 23 5' 15881
BCLllA-13539 - AAAUAAUUAGAAUAAAAGGCUGUU 24 5' 15882
BCLllA-13540 + UUUCAUUUUUUGCUGACA 18 3' 15883
BCLllA-13541 + GUUUCAUUUU UUGCUGACA 19 3' 15884
BCLllA-13542 + UGUUUCAUUU UUUGCUGACA 20 3' 15885
BCLllA-13543 + UUGUUUCAUU UUUUGCUGACA 21 3' 15886
BCLllA-13544 + UUUGUUUCAU UUUUUGCUGACA 22 3' 15887
BCLllA-13545 + UUUUGUUUCAUUUUUUGCUGACA 23 3' 15888
BCLllA-13546 + UUUUUGUUUCAUUUUUUGCUGACA 24 3' 15889
BCLllA-13547 + AAUAGUUUGCUUCCCCCA 18 3' 15890
BCLllA-13548 + AAAUAGUUUGCUUCCCCCA 19 3' 15891
BCLllA-13549 + UAAAUAGUUUGCUUCCCCCA 20 3' 15892
BCLllA-13550 + GUAAAUAGUUUGCUUCCCCCA 21 3' 15893
BCLllA-13551 + UGUAAAUAGUUUGCUUCCCCCA 22 3' 15894
BCLllA-13552 + CUGUAAAUAGUUUGCUUCCCCCA 23 3' 15895
BCLllA-13553 + GCUGUAAAUAGUUUGCUUCCCCCA 24 3' 15896
BCLllA-13554 + AAUACUUACUGUACUGCA 18 3' 15897
BCLllA-13555 + AAAUACUUACUGUACUGCA 19 3' 15898
BCLllA-13556 + AAAAUACUUACUGUACUGCA 20 3' 15899
BCLllA-13557 + GAAAAUACUUACUGUACUGCA 21 3' 15900
BCLllA-13558 + AGAAAAUACUUACUGUACUGCA 22 3' 15901
BCLllA-13559 + AAGAAAAUACUUACUGUACUGCA 23 3' 15902
BCLllA-13560 + AAAGAAAAUACUUACUGUACUGCA 24 3' 15903
BCLllA-13561 + UGCUACUUAUACAAU UCA 18 3' 15904
BCLllA-13562 + GUGCUACUUAUACAAUUCA 19 3' 15905
BCLllA-13563 + AGUGCUACUUAUACAAUUCA 20 3' 15906
BCLllA-13564 + CAGUGCUACUUAUACAAUUCA 21 3' 15907
BCLllA-13565 + UCAGUGCUACUUAUACAAUUCA 22 3' 15908 BCLllA-13566 + CUCAGUGCUACUUAUACAAUUCA 23 3' 15909
BCLllA-13567 + ACUCAGUGCUACUUAUACAAUUCA 24 3' 15910
BCLllA-13568 + GUUUGCUUCCCCCAAUGA 18 3' 15911
BCLllA-13569 + AGUUUGCUUCCCCCAAUGA 19 3' 15912
BCLllA-13570 + UAGUUUGCUUCCCCCAAUGA 20 3' 15913
BCLllA-13571 + AUAGUUUGCUUCCCCCAAUGA 21 3' 15914
BCLllA-13572 + AAUAGUUUGCUUCCCCCAAUGA 22 3' 15915
BCLllA-13573 + AAAUAGUUUGCUUCCCCCAAUGA 23 3' 15916
BCLllA-13574 + UAAAUAGUUUGCUUCCCCCAAUGA 24 3' 15917
BCLllA-13575 + UUUCUAGUUU UGCUUAAC 18 3' 15918
BCLllA-13576 + CUUUCUAGU UUUGCUUAAC 19 3' 15919
BCLllA-13577 + ACUUUCUAGUUUUGCU UAAC 20 3' 15920
BCLllA-13578 + AACUUUCUAGUUU UGCUUAAC 21 3' 15921
BCLllA-13579 + AAACUUUCUAGUUUUGCUUAAC 22 3' 15922
BCLllA-13580 + AAAACUUUCUAGUUUUGCUUAAC 23 3' 15923
BCLllA-13581 + UAAAACUUUCUAGUUU UGCUUAAC 24 3' 15924
BCLllA-13582 + GCUACUUAUACAAUUCAC 18 3' 15925
BCLllA-13583 + UGCUACUUAUACAAUUCAC 19 3' 15926
BCLllA-13584 + GUGCUACUUAUACAAUUCAC 20 3' 15927
BCLllA-13585 + AGUGCUACUUAUACAAU UCAC 21 3' 15928
BCLllA-13586 + CAGUGCUACUUAUACAAUUCAC 22 3' 15929
BCLllA-13587 + UCAGUGCUACUUAUACAAUUCAC 23 3' 15930
BCLllA-13588 + CUCAGUGCUACUUAUACAAUUCAC 24 3' 15931
BCLllA-13589 + AAAUACUUACUGUACUGC 18 3' 15932
BCLllA-13590 + AAAAUACUUACUGUACUGC 19 3' 15933
BCLllA-13591 + GAAAAUACUUACUGUACUGC 20 3' 15934
BCLllA-13592 + AGAAAAUACUUACUGUACUGC 21 3' 15935
BCLllA-13593 + AAGAAAAUACUUACUGUACUGC 22 3' 15936
BCLllA-13594 + AAAGAAAAUACUUACUGUACUGC 23 3' 15937
BCLllA-13595 + GAAAGAAAAUACUUACUGUACUGC 24 3' 15938
BCLllA-13596 + AAAAUACUUACUGUACUG 18 3' 15939
BCLllA-13597 + GAAAAUACUUACUGUACUG 19 3' 15940
BCLllA-13598 + AGAAAAUACUUACUGUACUG 20 3' 15941
BCLllA-13599 + AAGAAAAUACUUACUGUACUG 21 3' 15942
BCLllA-13600 + AAAGAAAAUACUUACUGUACUG 22 3' 15943
BCLllA-13601 + GAAAGAAAAUACUUACUGUACUG 23 3' 15944
BCLllA-13602 + UGAAAGAAAAUACUUACUGUACUG 24 3' 15945
BCLllA-13603 - GU UCUGUGUCAG C A A A A A 18 3' 15946
BCLllA-13604 - AGUUCUGUGUCAGCAAAAA 19 3' 15947
BCLllA-13605 - GAGUUCUGUGUCAGCAAAAA 20 3' 15948
BCLllA-13606 - UGAGUUCUGUGUCAGCAAAAA 21 3' 15949
BCLllA-13607 - CUGAGUUCUGUGUCAGCAAAAA 22 3' 15950 BCLllA-13608 - ACUGAGUUCUGUGU CAG C AAAAA 23 3' 15951
BCLllA-13609 - CACUGAGUUCUGUGU CAG C AAAAA 24 3' 15952
BCLllA-13610 - AGUAAGUAUUUUCUUUCA 18 3' 15953
BCLllA-13611 - CAGUAAGUAUUUUCUUUCA 19 3' 15954
BCLllA-13612 - ACAGUAAGUAUUUUCUUUCA 20 3' 15955
BCLllA-13613 - UACAGUAAGUAUUUUCUUUCA 21 3' 15956
BCLllA-13614 - GUACAGUAAGUAUUUUCUUUCA 22 3' 15957
BCLllA-13615 - AGUACAGUAAGUAUUUUCUUUCA 23 3' 15958
BCLllA-13616 - CAGUACAGUAAGUAUUUUCUUUCA 24 3' 15959
BCLllA-13617 - UUUCAUGUUAAGCAAAAC 18 3' 15960
BCLllA-13618 - UUUUCAUGUUAAGCAAAAC 19 3' 15961
BCLllA-13619 - AUUUUCAUGUUAAGCAAAAC 20 3' 15962
BCLllA-13620 - UAUUUUCAUGUUAAGCAAAAC 21 3' 15963
BCLllA-13621 - UUAUUUUCAUGUUAAGCAAAAC 22 3' 15964
BCLllA-13622 - AUUAUUUUCAUGU U AAGCAAAAC 23 3' 15965
BCLllA-13623 - UAUUAUUUUCAUGUUAAGCAAAAC 24 3' 15966
BCLllA-13624 - AGUAUUUUCUUUCAUUGG 18 3' 15967
BCLllA-13625 - AAGUAUUUUCUUUCAUUGG 19 3' 15968
BCLllA-13626 - UAAGUAUUUUCUUUCAUUGG 20 3' 15969
BCLllA-13627 - GUAAGUAUUUUCUUUCAUUGG 21 3' 15970
BCLllA-13628 - AGUAAGUAUUUUCUUUCAUUGG 22 3' 15971
BCLllA-13629 - CAGUAAGUAUUUUCUUUCAUUGG 23 3' 15972
BCLllA-13630 - ACAGUAAGUAUUUUCUUUCAUUGG 24 3' 15973
BCLllA-13631 - AAGUAUUUUCUUUCAUUG 18 3' 15974
BCLllA-13632 - UAAGUAUUUUCUUUCAUUG 19 3' 15975
BCLllA-13633 - GUAAGUAUUUUCUUUCAUUG 20 3' 15976
BCLllA-13634 - AGUAAGUAUUUUCUUUCAUUG 21 3' 15977
BCLllA-13635 - CAGUAAGUAUUUUCUUUCAUUG 22 3' 15978
BCLllA-13636 - ACAGUAAGUAUUUUCUUUCAUUG 23 3' 15979
BCLllA-13637 - UACAGUAAGUAUUUUCUUUCAUUG 24 3' 15980
BCLllA-13638 - GUAAGUAUUUUCUUUCAU 18 3' 15981
BCLllA-13639 - AGUAAGUAUUUUCUUUCAU 19 3' 15982
BCLllA-13640 - CAGUAAGUAUUUUCUUUCAU 20 3' 15983
BCLllA-13641 - ACAGUAAGUAUUUUCUUUCAU 21 3' 15984
BCLllA-13642 - UACAGUAAGUAUUUUCUUUCAU 22 3' 15985
BCLllA-13643 - GUACAGUAAGUAUUUUCUUUCAU 23 3' 15986
BCLllA-13644 - AGUACAGUAAGUAUUUUCUUUCAU 24 3' 15987
BCLllA-13645 - UUGGCUAUUGAUACUGAU 18 3' 15988
BCLllA-13646 - UUUGGCUAUUGAUACUGAU 19 3' 15989
BCLllA-13647 - CUUUGGCUAUUGAUACUGAU 20 3' 15990
BCLllA-13648 - UCUUUGGCUAUUGAUACUGAU 21 3' 15991
BCLllA-13649 - AUCUUUGGCUAUUGAUACUGAU 22 3' 15992 BCLllA-13650 - GAUCUUUGGCUAUUGAUACUGAU 23 3' 15993
BCLllA-13651 - GGAUCUUUGGCUAUUGAUACUGAU 24 3' 15994
BCLllA-13652 - UAAGUAUUUUCUUUCAUU 18 3' 15995
BCLllA-13653 - GUAAGUAUUUUCUU UCAUU 19 3' 15996
BCLllA-13654 - AGUAAGUAUUUUCUUUCAUU 20 3' 15997
BCLllA-13655 - CAGUAAGUAUUUUCUU UCAUU 21 3' 15998
BCLllA-13656 - ACAGUAAGUAUUUUCUUUCAUU 22 3' 15999
BCLllA-13657 - UACAGUAAGUAUUUUCUUUCAUU 23 3' 16000
BCLllA-13658 - GUACAGUAAGUAUUUUCUUUCAUU 24 3' 16001
Table 23A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), have a high level of orthogonality, and start with 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 23A
Figure imgf000521_0001
Table 23B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 23B
Figure imgf000521_0002
Strand Site NO:
Length
BCLllA-13660 + UCGGUAAAACUUUCUAG 17 3' 16003
BCLllA-13661 - UUUGGAUCUUUGGCUAUUGA 20 3' 16004
BCLllA-13662 + CCCUGU UAUGGCUGUAAAUA 20 3' 16005
BCLllA-13663 + AAUUCGGUAAAACUUUCUAG 20 3' 16006
Table 23C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11 A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 23C
Figure imgf000522_0001
Table 24A provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and have a high level of orthogonality. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). Table 24A
Figure imgf000522_0002
HBB-71 - GU UACAAGACAGGUUUA 17 16014
HBB-72 - AGGAGACCAAUAGAAAC 17 16015
HBB-37 + CGUUCACCUUGCCCCAC 17 16016
HBB-3 + ACGGCAGACUUCUCCAC 17 16017
HBB-41 - U AU CAAGG U U ACAAG AC 17 16018
HBB-73 + ACU UUUAUGCCCAGCCC 17 16019
HBB-74 - GGCUGGGCAUAAAAGUC 17 16020
HBB-4 + ACUUCUCCACAGGAGUC 17 16021
HBB-75 - AAUAGAAACUGGGCAUG 17 16022
HBB-38 - CUGCCGUUACUGCCCUG 17 16023
HBB-13 - GGAUGAAGUUGGUGGUG 17 16024
HBB-12 - GCCGUUACUGCCCUGUG 17 16025
HBB-76 + ACAUGCCCAGUUUCUAU 17 16026
HBB-77 - GGAGACCAAUAGAAACU 17 16027
HBB-15 - GUGAACGUGGAUGAAGU 17 16028
HBB-47 - UGCCGUUACUGCCCUGU 17 16029
HBB-39 + CUUGCCCCACAGGGCAGUAA 20 16030
HBB-30 + CACGUUCACCUUGCCCCACA 20 16031
HBB-7 + CACAGGAGUCAGGUGCACCA 20 16032
HBB-78 - AGCAGGGAGGGCAGGAGCCA 20 16033
HBB-36 - CGUUACUGCCCUGUGGGGCA 20 16034
HBB-79 - AGGGCUGGGCAUAAAAGUCA 20 16035
HBB-22 + A AG C A A A U G U A AG C A A U AG A 20 16036
HBB-80 - AAGGU U ACAAG ACAGG U U U A 20 16037
HBB-81 - UUAAGGAGACCAAUAGAAAC 20 16038
HBB-2 + GUAACGGCAGACUUCUCCAC 20 16039
HBB-49 - UGGUAUCAAGGUUACAAGAC 20 16040
HBB-82 + CUGACU UUUAUGCCCAGCCC 20 16041
HBB-43 - UGAAGUUGGUGGUGAGGCCC 20 16042
HBB-83 - GAGCAGGGAGGGCAGGAGCC 20 16043
HBB-84 - CAGGGCUGGGCAUAAAAGUC 20 16044
HBB-8 + CAGACUUCUCCACAGGAGUC 20 16045
HBB-16 - GUGAACGUGGAUGAAGUUGG 20 16046
HBB-85 - ACCAAUAGAAACUGGGCAUG 20 16047
HBB-27 - AGUCUGCCGUUACUGCCCUG 20 16048
HBB-35 - CGUGGAUGAAGUUGGUGGUG 20 16049
HBB-42 - UCUGCCGUUACUGCCCUGUG 20 16050
HBB-86 - UAAGGAGACCAAUAGAAACU 20 16051
HBB-9 - GAAGUUGGUGGUGAGGCCCU 20 16052
HBB-87 - GGAGGGCAGGAGCCAGGGCU 20 16053
HBB-23 - AAGGUGAACGUGGAUGAAGU 20 16054
HBB-14 - GUCUGCCGU UACUGCCCUGU 20 16055 Table 24B provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the second tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and start with a 5'G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Table 24B
Figure imgf000524_0001
Table 24C provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the third tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V). It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Table 24C
Figure imgf000524_0002
H BB-51 + U UGAUACCAACCUGCCC 17 16070
H BB-91 - CAGGGAGGGCAGGAGCC 17 16071
H BB-92 - AGGGCAGGAGCCAGGGC 17 16072
H BB-21 - AACG UGGAUGAAG U UGG 17 16073
H BB-24 + ACCAUGG UGUCUG U U UG 17 16074
H BB-44 - UGAGGCCCUGGGCAGG U 17 16075
H BB-34 + CCU UGAUACCAACCUGCCCA 20 16076
H BB-32 - CCCUGGGCAGG U UGGUAUCA 20 16077
H BB-31 + CCACG U U CACCU U GCCCCAC 20 16078
H BB-26 + ACCU UGAUACCAACCUGCCC 20 16079
H BB-52 - U UGGUGGUGAGGCCCUGGGC 20 16080
H BB-33 - CCUG UGGGGCAAGGUGAACG 20 16081
H BB-6 - CAUGG UGCACCUGACUCCUG 20 16082
H BB-46 + UGCACCAUGG UG UCUG U U UG 20 16083
H BB-50 - UGG UGAGGCCCUGGGCAGG U 20 16084
Table 24D provides targeting domains for correcting a mutation (e.g., E6V) in the HBB gene by dual targeting (e.g., dual single strand cleavages). In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B in Table 24D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B in Table 24D (for S. pyogenes). For example, HBB-9 or HBB-20 can be combined with HBB-11 or HBB-39.
Table 24D
Figure imgf000525_0001
Table 25A provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V), and have a high level of orthogonality. The PAM is NNGRRT. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Table 25A
Figure imgf000526_0001
Table 25B provides exemplary targeting domains for correcting a mutation (e.g., E6V) the HBB gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V), and the PAM is NNGRRV. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase).
Table 25B
Figure imgf000526_0002
HBB-109 + CAUCCACGUUCACCUUGCCCCA 22 16103
HBB-110 + UCAUCCACGUUCACCUUGCCCCA 23 16104
HBB-111 + UUCAUCCACGUUCACCUUGCCCCA 24 16105
HBB-112 + UAACGGCAGACUUCUCCA 18 16106
HBB-113 + GUAACGGCAGACUUCUCCA 19 16107
HBB-69 + AGUAACGGCAGACUUCUCCA 20 16108
HBB-114 + CAGUAACGGCAGACUUCUCCA 21 16109
HBB-115 + GCAGUAACGGCAGACUUCUCCA 22 16110
HBB-116 + GGCAGUAACGGCAGACUUCUCCA 23 16111
HBB-117 + GGGCAGUAACGGCAGACUUCUCCA 24 16112
HBB-118 + GUCUGUUUGAGGUUGCUA 18 16113
HBB-119 + UGUCUGUUUGAGGUUGCUA 19 16114
HBB-66 + GUGUCUGUUUGAGGUUGCUA 20 16115
HBB-120 + GGUGUCUGUUUGAGGUUGCUA 21 16116
HBB-121 + UGGUGUCUGUUUGAGGUUGCUA 22 16117
HBB-122 + AUGGUGUCUGUUUGAGGUUGCUA 23 16118
HBB-123 + CAUGGUGUCUGUUUGAGGUUGCUA 24 16119
HBB-124 + CCUUGAUACCAACCUGCC 18 16120
HBB-125 + ACCUUGAUACCAACCUGCC 19 16121
HBB-57 + AACCUUGAUACCAACCUGCC 20 16122
HBB-126 + UAACCUUGAUACCAACCUGCC 21 16123
HBB-127 + GUAACCUUGAUACCAACCUGCC 22 16124
HBB-128 + UGUAACCUUGAUACCAACCUGCC 23 16125
HBB-129 + UUGUAACCUUGAUACCAACCUGCC 24 16126
HBB-130 + GUGCACCAUGGUGUCUGU 18 16127
HBB-131 + GGUGCACCAUGGUGUCUGU 19 16128
HBB-62 + AGGUGCACCAUGGUGUCUGU 20 16129
HBB-132 + CAGGUGCACCAUGGUGUCUGU 21 16130
HBB-133 + UCAGGUGCACCAUGGUGUCUGU 22 16131
HBB-134 + GUCAGGUGCACCAUGGUGUCUGU 23 16132
HBB-135 + AGUCAGGUGCACCAUGGUGUCUGU 24 16133
HBB-136 + UAGUGAACACAGUUGUGU 18 16134
HBB-137 + CUAGUGAACACAGUUGUGU 19 16135
HBB-59 + GCUAGUGAACACAGUUGUGU 20 16136
HBB-138 + UGCUAGUGAACACAGUUGUGU 21 16137
HBB-139 + UUGCUAGUGAACACAGUUGUGU 22 16138
HBB-140 + GUUGCUAGUGAACACAGUUGUGU 23 16139
HBB-141 + GGUUGCUAGUGAACACAGUUGUGU 24 16140
HBB-142 - UAAGGAGACCAAUAGAAA 18 16141
HBB-143 - UUAAGGAGACCAAUAGAAA 19 16142
HBB-144 - U U UAAGGAGACCAAUAGAAA 20 16143
HBB-145 - GU UUAAGGAGACCAAUAGAAA 21 16144 HBB-146 - GG U U U AAGG AG ACCAAU AG AAA 22 16145
HBB-147 - AGG U U U AAGG AG ACCAAU AG AAA 23 16146
HBB-148 - CAGG U U U AAGG AG ACCAAU AG AAA 24 16147
HBB-149 - CAGGUUUAAGGAGACCAA 18 16148
HBB-150 - ACAGGUUUAAGGAGACCAA 19 16149
HBB-151 - GACAGGUUUAAGGAGACCAA 20 16150
HBB-152 - AG ACAGG U U U AAGG AG ACCAA 21 16151
HBB-153 - AAGACAGGUUUAAGGAGACCAA 22 16152
HBB-154 - CAAGACAGGUUUAAGGAGACCAA 23 16153
HBB-155 - ACAAG ACAGG U U U AAGG AG ACCAA 24 16154
HBB-156 - GG U U ACAAG ACAGG U U U A 18 16155
HBB-157 - AGG U U ACAAG ACAGG U U U A 19 16156
HBB-80 - AAGG U U ACAAG ACAGG U U U A 20 16157
HBB-158 - CAAGG U U ACAAG ACAGG U U U A 21 16158
HBB-159 - UCAAGGUUACAAGACAGGUUUA 22 16159
HBB-160 - AU CAAGG U U ACAAG ACAGG U U U A 23 16160
HBB-161 - U AU CAAGG U U ACAAG ACAGG U U U A 24 16161
HBB-162 - GAAGUUGGUGGUGAGGCC 18 16162
HBB-163 - UGAAGUUGGUGGUGAGGCC 19 16163
HBB-68 - AUGAAGUUGGUGGUGAGGCC 20 16164
HBB-164 - GAUGAAGUUGGUGGUGAGGCC 21 16165
HBB-165 - GGAUGAAGUUGGUGGUGAGGCC 22 16166
HBB-166 - UGGAUGAAGUUGGUGGUGAGGCC 23 16167
HBB-167 - GUGGAUGAAGUUGGUGGUGAGGCC 24 16168
HBB-168 - ACUGCCCUGUGGGGCAAG 18 16169
HBB-169 - UACUGCCCUGUGGGGCAAG 19 16170
HBB-65 - UUACUGCCCUGUGGGGCAAG 20 16171
HBB-170 - GU UACUGCCCUGUGGGGCAAG 21 16172
HBB-171 - CGUUACUGCCCUGUGGGGCAAG 22 16173
HBB-172 - CCGUUACUGCCCUGUGGGGCAAG 23 16174
HBB-173 - GCCGUUACUGCCCUGUGGGGCAAG 24 16175
HBB-174 - GGAGGGCAGGAGCCAGGG 18 16176
HBB-175 - GGGAGGGCAGGAGCCAGGG 19 16177
HBB-176 - AGGGAGGGCAGGAGCCAGGG 20 16178
HBB-177 - CAGGGAGGGCAGGAGCCAGGG 21 16179
HBB-178 - GCAGGGAGGGCAGGAGCCAGGG 22 16180
HBB-179 - AGCAGGGAGGGCAGGAGCCAGGG 23 16181
HBB-180 - GAGCAGGGAGGGCAGGAGCCAGGG 24 16182
HBB-181 - UGGGCAUAAAAGUCAGGG 18 16183
HBB-182 - CUGGGCAUAAAAGUCAGGG 19 16184
HBB-183 - GCUGGGCAUAAAAGUCAGGG 20 16185
HBB-184 - GGCUGGGCAUAAAAGUCAGGG 21 16186 HBB-185 - GGGCUGGGCAUAAAAGUCAGGG 22 16187
HBB-186 - AGGGCUGGGCAUAAAAGUCAGGG 23 16188
HBB-187 - CAGGGCUGGGCAUAAAAGUCAGGG 24 16189
HBB-188 - GGGGCAAGGUGAACGUGG 18 16190
HBB-189 - UGGGGCAAGGUGAACGUGG 19 16191
HBB-67 - GUGGGGCAAGGUGAACGUGG 20 16192
HBB-190 - UGUGGGGCAAGGUGAACGUGG 21 16193
HBB-191 - CUGUGGGGCAAGGUGAACGUGG 22 16194
HBB-192 - CCUGUGGGGCAAGGUGAACGUGG 23 16195
HBB-193 - CCCUGUGGGGCAAGGUGAACGUGG 24 16196
HBB-194 - UCUGCCGUUACUGCCCUG 18 16197
HBB-195 - GUCUGCCGUUACUGCCCUG 19 16198
HBB-27 - AGUCUGCCGUUACUGCCCUG 20 16199
HBB-196 - AAGUCUGCCGUUACUGCCCUG 21 16200
HBB-197 - GAAGUCUGCCGUUACUGCCCUG 22 16201
HBB-198 - AGAAGUCUGCCGUUACUGCCCUG 23 16202
HBB-199 - GAGAAGUCUGCCGUUACUGCCCUG 24 16203
HBB-200 - UGGUGCACCUGACUCCUG 18 16204
HBB-201 - AUGGUGCACCUGACUCCUG 19 16205
HBB-6 - CAUGGUGCACCUGACUCCUG 20 16206
HBB-202 - CCAUGGUGCACCUGACUCCUG 21 16207
HBB-203 - ACCAUGGUGCACCUGACUCCUG 22 16208
HBB-204 - CACCAUGGUGCACCUGACUCCUG 23 16209
HBB-205 - ACACCAUGGUGCACCUGACUCCUG 24 16210
HBB-206 - ACGUGGAUGAAGUUGGUG 18 16211
HBB-207 - AACGUGGAUGAAGUUGGUG 19 16212
HBB-64 - GAACGUGGAUGAAGUUGGUG 20 16213
HBB-208 - UGAACGUGGAUGAAGUUGGUG 21 16214
HBB-209 - GUGAACGUGGAUGAAGUUGGUG 22 16215
HBB-210 - GGUGAACGUGGAUGAAGUUGGUG 23 16216
HBB-211 - AGGUGAACGUGGAUGAAGUUGGUG 24 16217
HBB-212 - GUGCACCUGACUCCUGUG 18 16218
HBB-213 - GGUGCACCUGACUCCUGUG 19 16219
HBB-63 - UGGUGCACCUGACUCCUGUG 20 16220
HBB-214 - AUGGUGCACCUGACUCCUGUG 21 16221
HBB-215 - CAUGGUGCACCUGACUCCUGUG 22 16222
HBB-216 - CCAUGGUGCACCUGACUCCUGUG 23 16223
HBB-217 - ACCAUGGUGCACCUGACUCCUGUG 24 16224
HBB-218 - GUCUGCCGUUACUGCCCU 18 16225
HBB-219 - AGUCUGCCGUUACUGCCCU 19 16226
HBB-56 - AAGUCUGCCGUUACUGCCCU 20 16227
HBB-220 - GAAGUCUGCCGUUACUGCCCU 21 16228 HBB-221 - AGAAGUCUGCCGUUACUGCCCU 22 16229
HBB-222 - GAGAAGUCUGCCGUUACUGCCCU 23 16230
HBB-223 - GGAGAAGUCUGCCGUUACUGCCCU 24 16231
HBB-224 - AUGGUGCACCUGACUCCU 18 16232
HBB-225 - CAUGGUGCACCUGACUCCU 19 16233
HBB-60 - CCAUGGUGCACCUGACUCCU 20 16234
HBB-226 - ACCAUGGUGCACCUGACUCCU 21 16235
HBB-227 - CACCAUGGUGCACCUGACUCCU 22 16236
HBB-228 - ACACCAUGGUGCACCUGACUCCU 23 16237
HBB-229 - GACACCAUGGUGCACCUGACUCCU 24 16238
HBB-230 - AGGGCUGGGCAUAAAAGU 18 16239
HBB-231 - CAGGGCUGGGCAUAAAAGU 19 16240
HBB-232 - CCAGGGCUGGGCAUAAAAGU 20 16241
HBB-233 - GCCAGGGCUGGGCAUAAAAGU 21 16242
HBB-234 - AGCCAGGGCUGGGCAUAAAAGU 22 16243
HBB-235 - GAGCCAGGGCUGGGCAUAAAAGU 23 16244
HBB-236 - GGAGCCAGGGCUGGGCAUAAAAGU 24 16245
HBB-237 - AGG U U ACAAG ACAGG U U U 18 16246
HBB-238 - AAGG U U ACAAG ACAGG U U U 19 16247
HBB-239 - CAAGG U U ACAAG ACAGG U U U 20 16248
HBB-240 - U CAAGG U U ACAAG ACAGG U U U 21 16249
HBB-241 - A U CAAG G U U AC AAG AC AG G U U U 22 16250
HBB-242 - U A U CAAG G U U AC AAG AC AG G U U U 23 16251
HBB-243 - G U AU CAAGG U U ACAAG ACAGG U U U 24 16252
Table 26 provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and have a high level of orthogonality. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Table 26
Figure imgf000530_0001
H BB-247 - AAAGUCAGGGCAGAGCCAUC 20 16256
III. Cas9 Molecules
Cas9 molecules of a variety of species can be used in the methods and compositions described herein. While the S. pyogenes, S. aureus, and S. thermophilus Cas9 molecules are the subject of much of the disclosure herein, Cas9 molecules of, derived from, or based on the Cas9 proteins of other species listed herein can be used as well. In other words, while the much of the description herein uses S. pyogenes and S. thermophilus Cas9 molecules, Cas9 molecules from the other species can replace them, e.g., Staphylococcus aureus and Neisseria meningitidis Cas9 molecules. Additional Cas9 species include: Acidovorax avenae, Actinobacillus
pleuropneumoniae, Actinobacillus succinogenes, Actinobacillus suis, Actinomyces sp., cycliphilus denitrificans, Aminomonas paucivorans, Bacillus cereus, Bacillus smithii, Bacillus thuringiensis, Bacteroides sp., Blastopirellula marina, Bradyrhizobium sp., Brevibacillus laterosporus, Campylobacter coli, Campylobacter jejuni, Campylobacter lari, Candidatus Puniceispirillum, Clostridium cellulolyticum, Clostridium perfringens, Corynebacterium accolens, Corynebacterium diphtheria, Corynebacterium matruchotii, Dinoroseobacter shibae, Eubacterium dolichum, gamma proteobacterium, Gluconacetobacter diazotrophicus,
Haemophilus parainfluenzae, Haemophilus sputorum, Helicobacter canadensis, Helicobacter cinaedi, Helicobacter mustelae, Ilyobacter polytropus, Kingella kingae, Lactobacillus crispatus, Listeria ivanovii, Listeria monocytogenes, Listeriaceae bacterium, Methylocystis sp.,
Methylosinus trichosporium, Mobiluncus mulieris, Neisseria bacilliformis, Neisseria cinerea, Neisseria flavescens, Neisseria lactamica, Neisseria sp., Neisseria wadsworthii, Nitrosomonas sp., Parvibaculum lavamentivorans, Pasteur ella multocida, Phascolarctobacterium
succinatutens, Ralstonia syzygii, Rhodopseudomonas palustris, Rhodovulum sp., Simonsiella muelleri, Sphingomonas sp., Sporolactobacillus vineae, Staphylococcus lugdunensis,
Streptococcus sp., Subdoligranulum sp., Tistrella mobilis, Treponema sp., or Verminephrobacter eiseniae.
A Cas9 molecule, or Cas9 polypeptide, as that term is used herein, refers to a molecule or a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence. Cas9 molecule and Cas9 polypeptide, as those terms are used herein, refer to naturally occurring Cas9 molecules and to engineered, altered, or modified Cas9 molecules or Cas9 polypeptides that differ, e.g., by at least one amino acid residue, from a reference sequence, e.g., the most similar naturally occurring Cas9 molecule or a sequence of Table 28.
Cas9 Domains
Crystal structures have been determined for two different naturally occurring bacterial Cas9 molecules (Jinek et al., Science, 343(6176): 1247997, 2014) and for S. pyogenes Cas9 with a guide RNA (e.g., a synthetic fusion of crRNA and tracrRNA) (Nishimasu et al., Cell, 156:935- 949, 2014; and Anders et al., Nature, 2014, doi: 10.1038/naturel3579).
A naturally occurring Cas9 molecule comprises two lobes: a recognition (REC) lobe and a nuclease (NUC) lobe; each of which further comprise domains described herein. Figs. 9A-9B provide a schematic of the organization of important Cas9 domains in the primary structure. The domain nomenclature and the numbering of the amino acid residues encompassed by each domain used throughout this disclosure is as described in Nishimasu et al. The numbering of the amino acid residues is with reference to Cas9 from S. pyogenes.
The REC lobe comprises the arginine-rich bridge helix (BH), the RECl domain, and the REC2 domain. The REC lobe does not share structural similarity with other known proteins, indicating that it is a Cas9-specific functional domain. The BH domain is a long a helix and arginine rich region and comprises amino acids 60-93 of the sequence of S. pyogenes Cas9. The RECl domain is important for recognition of the repeat: anti-repeat duplex, e.g., of a gRNA or a tracrRNA, and is therefore critical for Cas9 activity by recognizing the target sequence. The RECl domain comprises two RECl motifs at amino acids 94 to 179 and 308 to 717 of the sequence of S. pyogenes Cas9. These two RECl domains, though separated by the REC2 domain in the linear primary structure, assemble in the tertiary structure to form the RECl domain. The REC2 domain, or parts thereof, may also play a role in the recognition of the repeat: anti-repeat duplex. The REC2 domain comprises amino acids 180-307 of the sequence of S. pyogenes Cas9.
The NUC lobe comprises the RuvC domain, the HNH domain, and the PAM-interacting (PI) domain. The RuvC domain shares structural similarity to retroviral integrase superfamily members and cleaves a single strand, e.g., the non-complementary strand of the target nucleic acid molecule. The RuvC domain is assembled from the three split RuvC motifs (RuvC I, RuvCII, and RuvCIII, which are often commonly referred to in the art as RuvCI domain, or N- terminal RuvC domain, RuvCII domain, and RuvCIII domain) at amino acids 1-59, 718-769, and 909-1098, respectively, of the sequence of S. pyogenes Cas9. Similar to the REC1 domain, the three RuvC motifs are linearly separated by other domains in the primary structure, however in the tertiary structure, the three RuvC motifs assemble and form the RuvC domain. The HNH domain shares structural similarity with HNH endonucleases, and cleaves a single strand, e.g., the complementary strand of the target nucleic acid molecule. The HNH domain lies between the RuvC II- III motifs and comprises amino acids 775-908 of the sequence of S. pyogenes Cas9. The PI domain interacts with the PAM of the target nucleic acid molecule, and comprises amino acids 1099-1368 of the sequence of S. pyogenes Cas9.
A RuvC-like domain and an HNH-like domain
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises an HNH-like domain and a RuvC-like domain. In an embodiment, cleavage activity is dependent on a RuvC-like domain and an HNH-like domain. A Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more of the following domains: a RuvC- like domain and an HNH-like domain. In an embodiment, a Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide and the eaCas9 molecule or eaCas9 polypeptide comprises a RuvC-like domain, e.g., a RuvC-like domain described below, and/or an HNH-like domain, e.g., an HNH-like domain described below.
RuvC-like domains
In an embodiment, a RuvC-like domain cleaves, a single strand, e.g., the non- complementary strand of the target nucleic acid molecule. The Cas9 molecule or Cas9 polypeptide can include more than one RuvC-like domain (e.g., one, two, three or more RuvC- like domains). In an embodiment, a RuvC-like domain is at least 5, 6, 7, 8 amino acids in length but not more than 20, 19, 18, 17, 16 or 15 amino acids in length. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises an N-terminal RuvC-like domain of about 10 to 20 amino acids, e.g., about 15 amino acids in length.
N-terminal RuvC-like domains Some naturally occurring Cas9 molecules comprise more than one RuvC-like domain with cleavage being dependent on the N-terminal RuvC-like domain. Accordingly, Cas9 molecules or Cas9 polypeptide can comprise an N-terminal RuvC-like domain. Exemplary N- terminal RuvC-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal
RuvC-like domain comprising an amino acid sequence of formula I:
D-X1-G-X2-X3-X4-X5-G-X6-X7-X8-X9 (SEQ ID NO: 8),
wherein,
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X4 is selected from S, Y, N and F (e.g., S);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W);
X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R, or, e.g., selected from T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:8, by as many as 1 but no more than 2, 3, 4, or 5 residues.
In embodiment, the N-terminal RuvC-like domain is cleavage competent.
In embodiment, the N-terminal RuvC-like domain is cleavage incompetent.
In an embodiment, a eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula II:
D-X1-G-X2-X3-S-X5-G-X6-X7-X8-X9, (SEQ ID NO: 9),
wherein
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W); X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID
NO:9 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-X2-X3-S-V-G-W-A-X8-X9 (SEQ ID NO: 10),
wherein
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 10 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-T-N-S-V-G-W-A-V-X (SEQ ID NO: 11),
wherein
X is a non-polar alkyl amino acid or a hydroxyl amino acid, e.g., X is selected from V, I, L and T (e.g., the eaCas9 molecule can comprise an N-terminal RuvC-like domain shown in Figs. 2A-2G (is depicted as Y)).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID
NO: 11 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC like domain disclosed herein, e.g., in Figs. 3A-3B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, 3 or all of the highly conserved residues identified in Figs. 3A-3B or Figs. 7A-7B are present. In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC-like domain disclosed herein, e.g., in Figs. 4A-4B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, or all of the highly conserved residues identified in Figs. 4A-4B or Figs. 7A-7B are present.
Additional RuvC-like domains
In addition to the N-terminal RuvC-like domain, the Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more additional RuvC-like domains. In an embodiment, the Cas9 molecule or Cas9 polypeptide can comprise two additional RuvC-like domains. Preferably, the additional RuvC-like domain is at least 5 amino acids in length and, e.g., less than 15 amino acids in length, e.g., 5 to 10 amino acids in length, e.g., 8 amino acids in length.
An additional RuvC-like domain can comprise an amino acid sequence:
I-X1-X2-E-X3-A-R-E (SEQ ID NO: 12), wherein
XI is V or H,
X2 is I, L or V (e.g., I or V); and
X3 is M or T.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence: I-V-X2-E-M-A-R-E (SEQ ID NO: 13), wherein
X2 is I, L or V (e.g., I or V) (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an additional RuvC-like domain shown in Fig. 2A-2G or Figs. 7A-7B (depicted as B)).
An additional RuvC-like domain can comprise an amino acid sequence:
H-H-A-X1-D-A-X2-X3 (SEQ ID NO: 14), wherein
XI is H or L;
X2 is R or V; and
X3 is E or V.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence: H-H-A-H-D-A-Y-L (SEQ ID NO: 15).
In an embodiment, the additional RuvC-like domain differs from a sequence of SEQ ID NO: 12, 13, 14 or 15 by as many as 1 but no more than 2, 3, 4, or 5 residues. In some embodiments, the sequence flanking the N-terminal RuvC-like domain is a sequences of formula V:
K-X1'-Y-X2'-X3'-X4'-Z-T-D-X9'-Y, (SEQ ID NO: 16).
wherein
Χ is selected from K and P,
X2' is selected from V, L, I, and F (e.g., V, I and L);
X3' is selected from G, A and S (e.g., G),
X4' is selected from L, I, V and F (e.g., L);
X9' is selected from D, E, N and Q; and
Z is an N-terminal RuvC-like domain, e.g., as described above.
HNH-like domains
In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. In an embodiment, an HNH-like domain is at least 15, 20, 25 amino acids in length but not more than 40, 35 or 30 amino acids in length, e.g., 20 to 35 amino acids in length, e.g., 25 to 30 amino acids in length. Exemplary HNH-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VI:
X 1 -X2-X3-H-X4-X5-P-X6-X7-X8-X9-X 10-X 11 -X 12-X 13-X 14-X 15-N-X 16-X 17-X 18- X19-X20-X21-X22-X23-N (SEQ ID NO: 17), wherein
XI is selected from D, E, Q and N (e.g., D and E);
X2 is selected from L, I, R, Q, V, M and K;
X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V);
X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X7 is selected from S, A, D, T and K (e.g., S and A);
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S; XI 1 is selected from D, S, N, R, L and T (e.g., D);
X12 is selected from D, N and S;
X13 is selected from S, A, T, G and R (e.g., S);
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X16 is selected from K, L, R, M, T and F (e.g., L, R and K);
X17 is selected from V, L, I, A and T;
X18 is selected from L, I, V and A (e.g., L and I);
X19 is selected from T, V, C, E, S and A (e.g., T and V);
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, a HNH-like domain differs from a sequence of SEQ ID NO: 17 by at least one but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the HNH-like domain is cleavage competent.
In an embodiment, the HNH-like domain is cleavage incompetent.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
X 1 -X2-X3-H-X4-X5-P-X6-S-X8-X9-X 10-D-D-S-X 14-X 15-N-K- V-L-X 19-X20-X21 -
X22-X23-N (SEQ ID NO: 18),
wherein
XI is selected from D and E;
X2 is selected from L, I, R, Q, V, M and K;
X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V);
X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S; X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X19 is selected from T, V, C, E, S and A (e.g., T and V);
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 18 by 1, 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
X 1 - V-X3-H-I- V-P-X6-S-X8-X9-X 10-D-D-S-X 14-X 15-N-K- V-L-T-X20-X21 -X22-X23- N (SEQ ID NO: 19),
wherein
XI is selected from D and E;
X3 is selected from D and E;
X6 is selected from Q, H, R, K, Y, I, L and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 19 by 1, 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VIII: D-X2-D-H-I-X5-P-Q-X7-F-X9-X 10-D-X 12-S-I-D-N-X 16- V-L-X 19-X20-S-X22-X23-N (SEQ ID NO:20),
wherein
X2 is selected from I and V;
X5 is selected from I and V;
X7 is selected from A and S;
X9 is selected from I and L;
X10 is selected from K and T;
X12 is selected from D and N;
X16 is selected from R, K and L; X19 is selected from T and V;
X20 is selected from S and R;
X22 is selected from K, D and A; and
X23 is selected from E, K, G and N (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an HNH-like domain as described herein).
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 20 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises the amino acid sequence of formula IX:
L- Y- Y-L-Q-N-G-X 1 ' -D-M- Y-X2' -X3 ' -X4' -X5 ' -L-D-I— X6' -X7 ' -L-S-X8 ' - Y-Z-N-R- X9'-K-X10'-D-X11'-V-P (SEQ ID NO: 21),
wherein
Χ is selected from K and R;
X2' is selected from V and T;
X3' is selected from G and D;
X4' is selected from E, Q and D;
X5' is selected from E and D;
X6' is selected from D, N and H;
X7' is selected from Y, R and N;
X8' is selected from Q, D and N; X9' is selected from G and E;
X10' is selected from S and G;
XI 1 ' is selected from D and N; and Z is an HNH-like domain, e.g., as described above.
In an embodiment, the eaCas9 molecule or eaCas9 polypeptide comprises an amino acid sequence that differs from a sequence of SEQ ID NO:21 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, the HNH-like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 5A-5C or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1 or both of the highly conserved residues identified in Figs. 5A- 5C or Figs. 7A-7B are present.
In an embodiment, the HNH -like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 6A-6B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, all 3 of the highly conserved residues identified in Figs. 6A-6B or Figs. 7A-7B are present.
Cas9 Activities
Nuclease and Helicase Activities
In an embodiment, the Cas9 molecule or Cas9 polypeptide is capable of cleaving a target nucleic acid molecule. Typically wild type Cas9 molecules cleave both strands of a target nucleic acid molecule. Cas9 molecules and Cas9 polypeptides can be engineered to alter nuclease cleavage (or other properties), e.g., to provide a Cas9 molecule or Cas9 peolypeptide which is a nickase, or which lacks the ability to cleave target nucleic acid. A Cas9 molecule or Cas9 polypeptide that is capable of cleaving a target nucleic acid molecule is referred to herein as an eaCas9 (an enzymatically active Cas9) molecule or eaCas9 polypeptide.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following enzymatic activities:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule;
a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity; and a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid.
In an embodiment, an enzymatically active or an eaCas9 molecule or eaCas9 polypeptide cleaves both DNA strands and results in a double stranded break. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide cleaves only one strand, e.g., the strand to which the gRNA hybridizes to, or the strand complementary to the strand the gRNA hybridizes with. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH domain and an inactive, or cleavage incompetent, RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, RuvC domain.
Some Cas9 molecules or Cas9 polypeptides have the ability to interact with a gRNA molecule, and in conjunction with the gRNA molecule localize to a core target domain, but are incapable of cleaving the target nucleic acid, or incapable of cleaving at efficient rates. Cas9 molecules having no, or no substantial, cleavage activity are referred to herein as an eiCas9 molecule or eiCas9 polypeptide. For example, an eiCas9 molecule or eiCas9 polypeptide can lack cleavage activity or have substantially less, e.g., less than 20, 10, 5, 1 or 0.1 % of the cleavage activity of a reference Cas9 molecule or eiCas9 polypeptide, as measured by an assay described herein. Targeting And PAMs
A Cas9 molecule or Cas9 polypeptide, is a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence.
In an embodiment, the ability of an eaCas9 molecule or eaCas9 polypeptide to interact with and cleave a target nucleic acid is PAM sequence dependent. A PAM sequence is a sequence in the target nucleic acid. In an embodiment, cleavage of the target nucleic acid occurs upstream from the PAM sequence. EaCas9 molecules from different bacterial species can recognize different sequence motifs (e.g., PAM sequences). In an embodiment, an eaCas9 molecule of S. pyogenes recognizes the sequence motif NGG and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Mali et al., SCIENCE 2013; 339(6121): 823-826. In an embodiment, an eaCas9 molecule of S. thermophilus recognizes the sequence motif NGGNG (SEQ ID NO.: 90) and/or NNAGAAW (W = A or T) (SEQ ID NO.: 91) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from these sequences. See, e.g., Horvath et al. , SCIENCE 2010;
327(5962): 167-170, and Deveau et al , J BACTERIOL 2008; 190(4): 1390- 1400. In an
embodiment, an eaCas9 molecule of S. mutans recognizes the sequence motif NGG and/or
NAAR (R = A or G) (SEQ ID NO.: 92) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5 base pairs, upstream from this sequence. See, e.g., Deveau et al , J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRR (R = A or G) (SEQ ID NO.: 93) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRN (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRT (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRV (R = A or G) (SEQ ID NO.: ) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of N. meningitidis recognizes the sequence motif NNNNGATT (SEQ ID NO.: 94) or NNNGCTT (R = A or G) (SEQ ID NO: 95) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Hou et al., PNAS 2013; 110(39): 15644- 15649. The ability of a Cas9 molecule to recognize a PAM sequence can be determined, e.g., using a transformation assay described in Jinek et al. , SCIENCE 2012, 337:816. In the aforementioned embodiments, N can be any nucleotide residue, e.g., any of A, G, C or T.
As is discussed herein, Cas9 molecules can be engineered to alter the PAM specificity of the Cas9 molecule. Exemplary naturally occurring Cas9 molecules are described in Chylinski et ah, RNA BIOLOGY 2013 10:5, 727-737. Such Cas9 molecules include Cas9 molecules of a cluster 1 bacterial family, cluster 2 bacterial family, cluster 3 bacterial family, cluster 4 bacterial family, cluster 5 bacterial family, cluster 6 bacterial family, a cluster 7 bacterial family, a cluster 8 bacterial family, a cluster 9 bacterial family, a cluster 10 bacterial family, a cluster 11 bacterial family, a cluster 12 bacterial family, a cluster 13 bacterial family, a cluster 14 bacterial family, a cluster 15 bacterial family, a cluster 16 bacterial family, a cluster 17 bacterial family, a cluster 18 bacterial family, a cluster 19 bacterial family, a cluster 20 bacterial family, a cluster 21 bacterial family, a cluster 22 bacterial family, a cluster 23 bacterial family, a cluster 24 bacterial family, a cluster 25 bacterial family, a cluster 26 bacterial family, a cluster 27 bacterial family, a cluster 28 bacterial family, a cluster 29 bacterial family, a cluster 30 bacterial family, a cluster 31 bacterial family, a cluster 32 bacterial family, a cluster 33 bacterial family, a cluster 34 bacterial family, a cluster 35 bacterial family, a cluster 36 bacterial family, a cluster 37 bacterial family, a cluster 38 bacterial family, a cluster 39 bacterial family, a cluster 40 bacterial family, a cluster 41 bacterial family, a cluster 42 bacterial family, a cluster 43 bacterial family, a cluster 44 bacterial family, a cluster 45 bacterial family, a cluster 46 bacterial family, a cluster 47 bacterial family, a cluster 48 bacterial family, a cluster 49 bacterial family, a cluster 50 bacterial family, a cluster 51 bacterial family, a cluster 52 bacterial family, a cluster 53 bacterial family, a cluster 54 bacterial family, a cluster 55 bacterial family, a cluster 56 bacterial family, a cluster 57 bacterial family, a cluster 58 bacterial family, a cluster 59 bacterial family, a cluster 60 bacterial family, a cluster 61 bacterial family, a cluster 62 bacterial family, a cluster 63 bacterial family, a cluster 64 bacterial family, a cluster 65 bacterial family, a cluster 66 bacterial family, a cluster 67 bacterial family, a cluster 68 bacterial family, a cluster 69 bacterial family, a cluster 70 bacterial family, a cluster 71 bacterial family, a cluster 72 bacterial family, a cluster 73 bacterial family, a cluster 74 bacterial family, a cluster 75 bacterial family, a cluster 76 bacterial family, a cluster 77 bacterial family, or a cluster 78 bacterial family.
Exemplary naturally occurring Cas9 molecules include a Cas9 molecule of a cluster 1 bacterial family. Examples include a Cas9 molecule of: S. pyogenes (e.g., strain SF370, MGAS10270, MGAS10750, MGAS2096, MGAS315, MGAS5005, MGAS6180, MGAS9429, NZ131 and SSI-1), S. thermophilus (e.g., strain LMD-9), S. pseudoporcinus (e.g., strain SPIN 20026), S. mutans (e.g., strain UA159, NN2025), S. macacae (e.g., strain NCTC11558), S.
gallolyticus (e.g., strain UCN34, ATCC BAA-2069), S. equines (e.g., strain ATCC 9812, MGCS 124), S. dysdalactiae (e.g., strain GGS 124), S. bovis (e.g., strain ATCC 700338), S. anginosus (e.g., strain F0211), S. agalactiae (e.g., strain NEM316, A909), Listeria monocytogenes (e.g., strain F6854), Listeria innocua (L. innocua, e.g., strain Clipl l262), Enterococcus italicus (e.g., strain DSM 15952), or Enterococcus faecium (e.g., strain 1,231,408). Additional exemplary Cas9 molecules are a Cas9 molecule of Neisseria meningitidis (Hou et al., PNAS Early Edition 2013, 1-6 and a S. aureus cas9 molecule.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence:
having 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with;
differs at no more than, 2, 5, 10, 15, 20, 30, or 40% of the amino acid residues when compared with;
differs by at least 1, 2, 5, 10 or 20 amino acids, but by no more than 100, 80, 70, 60, 50,
40 or 30 amino acids from; or
is identical to any Cas9 molecule sequence described herein, or a naturally occurring Cas9 molecule sequence, e.g., a Cas9 molecule from a species listed herein or described in Chylinski et al., RNA BIOLOGY 2013 10:5, 727-737; Hou et al., PNAS Early Edition 2013, 1-6; SEQ ID NO: 1-4. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises one or more of the following activities: a nickase activity; a double stranded cleavage activity (e.g., an endonuclease and/or exonuclease activity); a helicase activity; or the ability, together with a gRNA molecule, to localize to a target nucleic acid.
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises any of the amino acid sequence of the consensus sequence of Figs. 2A-2G, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, S. thermophilus, S. mutans and L. innocua, and "-" indicates any amino acid. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of the consensus sequence disclosed in Figs. 2A-2G by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues. In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises the amino acid sequence of SEQ ID NO:7 of Figs. 7A-7B, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, or N. meningitidis, "-" indicates any amino acid, and "-" indicates any amino acid or absent. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of SEQ ID NO:6 or 7 disclosed in Figs. 7A-7B by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues.
A comparison of the sequence of a number of Cas9 molecules indicate that certain regions are conserved. These are identified below as:
region 1 ( residuesl to 180, or in the case of region l'residues 120 to 180)
region 2 ( residues360 to 480);
region 3 ( residues 660 to 720);
region 4 ( residues 817 to 900); and
region 5 ( residues 900 to 960);
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises regions 1-5, together with sufficient additional Cas9 molecule sequence to provide a biologically active molecule, e.g., a Cas9 molecule having at least one activity described herein. In an embodiment, each of regions 1-5, independently, have 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with the corresponding residues of a Cas9 molecule or Cas9 polypeptide described herein, e.g., a sequence from Figs. 2A-2G or from Figs. 7A-7B.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1 :
having 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 1-180 (the numbering is according to the motif sequence in Fig. 2; 52% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes;
differs by at least 1, 2, 5, 10 or 20 amino acids but by no more than 90, 80, 70, 60, 50, 40 or 30 amino acids from amino acids 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or Listeria innocua; or
is identical to 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1 ' : having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 120-180 (55% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua ; or
is identical to 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 2:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 360-480 (52% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 3:
having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 660-720 (56% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua. In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 4:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 817-900 (55% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 5:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 900-960 (60% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
Engineered Or Altered Cas9 Molecules And Cas9 Polypeptides
Cas9 molecules and Cas9 polypeptides described herein, e.g., naturally occurring Cas9 molecules, can possess any of a number of properties, including: nuclease activity (e.g., endonuclease and/or exonuclease activity); helicase activity; the ability to associate functionally with a gRNA molecule; and the ability to target (or localize to) a site on a nucleic acid (e.g., PAM recognition and specificity). In an embodiment, a Cas9 molecule or Cas9 polypeptide can include all or a subset of these properties. In a typical embodiment, a Cas9 molecule or Cas9 polypeptide has the ability to interact with a gRNA molecule and, in concert with the gRNA molecule, localize to a site in a nucleic acid. Other activities, e.g., PAM specificity, cleavage activity, or helicase activity can vary more widely in Cas9 molecules and Cas9 polypeptides.
Cas9 molecules include engineered Cas9 molecules and engineered Cas9 polypeptides (engineered, as used in this context, means merely that the Cas9 molecule or Cas9 polypeptide differs from a reference sequences, and implies no process or origin limitation). An engineered Cas9 molecule or Cas9 polypeptide can comprise altered enzymatic properties, e.g., altered nuclease activity, (as compared with a naturally occurring or other reference Cas9 molecule) or altered helicase activity. As discussed herein, an engineered Cas9 molecule or Cas9 polypeptide can have nickase activity (as opposed to double strand nuclease activity). In an embodiment an engineered Cas9 molecule or Cas9 polypeptide can have an alteration that alters its size, e.g., a deletion of amino acid sequence that reduces its size, e.g., without significant effect on one or more, or any Cas9 activity. In an embodiment, an engineered Cas9 molecule or Cas9 polypeptide can comprise an alteration that affects PAM recognition. E.g., an engineered Cas9 molecule can be altered to recognize a PAM sequence other than that recognized by the endogenous wild-type PI domain. In an embodiment a Cas9 molecule or Cas9 polypeptide can differ in sequence from a naturally occurring Cas9 molecule but not have significant alteration in one or more Cas9 activities.
Cas9 molecules or Cas9 polypeptides with desired properties can be made in a number of ways, e.g., by alteration of a parental, e.g., naturally occurring, Cas9 molecules or Cas9 polypeptides, to provide an altered Cas9 molecule or Cas9 polypeptide having a desired property. For example, one or more mutations or differences relative to a parental Cas9 molecule, e.g., a naturally occurring or engineered Cas9 molecule, can be introduced. Such mutations and differences comprise: substitutions (e.g., conservative substitutions or
substitutions of non-essential amino acids); insertions; or deletions. In an embodiment, a Cas9 molecule or Cas9 polypeptide can comprises one or more mutations or differences, e.g., at least 1, 2, 3, 4, 5, 10, 15, 20, 30, 40 or 50 mutations but less than 200, 100, or 80 mutations relative to a reference, e.g., a parental, Cas9 molecule.
In an embodiment, a mutation or mutations do not have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. In an embodiment, a mutation or mutations have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. Non-Cleaving and Modified-Cleavage Cas9 Molecules and Cas9 Polypeptides In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule or Cas9 polypeptide can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S. pyogenes, as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded nucleic acid (endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complementary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity) , e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
Modified Cleavage eaCas9 Molecules and eaCas9 Polypeptides
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following activities: cleavage activity associated with an N-terminal RuvC-like domain; cleavage activity associated with an HNH-like domain; cleavage activity associated with an HNH-like domain and cleavage activity associated with an N-terminal RuvC-like domain.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH-like domain (e.g., an HNH-like domain described herein, e.g., SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 or SEQ ID NO: 21) and an inactive, or cleavage incompetent, N-terminal RuvC-like domain. An exemplary inactive, or cleavage incompetent N-terminal RuvC-like domain can have a mutation of an aspartic acid in an N-terminal RuvC-like domain, e.g., an aspartic acid at position 9 of the consensus sequence disclosed in Figs. 2A-2G or an aspartic acid at position 10 of SEQ ID NO: 7, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 molecule or eaCas9 polypeptide differs from wild type in the N-terminal RuvC-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or .1 % of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus . In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, N-terminal RuvC-like domain (e.g., a RuvC-like domain described herein, e.g., SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, or SEQ ID NO: 16). Exemplary inactive, or cleavage incompetent HNH-like domains can have a mutation at one or more of: a histidine in an HNH-like domain, e.g., a histidine shown at position 856 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine; and one or more asparagines in an HNH-like domain, e.g., an asparagine shown at position 870 of the consensus sequence disclosed in Figs. 2A-2G and/or at position 879 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 differs from wild type in the HNH-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
Alterations in the Ability to Cleave One or Both Strands of a Target Nucleic Acid
In an embodiment, exemplary Cas9 activities comprise one or more of PAM specificity, cleavage activity, and helicase activity. A mutation(s) can be present, e.g., in: one or more RuvC domains, e.g., an N-terminal RuvC domain; an HNH domain; a region outside the RuvC domains and the HNH domain. In an embodiment, a mutation(s) is present in a RuvC domain. In an embodiment, a mutation(s) is present in an HNH domain. In an embodiment, mutations are present in both a RuvC domain and an HNH domain. Exemplary mutations that may be made in the RuvC domain or HNH domain with reference to the S. pyogenes sequence include: D10A, E762A, H840A, N854A, N863A and/or D986A.
In an embodiment, a Cas9 molecule is an eiCas9 molecule comprising one or more differences in a RuvC domain and/or in an HNH domain as compared to a reference Cas9 molecule, and the eiCas9 molecule does not cleave a nucleic acid, or cleaves with significantly less efficiency than does wildype, e.g., when compared with wild type in a cleavage assay, e.g., as described herein, cuts with less than 50, 25, 10, or 1% of a reference Cas9 molecule, as measured by an assay described herein.
Whether or not a particular sequence, e.g., a substitution, may affect one or more activity, such as targeting activity, cleavage activity, etc, can be evaluated or predicted, e.g., by evaluating whether the mutation is conservative. In an embodiment, a "non-essential" amino acid residue, as used in the context of a Cas9 molecule, is a residue that can be altered from the wild-type sequence of a Cas9 molecule, e.g., a naturally occurring Cas9 molecule, e.g., an eaCas9 molecule, without abolishing or more preferably, without substantially altering a Cas9 activity (e.g., cleavage activity), whereas changing an "essential" amino acid residue results in a substantial loss of activity (e.g., cleavage activity).
In an embodiment, a Cas9 molecule comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded break
(endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non- complimentary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
In an embodiment, the altered Cas9 molecule is an eaCas9 molecule comprising one or more of the following activities: cleavage activity associated with a RuvC domain; cleavage activity associated with an HNH domain; cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain.
In an embodiment, the altered Cas9 molecule is an eiCas9 molecule which does not cleave a nucleic acid molecule (either double stranded or single stranded nucleic acid molecules) or cleaves a nucleic acid molecule with significantly less efficiency, e.g., less than 20, 10, 5, 1 or
0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can be a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. thermophilus, S. aureus, C. jejuni or N. meningitidis. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology. In an embodiment, the eiCas9 molecule lacks substantial cleavage activity associated with a RuvC domain and cleavage activity associated with an HNH domain.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. pyogenes shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. pyogenes (e.g., has a substitution) at one or more residue (e.g., 2,
3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G or SEQ ID NO: 7.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule. In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. thermophilus shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. thermophilus (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G. In an embodiment
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. mutans shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. mutans (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G; the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of L. innocula shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of L. innocula (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-"in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in
Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the
"*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an
L. innocula Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can be a fusion, e.g., of two of more different Cas9 molecules, e.g., of two or more naturally occurring Cas9 molecules of different species. For example, a fragment of a naturally occurring Cas9 molecule of one species can be fused to a fragment of a Cas9 molecule of a second species. As an example, a fragment of a Cas9 molecule of S.
pyogenes comprising an N-terminal RuvC-like domain can be fused to a fragment of Cas9 molecule of a species other than S. pyogenes (e.g., S. thermophilus) comprising an HNH-like domain.
Cas9 Molecules and Cas9 Polypeptides with Altered PAM Recognition or No PAM Recognition
Naturally occurring Cas9 molecules can recognize specific PAM sequences, for example the PAM recognition sequences described above for, e.g., S. pyogenes, S. thermophilus, S.
mutans, S. aureus and N. meningitidis.
In an embodiment, a Cas9 molecule or Cas9 polypeptide has the same PAM specificities as a naturally occurring Cas9 molecule. In an embodiment, a Cas9 molecule or Cas9
polypeptide has a PAM specificity not associated with a naturally occurring Cas9 molecule, or a PAM specificity not associated with the naturally occurring Cas9 molecule to which it has the closest sequence homology. For example, a naturally occurring Cas9 molecule can be altered, e.g., to alter PAM recognition, e.g., to alter the PAM sequence that the Cas9 molecule or Cas9 polypeptide recognizes to decrease off target sites and/or improve specificity; or eliminate a PAM recognition requirement. In an embodiment, a Cas9 molecule or Cas9 polypeptide can be altered, e.g., to increase length of PAM recognition sequence and/or improve Cas9 specificity to high level of identity (e.g., 98%, 99% or 100% match between gRNA and a PAM sequence), e.g., to decrease off target sites and increase specificity. In an embodiment, the length of the PAM recognition sequence is at least 4, 5, 6, 7, 8, 9, 10 or 15 amino acids in length. In an embodiment, the Cas9 specificity requires at least 90%, 95%, 96%, 97%, 98%, 99% or more homology between the gRNA and the PAM sequence. Cas9 molecules or Cas9 polypeptides that recognize different PAM sequences and/or have reduced off-target activity can be generated using directed evolution. Exemplary methods and systems that can be used for directed evolution of Cas9 molecules are described, e.g., in Esvelt et al. Nature 2011, 472(7344): 499- 503. Candidate Cas9 molecules can be evaluated, e.g., by methods described in Section IV.
Alterations of the PI domain, which mediates PAM recognition are discussed below. Synthetic Cas9 Molecules and Cas9 Polypeptides with Altered PI Domains Current genome-editing methods are limited in the diversity of target sequences that can be targeted by the PAM sequence that is recognized by the Cas9 molecule utilized. A synthetic Cas9 molecule (or Syn-Cas9 molecule), or synthetic Cas9 polypeptide (or syn-Cas9
polypeptide), as that term is used herein, refers to a Cas9 molecule or Cas9 polypeptide that comprises a Cas9 core domain from one bacterial species and a functional altered PI domain, i.e., a PI domain other than that naturally associated with the Cas9 core domain, e.g., from a different bacterial species.
In an embodiment, the altered PI domain recognizes a PAM sequence that is different from the PAM sequence recognized by the naturally- occurring Cas9 from which the Cas9 core domain is derived. In an embodiment, the altered PI domain recognizes the same PAM sequence recognized by the naturally- occurring Cas9 from which the Cas9 core domain is derived, but with different affinity or specificity. A Syn-Cas9 molecule or Syn-Cas9 polypetide can be, respectively, a Syn-eaCas9 molecule or Syn-eaCas9 polypeptide or a Syn-eiCas9 molecule Syn- eiCas9 polypeptide.
An exemplary Syn-Cas9 molecule Syn-Cas9 polypetide comprises:
a) a Cas9 core domain, e.g., a Cas9 core domain from Table 28 or 29, e.g., a S. aureus, S. pyogenes, or C. jejuni Cas9 core domain; and
b) an altered PI domain from a species X Cas9 sequence selected from Tables 31 and 32. In an embodiment, the RKR motif (the PAM binding motif) of said altered PI domain comprises: differences at 1, 2, or 3 amino acid residues; a difference in amino acid sequence at the first, second, or third position; differences in amino acid sequence at the first and second positions, the first and third positions, or the second and third positions; as compared with the sequence of the RKR motif of the native or endogenous PI domain associated with the Cas9 core domain.
In an embodiment, the Cas9 core domain comprises the Cas9 core domain from a species X Cas9 from Table 28 and said altered PI domain comprises a PI domain from a species Y Cas9 from Table 28.
In an embodiment, the RKR motif of the species X Cas9 is other than the RKR motif of the species Y Cas9. In an embodiment, the RKR motif of the altered PI domain is selected from XXY, XNG, and XNQ.
In an embodiment, the altered PI domain has at least 60, 70, 80, 90, 95, or 100% homology with the amino acid sequence of a naturally occurring PI domain of said species Y from Table 28.
In an embodiment, the altered PI domain differs by no more than 50, 40, 30, 25, 20, 15, 10, 5, 4, 3, 2, or 1 amino acid residue from the amino acid sequence of a naturally occurring PI domain of said second species from Table 28.
In an embodiment, the Cas9 core domain comprises a S. aureus core domain and altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from
Table 32.
In an embodiment, the Cas9 core domain comprises a S. pyogenes core domain and the altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 32.
In an embodiment, the Cas9 core domain comprises a C. jejuni core domain and the altered PI domain comprises: an A. denitrificans PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 32.
In an embodiment, the Cas9 molecule further comprises a linker disposed between said
Cas9 core domain and said altered PI domain.
In an embodiment, the linker comprises: a linker described elsewhere herein disposed between the Cas9 core domain and the heterologous PI domain. Suitable linkers are further described in Section V.
Exemplary altered PI domains for use in Syn-Cas9 molecules are described in Tables 31 and 32. The sequences for the 83 Cas9 orthologs referenced in Tables 31 and 32 are provided in Table 28. Table 30 provides the Cas9 orthologs with known PAM sequences and the corresponding RKR motif.
In an embodiment, a Syn-Cas9 molecule may also be size- optimized, e.g., the Syn-Cas9 molecule comprises one or more deletions, and optionally one or more linkers disposed between the amino acid residues flanking the deletions. In an embodiment, a Syn-Cas9 molecule comprises a REC deletion.
Size-Optimized Cas9 Molecules
Engineered Cas9 molecules and engineered Cas9 polypeptides described herein include a
Cas9 molecule or Cas9 polypeptide comprising a deletion that reduces the size of the molecule while still retaining desired Cas9 properties, e.g., essentially native conformation, Cas9 nuclease activity, and/or target nucleic acid molecule recognition. Provided herein are Cas9 molecules or Cas9 polypeptides comprising one or more deletions and optionally one or more linkers, wherein a linker is disposed between the amino acid residues that flank the deletion. Methods for identifying suitable deletions in a reference Cas9 molecule, methods for generating Cas9 molecules with a deletion and a linker, and methods for using such Cas9 molecules will be apparent to one of ordinary skill in the art upon review of this document.
A Cas9 molecule, e.g., a S. aureus, S. pyogenes, or C. jejuni, Cas9 molecule, having a deletion is smaller, e.g., has reduced number of amino acids, than the corresponding naturally- occurring Cas9 molecule. The smaller size of the Cas9 molecules allows increased flexibility for delivery methods, and thereby increases utility for genome-editing. A Cas9 molecule can comprise one or more deletions that do not substantially affect or decrease the activity of the resultant Cas9 molecules described herein. Activities that are retained in the Cas9 molecules comprising a deletion as described herein include one or more of the following:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule; a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity;
a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid;
and recognition activity of a nucleic acid molecule, e.g., a target nucleic acid or a gRNA. Activity of the Cas9 molecules described herein can be assessed using the activity assays described herein or in the art. Identifying regions suitable for deletion
Suitable regions of Cas9 molecules for deletion can be identified by a variety of methods. Naturally- occurring orthologous Cas9 molecules from various bacterial species, e.g., any one of those listed in Table 28, can be modeled onto the crystal structure of S. pyogenes Cas9
(Nishimasu et al., Cell, 156:935-949, 2014) to examine the level of conservation across the selected Cas9 orthologs with respect to the three-dimensional conformation of the protein. Less conserved or unconserved regions that are spatially located distant from regions involved in Cas9 activity, e.g., interface with the target nucleic acid molecule and/or gRNA, represent regions or domains are candidates for deletion without substantially affecting or decreasing Cas9 activity.
REC-Optimized Cas9 Molecules
A REC-optimized Cas9 molecule, as that term is used herein, refers to a Cas9 molecule that comprises a deletion in one or both of the REC2 domain and the REICT domain (collectively a REC deletion), wherein the deletion comprises at least 10% of the amino acid residues in the cognate domain. A REC-optimized Cas9 molecule can be an eaCas9 molecule or an eiCas9 molecule. An exemplary REC-optimizedCas9 molecule comprises:
a) a deletion selected from:
i) a REC2 deletion;
ii) a REC ICT deletion; or
iii) a REC 1 SUB deletion.
Optionally, a linker is disposed between the amino acid residues that flank the deletion. In an embodiment a Cas9 molecule includes only one deletion, or only two deletions. A Cas9 molecule can comprise a REC2 deletion and a REC ICT deletion. A Cas9 molecule can comprise a REC2 deletion and a REC 1 SUB deletion.
Generally, the deletion will contain at least 10% of the amino acids in the cognate domain, e.g., a REC2 deletion will include at least 10% of the amino acids in the REC2 domain.
A deletion can comprise: at least 10, 20, 30, 40, 50, 60, 70, 80, or 90% of the amino acid residues of its cognate domain; all of the amino acid residues of its cognate domain; an amino acid residue outside its cognate domain; a plurality of amino acid residues outside its cognate domain; the amino acid residue immediately N terminal to its cognate domain; the amino acid residue immediately C terminal to its cognate domain; the amino acid residue immediately N terminal to its cognate and the amino acid residue immediately C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to to its cognate domain and a plurality of e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain.
In an embodiment, a deletion does not extend beyond: its cognate domain; the N terminal amino acid residue of its cognate domain; the C terminal amino acid residue of its cognate domain.
A REC-optimized Cas9 molecule can include a linker disposed between the amino acid residues that flank the deletion. Suitable linkers for use between the amino acid resides that flank a REC deletion in a REC-optimized Cas9 molecule is disclosed in Section V.
In an embodiment a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, has at least 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99, or 100% homology with the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, differs by no more than 1, 2, 3, 4, 5, 6, 7,
8, 9, 10, 15, 20, or 25, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associate linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8,
9, 10, 15, 20, or 25% of the, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters. Methods of alignment of sequences for comparison are well known in the art. Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith and Waterman, (1970) Adv. Appl. Math. 2:482c, by the homology alignment algorithm of Needleman and Wunsch, (1970) J. Mol. Biol. 48:443, by the search for similarity method of Pearson and Lipman, (1988) Proc. Nat'l. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, WI), or by manual alignment and visual inspection (see, e.g., Brent et al., (2003) Current Protocols in Molecular Biology).
Two examples of algorithms that are suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2.0 algorithms, which are described in Altschul et al., (1977) Nuc. Acids Res. 25:3389-3402; and Altschul et al., (1990) J. Mol. Biol. 215:403-410, respectively. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information.
The percent identity between two amino acid sequences can also be determined using the algorithm of E. Meyers and W. Miller, (1988) Comput. Appl. Biosci. 4: 11-17) which has been incorporated into the ALIGN program (version 2.0), using a PAM120 weight residue table, a gap length penalty of 12 and a gap penalty of 4. In addition, the percent identity between two amino acid sequences can be determined using the Needleman and Wunsch (1970) J. Mol. Biol.
48:444-453) algorithm which has been incorporated into the GAP program in the GCG software package (available at www.gcg.com), using either a Blossom 62 matrix or a PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length weight of 1, 2, 3, 4, 5, or 6.
Sequence information for exemplary REC deletions are provided for 83 naturally- occurring Cas9 orthologs in Table 28. The amino acid sequences of exemplary Cas9 molecules from different bacterial species are shown below.
Table 28. Amino Acid Sequence of Cas9 Orthologs
Figure imgf000563_0001
BAA- 1640 318
gil304438954lreflZP_07398877.1
Acidaminococcus sp. D21 SEQ ID NO: 167 306 140 511 591 75 511 591 75 gil227824983lreflZP_03989815.1 319
Lactobacillus farciminis KCTC SEQ ID NO: 171 310 140 542 621 85 542 621 85
3681 320
gil336394882lreflZP_08576281.1
Streptococcus sanguinis SK49 SEQ ID NO: 185 324 140 411 490 85 411 490 85 gil422884106lreflZP_l 6930555.1 321
Coprococcus catus GD-7 SEQ ID NO: 172 310 139 556 634 76 556 634 76 gil291520705lemblCBK78998.1 l 322
Streptococcus mutans UA159 SEQ ID NO: 176 314 139 392 470 84 392 470 84 gil24379809lreflNP_721764.11 323
Streptococcus pyogenes Ml SEQ ID NO: 176 314 139 523 600 82 523 600 82
GAS 324
gill3622193lgblAAK33936.1 l
Streptococcus thermophilus SEQ ID NO: 176 314 139 481 558 81 481 558 81 LMD-9 325
gil 1 16628213 Iref 1 YP_820832.11
Fusobacteriumnucleatum SEQ ID NO: 171 308 138 537 614 76 537 614 76 ATCC49256 326
gil34762592lreflZP_00143587.1 l
Planococcus antarcticus DSM SEQ ID NO: 162 299 138 538 614 94 538 614 94
14505 327
gil389815359lreflZP_10206685.1
Treponema denticola ATCC SEQ ID NO: 169 305 137 524 600 81 524 600 81
35405 328
gil42525843lreflNP_970941.11
Solobacterium moorei F0204 SEQ ID NO: 179 314 136 544 619 77 544 619 77 gil320528778lreflZP_08029929.1 329
Staphylococcus SEQ ID NO: 164 299 136 531 606 92 531 606 92 pseudintermedius ED99 330
gil323463801 lgblADX75954.11
Flavobacterium branchiophilum SEQ ID NO: 162 286 125 538 613 63 538 613 63
FL-15 331
gil347536497lreflYP_004843922
.1
Ignavibacterium album JCM SEQ ID NO: 223 329 107 357 432 90 357 432 90
16511 332
gil38581 1609lreflYP_005848005
.1
Bergeyella zoohelcum ATCC SEQ ID NO: 165 261 97 529 604 56 529 604 56
43767 333
gi 1423317190lref IZP_ 17295095.1
Nitrobacter hamburgensis X14 SEQ ID NO: 169 253 85 536 611 48 536 611 48 gil92109262lrefl YP_571550.11 334
Odoribacter laneus YIT 12061 SEQ ID NO: 164 242 79 535 610 63 535 610 63 gil374384763lreflZP_09642280.1 335
Legionella pneumophila str. SEQ ID NO: 164 239 76 402 476 67 402 476 67
Paris 336
gil54296138lreflYP_122507.1 l Bacteroides sp. 20 3 SEQ ID NO: 198 269 72 530 604 83 530 604 83 gi 130131 1869 Iref IZP_07217791.1 337
Akkermansia muciniphila ATCC SEQ ID NO: 136 202 67 348 418 62 348 418 62
BAA-835 338
gill87736489lreflYP_001878601
Prevotella sp. C561 SEQ ID NO: 184 250 67 357 425 78 357 425 78 gil345885718lreflZP_08837074.1 339
Wolinella succinogenes DSM SEQ ID NO: 157 218 36 401 468 60 401 468 60
1740 340
gil34557932lreflNP_907747.11
Alicyclobacillus hesperidum SEQ ID NO: 142 196 55 416 482 61 416 482 61 URH17-3-68 341
gil403744858lreflZP_10953934.1
Caenispirillum salinarum AK4 SEQ ID NO: 161 214 54 330 393 68 330 393 68 gil427429481 lreflZP_l 891951 1.1 342
Eubacterium rectale ATCC SEQ ID NO: 133 185 53 322 384 60 322 384 60 33656 343
gil238924075lreflYP_002937591
.1
Mycoplasma synoviae 53 SEQ ID NO: 187 239 53 319 381 80 319 381 80 gil71894592lref 1 YP_278700.11 344
Porphyromonas sp. oral taxon SEQ ID NO: 150 202 53 309 371 60 309 371 60 279 str. F0450 345
gil402847315 Iref IZP_10895610.1
Streptococcus thermophilus SEQ ID NO: 127 178 139 424 486 81 424 486 81 LMD-9 346
gil 1 16627542lref 1 YP_820161.11
Roseburia inulinivorans DSM SEQ ID NO: 154 204 51 318 380 69 318 380 69
16841 347
gil225377804lreflZP_03755025.1
Methylosinus trichosporium SEQ ID NO: 144 193 50 426 488 64 426 488 64
OB3b 348
gil296446027lreflZP_06887976.1
Ruminococcus albus 8 SEQ ID NO: 139 187 49 351 412 55 351 412 55 gil325677756lreflZP_08157403.1 349
Bifidobacterium longum SEQ ID NO: 183 230 48 370 431 44 370 431 44 DJO10A 350
gill89440764lreflYP_001955845
Enterococcus faecalis TX0012 SEQ ID NO: 123 170 48 327 387 60 327 387 60 gil315149830lgblEFT93846.11 351
Mycoplasma mobile 163K SEQ ID NO: 179 226 48 314 374 79 314 374 79 gil47458868lreflYP_015730.1 l 352
Actinomyces coleocanis DSM SEQ ID NO: 147 193 47 358 418 40 358 418 40
15436 353
gil227494853lreflZP_03925169.1
Dinoroseobacter shibae DFL 12 SEQ ID NO: 138 184 47 338 398 48 338 398 48 gil 159042956lref 1 YP_001531750 354
.1 Actinomyces sp. oral taxon 180 SEQ ID NO: 183 228 46 349 409 40 349 409 40 str. F0310 355
gil315605738lreflZP_07880770.1
Alcanivorax sp. Wl 1-5 SEQ ID NO: 139 183 45 344 404 61 344 404 61 gil407803669lreflZP_l 1 150502.1 356
Aminomonas paucivorans DSM SEQ ID NO: 134 178 45 341 401 63 341 401 63
12260 357
gi 1312879015 Iref IZP_07738815.1
Mycoplasma canis PG 14 SEQ ID NO: 139 183 45 319 379 76 319 379 76 gil384393286lgblEIE39736.11 358
Lactobacillus coryniformis SEQ ID NO: 141 184 44 328 387 61 328 387 61 KCTC 3535 359
gil336393381 lreflZP_08574780.1
Elusimicrobium minutum Peil91 SEQ ID NO: 177 219 43 322 381 47 322 381 47 gill87250660lreflYP_001875142 360
.1
Neisseria meningitidis Z2491 SEQ ID NO: 147 189 43 360 419 61 360 419 61 gil218767588lreflYP_002342100 361
.1
Pasteurella multocida str. Pm70 SEQ ID NO: 139 181 43 319 378 61 319 378 61 gill5602992lreflNP_246064.11 362
Rhodovulum sp. PH10 SEQ ID NO: 141 183 43 319 378 48 319 378 48 gil402849997lreflZP_10898214.1 363
Eubacterium dolichum DSM SEQ ID NO: 131 172 42 303 361 59 303 361 59
3991 364
gill60915782lreflZP_02077990.1
Nitratifractor salsuginis DSM SEQ ID NO: 143 184 42 347 404 61 347 404 61
16511 365
gil319957206lreflYP_004168469
.1
Rhodospirillum rubrum ATCC SEQ ID NO: 139 180 42 314 371 55 314 371 55
1 1 170 366
gil83591793 Irefl YP_425545.11
Clostridium cellulolyticum H10 SEQ ID NO: 137 176 40 320 376 61 320 376 61 gil220930482lreflYP_002507391 367
.1
Helicobacter mustelae 12198 SEQ ID NO: 148 187 40 298 354 48 298 354 48 gi 1291276265 Iref 1 YP_003516037 368
.1
Ilyobacter polytropus DSM 2926 SEQ ID NO: 134 173 40 462 517 63 462 517 63 gil310780384lref 1 YP_003968716 369
.1
Sphaerochaeta globus str. Buddy SEQ ID NO: 163 202 40 335 389 45 335 389 45 gil325972003lreflYP_004248194 370
.1
Staphylococcus lugdunensis SEQ ID NO: 128 167 40 337 391 57 337 391 57 M23590 371
gil315659848lreflZP_07912707.1
Treponema sp. JC4 SEQ ID NO: 144 183 40 328 382 63 328 382 63 gil384109266lreflZP_10010146.1 372
uncultured delta proteobacterium SEQ ID NO: 154 193 40 313 365 55 313 365 55 HF0070 07E19 373 gi 1297182908 Igb 1 ADI 19058.11
Alicycliphilus denitrificans K601 SEQ ID NO: 140 178 39 317 366 48 317 366 48 gil330822845lreflYP_004386148 374
.1
Azospirillum sp. B510 SEQ ID NO: 205 243 39 342 389 46 342 389 46 gil288957741 lreflYP_003448082 375
.1
Bradyrhizobium sp. BTAil SEQ ID NO: 143 181 39 323 370 48 323 370 48 gill48255343lreflYP_001239928 376
.1
Parvibaculum lavamentivorans SEQ ID NO: 138 176 39 327 374 58 327 374 58
DS-1 377
gill54250555lreflYP_001411379
.1
Prevotella timonensis CRIS 5C- SEQ ID NO: 170 208 39 328 375 61 328 375 61
B l 378
gil282880052lreflZP_06288774.1
Bacillus smithii 7 3 47FAA SEQ ID NO: 134 171 38 401 448 63 401 448 63 gil365156657lreflZP_09352959.1 379
Cand. Puniceispirillum marinum SEQ ID NO: 135 172 38 344 391 53 344 391 53
IMCC1322 380
gil29408611 l lreflYP_003552871
.1
Barnesiella intestinihominis YIT SEQ ID NO: 140 176 37 371 417 60 371 417 60
11860 381
gi|404487228lreflZP_l 1022414.1
Ralstonia syzygii R24 SEQ ID NO: 140 176 37 395 440 50 395 440 50 gil344171927lemblCCA84553.1 l 382
Wolinella succinogenes DSM SEQ ID NO: 145 180 36 348 392 60 348 392 60
1740 383
gil34557790lreflNP_907605.11
Mycoplasma gallisepticum str. F SEQ ID NO: 144 177 34 373 416 71 373 416 71 gi 128493171 Olgb IADC31648.11 384
Acidothermus cellulolyticus 1 IB SEQ ID NO: 150 182 33 341 380 58 341 380 58 gill l7929158lreflYP_873709.1 l 385
Mycoplasma ovipneumoniae SEQ ID NO: 156 184 29 381 420 62 381 420 62
SCOl 386
gil363542550lreflZP_09312133.1
Table 29. Amino Acid Sequence of Cas9 Core Domains
Figure imgf000568_0001
Table 30. Identified PAM sequences and corresponding RKR motifs.
Figure imgf000568_0002
PI domains are provided in Tables 31 and 32.
Table 31. Altered PI Domains
Figure imgf000568_0003
Table 32. Other Altered PI Domains
Figure imgf000569_0001
Flavobacterium branchiophilum FL-15 1182 1473 292 KQK
Prevotella timonensis CRIS 5C-B1 957 1218 262 KQQ
Methylosinus trichosporium OB3b 830 1082 253 KRP
Prevotella sp. C561 1099 1424 326 KRY
Mycoplasma gallisepticum str. F 911 1269 359 KTA
Lactobacillus rhamnosus GG 1077 1363 287 KYG
Wolinella succinogenes DSM 1740 811 1059 249 LPN
Streptococcus thermophilus LMD-9 1099 1388 290 MLA
Treponema denticola ATCC 35405 1092 1395 304 NDS
Bergeyella zoohelcum ATCC 43767 1098 1415 318 NEK
Veillonella atypica ACS-134-V-Col7a 1107 1398 292 NGF
Neisseria meningitidis Z2491 835 1082 248 NHN
Ignavibacterium album JCM 16511 1296 1688 393 NKK
Ruminococcus albus 8 853 1156 304 NNF
Streptococcus thermophilus LMD-9 811 1121 311 N K
Barnesiella intestinihominis YIT 11860 871 1153 283 NPV
Azospirillum sp. B510 911 1168 258 PFH
Rhodospirillum rubrum ATCC 11170 863 1173 311 PRG
Planococcus antarcticus DSM 14505 1087 1333 247 PYY
Staphylococcus pseudintermedius ED99 1073 1334 262 QIV
Alcanivorax sp. Wl l-5 843 1113 271 RIE
Bradyrhizobium sp. BTAil 811 1064 254 RIY
Streptococcus pyogenes Ml GAS 1099 1368 270 RKR
Streptococcus mutans UA159 1078 1345 268 RKR
Streptococcus Pyogenes 1099 1368 270 RKR
Bacteroides sp. 20 3 1147 1517 371 RNI
S. aureus 772 1053 282 RNK
Solobacterium moorei F0204 1062 1327 266 RSG
Finegoldia magna ATCC 29328 1081 1348 268 RTE uncultured delta proteobacterium HF0070 07E19 770 1011 242 SGG
Acidaminococcus sp. D21 1064 1358 295 SIG
Eubacterium rectale ATCC 33656 824 1114 291 SKK
Caenispirillum salinarum AK4 1048 1442 395 SLV
Acidothermus cellulolyticus 11B 830 1138 309 SPS
Catenibacterium mitsuokai DSM 15897 1068 1329 262 SPT
Parvibaculum lavamentivorans DS-1 827 1037 211 TGN
Staphylococcus lugdunensis M23590 772 1054 283 TKK
Streptococcus sanguinis SK49 1123 1421 299 TRM
Elusimicrobium minutum Peil91 910 1195 286 TTG Nitrobacter hamburgensis X14 914 1166 253 VAY
Mycoplasma synoviae 53 991 1314 324 VGF
Sphaerochaeta globus str. Buddy 877 1179 303 VKG
Ilyobacter polytropus DSM 2926 837 1092 256 VNG
Rhodovulum sp. PH10 821 1059 239 VPY
Bifidobacterium longum DJO10A 904 1187 284 VRK
Amino acid sequences described in Table 28:
SEQ ID NO: 304
MKRNYILGLDIGITSVGYGI IDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT GNELSTKEQI SRNSKALEEKYVAELQLERLKKDGEVRGS INRFKTSDYVKEAKQLLKVQKAYHQ LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY NALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK PEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP VVKRSFIQS IKVINAI IKKYGLPNDI I IELAREKNSKDAQKMINEMQKRNRQTNERIEEI IRTT GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVK QEENSKKGNRTPFQYLSSSDSKI SYETFKKHILNLAKGKGRI SKTKKEYLLEERDINRFSVQKD FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKS INGGFTSFLRRKWKFKKERNKGYKHHAED ALI IA ADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNQA EFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRI IKTIASKT QS IKKYSTDILGNLYEVKSKKHPQI IKKG
SEQ ID NO: 305
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD
SEQ ID NO: 306
MARILAFDIGI SS IGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKAR LNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLI SPYELRFRALNELLSKQDFARVILHIAKR RGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYE RCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAP KNSPLAFMFVALTRI INLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYE FKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDS LSKLEFKDHL I SFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVT NPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELEC EKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKI SDLQDEKMLEIDHIYPYSRSFDDSYMNKVL VFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDT RYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNH LHHAIDAVI IAYANNS IVKAFSDFKKEQESNSAELYAKKI SELDYKNKRKFFEPFSGFRQKVLD KIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFR VDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILI QTKDMQEPEFVYY AFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKS IGIQNLKVF EKYIVSALGEVTKAEFRQREDFKK
SEQ ID NO: 307
MKRILGLDLGTNS IGWALVNEAENKDERSS IVKLGVRVNPLTVDELTNFEKGKS ITTNADRTLK RGMRRNLQRYKLRRETLTEVLKEHKLITEDTILSENGNRTTFETYRLRAKAVTEEI SLEEFARV LLMINKKRGYKSSRKAKGVEEGTLIDGMDIARELYNNNLTPGELCLQLLDAGKKFLPDFYRSDL QNELDRIWEKQKEYYPEILTDVLKEELRGKKRDAVWAICAKYFVWKENYTEWNKEKGKTEQQER EHKLEGIYSKRKRDEAKRENLQWRVNGLKEKLSLEQLVIVFQEMNTQINNSSGYLGAI SDRSKE LYFNKQTVGQYQMEMLDKNPNASLRNMVFYRQDYLDEFNMLWEKQAVYHKELTEELKKEIRDI I IFYQRRLKSQKGLIGFCEFESRQIEVDIDGKKKIKTVGNRVI SRSSPLFQEFKIWQILNNIEVT VVGKKRKRRKLKENYSALFEELNDAEQLELNGSRRLCQEEKELLAQELFIRDKMTKSEVLKLLF DNPQELDLNFKTIDGNKTGYALFQAYSKMIEMSGHEPVDFKKPVEKVVEYIKAVFDLLNWNTDI LGFNSNEELDNQPYYKLWHLLYSFEGDNTPTGNGRLIQKMTELYGFEKEYATILANVSFQDDYG SLSAKAIHKILPHLKEGNRYDVACVYAGYRHSESSLTREEIANKVLKDRLMLLPKNSLHNPVVE KILNQMVNVINVI IDIYGKPDEIRVELARELKKNAKEREELTKS IAQTTKAHEEYKTLLQTEFG LTNVSRTDILRYKLYKELESCGYKTLYSNTYI SREKLFSKEFDIEHI IPQARLFDDSFSNKTLE ARSVNIEKGNKTAYDFVKEKFGESGADNSLEHYLNNIEDLFKSGKI SKTKYNKLKMAEQDIPDG FIERDLRNTQYIAKKALSMLNEI SHRVVATSGSVTDKLREDWQLIDVMKELNWEKYKALGLVEY FEDRDGRQIGRIKDWTKRNDHRHHAMDALTVAFTKDVFIQYFNNKNASLDPNANEHAIKNKYFQ NGRAIAPMPLREFRAEAKKHLENTLI S IKAKNKVITGNINKTRKKGGVNKNMQQTPRGQLHLET IYGSGKQYLTKEEKVNASFDMRKIGTVSKSAYRDALLKRLYENDNDPKKAFAGKNSLDKQPIWL DKEQMRKVPEKVKIVTLEAIYTIRKEI SPDLKVDKVIDVGVRKILIDRLNEYGNDAKKAFSNLD KNPIWLNKEKGI S IKRVTI SGI SNAQSLHVKKDKDGKPILDENGRNIPVDFVNTGNNHHVAVYY RPVIDKRGQLVVDEAGNPKYELEEVVVSFFEAVTRANLGLPI IDKDYKTTEGWQFLFSMKQNEY FVFPNEKTGFNPKEIDLLDVENYGLISPNLFRVQKFSLKNYVFRHHLETTIKDTSSILRGITWI DFRSSKGLDTIVKVRVNHIGQIVSVGEY
SEQ ID NO: 308
MSRKNYVDDYAI SLDIGNASVGWSAFTPNYRLVRAKGHELIGVRLFDPADTAESRRMARTTRRR YSRRRWRLRLLDALFDQALSEIDPSFLARRKYSWVHPDDENNADCWYGSVLFDSNEQDKRFYEK YPTIYHLRKALMEDDSQHDIREIYLAIHHMVKYRGNFLVEGTLESSNAFKEDELLKLLGRITRY EMSEGEQNSDIEQDDENKLVAPANGQLADALCATRGSRSMRVDNALEALSAVNDLSREQRAIVK AIFAGLEGNKLDLAKIFVSKEFSSENKKILGIYFNKSDYEEKCVQIVDSGLLDDEEREFLDRMQ GQYNAIALKQLLGRSTSVSDSKCASYDAHRANWNLIKLQLRTKENEKDINENYGILVGWKIDSG QRKSVRGESAYENMRKKANVFFKKMIETSDLSETDKNRLIHDIEEDKLFPIQRDSDNGVIPHQL HQNELKQI IKKQGKYYPFLLDAFEKDGKQINKIEGLLTFRVPYFVGPLVVPEDLQKSDNSENHW MVRKKKGEITPWNFDEMVDKDASGRKFIERLVGTDSYLLGEPTLPKNSLLYQEYEVLNELNNVR LSVRTGNHWNDKRRMRLGREEKTLLCQRLFMKGQTVTKRTAENLLRKEYGRTYELSGLSDESKF TSSLSTYGKMCRIFGEKYVNEHRDLMEKIVELQTVFEDKETLLHQLRQLEGI SEADCALLVNTH YTGWGRLSRKLLTTKAGECKI SDDFAPRKHS I IEIMRAEDRNLMEI ITDKQLGFSDWIEQENLG AENGSSLMEVVDDLRVSPKVKRGI IQS IRLIDDI SKAVGKRPSRIFLELADDIQPSGRTI SRKS RLQDLYRNANLGKEFKGIADELNACSDKDLQDDRLFLYYTQLGKDMYTGEELDLDRLSSAYDID HI IPQAVTQNDS IDNRVLVARAENARKTDSFTYMPQIADRMRNFWQILLDNGLI SRVKFERLTR QNEFSEREKERFVQRSLVETRQIMKNVATLMRQRYGNSAAVIGLNAELTKEMHRYLGFSHKNRD INDYHHAQDALCVGIAGQFAANRGFFADGEVSDGAQNSYNQYLRDYLRGYREKLSAEDRKQGRA FGFIVGSMRSQDEQKRVNPRTGEVVWSEEDKDYLRKVMNYRKMLVTQKVGDDFGALYDETRYAA TDPKGIKGIPFDGAKQDTSLYGGFSSAKPAYAVLIESKGKTRLVNVTMQEYSLLGDRPSDDELR KVLAKKKSEYAKANILLRHVPKMQLIRYGGGLMVIKSAGELNNAQQLWLPYEEYCYFDDLSQGK GSLEKDDLKKLLDS ILGSVQCLYPWHRFTEEELADLHVAFDKLPEDEKKNVITGIVSALHADAK TANLS IVGMTGSWRRMNNKSGYTFSDEDEFIFQSPSGLFEKRVTVGELKRKAKKEVNSKYRTNE KRLPTLSGASQP
SEQ ID NO: 309
METQTSNQLITSHLKDYPKQDYFVGLDIGTNSVGWAVTNTSYELLKFHSHKMWGSRLFEEGESA VTRRGFRSMRRRLERRKLRLKLLEELFADAMAQVDSTFFIRLHESKYHYEDKTTGHSSKHILFI DEDYTDQDYFTEYPTIYHLRKDLMENGTDDIRKLFLAVHHILKYRGNFLYEGATFNSNAFTFED VLKQALVNITFNCFDTNSAI SS I SNILMESGKTKSDKAKAIERLVDTYTVFDEVNTPDKPQKEQ VKEDKKTLKAFANLVLGLSANLIDLFGSVEDIDDDLKKLQIVGDTYDEKRDELAKVWGDEIHI I DDCKSVYDAI ILMS IKEPGLTI SQSKVKAFDKHKEDLVILKSLLKLDRNVYNEMFKSDKKGLHN YVHYIKQGRTEETSCSREDFYKYTKKIVEGLADSKDKEYILNEIELQTLLPLQRIKDNGVIPYQ LHLEELKVILDKCGPKFPFLHTVSDGFSVTEKLIKMLEFRIPYYVGPLNTHHNIDNGGFSWAVR KQAGRVTPWNFEEKIDREKSAAAFIKNLTNKCTYLFGEDVLPKSSLLYSEFMLLNELNNVRIDG KALAQGVKQHLIDSIFKQDHKKMTKNRIELFLKDNNYITKKHKPEITGLDGEIKNDLTSYRDMV RILGNNFDVSMAEDI ITDITIFGESKKMLRQTLRNKFGSQLNDETIKKLSKLRYRDWGRLSKKL LKGIDGCDKAGNGAPKTI IELMRNDSYNLMEILGDKFSFMECIEEENAKLAQGQVVNPHDI IDE LALSPAVKRAVWQALRIVDEVAHIKKALPSRIFVEVARTNKSEKKKKDSRQKRLSDLYSAIKKD DVLQSGLQDKEFGALKSGLANYDDAALRSKKLYLYYTQMGRCAYTGNI IDLNQLNTDNYDIDHI YPRSLTKDDSFDNLVLCERTANAKKSDIYPIDNRIQTKQKPFWAFLKHQGLI SERKYERLTRIA PLTADDLSGFIARQLVETNQSVKATTTLLRRLYPDIDVVFVKAENVSDFRHNNNFIKVRSLNHH HHAKDAYLNIVVGNVYHEKFTRNFRLFFKKNGANRTYNLAKMFNYDVICTNAQDGKAWDVKTSM NTVKKMMASNDVRVTRRLLEQSGALADATIYKASVAAKAKDGAYIGMKTKYSVFADVTKYGGMT KIKNAYS I IVQYTGKKGEEIKEIVPLPIYLINRNATDIELIDYVKSVIPKAKDI S IKYRKLCIN QLVKVNGFYYYLGGKTNDKIYIDNAIELVVPHDIATYIKLLDKYDLLRKENKTLKASS ITTS IY INTSTVVSLNKVGIDVFDYFMSKLRTPLYMKMKGNKVDELSSTGRSKFIKMTLEEQS IYLLEV LNLLTNSKTTFDVKPLGITGSRSTIGVKIHNLDEFKI INES ITGLYSNEVTIV
SEQ ID NO: 310
MTKLNQPYGIGLDIGSNS IGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLS RTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEI SPKDKDRFKYEKRLFNDRTDAEFYEDYPSMY HLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYP DLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLK TKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAG MSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTK EVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQI IANQSKYYDWLAAPNPVE AHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREA SANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERH SSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENI I TWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLS NHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQ DPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLY FMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGK MKATWRKWHEAGLI SGRKLRNLMLRPDEIDKFAKGFVARQLVETRQI IKLTEQIAAAQYPNTKI IAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVK KFREFNFIGALTHAKK I IAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTI YAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKI SAQNASKI ASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDT YYRNYQELWLSRENQKLLKKLFS IKYEKTQMNHDALQVYKAI IDQVEKFFKLYDINQFRAKLSD AIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQ IVYQSPSGLFKRRIPLADL
SEQ ID NO: 311
MTKEYYLGLDVGTNSVGWAVTDSQYNLCKFKKKDMWGIRLFESANTAKDRRLQRGNRRRLERKK QRIDLLQEIFSPEICKIDPTFFIRLNESRLHLEDKSNDFKYPLFIEKDYSDIEYYKEFPTIFHL RKHLIESEEKQDIRLIYLALHNI IKTRGHFLIDGDLQSAKQLRPILDTFLLSLQEEQNLSVSLS ENQKDEYEEILKNRS IAKSEKVKKLKNLFEI SDELEKEEKKAQSAVIENFCKFIVGNKGDVCKF LRVSKEELEIDSFSFSEGKYEDDIVKNLEEKVPEKVYLFEQMKAMYDWNILVDILETEEYI SFA KVKQYEKHKTNLRLLRDI ILKYCTKDEYNRMFNDEKEAGSYTAYVGKLKKNNKKYWIEKKRNPE EFYKSLGKLLDKIEPLKEDLEVLTMMIEECKNHTLLPIQKNKDNGVIPHQVHEVELKKILENAK KYYSFLTETDKDGYSVVQKIES IFRFRIPYYVGPLSTRHQEKGSNVWMVRKPGREDRIYPWNME EI IDFEKSNENFITRMTNKCTYLIGEDVLPKHSLLYSKYMVLNELNNVKVRGKKLPTSLKQKVF EDLFENKSKVTGKNLLEYLQIQDKDIQIDDLSGFDKDFKTSLKSYLDFKKQIFGEEIEKES IQN MIEDI IKWITIYGNDKEMLKRVIRANYSNQLTEEQMKKITGFQYSGWGNFSKMFLKGI SGSDVS TGETFDI ITAMWETDNNLMQILSKKFTFMDNVEDFNSGKVGKIDKITYDSTVKEMFLSPENKRA VWQTIQVAEEIKKVMGCEPKKIFIEMARGGEKVKKRTKSRKAQLLELYAACEEDCRELIKEIED RDERDFNSMKLFLYYTQFGKCMYSGDDIDINELIRGNSKWDRDHIYPQSKIKDDS IDNLVLVNK TYNAKKSNELLSEDIQKKMHSFWLSLLNKKLITKSKYDRLTRKGDFTDEELSGFIARQLVETRQ STKAIADIFKQIYSSEVVYVKSSLVSDFRKKPLNYLKSRRVNDYHHAKDAYLNIVVGNVYNKKF TSNPIQWMKKNRDTNYSLNKVFEHDVVINGEVIWEKCTYHEDTNTYDGGTLDRIRKIVERDNIL YTEYAYCEKGELFNATIQNKNGNSTVSLKKGLDVKKYGGYFSANTSYFSLIEFEDKKGDRARHI IGVPIYIANMLEHSPSAFLEYCEQKGYQNVRILVEKIKKNSLLI INGYPLRIRGENEVDTSFKR AIQLKLDQKNYELVRNIEKFLEKYVEKKGNYPIDENRDHITHEKMNQLYEVLLSKMKKFNKKGM ADPSDRIEKSKPKFIKLEDLIDKINVINKMLNLLRCDNDTKADLSLIELPKNAGSFVVKKNTIG KSKI ILVNQSVTGLYENRREL
SEQ ID NO: 312
MARDYSVGLDIGTSSVGWAAIDNKYHLIRAKSKNLIGVRLFDSAVTAEKRRGYRTTRRRLSRRH WRLRLLNDIFAGPLTDFGDENFLARLKYSWVHPQDQSNQAHFAAGLLFDSKEQDKDFYRKYPTI YHLRLALMNDDQKHDLREVYLAIHHLVKYRGHFLIEGDVKADSAFDVHTFADAIQRYAESNNSD ENLLGKIDEKKLSAALTDKHGSKSQRAETAETAFDILDLQSKKQIQAILKSVVGNQANLMAIFG LDSSAI SKDEQKNYKFSFDDADIDEKIADSEALLSDTEFEFLCDLKAAFDGLTLKMLLGDDKTV SAAMVRRFNEHQKDWEYIKSHIRNAKNAGNGLYEKSKKFDGINAAYLALQSDNEDDRKKAKKIF QDEI SSADIPDDVKADFLKKIDDDQFLPIQRTKNNGTIPHQLHRNELEQI IEKQGIYYPFLKDT YQENSHELNKITALINFRVPYYVGPLVEEEQKIADDGKNIPDPTNHWMVRKSNDTITPWNLSQV VDLDKSGRRFIERLTGTDTYLIGEPTLPKNSLLYQKFDVLQELNNIRVSGRRLDIRAKQDAFEH LFKVQKTVSATNLKDFLVQAGYI SEDTQIEGLADVNGKNFN ALTTYNYLVSVLGREFVENPSN EELLEEITELQTVFEDKKVLRRQLDQLDGLSDHNREKLSRKHYTGWGRI SKKLLTTKIVQNADK IDNQTFDVPRMNQS I IDTLYNTKMNLMEI IN AEDDFGVRAWIDKQNTTDGDEQDVYSLIDELA GPKEIKRGIVQSFRILDDITKAVGYAPKRVYLEFARKTQESHLTNSRKNQLSTLLKNAGLSELV TQVSQYDAAALQNDRLYLYFLQQGKDMYSGEKLNLDNLSNYDIDHI IPQAYTKDNSLDNRVLVS NITNRRKSDSSNYLPALIDKMRPFWSVLSKQGLLSKHKFANLTRTRDFDDMEKERFIARSLVET RQIIKNVASLIDSHFGGETKAVAIRSSLTADMRRYVDIPKNRDINDYHHAFDALLFSTVGQYTE NSGLMKKGQLSDSAGNQYNRYIKEWIHAARLNAQSQRVNPFGFVVGSMRNAAPGKLNPETGEIT PEENADWS IADLDYLHKVMNFRKITVTRRLKDQKGQLYDESRYPSVLHDAKSKAS INFDKHKPV DLYGGFSSAKPAYAALIKFKNKFRLVNVLRQWTYSDKNSEDYILEQIRGKYPKAEMVLSHIPYG QLVKKDGALVTI SSATELHNFEQLWLPLADYKLINTLLKTKEDNLVDILHNRLDLPEMTIESAF YKAFDS ILSFAFNRYALHQNALVKLQAHRDDFNALNYEDKQQTLERILDALHASPASSDLKKIN LSSGFGRLFSPSHFTLADTDEFIFQSVTGLFSTQKTVAQLYQETK
SEQ ID NO: 313
MVYDVGLDIGTGSVGWVALDENGKLARAKGKNLVGVRLFDTAQTAADRRGFRTTRRRLSRRKWR LRLLDELFSAEINEIDSSFFQRLKYSYVHPKDEENKAHYYGGYLFPTEEETKKFHRSYPTIYHL RQELMAQPNKRFDIREIYLAIHHLVKYRGHFLSSQEKITIGSTYNPEDLANAIEVYADEKGLSW ELNNPEQLTEI I SGEAGYGLNKSMKADEALKLFEFDNNQDKVAIKTLLAGLTGNQIDFAKLFGK DISDKDEAKLWKLKLDDEALEEKSQTILSQLTDEEIELFHAVVQAYDGFVLIGLLNGADSVSAA MVQLYDQHREDRKLLKSLAQKAGLKHKRFSEIYEQLALATDEATIKNGI STARELVEESNLSKE VKEDTLRRLDENEFLPKQRTKANSVIPHQLHLAELQKILQNQGQYYPFLLDTFEKEDGQDNKIE ELLRFRIPYYVGPLVTKKDVEHAGGDADNHWVERNEGFEKSRVTPWNFDKVFNRDKAARDFIER LTGNDTYLIGEKTLPQNSLRYQLFTVLNELNNVRVNGKKFDSKTKADLINDLFKARKTVSLSAL KDYLKAQGKGDVTITGLADESKFNSSLSSYNDLKKTFDAEYLENEDNQETLEKI IEIQTVFEDS KIASRELSKLPLDDDQVKKLSQTHYTGWGRLSEKLLDSKI IDERGQKVS ILDKLKSTSQNFMS I INNDKYGVQAWITEQNTGSSKLTFDEKVNELTTSPANKRGIKQSFAVLNDIKKAMKEEPRRVYL EFAREDQTSVRSVPRYNQLKEKYQSKSLSEEAKVLKKTLDGNKNKMSDDRYFLYFQQQGKDMYT GRPINFERLSQDYDIDHI IPQAFTKDDSLDNRVLVSRPENARKSDSFAYTDEVQKQDGSLWTSL LKSGFINRKKYERLTKAGKYLDGQKTGFIARQLVETRQI IKNVASLIEGEYENSKAVAIRSEIT ADMRLLVGIKKHREINSFHHAFDALLITAAGQYMQNRYPDRDSTNVYNEFDRYTNDYLKNLRQL SSRDEVRRLKSFGFVVGTMRKGNEDWSEENTSYLRKVMMFKNILTTKKTEKDRGPLNKETIFSP KSGKKLIPLNSKRSDTALYGGYSNVYSAYMTLVRANGKNLLIKIPI S IANQIEVGNLKINDYIV NNPAIKKFEKILI SKLPLGQLVNEDGNLIYLASNEYRHNAKQLWLSTTDADKIAS I SENSSDEE LLEAYDILTSENVKNRFPFFKKDIDKLSQVRDEFLDSDKRIAVIQTILRGLQIDAAYQAPVKI I SKKVSDWHKLQQSGGIKLSDNSEMIYQSATGIFETRVKI SDLL
SEQ ID NO: 314
IVDYCIGLDLGTGSVGWAVVDMNHRLMKRNGKHLWGSRLFSNAETAANRRASRS IRRRYNKRRE RIRLLRAILQDMVLEKDPTFFIRLEHTSFLDEEDKAKYLGTDYKDNYNLFIDEDFNDYTYYHKY PTIYHLRKALCESTEKADPRLIYLALHHIVKYRGNFLYEGQKFNMDASNIEDKLSDIFTQFTSF NNIPYEDDEKKNLEILEILKKPLSKKAKVDEVMTLIAPEKDYKSAFKELVTGIAGNKMNVTKMI LCEPIKQGDSEIKLKFSDSNYDDQFSEVEKDLGEYVEFVDALHNVYSWVELQTIMGATHTDNAS I SEAMVSRYNKHHDDLKLLKDCIKNNVPNKYFDMFRNDSEKSKGYYNYINRPSKAPVDEFYKYV KKCIEKVDTPEAKQILNDIELENFLLKQNSRTNGSVPYQMQLDEMIKI IDNQAEYYPILKEKRE QLLS ILTFRIPYYFGPLNETSEHAWIKRLEGKENQRILPWNYQDIVDVDATAEGFIKRMRSYCT YFPDEEVLPKNSLIVSKYEVYNELNKIRVDDKLLEVDVKNDIYNELFMKNKTVTEKKLKNWLVN NQCCSKDAEIKGFQKENQFSTSLTPWIDFTNIFGKIDQSNFDLIENI IYDLTVFEDKKIMKRRL KKKYALPDDKVKQILKLKYKDWSRLSKKLLDGIVADNRFGSSVTVLDVLEMSRLNLMEI INDKD LGYAQMIEEATSCPEDGKFTYEEVERLAGSPALKRGIWQSLQIVEEITKVMKCRPKYIYIEFER SEEAKERTESKIKKLENVYKDLDEQTKKEYKSVLEELKGFDNTKKI SSDSLFLYFTQLGKCMYS GKKLDIDSLDKYQIDHIVPQSLVKDDSFDNRVLVVPSENQRKLDDLVVPFDIRDKMYRFWKLLF DHELI SPKKFYSLIKTEYTERDEERFINRQLVETRQITKNVTQI IEDHYSTTKVAAIRANLSHE FRVKNHIYKNRDINDYHHAHDAYIVALIGGFMRDRYPNMHDSKAVYSEYMKMFRKNKNDQKRWK DGFVINSMNYPYEVDGKLIWNPDLINEIKKCFYYKDCYCTTKLDQKSGQLFNLTVLSNDAHADK GVTKAVVPVNKNRSDVHKYGGFSGLQYTIVAIEGQKKKGKKTELVKKI SGVPLHLKAAS INEKI NYIEEKEGLSDVRI IKDNIPVNQMIEMDGGEYLLTSPTEYVNARQLVLNEKQCALIADIYNAIY KQDYDNLDDILMIQLYIELTNKMKVLYPAYRGIAEKFESMNENYVVI SKEEKANI IKQMLIVMH RGPQNGNIVYDDFKI SDRIGRLKTKNHNLNNIVFI SQSPTGIYTKKYKL
SEQ ID NO: 315
MKSEKKYYIGLDVGTNSVGWAVTDEFYNILRAKGKDLWGVRLFEKADTAANTRIFRSGRRRNDR KGMRLQILREIFEDEIKKVDKDFYDRLDESKFWAEDKKVSGKYSLFNDKNFSDKQYFEKFPTIF HLRKYLMEEHGKVDIRYYFLAINQMMKRRGHFLIDGQI SHVTDDKPLKEQLILLINDLLKIELE EELMDS IFEILADVNEKRTDKKNNLKELIKGQDFNKQEGNILNS IFES IVTGKAKIKNI I SDED ILEKIKEDNKEDFVLTGDSYEENLQYFEEVLQENITLFNTLKSTYDFLILQS ILKGKSTLSDAQ VERYDEHKKDLEILKKVIKKYDEDGKLFKQVFKEDNGNGYVSYIGYYLNKNKKITAKKKI SNIE FTKYVKGILEKQCDCEDEDVKYLLGKIEQENFLLKQI SS INSVIPHQIHLFELDKILENLAKNY PSFNNKKEEFTKIEKIRKTFTFRIPYYVGPLNDYHKNNGGNAWIFRNKGEKIRPWNFEKIVDLH KSEEEFIKRMLNQCTYLPEETVLPKSS ILYSEYMVLNELNNLRINGKPLDTDVKLKLIEELFKK KTKVTLKS IRDYMVRNNFADKEDFDNSEKNLEIASNMKSYIDFNNILEDKFDVEMVEDLIEKIT IHTGNKKLLKKYIEETYPDLSSSQIQKI INLKYKDWGRLSRKLLDGIKGTKKETEKTDTVINFL RNSSDNLMQI IGSQNYSFNEYIDKLRKKYIPQEI SYEVVENLYVSPSVKKMIWQVIRVTEEITK VMGYDPDKIFIEMAKSEEEKKTTI SRKNKLLDLYKAIKKDERDSQYEKLLTGLNKLDDSDLRSR KLYLYYTQMGRDMYTGEKIDLDKLFDSTHYDKDHI IPQSMKKDDS I INNLVLVNKNANQTTKGN IYPVPSS IRNNPKIYNYWKYLMEKEFI SKEKYNRLIRNTPLTNEELGGFINRQLVETRQSTKAI KELFEKFYQKSKI IPVKASLASDLRKDMNTLKSREVNDLHHAHDAFLNIVAGDVWNREFTSNPI NYVKENREGDKVKYSLSKDFTRPRKSKGKVIWTPEKGRKLIVDTLNKPSVLI SNESHVKKGELF NATIAGKKDYKKGKIYLPLKKDDRLQDVSKYGGYKAINGAFFFLVEHTKSKKRIRS IELFPLHL LSKFYEDKNTVLDYAINVLQLQDPKI I IDKINYRTEI I IDNFSYLISTKSNDGSITVKPNEQMY WRVDEI SNLKKIENKYKKDAILTEEDRKIMESYIDKIYQQFKAGKYKNRRTTDTI IEKYEI IDL DTLDNKQLYQLLVAFI SLSYKTSNNAVDFTVIGLGTECGKPRITNLPDNTYLVYKS ITGIYEKR IRIK
SEQ ID NO: 316
MKLRGIEDDYS IGLDMGTSSVGWAVTDERGTLAHFKRKPTWGSRLFREAQTAAVARMPRGQRRR YVRRRWRLDLLQKLFEQQMEQADPDFFIRLRQSRLLRDDRAEEHADYRWPLFNDCKFTERDYYQ RFPTIYHVRSWLMETDEQADIRLIYLALHNIVKHRGNFLREGQSLSAKSARPDEALNHLRETLR VWSSERGFECS IADNGS ILAMLTHPDLSPSDRRKKIAPLFDVKSDDAAADKKLGIALAGAVIGL KTEFKNIFGDFPCEDSS IYLSNDEAVDAVRSACPDDCAELFDRLCEVYSAYVLQGLLSYAPGQT I SANMVEKYRRYGEDLALLKKLVKIYAPDQYRMFFSGATYPGTGIYDAAQARGYTKYNLGPKKS EYKPSESMQYDDFRKAVEKLFAKTDARADERYRMMMDRFDKQQFLRRLKTSDNGS IYHQLHLEE LKAIVENQGRFYPFLKRDADKLVSLVSFRIPYYVGPLSTRNARTDQHGENRFAWSERKPGMQDE PIFPWNWES I IDRSKSAEKFILRMTGMCTYLQQEPVLPKSSLLYEEFCVLNELNGAHWS IDGDD EHRFDAADREGI IEELFRRKRTVSYGDVAGWMERERNQIGAHVCGGQGEKGFESKLGSYIFFCK DVFKVERLEQSDYPMIERI ILWNTLFEDRKILSQRLKEEYGSRLSAEQIKTICKKRFTGWGRLS EKFLTGITVQVDEDSVS IMDVLREGCPVSGKRGRAMVMMEILRDEELGFQKKVDDFNRAFFAEN AQALGVNELPGSPAVRRSLNQS IRIVDEIAS IAGKAPANIFIEVTRDEDPKKKGRRTKRRYNDL KDALEAFKKEDPELWRELCETAPNDMDERLSLYFMQRGKCLYSGRAIDIHQLSNAGIYEVDHI I PRTYVKDDSLENKALVYREENQRKTDMLLIDPEIRRRMSGYWRMLHEAKLIGDKKFRNLLRSRI DDKALKGFIARQLVETGQMVKLVRSLLEARYPETNI I SVKAS I SHDLRTAAELVKCREANDFHH AHDAFLACRVGLFIQKRHPCVYENPIGLSQVVRNYVRQQADIFKRCRTIPGSSGFIVNSFMTSG FDKETGEIFKDDWDAEAEVEGIRRSLNFRQCFI SRMPFEDHGVFWDATIYSPRAKKTAALPLKQ GLNPSRYGSFSREQFAYFFIYKARNPRKEQTLFEFAQVPVRLSAQIRQDENALERYARELAKDQ GLEFIRIERSKILKNQLIEIDGDRLCITGKEEVRNACELAFAQDEMRVIRMLVSEKPVSRECVI SLFNRILLHGDQASRRLSKQLKLALLSEAFSEASDNVQRNVVLGLIAIFNGSTNMVNLSDIGGS KFAGNVRIKYKKELASPKVNVHLIDQSVTGMFERRTKIGL
SEQ ID NO: 317
MENKQYYIGLDVGTNSVGWAVTDTSYNLLRAKGKDMWGARLFEKANTAAERRTKRTSRRRSERE KARKAMLKELFADEINRVDPSFFIRLEESKFFLDDRSENNRQRYTLFNDATFTDKDYYEKYKTI FHLRSALINSDEKFDVRLVFLAILNLFSHRGHFLNASLKGDGDIQGMDVFYNDLVESCEYFEIE LPRITNIDNFEKILSQKGKSRTKILEELSEELS I SKKDKSKYNLIKLI SGLEASVVELYNIEDI QDENKKIKIGFRESDYEESSLKVKEI IGDEYFDLVERAKSVHDMGLLSNI IGNSKYLCEARVEA YENHHKDLLKIKELLKKYDKKAYNDMFRKMTDKNYSAYVGSVNSNIAKERRSVDKRKIEDLYKY IEDTALKNIPDDNKDKIEILEKIKLGEFLKKQLTASNGVIPNQLQSRELRAILKKAENYLPFLK EKGEKNLTVSEMI IQLFEFQIPYYVGPLDKNPKKDNKANSWAKIKQGGRILPWNFEDKVDVKGS RKEFIEKMVRKCTYI SDEHTLPKQSLLYEKFMVLNEINNIKIDGEKI SVEAKQKIYNDLFVKGK KVSQKDIKKELI SLNIMDKDSVLSGTDTVCNAYLSS IGKFTGVFKEEINKQS IVDMIEDI IFLK TVYGDEKRFVKEEIVEKYGDEIDKDKIKRILGFKFSNWGNLSKSFLELEGADVGTGEVRS HQS LWETNFNLMELLSSRFTYMDELEKRVKKLEKPLSEWTIEDLDDMYLSSPVKRMIWQSMKIVDEI QTVIGYAPKRIFVEMTRSEGEKVRTKSRKDRLKELYNGIKEDSKQWVKELDSKDESYFRSKKMY LYYLQKGRCMYSGEVIELDKLMDDNLYDIDHIYPRSFVKDDSLDNLVLVKKEINNRKQNDPITP QIQASCQGFWKILHDQGFMSNEKYSRLTRKTQEFSDEEKLSFINRQIVETGQATKCMAQILQKS MGEDVDVVFSKARLVSEFRHKFELFKSRLINDFHHANDAYLNIVVGNSYFVKFTRNPANFIKDA RKNPDNPVYKYHMDRFFERDVKSKSEVAWIGQSEGNSGTIVIVKKTMAKNSPLITKKVEEGHGS ITKETIVGVKEIKFGRNKVEKADKTPKKPNLQAYRPIKTSDERLC ILRYGGRTS I S I SGYCLV EYVKKRKTIRSLEAIPVYLGRKDSLSEEKLLNYFRYNLNDGGKDSVSDIRLCLPFI STNSLVKI DGYLYYLGGKNDDRIQLYNAYQLKMKKEEVEYIRKIEKAVSMSKFDEIDREKNPVLTEEKNIEL YNKIQDKFENTVFSKRMSLVKYNKKDLSFGDFLKNKKSKFEEIDLEKQCKVLY I IFNLSNLKE VDLSDIGGSKSTGKCRCKKNITNYKEFKLIQQS ITGLYSCEKDLMTI
SEQ ID NO: 318
MKNLKEYYIGLDIGTASVGWAVTDESYNIPKFNGKKMWGVRLFDDAKTAEERRTQRGSRRRLNR RKERINLLQDLFATEI SKVDPNFFLRLDNSDLYREDKDEKLKSKYTLFNDKDFKDRDYHKKYPT IHHLIMDLIEDEGKKDIRLLYLACHYLLKNRGHFIFEGQKFDTKNSFDKS INDLKIHLRDEY I DLEFNNEDLIEI ITDTTLNKTNKKKELKNIVGDTKFLKAI SAIMIGSSQKLVDLFEDGEFEETT VKSVDFSTTAFDDKYSEYEEALGDTI SLLNILKS IYDSS ILENLLKDADKSKDGNKYI SKAFVK KFNKHGKDLKTLKRI IKKYLPSEYA IFRNKS INDNYVAYTKS ITSNKRTKASKFTKQEDFYK FIKKHLDTIKETKLNSSENEDLKLIDEMLTDIEFKTFIPKLKSSDNGVIPYQLKLMELKKILDN QSKYYDFLNESDEYGTVKDKVES IMEFRIPYYVGPLNPDSKYAWIKRENTKITPWNFKDIVDLD SSREEFIDRLIGRCTYLKEEKVLPKASLIYNEFMVLNELNNLKLNEFLITEEMKKAIFEELFKT KKKVTLKAVSNLLKKEFNLTGDILLSGTDGDFKQGLNSYIDFKNI IGDKVDRDDYRIKIEEI IK LIVLYEDDKTYLKKKIKSAYKNDFTDDEIKKIAALNYKDWGRLSKRFLTGIEGVDKTTGEKGS I IYFMREYNLNLMELMSGHYTFTEEVEKLNPVENRELCYEMVDELYLSPSVKRMLWQSLRVVDEI KRIIGKDPKKIFIEMARAKEAKNSRKESRKNKLLEFYKFGKKAFINEIGEERYNYLLNEINSEE ESKFRWDNLYLYYTQLGRCMYSLEPIDLADLKSN IYDQDHIYPKSKIYDDSLENRVLVKKNLN HEKGNQYPIPEKVLNKNAYGFWKILFDKGLIGQKKYTRLTRRTPFEERELAEFIERQIVETRQA TKETANLLK ICQDSEIVYSKAENASRFRQEFDI IKCRTVNDLHHMHDAYL IVVGNVYNTKFT KNPLNFIKDKDNVRSYNLENMFKYDVVRGSYTAWIADDSEGNVKAATIKKVKRELEGKNYRFTR MSYIGTGGLYDQNLMRKGKGQIPQKENTNKSNIEKYGGYNKASSAYFALIESDGKAGRERTLET IPIMVYNQEKYGNTEAVDKYLKDNLELQDPKILKDKIKINSLIKLDGFLYNIKGKTGDSLSIAG SVQLIVNKEEQKLIKKMDKFLVKKKDNKDIKVTSFD IKEEELIKLYKTLSDKLNNGIYSNKRN NQAKNI SEALDKFKEI S IEEKIDVLNQI ILLFQSYNNGCNLKS IGLSAKTGVVFIPKKLNYKEC KLINQSITGLFENEVDLLNL
SEQ ID NO: 319
MGKMYYLGLDIGTNSVGYAVTDPSYHLLKFKGEPMWGAHVFAAGNQSAERRSFRTSRRRLDRRQ QRVKLVQEIFAPVI SPIDPRFFIRLHESALWRDDVAETDKHIFFNDPTYTDKEYYSDYPTIHHL IVDLMESSEKHDPRLVYLAVAWLVAHRGHFLNEVDKDNIGDVLSFDAFYPEFLAFLSDNGVSPW VCESKALQATLLSRNSVNDKYKALKSLIFGSQKPEDNFDANI SEDGLIQLLAGKKVKVNKLFPQ ESNDASFTLNDKEDAIEEILGTLTPDECEWIAHIRRLFDWAIMKHALKDGRTI SESKVKLYEQH HHDLTQLKYFVKTYLAKEYDDIFRNVDSETTKNYVAYSYHVKEVKGTLPKNKATQEEFCKYVLG KVKNIECSEADKVDFDEMIQRLTDNSFMPKQVSGENRVIPYQLYYYELKTILNKAASYLPFLTQ CGKDAI SNQDKLLS IMTFRIPYFVGPLRKDNSEHAWLERKAGKIYPWNFNDKVDLDKSEEAFIR RMTNTCTYYPGEDVLPLDSLIYEKFMILNEINNIRIDGYPI SVDVKQQVFGLFEKKRRVTVKDI QNLLLSLGALDKHGKLTGIDTTIHSNYNTYHHFKSLMERGVLTRDDVERIVERMTYSDDTKRVR LWLNNNYGTLTADDVKHI SRLRKHDFGRLSKMFLTGLKGVHKETGERAS ILDFMWNTNDNLMQL LSECYTFSDEITKLQEAYYAKAQLSLNDFLDSMYI SNAVKRPIYRTLAVVNDIRKACGTAPKRI FIEMARDGESKKKRSVTRREQIKNLYRS IRKDFQQEVDFLEKILENKSDGQLQSDALYLYFAQL GRDMYTGDPIKLEHIKDQSFYNIDHIYPQSMVKDDSLDNKVLVQSEINGEKSSRYPLDAAIRNK MKPLWDAYYNHGLI SLKKYQRLTRSTPFTDDEKWDFINRQLVETRQSTKALAILLKRKFPDTEI VYSKAGLSSDFRHEFGLVKSRNINDLHHAKDAFLAIVTGNVYHERFNRRWFMVNQPYSVKTKTL FTHS IKNGNFVAWNGEEDLGRIVKMLKQNKNTIHFTRFSFDRKEGLFDIQPLKASTGLVPRKAG LDVVKYGGYDKSTAAYYLLVRFTLEDKKTQHKLMMIPVEGLYKARIDHDKEFLTDYAQTTI SEI LQKDKQKVI IMFPMGTRHIKLNSMI S IDGFYLS IGGKSSKGKSVLCHAMVPLIVPHKIECYIK AMESFARKFKENNKLRIVEKFDKITVEDNLNLYELFLQKLQHNPYNKFFSTQFDVLTNGRSTFT KLSPEEQVQTLLNILS IFKTCRSSGCDLKS INGSAQAARIMI SADLTGLSKKYSDIRLVEQSAS GLFVSKSQNLLEYL
SEQ ID NO: 320
MTKKEQPYNIGLDIGTSSVGWAVTNDNYDLLNIKKKNLWGVRLFEEAQTAKETRLNRSTRRRYR RRKNRINWLNEIFSEELAKTDPSFLIRLQNSWVSKKDPDRKRDKYNLFIDGPYTDKEYYREFPT IFHLRKELILNKDKADIRLIYLALH ILKYRGNFTYEHQKF I SNLNNNLSKELIELNQQLIKY DI SFPDDCDWNHI SDILIGRGNATQKSSNILKDFTLDKETKKLLKEVINLILGNVAHLNTIFKT SLTKDEEKLNFSGKDIESKLDDLDS ILDDDQFTVLDAANRIYSTITLNEILNGESYFSMAKVNQ YENHAIDLCKLRDMWHTTKNEEAVEQSRQAYDDYINKPKYGTKELYTSLKKFLKVALPTNLAKE AEEKI SKGTYLVKPRNSENGVVPYQLNKIEMEKI IDNQSQYYPFLKENKEKLLS ILSFRIPYYV GPLQSAEKNPFAWMERKSNGHARPWNFDEIVDREKSSNKFIRRMTVTDSYLVGEPVLPKNSLIY QRYEVLNELN IRITENLKTNPIGSRLTVETKQRIYNELFKKYKKVTVKKLTKWLIAQGYYKNP ILIGLSQKDEFNSTLTTYLDMKKIFGSSFMEDNKNYDQIEELIEWLTIFEDKQILNEKLHSSKY SYTPDQIKKI SNMRYKGWGRLSKKILMDITTETNTPQLLQLSNYS ILDLMWATNNNFI S IMSND KYDFKNYIENHNLNKNEDQNI SDLVNDIHVSPALKRGITQS IKIVQEIVKFMGHAPKHIFIEVT RETKKSEITTSREKRIKRLQSKLLNKANDFKPQLREYLVPNKKIQEELKKHKNDLSSERIMLYF LQNGKSLYSEESLNINKLSDYQVDHILPRTYIPDDSLENKALVLAKENQRKADDLLLNSNVIDR NLERWTYMLNNNMIGLKKFKNLTRRVITDKDKLGFIHRQLVQTSQMVKGVANILDNMYKNQGTT CIQARANLSTAFRKALSGQDDTYHFKHPELVKNRNVNDFHHAQDAYLASFLGTYRLRRFPTNEM LLMNGEYNKFYGQVKELYSKKKKLPDSRKNGFI I SPLVNGTTQYDRNTGEI IWNVGFRDKILKI FNYHQCNVTRKTEIKTGQFYDQTIYSPKNPKYKKLIAQKKDMDPNIYGGFSGDNKSSITIVKID NNKIKPVAIPIRLINDLKDKKTLQNWLEENVKHKKS IQI IKNNVPIGQI IYSKKVGLLSLNSDR EVANRQQLILPPEHSALLRLLQIPDEDLDQILAFYDKNILVEILQELITKMKKFYPFYKGEREF LIANIENFNQATTSEKVNSLEELITLLHANSTSAHLIFNNIEKKAFGRKTHGLTLNNTDFIYQS VTGLYETRIHIE
SEQ ID NO: 321
MTKFNKNYS IGLDIGVSSVGYAVVTEDYRVPAFKFKVLGNTEKEKIKKNLIGSTTFVSAQPAKG TRVFRVNRRRIDRRNHRITYLRDIFQKEIEKVDKNFYRRLDESFRVLGDKSEDLQIKQPFFGDK ELETAYHKKYPTIYHLRKHLADADKNSPVADIREVYMAI SHILKYRGHFLTLDKINPNNINMQN SWIDFIESCQEVFDLEI SDESKNIADIFKSSENRQEKVKKILPYFQQELLKKDKS IFKQLLQLL FGLKTKFKDCFELEEEPDLNFSKENYDENLENFLGSLEEDFSDVFAKLKVLRDTILLSGMLTYT GATHARFSATMVERYEEHRKDLQRFKFFIKQNLSEQDYLDIFGRKTQNGFDVDKETKGYVGYIT NKMVLTNPQKQKTIQQNFYDYI SGKITGIEGAEYFLNKI SDGTFLRKLRTSDNGAIPNQIHAYE LEKI IERQGKDYPFLLENKDKLLS ILTFKIPYYVGPLAKGSNSRFAWIKRATSSDILDDNDEDT RNGKIRPWNYQKLINMDETRDAFITNLIGNDI ILLNEKVLPKRSLIYEEVMLQNELTRVKYKDK YGKAHFFDSELRQNI INGLFKNNSKRVNAKSLIKYLSDNHKDLNAIEIVSGVEKGKSFNSTLKT YNDLKTIFSEELLDSEIYQKELEEI IKVITVFDDKKSIKNYLTKFFGHLEILDEEKINQLSKLR YSGWGRYSAKLLLDIRDEDTGFNLLQFLRNDEENRNLTKLI SDNTLSFEPKIKDIQSKSTIEDD IFDEIKKLAGSPAIKRGILNS IKIVDELVQI IGYPPHNIVIEMARENMTTEEGQKKAKTRKTKL ESALKNIENSLLENGKVPHSDEQLQSEKLYLYYLQNGKDMYTLDKTGSPAPLYLDQLDQYEVDH I IPYSFLPIDS IDNKVLTHRENNQQKLNNIPDKETVANMKPFWEKLYNAKLI SQTKYQRLTTSE RTPDGVLTESMKAGFIERQLVETRQI IKHVARILDNRFSDTKI ITLKSQLITNFRNTFHIAKIR ELNDYHHAHDAYLAVVVGQTLLKVYPKLAPELIYGHHAHFNRHEENKATLRKHLYS IMRFFNN PDSKVSKDIWDCNRDLPI IKDVIYNSQINFVKRTMIKKGAFYNQNPVGKFNKQLAANNRYPLKT KALCLDTS IYGGYGPMNSALS I I I IAERFNEKKGKIETVKEFHDIFI IDYEKFNNNPFQFLNDT SENGFLKKNNINRVLGFYRIPKYSLMQKIDGTRMLFESKSNLHKATQFKLTKTQNELFFHMKRL LTKSNLMDLKSKSAIKESQNFILKHKEEFD I SNQLSAFSQKMLGNTTSLKNLIKGYNERKIKE IDIRDETIKYFYDNFIKMFSFVKSGAPKDINDFFDNKCTVARMRPKPDKKLLNATLIHQS ITGL YETRIDLSKLGED
SEQ ID NO: 322
MKQEYFLGLDMGTGSLGWAVTDSTYQVMRKHGKALWGTRLFESASTAEERRMFRTARRRLDRRN WRIQVLQEIFSEEI SKVDPGFFLRMKESKYYPEDKRDAEGNCPELPYALFVDDNYTDKNYHKDY PTIYHLRKMLMETTEIPDIRLVYLVLHHMMKHRGHFLLSGDI SQIKEFKSTFEQLIQNIQDEEL EWHI SLDDAAIQFVEHVLKDRNLTRSTKKSRLIKQLNAKSACEKAILNLLSGGTVKLSDIFNNK ELDESERPKVSFADSGYDDYIGIVEAELAEQYYI IASAKAVYDWSVLVEILGNSVS I SEAKIKV YQKHQADLKTLKKIVRQYMTKEDYKRVFVDTEEKLNNYSAYIGMTKKNGKKVDLKSKQCTQADF YDFLKKNVIKVIDHKEITQEIESEIEKENFLPKQVTKDNGVIPYQVHDYELKKILDNLGTRMPF IKENAEKIQQLFEFRIPYYVGPLNRVDDGKDGKFTWSVRKSDARIYPWNFTEVIDVEASAEKFI RRMTNKCTYLVGEDVLPKDSLVYSKFMVLNELNNLRLNGEKI SVELKQRIYEELFCKYRKVTRK KLERYLVIEGIAKKGVEITGIDGDFKASLTAYHDFKERLTDVQLSQRAKEAIVLNVVLFGDDKK LLKQRLSKMYPNLTTGQLKGICSLSYQGWGRLSKTFLEEITVPAPGTGEVWNIMTALWQTNDNL MQLLSRNYGFTNEVEEFNTLKKETDLSYKTVDELYVSPAVKRQIWQTLKVVKEIQKVMGNAPKR VFVEMAREKQEGKRSDSRKKQLVELYRACKNEERDWITELNAQSDQQLRSDKLFLYYIQKGRCM YSGETIQLDELWDNTKYDIDHIYPQSKTMDDSLNNRVLVKKNYNAIKSDTYPLSLDIQKKMMSF WKMLQQQGFITKEKYVRLVRSDELSADELAGFIERQIVETRQSTKAVATILKEALPDTEIVYVK AGNVSNFRQTYELLKVREMNDLHHAKDAYLNIVVGNAYFVKFTKNAAWFIRNNPGRSYNLKRMF EFDIERSGEIAWKAGNKGS IVTVKKVMQKN ILVTRKAYEVKGGLFDQQIMKKGKGQVPIKGND ERLADIEKYGGYNKAAGTYFMLVKSLDKKGKEIRTIEFVPLYLKNQIEINHESAIQYLAQERGL NSPEILLSKIKIDTLFKVDGFKMWLSGRTGNQLIFKGANQLILSHQEAAILKGVVKYVNRKNEN KDAKLSERDGMTEEKLLQLYDTFLDKLSNTVYS IRLSAQIKTLTEKRAKFIGLSNEDQCIVLNE ILHMFQCQSGSANLKLIGGPGSAGILVMNN ITACKQI SVINQSPTGIYEKEIDLIKL
SEQ ID NO: 323
MKKPYS IGLDIGTNSVGWAVVTDDYKVPAKKMKVLGNTDKSHIEKNLLGALLFDSGNTAEDRRL KRTARRRYTRRRNRILYLQEIFSEEMGKVDDSFFHRLEDSFLVTEDKRGERHPIFGNLEEEVKY HENFPTIYHLRQYLADNPEKVDLRLVYLALAHI IKFRGHFLIEGKFDTRNNDVQRLFQEFLAVY DNTFENSSLQEQNVQVEEILTDKI SKSAKKDRVLKLFPNEKSNGRFAEFLKLIVGNQADFKKHF ELEEKAPLQFSKDTYEEELEVLLAQIGDNYAELFLSAKKLYDS ILLSGILTVTDVGTKAPLSAS MIQRYNEHQMDLAQLKQFIRQKLSDKYNEVFSDVSKDGYAGYIDGKTNQEAFYKYLKGLLNKIE GSGYFLDKIEREDFLRKQRTFDNGS IPHQIHLQEMRAI IRRQAEFYPFLADNQDRIEKLLTFRI PYYVGPLARGKSDFAWLSRKSADKITPWNFDEIVDKESSAEAFINRMTNYDLYLPNQKVLPKHS LLYEKFTVYNELTKVKYKTEQGKTAFFDANMKQEIFDGVFKVYRKVTKDKLMDFLEKEFDEFRI VDLTGLDKENKVFNASYGTYHDLCKILDKDFLDNSKNEKILEDIVLTLTLFEDREMIRKRLENY SDLLTKEQVKKLERRHYTGWGRLSAELIHGIRNKESRKTILDYLIDDGNSNRNFMQLINDDALS FKEEIAKAQVIGETDNLNQVVSDIAGSPAIKKGILQSLKIVDELVKIMGHQPENIVVEMARENQ FTNQGRRNSQQRLKGLTDS IKEFGSQILKEHPVENSQLQNDRLFLYYLQNGRDMYTGEELDIDY LSQYDIDHI IPQAFIKDNS IDNRVLTSSKENRGKSDDVPSKDVVRKMKSYWSKLLSAKLITQRK FDNLTKAERGGLTDDDKAGFIKRQLVETRQITKHVARILDERFNTETDENNKKIRQVKIVTLKS NLVSNFRKEFELYKVREINDYHHAHDAYLNAVIGKALLGVYPQLEPEFVYGDYPHFHGHKENKA TAKKFFYS IMNFFKKDDVRTDKNGEI IWKKDEHI S IKKVLSYPQV IVKKVEEQTGGFSKES ILPKGNSDKLIPRKTKKFYWDTKKYGGFDSPIVAYS ILVIADIEKGKSKKLKTVKALVGVTIME KMTFERDPVAFLERKGYRNVQEE I IKLPKYSLFKLENGRKRLLASARELQKGNEIVLPNHLGT LLYHAKNIHKVDEPKHLDYVDKHKDEFKELLDVVSNFSKKYTLAEGNLEKIKELYAQNNGEDLK ELASSFINLLTFTAIGAPATFKFFDKNIDRKRYTSTTEILNATLIHQSITGLYETRIDLNKLGG D
SEQ ID NO: 324
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD
SEQ ID NO: 325
MTKPYS IGLDIGTNSVGWAVTTDNYKVPSKKMKVLGNTSKKYIKKNLLGVLLFDSGITAEGRRL KRTARRRYTRRRNRILYLQEIFSTEMATLDDAFFQRLDDSFLVPDDKRDSKYPIFGNLVEEKAY HDEFPTIYHLRKYLADSTKKADLRLVYLALAHMIKYRGHFLIEGEFNSKNNDIQKNFQDFLDTY NAIFESDLSLENSKQLEEIVKDKI SKLEKKDRILKLFPGEKNSGIFSEFLKLIVGNQADFRKCF NLDEKASLHFSKESYDEDLETLLGYIGDDYSDVFLKAKKLYDAILLSGFLTVTDNETEAPLSSA MIKRYNEHKEDLALLKEYIRNI SLKTYNEVFKDDTKNGYAGYIDGKTNQEDFYVYLKKLLAEFE GADYFLEKIDREDFLRKQRTFDNGS IPYQIHLQEMRAILDKQAKFYPFLAKNKERIEKILTFRI PYYVGPLARGNSDFAWS IRKRNEKITPWNFEDVIDKESSAEAFINRMTSFDLYLPEEKVLPKHS LLYETFNVYNELTKVRFIAESMRDYQFLDSKQKKDIVRLYFKDKRKVTDKDI IEYLHAIYGYDG IELKGIEKQFNSSLSTYHDLLNI INDKEFLDDSSNEAI IEEI IHTLTIFEDREMIKQRLSKFEN IFDKSVLKKLSRRHYTGWGKLSAKLINGIRDEKSGNTILDYLIDDGI SNRNFMQLIHDDALSFK KKIQKAQI IGDEDKGNIKEVVKSLPGSPAIKKGILQS IKIVDELVKVMGGRKPES IVVEMAREN QYTNQGKSNSQQRLKRLEKSLKELGSKILKENIPAKLSKIDNNALQNDRLYLYYLQNGKDMYTG DDLDIDRLSNYDIDHI IPQAFLKDNS IDNKVLVSSASNRGKSDDVPSLEVVKKRKTFWYQLLKS KLISQRKFDNLTKAERGGLSPEDKAGFIQRQLVETRQITKHVARLLDEKFNNKKDENNRAVRTV KIITLKSTLVSQFRKDFELYKVREINDFHHAHDAYLNAVVASALLKKYPKLEPEFVYGDYPKYN SFRERKSATEKVYFYS IM IFKKS I SLADGRVIERPLIEVNEETGESVWNKESDLATVRRVLS YPQVNVVKKVEEQNHGLDRGKPKGLFNANLSSKPKPNSNENLVGAKEYLDPKKYGGYAGISNSF TVLVKGTIEKGAKKKITNVLEFQGI S ILDRINYRKDKLNFLLEKGYKDIELI IELPKYSLFELS DGSRRMLAS ILSTNNKRGEIHKGNQIFLSQKFVKLLYHAKRI SNTINENHRKYVENHKKEFEEL FYYILEFNENYVGAKKNGKLLNSAFQSWQNHS IDELCSSFIGPTGSERKGLFELTSRGSAADFE FLGVKIPRYRDYTPSSLLKDATLIHQSVTGLYETRIDLAKLGEG
SEQ ID NO: 326
MKKQKFSDYYLGFDIGTNSVGWCVTDLDYNVLRFNKKDMWGSRLFDEAKTAAERRVQRNSRRRL KRRKWRLNLLEEIFSDEIMKIDSNFFRRLKESSLWLEDKNSKEKFTLFNDDNYKDYDFYKQYPT IFHLRDELIKNPEKKDIRLIYLALHS IFKSRGHFLFEGQNLKEIKNFETLYNNLI SFLEDNGIN KS IDKD IEKLEKI ICDSGKGLKDKEKEFKGIFNSDKQLVAIFKLSVGSSVSLNDLFDTDEYKK EEVEKEKI SFREQIYEDDKPIYYS ILGEKIELLDIAKSFYDFMVLNNILSDSNYI SEAKVKLYE EHKKDLKNLKYI IRKYNKENYDKLFKDKNENNYPAYIGLNKEKDKKEVVEKSRLKIDDLIKVIK GYLPKPERIEEKDKTIFNEILNKIELKTILPKQRI SDNGTLPYQIHEVELEKILENQSKYYDFL NYEENGVSTKDKLLKTFKFRIPYYVGPLNSYHKDKGGNSWIVRKEEGKILPWNFEQKVDIEKSA EEFIKRMTNKCTYLNGEDVIPKDSFLYSEYI ILNELNKVQVNDEFLNEENKRKI IDELFKENKK VSEKKFKEYLLVNQIANRTVELKGIKDSFNSNYVSYIKFKDIFGEKLNLDIYKEI SEKS ILWKC LYGDDKKIFEKKIKNEYGDILNKDEIKKINSFKFNTWGRLSEKLLTGIEFINLETGECYSSVME ALRRTNYNLMELLSSKFTLQES IDNENKEMNEVSYRDLIEESYVSPSLKRAILQTLKIYEEIKK ITGRVPKKVFIEMARGGDESMKNKKIPARQEQLKKLYDSCGNDIANFS IDIKEMKNSLSSYDNN SLRQKKLYLYYLQFGKCMYTGREIDLDRLLQNNDTYDIDHIYPRSKVIKDDSFDNLVLVLKNEN AEKSNEYPVKKEIQEKMKSFWRFLKEKNFI SDEKYKRLTGKDDFELRGFMARQLVNVRQTTKEV GKILQQIEPEIKIVYSKAEIASSFREMFDFIKVRELNDTHHAKDAYLNIVAGNVYNTKFTEKPY RYLQEIKENYDVKKIYNYDIKNAWDKENSLEIVKKNMEKNTV ITRFIKEEKGELFNLNPIKKG ETSNEI I S IKPKLYDGKDNKLNEKYGYYTSLKAAYFIYVEHEKKNKKVKTFERITRIDSTLIKN EKNLIKYLVSQKKLLNPKI IKKIYKEQTLI IDSYPYTFTGVDSNKKVELKNKKQLYLEKKYEQI LKNALKFVEDNQGETEENYKFIYLKKRNNNEKNETIDAVKERY IEFNEMYDKFLEKLSSKDYK NYINNKLYTNFLNSKEKFKKLKLWEKSLILREFLKIFNKNTYGKYEIKDSQTKEKLFSFPEDTG RIRLGQSSLGNNKELLEESVTGLFVKKIKL
SEQ ID NO: 327
MKNYTIGLDIGVASVGWVCIDENYKILNYNNRHAFGVHEFESAESAAGRRLKRGMRRRYNRRKK RLQLLQSLFDSYITDSGFFSKTDSQHFWKNNNEFENRSLTEVLSSLRISSRKYPTIYHLRSDLI ESNKKMDLRLVYLALHNLVKYRGHFLQEGNWSEAASAEGMDDQLLELVTRYAELENLSPLDLSE SQWKAAETLLLNRNLTKTDQSKELTAMFGKEYEPFCKLVAGLGVSLHQLFPSSEQALAYKETKT KVQLSNENVEEVMELLLEEESALLEAVQPFYQQVVLYELLKGETYVAKAKVSAFKQYQKDMASL KNLLDKTFGEKVYRSYFI SDKNSQREYQKSHKVEVLCKLDQFNKEAKFAETFYKDLKKLLEDKS KTS IGTTEKDEMLRI IKAIDSNQFLQKQKGIQNAAIPHQNSLYEAEKILRNQQAHYPFITTEWI EKVKQILAFRIPYYIGPLVKDTTQSPFSWVERKGDAPITPWNFDEQIDKAASAEAFI SRMRKTC TYLKGQEVLPKSSLTYERFEVLNELNGIQLRTTGAESDFRHRLSYEMKCWI IDNVFKQYKTVST KRLLQELKKSPYADELYDEHTGEIKEVFGTQKENAFATSLSGYI SMKS ILGAVVDDNPAMTEEL IYWIAVFEDREILHLKIQEKYPS ITDVQRQKLALVKLPGWGRFSRLLIDGLPLDEQGQSVLDHM EQYSSVFMEVLKNKGFGLEKKIQKMNQHQVDGTKKIRYEDIEELAGSPALKRGIWRSVKIVEEL VSIFGEPANIVLEVAREDGEKKRTKSRKDQWEELTKTTLKNDPDLKSFIGEIKSQGDQRFNEQR FWLYVTQQGKCLYTGKALDIQNLSMYEVDHILPQNFVKDDSLDNLALVMPEANQRKNQVGQNKM PLEI IEANQQYAMRTLWERLHELKLI SSGKLGRLKKPSFDEVDKDKFIARQLVETRQI IKHVRD LLDERFSKSDIHLVKAGIVSKFRRFSEIPKIRDYNNKHHAMDALFAAALIQS ILGKYGKNFLAF DLSKKDRQKQWRSVKGSNKEFFLFKNFGNLRLQSPVTGEEVSGVEYMKHVYFELPWQTTKMTQT GDGMFYKES IFSPKVKQAKYVSPKTEKFVHDEVKNHS ICLVEFTFMKKEKEVQETKFIDLKVIE HHQFLKEPESQLAKFLAEKETNSPI IHARI IRTIPKYQKIWIEHFPYYFI STRELHNARQFEI S YELMEKVKQLSERSSVEELKIVFGLLIDQMNDNYPIYTKSS IQDRVQKFVDTQLYDFKSFEIGF EELKKAVAANAQRSDTFGSRI SKKPKPEEVAIGYES ITGLKYRKPRSVVGTKR
SEQ ID NO: 328
MKKEIKDYFLGLDVGTGSVGWAVTDTDYKLLKANRKDLWGMRCFETAETAEVRRLHRGARRRIE RRKKRIKLLQELFSQEIAKTDEGFFQRMKESPFYAEDKTILQENTLFNDKDFADKTYHKAYPTI NHLIKAWIENKVKPDPRLLYLACH I IKKRGHFLFEGDFDSENQFDTS IQALFEYLREDMEVDI DADSQKVKEILKDSSLKNSEKQSRLNKILGLKPSDKQKKAITNLI SGNKINFADLYDNPDLKDA EKNS I SFSKDDFDALSDDLAS ILGDSFELLLKAKAVYNCSVLSKVIGDEQYLSFAKVKIYEKHK TDLTKLKNVIKKHFPKDYKKVFGYNKNEKNNNNYSGYVGVCKTKSKKLI INNSVNQEDFYKFLK TILSAKSEIKEVNDILTEIETGTFLPKQI SKSNAEIPYQLRKMELEKILSNAEKHFSFLKQKDE KGLSHSEKI IMLLTFKIPYYIGPINDNHKKFFPDRCWVVKKEKSPSGKTTPWNFFDHIDKEKTA EAFITSRTNFCTYLVGESVLPKSSLLYSEYTVLNEINNLQI I IDGK ICDIKLKQKIYEDLFKK YKKITQKQISTFIKHEGICNKTDEVI ILGIDKECTSSLKSYIELK IFGKQVDEISTKNMLEEI IRWATIYDEGEGKTILKTKIKAEYGKYCSDEQIKKILNLKFSGWGRLSRKFLETVTSEMPGFSE PVNI ITAMRETQNNLMELLSSEFTFTENIKKINSGFEDAEKQFSYDGLVKPLFLSPSVKKMLWQ TLKLVKEISHITQAPPKKIFIEMAKGAELEPARTKTRLKILQDLYNNCKNDADAFSSEIKDLSG KIENEDNLRLRSDKLYLYYTQLGKCMYCGKPIEIGHVFDTSNYDIDHIYPQSKIKDDS I SNRVL VCSSCNKNKEDKYPLKSEIQSKQRGFWNFLQRNNFI SLEKLNRLTRATPI SDDETAKFIARQLV ETRQATKVAAKVLEKMFPETKIVYSKAETVSMFRNKFDIVKCREINDFHHAHDAYLNIVVGNVY NTKFTNNPWNFIKEKRDNPKIADTYNYYKVFDYDVKRNNITAWEKGKTI ITVKDMLKRNTPIYT RQAACKKGELFNQTIMKKGLGQHPLKKEGPFS I SKYGGYNKVSAAYYTLIEYEEKGNKIRSLE TIPLYLVKDIQKDQDVLKSYLTDLLGKKEFKILVPKIKINSLLKINGFPCHITGKTNDSFLLRP AVQFCCSNNEVLYFKKI IRFSEIRSQREKIGKTI SPYEDLSFRSYIKENLWKKTKNDEIGEKEF YDLLQKKNLEIYDMLLTKHKDTIYKKRPNSATIDILVKGKEKFKSLI IENQFEVILEILKLFSA TRNVSDLQHIGGSKYSGVAKIGNKI SSLDNCILIYQS ITGIFEKRIDLLKV
SEQ ID NO: 329
MEGQMKNNGNNLQQGNYYLGLDVGTSSVGWAVTDTDYNVLKFRGKSMWGARLFDEASTAEERRT HRGNRRRLARRKYRLLLLEQLFEKEIRKIDDNFFVRLHESNLWADDKSKPSKFLLFNDTNFTDK DYLKKYPTIYHLRSDLIHNSTEHDIRLVFLALHHLIKYRGHFIYDNSANGDVKTLDEAVSDFEE YLNENDIEFNIENKKEFINVLSDKHLTKKEKKI SLKKLYGDITDSENINI SVLIEMLSGSS I SL SNLFKDIEFDGKQNLSLDSDIEETLNDVVDILGDNIDLLIHAKEVYDIAVLTSSLGKHKYLCDA KVELFEKNKKDLMILKKYIKKNHPEDYKKIFSSPTEKKNYAAYSQTNSKNVCSQEEFCLFIKPY IRDMVKSENEDEVRIAKEVEDKSFLTKLKGTNNSVVPYQIHERELNQILKNIVAYLPFMNDEQE DI SVVDKIKLIFKFKIPYYVGPLNTKSTRSWVYRSDEKIYPWNFSNVIDLDKTAHEFMNRLIGR CTYTNDPVLPMDSLLYSKYNVLNEINPIKVNGKAIPVEVKQAIYTDLFENSKKKVTRKS IYIYL LKNGYIEKEDIVSGIDIEIKSKLKSHHDFTQIVQENKCTPEEIERI IKGILVYSDDKSMLRRWL KN IKGLSENDVKYLAKLNYKEWGRLSKTLLTDIYTINPEDGEACS ILDIMWNTNATLMEILSN EKYQFKQ IENYKAENYDEKQNLHEELDDMYI SPAARRS IWQALRIVDEIVDIKKSAPKKIFIE MAREKKSAMKKKRTESRKDTLLELYKSCKSQADGFYDEELFEKLSNESNSRLRRDQLYLYYTQM GRSMYTGKRIDFDKLINDKNTYDIDHIYPRSKIKDDS ITNRVLVEKDINGEKTDIYPI SEDIRQ KMQPFWKILKEKGLINEEKYKRLTRNYELTDEELSSFVARQLVETQQSTKALATLLKKEYPSAK IVYSKAGNVSEFRNRKDKELPKFREINDLHHAKDAYLNIVVGNVYDTKFTEKFFNNIRNENYSL KRVFDFSVPGAWDAKGSTFNTIKKYMAKNNPI IAFAPYEVKGELFDQQIVPKGKGQFPIKQGKD IEKYGGYNKLSSAFLFAVEYKGKKARERSLETVYIKDVELYLQDPIKYCESVLGLKEPQI IKPK ILMGSLFS INNKKLVVTGRSGKQYVCHHIYQLS INDEDSQYLK IAKYLQEEPDG IERQ ILN ITSVN IKLFDVLCTKFNSNTYEI ILNSLKNDVNEGREKFSELDILEQC ILLQLLKAFKCNRE SSNLEKLNNKKQAGVIVIPHLFTKCSVFKVIHQS ITGLFEKEMDLLK
SEQ ID NO: 330
MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKNRR IKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYHLQEA LLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNNIKLNLD YEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFS IMLLGLKFNEGKLFNHADNAEELKGANQ SHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAYDKFRNELKQV KDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKKQYSLLIKELKKI IPQDSELYFEAENDTLLKVLNTTDNAS IPMQINLYEAETILRNQQKYHAEITDEMIEKVLSLIQ FRIPYYVGPLVNDHTASKFGWMERKSNES IKPWNFDEVVDRSKSATQFIRRMTNKCSYLINEDV LPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEHIFKKYKTVSHSKFLEIML NSNHRENFMNHGEKLS IFGTQDDKKFASKLSSYQDMTKIFGDIEGKRAQIEEI IQWITIFEDKK ILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQGHS I IELLRHSDENFMEILTND VYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWSTIKLVRELTS IFGEPEKI IMEFATE DQQKGKKQKSRKQLWDD IKKNKLKSVDEYKYI IDVANKLNNEQLQQEKLWLYLSQNGKCMYSG QS IDLDALLSPNATKHYEVDHIFPRSFIKDDS IDNKVLVIKKMNQTKGDQVPLQFIQQPYERIA YWKSLNKAGLI SDSKLHKLMKPEFTAMDKEGFIQRQLVETRQI SVHVRDFLKEEYPNTKVIPMK AKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNGVVYHGAQLAYPNVDLFDFNFKWEKVREKWKAL GEFNTKQKSRELFFFKKLEKMEVSQGERLI SKIKLDMNHFKINYSRKLA IPQQFYNQTAVSPK TAELKYESNKSNEVVYKGLTPYQTYVVAIKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELA LYLAQRENKDEVLDAQIVYSLNKGDLLYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNN KETNVEKLLIEYDFIAEKVINEYHHYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKVVTAS ATRSDKIGSRKNSMTHRAFLGKGKDVKIAYTS I SGLKTTKPKSLFKLAESRNEL
SEQ ID NO: 331
MAKILGLDLGTNS IGWAVVERENIDFSLIDKGVRIFSEGVKSEKGIESSRAAERTGYRSARKIK YRRKLRKYETLKVLSLNRMCPLS IEEVEEWKKSGFKDYPLNPEFLKWLSTDEESNVNPYFFRDR ASKHKVSLFELGRAFYHIAQRRGFLSNRLDQSAEGILEEHCPKIEAIVEDLI S IDEI STNITDY FFETGILDSNEKNGYAKDLDEGDKKLVSLYKSLLAILKKNESDFENCKSEI IERLNKKDVLGKV KGKIKDI SQAMLDGNYKTLGQYFYSLYSKEKIRNQYTSREEHYLSEFITICKVQGIDQINEEEK INEKKFDGLAKDLYKAIFFQRPLKSQKGLIGKCSFEKSKSRCAI SHPDFEEYRMWTYLNTIKIG TQSDKKLRFLTQDEKLKLVPKFYRKNDFNFDVLAKELIEKGSSFGFYKSSKKNDFFYWFNYKPT DTVAACQVAASLKNAIGEDWKTKSFKYQTINSNKEQVSRTVDYKDLWHLLTVATSDVYLYEFAI DKLGLDEKNAKAFSKTKLKKDFASLSLSAINKILPYLKEGLLYSHAVFVANIENIVDENIWKDE KQRDYIKTQI SEI IENYTLEKSRFEI INGLLKEYKSENEDGKRVYYSKEAEQSFENDLKKKLVL FYKSNEIENKEQQETIFNELLPIFIQQLKDYEFIKIQRLDQKVLIFLKGKNETGQIFCTEEKGT AEEKEKKIKNRLKKLYHPSDIEKFKKKI IKDEFGNEKIVLGSPLTPS IKNPMAMRALHQLRKVL NALILEGQIDEKTI IHIEMARELNDANKRKGIQDYQNDNKKFREDAIKEIKKLYFEDCKKEVEP TEDDILRYQLWMEQNRSEIYEEGKNI S ICDI IGSNPAYDIEHTIPRSRSQDNSQMNKTLCSQRF NREVKKQSMPIELNNHLEILPRIAHWKEEADNLTREIEI I SRS IKAAATKEIKDKKIRRRHYLT LKRDYLQGKYDRFIWEEPKVGFKNSQIPDTGI ITKYAQAYLKSYFKKVESVKGGMVAEFRKIWG IQESFIDENGMKHYKVKDRSKHTHHTIDAITIACMTKEKYDVLAHAWTLEDQQNKKEARS I IEA SKPWKTFKEDLLKIEEEILVSHYTPDNVKKQAKKIVRVRGKKQFVAEVERDVNGKAVPKKAASG KTIYKLDGEGKKLPRLQQGDTIRGSLHQDS IYGAIKNPLNTDEIKYVIRKDLES IKGSDVES IV DEVVKEKIKEAIANKVLLLSSNAQQKNKLVGTVWMNEEKRIAINKVRIYANSVKNPLHIKEHSL LSKSKHVHKQKVYGQNDENYAMAIYELDGKRDFELI IFNLAKLIKQGQGFYPLHKKKEIKGKI VFVPIEKRNKRDVVLKRGQQVVFYDKEVENPKDI SEIVDFKGRIYI IEGLS IQRIVRPSGKVDE YGVIMLRYFKEARKADDIKQDNFKPDGVFKLGENKPTRKMNHQFTAFVEGIDFKVLPSGKFEKI
SEQ ID NO: 332
MEFKKVLGLDIGTNS IGCALLSLPKS IQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLPQV ITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETI STEGKFSFRI S DYVPI SDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWVVYYLRKKALI KPTTKEELIRI IYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYETKFVS ITKV KEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEKGKFKQNKPDL PKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRYKKELEFIWTKQC QLNPELNNL INKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHI I SEDI IYYQRDLKSQKSL I SECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIH IKVIRKESEVNGKKKI IDETQLY INENIKEKLFELFNSKDSLSEKDILELI SLNI INSGIKI SKKEEETTHRINLFANRKELKGNET KSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTEKS ILSSLGWKNRNGKWEKSK NYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLVVMRDGKYWQHPDQIAKDQENTSLMLF DKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIEHNPYKLELVSDQDLEKQVLKSFLE KKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDELGEYIRKKLPNNSLRNPIVEQVIRETI FIVRDVWKSFGI IDEIHIELGRELKNNSEERKKTSESQEKNFQEKERARKLLKELLNSSNFEHY DENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSGLTDEELNKKLKDEKIPTEIEVKKYILWLTQ KCRSPYTGKI IPLSKLFDSNVYEIEHI IPRSKMKNDSTNNLVICELGVNKAKGDRLAANFI SES NGKCKFGEVEYTLLKYGDYLQYCKDTFKYQKAKYKNLLATEPPEDFIERQINDTRYIGRKLAEL LTPVVKDSKNI IFTIGS ITSELKITWGLNGVWKDILRPRFKRLES I INKKLIFQDEDDPNKYHF DLS INPQLDKEGLKRLDHRHHALDATI IAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIR DFKLPWENFTSEVKSKLLSCVVSYKESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAV RRSMFKEPIGTVWIKKIKEVSLKEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQEL GLSSSMRKQDDEKLNKFINEAKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPL NKKEYIEKLSLQKMFNDLPNFILEKS ILDNYPEILKELESDNKYI IEPHKKNNPVNRLLLEHIL EYHNNPKEAFSTEGLEKLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMY ENNQTKDREFLKPNPS I SVLKAIEHKNKIDFFAPNRLGFSRI ILSPGDLVYVPTNDQYVLIKDN SSNETI INWDDNEFI SNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNI SEYSVD DPPIRIKDVCIKIRVDRLGNVRPL
SEQ ID NO: 333
MKHILGLDLGTNS IGWALIERNIEEKYGKI IGMGSRIVPMGAELSKFEQGQAQTKNADRRTNRG ARRLNKRYKQRRNKLIYILQKLDMLPSQIKLKEDFSDPNKIDKITILPI SKKQEQLTAFDLVSL RVKALTEKVGLEDLGKI IYKYNQLRGYAGGSLEPEKEDIFDEEQSKDKKNKSFIAFSKIVFLGE PQEEIFKNKKLNRRAI IVETEEGNFEGSTFLENIKVGDSLELLINISASKSGDTITIKLPNKTN WRKKME IENQLKEKSKEMGREFYI SEFLLELLKENRWAKIRNNTILRARYESEFEAIWNEQVK HYPFLENLDKKTLIEIVSFIFPGEKESQKKYRELGLEKGLKYI IKNQVVFYQRELKDQSHLI SD CRYEPNEKAIAKSHPVFQEYKVWEQINKLIVNTKIEAGTNRKGEKKYKYIDRPIPTALKEWIFE ELQNKKEITFSAIFKKLKAEFDLREGIDFLNGMSPKDKLKGNETKLQLQKSLGELWDVLGLDSI NRQIELW ILYNEKGNEYDLTSDRTSKVLEFINKYGN IVDDNAEETAIRI SKIKFARAYSSLS LKAVERILPLVRAGKYFNNDFSQQLQSKILKLLNENVEDPFAKAAQTYLDNNQSVLSEGGVGNS IATILVYDKHTAKEYSHDELYKSYKEINLLKQGDLRNPLVEQI INEALVLIRDIWKNYGIKPNE IRVELARDLKNSAKERATIHKRNKDNQTINNKIKETLVKNKKELSLANIEKVKLWEAQRHLSPY TGQPIPLSDLFDKEKYDVDHI IPI SRYFDDSFTNKVI SEKSVNQEKANRTAMEYFEVGSLKYS I FTKEQFIAHVNEYFSGVKRKNLLATS IPEDPVQRQIKDTQYIAIRVKEELNKIVGNENVKTTTG SITDYLRNHWGLTDKFKLLLKERYEALLESEKFLEAEYDNYKKDFDSRKKEYEEKEVLFEEQEL TREEFIKEYKENYIRYKKNKLI IKGWSKRIDHRHHAIDALIVACTEPAHIKRLNDLNKVLQDWL VEHKSEFMPNFEGSNSELLEEILSLPENERTEIFTQIEKFRAIEMPWKGFPEQVEQKLKEI I I S HKPKDKLLLQYNKAGDRQIKLRGQLHEGTLYGI SQGKEAYRIPLTKFGGSKFATEK IQKIVSP FLSGFIANHLKEYNNKKEEAFSAEGIMDLNNKLAQYRNEKGELKPHTPI STVKIYYKDPSKNKK KKDEEDLSLQKLDREKAFNEKLYVKTGDNYLFAVLEGEIKTKKTSQIKRLYDI I SFFDATNFLK EEFRNAPDKKTFDKDLLFRQYFEERNKAKLLFTLKQGDFVYLPNENEEVILDKESPLYNQYWGD LKERGK IYVVQKFSKKQIYFIKHTIADI IKKDVEFGSQNCYETVEGRS IKENCFKLEIDRLGN IVKVIKR
SEQ ID NO: 334
MHVEIDFPHFSRGDSHLAMNKNEILRGSSVLYRLGLDLGSNSLGWFVTHLEKRGDRHEPVALGP GGVRIFPDGRDPQSGTSNAVDRRMARGARKRRDRFVERRKELIAALIKYNLLPDDARERRALEV LDPYALRKTALTDTLPAHHVGRALFHLNQRRGFQSNRKTDSKQSEDGAIKQAASRLATDKGNET LGVFFADMHLRKSYEDRQTAIRAELVRLGKDHLTGNARKKIWAKVRKRLFGDEVLPRADAPHGV RARATITGTKASYDYYPTRDMLRDEFNAIWAGQSAHHATITDEARTEIEHI IFYQRPLKPAIVG KCTLDPATRPFKEDPEGYRAPWSHPLAQRFRILSEARNLEIRDTGKGSRRLTKEQSDLVVAALL ANREVKFDKLRTLLKLPAEARFNLESDRRAALDGDQTAARLSDKKGFNKAWRGFPPERQIAIVA RLEETEDENELIAWLEKECALDGAAAARVANTTLPDGHCRLGLRAIKKIVPIMQDGLDEDGVAG AGYHIAAKRAGYDHAKLPTGEQLGRLPYYGQWLQDAVVGSGDARDQKEKQYGQFPNPTVHIGLG QLRRVVNDLIDKYGPPTEI S IEFTRALKLSEQQKAERQREQRRNQDKNKARAEELAKFGRPANP RNLLKMRLWEELAHDPLDRKCVYTGEQI S IERLLSDEVDIDHILPVAMTLDDSPANKI ICMRYA NRHKRKQTPSEAFGSSPTLQGHRYNWDDIAARATGLPRNKRWRFDANAREEFDKRGGFLARQLN ETGWLARLAKQYLGAVTDPNQIWVVPGRLTSMLRGKWGLNGLLPSDNYAGVQDKAEEFLASTDD MEFSGVKNRADHRHHAIDGLVTALTDRSLLWKMANAYDEEHEKFVIEPPWPTMRDDLKAALEKM VVSHKPDHGIEGKLHEDSAYGFVKPLDATGLKEEEAGNLVYRKAIESLNENEVDRIRDIQLRTI VRDHVNVEKTKGVALADALRQLQAPSDDYPQFKHGLRHVRILKKEKGDYLVPIANRASGVAYKA YSAGENFCVEVFETAGGKWDGEAVRRFDANKKNAGPKIAHAPQWRDANEGAKLVMRIHKGDLIR LDHEGRARIMVVHRLDAAAGRFKLADHNETGNLDKRHATNNDIDPFRWLMASYNTLKKLAAVPV RVDELGRVWRVMPN
SEQ ID NO: 335
METTLGIDLGTNS IGLALVDQEEHQILYSGVRIFPEGINKDTIGLGEKEESRNATRRAKRQMRR QYFRKKLRKAKLLELLIAYDMCPLKPEDVRRWKNWDKQQKSTVRQFPDTPAFREWLKQNPYELR KQAVTEDVTRPELGRILYQMIQRRGFLSSRKGKEEGKIFTGKDRMVGIDETRKNLQKQTLGAYL YDIAPKNGEKYRFRTERVRARYTLRDMYIREFEI IWQRQAGHLGLAHEQATRKKNIFLEGSATN VRNSKLITHLQAKYGRGHVLIEDTRITVTFQLPLKEVLGGKIEIEEEQLKFKSNESVLFWQRPL RSQKSLLSKCVFEGRNFYDPVHQKWI IAGPTPAPLSHPEFEEFRAYQFIN I IYGKNEHLTAIQ REAVFELMCTESKDFNFEKIPKHLKLFEKFNFDDTTKVPACTTI SQLRKLFPHPVWEEKREEIW HCFYFYDDNTLLFEKLQKDYALQTNDLEKIKKIRLSESYGNVSLKAIRRINPYLKKGYAYSTAV LLGGIRNSFGKRFEYFKEYEPEIEKAVCRILKEKNAEGEVIRKIKDYLVHNRFGFAKNDRAFQK LYHHSQAITTQAQKERLPETGNLRNPIVQQGLNELRRTVNKLLATCREKYGPSFKFDHIHVEMG RELRSSKTEREKQSRQIRENEKKNEAAKVKLAEYGLKAYRDNIQKYLLYKEIEEKGGTVCCPYT GKTLNI SHTLGSDNSVQIEHI IPYS I SLDDSLANKTLCDATFNREKGELTPYDFYQKDPSPEKW GASSWEEIEDRAFRLLPYAKAQRFIRRKPQESNEFI SRQLNDTRYI SKKAVEYLSAICSDVKAF PGQLTAELRHLWGLNNILQSAPDITFPLPVSATENHREYYVITNEQNEVIRLFPKQGETPRTEK GELLLTGEVERKVFRCKGMQEFQTDVSDGKYWRRIKLSSSVTWSPLFAPKPI SADGQIVLKGRI EKGVFVCNQLKQKLKTGLPDGSYWI SLPVI SQTFKEGESVNNSKLTSQQVQLFGRVREGIFRCH NYQCPASGADGNFWCTLDTDTAQPAFTPIKNAPPGVGGGQI ILTGDVDDKGIFHADDDLHYELP ASLPKGKYYGIFTVESCDPTLIPIELSAPKTSKGENLIEGNIWVDEHTGEVRFDPKKNREDQRH HAIDAIVIALSSQSLFQRLSTYNARRENKKRGLDSTEHFPSPWPGFAQDVRQSVVPLLVSYKQN PKTLCKI SKTLYKDGKKIHSCGNAVRGQLHKETVYGQRTAPGATEKSYHIRKDIRELKTSKHIG KVVDITIRQMLLKHLQENYHIDITQEFNIPSNAFFKEGVYRIFLPNKHGEPVPIKKIRMKEELG NAERLKD INQYVNPRNNHHVMIYQDADGNLKEEIVSFWSVIERQNQGQPIYQLPREGR IVS I LQINDTFLIGLKEEEPEVYRNDLSTLSKHLYRVQKLSGMYYTFRHHLASTLNNEREEFRIQSLE AWKRANPVKVQIDEIGRITFLNGPLC
SEQ ID NO: 336
MESSQILSPIGIDLGGKFTGVCLSHLEAFAELPNHANTKYSVILIDHNNFQLSQAQRRATRHRV RNKKRNQFVKRVALQLFQHILSRDLNAKEETALCHYLNNRGYTYVDTDLDEYIKDETTINLLKE LLPSESEHNFIDWFLQKMQSSEFRKILVSKVEEKKDDKELKNAVKNIKNFITGFEKNSVEGHRH RKVYFENIKSDITKDNQLDS IKKKIPSVCLSNLLGHLSNLQWKNLHRYLAKNPKQFDEQTFGNE FLRMLKNFRHLKGSQESLAVRNLIQQLEQSQDYI S ILEKTPPEITIPPYEARTNTGMEKDQSLL LNPEKLNNLYPNWRNLIPGI IDAHPFLEKDLEHTKLRDRKRI I SPSKQDEKRDSYILQRYLDLN KKIDKFKIKKQLSFLGQGKQLPANLIETQKEMETHFNSSLVSVLIQIASAYNKEREDAAQGIWF DNAFSLCELSNINPPRKQKILPLLVGAILSEDFINNKDKWAKFKIFWNTHKIGRTSLKSKCKEI EEARKNSGNAFKIDYEEALNHPEHSNNKALIKI IQTIPDI IQAIQSHLGHNDSQALIYHNPFSL SQLYTILETKRDGFHKNCVAVTCENYWRSQKTEIDPEI SYASRLPADSVRPFDGVLARMMQRLA YEIAMAKWEQIKHIPDNSSLLIPIYLEQNRFEFEESFKKIKGSSSDKTLEQAIEKQNIQWEEKF QRI INASM ICPYKGAS IGGQGEIDHIYPRSLSKKHFGVIFNSEVNLIYCSSQGNREKKEEHYL LEHLSPLYLKHQFGTDNVSDIKNFI SQNVA IKKYI SFHLLTPEQQKAARHALFLDYDDEAFKT ITKFLMSQQKARVNGTQKFLGKQIMEFLSTLADSKQLQLEFS IKQITAEEVHDHRELLSKQEPK LVKSRQQSFPSHAIDATLTMS IGLKEFPQFSQELDNSWFINHLMPDEVHLNPVRSKEKYNKP I SSTPLFKDSLYAERFIPVWVKGETFAIGFSEKDLFEIKPSNKEKLFTLLKTYSTKNPGESLQEL QAKSKAKWLYFPINKTLALEFLHHYFHKEIVTPDDTTVCHFINSLRYYTKKES ITVKILKEPMP VLSVKFESSKKNVLGSFKHTIALPATKDWERLFNHPNFLALKANPAPNPKEFNEFIRKYFLSDN NPNSDIPNNGHNIKPQKHKAVRKVFSLPVIPGNAGTMMRIRRKDNKGQPLYQLQTIDDTPSMGI QINEDRLVKQEVLMDAYKTRNLSTIDGINNSEGQAYATFDNWLTLPVSTFKPEI IKLEMKPHSK TRRYIRITQSLADFIKTIDEALMIKPSDS IDDPLNMPNEIVCKNKLFGNELKPRDGKMKIVSTG KIVTYEFESDSTPQWIQTLYVTQLKKQP
SEQ ID NO: 337
MKKIVGLDLGTNS IGWALINAYINKEHLYGIEACGSRI IPMDAAILGNFDKGNS I SQTADRTSY RGIRRLRERHLLRRERLHRILDLLGFLPKHYSDSLNRYGKFLNDIECKLPWVKDETGSYKFIFQ ESFKEMLANFTEHHPILIANNKKVPYDWTIYYLRKKALTQKI SKEELAWILLNFNQKRGYYQLR GEEEETPNKLVEYYSLKVEKVEDSGERKGKDTWYNVHLENGMIYRRTS IPLDWEGKTKEFIVT TDLEADGSPKKDKEG IKRSFRAPKDDDWTLIKKKTEADIDKIKMTVGAYIYDTLLQKPDQKIR GKLVRTIERKYYKNELYQILKTQSEFHEELRDKQLYIACLNELYPNNEPRRNS I STRDFCHLFI EDI IFYQRPLKSKKSLIDNCPYEENRYIDKESGEIKHAS IKCIAKSHPLYQEFRLWQFIVNLRI YRKETDVDVTQELLPTEADYVTLFEWLNEKKEIDQKAFFKYPPFGFKKTTSNYRWNYVEDKPYP CNETHAQI IARLGKAHIPKAFLSKEKEETLWHILYS IEDKQEIEKALHSFANKNNLSEEFIEQF KNFPPFKKEYGSYSAKAIKKLLPLMRMGKYWS IE IDNGTRIRINKI IDGEYDE IRERVRQKA INLTDITHFRALPLWLACYLVYDRHSEVKDIVKWKTPKDIDLYLKSFKQHSLRNPIVEQVITET LRTVRDIWQQVGHIDEIHIELGREMKNPADKRARMSQQMIKNENTNLRIKALLTEFLNPEFGIE NVRPYSPSQQDLLRIYEEGVLNS ILELPEDIGI ILGKFNQTDTLKRPTRSEILRYKLWLEQKYR SPYTGEMIPLSKLFTPAYEIEHI IPQSRYFDDSLSNKVICESEINKLKDRSLGYEFIKNHHGEK VELAFDKPVEVLSVEAYEKLVHESYSHNRSKMKKLLMEDIPDQFIERQLNDSRYI SKVVKSLLS IVREENEQEAI SKNVIPCTGGITDRLKKDWGINDVWNKIVLPRFIRLNELTESTRFTS INTNN TMIPSMPLELQKGFNKKRIDHRHHAMDAI I IACANR IVNYLNNVSASKNTKITRRDLQTLLCH KDKTDNNGNYKWVIDKPWETFTQDTLTALQKITVSFKQNLRVINKTTNHYQHYENGKKIVSNQS KGDSWAIRKSMHKETVHGEVNLRMIKTVSFNEALKKPQAIVEMDLKKKILAMLELGYDTKRIKN YFEENKDTWQDINPSKIKVYYFTKETKDRYFAVRKPIDTSFDKKKIKES ITDTGIQQIMLRHLE TKDNDPTLAFSPDGIDEMNRNILILNKGKKHQPIYKVRVYEKAEKFTVGQKGNKRTKFVEAAKG TNLFFAIYETEEIDKDTKKVIRKRSYSTIPLNVVIERQKQGLSSAPEDENGNLPKYILSPNDLV YVPTQEEINKGEVVMPIDRDRIYKMVDSSGITANFIPASTANLIFALPKATAEIYCNGENCIQN EYGIGSPQSKNQKAITGEMVKEICFPIKVDRLGNI IQVGSCILTN
SEQ ID NO: 338
MSRSLTFSFDIGYAS IGWAVIASASHDDADPSVCGCGTVLFPKDDCQAFKRREYRRLRR IRSR RVRIERIGRLLVQAQI ITPEMKETSGHPAPFYLASEALKGHRTLAPIELWHVLRWYAHNRGYDN NASWSNSLSEDGGNGEDTERVKHAQDLMDKHGTATMAETICRELKLEEGKADAPMEVSTPAYKN LNTAFPRLIVEKEVRRILELSAPLIPGLTAEI IELIAQHHPLTTEQRGVLLQHGIKLARRYRGS LLFGQLIPRFDNRI I SRCPVTWAQVYEAELKKGNSEQSARERAEKLSKVPTANCPEFYEYRMAR ILC IRADGEPLSAEIRRELMNQARQEGKLTKASLEKAI SSRLGKETETNVSNYFTLHPDSEEA LYLNPAVEVLQRSGIGQILSPSVYRIAANRLRRGKSVTPNYLLNLLKSRGESGEALEKKIEKES KKKEADYADTPLKPKYATGRAPYARTVLKKVVEEILDGEDPTRPARGEAHPDGELKAHDGCLYC LLDTDSSVNQHQKERRLDTMTNNHLVRHRMLILDRLLKDLIQDFADGQKDRI SRVCVEVGKELT TFSAMDSKKIQRELTLRQKSHTDAVNRLKRKLPGKALSANLIRKCRIAMDMNWTCPFTGATYGD HELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGYDFVEQEQENPVPDKPNLHICSL NNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQSQNHEAMKEIGMTEGMMTQSSHLM KLACKS IKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFKELCPEAADPDSGKILKENLRSLTHLH HALDACVLGLIPYI IPAHHNGLLRRVLAMRRIPEKLIPQVRPVANQRHYVLNDDGRMMLRDLSA SLKENIREQLMEQRVIQHVPADMGGALLKETMQRVLSVDGSGEDAMVSLSKKKDGKKEKNQVKA SKLVGVFPEGPSKLKALKAAIEIDGNYGVALDPKPVVIRHIKVFKRIMALKEQNGGKPVRILKK GMLIHLTSSKDPKHAGVWRIES IQDSKGGVKLDLQRAHCAVPKNKTHECNWREVDLI SLLKKYQ MKRYPTSYTGTPR
SEQ ID NO: 339
MTQKVLGLDLGTNS IGSAVRNLDLSDDLQWQLEFFSSDIFRSSVNKESNGREYSLAAQRSAHRR SRGLNEVRRRRLWATLNLLIKHGFCPMSSESLMRWCTYDKRKGLFREYPIDDKDFNAWILLDFN GDGRPDYSSPYQLRRELVTRQFDFEQPIERYKLGRALYHIAQHRGFKSSKGETLSQQETNSKPS STDEIPDVAGAMKASEEKLSKGLSTYMKEHNLLTVGAAFAQLEDEGVRVRNNNDYRAIRSQFQH EIETIFKFQQGLSVESELYERLI SEKKNVGTIFYKRPLRSQRGNVGKCTLERSKPRCAIGHPLF EKFRAWTLINNIKVRMSVDTLDEQLPMKLRLDLYNECFLAFVRTEFKFEDIRKYLEKRLGIHFS YNDKTINYKDSTSVAGCPITARFRKMLGEEWESFRVEGQKERQAHSKNNI SFHRVSYS IEDIWH FCYDAEEPEAVLAFAQETLRLERKKAEELVRIWSAMPQGYAMLSQKAIRNINKILMLGLKYSDA VILAKVPELVDVSDEELLS IAKDYYLVEAQVNYDKRINS IVNGLIAKYKSVSEEYRFADHNYEY LLDESDEKDI IRQIENSLGARRWSLMDANEQTDILQKVRDRYQDFFRSHERKFVESPKLGESFE NYLTKKFPMVEREQWKKLYHPSQITIYRPVSVGKDRSVLRLGNPDIGAIKNPTVLRVLNTLRRR VNQLLDDGVI SPDETRVVVETARELNDANRKWALDTYNRIRHDENEKIKKILEEFYPKRDGI ST DDIDKARYVIDQREVDYFTGSKTYNKDIKKYKFWLEQGGQCMYTGRTINLSNLFDPNAFDIEHT IPESLSFDSSDMNLTLCDAHYNRFIKKNHIPTDMPNYDKAITIDGKEYPAITSQLQRWVERVER LNRNVEYWKGQARRAQNKDRKDQCMREMHLWKMELEYWKKKLERFTVTEVTDGFKNSQLVDTRV ITRHAVLYLKS IFPHVDVQRGDVTAKFRKILGIQSVDEKKDRSLHSHHAIDATTLTI IPVSAKR DRMLELFAKIEEINKMLSFSGSEDRTGLIQELEGLKNKLQMEVKVCRIGHNVSEIGTFINDNII VNHHIKNQALTPVRRRLRKKGYIVGGVDNPRWQTGDALRGEIHKASYYGAITQFAKDDEGKVLM KEGRPQVNPTIKFVIRRELKYKKSAADSGFASWDDLGKAIVDKELFALMKGQFPAETSFKDACE QGIYMIKKGKNGMPDIKLHHIRHVRCEAPQSGLKIKEQTYKSEKEYKRYFYAAVGDLYAMCCYT NGKIREFRIYSLYDVSCHRKSDIEDIPEFITDKKGNRLMLDYKLRTGDMILLYKDNPAELYDLD NVNLSRRLYKINRFESQSNLVLMTHHLSTSKERGRSLGKTVDYQNLPES IRSSVKSLNFLIMGE NRDFVIKNGKI IFNHR
SEQ ID NO: 340
MLVSPI SVDLGGKNTGFFSFTDSLDNSQSGTVIYDESFVLSQVGRRSKRHSKRNNLRNKLVKRL FLLILQEHHGLS IDVLPDEIRGLFNKRGYTYAGFELDEKKKDALESDTLKEFLSEKLQS IDRDS DVEDFLNQIASNAESFKDYKKGFEAVFASATHSPNKKLELKDELKSEYGENAKELLAGLRVTKE ILDEFDKQENQGNLPRAKYFEELGEYIATNEKVKSFFDSNSLKLTDMTKLIG I SNYQLKELRR YFNDKEMEKGDIWIPNKLHKITERFVRSWHPKNDADRQRRAELMKDLKSKEIMELLTTTEPVMT IPPYDDMNNRGAVKCQTLRLNEEYLDKHLPNWRDIAKRLNHGKFNDDLADSTVKGYSEDSTLLH RLLDTSKEIDIYELRGKKPNELLVKTLGQSDANRLYGFAQNYYELIRQKVRAGIWVPVKNKDDS LNLEDNSNMLKRCNHNPPHKKNQIHNLVAGILGVKLDEAKFAEFEKELWSAKVGNKKLSAYCKN IEELRKTHGNTFKIDIEELRKKDPAELSKEEKAKLRLTDDVILNEWSQKIANFFDIDDKHRQRF NNLFSMAQLHTVIDTPRSGFSSTCKRCTAENRFRSETAFYNDETGEFHKKATATCQRLPADTQR PFSGKIERYIDKLGYELAKIKAKELEGMEAKEIKVPI ILEQNAFEYEESLRKSKTGSNDRVINS KKDRDGKKLAKAKENAEDRLKDKDKRIKAFSSGICPYCGDTIGDDGEIDHILPRSHTLKIYGTV FNPEGNLIYVHQKCNQAKADS IYKLSDIKAGVSAQWIEEQVANIKGYKTFSVLSAEQQKAFRYA LFLQNDNEAYKKVVDWLRTDQSARVNGTQKYLAKKIQEKLTKMLPNKHLSFEFILADATEVSEL RRQYARQNPLLAKAEKQAPSSHAIDAVMAFVARYQKVFKDGTPPNADEVAKLAMLDSWNPASNE PLTKGLSTNQKIEKMIKSGDYGQKNMREVFGKS IFGENAIGERYKPIVVQEGGYYIGYPATVKK GYELKNCKVVTSKNDIAKLEKI IKNQDLI SLKENQYIKIFS INKQTI SELSNRYFNMNYKNLVE RDKEIVGLLEFIVENCRYYTKKVDVKFAPKYIHETKYPFYDDWRRFDEAWRYLQENQNKTSSKD RFVIDKSSLNEYYQPDKNEYKLDVDTQPIWDDFCRWYFLDRYKTANDKKS IRIKARKTFSLLAE SGVQGKVFRAKRKIPTGYAYQALPMDNNVIAGDYANILLEANSKTLSLVPKSGI S IEKQLDKKL DVIKKTDVRGLAIDNNSFFNADFDTHGIRLIVENTSVKVGNFPI SAIDKSAKRMIFRALFEKEK GKRKKKTTI SFKESGPVQDYLKVFLKKIVKIQLRTDGS I S IVVRKNAADFTLSFRSEHIQKLL K
SEQ ID NO: 341 MAYRLGLDIGITSVGWAVVALEKDESGLKPVRIQDLGVRIFDKAEDSKTGASLALPRREARSAR RRTRRRRHRLWRVKRLLEQHGILSMEQIEALYAQRTSSPDVYALRVAGLDRCLIAEEIARVLIH IAHRRGFQSNRKSEIKDSDAGKLLKAVQENENLMQSKGYRTVAEMLVSEATKTDAEGKLVHGKK HGYVSNVRNKAGEYRHTVSRQAIVDEVRKIFAAQRALGNDVMSEELEDSYLKILCSQRNFDDGP GGDSPYGHGSVSPDGVRQS IYERMVGSCTFETGEKRAPRSSYSFERFQLLTKVVNLRIYRQQED GGRYPCELTQTERARVIDCAYEQTKITYGKLRKLLDMKDTESFAGLTYGLNRSRNKTEDTVFVE MKFYHEVRKALQRAGVFIQDLS IETLDQIGWILSVWKSDDNRRKKLSTLGLSDNVIEELLPLNG SKFGHLSLKAIRKILPFLEDGYSYDVACELAGYQFQGKTEYVKQRLLPPLGEGEVTNPVVRRAL SQAIKVVNAVIRKHGSPES IHIELARELSKNLDERRKIEKAQKENQKNNEQIKDEIREILGSAH VTGRDIVKYKLFKQQQEFCMYSGEKLDVTRLFEPGYAEVDHI IPYGI SFDDSYDNKVLVKTEQN RQKGNRTPLEYLRDKPEQKAKFIALVES IPLSQKKKNHLLMDKRAIDLEQEGFRERNLSDTRYI TRALMNHIQAWLLFDETASTRSKRVVCVNGAVTAYMRARWGLTKDRDAGDKHHAADAVVVACIG DSLIQRVTKYDKFKRNALADRNRYVQQVSKSEGITQYVDKETGEVFTWESFDERKFLPNEPLEP WPFFRDELLARLSDDPSKNIRAIGLLTYSETEQIDPIFVSRMPTRKVTGAAHKETIRSPRIVKV DDNKGTEIQVVVSKVALTELKLTKDGEIKDYFRPEDDPRLYNTLRERLVQFGGDAKAAFKEPVY KI SKDGSVRTPVRKVKIQEKLTLGVPVHGGRGIAENGGMVRIDVFAKGGKYYFVPIYVADVLKR ELPNRLATAHKPYSEWRVVDDSYQFKFSLYPNDAVMIKPSREVDITYKDRKEPVGCRIMYFVSA NIASAS I SLRTHDNSGELEGLGIQGLEVFEKYVVGPLGDTHPVYKERRMPFRVERKMN
SEQ ID NO: 342
MPVLSPLSPNAAQGRRRWSLALDIGEGS IGWAVAEVDAEGRVLQLTGTGVTLFPSAWSNENGTY VAHGAADRAVRGQQQRHDSRRRRLAGLARLCAPVLERSPEDLKDLTRTPPKADPRAIFFLRADA ARRPLDGPELFRVLHHMAAHRGIRLAELQEVDPPPESDADDAAPAATEDEDGTRRAAADERAFR RLMAEHMHRHGTQPTCGEIMAGRLRETPAGAQPVTRARDGLRVGGGVAVPTRALIEQEFDAIRA IQAPRHPDLPWDSLRRLVLDQAPIAVPPATPCLFLEELRRRGETFQGRTITREAIDRGLTVDPL IQALRIRETVGNLRLHERITEPDGRQRYVPRAMPELGLSHGELTAPERDTLVRALMHDPDGLAA KDGRIPYTRLRKLIGYDNSPVCFAQERDTSGGGITVNPTDPLMARWIDGWVDLPLKARSLYVRD VVARGADSAALARLLAEGAHGVPPVAAAAVPAATAAILESDIMQPGRYSVCPWAAEAILDAWAN APTEGFYDVTRGLFGFAPGEIVLEDLRRARGALLAHLPRTMAAARTPNRAAQQRGPLPAYESVI PSQLITSLRRAHKGRAADWSAADPEERNPFLRTWTGNAATDHILNQVRKTANEVITKYGNRRGW DPLPSRITVELAREAKHGVIRRNEIAKENRENEGRRKKESAALDTFCQDNTVSWQAGGLPKERA ALRLRLAQRQEFFCPYCAERPKLRATDLFSPAETEIDHVIERRMGGDGPDNLVLAHKDCNNAKG KKTPHEHAGDLLDSPALAALWQGWRKENADRLKGKGHKARTPREDKDFMDRVGWRFEEDARAKA EENQERRGRRMLHDTARATRLARLYLAAAVMPEDPAEIGAPPVETPPSPEDPTGYTAIYRTI SR VQPVNGSVTHMLRQRLLQRDKNRDYQTHHAEDACLLLLAGPAVVQAFNTEAAQHGADAPDDRPV DLMPTSDAYHQQRRARALGRVPLATVDAALADIVMPESDRQDPETGRVHWRLTRAGRGLKRRID DLTRNCVILSRPRRPSETGTPGALHNATHYGRREITVDGRTDTVVTQRMNARDLVALLDNAKIV PAARLDAAAPGDTILKEICTEIADRHDRVVDPEGTHARRWI SARLAALVPAHAEAVARDIAELA DLDALADADRTPEQEARRSALRQSPYLGRAI SAKKADGRARAREQEILTRALLDPHWGPRGLRH LIMREARAPSLVRIRANKTDAFGRPVPDAAVWVKTDGNAVSQLWRLTSVVTDDGRRIPLPKPIE KRIEI SNLEYARLNGLDEGAGVTGNNAPPRPLRQDIDRLTPLWRDHGTAPGGYLGTAVGELEDK ARSALRGKAMRQTLTDAGITAEAGWRLDSEGAVCDLEVAKGDTVKKDGKTYKVGVITQGIFGMP VDAAGSAPRTPEDCEKFEEQYGIKPWKAKGIPLA
SEQ ID NO: 343
MNYTEKEKLFMKYILALDIGIASVGWAILDKESETVIEAGSNIFPEASAADNQLRRDMRGAKRN NRRLKTRINDFIKLWENNNLSIPQFKSTEIVGLKVRAITEEITLDELYLILYSYLKHRGISYLE DALDDTVSGSSAYANGLKLNAKELETHYPCEIQQERLNTIGKYRGQSQI INENGEVLDLSNVFT IGAYRKEIQRVFEIQKKYHPELTDEFCDGYMLIFNRKRKYYEGPGNEKSRTDYGRFTTKLDANG NYITEDNIFEKLIGKCSVYPDELRAAAASYTAQEYNVLNDLNNLTINGRKLEENEKHEIVERIK SSNTINMRKI I SDCMGENIDDFAGARIDKSGKEIFHKFEVYNKMRKALLEIGIDI SNYSREELD EIGYIMTINTDKEAMMEAFQKSWIDLSDDVKQCLINMRKTNGALFNKWQSFSLKIMNELIPEMY AQPKEQMTLLTEMGVTKGTQEEFAGLKYIPVDVVSEDIFNPVVRRSVRI SFKILNAVLKKYKAL DTIVIEMPRDRNSEEQKKRINDSQKLNEKEMEYIEKKLAVTYGIKLSPSDFSSQKQLSLKLKLW NEQDGICLYSGKTIDPNDI INNPQLFEIDHI IPRS I SFDDARSNKVLVYRSENQKKGNQTPYYY LTHSHSEWSFEQYKATVMNLSKKKEYAI SRKKIQNLLYSEDITKMDVLKGFINR INDTSYASR LVLNTIQNFFMANEADTKVKVIKGSYTHQMRCNLKLDKNRDESYSHHAVDAMLIGYSELGYEAY HKLQGEFIDFETGEILRKDMWDENMSDEVYADYLYGKKWANIRNEVVKAEKNVKYWHYVMRKSN RGLCNQTIRGTREYDGKQYKINKLDIRTKEGIKVFAKLAFSKKDSDRERLLVYLNDRRTFDDLC KIYEDYSDAANPFVQYEKETGDI IRKYSKKHNGPRIDKLKYKDGEVGACIDI SHKYGFEKGSKK VILESLVPYRMDVYYKEENHSYYLVGVKQSDIKFEKGRNVIDEEAYARILVNEKMIQPGQSRAD LENLGFKFKLSFYKNDI IEYEKDGKIYTERLVSRTMPKQRNYIETKPIDKAKFEKQNLVGLGKT KFIKKYRYDILGNKYSCSEEKFTSFC
SEQ ID NO: 344
MLRLYCANNLVLNNVQNLWKYLLLLIFDKKI IFLFKIKVILIRRYMENNNKEKIVIGFDLGVAS VGWS IVNAETKEVIDLGVRLFSEPEKADYRRAKRTTRRLLRRKKFKREKFHKLILKNAEIFGLQ SRNEILNVYKDQSSKYRNILKLKINALKEEIKPSELVWILRDYLQNRGYFYKNEKLTDEFVSNS FPSKKLHEHYEKYGFFRGSVKLDNKLDNKKDKAKEKDEEEESDAKKESEELIFSNKQWINEIVK VFENQSYLTESFKEEYLKLFNYVRPFNKGPGSKNSRTAYGVFSTDIDPETNKFKDYSNIWDKTI GKCSLFEEEIRAPKNLPSALIFNLQNEICTIKNEFTEFKNWWLNAEQKSEILKFVFTELFNWKD KKYSDKKFNKNLQDKIKKYLLNFALENFNLNEEILKNRDLENDTVLGLKGVKYYEKSNATADAA LEFSSLKPLYVFIKFLKEKKLDLNYLLGLENTEILYFLDS IYLAI SYSSDLKERNEWFKKLLKE LYPKIKNNNLEI IENVEDIFEITDQEKFESFSKTHSLSREAFNHI IPLLLSNNEGKNYESLKHS NEELKKRTEKAELKAQQNQKYLKDNFLKEALVPLSVKTSVLQAIKIFNQI IKNFGKKYEI SQVV IEMARELTKPNLEKLLNNATNSNIKILKEKLDQTEKFDDFTKKKFIDKIENSVVFRNKLFLWFE QDRKDPYTQLDIKINEIEDETEIDHVIPYSKSADDSWFNKLLVKKSTNQLKKNKTVWEYYQNES DPEAKWNKFVAWAKRIYLVQKSDKESKDNSEKNS IFKNKKPNLKFK ITKKLFDPYKDLGFLAR NLNDTRYATKVFRDQLNNYSKHHSKDDENKLFKVVCMNGS ITSFLRKSMWRKNEEQVYRFNFWK KDRDQFFHHAVDAS I IAIFSLLTKTLYNKLRVYESYDVQRREDGVYLINKETGEVKKADKDYWK DQHNFLKIRENAIEIKNVLNNVDFQNQVRYSRKANTKLNTQLFNETLYGVKEFENNFYKLEKVN LFSRKDLRKFILEDLNEESEKNKKNENGSRKRILTEKYIVDEILQILENEEFKDSKSDINALNK YMDSLPSKFSEFFSQDFINKCKKENSLILTFDAIKHNDPKKVIKIKNLKFFREDATLKNKQAVH KDSKNQIKSFYESYKCVGFIWLKNKNDLEES IFVPINSRVIHFGDKDKDIFDFDSYNKEKLLNE INLKRPENKKFNS INEIEFVKFVKPGALLLNFENQQIYYI STLESSSLRAKIKLLNKMDKGKAV SMKKITNPDEYKI IEHVNPLGINLNWTKKLENNN
SEQ ID NO: 345
MLMSKHVLGLDLGVGS IGWCLIALDAQGDPAEILGMGSRVVPLNNATKAIEAFNAGAAFTASQE RTARRTMRRGFARYQLRRYRLRRELEKVGMLPDAALIQLPLLELWELRERAATAGRRLTLPELG RVLCHINQKRGYRHVKSDAAAIVGDEGEKKKDSNSAYLAGIRANDEKLQAEHKTVGQYFAEQLR QNQSESPTGGI SYRIKDQIFSRQCYIDEYDQIMAVQRVHYPDILTDEFIRMLRDEVIFMQRPLK SCKHLVSLCEFEKQERVMRVQQDDGKGGWQLVERRVKFGPKVAPKSSPLFQLCCIYEAVNNIRL TRPNGSPCDITPEERAKIVAHLQSSASLSFAALKKLLKEKALIADQLTSKSGLKGNSTRVALAS ALQPYPQYHHLLDMELETRMMTVQLTDEETGEVTEREVAVVTDSYVRKPLYRLWHILYS IEERE AMRRALITQLGMKEEDLDGGLLDQLYRLDFVKPGYGNKSAKFICKLLPQLQQGLGYSEACAAVG YRHSNSPTSEEITERTLLEKIPLLQRNELRQPLVEKILNQMINLVNALKAEYGIDEVRVELARE LKMSREERERMARNNKDREERNKGVAAKIRECGLYPTKPRIQKYMLWKEAGRQCLYCGRS IEEE QCLREGGMEVEHI IPKSVLYDDSYGNKTCACRRCNKEKGNRTALEYIRAKGREAEYMKRINDLL KEKKI SYSKHQRLRWLKEDIPSDFLERQLRLTQYI SRQAMAILQQGIRRVSASEGGVTARLRSL WGYGKILHTLNLDRYDSMGETERVSREGEATEELHITNWSKRMDHRHHAIDALVVACTRQSYIQ RLNRLSSEFGREDKKKEDQEAQEQQATETGRLSNLERWLTQRPHFSVRTVSDKVAEILI SYRPG QRVVTRGRNIYRKKMADGREVSCVQRGVLVPRGELMEASFYGKILSQGRVRIVKRYPLHDLKGE VVDPHLRELITTYNQELKSREKGAPIPPLCLDKDKKQEVRSVRCYAKTLSLDKAIPMCFDEKGE PTAFVKSASNHHLALYRTPKGKLVES IVTFWDAVDRARYGIPLVITHPREVMEQVLQRGDIPEQ VLSLLPPSDWVFVDSLQQDEMVVIGLSDEELQRALEAQNYRKI SEHLYRVQKMSSSYYVFRYHL ETSVADDKNTSGRIPKFHRVQSLKAYEERNIRKVRVDLLGRISLL
SEQ ID NO: 346
MSDLVLGLDIGIGSVGVGILNKVTGEI IHKNSRIFPAAQAENNLVRRTNRQGRRLARRKKHRRV RLNRLFEESGLITDFTKI S INLNPYQLRVKGLTDELSNEELFIALKNMVKHRGI SYLDDASDDG NSSVGDYAQIVKENSKQLETKTPGQIQLERYQTYGQLRGDFTVEKDGKKHRLINVFPTSAYRSE ALRILQTQQEFNPQITDEFINRYLEILTGKRKYYHGPGNEKSRTDYGRYRTSGETLDNIFGILI GKCTFYPDEFRAAKASYTAQEFNLLNDLNNLTVPTETKKLSKEQKNQI INYVKNEKAMGPAKLF KYIAKLLSCDVADIKGYRIDKSGKAEIHTFEAYRKMKTLETLDIEQMDRETLDKLAYVLTLNTE REGIQEALEHEFADGSFSQKQVDELVQFRKANSS IFGKGWHNFSVKLMMELIPELYETSEEQMT ILTRLGKQKTTSSSNKTKYIDEKLLTEEIYNPVVAKSVRQAIKIVNAAIKEYGDFDNIVIEMAR ETNEDDEKKAIQKIQKANKDEKDAAMLKAANQYNGKAELPHSVFHGHKQLATKIRLWHQQGERC LYTGKTI S IHDLINNSNQFEVDHILPLS ITFDDSLANKVLVYATANQEKGQRTPYQALDSMDDA WSFRELKAFVRESKTLSNKKKEYLLTEEDI SKFDVRKKFIERNLVDTRYASRVVLNALQEHFRA HKIDTKVSVVRGQFTSQLRRHWGIEKTRDTYHHHAVDALI IAASSQLNLWKKQKNTLVSYSEDQ LLDIETGELI SDDEYKESVFKAPYQHFVDTLKSKEFEDS ILFSYQVDSKFNRKI SDATIYATRQ AKVGKDKADETYVLGKIKDIYTQDGYDAFMKIYKKDKSKFLMYRHDPQTFEKVIEPILENYPNK QINEKGKEVPCNPFLKYKEEHGYIRKYSKKGNGPEIKSLKYYDSKLGNHIDITPKDSNNKVVLQ SVSPWRADVYFNKTTGKYEILGLKYADLQFEKGTGTYKI SQEKYNDIKKKEGVDSDSEFKFTLY KNDLLLVKDTETKEQQLFRFLSRTMPKQKHYVELKPYDKQKFEGGEALIKVLGNVANSGQCKKG LGKSNI S IYKVRTDVLGNQHI IKNEGDKPKLDF
SEQ ID NO: 347
MNAEHGKEGLLIMEENFQYRIGLDIGITSVGWAVLQNNSQDEPVRITDLGVRIFDVAENPKNGD ALAAPRRDARTTRRRLRRRRHRLERIKFLLQENGLIEMDSFMERYYKGNLPDVYQLRYEGLDRK LKDEELAQVLIHIAKHRGFRSTRKAETKEKEGGAVLKATTENQKIMQEKGYRTVGEMLYLDEAF HTECLWNEKGYVLTPRNRPDDYKHTILRSMLVEEVHAIFAAQRAHGNQKATEGLEEAYVEIMTS QRSFDMGPGLQPDGKPSPYAMEGFGDRVGKCTFEKDEYRAPKATYTAELFVALQKINHTKLIDE FGTGRFFSEEERKTI IGLLLSSKELKYGTIRKKLNIDPSLKFNSLNYSAKKEGETEEERVLDTE KAKFASMFWTYEYSKCLKDRTEEMPVGEKADLFDRIGEILTAYKNDDSRSSRLKELGLSGEEID GLLDLSPAKYQRVSLKAMRKMQPYLEDGLIYDKACEAAGYDFRALNDGNKKHLLKGEEINAIVN DITNPVVKRSVSQTIKVINAI IQKYGSPQAVNIELAREMSKNFQDRTNLEKEMKKRQQENERAK QQI IELGKQNPTGQDILKYRLWNDQGGYCLYSGKKIPLEELFDGGYDIDHILPYS ITFDDSYRN KVLVTAQENRQKGNRTPYEYFGADEKRWEDYEASVRLLVRDYKKQQKLLKKNFTEEERKEFKER NLNDTKYITRVVYNMIRQNLELEPFNHPEKKKQVWAVNGAVTSYLRKRWGLMQKDRSTDRHHAM DAVVIACCTDGMIHKI SRYMQGRELAYSRNFKFPDEETGEILNRDNFTREQWDEKFGVKVPLPW NSFRDELDIRLLNEDPKNFLLTHADVQRELDYPGWMYGEEESPIEEGRYINYIRPLFVSRMPNH KVTGSAHDATIRSARDYETRGVVITKVPLTDLKLNKDNEIEGYYDKDSDRLLYQALVRQLLLHG NDGKKAFAEDFHKPKADGTEGPVVRKVKIEKKQTSGVMVRGGTGIAANGEMVRIDVFRENGKYY FVPVYTADVVRKVLPNRAATHTKPYSEWRVMDDANFVFSLYSRDLIHVKSKKDIKTNLVNGGLL LQKEIFAYYTGADIATAS IAGFANDSNFKFRGLGIQSLEIFEKCQVDILGNI SVVRHENRQEFH
SEQ ID NO: 348
MRVLGLDAGIASLGWALIEIEESNRGELSQGTI IGAGTWMFDAPEEKTQAGAKLKSEQRRTFRG QRRVVRRRRQRMNEVRRILHSHGLLPSSDRDALKQPGLDPWRIRAEALDRLLGPVELAVALGHI ARHRGFKSNSKGAKTNDPADDTSKMKRAVNETREKLARFGSAAKMLVEDESFVLRQTPTKNGAS EIVRRFRNREGDYSRSLLRDDLAAEMRALFTAQARFQSAIATADLQTAFTKAAFFQRPLQDSEK LVGPCPFEVDEKRAPKRGYSFELFRFLSRLNHVTLRDGKQERTLTRDELALAAADFGAAAKVSF TALRKKLKLPETTVFVGVKADEESKLDVVARSGKAAEGTARLRSVIVDALGELAWGALLCSPEK LDKIAEVI SFRSDIGRI SEGLAQAGCNAPLVDALTAAASDGRFDPFTGAGHI SSKAARNILSGL RQGMTYDKACCAADYDHTASRERGAFDVGGHGREALKRILQEERI SRELVGSPTARKALIES IK QVKAIVERYGVPDRIHVELARDVGKS IEEREEITRGIEKRNRQKDKLRGLFEKEVGRPPQDGAR GKEELLRFELWSEQMGRCLYTDDYI SPSQLVATDDAVQVDHILPWSRFADDSYANKTLCMAKAN QDKKGRTPYEWFKAEKTDTEWDAFIVRVEALADMKGFKKRNYKLRNAEEAAAKFRNRNLNDTRW ACRLLAEALKQLYPKGEKDKDGKERRRVFSRPGALTDRLRRAWGLQWMKKSTKGDRIPDDRHHA LDAIVIAATTESLLQRATREVQEIEDKGLHYDLVKNVTPPWPGFREQAVEAVEKVFVARAERRR ARGKAHDATIRHIAVREGEQRVYERRKVAELKLADLDRVKDAERNARLIEKLRNWIEAGSPKDD PPLSPKGDPIFKVRLVTKSKVNIALDTGNPKRPGTVDRGEMARVDVFRKASKKGKYEYYLVPIY PHDIATMKTPPIRAVQAYKPEDEWPEMDSSYEFCWSLVPMTYLQVI SSKGEIFEGYYRGMNRSV GAIQLSAHSNSSDVVQGIGARTLTEFKKFNVDRFGRKHEVERELRTWRGETWRGKAYI
SEQ ID NO: 349
MGNYYLGLDVGIGS IGWAVINIEKKRIEDFNVRIFKSGEIQEKNRNSRASQQCRRSRGLRRLYR RKSHRKLRLKNYLS I IGLTTSEKIDYYYETADNNVIQLRNKGLSEKLTPEEIAACLIHICNNRG YKDFYEVNVEDIEDPDERNEYKEEHDS IVLI SNLMNEGGYCTPAEMICNCREFDEPNSVYRKFH NSAASKNHYLITRHMLVKEVDLILENQSKYYGILDDKTIAKIKDI IFAQRDFEIGPGKNERFRR FTGYLDS IGKCQFFKDQERGSRFTVIADIYAFVNVLSQYTYTNNRGESVFDTSFANDLINSALK NGSMDKRELKAIAKSYHIDI SDKNSDTSLTKCFKYIKVVKPLFEKYGYDWDKLIENYTDTDNNV LNRIGIVLSQAQTPKRRREKLKALNIGLDDGLINELTKLKLSGTANVSYKYMQGS IEAFCEGDL YGKYQAKFNKEIPDIDENAKPQKLPPFKNEDDCEFFKNPVVFRS INETRKLINAI IDKYGYPAA VNIETADELNKTFEDRAIDTKRNNDNQKENDRIVKEI IECIKCDEVHARHLIEKYKLWEAQEGK CLYSGETITKEDMLRDKDKLFEVDHIVPYSLILDNTINNKALVYAEENQKKGQRTPLMYMNEAQ AADYRVRVNTMFKSKKCSKKKYQYLMLPDLNDQELLGGWRSRNLNDTRYICKYLVNYLRKNLRF DRSYESSDEDDLKIRDHYRVFPVKSRFTSMFRRWWLNEKTWGRYDKAELKKLTYLDHAADAI I I ANCRPEYVVLAGEKLKLNKMYHQAGKRITPEYEQSKKACIDNLYKLFRMDRRTAEKLLSGHGRL TPI IPNLSEEVDKRLWDKNIYEQFWKDDKDKKSCEELYRENVASLYKGDPKFASSLSMPVI SLK PDHKYRGTITGEEAIRVKEIDGKLIKLKRKSISEITAESINSIYTDDKILIDSLKTIFEQADYK DVGDYLKKTNQHFFTTSSGKRVNKVTVIEKVPSRWLRKEIDDNNFSLLNDSSYYCIELYKDSKG DNNLQGIAMSDIVHDRKTKKLYLKPDFNYPDDYYTHVMYIFPGDYLRIKSTSKKSGEQLKFEGY FI SVKNVNENSFRFI SDNKPCAKDKRVS ITKKDIVIKLAVDLMGKVQGENNGKGI SCGEPLSLL KEKN SEQ ID NO: 350
MLSRQLLGASHLARPVSYSYNVQDNDVHCSYGERCFMRGKRYRIGIDVGLNSVGLAAVEVSDEN SPVRLLNAQSVIHDGGVDPQKNKEAITRKNMSGVARRTRRMRRRKRERLHKLDMLLGKFGYPVI EPESLDKPFEEWHVRAELATRYIEDDELRRES I S IALRHMARHRGWRNPYRQVDSLI SDNPYSK QYGELKEKAKAYNDDATAAEEESTPAQLVVAMLDAGYAEAPRLRWRTGSKKPDAEGYLPVRLMQ EDNANELKQIFRVQRVPADEWKPLFRSVFYAVSPKGSAEQRVGQDPLAPEQARALKASLAFQEY RIANVITNLRIKDASAELRKLTVDEKQS IYDQLVSPSSEDITWSDLCDFLGFKRSQLKGVGSLT EDGEERI SSRPPRLTSVQRIYESDNKIRKPLVAWWKSASDNEHEAMIRLLSNTVDIDKVREDVA YASAIEFIDGLDDDALTKLDSVDLPSGRAAYSVETLQKLTRQMLTTDDDLHEARKTLFNVTDSW RPPADPIGEPLGNPSVDRVLKNVNRYLMNCQQRWGNPVSVNIEHVRSSFSSVAFARKDKREYEK NNEKRS IFRSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRK GVGSTNTRTNFAAVCAECNRMKSNTPFAIWARSEDAQTRGVSLAEAKKRVTMFTFNPKSYAPRE VKAFKQAVIARLQQTEDDAAIDNRS IESVAWMADELHRRIDWYFNAKQYVNSAS IDDAEAETMK TTVSVFQGRVTASARRAAGIEGKIHFIGQQSKTRLDRRHHAVDASVIAMMNTAAAQTLMERESL RESQRLIGLMPGERSWKEYPYEGTSRYESFHLWLDNMDVLLELLNDALDNDRIAVMQSQRYVLG NSIAHDATIHPLEKVPLGSAMSADLIRRASTPALWCALTRLPDYDEKEGLPEDSHREIRVHDTR YSADDEMGFFASQAAQIAVQEGSADIGSAIHHARVYRCWKTNAKGVRKYFYGMIRVFQTDLLRA CHDDLFTVPLPPQS I SMRYGEPRVVQALQSGNAQYLGSLVVGDEIEMDFSSLDVDGQIGEYLQF FSQFSGGNLAWKHWVVDGFFNQTQLRIRPRYLAAEGLAKAFSDDVVPDGVQKIVTKQGWLPPVN TASKTAVRIVRRNAFGEPRLSSAHHMPCSWQWRHE
SEQ ID NO: 351
MYS IGLDLGI SSVGWSVIDERTGNVIDLGVRLFSAKNSEKNLERRTNRGGRRLIRRKTNRLKDA KKILAAVGFYEDKSLKNSCPYQLRVKGLTEPLSRGEIYKVTLHILKKRGI SYLDEVDTEAAKES QDYKEQVRKNAQLLTKYTPGQIQLQRLKENNRVKTGINAQGNYQLNVFKVSAYANELATILKTQ QAFYPNELTDDWIALFVQPGIAEEAGLIYRKRPYYHGPGNEANNSPYGRWSDFQKTGEPATNIF DKLIGKDFQGELRASGLSLSAQQYNLLNDLTNLKIDGEVPLSSEQKEYILTELMTKEFTRFGVN DVVKLLGVKKERLSGWRLDKKGKPEIHTLKGYRNWRKIFAEAGIDLATLPTETIDCLAKVLTLN TEREGIENTLAFELPELSESVKLLVLDRYKELSQS I STQSWHRFSLKTLHLLIPELMNATSEQN TLLEQFQLKSDVRKRYSEYKKLPTKDVLAEIYNPTVNKTVSQAFKVIDALLVKYGKEQIRYITI EMPRDDNEEDEKKRIKELHAKNSQRKNDSQSYFMQKSGWSQEKFQTTIQKNRRFLAKLLYYYEQ DGICAYTGLPI SPELLVSDSTEIDHI IPI S I SLDDS INNKVLVLSKANQVKGQQTPYDAWMDGS FKKINGKFSNWDDYQKWVESRHFSHKKENNLLETRNIFDSEQVEKFLARNLNDTRYASRLVLNT LQSFFTNQETKVRVVNGSFTHTLRKKWGADLDKTRETHHHHAVDATLCAVTSFVKVSRYHYAVK EETGEKVMREIDFETGEIVNEMSYWEFKKSKKYERKTYQVKWPNFREQLKPVNLHPRIKFSHQV DRKANRKLSDATIYSVREKTEVKTLKSGKQKITTDEYTIGKIKDIYTLDGWEAFKKKQDKLLMK DLDEKTYERLLS IAETTPDFQEVEEKNGKVKRVKRSPFAVYCEENDIPAIQKYAKKNNGPLIRS LKYYDGKLNKHINITKDSQGRPVEKTKNGRKVTLQSLKPYRYDIYQDLETKAYYTVQLYYSDLR FVEGKYGITEKEYMKKVAEQTKGQVVRFCFSLQKNDGLEIEWKDSQRYDVRFYNFQSANS INFK GLEQEMMPAENQFKQKPYNNGAINLNIAKYGKEGKKLRKFNTDILGKKHYLFYEKEPKNI IK
SEQ ID NO: 352
MYFYKNKENKLNKKVVLGLDLGIASVGWCLTDI SQKEDNKFPI ILHGVRLFETVDDSDDKLLNE TRRKKRGQRRRNRRLFTRKRDFIKYLIDNNI IELEFDKNPKILVRNFIEKYINPFSKNLELKYK SVTNLPIGFHNLRKAAINEKYKLDKSELIVLLYFYLSLRGAFFDNPEDTKSKEMNKNEIEIFDK NES IKNAEFPIDKI IEFYKI SGKIRSTINLKFGHQDYLKEIKQVFEKQNIDFMNYEKFAMEEKS FFSRIRNYSEGPGNEKSFSKYGLYANENGNPELI INEKGQKIYTKIFKTLWESKIGKCSYDKKL YRAPKNSFSAKVFDITNKLTDWKHKNEYI SERLKRKILLSRFLNKDSKSAVEKILKEE IKFEN LSEIAYNKDDNKINLPI INAYHSLTTIFKKHLINFENYLI SNENDLSKLMSFYKQQSEKLFVPN EKGSYEINQNNNVLHIFDAISNILNKFSTIQDRIRILEGYFEFSNLKKDVKSSEIYSEIAKLRE FSGTSSLSFGAYYKFIPNLISEGSKNYSTISYEEKALQNQKNNFSHSNLFEKTWVEDLIASPTV KRSLRQTMNLLKEIFKYSEKNNLEIEKIVVEVTRSSNNKHERKKIEGINKYRKEKYEELKKVYD LPNENTTLLKKLWLLRQQQGYDAYSLRKIEANDVINKPWNYDIDHIVPRS I SFDDSFSNLVIVN KLDNAKKSNDLSAKQFIEKIYGIEKLKEAKENWGNWYLRNANGKAFNDKGKFIKLYTIDNLDEF DNSDFINRNLSDTSYITNALVNHLTFSNSKYKYSVVSVNGKQTSNLRNQIAFVGIKNNKETERE WKRPEGFKSINSNDFLIREEGKNDVKDDVLIKDRSFNGHHAEDAYFITI ISQYFRSFKRIERLN VNYRKETRELDDLEKNNIKFKEKASFDNFLLINALDELNEKLNQMRFSRMVITKKNTQLFNETL YSGKYDKGKNTIKKVEKLNLLDNRTDKIKKIEEFFDEDKLKENELTKLHIFNHDKNLYETLKII WNEVKIEIKNKNLNEKNYFKYFVNKKLQEGKI SFNEWVPILDNDFKI IRKIRYIKFSSEEKETD EI IFSQSNFLKIDQRQNFSFHNTLYWVQIWVYKNQKDQYCFI S IDARNSKFEKDEIKINYEKLK TQKEKLQI INEEPILKINKGDLFENEEKELFYIVGRDEKPQKLEIKYILGKKIKDQKQIQKPVK KYFPNWKKVNLTYMGEIFKK
SEQ ID NO: 353
MDNKNYRIGIDVGLNS IGFCAVEVDQHDTPLGFLNLSVYRHDAGIDPNGKKTNTTRLAMSGVAR RTRRLFRKRKRRLAALDRFIEAQGWTLPDHADYKDPYTPWLVRAELAQTPIRDENDLHEKLAIA VRHIARHRGWRSPWVPVRSLHVEQPPSDQYLALKERVEAKTLLQMPEGATPAEMVVALDLSVDV NLRPKNREKTDTRPENKKPGFLGGKLMQSDNANELRKIAKIQGLDDALLRELIELVFAADSPKG ASGELVGYDVLPGQHGKRRAEKAHPAFQRYRIAS IVSNLRIRHLGSGADERLDVETQKRVFEYL LNAKPTADITWSDVAEEIGVERNLLMGTATQTADGERASAKPPVDVTNVAFATCKIKPLKEWWL NADYEARCVMVSALSHAEKLTEGTAAEVEVAEFLQNLSDEDNEKLDSFSLPIGRAAYSVDSLER LTKRMIENGEDLFEARVNEFGVSEDWRPPAEPIGARVGNPAVDRVLKAVNRYLMAAEAEWGAPL SV IEHVREGFI SKRQAVEIDRENQKRYQRNQAVRSQIADHINATSGVRGSDVTRYLAIQRQNG ECLYCGTAITFVNSEMDHIVPRAGLGSTNTRDNLVATCERCNKSKSNKPFAVWAAECGIPGVSV AEALKRVDFWIADGFASSKEHRELQKGVKDRLKRKVSDPEIDNRSMESVAWMARELAHRVQYYF DEKHTGTKVRVFRGSLTSAARKASGFESRVNFIGGNGKTRLDRRHHAMDAATVAMLRNSVAKTL VLRGNIRASERAIGAAETWKSFRGENVADRQIFESWSENMRVLVEKFNLALYNDEVS IFSSLRL QLGNGKAHDDTITKLQMHKVGDAWSLTEIDRASTPALWCALTRQPDFTWKDGLPANEDRTIIVN GTHYGPLDKVGIFGKAAASLLVRGGSVDIGSAIHHARIYRIAGKKPTYGMVRVFAPDLLRYRNE DLFNVELPPQSVSMRYAEPKVREAIREGKAEYLGWLVVGDELLLDLSSETSGQIAELQQDFPGT THWTVAGFFSPSRLRLRPVYLAQEGLGEDVSEGSKS I IAGQGWRPAVNKVFGSAMPEVIRRDGL GRKRRFSYSGLPVSWQG
SEQ ID NO: 354
MRLGLDIGTSS IGWWLYETDGAGSDARITGVVDGGVRIFSDGRDPKSGASLAVDRRAARAMRRR RDRYLRRRATLMKVLAETGLMPADPAEAKALEALDPFALRAAGLDEPLPLPHLGRALFHLNQRR GFKSNRKTDRGDNESGKIKDATARLDMEMMANGARTYGEFLHKRRQKATDPRHVPSVRTRLSIA NRGGPDGKEEAGYDFYPDRRHLEEEFHKLWAAQGAHHPELTETLRDLLFEKIFFQRPLKEPEVG LCLFSGHHGVPPKDPRLPKAHPLTQRRVLYETVNQLRVTADGREARPLTREERDQVIHALDNKK PTKSLSSMVLKLPALAKVLKLRDGERFTLETGVRDAIACDPLRASPAHPDRFGPRWS ILDADAQ WEVI SRIRRVQSDAEHAALVDWLTEAHGLDRAHAEATAHAPLPDGYGRLGLTATTRILYQLTAD VVTYADAVKACGWHHSDGRTGECFDRLPYYGEVLERHVIPGSYHPDDDDITRFGRITNPTVHIG LNQLRRLVNRI IETHGKPHQIVVELARDLKKSEEQKRADIKRIRDTTEAAKKRSEKLEELEIED NGRNRMLLRLWEDLNPDDAMRRFCPYTGTRI SAAMIFDGSCDVDHILPYSRTLDDSFPNRTLCL REANRQKRNQTPWQAWGDTPHWHAIAANLKNLPENKRWRFAPDAMTRFEGENGFLDRALKDTQY LARI SRSYLDTLFTKGGHVWVVPGRFTEMLRRHWGLNSLLSDAGRGAVKAKNRTDHRHHAIDAA VIAATDPGLLNRI SRAAGQGEAAGQSAELIARDTPPPWEGFRDDLRVRLDRI IVSHRADHGRID HAARKQGRDSTAGQLHQETAYS IVDDIHVASRTDLLSLKPAQLLDEPGRSGQVRDPQLRKALRV ATGGKTGKDFENALRYFASKPGPYQAIRRVRI IKPLQAQARVPVPAQDPIKAYQGGSNHLFEIW RLPDGEIEAQVITSFEAHTLEGEKRPHPAAKRLLRVHKGDMVALERDGRRVVGHVQKMDIANGL FIVPHNEANADTRNNDKSDPFKWIQIGARPAIASGIRRVSVDEIGRLRDGGTRPI
SEQ ID NO: 355
MLHCIAVIRVPPSEEPGFFETHADSCALCHHGCMTYAANDKAIRYRVGIDVGLRS IGFCAVEVD DEDHPIRILNSVVHVHDAGTGGPGETESLRKRSGVAARARRRGRAEKQRLKKLDVLLEELGWGV SSNELLDSHAPWHIRKRLVSEYIEDETERRQCLSVAMAHIARHRGWRNSFSKVDTLLLEQAPSD RMQGLKERVEDRTGLQFSEEVTQGELVATLLEHDGDVTIRGFVRKGGKATKVHGVLEGKYMQSD LVAELRQICRTQRVSETTFEKLVLS IFHSKEPAPSAARQRERVGLDELQLALDPAAKQPRAERA HPAFQKFKVVATLANMRIREQSAGERSLTSEELNRVARYLLNHTESESPTWDDVARKLEVPRHR LRGSSRASLETGGGLTYPPVDDTTVRVMSAEVDWLADWWDCANDESRGHMIDAI SNGCGSEPDD VEDEEVNELI SSATAEDMLKLELLAKKLPSGRVAYSLKTLREVTAAILETGDDLSQAITRLYGV DPGWVPTPAPIEAPVGNPSVDRVLKQVARWLKFASKRWGVPQTVNIEHTREGLKSASLLEEERE RWERFEARREIRQKEMYKRLGI SGPFRRSDQVRYEILDLQDCACLYCGNEINFQTFEVDHI IPR VDASSDSRRTNLAAVCHSCNSAKGGLAFGQWVKRGDCPSGVSLENAIKRVRSWSKDRLGLTEKA MGKRKSEVI SRLKTEMPYEEFDGRSMESVAWMAIELKKRIEGYFNSDRPEGCAAVQVNAYSGRL TACARRAAHVDKRVRLIRLKGDDGHHKNRFDRRNHAMDALVIALMTPAIARTIAVREDRREAQQ LTRAFESWKNFLGSEERMQDRWESWIGDVEYACDRLNELIDADKIPVTENLRLRNSGKLHADQP ESLKKARRGSKRPRPQRYVLGDALPADVINRVTDPGLWTALVRAPGFDSQLGLPADLNRGLKLR GKRI SADFPIDYFPTDSPALAVQGGYVGLEFHHARLYRI IGPKEKVKYALLRVCAIDLCGIDCD DLFEVELKPSS I SMRTADAKLKEAMGNGSAKQIGWLVLGDEIQIDPTKFPKQS IGKFLKECGPV SSWRVSALDTPSKITLKPRLLSNEPLLKTSRVGGHESDLVVAECVEKIMKKTGWVVEINALCQS GLIRVIRRNALGEVRTSPKSGLPI SLNLR
SEQ ID NO: 356
MRYRVGLDLGTASVGAAVFSMDEQGNPMELIWHYERLFSEPLVPDMGQLKPKKAARRLARQQRR QIDRRASRLRRIAIVSRRLGIAPGRNDSGVHGNDVPTLRAMAVNERIELGQLRAVLLRMGKKRG YGGTFKAVRKVGEAGEVASGASRLEEEMVALASVQNKDSVTVGEYLAARVEHGLPSKLKVAANN EYYAPEYALFRQYLGLPAIKGRPDCLPNMYALRHQIEHEFERIWATQSQFHDVMKDHGVKEEIR NAIFFQRPLKSPADKVGRCSLQTNLPRAPRAQIAAQNFRIEKQMADLRWGMGRRAEMLNDHQKA VIRELLNQQKELSFRKIYKELERAGCPGPEGKGLNMDRAALGGRDDLSGNTTLAAWRKLGLEDR WQELDEVTQIQVINFLADLGSPEQLDTDDWSCRFMGKNGRPRNFSDEFVAFMNELRMTDGFDRL SKMGFEGGRSSYS IKALKALTEWMIAPHWRETPETHRVDEEAAIRECYPESLATPAQGGRQSKL EPPPLTGNEVVDVALRQVRHTINMMIDDLGSVPAQIVVEMAREMKGGVTRRNDIEKQNKRFASE RKKAAQS IEENGKTPTPARILRYQLWIEQGHQCPYCESNI SLEQALSGAYTNFEHILPRTLTQI GRKRSELVLAHRECNDEKGNRTPYQAFGHDDRRWRIVEQRANALPKKSSRKTRLLLLKDFEGEA LTDES IDEFADRQLHESSWLAKVTTQWLSSLGSDVYVSRGSLTAELRRRWGLDTVIPQVRFESG MPVVDEEGAEITPEEFEKFRLQWEGHRVTREMRTDRRPDKRIDHRHHLVDAIVTALTSRSLYQQ YAKAWKVADEKQRHGRVDVKVELPMPILTIRDIALEAVRSVRI SHKPDRYPDGRFFEATAYGIA QRLDERSGEKVDWLVSRKSLTDLAPEKKS IDVDKVRANI SRIVGEAIRLHI SNIFEKRVSKGMT PQQALREPIEFQGNILRKVRCFYSKADDCVRIEHSSRRGHHYKMLLNDGFAYMEVPCKEGILYG VPNLVRPSEAVGIKRAPESGDFIRFYKGDTVKNIKTGRVYTIKQILGDGGGKLILTPVTETKPA DLLSAKWGRLKVGGRNIHLLRLCAE
SEQ ID NO: 357
MIGEHVRGGCLFDDHWTPNWGAFRLPNTVRTFTKAENPKDGSSLAEPRRQARGLRRRLRRKTQR LEDLRRLLAKEGVLSLSDLETLFRETPAKDPYQLRAEGLDRPLSFPEWVRVLYHITKHRGFQSN RRNPVEDGQERSRQEEEGKLLSGVGENERLLREGGYRTAGEMLARDPKFQDHRRNRAGDYSHTL SRSLLLEEARRLFQSQRTLGNPHASSNLEEAFLHLVAFQNPFASGEDIRNKAGHCSLEPDQIRA PRRSASAETFMLLQKTGNLRLIHRRTGEERPLTDKEREQIHLLAWKQEKVTHKTLRRHLEIPEE WLFTGLPYHRSGDKAEEKLFVHLAGIHEIRKALDKGPDPAVWDTLRSRRDLLDS IADTLTFYKN EDEILPRLESLGLSPENARALAPLSFSGTAHLSLSALGKLLPHLEEGKSYTQARADAGYAAPPP DRHPKLPPLEEADWRNPVVFRALTQTRKVVNALVRRYGPPWCIHLETARELSQPAKVRRRIETE QQANEKKKQQAEREFLDIVGTAPGPGDLLKMRLWREQGGFCPYCEEYLNPTRLAEPGYAEMDHI LPYSRSLDNGWHNRVLVHGKDNRDKGNRTPFEAFGGDTARWDRLVAWVQASHLSAPKKRNLLRE DFGEEAERELKDRNLTDTRFITKTAATLLRDRLTFHPEAPKDPVMTLNGRLTAFLRKQWGLHKN RKNGDLHHALDAAVLAVASRSFVYRLSSHNAAWGELPRGREAENGFSLPYPAFRSEVLARLCPT REEILLRLDQGGVGYDEAFRNGLRPVFVSRAPSRRLRGKAHMETLRSPKWKDHPEGPRTASRIP LKDLNLEKLERMVGKDRDRKLYEALRERLAAFGGNGKKAFVAPFRKPCRSGEGPLVRSLRIFDS GYSGVELRDGGEVYAVADHESMVRVDVYAKKNRFYLVPVYVADVARGIVKNRAIVAHKSEEEWD LVDGSFDFRFSLFPGDLVEIEKKDGAYLGYYKSCHRGDGRLLLDRHDRMPRESDCGTFYVSTRK DVLSMSKYQVDPLGEIRLVGSEKPPFVL
SEQ ID NO: 358
MEKKRKVTLGFDLGIASVGWAIVDSETNQVYKLGSRLFDAPDTNLERRTQRGTRRLLRRRKYRN QKFYNLVKRTEVFGLSSREAIENRFRELS IKYPNI IELKTKALSQEVCPDEIAWILHDYLKNRG YFYDEKETKEDFDQQTVESMPSYKLNEFYKKYGYFKGALSQPTESEMKDNKDLKEAFFFDFSNK EWLKEINYFFNVQKNILSETFIEEFKKIFSFTRDI SKGPGSDNMPSPYGIFGEFGDNGQGGRYE HIWDKNIGKCS IFTNEQRAPKYLPSALIFNFLNELANIRLYSTDKKNIQPLWKLSSVDKLNILL NLFNLPI SEKKKKLTSTNINDIVKKES IKS IMI SVEDIDMIKDEWAGKEPNVYGVGLSGLNIEE SAKENKFKFQDLKILNVLINLLDNVGIKFEFKDRNDI IKNLELLDNLYLFLIYQKESNNKDSS I DLFIAKNESLNIENLKLKLKEFLLGAGNEFENHNSKTHSLSKKAIDEILPKLLDNNEGWNLEAI KNYDEEIKSQIEDNSSLMAKQDKKYLNDNFLKDAILPPNVKVTFQQAILIFNKI IQKFSKDFEI DKVVIELAREMTQDQENDALKGIAKAQKSKKSLVEERLEANNIDKSVFNDKYEKLIYKIFLWI S QDFKDPYTGAQI SVNEIVNNKVEIDHI IPYSLCFDDSSANKVLVHKQSNQEKSNSLPYEYIKQG HSGWNWDEFTKYVKRVFVNNVDS ILSKKERLKKSENLLTASYDGYDKLGFLARNLNDTRYATIL FRDQLNNYAEHHLIDNKKMFKVIAMNGAVTSFIRKNMSYDNKLRLKDRSDFSHHAYDAAI IALF SNKTKTLYNLIDPSLNGI I SKRSEGYWVIEDRYTGEIKELKKEDWTS IKNNVQARKIAKEIEEY LIDLDDEVFFSRKTKRKTNRQLYNETIYGIATKTDEDGITNYYKKEKFS ILDDKDIYLRLLRER EKFVINQSNPEVIDQI IEI IESYGKENNIPSRDEAINIKYTKNKINYNLYLKQYMRSLTKSLDQ FSEEFINQMIANKTFVLYNPTKNTTRKIKFLRLVNDVKINDIRKNQVINKFNGKNNEPKAFYEN INSLGAIVFKNSANNFKTLS INTQIAIFGDKNWDIEDFKTYNMEKIEKYKEIYGIDKTYNFHSF IFPGTILLDKQNKEFYYI SS IQTVRDI IEIKFLNKIEFKDENKNQDTSKTPKRLMFGIKS IMNN YEQVDI SPFGINKKIFE
SEQ ID NO: 359
MGYRIGLDVGITSTGYAVLKTDKNGLPYKILTLDSVIYPRAENPQTGASLAEPRRIKRGLRRRT RRTKFRKQRTQQLFIHSGLLSKPEIEQILATPQAKYSVYELRVAGLDRRLTNSELFRVLYFFIG HRGFKSNRKAELNPENEADKKQMGQLLNS IEEIRKAIAEKGYRTVGELYLKDPKYNDHKRNKGY IDGYLSTPNRQMLVDEIKQILDKQRELGNEKLTDEFYATYLLGDENRAGIFQAQRDFDEGPGAG PYAGDQIKKMVGKDIFEPTEDRAAKATYTFQYFNLLQKMTSLNYQNTTGDTWHTLNGLDRQAII DAVFAKAEKPTKTYKPTDFGELRKLLKLPDDARFNLVNYGSLQTQKEIETVEKKTRFVDFKAYH DLVKVLPEEMWQSRQLLDHIGTALTLYSSDKRRRRYFAEELNLPAELIEKLLPLNFSKFGHLS I KSMQNI IPYLEMGQVYSEATTNTGYDFRKKQI SKDTIREEITNPVVRRAVTKTIKIVEQI IRRY GKPDGI IELARELGRNFKERGDIQKRQDKNRQTNDKIAAELTELGIPVNGQ I IRYKLHKEQN GVDPYTGDQIPFERAFSEGYEVDHI IPYS I SWDDSYTNKVLTSAKCNREKGNRIPMVYLANNEQ RLNALT IAD I IRNSRKRQKLLKQKLSDEELKDWKQR INDTRFITRVLYNYFRQAIEFNPEL EKKQRVLPLNGEVTSKIRSRWGFLKVREDGDLHHAIDATVIAAITPKFIQQVTKYSQHQEVKNN QALWHDAEIKDAEYAAEAQRMDADLFNKIFNGFPLPWPEFLDELLARI SDNPVEMMKSRSWNTY TPIEIAKLKPVFVVRLANHKI SGPAHLDTIRSAKLFDEKGIVLSRVS ITKLKINKKGQVATGDG IYDPENSNNGDKVVYSAIRQALEAHNGSGELAFPDGYLEYVDHGTKKLVRKVRVAKKVSLPVRL KNKAAADNGSMVRIDVFNTGKKFVFVPIYIKDTVEQVLPNKAIARGKSLWYQITESDQFCFSLY PGDMVHIESKTGIKPKYSNKENNTSVVPIKNFYGYFDGADIATAS ILVRAHDSSYTARS IGIAG LLKFEKYQVDYFGRYHKVHEKKRQLFVKRDE
SEQ ID NO: 360
MQKNINTKQNHIYIKQAQKIKEKLGDKPYRIGLDLGVGS IGFAIVSMEENDGNVLLPKEI IMVG SRIFKASAGAADRKLSRGQRNNHRHTRERMRYLWKVLAEQKLALPVPADLDRKENSSEGETSAK RFLGDVLQKDIYELRVKSLDERLSLQELGYVLYHIAGHRGSSAIRTFENDSEEAQKENTENKKI AG IKRLMAKKNYRTYGEYLYKEFFENKEKHKREKI SNAANNHKFSPTRDLVIKEAEAILKKQA GKDGFHKELTEEYIEKLTKAIGYESEKLIPESGFCPYLKDEKRLPASHKLNEERRLWETLNNAR YSDPIVDIVTGEITGYYEKQFTKEQKQKLFDYLLTGSELTPAQTKKLLGLKNTNFEDI ILQGRD KKAQKIKGYKLIKLESMPFWARLSEAQQDSFLYDWNSCPDEKLLTEKLSNEYHLTEEEIDNAFN EIVLSSSYAPLGKSAMLI ILEKIKNDLSYTEAVEEALKEGKLTKEKQAIKDRLPYYGAVLQEST QKI IAKGFSPQFKDKGYKTPHTNKYELEYGRIANPVVHQTLNELRKLVNEI IDILGKKPCEIGL ETARELKKSAEDRSKLSREQNDNESNRNRIYEIYIRPQQQVI ITRRENPRNYILKFELLEEQKS QCPFCGGQI SPNDI INNQADIEHLFPIAESEDNGRNNLVI SHSACNADKAKRSPWAAFASAAKD SKYDYNRILSNVKE IPHKAWRFNQGAFEKFIENKPMAARFKTDNSYI SKVAHKYLACLFEKPN IICVKGSLTAQLRMAWGLQGLMIPFAKQLITEKESESFNKDVNSNKKIRLDNRHHALDAIVIAY ASRGYGNLLNKMAGKDYKINYSERNWLSKILLPPNNIVWENIDADLESFESSVKTALKNAFISV KHDHSDNGELVKGTMYKIFYSERGYTLTTYKKLSALKLTDPQKKKTPKDFLETALLKFKGRESE MKNEKIKSAIENNKRLFDVIQDNLEKAKKLLEEENEKSKAEGKKEKNINDAS IYQKAI SLSGDK YVQLSKKEPGKFFAI SKPTPTTTGYGYDTGDSLCVDLYYDNKGKLCGEI IRKIDAQQKNPLKYK EQGFTLFERIYGGDILEVDFDIHSDKNSFRNNTGSAPENRVFIKVGTFTEITNNNIQIWFGNI I KSTGGQDDSFTINSMQQYNPRKLILSSCGFIKYRSPILKNKEG
SEQ ID NO: 361
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAI SRALEKEGLKDKKSPLNLSPELQDEIGT AFSLFKTDEDITGRLKDRIQPEILEALLKHI SFDKFVQI SLKALRRIVPLMEQGKRYDEACAEI YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR
SEQ ID NO: 362
MQTTNLSYILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRLARS TRRLIRRRAHRLLLAKRFLKREGILSTIDLEKGLPNQAWELRVAGLERRLSAIEWGAVLLHLIK HRGYLSKRKNESQTNNKELGALLSGVAQNHQLLQSDDYRTPAELALKKFAKEEGHIRNQRGAYT HTFNRLDLLAELNLLFAQQHQFGNPHCKEHIQQYMTELLMWQKPALSGEAILKMLGKCTHEKNE FKAAKHTYSAERFVWLTKLNNLRILEDGAERALNEEERQLLINHPYEKSKLTYAQVRKLLGLSE QAIFKHLRYSKENAESATFMELKAWHAIRKALENQGLKDTWQDLAKKPDLLDEIGTAFSLYKTD EDIQQYLTNKVPNSVINALLVSLNFDKFIELSLKSLRKILPLMEQGKRYDQACREIYGHHYGEA NQKTSQLLPAIPAQEIRNPVVLRTLSQARKVINAI IRQYGSPARVHIETGRELGKSFKERREIQ KQQEDNRTKRESAVQKFKELFSDFSSEPKSKDILKFRLYEQQHGKCLYSGKEINIHRLNEKGYV EIDHALPFSRTWDDSFNNKVLVLASENQNKGNQTPYEWLQGKINSERWKNFVALVLGSQCSAAK KQRLLTQVIDDNKFIDRNLNDTRYIARFLSNYIQENLLLVGKNKKNVFTPNGQITALLRSRWGL IKARENNNRHHALDAIVVACATPSMQQKITRFIRFKEVHPYKIENRYEMVDQESGEI I SPHFPE PWAYFRQEVNIRVFDNHPDTVLKEMLPDRPQANHQFVQPLFVSRAPTRKMSGQGHMETIKSAKR LAEGI SVLRIPLTQLKPNLLENMVNKEREPALYAGLKARLAEFNQDPAKAFATPFYKQGGQQVK AIRVEQVQKSGVLVRENNGVADNAS IVRTDVFIKNNKFFLVPIYTWQVAKGILPNKAIVAHKNE DEWEEMDEGAKFKFSLFPNDLVELKTKKEYFFGYYIGLDRATG I SLKEHDGEI SKGKDGVYRV GVKLALSFEKYQVDELGKNRQICRPQQRQPVR
SEQ ID NO: 363
MGIRFAFDLGTNS IGWAVWRTGPGVFGEDTAASLDGSGVLIFKDGRNPKDGQSLATMRRVPRQS RKRRDRFVLRRRDLLAALRKAGLFPVDVEEGRRLAATDPYHLRAKALDESLTPHEMGRVIFHLN QRRGFRSNRKADRQDREKGKIAEGSKRLAETLAATNCRTLGEFLWSRHRGTPRTRSPTRIRMEG EGAKALYAFYPTREMVRAEFERLWTAQSRFAPDLLTPERHEEIAGILFRQRDLAPPKIGCCTFE PSERRLPRALPSVEARGIYERLAHLRITTGPVSDRGLTRPERDVLASALLAGKSLTFKAVRKTL KILPHALVNFEEAGEKGLDGALTAKLLSKPDHYGAAWHGLSFAEKDTFVGKLLDEADEERLIRR LVTENRLSEDAARRCAS IPLADGYGRLGRTANTEILAALVEETDETGTVVTYAEAVRRAGERTG RNWHHSDERDGVILDRLPYYGEILQRHVVPGSGEPEEKNEAARWGRLANPTVHIGLNQLRKVVN RLIAAHGRPDQIVVELARELKLNREQKERLDRENRKNREENERRTAILAEHGQRDTAENKIRLR LFEEQARANAGIALCPYTGRAIGIAELFTSEVEIDHILPVSLTLDDSLANRVLCRREANREKRR QTPFQAFGATPAWNDIVARAAKLPPNKRWRFDPAALERFEREGGFLGRQLNETKYLSRLAKIYL GKICDPDRVYVTPGTLTGLLRARWGLNS ILSDSNFKNRSDHRHHAVDAVVIGVLTRGMIQRIAH DAARAEDQDLDRVFRDVPVPFEDFRDHVRERVSTITVAVKPEHGKGGALHEDTSYGLVPDTDPN AALGNLVVRKPIRSLTAGEVDRVRDRALRARLGALAAPFRDESGRVRDAKGLAQALEAFGAENG IRRVRILKPDASVVTIADRRTGVPYRAVAPGENHHVDIVQMRDGSWRGFAASVFEVNRPGWRPE WEVKKLGGKLVMRLHKGDMVELSDKDGQRRVKVVQQIEI SANRVRLSPHNDGGKLQDRHADADD PFRWDLATIPLLKDRGCVAVRVDPIGVVTLRRSNV SEQ ID NO: 364
MMEVFMGRLVLGLDIGITSVGFGI IDLDESEIVDYGVRLFKEGTAAENETRRTKRGGRRLKRRR VTRREDMLHLLKQAGI I STSFHPLNNPYDVRVKGLNERLNGEELATALLHLCKHRGSSVETIED DEAKAKEAGETKKVLSMNDQLLKSGKYVCEIQKERLRTNGHIRGHENNFKTRAYVDEAFQILSH QDLSNELKSAI ITI I SRKRMYYDGPGGPLSPTPYGRYTYFGQKEPIDLIEKMRGKCSLFPNEPR APKLAYSAELFNLLNDLNNLS IEGEKLTSEQKAMILKIVHEKGKITPKQLAKEVGVSLEQIRGF RIDTKGSPLLSELTGYKMIREVLEKSNDEHLEDHVFYDEIAEILTKTKDIEGRKKQI SELSSDL NEESVHQLAGLTKFTAYHSLSFKALRLINEEMLKTELNQMQS ITLFGLKQNNELSVKGMK IQA DDTAILSPVAKRAQRETFKVVNRLREIYGEFDS IVVEMAREKNSEEQRKAIRERQKFFEMRNKQ VADI IGDDRKINAKLREKLVLYQEQDGKTAYSLEPIDLKLLIDDPNAYEVDHI IPI S I SLDDS I TNKVLVTHRENQEKGNLTPI SAFVKGRFTKGSLAQYKAYCLKLKEK IKTNKGYRKKVEQYLLN ENDIYKYDIQKEFINRNLVDTSYASRVVLNTLTTYFKQNEIPTKVFTVKGSLTNAFRRKINLKK DRDEDYGHHAIDALI IASMPKMRLLSTIFSRYKIEDIYDESTGEVFSSGDDSMYYDDRYFAFIA SLKAIKVRKFSHKIDTKPNRSVADETIYSTRVIDGKEKVVKKYKDIYDPKFTALAEDILNNAYQ EKYLMALHDPQTFDQIVKVVNYYFEEMSKSEKYFTKDKKGRIKI SGMNPLSLYRDEHGMLKKYS KKGDGPAITQMKYFDGVLGNHIDI SAHYQVRDKKVVLQQI SPYRTDFYYSKENGYKFVTIRYKD VRWSEKKKKYVIDQQDYAMKKAEKKIDDTYEFQFSMHRDELIGITKAEGEALIYPDETWHNFNF FFHAGETPEILKFTATNNDKSNKIEVKPIHCYCKMRLMPTI SKKIVRIDKYATDVVGNLYKVKK NTLKFEFD
SEQ ID NO: 365
MKKILGVDLGITSFGYAILQETGKDLYRCLDNSVVMRNNPYDEKSGESSQS IRSTQKSMRRLIE KRKKRIRCVAQTMERYGILDYSETMKINDPKNNPIKNRWQLRAVDAWKRPLSPQELFAIFAHMA KHRGYKS IATEDLIYELELELGLNDPEKESEKKADERRQVYNALRHLEELRKKYGGETIAQTIH RAVEAGDLRSYRNHDDYEKMIRREDIEEEIEKVLLRQAELGALGLPEEQVSELIDELKACITDQ EMPTIDESLFGKCTFYKDELAAPAYSYLYDLYRLYKKLADLNIDGYEVTQEDREKVIEWVEKKI AQGKNLKKITHKDLRKILGLAPEQKIFGVEDERIVKGKKEPRTFVPFFFLADIAKFKELFASIQ KHPDALQIFRELAEILQRSKTPQEALDRLRALMAGKGIDTDDRELLELFKNKRSGTRELSHRYI LEALPLFLEGYDEKEVQRILGFDDREDYSRYPKSLRHLHLREGNLFEKEENPINNHAVKSLASW ALGLIADLSWRYGPFDEI ILETTRDALPEKIRKEIDKAMREREKALDKI IGKYKKEFPS IDKRL ARKIQLWERQKGLDLYSGKVINLSQLLDGSADIEHIVPQSLGGLSTDYNTIVTLKSVNAAKGNR LPGDWLAGNPDYRERIGMLSEKGLIDWKKRKNLLAQSLDEIYTENTHSKGIRATSYLEALVAQV LKRYYPFPDPELRKNGIGVRMIPGKVTSKTRSLLGIKSKSRETNFHHAEDALILSTLTRGWQNR LHRMLRDNYGKSEAELKELWKKYMPHIEGLTLADYIDEAFRRFMSKGEESLFYRDMFDTIRS I S YWVDKKPLSASSHKETVYSSRHEVPTLRKNILEAFDSLNVIKDRHKLTTEEFMKRYDKEIRQKL WLHRIGNTNDESYRAVEERATQIAQILTRYQLMDAQNDKEIDEKFQQALKELITSPIEVTGKLL RKMRFVYDKLNAMQIDRGLVETDKNMLGIHI SKGPNEKLIFRRMDVNNAHELQKERSGILCYLN EMLFIFNKKGLIHYGCLRSYLEKGQGSKYIALFNPRFPANPKAQPSKFTSDSKIKQVGIGSATG I IKAHLDLDGHVRSYEVFGTLPEGS IEWFKEESGYGRVEDDPHH
SEQ ID NO: 366
MRPIEPWILGLDIGTDSLGWAVFSCEEKGPPTAKELLGGGVRLFDSGRDAKDHTSRQAERGAFR RARRQTRTWPWRRDRLIALFQAAGLTPPAAETRQIALALRREAVSRPLAPDALWAALLHLAHHR GFRSNRIDKRERAAAKALAKAKPAKATAKATAPAKEADDEAGFWEGAEAALRQRMAASGAPTVG ALLADDLDRGQPVRMRYNQSDRDGVVAPTRALIAEELAEIVARQSSAYPGLDWPAVTRLVLDQR PLRSKGAGPCAFLPGEDRALRALPTVQDFI IRQTLANLRLPSTSADEPRPLTDEEHAKALALLS TARFVEWPALRRALGLKRGVKFTAETERNGAKQAARGTAGNLTEAILAPLIPGWSGWDLDRKDR VFSDLWAARQDRSALLALIGDPRGPTRVTEDETAEAVADAIQIVLPTGRASLSAKAARAIAQAM APGIGYDEAVTLALGLHHSHRPRQERLARLPYYAAALPDVGLDGDPVGPPPAEDDGAAAEAYYG RIG I SVHIALNETRKIVNALLHRHGPILRLVMVETTRELKAGADERKRMIAEQAERERENAEI DVELRKSDRWMANARERRQRVRLARRQNNLCPYTSTPIGHADLLGDAYDIDHVIPLARGGRDSL DNMVLCQSDANKTKGDKTPWEAFHDKPGWIAQRDDFLARLDPQTAKALAWRFADDAGERVARKS AEDEDQGFLPRQLTDTGYIARVALRYLSLVTNEPNAVVATNGRLTGLLRLAWDITPGPAPRDLL PTPRDALRDDTAARRFLDGLTPPPLAKAVEGAVQARLAALGRSRVADAGLADALGLTLASLGGG GKNRADHRHHFIDAAMIAVTTRGLINQINQASGAGRILDLRKWPRTNFEPPYPTFRAEVMKQWD HIHPS IRPAHRDGGSLHAATVFGVRNRPDARVLVQRKPVEKLFLDANAKPLPADKIAEI IDGFA SPRMAKRFKALLARYQAAHPEVPPALAALAVARDPAFGPRGMTANTVIAGRSDGDGEDAGLITP FRANPKAAVRTMGNAVYEVWEIQVKGRPRWTHRVLTRFDRTQPAPPPPPENARLVMRLRRGDLV YWPLESGDRLFLVKKMAVDGRLALWPARLATGKATALYAQLSCPNINLNGDQGYCVQSAEGIRK EKIRTTSCTALGRLRLSKKAT
SEQ ID NO: 367
MKYTLGLDVGIASVGWAVIDKDNNKI IDLGVRCFDKAEESKTGESLATARRIARGMRRRI SRRS QRLRLVKKLFVQYEI IKDSSEFNRIFDTSRDGWKDPWELRYNALSRILKPYELVQVLTHITKRR GFKSNRKEDLSTTKEGVVITS IKNNSEMLRTKNYRTIGEMIFMETPENSNKRNKVDEYIHTIAR EDLLNEIKYIFS IQRKLGSPFVTEKLEHDFLNIWEFQRPFASGDS ILSKVGKCTLLKEELRAPT SCYTSEYFGLLQS INNLVLVEDNNTLTLNNDQRAKI IEYAHFKNEIKYSEIRKLLDIEPEILFK AHNLTHKNPSGNNESKKFYEMKSYHKLKSTLPTDIWGKLHSNKESLDNLFYCLTVYKNDNEIKD YLQANNLDYLIEYIAKLPTFNKFKHLSLVAMKRI IPFMEKGYKYSDACNMAELDFTGSSKLEKC NKLTVEPI IENVTNPVVIRALTQARKVINAI IQKYGLPYMV IELAREAGMTRQDRDNLKKEHE NNRKAREKI SDLIRQNGRVASGLDILKWRLWEDQGGRCAYSGKPIPVCDLLNDSLTQIDHIYPY SRSMDDSYMNKVLVLTDENQNKRSYTPYEVWGSTEKWEDFEARIYSMHLPQSKEKRLLNRNFIT KDLDSFI SRNLNDTRYI SRFLKNYIESYLQFSNDSPKSCVVCVNGQCTAQLRSRWGLNKNREES DLHHALDAAVIACADRKI IKEITNYYNERENHNYKVKYPLPWHSFRQDLMETLAGVFI SRAPRR KITGPAHDETIRSPKHFNKGLTSVKIPLTTVTLEKLETMVKNTKGGI SDKAVYNVLKNRLIEHN NKPLKAFAEKIYKPLKNGTNGAI IRS IRVETPSYTGVFRNEGKGI SDNSLMVRVDVFKKKDKYY LVPIYVAHMIKKELPSKAIVPLKPESQWELIDSTHEFLFSLYQNDYLVIKTKKGITEGYYRSCH RGTGSLSLMPHFANNKNVKIDIGVRTAI S IEKYNVDILGNKS IVKGEPRRGMEKYNSFKSN
SEQ ID NO: 368
MIRTLGIDIGIAS IGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNKESLALPRTLARSAR RRNARKKGRIQQVKHYLSKALGLDLECFVQGEKLATLFQTSKDFLSPWELRERALYRVLDKEEL ARVILHIAKRRGYDDITYGVEDNDSGKIKKAIAENSKRIKEEQCKTIGEMMYKLYFQKSLNVRN KKESYNRCVGRSELREELKTIFQIQQELKSPWVNEELIYKLLGNPDAQSKQEREGLIFYQRPLK GFGDKIGKCSHIKKGENSPYRACKHAPSAEEFVALTKS INFLKNLTNRHGLCFSQEDMCVYLGK ILQEAQKNEKGLTYSKLKLLLDLPSDFEFLGLDYSGKNPEKAVFLSLPSTFKLNKITQDRKTQD KIANILGANKDWEAILKELESLQLSKEQIQTIKDAKLNFSKHINLSLEALYHLLPLMREGKRYD EGVEILQERGIFSKPQPKNRQLLPPLSELAKEESYFDIPNPVLRRALSEFRKVVNALLEKYGGF HYFHIELTRDVCKAKSARMQLEKINKKNKSENDAASQLLEVLGLPNTYNNRLKCKLWKQQEEYC LYSGEKITIDHLKDQRALQIDHAFPLSRSLDDSQSNKVLCLTSSNQEKSNKTPYEWLGSDEKKW DMYVGRVYSSNFSPSKKRKLTQKNFKERNEEDFLARNLVDTGYIGRVTKEYIKHSLSFLPLPDG KKEHIRI I SGSMTSTMRSFWGVQEKNRDHHLHHAQDAI I IACIEPSMIQKYTTYLKDKETHRLK SHQKAQILREGDHKLSLRWPMSNFKDKIQES IQNI IPSHHVSHKVTGELHQETVRTKEFYYQAF GGEEGVKKALKFGKIREINQGIVDNGAMVRVDIFKSKDKGKFYAVPIYTYDFAIGKLPNKAIVQ GKKNGI IKDWLEMDENYEFCFSLFKNDCIKIQTKEMQEAVLAIYKSTNSAKATIELEHLSKYAL KNEDEEKMFTDTDKEKNKTMTRESCGIQGLKVFQKVKLSVLGEVLEHKPRNRQNIALKTTPKHV
SEQ ID NO: 369
MKYS IGLDIGIASVGWSVINKDKERIEDMGVRIFQKAENPKDGSSLASSRREKRGSRRRNRRKK HRLDRIK ILCESGLVKKNEIEKIYKNAYLKSPWELRAKSLEAKI SNKEIAQILLHIAKRRGFK SFRKTDRNADDTGKLLSGIQENKKIMEEKGYLTIGDMVAKDPKFNTHVRNKAGSYLFSFSRKLL EDEVRKIQAKQKELGNTHFTDDVLEKYIEVFNSQRNFDEGPSKPSPYYSEIGQIAKMIGNCTFE SSEKRTAKNTWSGERFVFLQKLNNFRIVGLSGKRPLTEEERDIVEKEVYLKKEVRYEKLRKILY LKEEERFGDLNYSKDEKQDKKTEKTKFISLIGNYTIKKLNLSEKLKSEIEEDKSKLDKI IEILT FNKSDKTIESNLKKLELSREDIEILLSEEFSGTLNLSLKAIKKILPYLEKGLSYNEACEKADYD YKNNGIKFKRGELLPVVDKDLIANPVVLRAI SQTRKVVNAI IRKYGTPHTIHVEVARDLAKSYD DRQTI IKENKKRELENEKTKKFI SEEFGIKNVKGKLLLKYRLYQEQEGRCAYSRKELSLSEVIL DESMTDIDHI IPYSRSMDDSYSNKVLVLSGENRKKSNLLPKEYFDRQGRDWDTFVLNVKAMKIH PRKKSNLLKEKFTREDNKDWKSRALNDTRYI SRFVANYLENALEYRDDSPKKRVFMIPGQLTAQ LRARWRLNKVRENGDLHHALDAAVVAVTDQKAINNI SNI SRYKELKNCKDVIPS IEYHADEETG EVYFEEVKDTRFPMPWSGFDLELQKRLESENPREEFYNLLSDKRYLGWFNYEEGFIEKLRPVFV SRMPNRGVKGQAHQETIRSSKKI SNQIAVSKKPLNS IKLKDLEKMQGRDTDRKLYEALKNRLEE YDDKPEKAFAEPFYKPTNSGKRGPLVRGIKVEEKQNVGVYVNGGQASNGSMVRIDVFRKNGKFY TVPIYVHQTLLKELPNRAINGKPYKDWDLIDGSFEFLYSFYPNDLIEIEFGKSKS IKNDNKLTK TEIPEVNLSEVLGYYRGMDTSTGAATIDTQDGKIQMRIGIKTVKNIKKYQVDVLGNVYKVKREK RQTF
SEQ ID NO: 370
MSKKVSRRYEEQAQEICQRLGSRPYS IGLDLGVGS IGVAVAAYDPIKKQPSDLVFVSSRIFIPS TGAAERRQKRGQRNSLRHRANRLKFLWKLLAERNLMLSYSEQDVPDPARLRFEDAVVRANPYEL RLKGLNEQLTLSELGYALYHIANHRGSSSVRTFLDEEKSSDDKKLEEQQAMTEQLAKEKGI STF IEVLTAFNTNGLIGYRNSESVKSKGVPVPTRDI I SNEIDVLLQTQKQFYQEILSDEYCDRIVSA ILFENEKIVPEAGCCPYFPDEKKLPRCHFLNEERRLWEAINNARIKMPMQEGAAKRYQSASFSD EQRHILFHIARSGTDITPKLVQKEFPALKTS I IVLQGKEKAIQKIAGFRFRRLEEKSFWKRLSE EQKDDFFSAWTNTPDDKRLSKYLMKHLLLTENEVVDALKTVSLIGDYGPIGKTATQLLMKHLED GLTYTEALERGMETGEFQELSVWEQQSLLPYYGQILTGSTQALMGKYWHSAFKEKRDSEGFFKP NTNSDEEKYGRIANPVVHQTLNELRKLMNELITILGAKPQEITVELARELKVGAEKREDI IKQQ TKQEKEAVLAYSKYCEPNNLDKRYIERFRLLEDQAFVCPYCLEHI SVADIAAGRADVDHIFPRD DTADNSYGNKVVAHRQCNDIKGKRTPYAAFSNTSAWGPIMHYLDETPGMWRKRRKFETNEEEYA KYLQSKGFVSRFESDNSYIAKAAKEYLRCLFNPNNVTAVGSLKGMETS ILRKAWNLQGIDDLLG SRHWSKDADTSPTMRKNRDDNRHHGLDAIVALYCSRSLVQMINTMSEQGKRAVEIEAMIPIPGY ASEPNLSFEAQRELFRKKILEFMDLHAFVSMKTDNDANGALLKDTVYS ILGADTQGEDLVFVVK KKIKDIGVKIGDYEEVASAIRGRITDKQPKWYPMEMKDKIEQLQSKNEAALQKYKESLVQAAAV LEESNRKLIESGKKPIQLSEKTI SKKALELVGGYYYLI SNNKRTKTFVVKEPSNEVKGFAFDTG SNLCLDFYHDAQGKLCGEI IRKIQAMNPSYKPAYMKQGYSLYVRLYQGDVCELRASDLTEAESN LAKTTHVRLPNAKPGRTFVI I ITFTEMGSGYQIYFSNLAKSKKGQDTSFTLTTIKNYDVRKVQL SSAGLVRYVSPLLVDKIEKDEVALCGE
SEQ ID NO: 371 MNQKFILGLDIGITSVGYGLIDYETKNI IDAGVRLFPEANVENNEGRRSKRGSRRLKRRRIHRL ERVKKLLEDYNLLDQSQIPQSTNPYAIRVKGLSEALSKDELVIALLHIAKRRGIHKIDVIDSND DVGNELSTKEQLNKNSKLLKDKFVCQIQLERMNEGQVRGEKNRFKTADI IKEI IQLLNVQKNFH QLDENFINKYIELVEMRREYFEGPGKGSPYGWEGDPKAWYETLMGHCTYFPDELRSVKYAYSAD LFNALNDLNNLVIQRDGLSKLEYHEKYHI IENVFKQKKKPTLKQIANEINVNPEDIKGYRITKS GKPQFTEFKLYHDLKSVLFDQS ILENEDVLDQIAEILTIYQDKDS IKSKLTELDILLNEEDKEN IAQLTGYTGTHRLSLKCIRLVLEEQWYSSRNQMEIFTHLNIKPKKINLTAANKIPKAMIDEFIL SPVVKRTFGQAINLINKI IEKYGVPEDI I IELARENNSKDKQKFINEMQKKNENTRKRINEI IG KYGNQNAKRLVEKIRLHDEQEGKCLYSLES IPLEDLLNNPNHYEVDHI IPRSVSFDNSYHNKVL VKQSENSKKSNLTPYQYFNSGKSKLSYNQFKQHILNLSKSQDRI SKKKKEYLLEERDINKFEVQ KEFINRNLVDTRYATRELTNYLKAYFSANNMNVKVKTINGSFTDYLRKVWKFKKERNHGYKHHA EDALI IA ADFLFKENKKLKAVNSVLEKPEIESKQLDIQVDSEDNYSEMFI IPKQVQDIKDFRN FKYSHRVDKKPNRQLINDTLYSTRKKDNSTYIVQTIKDIYAKDNTTLKKQFDKSPEKFLMYQHD PRTFEKLEVIMKQYANEKNPLAKYHEETGEYLTKYSKKNNGPIVKSLKYIGNKLGSHLDVTHQF KSSTKKLVKLS IKPYRFDVYLTDKGYKFITI SYLDVLKKDNYYYIPEQKYDKLKLGKAIDKNAK FIASFYKNDLIKLDGEIYKI IGVNSDTRNMIELDLPDIRYKEYCELN IKGEPRIKKTIGKKVN SIEKLTTDVLGNVFTNTQYTKPQLLFKRGN
SEQ ID NO: 372
MIMKLEKWRLGLDLGTNS IGWSVFSLDKDNSVQDLIDMGVRIFSDGRDPKTKEPLAVARRTARS QRKLIYRRKLRRKQVFKFLQEQGLFPKTKEECMTLKSLNPYELRIKALDEKLEPYELGRALFNL AVRRGFKSNRKDGSREEVSEKKSPDEIKTQADMQTHLEKAIKENGCRTITEFLYKNQGENGGIR FAPGRMTYYPTRKMYEEEFNLIRSKQEKYYPQVDWDDIYKAIFYQRPLKPQQRGYCIYENDKER TFKAMPCSQKLRILQDIGNLAYYEGGSKKRVELNDNQDKVLYELLNSKDKVTFDQMRKALCLAD SNSFNLEENRDFLIGNPTAVKMRSKNRFGKLWDEIPLEEQDLI IETI ITADEDDAVYEVIKKYD LTQEQRDFIVKNTILQSGTSMLCKEVSEKLVKRLEEIADLKYHEAVESLGYKFADQTVEKYDLL PYYGKVLPGSTMEIDLSAPETNPEKHYGKI SNPTVHVALNQTRVVV ALIKEYGKPSQIAIELS RDLKNNVEKKAEIARKQNQRAKENIAINDTI SALYHTAFPGKSFYPNRNDRMKYRLWSELGLGN KCIYCGKGI SGAELFTKEIEIEHILPFSRTLLDAESNLTVAHSSCNAFKAERSPFEAFGTNPSG YSWQEI IQRANQLKNTSKKNKFSPNAMDSFEKDSSFIARQLSDNQYIAKAALRYLKCLVENPSD VWTTNGSMTKLLRDKWEMDS ILCRKFTEKEVALLGLKPEQIGNYKKNRFDHRHHAIDAVVIGLT DRSMVQKLATKNSHKGNRIEIPEFPILRSDLIEKVKNIVVSFKPDHGAEGKLSKETLLGKIKLH GKETFVCRENIVSLSEKNLDDIVDEIKSKVKDYVAKHKGQKIEAVLSDFSKENGIKKVRCVNRV QTPIEITSGKI SRYLSPEDYFAAVIWEIPGEKKTFKAQYIRRNEVEKNSKGLNVVKPAVLENGK PHPAAKQVCLLHKDDYLEFSDKGKMYFCRIAGYAATNNKLDIRPVYAVSYCADWINSTNETMLT GYWKPTPTQNWVSVNVLFDKQKARLVTVSPIGRVFRK
SEQ ID NO: 373
MSSKAIDSLEQLDLFKPQEYTLGLDLGIKS IGWAILSGERIANAGVYLFETAEELNSTGNKLI S KAAERGRKRRIRRMLDRKARRGRHIRYLLEREGLPTDELEEVVVHQSNRTLWDVRAEAVERKLT KQELAAVLFHLVRHRGYFPNTKKLPPDDESDSADEEQGKINRATSRLREELKASDCKTIGQFLA QNRDRQRNREGDYSNLMARKLVFEEALQILAFQRKQGHELSKDFEKTYLDVLMGQRSGRSPKLG NCSLIPSELRAPSSAPSTEWFKFLQNLGNLQI SNAYREEWS IDAPRRAQI IDACSQRSTSSYWQ IRRDFQIPDEYRFNLVNYERRDPDVDLQEYLQQQERKTLANFRNWKQLEKI IGTGHPIQTLDEA ARLITLIKDDEKLSDQLADLLPEASDKAITQLCELDFTTAAKI SLEAMYRILPHMNQGMGFFDA CQQESLPEIGVPPAGDRVPPFDEMYNPVVNRVLSQSRKLINAVIDEYGMPAKIRVELARDLGKG RELRERIKLDQLDKSKQNDQRAEDFRAEFQQAPRGDQSLRYRLWKEQNCTCPYSGRMIPVNSVL SEDTQIDHILPI SQSFDNSLSNKVLCFTEENAQKSNRTPFEYLDAADFQRLEAI SGNWPEAKRN KLLHKSFGKVAEEWKSRALNDTRYLTSALADHLRHHLPDSKIQTVNGRITGYLRKQWGLEKDRD KHTHHAVDAIVVACTTPAIVQQVTLYHQDIRRYKKLGEKRPTPWPETFRQDVLDVEEEIFITRQ PKKVSGGIQTKDTLRKHRSKPDRQRVALTKVKLADLERLVEKDASNRNLYEHLKQCLEESGDQP TKAFKAPFYMPSGPEAKQRPILSKVTLLREKPEPPKQLTELSGGRRYDSMAQGRLDIYRYKPGG KRKDEYRVVLQRMIDLMRGEENVHVFQKGVPYDQGPEIEQNYTFLFSLYFDDLVEFQRSADSEV IRGYYRTFNIANGQLKI STYLEGRQDFDFFGANRLAHFAKVQVNLLGKVIK
SEQ ID NO: 374
MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDGRNPKDGSSLAVTRRAARAMR RRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNPYALRAKGLQEALLPGEFARALFHINQ RRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMAEQGSRTVGEYLWTRLQQGQGVRARYREKPYTT EEGKKRIDKSYDLYIDRAMIEQEFDALWAAQAAFNPTLFHEAARADLKDTLLHQRPLRPVKPGR CTLLPEEERAPLALPSTQRFRIHQEVNHLRLLDENLREVALTLAQRDAVVTALETKAKLSFEQI RKLLKLSGSVQFNLEDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEIVWQLVTEEGEGA LIAWLQTHTGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITYDKAVQAAGFDHHSQ LGFEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPEDPDEKRYGKIANPTVHI GLNQVRMVVNALIRRYGRPTEVVIELARDLKQSREQKVEAQRRQADNQRRNARIRRS IAEVLGI GEERVRGSDIQKWICWEELSFDAADRRCPYSGVQI SAAMLLSDEVEVEHILPFSKTLDDSLNNR TVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPLRKRYRFAPDGYERWLGDDKDFL ARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALLRGKFGLNDVLGLDGEKNRNDHRHHAVDA CVIGVTDQGLMQRFATASAQARGDGLTRLVDGMPMPWPTYRDHVERAVRHIWVSHRPDHGFEGA MMEETSYGIRKDGS IKQRRKADGSAGREI SNLIRIHEATQPLRHGVSADGQPLAYKGYVGGSNY CIEITVNDKGKWEGEVI STFRAYGVVRAGGMGRLRNPHEGQNGRKLIMRLVIGDSVRLEVDGAE RTMRIVKI SGSNGQIFMAPIHEANVDARNTDKQDAFTYTSKYAGSLQKAKTRRVTI SPIGEVRD PGFKG
SEQ ID NO: 375
MARPAFRAPRREHVNGWTPDPHRI SKPFFILVSWHLLSRVVIDSSSGCFPGTSRDHTDKFAEWE CAVQPYRLSFDLGTNS IGWGLLNLDRQGKPREIRALGSRIFSDGRDPQDKASLAVARRLARQMR RRRDRYLTRRTRLMGALVRFGLMPADPAARKRLEVAVDPYLARERATRERLEPFEIGRALFHLN QRRGYKPVRTATKPDEEAGKVKEAVERLEAAIAAAGAPTLGAWFAWRKTRGETLRARLAGKGKE AAYPFYPARRMLEAEFDTLWAEQARHHPDLLTAEAREILRHRIFHQRPLKPPPVGRCTLYPDDG RAPRALPSAQRLRLFQELASLRVIHLDLSERPLTPAERDRIVAFVQGRPPKAGRKPGKVQKSVP FEKLRGLLELPPGTGFSLESDKRPELLGDETGARIAPAFGPGWTALPLEEQDALVELLLTEAEP ERAIAALTARWALDEATAAKLAGATLPDFHGRYGRRAVAELLPVLERETRGDPDGRVRPIRLDE AVKLLRGGKDHSDFSREGALLDALPYYGAVLERHVAFGTGNPADPEEKRVGRVANPTVHIALNQ LRHLVNAILARHGRPEEIVIELARDLKRSAEDRRREDKRQADNQKRNEERKRLILSLGERPTPR NLLKLRLWEEQGPVENRRCPYSGETI SMRMLLSEQVDIDHILPFSVSLDDSAANKVVCLREANR IKRNRSPWEAFGHDSERWAGILARAEALPKNKRWRFAPDALEKLEGEGGLRARHLNDTRHLSRL AVEYLRCVCPKVRVSPGRLTALLRRRWGIDAILAEADGPPPEVPAETLDPSPAEKNRADHRHHA LDAVVIGCIDRSMVQRVQLAAASAEREAAAREDNIRRVLEGFKEEPWDGFRAELERRARTIVVS HRPEHGIGGALHKETAYGPVDPPEEGFNLVVRKPIDGLSKDEINSVRDPRLRRALIDRLAIRRR DANDPATALAKAAEDLAAQPASRGIRRVRVLKKESNPIRVEHGGNPSGPRSGGPFHKLLLAGEV HHVDVALRADGRRWVGHWVTLFEAHGGRGADGAAAPPRLGDGERFLMRLHKGDCLKLEHKGRVR VMQVVKLEPSSNSVVVVEPHQVKTDRSKHVKI SCDQLRARGARRVTVDPLGRVRVHAPGARVGI GGDAGRTAMEPAEDIS SEQ ID NO: 376
MKRTSLRAYRLGVDLGANSLGWFVVWLDDHGQPEGLGPGGVRIFPDGRNPQSKQSNAAGRRLAR SARRRRDRYLQRRGKLMGLLVKHGLMPADEPARKRLECLDPYGLRAKALDEVLPLHHVGRALFH LNQRRGLFANRAIEQGDKDASAIKAAAGRLQTSMQACGARTLGEFLNRRHQLRATVRARSPVGG DVQARYEFYPTRAMVDAEFEAIWAAQAPHHPTMTAEAHDTIREAIFSQRAMKRPS IGKCSLDPA TSQDDVDGFRCAWSHPLAQRFRIWQDVRNLAVVETGPTSSRLGKEDQDKVARALLQTDQLSFDE IRGLLGLPSDARFNLESDRRDHLKGDATGAILSARRHFGPAWHDRSLDRQIDIVALLESALDEA AIIASLGTTHSLDEAAAQRALSALLPDGYCRLGLRAIKRVLPLMEAGRTYAEAASAAGYDHALL PGGKLSPTGYLPYYGQWLQNDVVGSDDERDTNERRWGRLPNPTVHIGIGQLRRVVNELIRWHGP PAEITVELTRDLKLSPRRLAELEREQAENQRKNDKRTSLLRKLGLPASTHNLLKLRLWDEQGDV ASECPYTGEAIGLERLVSDDVDIDHLIPFS I SWDDSAANKVVCMRYANREKGNRTPFEAFGHRQ GRPYDWADIAERAARLPRGKRWRFGPGARAQFEELGDFQARLLNETSWLARVAKQYLAAVTHPH RIHVLPGRLTALLRATWELNDLLPGSDDRAAKSRKDHRHHAIDALVAALTDQALLRRMANAHDD TRRKIEVLLPWPTFRIDLETRLKAMLVSHKPDHGLQARLHEDTAYGTVEHPETEDGANLVYRKT FVDI SEKEIDRIRDRRLRDLVRAHVAGERQQGKTLKAAVLSFAQRRDIAGHPNGIRHVRLTKS I KPDYLVPIRDKAGRIYKSYNAGENAFVDILQAESGRWIARATTVFQANQANESHDAPAAQPIMR VFKGDMLRIDHAGAEKFVKIVRLSPSNNLLYLVEHHQAGVFQTRHDDPEDSFRWLFASFDKLRE WNAELVRIDTLGQPWRRKRGLETGSEDATRIGWTRPKKWP
SEQ ID NO: 377
MERIFGFDIGTTS IGFSVIDYSSTQSAGNIQRLGVRIFPEARDPDGTPLNQQRRQKRMMRRQLR RRRIRRKALNETLHEAGFLPAYGSADWPVVMADEPYELRRRGLEEGLSAYEFGRAIYHLAQHRH FKGRELEESDTPDPDVDDEKEAANERAATLKALKNEQTTLGAWLARRPPSDRKRGIHAHRNVVA EEFERLWEVQSKFHPALKSEEMRARI SDTIFAQRPVFWRKNTLGECRFMPGEPLCPKGSWLSQQ RRMLEKLNNLAIAGGNARPLDAEERDAILSKLQQQASMSWPGVRSALKALYKQRGEPGAEKSLK FNLELGGESKLLGNALEAKLADMFGPDWPAHPRKQEIRHAVHERLWAADYGETPDKKRVI ILSE KDRKAHREAAANSFVADFGITGEQAAQLQALKLPTGWEPYS IPALNLFLAELEKGERFGALVNG PDWEGWRRTNFPHRNQPTGEILDKLPSPASKEERERI SQLRNPTVVRTQNELRKVVNNLIGLYG KPDRIRIEVGRDVGKSKREREEIQSGIRRNEKQRKKATEDLIKNGIANPSRDDVEKWILWKEGQ ERCPYTGDQIGFNALFREGRYEVEHIWPRSRSFDNSPRNKTLCRKDVNIEKGNRMPFEAFGHDE DRWSAIQIRLQGMVSAKGGTGMSPGKVKRFLAKTMPEDFAARQLNDTRYAAKQILAQLKRLWPD MGPEAPVKVEAVTGQVTAQLRKLWTLNNILADDGEKTRADHRHHAIDALTVACTHPGMTNKLSR YWQLRDDPRAEKPALTPPWDTIRADAEKAVSEIVVSHRVRKKVSGPLHKETTYGDTGTDIKTKS GTYRQFVTRKKIESLSKGELDEIRDPRIKEIVAAHVAGRGGDPKKAFPPYPCVSPGGPEIRKVR LTSKQQLNLMAQTGNGYADLGSNHHIAIYRLPDGKADFEIVSLFDASRRLAQRNPIVQRTRADG ASFVMSLAAGEAIMIPEGSKKGIWIVQGVWASGQVVLERDTDADHSTTTRPMPNPILKDDAKKV SIDPIGRVRPSND
SEQ ID NO: 378
MNKRILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEGVKIEKGIESSKAAERSGYKAIR KQYFRRRLRKIQVLKVLVKYHLCPYLSDDDLRQWHLQKQYPKSDELMLWQRTSDEEGKNPYYDR HRCLHEKLDLTVEADRYTLGRALYHLTQRRGFLSNRLDTSADNKEDGVVKSGI SQLSTEMEEAG CEYLGDYFYKLYDAQGNKVRIRQRYTDRNKHYQHEFDAICEKQELSSELIEDLQRAIFFQLPLK SQRHGVGRCTFERGKPRCADSHPDYEEFRMLCFVNNIQVKGPHDLELRPLTYEEREKIEPLFFR KSKPNFDFEDIAKALAGKKNYAWIHDKEERAYKFNYRMTQGVPGCPTIAQLKS IFGDDWKTGIA ETYTLIQKKNGSKSLQEMVDDVWNVLYSFSSVEKLKEFAHHKLQLDEESAEKFAKIKLSHSFAA LSLKAIRKFLPFLRKGMYYTHASFFANIPTIVGKEIWNKEQNRKYIMENVGELVFNYQPKHREV QGTIEMLIKDFLANNFELPAGATDKLYHPSMIETYPNAQRNEFGILQLGSPRTNAIRNPMAMRS LHILRRVVNQLLKES I IDENTEVHVEYARELNDANKRRAIADRQKEQDKQHKKYGDEIRKLYKE ETGKDIEPTQTDVLKFQLWEEQNHHCLYTGEQIGITDFIGSNPKFDIEHTIPQSVGGDSTQMNL TLCDNRFNREVKKAKLPTELANHEEILTRIEPWKNKYEQLVKERDKQRTFAGMDKAVKDIRIQK RHKLQMEIDYWRGKYERFTMTEVPEGFSRRQGTGIGLI SRYAGLYLKSLFHQADSRNKSNVYVV KGVATAEFRKMWGLQSEYEKKCRDNHSHHCMDAITIACIGKREYDLMAEYYRMEETFKQGRGSK PKFSKPWATFTEDVL IYKNLLVVHDTPNNMPKHTKKYVQTS IGKVLAQGDTARGSLHLDTYYG AIERDGEIRYVVRRPLSSFTKPEELENIVDETVKRTIKEAIADKNFKQAIAEPIYMNEEKGILI KKVRCFAKSVKQPINIRQHRDLSKKEYKQQYHVMNENNYLLAIYEGLVKNKVVREFEIVSYIEA AKYYKRSQDRNIFSS IVPTHSTKYGLPLKTKLLMGQLVLMFEENPDEIQVDNTKDLVKRLYKVV GIEKDGRIKFKYHQEARKEGLPIFSTPYKNNDDYAPIFRQS INNINILVDGIDFTIDILGKVTL KE
SEQ ID NO: 379
MNYKMGLDIGIASVGWAVINLDLKRIEDLGVRIFDKAEHPQNGESLALPRRIARSARRRLRRRK HRLERIRRLLVSENVLTKEEMNLLFKQKKQIDVWQLRVDALERKLNNDELARVLLHLAKRRGFK SNRKSERNSKESSEFLKNIEENQS ILAQYRSVGEMIVKDSKFAYHKRNKLDSYSNMIARDDLER EIKLIFEKQREFNNPVCTERLEEKYLNIWSSQRPFASKEDIEKKVGFCTFEPKEKRAPKATYTF QSFIVWEHINKLRLVSPDETRALTEIERNLLYKQAFSKNKMTYYDIRKLLNLSDDIHFKGLLYD PKSSLKQIENIRFLELDSYHKIRKCIENVYGKDGIRMFNETDIDTFGYALTIFKDDEDIVAYLQ NEYITKNGKRVSNLANKVYDKSLIDELLNLSFSKFAHLSMKAIR ILPYMEQGEIYSKACELAG YNFTGPKKKEKALLLPVIPNIANPVVMRALTQSRKVVNAI IKKYGSPVS IHIELARDLSHSFDE RKKIQKDQTENRKKNETAIKQLIEYELTKNPTGLDIVKFKLWSEQQGRCMYSLKPIELERLLEP GYVEVDHILPYSRSLDDSYANKVLVLTKENREKGNHTPVEYLGLGSERWKKFEKFVLANKQFSK KKKQNLLRLRYEETEEKEFKERNLNDTRYI SKFFANFIKEHLKFADGDGGQKVYTINGKITAHL RSRWDFNKNREESDLHHAVDAVIVACATQGMIKKITEFYKAREQNKESAKKKEPIFPQPWPHFA DELKARLSKFPQES IEAFALGNYDRKKLESLRPVFVSRMPKRSVTGAAHQETLRRCVGIDEQSG KIQTAVKTKLSDIKLDKDGHFPMYQKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGEP GPVIRTVKI IDTKNKVVHLDGSKTVAYNS IVRTDVFEKDGKYYCVPVYTMDIMKGTLPNKAIE ANKPYSEWKEMTEEYTFQFSLFPNDLVRIVLPREKTIKTSTNEEI I IKDIFAYYKTIDSATGGL ELI SHDRNFSLRGVGSKTLKRFEKYQVDVLG IHKVKGEKRVGLAAPTNQKKGKTVDSLQSVSD
SEQ ID NO: 380
MRRLGLDLGTNS IGWCLLDLGDDGEPVS IFRTGARIFSDGRDPKSLGSLKATRREARLTRRRRD RFIQRQKNLINALVKYGLMPADEIQRQALAYKDPYPIRKKALDEAIDPYEMGRAIFHINQRRGF KSNRKSADNEAGVVKQS IADLEMKLGEAGARTIGEFLADRQATNDTVRARRLSGTNALYEFYPD RYMLEQEFDTLWAKQAAFNPSLYIEAARERLKEIVFFQRKLKPQEVGRCIFLSDEDRI SKALPS FQRFRIYQELSNLAWIDHDGVAHRITASLALRDHLFDELEHKKKLTFKAMRAILRKQGVVDYPV GFNLESDNRDHLIGNLTSCIMRDAKKMIGSAWDRLDEEEQDSFILMLQDDQKGDDEVRS ILTQQ YGLSDDVAEDCLDVRLPDGHGSLSKKAIDRILPVLRDQGLIYYDAVKEAGLGEANLYDPYAALS DKLDYYGKALAGHVMGASGKFEDSDEKRYGTI SNPTVHIALNQVRAVVNELIRLHGKPDEVVIE IGRDLPMGADGKRELERFQKEGRAKNERARDELKKLGHIDSRESRQKFQLWEQLAKEPVDRCCP FTGKMMS I SDLFSDKVEIEHLLPFSLTLDDSMANKTVCFRQANRDKGNRAPFDAFGNSPAGYDW QEILGRSQNLPYAKRWRFLPDAMKRFEADGGFLERQLNDTRYI SRYTTEYI STI IPKNKIWVVT GRLTSLLRGFWGLNS ILRGHNTDDGTPAKKSRDDHRHHAIDAIVVGMTSRGLLQKVSKAARRSE DLDLTRLFEGRIDPWDGFRDEVKKHIDAI IVSHRPRKKSQGALHNDTAYGIVEHAENGASTVVH RVPITSLGKQSDIEKVRDPLIKSALLNETAGLSGKSFENAVQKWCADNS IKSLRIVETVS I IPI TDKEGVAYKGYKGDGNAYMDIYQDPTSSKWKGEIVSRFDANQKGFIPSWQSQFPTARLIMRLRI NDLLKLQDGEIEEIYRVQRLSGSKILMAPHTEANVDARDRDKNDTFKLTSKSPGKLQSASARKV HISPTGLIREG
SEQ ID NO: 381
MK ILGLDLGLSS IGWSVIRENSEEQELVAMGSRVVSLTAAELSSFTQGNGVS INSQRTQKRTQ RKGYDRYQLRRTLLRNKLDTLGMLPDDSLSYLPKLQLWGLRAKAVTQRIELNELGRVLLHLNQK RGYKS IKSDFSGDKKITDYVKTVKTRYDELKEMRLTIGELFFRRLTENAFFRCKEQVYPRQAYV EEFDCIMNCQRKFYPDILTDETIRCIRDEI IYYQRPLKSCKYLVSRCEFEKRFYLNAAGKKTEA GPKVSPRTSPLFQVCRLWES IN IVVKDRRNEIVFI SAEQRAALFDFLNTHEKLKGSDLLKLLG LSKTYGYRLGEQFKTGIQGNKTRVEIERALGNYPDKKRLLQFNLQEESSSMVNTETGEI IPMI S LSFEQEPLYRLWHVLYS IDDREQLQSVLRQKFGIDDDEVLERLSAIDLVKAGFGNKSSKAIRRI LPFLQLGMNYAEACEAAGYNHSNNYTKAENEARALLDRLPAIKKNELRQPVVEKILNQMVNVVN ALMEKYGRFDEIRVELARELKQSKEERSNTYKS INKNQRENEQIAKRIVEYGVPTRSRIQKYKM WEESKHCCIYCGQPVDVGDFLRGFDVEVEHI IPKSLYFDDSFANKVCSCRSCNKEKNNRTAYDY MKSKGEKALSDYVERVNTMYTNNQI SKTKWQNLLTPVDKI S IDFIDRQLRESQYIARKAKEILT SICYNVTATSGSVTSFLRHVWGWDTVLHDLNFDRYKKVGLTEVIEVNHRGSVIRREQIKDWSKR FDHRHHAIDALTIACTKQAYIQRLNNLRAEEGPDFNKMSLERYIQSQPHFSVAQVREAVDRILV SFRAGKRAVTPGKRYIRKNRKRI SVQSVLIPRGALSEESVYGVIHVWEKDEQGHVIQKQRAVMK YPITS INREMLDKEKVVDKRIHRILSGRLAQYNDNPKEAFAKPVYIDKECRIPIRTVRCFAKPA INTLVPLKKDDKGNPVAWVNPGNNHHVAIYRDEDGKYKERTVTFWEAVDRCRVGIPAIVTQPDT IWD ILQRNDI SENVLESLPDVKWQFVLSLQQNEMFILGMNEEDYRYAMDQQDYALLNKYLYRV QKLSKSDYSFRYHTETSVEDKYDGKPNLKLSMQMGKLKRVS IKSLLGLNPHKVHI SVLGEIKEI S
SEQ ID NO: 382
MAEKQHRWGLDIGTNS IGWAVIALIEGRPAGLVATGSRIFSDGRNPKDGSSLAVERRGPRQMRR RRDRYLRRRDRFMQALINVGLMPGDAAARKALVTENPYVLRQRGLDQALTLPEFGRALFHLNQR RGFQSNRKTDRATAKESGKVKNAIAAFRAGMGNARTVGEALARRLEDGRPVRARMVGQGKDEHY ELYIAREWIAQEFDALWASQQRFHAEVLADAARDRLRAILLFQRKLLPVPVGKCFLEPNQPRVA AALPSAQRFRLMQELNHLRVMTLADKRERPLSFQERNDLLAQLVARPKCGFDMLRKIVFGANKE AYRFTIESERRKELKGCDTAAKLAKVNALGTRWQALSLDEQDRLVCLLLDGENDAVLADALREH YGLTDAQIDTLLGLSFEDGHMRLGRSALLRVLDALESGRDEQGLPLSYDKAVVAAGYPAHTADL ENGERDALPYYGELLWRYTQDAPTAKNDAERKFGKIANPTVHIGLNQLRKLVNALIQRYGKPAQ IVVELARNLKAGLEEKERIKKQQTANLERNERIRQKLQDAGVPDNRENRLRMRLFEELGQGNGL GTPCIYSGRQI SLQRLFSNDVQVDHILPFSKTLDDSFANKVLAQHDANRYKGNRGPFEAFGANR DGYAWDDIRARAAVLPRNKRNRFAETAMQDWLHNETDFLARQLTDTAYLSRVARQYLTAICSKD DVYVSPGRLTAMLRAKWGLNRVLDGVMEEQGRPAVKNRDDHRHHAIDAVVIGATDRAMLQQVAT LAARAREQDAERLIGDMPTPWPNFLEDVRAAVARCVVSHKPDHGPEGGLHNDTAYGIVAGPFED GRYRVRHRVSLFDLKPGDLSNVRCDAPLQAELEPIFEQDDARAREVALTALAERYRQRKVWLEE LMSVLPIRPRGEDGKTLPDSAPYKAYKGDSNYCYELFINERGRWDGELI STFRANQAAYRRFRN DPARFRRYTAGGRPLLMRLCINDYIAVGTAAERTIFRVVKMSENKITLAEHFEGGTLKQRDADK DDPFKYLTKSPGALRDLGARRIFVDLIGRVLDPGIKGD
SEQ ID NO: 383 MIERILGVDLGI SSLGWAIVEYDKDDEAANRI IDCGVRLFTAAETPKKKESPNKARREARGIRR VLNRRRVRMNMIKKLFLRAGLIQDVDLDGEGGMFYSKANRADVWELRHDGLYRLLKGDELARVL IHIAKHRGYKFIGDDEADEESGKVKKAGVVLRQNFEAAGCRTVGEWLWRERGANGKKRNKHGDY EI S IHRDLLVEEVEAIFVAQQEMRSTIATDALKAAYREIAFFVRPMQRIEKMVGHCTYFPEERR APKSAPTAEKFIAI SKFFSTVI IDNEGWEQKI IERKTLEELLDFAVSREKVEFRHLRKFLDLSD NEIFKGLHYKGKPKTAKKREATLFDPNEPTELEFDKVEAEKKAWI SLRGAAKLREALGNEFYGR FVALGKHADEATKILTYYKDEGQKRRELTKLPLEAEMVERLVKIGFSDFLKLSLKAIRDILPAM ESGARYDEAVLMLGVPHKEKSAILPPLNKTDIDILNPTVIRAFAQFRKVANALVRKYGAFDRVH FELAREINTKGEIEDIKESQRKNEKERKEAADWIAETSFQVPLTRKNILKKRLYIQQDGRCAYT GDVIELERLFDEGYCEIDHILPRSRSADDSFANKVLCLARANQQKTDRTPYEWFGHDAARWNAF ETRTSAPSNRVRTGKGKIDRLLKKNFDENSEMAFKDRNLNDTRYMARAIKTYCEQYWVFKNSHT KAPVQVRSGKLTSVLRYQWGLESKDRESHTHHAVDAI I IAFSTQGMVQKLSEYYRFKETHREKE RPKLAVPLANFRDAVEEATRIENTETVKEGVEVKRLLI SRPPRARVTGQAHEQTAKPYPRIKQV KNKKKWRLAPIDEEKFESFKADRVASANQKNFYETSTIPRVDVYHKKGKFHLVPIYLHEMVLNE LPNLSLGTNPEAMDENFFKFS IFKDDLI S IQTQGTPKKPAKI IMGYFKNMHGANMVLSS INNSP CEGFTCTPVSMDKKHKDKCKLCPEENRIAGRCLQGFLDYWSQEGLRPPRKEFECDQGVKFALDV KKYQIDPLGYYYEVKQEKRLGTIPQMRSAKKLVKK
SEQ ID NO: 384
MNNS IKSKPEVTIGLDLGVGSVGWAIVDNET I IHHLGSRLFSQAKTAEDRRSFRGVRRLIRRR KYKLKRFVNLIWKYNSYFGFKNKEDILNNYQEQQKLHNTVLNLKSEALNAKIDPKALSWILHDY LKNRGHFYEDNRDFNVYPTKELAKYFDKYGYYKGI IDSKEDNDNKLEEELTKYKFSNKHWLEEV KKVLSNQTGLPEKFKEEYESLFSYVRNYSEGPGS INSVSPYGIYHLDEKEGKVVQKYN IWDKT IGKCNIFPDEYRAPKNSPIAMIFNEINELSTIRSYS IYLTGWFINQEFKKAYLNKLLDLLIKTN GEKPIDARQFKKLREETIAES IGKETLKDVENEEKLEKEDHKWKLKGLKLNTNGKIQYNDLSSL AKFVHKLKQHLKLDFLLEDQYATLDKINFLQSLFVYLGKHLRYSNRVDSANLKEFSDSNKLFER ILQKQKDGLFKLFEQTDKDDEKILAQTHSLSTKAMLLAITRMTNLDNDEDNQKNNDKGWNFEAI KNFDQKFIDITKKNNNLSLKQNKRYLDDRFINDAILSPGVKRILREATKVFNAILKQFSEEYDV TKVVIELARELSEEKELENTKNYKKLIKKNGDKI SEGLKALGI SEDEIKDILKSPTKSYKFLLW LQQDHIDPYSLKEIAFDDIFTKTEKFEIDHI IPYS I SFDDSSSNKLLVLAESNQAKSNQTPYEF ISSGNAGIKWEDYEAYCRKFKDGDSSLLDSTQRSKKFAKMMKTDTSSKYDIGFLARNLNDTRYA TIVFRDALEDYANNHLVEDKPMFKVVCINGSVTSFLRKNFDDSSYAKKDRDK IHHAVDAS IIS IFSNETKTLFNQLTQFADYKLFKNTDGSWKKIDPKTGVVTEVTDENWKQIRVRNQVSEIAKVIE KYIQDS IERKARYSRKIENKT I SLFNDTVYSAKKVGYEDQIKRKNLKTLDIHESAKENKNSK VKRQFVYRKLVNVSLLNNDKLADLFAEKEDILMYRANPWVINLAEQIFNEYTENKKIKSQNVFE KYMLDLTKEFPEKFSEFLVKSMLRNKTAI IYDDKK IVHRIKRLKMLSSELKENKLSNVI IRSK NQSGTKLSYQDTINSLALMIMRS IDPTAKKQYIRVPLNTLNLHLGDHDFDLHNMDAYLKKPKFV KYLKANEIGDEYKPWRVLTSGTLLIHKKDKKLMYISSFQNLNDVIEIKNLIETEYKENDDSDSK KKKKANRFLMTLSTILNDYILLDAKDNFDILGLSKNRIDEILNSKLGLDKIVK
SEQ ID NO: 385
MGGSEVGTVPVTWRLGVDVGERS IGLAAVSYEEDKPKEILAAVSWIHDGGVGDERSGASRLALR GMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDAWLARKRLAEEYVVDETERRRLL GYAVSHMARHRGWRNPWTTIKDLKNLPQPSDSWERTRESLEARYSVSLEPGTVGQWAGYLLQRA PGIRLNPTQQSAGRRAELSNATAFETRLRQEDVLWELRCIADVQGLPEDVVSNVIDAVFCQKRP SVPAERIGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEERNAVIEALLAQ TERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAPFDETSARIAEFIAKNRRKIPTF AQWWQEQDRTSRSDLVAALADNS IAGEEEQELLVHLPDAELEALEGLALPSGRVAYSRLTLSGL TRVMRDDGVDVHNARKTCFGVDDNWRPPLPALHEATGHPVVDRNLAILRKFLSSATMRWGPPQS IVVELARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPSPADLVRARLLELYDCHCM YCGAPI SWENSELDHIVPRTDGGSNRHENLAITCGACNKEKGRRPFASWAETSNRVQLRDVIDR VQKLKYSGNMYWTRDEFSRYKKSVVARLKRRTSDPEVIQS IESTGYAAVALRDRLLSYGEKNGV AQVAVFRGGVTAEARRWLDI S IERLFSRVAIFAQSTSTKRLDRRHHAVDAVVLTTLTPGVAKTL ADARSRRVSAEFWRRPSDVNRHSTEEPQSPAYRQWKESCSGLGDLLI STAARDS IAVAAPLRLR PTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVYAAFLALTDPGGRFLKVSPSEDVLPADEN RHIVLSDRVLGPRDRVKLFPDDRGS IRVRGGAAYIASFHHARVFRWGSSHSPSFALLRVSLADL AVAGLLRDGVDVFTAELPPWTPAWRYAS IALVKAVESGDAKQVGWLVPGDELDFGPEGVTTAAG DLSMFLKYFPERHWVVTGFEDDKRINLKPAFLSAEQAEVLRTERSDRPDTLTEAGEILAQFFPR CWRATVAKVLCHPGLTVIRRTALGQPRWRRGHLPYSWRPWSADPWSGGTP
SEQ ID NO: 386
MHNKKNITIGFDLGIAS IGWAI IDSTTSKILDWGTRTFEERKTANERRAFRSTRRNIRRKAYRN QRFINLILKYKDLFELKNI SDIQRANKKDTENYEKI I SFFTEIYKKCAAKHS ILEVKVKALDS KIEKLDLIWILHDYLENRGFFYDLEEENVADKYEGIEHPS ILLYDFFKKNGFFKSNSS IPKDLG GYSFSNLQWVNEIKKLFEVQEINPEFSEKFLNLFTSVRDYAKGPGSEHSASEYGIFQKDEKGKV FKKYDNIWDKTIGKCSFFVEENRSPVNYPSYEIFNLLNQLINLSTDLKTTNKKIWQLSSNDRNE LLDELLKVKEKAKI I S I SLKKNEIKKI ILKDFGFEKSDIDDQDTIEGRKI IKEEPTTKLEVTKH LLATIYSHSSDSNWININNILEFLPYLDAICI ILDREKSRGQDEVLKKLTEKNIFEVLKIDREK QLDFVKS IFSNTKFNFKKIGNFSLKAIREFLPKMFEQNKNSEYLKWKDEEIRRKWEEQKSKLGK TDKKTKYLNPRIFQDEI I SPGTKNTFEQAVLVLNQI IKKYSKENI IDAI I IESPREKNDKKTIE EIKKRNKKGKGKTLEKLFQILNLENKGYKLSDLETKPAKLLDRLRFYHQQDGIDLYTLDKINID QLINGSQKYEIEHI IPYSMSYDNSQANKILTEKAENLKKGKLIASEYIKRNGDEFYNKYYEKAK ELFINKYKKNKKLDSYVDLDEDSAKNRFRFLTLQDYDEFQVEFLARNLNDTRYSTKLFYHALVE HFENNEFFTYIDENSSKHKVKI STIKGHVTKYFRAKPVQKNNGPNENLNNNKPEKIEKNRENNE HHAVDAAIVAI IGNKNPQIANLLTLADNKTDKKFLLHDENYKE IETGELVKIPKFEVDKLAKV EDLKKI IQEKYEEAKKHTAIKFSRKTRTILNGGLSDETLYGFKYDEKEDKYFKI IKKKLVTSKN EELKKYFENPFGKKADGKSEYTVLMAQSHLSEFNKLKEIFEKYNGFSNKTGNAFVEYMNDLALK EPTLKAEIESAKSVEKLLYYNFKPSDQFTYHDNINNKSFKRFYKNIRI IEYKS IPIKFKILSKH DGGKSFKDTLFSLYSLVYKVYENGKESYKS IPVTSQMRNFGIDEFDFLDENLYNKEKLDIYKSD FAKPIPVNCKPVFVLKKGS ILKKKSLDIDDFKETKETEEGNYYFI STI SKRFNRDTAYGLKPLK LSVVKPVAEPSTNPIFKEYIPIHLDELGNEYPVKIKEHTDDEKLMCTIK
Nucleic Acids Encoding Cas9 Molecules
Nucleic acids encoding the Cas9 molecules or Cas9 polypeptides, e.g., an eaCas9 molecule or eaCas9 polypeptides are provided herein.
Exemplary nucleic acids encoding Cas9 molecules or Cas9 polypeptides are described in Cong et al., SCIENCE 2013, 399(6121):819-823; Wang et al., CELL 2013, 153(4):910-918; Mali et al., SCIENCE 2013, 399(6121):823-826; Jinek et al., SCIENCE 2012, 337(6096):816-821. Another exemplary nucleic acid encoding a Cas9 molecule or Cas9 polypeptide is shown in Fig. 8. In an embodiment, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide can be a synthetic nucleic acid sequence. For example, the synthetic nucleic acid molecule can be chemically modified, e.g., as described in Section VIII. In an embodiment, the Cas9 mRNA has one or more (e.g., all of the following properties: it is capped, polyadenylated, substituted with 5- methylcytidine and/or pseudouridine.
In addition, or alternatively, the synthetic nucleic acid sequence can be codon optimized, e.g., at least one non-common codon or less-common codon has been replaced by a common codon. For example, the synthetic nucleic acid can direct the synthesis of an optimized messenger mRNA, e.g., optimized for expression in a mammalian expression system, e.g., described herein.
In addition, or alternatively, a nucleic acid encoding a Cas9 molecule or Cas9
polypeptide may comprise a nuclear localization sequence (NLS). Nuclear localization sequences are known in the art.
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. pyogenes.
ATGGATAAAA AGTACAGCAT CGGGCTGGAC ATCGGTACAA ACTCAGTGGG GTGGGCCGTG ATTACGGACG AGTACAAGGT ACCCTCCAAA AAATTTAAAG TGCTGGGTAA CACGGACAGA CACTCTATAA AGAAAAATCT TATTGGAGCC TTGCTGTTCG ACTCAGGCGA GACAGCCGAA GCCACAAGGT TGAAGCGGAC CGCCAGGAGG CGGTATACCA GGAGAAAGAA CCGCATATGC TACCTGCAAG AAATCTTCAG TAACGAGATG GCAAAGGTTG ACGATAGCTT TTTCCATCGC CTGGAAGAAT CCTTTCTTGT TGAGGAAGAC AAGAAGCACG AACGGCACCC CATCTTTGGC AATATTGTCG ACGAAGTGGC ATATCACGAA AAGTACCCGA CTATCTACCA CCTCAGGAAG AAGCTGGTGG ACTCTACCGA TAAGGCGGAC CTCAGACTTA TTTATTTGGC ACTCGCCCAC AT GAT T AAA T TTAGAGGACA TTTCTTGATC GAGGGCGACC TGAACCCGGA CAACAGTGAC GTCGATAAGC TGTTCATCCA ACTTGTGCAG ACCTACAATC AACTGTTCGA AGAAAACCCT ATAAATGCTT CAGGAGTCGA CGCTAAAGCA ATCCTGTCCG CGCGCCTCTC AAAATCTAGA AGACTTGAGA ATCTGATTGC TCAGTTGCCC GGGGAAAAGA AAAATGGATT GTTTGGCAAC CTGATCGCCC TCAGTCTCGG ACTGACCCCA AATTTCAAAA GTAACTTCGA CCTGGCCGAA GACGCTAAGC TCCAGCTGTC CAAGGACACA TACGATGACG ACCTCGACAA TCTGCTGGCC CAGATTGGGG ATCAGTACGC CGATCTCTTT TTGGCAGCAA AGAACCTGTC CGACGCCATC CTGTTGAGCG ATATCTTGAG AGTGAACACC GAAATTACTA AAGCACCCCT TAGCGCATCT ATGATCAAGC GGTACGACGA GCATCATCAG GATCTGACCC TGCTGAAGGC TCTTGTGAGG CAACAGCTCC CCGAAAAATA CAAGGAAATC TTCTTTGACC AGAGCAAAAA CGGCTACGCT GGCTATATAG ATGGTGGGGC CAGTCAGGAG GAATTCTATA AATTCATCAA GCCCATTCTC GAGAAAATGG ACGGCACAGA GGAGTTGCTG GTCAAACTTA ACAGGGAGGA CCTGCTGCGG AAGCAGCGGA CCTTTGACAA CGGGTCTATC CCCCACCAGA TTCATCTGGG CGAACTGCAC GCAATCCTGA GGAGGCAGGA GGATTTTTAT CCTTTTCTTA AAGATAACCG CGAGAAAATA GAAAAGATTC TTACATTCAG GATCCCGTAC TACGTGGGAC CTCTCGCCCG GGGCAATTCA CGGTTTGCCT GGATGACAAG GAAGTCAGAG GAGACTATTA CACCTTGGAA CTTCGAAGAA GTGGTGGACA AGGGTGCATC TGCCCAGTCT TTCATCGAGC GGATGACAAA TTTTGACAAG AACCTCCCTA ATGAGAAGGT GCTGCCCAAA CATTCTCTGC TCTACGAGTA CTTTACCGTC TACAATGAAC TGACTAAAGT CAAGTACGTC ACCGAGGGAA TGAGGAAGCC GGCATTCCTT AGTGGAGAAC AGAAGAAGGC GATTGTAGAC CTGTTGTTCA AGACCAACAG GAAGGTGACT GTGAAGCAAC TTAAAGAAGA CTACTTTAAG AAGATCGAAT GTTTTGACAG TGTGGAAATT TCAGGGGTTG AAGACCGCTT CAATGCGTCA TTGGGGACTT ACCATGATCT TCTCAAGATC ATAAAGGACA AAGACTTCCT GGACAACGAA GAAAATGAGG ATATTCTCGA AGACATCGTC CTCACCCTGA CCCTGTTCGA AGACAGGGAA ATGATAGAAG AGCGCTTGAA AACCTATGCC CACCTCTTCG ACGATAAAGT TATGAAGCAG CTGAAGCGCA GGAGATACAC AGGATGGGGA AGATTGTCAA GGAAGCTGAT CAATGGAATT AGGGATAAAC AGAGTGGCAA GACCATACTG GATTTCCTCA AATCTGATGG CTTCGCCAAT AGGAACTTCA TGCAACTGAT TCACGATGAC TCTCTTACCT TCAAGGAGGA CATTCAAAAG GCTCAGGTGA GCGGGCAGGG AGACTCCCTT CATGAACACA TCGCGAATTT GGCAGGTTCC CCCGCTATTA AAAAGGGCAT CCTTCAAACT GTCAAGGTGG TGGATGAATT GGTCAAGGTA ATGGGCAGAC ATAAGCCAGA AAATATTGTG ATCGAGATGG CCCGCGAAAA CCAGACCACA CAGAAGGGCC AGAAAAATAG TAGAGAGCGG ATGAAGAGGA TCGAGGAGGG CATCAAAGAG CTGGGATCTC AGATTCTCAA AGAACACCCC GTAGAAAACA CACAGCTGCA GAACGAAAAA TTGTACTTGT ACTATCTGCA GAACGGCAGA GACATGTACG TCGACCAAGA ACTTGATATT AATAGACTGT CCGACTATGA CGTAGACCAT ATCGTGCCCC AGTCCTTCCT GAAGGACGAC TCCATTGATA ACAAAGTCTT GACAAGAAGC GACAAGAACA GGGGTAAAAG TGATAATGTG CCTAGCGAGG AGGTGGTGAA AAAAATGAAG AACTACTGGC GACAGCTGCT TAATGCAAAG CTCATTACAC AACGGAAGTT CGATAATCTG ACGAAAGCAG AGAGAGGTGG CTTGTCTGAG TTGGACAAGG CAGGGTTTAT TAAGCGGCAG CTGGTGGAAA CTAGGCAGAT CACAAAGCAC GTGGCGCAGA TTTTGGACAG CCGGATGAAC ACAAAATACG ACGAAAATGA TAAACTGATA CGAGAGGTCA AAGTTATCAC GCTGAAAAGC AAGCTGGTGT CCGATTTTCG GAAAGACTTC CAGTTCTACA AAGTTCGCGA GATTAATAAC TACCATCATG CTCACGATGC GTACCTGAAC GCTGTTGTCG GGACCGCCTT GATAAAGAAG TACCCAAAGC TGGAATCCGA GTTCGTATAC GGGGATTACA AAGTGTACGA TGTGAGGAAA ATGATAGCCA AGTCCGAGCA GGAGATTGGA AAGGCCACAG CTAAGTACTT CTTTTATTCT AACATCATGA ATTTTTTTAA GACGGAAATT ACCCTGGCCA ACGGAGAGAT CAGAAAGCGG CCCCTTATAG AGACAAATGG TGAAACAGGT GAAATCGTCT GGGATAAGGG CAGGGATTTC GCTACTGTGA GGAAGGTGCT GAGTATGCCA CAGGTAAATA TCGTGAAAAA AACCGAAGTA CAGACCGGAG GATTTTCCAA GGAAAGCATT TTGCCTAAAA GAAACTCAGA CAAGCTCATC GCCCGCAAGA AAGATTGGGA CCCTAAGAAA TACGGGGGAT TTGACTCACC CACCGTAGCC TATTCTGTGC TGGTGGTAGC TAAGGTGGAA AAAGGAAAGT CTAAGAAGCT GAAGTCCGTG AAGGAACTCT TGGGAATCAC TATCATGGAA AGATCATCCT TTGAAAAGAA CCCTATCGAT TTCCTGGAGG
CTAAGGGTTA CAAGGAGGTC AAGAAAGACC TCATCATTAA ACTGCCAAAA
TACTCTCTCT TCGAGCTGGA AAATGGCAGG AAGAGAATGT TGGCCAGCGC
CGGAGAGCTG CAAAAGGGAA ACGAGCTTGC TCTGCCCTCC AAATATGTTA
ATTTTCTCTA TCTCGCTTCC CACTATGAAA AGCTGAAAGG GTCTCCCGAA
GATAACGAGC AGAAGCAGCT GTTCGTCGAA CAGCACAAGC ACTATCTGGA
TGAAATAATC GAACAAATAA GCGAGTTCAG CAAAAGGGTT ATCCTGGCGG
ATGCTAATTT GGACAAAGTA CTGTCTGCTT ATAACAAGCA CCGGGATAAG
CCTATTAGGG AACAAGCCGA GAATATAATT CACCTCTTTA CACTCACGAA
TCTCGGAGCC CCCGCCGCCT TCAAATACTT TGATACGACT ATCGACCGGA
AACGGTATAC CAGTACCAAA GAGGTCCTCG ATGCCACCCT CATCCACCAG
TCAATTACTG GCCTGTACGA AACACGGATC GACCTCTCTC AACTGGGCGG
CGACTAG
(SEQ ID NO: 22)
Provided below is the corresponding amino acid sequence of a S. pyogenes Cas9 molecule.
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD*
(SEQ ID NO: 23)
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of N. meningitidis. ATGGCCGCCT TCAAGCCCAACCCCATCAACTACATCCTGGGCCTGGACATCGGCATCGCCAGCG TGGGCTGGGCCATGGTGGAGATCGACGAGGACGAGAACCCCATCTGCCTGATCGACCTGGGTGT GCGCGTGT TCGAGCGCGCTGAGGTGCCCAAGACTGGTGACAGTCTGGCTATGGCTCGCCGGCT T GCTCGCTCTGT TCGGCGCCT TACTCGCCGGCGCGCTCACCGCCT TCTGCGCGCTCGCCGCCTGC TGAAGCGCGAGGGTGTGCTGCAGGCTGCCGACT TCGACGAGAACGGCCTGATCAAGAGCCTGCC CAACACTCCT TGGCAGCTGCGCGCTGCCGCTCTGGACCGCAAGCTGACTCCTCTGGAGTGGAGC GCCGTGCTGCTGCACCTGATCAAGCACCGCGGCTACCTGAGCCAGCGCAAGAACGAGGGCGAGA CCGCCGACAAGGAGCTGGGTGCTCTGCTGAAGGGCGTGGCCGACAACGCCCACGCCCTGCAGAC TGGTGACT TCCGCACTCCTGCTGAGCTGGCCCTGAACAAGT TCGAGAAGGAGAGCGGCCACATC CGCAACCAGCGCGGCGACTACAGCCACACCT TCAGCCGCAAGGACCTGCAGGCCGAGCTGATCC TGCTGT TCGAGAAGCAGAAGGAGT TCGGCAACCCCCACGTGAGCGGCGGCCTGAAGGAGGGCAT CGAGACCCTGCTGATGACCCAGCGCCCCGCCCTGAGCGGCGACGCCGTGCAGAAGATGCTGGGC CACTGCACCT TCGAGCCAGCCGAGCCCAAGGCCGCCAAGAACACCTACACCGCCGAGCGCT TCA TCTGGCTGACCAAGCTGAACAACCTGCGCATCCTGGAGCAGGGCAGCGAGCGCCCCCTGACCGA CACCGAGCGCGCCACCCTGATGGACGAGCCCTACCGCAAGAGCAAGCTGACCTACGCCCAGGCC CGCAAGCTGCTGGGTCTGGAGGACACCGCCT TCT TCAAGGGCCTGCGCTACGGCAAGGACAACG CCGAGGCCAGCACCCTGATGGAGATGAAGGCCTACCACGCCATCAGCCGCGCCCTGGAGAAGGA GGGCCTGAAGGACAAGAAGAGTCCTCTGAACCTGAGCCCCGAGCTGCAGGACGAGATCGGCACC GCCT TCAGCCTGT TCAAGACCGACGAGGACATCACCGGCCGCCTGAAGGACCGCATCCAGCCCG AGATCCTGGAGGCCCTGCTGAAGCACATCAGCT TCGACAAGT TCGTGCAGATCAGCCTGAAGGC CCTGCGCCGCATCGTGCCCCTGATGGAGCAGGGCAAGCGCTACGACGAGGCCTGCGCCGAGATC TACGGCGACCACTACGGCAAGAAGAACACCGAGGAGAAGATCTACCTGCCTCCTATCCCCGCCG ACGAGATCCGCAACCCCGTGGTGCTGCGCGCCCTGAGCCAGGCCCGCAAGGTGATCAACGGCGT GGTGCGCCGCTACGGCAGCCCCGCCCGCATCCACATCGAGACCGCCCGCGAGGTGGGCAAGAGC T TCAAGGACCGCAAGGAGATCGAGAAGCGCCAGGAGGAGAACCGCAAGGACCGCGAGAAGGCCG CCGCCAAGT TCCGCGAGTACT TCCCCAACT TCGTGGGCGAGCCCAAGAGCAAGGACATCCTGAA GCTGCGCCTGTACGAGCAGCAGCACGGCAAGTGCCTGTACAGCGGCAAGGAGATCAACCTGGGC CGCCTGAACGAGAAGGGCTACGTGGAGATCGACCACGCCCTGCCCT TCAGCCGCACCTGGGACG ACAGCT TCAACAACAAGGTGCTGGTGCTGGGCAGCGAGAACCAGAACAAGGGCAACCAGACCCC CTACGAGTACT TCAACGGCAAGGACAACAGCCGCGAGTGGCAGGAGT TCAAGGCCCGCGTGGAG ACCAGCCGCT TCCCCCGCAGCAAGAAGCAGCGCATCCTGCTGCAGAAGT TCGACGAGGACGGCT TCAAGGAGCGCAACCTGAACGACACCCGCTACGTGAACCGCT TCCTGTGCCAGT TCGTGGCCGA CCGCATGCGCCTGACCGGCAAGGGCAAGAAGCGCGTGT TCGCCAGCAACGGCCAGATCACCAAC CTGCTGCGCGGCT TCTGGGGCCTGCGCAAGGTGCGCGCCGAGAACGACCGCCACCACGCCCTGG ACGCCGTGGTGGTGGCCTGCAGCACCGTGGCCATGCAGCAGAAGATCACCCGCT TCGTGCGCTA CAAGGAGATGAACGCCT TCGACGGTAAAACCATCGACAAGGAGACCGGCGAGGTGCTGCACCAG AAGACCCACT TCCCCCAGCCCTGGGAGT TCT TCGCCCAGGAGGTGATGATCCGCGTGT TCGGCA AGCCCGACGGCAAGCCCGAGT TCGAGGAGGCCGACACCCCCGAGAAGCTGCGCACCCTGCTGGC CGAGAAGCTGAGCAGCCGCCCTGAGGCCGTGCACGAGTACGTGACTCCTCTGT TCGTGAGCCGC GCCCCCAACCGCAAGATGAGCGGTCAGGGTCACATGGAGACCGTGAAGAGCGCCAAGCGCCTGG ACGAGGGCGTGAGCGTGCTGCGCGTGCCCCTGACCCAGCTGAAGCTGAAGGACCTGGAGAAGAT GGTGAACCGCGAGCGCGAGCCCAAGCTGTACGAGGCCCTGAAGGCCCGCCTGGAGGCCCACAAG GACGACCCCGCCAAGGCCT TCGCCGAGCCCT TCTACAAGTACGACAAGGCCGGCAACCGCACCC AGCAGGTGAAGGCCGTGCGCGTGGAGCAGGTGCAGAAGACCGGCGTGTGGGTGCGCAACCACAA CGGCATCGCCGACAACGCCACCATGGTGCGCGTGGACGTGT TCGAGAAGGGCGACAAGTACTAC CTGGTGCCCATCTACAGCTGGCAGGTGGCCAAGGGCATCCTGCCCGACCGCGCCGTGGTGCAGG GCAAGGACGAGGAGGACTGGCAGCTGATCGACGACAGCT TCAACT TCAAGT TCAGCCTGCACCC CAACGACCTGGTGGAGGTGATCACCAAGAAGGCCCGCATGTTCGGCTACTTCGCCAGCTGCCAC
CGCGGCACCGGCAACATCAACATCCGCATCCACGACCTGGACCACAAGATCGGCAAGAACGGCA
TCCTGGAGGGCATCGGCGTGAAGACCGCCCTGAGCTTCCAGAAGTACCAGATCGACGAGCTGGG
CAAGGAGATCCGCCCCTGCCGCCTGAAGAAGCGCCCTCCTGTGCGCTAA
(SEQ ID NO: 24)
Provided below is the corresponding amino acid sequence of a N. meningitidis Cas9 molecule.
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAI SRALEKEGLKDKKSPLNLSPELQDEIGT AFSLFKTDEDITGRLKDRIQPEILEALLKHI SFDKFVQI SLKALRRIVPLMEQGKRYDEACAEI YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR* (SEQ ID NO: 25)
Provided below is an amino acid sequence of a S. aureus Cas9 molecule.
MKRNYILGLDIGITSVGYGI IDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT GNELSTKEQI SRNSKALEEKYVAELQLERLKKDGEVRGS INRFKTSDYVKEAKQLLKVQKAYHQ LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY NALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK PEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP VVKRSFIQS IKVINAI IKKYGLPNDI I IELAREKNSKDAQKMINEMQKRNRQTNERIEEI IRTT GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVK QEENSKKGNRTPFQYLSSSDSKI SYETFKKHILNLAKGKGRI SKTKKEYLLEERDINRFSVQKD FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKS INGGFTSFLRRKWKFKKERNKGYKHHAED ALI IANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKI SNQA EFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRI IKTIASKT QS IKKYSTDILGNLYEVKSKKHPQI IKKG*
(SEQ ID NO: 26)
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. aureus Cas9.
ATGAAAAGGAACTACATTCTGGGGCTGGACATCGGGATTACAAGCGTGGGGTATGGGATTATTG ACTATGAAACAAGGGACGTGATCGACGCAGGCGTCAGACTGTTCAAGGAGGCCAACGTGGAAAA CAATGAGGGACGGAGAAGCAAGAGGGGAGCCAGGCGCCTGAAACGACGGAGAAGGCACAGAATC CAGAGGGTGAAGAAACTGCTGTTCGATTACAACCTGCTGACCGACCATTCTGAGCTGAGTGGAA TTAATCCTTATGAAGCCAGGGTGAAAGGCCTGAGTCAGAAGCTGTCAGAGGAAGAGTTTTCCGC AGCTCTGCTGCACCTGGCTAAGCGCCGAGGAGTGCATAACGTCAATGAGGTGGAAGAGGACACC GGCAACGAGCTGTCTACAAAGGAACAGATCTCACGCAATAGCAAAGCTCTGGAAGAGAAGTATG TCGCAGAGCTGCAGCTGGAACGGCTGAAGAAAGATGGCGAGGTGAGAGGGTCAATTAATAGGTT CAAGACAAGCGACTACGTCAAAGAAGCCAAGCAGCTGCTGAAAGTGCAGAAGGCTTACCACCAG CTGGATCAGAGCTTCATCGATACTTATATCGACCTGCTGGAGACTCGGAGAACCTACTATGAGG GACCAGGAGAAGGGAGCCCCTTCGGATGGAAAGACATCAAGGAATGGTACGAGATGCTGATGGG ACATTGCACCTATTTTCCAGAAGAGCTGAGAAGCGTCAAGTACGCTTATAACGCAGATCTGTAC AACGCCCTGAATGACCTGAACAACCTGGTCATCACCAGGGATGAAAACGAGAAACTGGAATACT ATGAGAAGTTCCAGATCATCGAAAACGTGTTTAAGCAGAAGAAAAAGCCTACACTGAAACAGAT TGCTAAGGAGATCCTGGTCAACGAAGAGGACATCAAGGGCTACCGGGTGACAAGCACTGGAAAA CCAGAGTTCACCAATCTGAAAGTGTATCACGATATTAAGGACATCACAGCACGGAAAGAAATCA TTGAGAACGCCGAACTGCTGGATCAGATTGCTAAGATCCTGACTATCTACCAGAGCTCCGAGGA CATCCAGGAAGAGCTGACTAACCTGAACAGCGAGCTGACCCAGGAAGAGATCGAACAGATTAGT AATCTGAAGGGGTACACCGGAACACACAACCTGTCCCTGAAAGCTATCAATCTGATTCTGGATG AGCTGTGGCATACAAACGACAATCAGATTGCAATCTTTAACCGGCTGAAGCTGGTCCCAAAAAA GGTGGACCTGAGTCAGCAGAAAGAGATCCCAACCACACTGGTGGACGATTTCATTCTGTCACCC GTGGTCAAGCGGAGCTTCATCCAGAGCATCAAAGTGATCAACGCCATCATCAAGAAGTACGGCC TGCCCAATGATATCATTATCGAGCTGGCTAGGGAGAAGAACAGCAAGGACGCACAGAAGATGAT CAATGAGATGCAGAAACGAAACCGGCAGACCAATGAACGCATTGAAGAGATTATCCGAACTACC GGGAAAGAGAACGCAAAGTACCTGATTGAAAAAATCAAGCTGCACGATATGCAGGAGGGAAAGT GTCTGTATTCTCTGGAGGCCATCCCCCTGGAGGACCTGCTGAACAATCCATTCAACTACGAGGT CGATCATATTATCCCCAGAAGCGTGTCCTTCGACAATTCCTTTAACAACAAGGTGCTGGTCAAG CAGGAAGAGAACTCTAAAAAGGGCAATAGGACTCCTTTCCAGTACCTGTCTAGTTCAGATTCCA AGATCTCTTACGAAACCTTTAAAAAGCACATTCTGAATCTGGCCAAAGGAAAGGGCCGCATCAG CAAGACCAAAAAGGAGTACCTGCTGGAAGAGCGGGACATCAACAGATTCTCCGTCCAGAAGGAT TTTATTAACCGGAATCTGGTGGACACAAGATACGCTACTCGCGGCCTGATGAATCTGCTGCGAT CCTATTTCCGGGTGAACAATCTGGATGTGAAAGTCAAGTCCATCAACGGCGGGTTCACATCTTT TCTGAGGCGCAAATGGAAGTTTAAAAAGGAGCGCAACAAAGGGTACAAGCACCATGCCGAAGAT GCTCTGATTATCGCAAATGCCGACTTCATCTTTAAGGAGTGGAAAAAGCTGGACAAAGCCAAGA AAGTGATGGAGAACCAGATGTTCGAAGAGAAGCAGGCCGAATCTATGCCCGAAATCGAGACAGA ACAGGAGTACAAGGAGATTTTCATCACTCCTCACCAGATCAAGCATATCAAGGATTTCAAGGAC TACAAGTACTCTCACCGGGTGGATAAAAAGCCCAACAGAGAGCTGATCAATGACACCCTGTATA GTACAAGAAAAGACGATAAGGGGAATACCCTGATTGTGAACAATCTGAACGGACTGTACGACAA AGATAATGACAAGCTGAAAAAGCTGATCAACAAAAGTCCCGAGAAGCTGCTGATGTACCACCAT GATCCTCAGACATATCAGAAACTGAAGCTGATTATGGAGCAGTACGGCGACGAGAAGAACCCAC TGTATAAGTACTATGAAGAGACTGGGAACTACCTGACCAAGTATAGCAAAAAGGATAATGGCCC CGTGATCAAGAAGATCAAGTACTATGGGAACAAGCTGAATGCCCATCTGGACATCACAGACGAT TACCCTAACAGTCGCAACAAGGTGGTCAAGCTGTCACTGAAGCCATACAGATTCGATGTCTATC TGGACAACGGCGTGTATAAATTTGTGACTGTCAAGAATCTGGATGTCATCAAAAAGGAGAACTA CTATGAAGTGAATAGCAAGTGCTACGAAGAGGCTAAAAAGCTGAAAAAGATTAGCAACCAGGCA GAGTTCATCGCCTCCTTTTACAACAACGACCTGATTAAGATCAATGGCGAACTGTATAGGGTCA TCGGGGTGAACAATGATCTGCTGAACCGCATTGAAGTGAATATGATTGACATCACTTACCGAGA GTATCTGGAAAACATGAATGATAAGCGCCCCCCTCGAATTATCAAAACAATTGCCTCTAAGACT CAGAGTATCAAAAAGTACTCAACCGACATTCTGGGAAACCTGTATGAGGTGAAGAGCAAAAAGC ACCCTCAGATTATCAAAAAGGGC
(SEQ ID NO: 39)
If any of the above Cas9 sequences are fused with a peptide or polypeptide at the C- terminus, it is understood that the stop codon will be removed.
Other Cas Molecules and Cas Polypeptides
Various types of Cas molecules or Cas polypeptides can be used to practice the inventions disclosed herein. In some embodiments, Cas molecules of Type II Cas systems are used. In other embodiments, Cas molecules of other Cas systems are used. For example, Type I or Type III Cas molecules may be used. Exemplary Cas molecules (and Cas systems) are described, e.g., in Haft et al, PLoS COMPUTATIONAL BIOLOGY 2005, 1(6): e60 and Makarova et al, NATURE REVIEW MICROBIOLOGY 2011, 9:467-477, the contents of both references are incorporated herein by reference in their entirety. Exemplary Cas molecules (and Cas systems) are also shown in Table 33.
Figure imgf000616_0001
Table 33: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft ei a/.§ encoded protein superfamily) of
(PDB encoded
accessions)1 protein
cas4 • Subtype I-A cas4 and csal NA COG1468 APE1239 and BH0340
• Subtype I-B
• Subtype I-C
• Subtype I-D
• Subtype II- B
cas5 • Subtype I-A cas5a, cas5d, 3KG4 COG1688 APE1234, BH0337,
• Subtype I-B cas5e, cas5h, (RAMP) devS and ygcl
• Subtype I-C cas5p, cas5t
• Subtype I-E and cmx5
cas6 • Subtype I-A cas6 and cmx6 3I4H COG1583 and PF1131 and slr7014
• Subtype I-B COG5551
• Subtype I-D (RAMP)
• Subtype III- Α· Subtype
III-B
cas6e • Subtype I-E cse3 1WJ9 (RAMP) ygcH
cas6f • Subtype I-F csy4 2XLJ (RAMP) yl727
cas7 • Subtype I-A csal, csd2, NA COG 1857 and devR and ygcJ
• Subtype I-B cse4, csh2, COG3649
• Subtype I-C cspl and cst2 (RAMP)
• Subtype I-E
cas8al • Subtype I- cmxl, cstl, NA BH0338-like LA3191 and
A** csx8, csx 13 PG2018
and CXXC- CXXC
cas8a2 • Subtype I- csa4 and csx9 NA PH0918 AF0070, AF1873,
A** MJ0385, PF0637,
PH0918 and SSO1401 cas8b • Subtype I- cshl and NA BH0338-like MTH1090 and
B« TM1802 TM1802 cas8c • Subtype I- csdl and cspl NA BH0338-like BH0338
C**
cas9 • Type II** csnl and csxl2 NA COG3513 FTN_0757 and
SPyl046 cas 10 • Type III** cmr2, csml NA COG1353 MTH326, Rv2823c and csxll and TM1794 caslOd • Subtype I- csc3 NA COG1353 slr7011
D**
csyl • Subtype I- csyl NA yl724-like yl724
F**
csy2 • Subtype I-F csy2 NA (RAMP) y!725 Table 33: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Hatt et al encoded protein superfamily) of
(PDB encoded
accessions)1 protein
csy3 • Subtype I-F csy3 NA (RAMP) yl726
csel • Subtype I- csel NA YgcL-like ygcL
cse2 • Subtype I-E cse2 2ZCA YgcK-like ygcK
cscl • Subtype I-D cscl NA alrl563-like alrl563
(RAMP)
csc2 • Subtype I-D cscl and csc2 NA COG1337 slr7012
(RAMP)
csa5 • Subtype I-A csa5 NA AF1870 AF1870, MJ0380,
PF0643 and SS01398 csn2 • Subtype II- csn2 NA SPyl049-like SPyl049
A
csm.2 • Subtype III- csm.2 NA COG1421 MTH1081 and
A« SERP2460 csm.3 • Subtype III- csc2 and csm.3 NA COG1337 MTH1080 and
A (RAMP) SERP2459 csm.4 • Subtype III- csm4 NA COG 1567 MTH1079 and
A (RAMP) SERP2458 csm5 • Subtype III- csm5 NA COG1332 MTH1078 and
A (RAMP) SERP2457 csm.6 • Subtype III- APE2256 and 2WTE COG1517 APE2256 and
A csm6 SS01445 cmrl • Subtype Hi- cmrl NA COG 1367 PF1130
fi (RAMP)
cmr3 • Subtype Hi- cmr3 NA COG 1769 PF1128
fi (RAMP)
cmr4 • Subtype Hi- cmr4 NA COG1336 PF1126
fi (RAMP)
cmr5 • Subtype III- cmr5 2ZOP and 20EB COG3337 MTH324 and PF1125
cmr6 • Subtype Hi- cmr6 NA COG 1604 PF1124
fi (RAMP)
csbl • Subtype I-U GSU0053 NA (RAMP) Balac_1306 and
GSU0053 csb2 • Subtype I- NA NA (RAMP) Balac_1305 and
U GSU0054 csb3 • Subtype I-U NA NA (RAMP) Balac_1303 csx 17 • Subtype I-U NA NA NA Btus_2683 csx 14 • Subtype I-U NA NA NA GSU0052 Table 33: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Hatt et al encoded protein superfamily) of
(PDB encoded
accessions)1 protein
csx 10 • Subtype I-U csx 10 NA (RAMP) Caur_2274 csx 16 • Subtype III- VVA1548 NA NA VVA1548
U
csaX • Subtype III- csaX NA NA SS01438
U
csx3 • Subtype III- csx3 NA NA AF1864
U
csxl • Subtype III- csa3, csxl, lXMX and 2171 COG1517 and MJ1666, NE0113,
U csx2, DXTHG, COG4006 PF1127 and TM1812
NE0113 and
TIGR02710
csx 15 • Unknown NA NA TTE2665 TTE2665 csfl • Type U csfl NA NA AFE_1038 csfl • Type U csfl NA (RAMP) AFE_1039 csf3 • Type U csf3 NA (RAMP) AFE_1040 csf4 • Type U csf4 NA NA AFE_1037
IV. Functional Analysis of Candidate Molecules
Candidate Cas9 molecules, candidate gRNA molecules, candidate Cas9 molecule/gRNA molecule complexes, can be evaluated by art-known methods or as described herein. For example, exemplary methods for evaluating the endonuclease activity of Cas9 molecule are described, e.g., in Jinek et al, SCIENCE 2012, 337(6096):816-821.
Binding and Cleavage Assay: Testing the endonuclease activity of Cas9 molecule
The ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in a plasmid cleavage assay. In this assay, synthetic or in vitro- transcribed gRNA molecule is pre-annealed prior to the reaction by heating to 95 °C and slowly cooling down to room temperature. Native or restriction digest-linearized plasmid DNA (300 ng (~8 nM)) is incubated for 60 min at 37°C with purified Cas9 protein molecule (50-500 nM) and gRNA (50-500 nM, 1: 1) in a Cas9 plasmid cleavage buffer (20 mM HEPES pH 7.5, 150 mM KC1, 0.5 mM DTT, 0.1 mM EDTA) with or without 10 mM MgCl2. The reactions are stopped with 5X DNA loading buffer (30% glycerol, 1.2% SDS, 250 mM EDTA), resolved by a 0.8 or 1% agarose gel electrophoresis and visualized by ethidium bromide staining. The resulting cleavage products indicate whether the Cas9 molecule cleaves both DNA strands, or only one of the two strands. For example, linear DNA products indicate the cleavage of both DNA strands. Nicked open circular products indicate that only one of the two strands is cleaved.
Alternatively, the ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in an oligonucleotide DNA cleavage assay. In this assay, DNA oligonucleotides (10 pmol) are radiolabeled by incubating with 5 units T4 polynucleotide kinase and -3-6 pmol (-20-40 mCi) [γ-32Ρ]-ΑΤΡ in IX T4 polynucleotide kinase reaction buffer at 37°C for 30 min, in a 50 μΐ^ reaction. After heat inactivation (65°C for 20 min), reactions are purified through a column to remove unincorporated label. Duplex substrates (100 nM) are generated by annealing labeled oligonucleotides with equimolar amounts of unlabeled complementary oligonucleotide at 95 °C for 3 min, followed by slow cooling to room temperature. For cleavage assays, gRNA molecules are annealed by heating to 95°C for 30 s, followed by slow cooling to room temperature. Cas9 (500 nM final concentration) is pre- incubated with the annealed gRNA molecules (500 nM) in cleavage assay buffer (20 mM
HEPES pH 7.5, 100 mM KC1, 5 mM MgC12, 1 mM DTT, 5% glycerol) in a total volume of 9 μΐ. Reactions are initiated by the addition of 1 μΐ target DNA (10 nM) and incubated for 1 h at 37°C. Reactions are quenched by the addition of 20 μΐ of loading dye (5 mM EDTA, 0.025% SDS, 5% glycerol in formamide) and heated to 95°C for 5 min. Cleavage products are resolved on 12% denaturing polyacrylamide gels containing 7 M urea and visualized by phosphorimaging. The resulting cleavage products indicate that whether the complementary strand, the non- complementary strand, or both, are cleaved.
One or both of these assays can be used to evaluate the suitability of a candidate gRNA molecule or candidate Cas9 molecule.
Binding Assay: Testing the binding of Cas9 molecule to target DNA
Exemplary methods for evaluating the binding of Cas9 molecule to target DNA are described, e.g., in Jinek et al, SCIENCE 2012; 337(6096):816-821.
For example, in an electrophoretic mobility shift assay, target DNA duplexes are formed by mixing of each strand (10 nmol) in deionized water, heating to 95 °C for 3 min and slow cooling to room temperature. All DNAs are purified on 8% native gels containing IX TBE.
DNA bands are visualized by UV shadowing, excised, and eluted by soaking gel pieces in DEPC-treated H20. Eluted DNA is ethanol precipitated and dissolved in DEPC-treated H20. DNA samples are 5' end labeled with [γ-32Ρ]-ΑΤΡ using T4 polynucleotide kinase for 30 min at 37°C. Polynucleotide kinase is heat denatured at 65°C for 20 min, and unincorporated radiolabel is removed using a column. Binding assays are performed in buffer containing 20 mM HEPES pH 7.5, 100 mM KC1, 5 mM MgCl2, 1 mM DTT and 10% glycerol in a total volume of 10 μΐ. Cas9 protein molecule is programmed with equimolar amounts of pre-annealed gRNA molecule and titrated from 100 pM to 1 μΜ. Radiolabeled DNA is added to a final concentration of 20 pM. Samples are incubated for 1 h at 37°C and resolved at 4°C on an 8% native polyacrylamide gel containing IX TBE and 5 mM MgCl2. Gels are dried and DNA visualized by
pho sphorimaging .
Differential Scanning Flourimetry (DSF)
The thermostability of Cas9-gRNA ribonucleoprotein (RNP) complexes can be measured via DSF. This technique measures the thermostability of a protein, which can increase under favorable conditions such as the addition of a binding RNA molecule, e.g., a gRNA.
The assay is performed using two different protocols, one to test the best stoichiometric ratio of gRNA:Cas9 protein and another to determine the best solution conditions for RNP formation.
To determine the best solution to form RNP complexes, a 2uM solution of Cas9 in water+10x SYPRO Orange® (Life Techonologies cat#S-6650) and dispensed into a 384 well plate. An equimolar amount of gRNA diluted in solutions with varied pH and salt is then added. After incubating at room temperature for lO'and brief centrifugation to remove any bubbles,a Bio-Rad CFX384™ Real-Time System CI 000 Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every 10 seconds.
The second assay consists of mixing various concentrations of gRNA with 2uM Cas9 in optimal buffer from assay 1 above and incubating at RT for 10' in a 384 well plate. An equal volume of optimal buffer + lOx SYPRO Orange® (Life Techonologies cat#S-6650) is added and the plate sealed with Microseal® B adhesive (MSB-1001). Following brief centrifugation to remove any bubbles, a Bio-Rad CFX384™ Real-Time System CIOOO Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every 10 seconds.
V. Genome Editing Approaches
Mutations in the HBB gene may be corrected using one of the approaches discussed herein. In an embodiment, a mutation in the HBB gene is corrected by homology directed repair (HDR) using an exogenously provided template nucleic acid (see Section V. l). In another embodiment, a mutation in the HBB gene is corrected by homology directed repair without using an exogenously provided template nucleic acid (see Section V. l).
Also described herein are methods for targeted knockout of one or both alleles of the BCL11A gene using NHEJ (see Section V.2). In another embodiment, methods are provided for targeted knockdown of the BCL11A gene (see Section V.3).
V.l HDR Repair and Template Nucleic Acids
As described herein, nuclease-induced homology directed repair (HDR) can be used to alter a target sequence and correct (e.g., repair or edit) a mutation in the genome. While not wishing to be bound by theory, it is believed that alteration of the target sequence occurs by homology-directed repair (HDR) with an exogenously provided donor template or template nucleic acid. For example, the donor template or the template nucleic acid provides for alteration of the target sequence. It is contemplated that a plasmid donor can be used as a template for homologous recombination. It is further contemplated that a single stranded donor template can be used as a template for alteration of the target sequence by alternate methods of homology directed repair (e.g., single strand annealing) between the target sequence and the donor template. Donor template-effected alteration of a target sequence depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a double strand break or two single strand breaks.As described herein, nuclease-induced homology directed repair (HDR) can be used to alter a target sequence and correct (e.g., repair or edit) a mutation in the genome without the use of an exogenously provided donor template or template nucleic acid. While not wishing to be bound by theory, it is believed that alteration of the target sequence occurs by homology-directed repair (HDR) with endogenous genomic donor sequence. For example, the endogenous genomic donor sequence provides for alteration of the target sequence. It is contemplated that in an embodiment the endogenous genomic donor sequence is located on the same chromosome as the target sequence. It is further contemplated that in another embodiment the endogenous genomic donor sequence is located on a different chromosome from the target sequence. In an
embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Alteration of a target sequence by endogenous genomic donor sequence depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a double strand break or two single strand breaks.
Mutations that can be corrected by HDR using a template nucleic acid, or using endogenous genomic donor sequence, include point mutations. In an embodiment, a point mutation can be corrected by either a single double-strand break or two single strand breaks. In an embodiment, a point mutation can be corrected by (1) a single double- strand break, (2) two single strand breaks, (3) two double stranded breaks with a break occurring on each side of the target position, (4) one double stranded break and two single strand breaks with the double strand break and two single strand breaks occurring on each side of the target position (5) four single stranded breaks with a pair of single stranded breaks occurring on each side of the target position, or (6) one single stranded break.
In an embodiment where a single-stranded template nucleic acid is used, the target position can be altered by alternative HDR.
Donor template-effected alteration of a target position depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a nick, a double strand break, or two single strand breaks, e.g., one on each strand of the target nucleic acid. After introduction of the breaks on the target nucleic acid, resection occurs at the break ends resulting in single stranded overhanging DNA regions.
In canonical HDR, a double- stranded donor template is introduced, comprising homologous sequence to the target nucleic acid that will either be directly incorporated into the target nucleic acid or used as a template to correct the sequence of the target nucleic acid. After resection at the break, repair can progress by different pathways, e.g., by the double Holliday junction model (or double strand break repair, DSBR, pathway) or the synthesis-dependent strand annealing (SDSA) pathway. In the double Holliday junction model, strand invasion by the two single stranded overhangs of the target nucleic acid to the homologous sequences in the donor template occurs, resulting in the formation of an intermediate with two Holliday junctions. The junctions migrate as new DNA is synthesized from the ends of the invading strand to fill the gap resulting from the resection. The end of the newly synthesized DNA is ligated to the resected end, and the junctions are resolved, resulting in the correction of the target nucleic acid, e.g., incorporation of the correct sequence of the donor template at the corresponding target position. Crossover with the donor template may occur upon resolution of the junctions. In the SDSA pathway, only one single stranded overhang invades the donor template and new DNA is synthesized from the end of the invading strand to fill the gap resulting from resection. The newly synthesized DNA then anneals to the remaining single stranded overhang, new DNA is synthesized to fill in the gap, and the strands are ligated to produce the corrected DNA duplex.
In alternative HDR, a single strand donor template, e.g., template nucleic acid, is introduced. A nick, single strand break, or double strand break at the target nucleic acid, for altering a desired target position, is mediated by a Cas9 molecule, e.g., described herein, and resection at the break occurs to reveal single stranded overhangs. Incorporation of the sequence of the template nucleic acid to correct or alter the target position of the target nucleic acid typically occurs by the SDSA pathway, as described above.
Methods of promoting HDR pathways, e.g., canonical HDR or alt- HDR, are described herein in Section VI.
Additional details on template nucleic acids are provided in Section IV entitled
"Template nucleic acids" in International Application PCT/US2014/057905.
Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with a template nucleic acid or with endogenous genomic donor sequence include, e.g., point mutation at E6, e.g., E6V.
Double strand break mediated correction
In an embodiment, double strand cleavage is effected by a Cas9 molecule having cleavage activity associated with an HNH-like domain and cleavage activity associated with a RuvC-like domain, e.g., an N-terminal RuvC-like domain, e.g., a wild type Cas9. Such embodiments require only a single gRNA.
Single strand break mediated correction
In some embodiments, one single strand break, or nick, is effected by a Cas9 molecule having nickase activity, e.g., a Cas9 nickase as described herein. A nicked target nucleic acid can be a substrate for alt-HDR. In other embodiments, two single strand breaks, or nicks, are effected by a Cas9 molecule having nickase activity, e.g., cleavage activity associated with an HNH-like domain or cleavage activity associated with an N-terminal RuvC-like domain. Such embodiments usually require two gRNAs, one for placement of each single strand break. In an embodiment, the Cas9 molecule having nickase activity cleaves the strand to which the gRNA hybridizes, but not the strand that is complementary to the strand to which the gRNA hybridizes. In an embodiment, the Cas9 molecule having nickase activity does not cleave the strand to which the gRNA hybridizes, but rather cleaves the strand that is complementary to the strand to which the gRNA hybridizes.
In an embodiment, the nickase has HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation. D10A inactivates RuvC; therefore, the Cas9 nickase has (only) HNH activity and will cut on the strand to which the gRNA hybridizes (e.g., the complementary strand, which does not have the NGG PAM on it). In other embodiments, a Cas9 molecule having an H840, e.g., an H840A, mutation can be used as a nickase. H840A inactivates HNH; therefore, the Cas9 nickase has (only) RuvC activity and cuts on the non-complementary strand (e.g., the strand that has the NGG PAM and whose sequence is identical to the gRNA). In other embodiments, a Cas9 molecule having an N863 mutation, e.g., the N863A mutation, mutation can be used as a nickase. N863A inactivates HNH therefore the Cas9 nickase has (only) RuvC activity and cuts on the non-complementary strand (the strand that has the NGG PAM and whose sequence is identical to the gRNA).
In an embodiment, in which a nickase and two gRNAs are used to position two single strand nicks, one nick is on the + strand and one nick is on the - strand of the target nucleic acid. The PAMs can be outwardly facing. The gRNAs can be selected such that the gRNAs are separated by, from about 0-50, 0-100, or 0-200 nucleotides. In an embodiment, there is no overlap between the target sequences that are complementary to the targeting domains of the two gRNAs. In an embodiment, the gRNAs do not overlap and are separated by as much as 50, 100, or 200 nucleotides. In an embodiment, the use of two gRNAs can increase specificity, e.g., by decreasing off-target binding (Ran et al., Cell 2013; 154(6): 1380-1389).
In an embodiment, a single nick can be used to induce HDR, e.g., alt-HDR. It is contemplated herein that a single nick can be used to increase the ratio of HR to NHEJ at a given cleavage site. In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
Placement of double strand or single strand breaks relative to the target position
The double strand break or single strand break in one of the strands should be sufficiently close to target position such that an alteration is produced in the desired region, e.g., correction of a mutation occurs. In an embodiment, the distance is not more than 50, 100, 200, 300, 350 or 400 nucleotides. While not wishing to be bound by theory, in some embodiments, it is believed that the break should be sufficiently close to target position such that the target position is within the region that is subject to exonuclease-mediated removal during end resection. If the distance between the target position and a break is too great, the mutation or other sequence desired to be altered may not be included in the end resection and, therefore, may not be corrected, as donor sequence, either exogenously provided donor sequence or endogenous genomic donor sequence, in some embodiments is only used to correct sequence within the end resection region.
In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150 or 200 nucleotides of the region desired to be altered, e.g., a mutation. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the region desired to be altered, e.g., a mutation. In some embodiments, a break is positioned within the region desired to be altered, e.g., within a region defined by at least two mutant nucleotides. In some embodiments, a break is positioned immediately adjacent to the region desired to be altered, e.g., immediately upstream or downstream of a mutation.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150 or 200 nucleotides of a target position. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the desired region. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, in which a gRNA (unimolecular (or chimeric) or modular gRNA) and Cas9 nuclease induce a double strand break for the purpose of inducing HDR-mediated correction, the cleavage site is between 0-200 bp (e.g., 0-175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position. In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
In embodiments, one can promote HDR by using nickases to generate a break with overhangs. While not wishing to be bound by theory, the single stranded nature of the overhangs can enhance the cell's likelihood of repairing the break by HDR as opposed to, e.g., NHEJ. Specifically, in some embodiments, HDR is promoted by selecting a first gRNA that targets a first nickase to a first target sequence, and a second gRNA that targets a second nickase to a second target sequence which is on the opposite DNA strand from the first target sequence and offset from the first nick.
In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
Placement of a first break and a second break relative to each other
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
When two or more gRNAs are used to position two or more cleavage events, e.g., double strand or single strand breaks, in a target nucleic acid, it is contemplated that the two or more cleavage events may be made by the same or different Cas9 proteins. For example, when two gRNAs are used to position two double stranded breaks, a single Cas9 nuclease may be used to create both double stranded breaks. When two or more gRNAs are used to position two or more single stranded breaks (nicks), a single Cas9 nickase may be used to create the two or more nicks. When two or more gRNAs are used to position at least one double stranded break and at least one single stranded break, two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double stranded versus a single stranded break at the desired position in the target nucleic acid.
In some embodiments, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecules are complementary to opposite strands of the target nucleic acid molecule. In some embodiments, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
In certain embodiments, two gRNA are selected to direct Cas9-mediated cleavage at two positions that are a preselected distance from each other. In embodiments, the two points of cleavage are on opposite strands of the target nucleic acid. In some embodiments, the two cleavage points form a blunt ended break, and in other embodiments, they are offset so that the DNA ends comprise one or two overhangs (e.g., one or more 5' overhangs and/or one or more 3' overhangs). In some embodiments, each cleavage event is a nick. In embodiments, the nicks are close enough together that they form a break that is recognized by the double stranded break machinery (as opposed to being recognized by, e.g., the SSBr machinery). In embodiments, the nicks are far enough apart that they create an overhang that is a substrate for HDR, i.e., the placement of the breaks mimics a DNA substrate that has experienced some resection. For instance, in some embodiments the nicks are spaced to create an overhang that is a substrate for processive resection. In some embodiments, the two breaks are spaced within 25-65 nucleotides of each other. The two breaks may be, e.g., about 25, 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. The two breaks may be, e.g., at least about 25, 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. The two breaks may be, e.g., at most about 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. In embodiments, the two breaks are about 25-30, 30-35, 35-40, 40-45, 45-50, 50-55, 55-60, or 60-65 nucleotides of each other.
In some embodiments, the break that mimics a resected break comprises a 3' overhang (e.g., generated by a DSB and a nick, where the nick leaves a 3' overhang), a 5' overhang (e.g., generated by a DSB and a nick, where the nick leaves a 5' overhang), a 3' and a 5' overhang (e.g., generated by three cuts), two 3' overhangs (e.g., generated by two nicks that are offset from each other), or two 5' overhangs (e.g., generated by two nicks that are offset from each other).
In an embodiment, in which two gRNAs (independently, unimolecular (or chimeric) or modular gRNA) complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing HDR-mediated correction, the closer nick is between 0-200 bp (e.g., 0-175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position and the two nicks will ideally be within 25-65 bp of each other (e.g., 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 30 to 55, 30 to 50, 30 to 45, 30 to 40, 30 to 35, 35 to 55, 35 to 50, 35 to 45, 35 to 40, 40 to 55, 40 to 50, 40 to 45 bp, 45 to 50 bp, 50 to 55 bp, 55 to 60 bp, 60 to 65 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20, 10 or 5 bp away from each other). In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
In one embodiment, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single stranded breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single stranded breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are, in embodiments, within 25-65 bp of each other (e.g., between 25 to 55, 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, 40 to 45 bp, 45 to 50 bp, 50 to 55 bp, 55 to 60 bp, or 60 to 65 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp).
When two gRNAs are used to target Cas9 molecules to breaks, different combinations of Cas9 molecules are envisioned. In some embodiments, a first gRNA is used to target a first Cas9 molecule to a first target position, and a second gRNA is used to target a second Cas9 molecule to a second target position. In some embodiments, the first Cas9 molecule creates a nick on the first strand of the target nucleic acid, and the second Cas9 molecule creates a nick on the opposite strand, resulting in a double stranded break (e.g., a blunt ended cut or a cut with overhangs).
Different combinations of nickases can be chosen to target one single stranded break to one strand and a second single stranded break to the opposite strand. When choosing a combination, one can take into account that there are nickases having one active RuvC-like domain, and nickases having one active HNH domain. In an embodiment, a RuvC-like domain cleaves the non-complementary strand of the target nucleic acid molecule. In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. Generally, if both Cas9 molecules have the same active domain (e.g., both have an active RuvC domain or both have an active HNH domain), one will choose two gRNAs that bind to opposite strands of the target. In more detail, in some embodiments, a first gRNA is complementary with a first strand of the target nucleic acid and binds a nickase having an active RuvC-like domain and causes that nickase to cleave the strand that is non-complementary to that first gRNA, i.e., a second strand of the target nucleic acid; and a second gRNA is complementary with a second strand of the target nucleic acid and binds a nickase having an active RuvC-like domain and causes that nickase to cleave the strand that is non-complementary to that second gRNA, i.e., the first strand of the target nucleic acid. Conversely, in some embodiments, a first gRNA is complementary with a first strand of the target nucleic acid and binds a nickase having an active HNH domain and causes that nickase to cleave the strand that is complementary to that first gRNA, i.e., a first strand of the target nucleic acid; and a second gRNA is complementary with a second strand of the target nucleic acid and binds a nickase having an active HNH domain and causes that nickase to cleave the strand that is complementary to that second gRNA, i.e., the second strand of the target nucleic acid. In another arrangement, if one Cas9 molecule has an active RuvC-like domain and the other Cas9 molecule has an active HNH domain, the gRNAs for both Cas9 molecules can be
complementary to the same strand of the target nucleic acid, so that the Cas9 molecule with the active RuvC-like domain will cleave the non-complementary strand and the Cas9 molecule with the HNH domain will cleave the complementary strand, resulting in a double stranded break.
Length of the homology arms of the donor template
The homology arm should extend at least as far as the region in which end resection may occur, e.g., in order to allow the resected single stranded overhang to find a complementary region within the donor template. The overall length could be limited by parameters such as plasmid size or viral packaging limits. In an embodiment, a homology arm does not extend into repeated elements, e.g., Alu repeats or LINE repeats.
Exemplary homology arm lengths include at least 50, 100, 250, 500, 750, 1000, 2000, 3000, 4000, or 5000 nucleotides. In some embodiments, the homology arm length is 50-100, 100-250, 250-500, 500-750, 750-1000, 1000-2000, 2000-3000, 3000-4000, or 4000-5000 nucleotides.
Target position, as used herein, refers to a site on a target nucleic acid (e.g., the chromosome) that is modified by a Cas9 molecule-dependent process. For example, the target position can be a modified Cas9 molecule cleavage of the target nucleic acid and template nucleic acid directed modification, e.g., correction, of the target position. In an embodiment, a target position can be a site between two nucleotides, e.g., adjacent nucleotides, on the target nucleic acid into which one or more nucleotides is added. The target position may comprise one or more nucleotides that are altered, e.g., corrected, by a template nucleic acid. In an
embodiment, the target position is within a target sequence (e.g., the sequence to which the gRNA binds). In an embodiment, a target position is upstream or downstream of a target sequence (e.g., the sequence to which the gRNA binds).
A template nucleic acid, as that term is used herein, refers to a nucleic acid sequence which can be used in conjunction with a Cas9 molecule and a gRNA molecule to alter the structure of a target position. In an embodiment, the target nucleic acid is modified to have the some or all of the sequence of the template nucleic acid, typically at or near cleavage site(s). In an embodiment, the template nucleic acid is single stranded. In an alternate embodiment, the template nucleic acid is double stranded. In an embodiment, the template nucleic acid is DNA, e.g., double stranded DNA. In an alternate embodiment, the template nucleic acid is single stranded DNA. In an embodiment, the template nucleic acid is encoded on the same vector backbone, e.g. AAV genome, plasmid DNA, as the Cas9 and gRNA. In an embodiment, the template nucleic acid is excised from a vector backbone in vivo, e.g., it is flanked by gRNA recognition sequences. In an embodiment, the template nucleic acid comprises endogenous genomic sequence
In an embodiment, the template nucleic acid alters the structure of the target position by participating in a homology directed repair event. In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.
Typically, the template sequence undergoes a breakage mediated or catalyzed recombination with the target sequence. In an embodiment, the template nucleic acid includes sequence that corresponds to a site on the target sequence that is cleaved by an eaCas9 mediated cleavage event. In an embodiment, the template nucleic acid includes sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas9 mediated event, and a second site on the target sequence that is cleaved in a second Cas9 mediated event.
In an embodiment, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation. In other embodiments, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5' or 3' non-translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element.
A template nucleic acid having homology with a target position in the HBB gene can be used to alter the structure of a target sequence. The template sequence can be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide.
A template nucleic acid typically comprises the following components:
[5' homology arm] -[replacement sequence] -[3' homology arm].
The homology arms provide for recombination into the chromosome, thus replacing the undesired element, e.g., a mutation or signature, with the replacement sequence. In an embodiment, the homology arms flank the most distal cleavage sites.
In an embodiment, the 3' end of the 5' homology arm is the position next to the 5' end of the replacement sequence. In an embodiment, the 5' homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides 5' from the 5' end of the replacement sequence.
In an embodiment, the 5' end of the 3' homology arm is the position next to the 3' end of the replacement sequence. In an embodiment, the 3' homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides 3' from the 3' end of the replacement sequence.
In an embodiment, to correct a mutation, the homology arms, e.g., the 5' and 3' homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., lOOObp of sequence on either side of the mutation).
It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats or LINE elements. For example, a 5' homology arm may be shortened to avoid a sequence repeat element. In other embodiments, a 3' homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5' and the 3' homology arms may be shortened to avoid including certain sequence repeat elements. It is contemplated herein that template nucleic acids for correcting a mutation may be designed for use as a single- stranded oligonucleotide, e.g., a single- stranded
oligodeoxynucleotide (ssODN). When using a ssODN, 5' and 3' homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made. In some embodiments, a longer homology arm is made by a method other than chemical synthesis, e.g., by denaturing a long double stranded nucleic acid and purifying one of the strands, e.g., by affinity for a strand- specific sequence anchored to a solid substrate.
While not wishing to be bound by theory, in some embodiments alt-HDR proceeds more efficiently when the template nucleic acid has extended homology 5' to the nick (i.e., in the 5' direction of the nicked strand). Accordingly, in some embodiments, the template nucleic acid has a longer homology arm and a shorter homology arm, wherein the longer homology arm can anneal 5' of the nick. In some embodiments, the arm that can anneal 5' to the nick is at least 25, 50, 75, 100, 125, 150, 175, or 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides from the nick or the 5' or 3' end of the replacement sequence. In some embodiemtns, the arm that can anneal 5' to the nick is at least 10%, 20%, 30%, 40%, or 50% longer than the arm that can anneal 3' to the nick. In some embodiments, the arm that can anneal 5' to the nick is at least 2x, 3x, 4x, or 5x longer than the arm that can anneal 3' to the nick. Depending on whether a ssDNA template can anneal to the intact strand or the nicked strand, the homology arm that anneals 5' to the nick may be at the 5' end of the ssDNA template or the 3' end of the ssDNA template, respectively.
Similarly, in some embodiments, the template nucleic acid has a 5' homology arm, a replacement sequence, and a 3' homology arm, such that the template nucleic acid has extended homology to the 5' of the nick. For example, the 5' homology arm and 3' homology arm may be substantially the same length, but the replacement sequence may extend farther 5' of the nick than 3' of the nick. In some embodiments, the replacement sequence extends at least 10%, 20%, 30%, 40%, 50%, 2x, 3x, 4x, or 5x further to the 5' end of the nick than the 3' end of the nick. While not wishing to be bound by theory, in some embodiments alt-HDR proceeds more efficiently when the template nucleic acid is centered on the nick. Accordingly, in some embodiments, the template nucleic acid has two homology arms that are essentially the same size. For instance, the first homology arm of a template nucleic acid may have a length that is within 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1% of the second homology arm of the template nucleic acid.
Similarly, in some embodiments, the template nucleic acid has a 5' homology arm, a replacement sequence, and a 3' homology arm, such that the template nucleic acid extends substantially the same distance on either side of the nick. For example, the homology arms may have different lengths, but the replacement sequence may be selected to compensate for this. For example, the replacement sequence may extend further 5' from the nick than it does 3' of the nick, but the homology arm 5' of the nick is shorter than the homology arm 3' of the nick, to compensate. The converse is also possible, e.g., that the replacement sequence may extend further 3' from the nick than it does 5' of the nick, but the homology arm 3' of the nick is shorter than the homology arm 5' of the nick, to compensate.
Exemplary arrangements of linear nucleic acid template systems
In an embodiment, the nucleic acid template system is double stranded. In an
embodiment, the nucleic acid template system is single stranded. In an embodiment, the nucleic acid template system comprises a single stranded portion and a double stranded portion. In an embodiment, the template nucleic acid comprises about 50 to 100, e.g., 55 to 95, 60 to 90, 65 to 85, or 70 to 80, base pairs, homology on either side of the nick and/or replacement sequence. In an embodiment, the template nucleic acid comprises about 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, or 100 base pairs homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequences.
In an embodiment, the template nucleic acid comprises about 150 to 200, e.g., 155 to 195, 160 to 190, 165 to 185, or 170 to 180, base pairs homology 3' of the nick and/or
replacement sequence. In an embodiment, the template nucleic acid comprises about 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, or 200 base pairs homology 3' of the nick or replacement sequence. In an embodiment, the template nucleic acid comprises less than about 100, 90, 80, 70, 60, 50, 40, 30, 20, 15, or 10 base pairs homology 5' of the nick or replacement sequence.
In an embodiment, the template nucleic acid comprises about 150 to 200, e.g., 155 to 195, 160 to 190, 165 to 185, or 170 to 180, base pairs homology 5' of the nick and/or
replacement sequence. In an embodiment, the template nucleic acid comprises about 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, or 200 base pairs homology 5' of the nick or replacement sequence. In an embodiment, the template nucleic acid comprises less than about 100, 90, 80, 70, 60, 50, 40, 30, 20, 15, or 10 base pairs homology 3' of the nick or replacement sequence.
Exemplary Template Nucleic Acids
In an embodiment, the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In some embodiments, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In other embodiments, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In other embodiments, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
The template nucleic acid may comprise a replacement sequence. In some embodiments, the template nucleic acid comprises a 5' homology arm. In other embodiments, the template nucleic acid comprises a 3' homology arm.
In embodiments, the template nucleic acid is linear double stranded DNA. The length may be, e.g., about 150-200 base pairs, e.g., about 150, 160, 170, 180, 190, or 200 base pairs. The length may be, e.g., at least 150, 160, 170, 180, 190, or 200 base pairs. In some
embodiments, the length is no greater than 150, 160, 170, 180, 190, or 200 base pairs. In some embodiments, a double stranded template nucleic acid has a length of about 160 base pairs, e.g., about 155-165, 150-170, 140-180, 130-190, 120-200, 110-210, 100-220, 90-230, or 80-240 base pairs.
The template nucleic acid can be linear single stranded DNA. In embodiments, the template nucleic acid is (i) linear single stranded DNA that can anneal to the nicked strand of the target nucleic acid, (ii) linear single stranded DNA that can anneal to the intact strand of the target nucleic acid, (iii) linear single stranded DNA that can anneal to the transcribed strand of the target nucleic acid, (iv) linear single stranded DNA that can anneal to the non-transcribed strand of the target nucleic acid, or more than one of the preceding. The length may be, e.g., about 150-200 nucleotides, e.g., about 150, 160, 170, 180, 190, or 200 nucleotides. The length may be, e.g., at least 150, 160, 170, 180, 190, or 200 nucleotides. In some embodiments, the length is no greater than 150, 160, 170, 180, 190, or 200 nucleotides. In some embodiments, a single stranded template nucleic acid has a length of about 160 nucleotides, e.g., about 155-165, 150-170, 140-180, 130-190, 120-200, 110-210, 100-220, 90-230, or 80-240 nucleotides.
In some embodiments, the template nucleic acid is circular double stranded DNA, e.g., a plasmid. In some embodiments, the template nucleic acid comprises about 500 to 1000 base pairs of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises no more than 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence.
In some embodiments, the template nucleic acid is an adenovirus vector, e.g., an AAV vector, e.g., a ssDNA molecule of a length and sequence that allows it to be packaged in an AAV capsid. The vector may be, e.g., less than 5 kb and may contain an ITR sequence that promotes packaging into the capsid. The vector may be integration-deficient. In some embodiments, the template nucleic acid comprises about 150 to 1000 nucleotides of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at most 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid is a lentiviral vector, e.g., an IDLV (integration deficiency lentivirus). In some embodiments, the template nucleic acid comprises about 500 to 1000 base pairs of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises no more than 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5' of the nick or replacement sequence, 3' of the nick or replacement sequence, or both 5' and 3' of the nick or replacement sequence.
In many embodiments, the template nucleic acid comprises one or more mutations, e.g., silent mutations, that prevent Cas9 from recognizing and cleaving the template nucleic acid. The template nucleic acid may comprise, e.g., at least 1, 2, 3, 4, 5, 10, 20, or 30 silent mutations relative to the corresponding sequence in the genome of the cell to be altered. In embodiments, the template nucleic acid comprises at most 2, 3, 4, 5, 10, 20, 30, or 50 silent mutations relative to the corresponding sequence in the genome of the cell to be altered.
In an embodiment, the template nucleic acid alters the structure of the target position by participating in a homology directed repair event. In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.
Typically, the template sequence undergoes a breakage mediated or catalyzed
recombination with the target sequence. In an embodiment, the template nucleic acid includes sequence that corresponds to a site on the target sequence that is cleaved by an eaCas9 mediated cleavage event. In an embodiment, the template nucleic acid includes sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas9 mediated event, and a second site on the target sequence that is cleaved in a second Cas9 mediated event.
In an embodiment, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation.
In other embodiments, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5' or 3' non-translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element.
A template nucleic acid having homology with a target position can be used to alter the structure of a target sequence. The template sequence can be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide.
Exemplary template nucleic acids (also referred to herein as donor constructs) to correction a mutation, e.g., at E6, e.g., E6V, in the HBB gene, are provided.
Suitable sequence for the 5' homology arm can be selected from (e.g., includes a portion of) or include the following sequence:
ATAGGAACTTGAATCAAGGAAATGATTTTAAAACGCAGTATTCTTAGTGGACTAGA
GGAAAAAAATAATCTGAGCCAAGTAGAAGACCTTTTCCCCTCCTACCCCTACTTTCT
AAGTCACAGAGGCTTTTTGTTCCCCCAGACACTCTTGCAGATTAGTCCAGGCAGAAA
CAGTTAGATGTCCCCAGTTAACCTCCTATTTGACACCACTGATTACCCCATTGATAGT
CACACTTTGGGTTGTAAGTGACTTTTTATTTATTTGTATTTTTGACTGCATTAAGAGG
TCTCTAGTTTTTTATCTCTTGTTTCCCAAAACCTAATAAGTAACTAATGCACAGAGCA
CATTGATTTGTATTTATTCTATTTTTAGACATAATTTATTAGCATGCATGAGCAAATT
AAGAAAAACAACAACAAATGAATGCATATATATGTATATGTATGTGTGTATATATAC
ACACATATATATATATATTTTTTCTTTTCTTACCAGAAGGTTTTAATCCAAATAAGGA
GAAGATATGCTTAGAACCGAGGTAGAGTTTTCATCCATTCTGTCCTGTAAGTATTTT
GCATATTCTGGAGACGCAGGAAGAGATCCATCTACATATCCCAAAGCTGAATTATG
GTAGACAAAACTCTTCCACTTTTAGTGCATCAACTTCTTATTTGTGTAATAAGAAAAT
TGGGAAAACGATCTTCAATATGCTTACCAAGCTGTGATTCCAAATATTACGTAAATA
CACTTGCAAAGGAGGATGTTTTTAGTAGCAATTTGTACTGATGGTATGGGGCCAAGA
GATATATCTTAGAGGGAGGGCTGAGGGTTTGAAGTCCAACTCCTAAGCCAGTGCCA
GAAGAGCCAAGGACAGGTACGGCTGTCATCACTTAGACCTCACCCTGTGGAGCCAC
ACCCTAGGGTTGGCCAATCTACTCCCAGGAGCAGGGAGGGCAGGAGCCAGGGCTGG GCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACTGTG
TTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCTG
SEQ ID NO: 16257 (5Ή arm)
Suitable sequence for the 3' homology arm can be selected from (e.g., includes a portion of) or include the following sequence:
GGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTG GTGAGGCCCTGGGCAGGTTGGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAAT AGAAACTGGGCATGTGGAGACAGAGAAGACTCTTGGGTTTCTGATAGGCACTGACT CTCTCTGCCTATTGGTCTATTTTCCCACCCTTAGGCTGCTGGTGGTCTACCCTTGGAC CCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAAC CCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCT CACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAA GCTGCACGTGGATCCTGAGAACTTCAGGGTGAGTCTATGGGACGCTTGATGTTTTCT TTCCCCTTCTTTTCTATGGTTAAGTTCATGTCATAGGAAGGGGATAAGTAACAGGGT ACAGTTTAGAATGGGAAACAGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATC GTTTTAGTTTCTTTTATTTGCTGTTCATAACAATTGTTTTCTTTTGTTTAATTCTTGCTT TCTTTTTTTTTCTTCTCCGCAATTTTTACTATTATACTTAATGCCTTAACATTGTGTAT AACAAAAGGAAATATCTCTGAGATACATTAAGTAACTTAAAAAAAAACTTTACACA GTCTGCCTAGTACATTACTATTTGGAATATATGTGTGCTTATTTGCATATTCATAATC TCCCTACTTTATTTTCTTTTATTTTTAATTGATACATAATCATTATACATATTTATGGG TTAAAGTGTAATGTTTTAATATGTGTACACATATTGACCAAATCAGGGTAATTTTGC ATTTGTAATTTTAAAAAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCT AATACTTTCCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATGCCTCT TTGCACCATTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGGCAATAGCAATATC TCTGCATATAAATATTTCTGCATATAAATTGTAACTG SEQ ID NO: 16258 (3Ή arm)
In an embodiment, the replacement sequence comprises or consists of an adenine (A) residue to correct the amino acid sequence to a glutamic acid (E) residue.
In an embodiment, to correct a mutation, e.g., at E6, e.g., E6V, in the HBB gene, the homology arms, e.g., the 5' and 3' homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1100 bp of sequence on either side of the mutation). The 5' homology arm is shown as bold sequence, codon 6 is shown as underlined sequence, the inserted base to correct the mutation at E6, e.g., E6V, is shown as boxed sequence, and the 3' homology arm is shown as no emphasis sequence.
ATAGGAACTTGAATCAAGGAAATGATTTTAAAACGCAGTATTCTTAGTGGACTA
GAGGAAAAAAATAATCTGAGCCAAGTAGAAGACCTTTTCCCCTCCTACCCCTAC
TTTCTAAGTCACAGAGGCTTTTTGTTCCCCCAGACACTCTTGCAGATTAGTCCA
GGCAGAAACAGTTAGATGTCCCCAGTTAACCTCCTATTTGACACCACTGATTAC
CCCATTGATAGTCACACTTTGGGTTGTAAGTGACTTTTTATTTATTTGTATTTTT
GACTGCATTAAGAGGTCTCTAGTTTTTTATCTCTTGTTTCCCAAAACCTAATAA
GTAACTAATGCACAGAGCACATTGATTTGTATTTATTCTATTTTTAGACATAATT
TATTAGCATGCATGAGCAAATTAAGAAAAACAACAACAAATGAATGCATATATA
TGTATATGTATGTGTGTATATATACACACATATATATATATATTTTTTCTTTTCT
TACCAGAAGGTTTTAATCCAAATAAGGAGAAGATATGCTTAGAACCGAGGTAG
AGTTTTCATCCATTCTGTCCTGTAAGTATTTTGCATATTCTGGAGACGCAGGAA
GAGATCCATCTACATATCCCAAAGCTGAATTATGGTAGACAAAACTCTTCCACT
TTTAGTGCATCAACTTCTTATTTGTGTAATAAGAAAATTGGGAAAACGATCTTC
AATATGCTTACCAAGCTGTGATTCCAAATATTACGTAAATACACTTGCAAAGGA
GGATGTTTTTAGTAGCAATTTGTACTGATGGTATGGGGCCAAGAGATATATCTT
AGAGGGAGGGCTGAGGGTTTGAAGTCCAACTCCTAAGCCAGTGCCAGAAGAGC
CAAGGACAGGTACGGCTGTCATCACTTAGACCTCACCCTGTGGAGCCACACCC
TAGGGTTGGCCAATCTACTCCCAGGAGCAGGGAGGGCAGGAGCCAGGGCTGG
GCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACT
GTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCTGgGGAGA
AGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTGGTGAG
GCCCTGGGCAGGTTGGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAAA
CTGGGCATGTGGAGACAGAGAAGACTCTTGGGTTTCTGATAGGCACTGACTCTCTCT
GCCTATTGGTCTATTTTCCCACCCTTAGGCTGCTGGTGGTCTACCCTTGGACCCAGAG
GTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAG
GTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTG
GACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCA
CGTGGATCCTGAGAACTTCAGGGTGAGTCTATGGGACGCTTGATGTTTTCTTTCCCCT TCTTTTCTATGGTTAAGTTCATGTCATAGGAAGGGGATAAGTAACAGGGTACAGTTT AGAATGGGAAACAGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAG TTTCTTTTATTTGCTGTTCATAACAATTGTTTTCTTTTGTTTAATTCTTGCTTTCTTTTT TTTTCTTCTCCGCAATTTTTACTATTATACTTAATGCCTTAACATTGTGTATAACAAA AGGAAATATCTCTGAGATACATTAAGTAACTTAAAAAAAAACTTTACACAGTCTGCC TAGTACATTACTATTTGGAATATATGTGTGCTTATTTGCATATTCATAATCTCCCTAC TTTATTTTCTTTTATTTTTAATTGATACATAATCATTATACATATTTATGGGTTAAAGT GTAATGTTTTAATATGTGTACACATATTGACCAAATCAGGGTAATTTTGCATTTGTAA TTTTAAAAAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCTAATACTTT CCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATGCCTCTTTGCACCA TTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGGCAATAGCAATATCTCTGCATA TAAATATTTCTGCATATAAATTGTAACTG (Template Construct 1; SEQ ID NO: 16259) As described below in Table 27, shorter homology arms, e.g., 5' and/or 3' homology arms may be used.
It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats, LINE elements. For example, a 5' homology arm may be shortened to avoid a sequence repeat element. In another embodiment, a 3' homology arm may be shortened to avoid a sequence repeat element. In an embodiment, both the 5' and the 3' homology arms may be shortened to avoid including certain sequence repeat elements.
It is contemplated herein that template nucleic acids for correcting a mutation may designed for use as a single- stranded oligonucleotide (ssODN). When using a ssODN, 5' and 3' homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made.
In an embodiment, an ssODN may be used to correct a mutation, e.g., E6V in the HBB gene. For example, the ssODN may include 50 bp 5' and 3' homology arms as shown below. The 5' homology arm is shown as bold sequence, codon 6 is shown as underlined sequence, the inserted base to correct the E6V mutation is shown as boxed sequence, and the 3' homology arm is shown as no emphasis sequence. ACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCT
G0GGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGT (Template Construct 2; SEQ ID NO: 16260)
Silent mutations in donor construct
It is contemplated herein that Cas9 could potentially cleave donor constructs either prior to or following homology directed repair (e.g., homologous recombination), resulting in a possible non-homologous-end-joining event and further DNA sequence mutation at the chromosomal locus of interest. Therefore, to avoid cleavage of the donor sequence before and/or after Cas9-mediated homology directed repair, alternate versions of the donor sequence may be used where silent mutations are introduced. These silent mutations may disrupt Cas9 binding and cleavage, but not disrupt the amino acid sequence of the repaired gene. For example, mutations may include those made to a donor sequence to repair the HBB gene, the mutant form of which can cause Sickle Cell Disease. If gRNA HBB-6 with the 20-base target sequence CGUUACUGCCCUGUGGGGCA is used to insert a donor sequence including
CTCCTGAGGAGAAGTCTGC|CGTTACTGCCCTGTGGGGCA|AGgGTGAACGTGGA
TGAAGT (SEQ ID NO: 16297), where the italic A is the base being corrected and the bracketed bases are those that match the guide RNA, the donor sequence may be changed to
CTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGaTGAACGTGGAT
GAAGT (SEQ ID NO: 16298), where the lowercase a has been changed from a G (lower case g in sequence ID xxx) at that position so that codon 15 still codes for the amino acid Arginine but the PAM sequence AGG has been modified to AGA to reduce or eliminate Cas9 cleavage at that locus.
Table 27 below provides exemplary template nucleic acids. In an embodiment, the template nucleic acid includes the 5' homology arm and the 3' homology arm of a row from Table 27. In another embodiment, a 5' homology arm from the first column can be combined with a 3' homology arm from Table 27. In each embodiment, a combination of the 5' and 3' homology arms include a replacement sequence, e.g., an adenine (A) residue.
Table 27
5' homology arm (the number of Replacement 3' homology arm (the number of nucleotides from SEQ ID NO: 5Ή, Sequence=A nucleotides from SEQ ID NO: 3Ή, beginning at the 3' end of SEQ ID beginning at the 5' end of SEQ ID NO: 5Ή) NO: 3Ή)
10 or more 10 or more
20 or more 20 or more
50 or more 50 or more
100 or more 100 or more
150 or more 150 or more
200 or more 200 or more
250 or more 250 or more
300 or more 300 or more
350 or more 350 or more
400 or more 400 or more
450 or more 450 or more
500 or more 500 or more
550 or more 550 or more
600 or more 600 or more
650 or more 650 or more
700 or more 700 or more
750 or more 750 or more
800 or more 800 or more
850 or more 850 or more
900 or more 900 or more
1000 or more 1000 or more
1100 or more 1100 or more
1200 or more 1200 or more
1300 or more 1300 or more
1400 or more 1400 or more
1500 or more 1500 or more
1600 or more 1600 or more 1700 or more 1700 or more
1800 or more 1800 or more
1900 or more 1900 or more
1200 or more 1200 or more
At least 50 but not long enough to At least 50 but not long enough to include a repeated element. include a repeated element.
At least 100 but not long enough to At least 100 but not long enough to include a repeated element. include a repeated element.
At least 150 but not long enough to At least 150 but not long enough to include a repeated element. include a repeated element.
5 to 100 nucleotides 5 to 100 nucleotides
10 to 150 nucleotides 10 to 150 nucleotides
20 to 150 nucleotides 20 to 150 nucleotides
Template Construct No. 1
Template Construct No. 2
V.2 NHEJ Approaches for Gene Targeting
As described herein, nuclease-induced non-homologous end-joining (NHEJ) can be used to target gene-specific knockouts. Nuclease-induced NHEJ can also be used to remove (e.g., delete) sequences in a gene of interest.
While not wishing to be bound by theory, it is believed that, in an embodiment, the genomic alterations associated with the methods described herein rely on nuclease-induced NHEJ and the error-prone nature of the NHEJ repair pathway. NHEJ repairs a double-strand break in the DNA by joining together the two ends; however, generally, the original sequence is restored only if two compatible ends, exactly as they were formed by the double-strand break, are perfectly ligated. The DNA ends of the double-strand break are frequently the subject of enzymatic processing, resulting in the addition or removal of nucleotides, at one or both strands, prior to rejoining of the ends. This results in the presence of insertion and/or deletion (indel) mutations in the DNA sequence at the site of the NHEJ repair. Two-thirds of these mutations typically alter the reading frame and, therefore, produce a non-functional protein. Additionally, mutations that maintain the reading frame, but which insert or delete a significant amount of sequence, can destroy functionality of the protein. This is locus dependent as mutations in critical functional domains are likely less tolerable than mutations in non-critical regions of the protein.
The indel mutations generated by NHEJ are unpredictable in nature; however, at a given break site certain indel sequences are favored and are over represented in the population, likely due to small regions of microhomology. The lengths of deletions can vary widely; most commonly in the 1-50 bp range, but they can reach greater than 100-200 bp. Insertions tend to be shorter and often include short duplications of the sequence immediately surrounding the break site. However, it is possible to obtain large insertions, and in these cases, the inserted sequence has often been traced to other regions of the genome or to plasmid DNA present in the cells.
Because NHEJ is a mutagenic process, it can also be used to delete small sequence motifs (e.g., motifs less than or equal to 50 nucleotides in length) as long as the generation of a specific final sequence is not required. If a double- strand break is targeted near to a target sequence, the deletion mutations caused by the NHEJ repair often span, and therefore remove, the unwanted nucleotides. For the deletion of larger DNA segments, introducing two double-strand breaks, one on each side of the sequence, can result in NHEJ between the ends with removal of the entire intervening sequence. In this way, DNA segments as large as several hundred kilobases can be deleted. Both of these approaches can be used to delete specific DNA sequences; however, the error-prone nature of NHEJ may still produce indel mutations at the site of repair.
Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate NHEJ- mediated indels. NHEJ-mediated indels targeted to the the gene, e.g., a coding region, e.g., an early coding region of a gene, of interest can be used to knockout (i.e., eliminate expression of) a gene of interest. For example, early coding region of a gene of interest includes sequence immediately following a start codon, within a first exon of the coding sequence, or within 500 bp of the start codon (e.g., less than 500, 450, 400, 350, 300, 250, 200, 150, 100 or 50 bp).
Placement of double strand or single strand breaks relative to the target position
In an embodiment, in which a gRNA and Cas9 nuclease generate a double strand break for the purpose of inducing NHEJ-mediated indels, a gRNA, e.g., a unimolecular (or chimeric) or modular gRNA molecule, is configured to position one double-strand break in close proximity to a nucleotide of the target position. In an embodiment, the cleavage site is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position).
In an embodiment, in which two gRNAs complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing NHEJ-mediated indels, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position two single-strand breaks to provide for NHEJ repair a nucleotide of the target position. In an embodiment, the gRNAs are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, essentially mimicking a double strand break. In an embodiment, the closer nick is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position), and the two nicks are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). In an embodiment, the gRNAs are configured to place a single strand break on either side of a nucleotide of the target position.
Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate breaks both sides of a target position. Double strand or paired single strand breaks may be generated on both sides of a target position to remove the nucleic acid sequence between the two cuts (e.g., the region between the two breaks in deleted). In one embodiment, two gRNAs, e.g.,
independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single strand breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently,
unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single strand breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp).
V.3 Targeted Knockdown
Unlike CRISPR/Cas-mediated gene knockout, which permanently eliminates expression by mutating the gene at the DNA level, CRISPR/Cas knockdown allows for temporary reduction of gene expression through the use of artificial transcription factors. Mutating key residues in both DNA cleavage domains of the Cas9 protein (e.g. the DIOA and H840A mutations) results in the generation of a catalytically inactive Cas9 (eiCas9 which is also known as dead Cas9 or dCas9) molecule. A catalytically inactive Cas9 complexes with a gRNA and localizes to the DNA sequence specified by that gRNA's targeting domain, however, it does not cleave the target DNA. Fusion of the dCas9 to an effector domain, e.g., a transcription repression domain, enables recruitment of the effector to any DNA site specified by the gRNA. Although an enxymatically inactive (eiCas9) Cas9 molecule itself can block transcription when recruited to early regions in the coding sequence, more robust repression can be achieved by fusing a transcriptional repression domain (for example KRAB, SID or ERD) to the Cas9 and recruiting it to the target knockdown position, e.g., within lOOObp of sequence 3' of the start codon or within 500 bp of a promoter region 5' of the start codon of a gene. It is likely that targeting DNAsel hypersensitive sites (DHSs) of the promoter may yield more efficient gene repression or activation because these regions are more likely to be accessible to the Cas9 protein and are also more likely to harbor sites for endogenous transcription factors. Especially for gene repression, it is contemplated herein that blocking the binding site of an endogenous transcription factor would aid in downregulating gene expression. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status. In an embodiment, a gRNA molecule can be targeted to a known transcription response elements (e.g., promoters, enhancers, etc.), a known upstream activating sequences (UAS), and/or sequences of unknown or known function that are suspected of being able to control expression of the target DNA.
CRISPR/Cas-mediated gene knockdown can be used to reduce expression of an unwanted allele or transcript. Contemplated herein are scenarios wherein permanent destruction of the gene is not ideal. In these scenarios, site-specific repression may be used to temporarily reduce or eliminate expression. It is also contemplated herein that the off-target effects of a Cas- repressor may be less severe than those of a Cas-nuclease as a nuclease can cleave any DNA sequence and cause mutations whereas a Cas-repressor may only have an effect if it targets the promoter region of an actively transcribed gene. However, while nuclease-mediated knockout is permanent, repression may only persist as long as the Cas-repressor is present in the cells. Once the repressor is no longer present, it is likely that endogenous transcription factors and gene regulatory elements would restore expression to its natural state.
V.4 Single- Strand Annealing
Single strand annealing (SSA) is another DNA repair process that repairs a double-strand break between two repeat sequences present in a target nucleic acid. Repeat sequences utilized by the SSA pathway are generally greater than 30 nucleotides in length. Resection at the break ends occurs to reveal repeat sequences on both strands of the target nucleic acid. After resection, single strand overhangs containing the repeat sequences are coated with RPA protein to prevent the repeats sequences from inappropriate annealing, e.g., to themselves. RAD52 binds to and each of the repeat sequences on the overhangs and aligns the sequences to enable the annealing of the complementary repeat sequences. After annealing, the single-strand flaps of the overhangs are cleaved. New DNA synthesis fills in any gaps, and ligation restores the DNA duplex. As a result of the processing, the DNA sequence between the two repeats is deleted. The length of the deletion can depend on many factors including the location of the two repeats utilized, and the pathway or processivity of the resection.
In contrast to HDR pathways, SSA does not require a template nucleic acid to alter or correct a target nucleic acid sequence. Instead, the complementary repeat sequence is utilized. V. 5 Other DNA Repair Pathways
SSBR (single strand break repair)
Single- stranded breaks (SSB) in the genome are repaired by the SSBR pathway, which is a distinct mechanism from the DSB repair mechanisms discussed above. The SSBR pathway has four major stages: SSB detection, DNA end processing, DNA gap filling, and DNA ligation. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
In the first stage, when a SSB forms, PARP1 and/or PARP2 recognize the break and recruit repair machinery. The binding and activity of PARP1 at DNA breaks is transient and it seems to accelerate SSBr by promoting the focal accumulation or stability of SSBr protein complexes at the lesion. Arguably the most important of these SSBr proteins is XRCC1, which functions as a molecular scaffold that interacts with, stabilizes, and stimulates multiple enzymatic components of the SSBr process including the protein responsible for cleaning the DNA 3' and 5' ends. For instance, XRCC1 interacts with several proteins (DNA polymerase beta, PNK, and three nucleases, APE1, APTX, and APLF) that promote end processing. APE1 has endonuclease activity. APLF exhibits endonuclease and 3' to 5' exonuclease activities. APTX has endonuclease and 3' to 5' exonuclease activity.
This end processing is an important stage of SSBR since the 3'- and/or 5 '-termini of most, if not all, SSBs are 'damaged'. End processing generally involves restoring a damaged 3'- end to a hydroxylated state and and/or a damaged 5' end to a phosphate moiety, so that the ends become ligation-competent. Enzymes that can process damaged 3' termini include PNKP, APE1, and TDP1. Enzymes that can process damaged 5' termini include PNKP, DNA polymerase beta, and APTX. LIG3 (DNA ligase III) can also participate in end processing. Once the ends are cleaned, gap filling can occur.
At the DNA gap filling stage, the proteins typically present are PARP1, DNA polymerase beta, XRCC1, FEN1 (flap endonculease 1), DNA polymerase delta/epsilon, PCNA, and LIG1. There are two ways of gap filling, the short patch repair and the long patch repair. Short patch repair involves the insertion of a single nucleotide that is missing. At some SSBs, "gap filling" might continue displacing two or more nucleotides (displacement of up to 12 bases have been reported). FEN1 is an endonuclease that removes the displaced 5'-residues. Multiple DNA polymerases, including Pol β , are involved in the repair of SSBs, with the choice of DNA polymerase influenced by the source and type of SSB.
In the fourth stage, a DNA ligase such as LIGl (Ligase I) or LIG3 (Ligase III) catalyzes joining of the ends. Short patch repair uses Ligase III and long patch repair uses Ligase I.
Sometimes, SSBR is replication-coupled. This pathway can involve one or more of CtIP, MRN, ERCCl, and FENl. Additional factors that may promote SSBR include: aPARP, PARP1, PARP2, PARG, XRCC1, DNA polymerase b, DNA polymerase d, DNA polymerase e, PCNA, LIGl, PNK, PNKP, APEl, APTX, APLF, TDPl, LIG3, FENl, CtIP, MRN, and ERCCl.
MMR (mismatch repair)
Cells contain three excision repair pathways: MMR, BER, and NER. The excision repair pathways hace a common feature in that they typically recognize a lesion on one strand of the DNA, then exo/endonucleaseases remove the lesion and leave a 1-30 nucleotide gap that is sub- sequentially filled in by DNA polymerase and finally sealed with ligase. A more complete picture is given in Li, Cell Research (2008) 18:85-98, and a summary is provided here.
Mismatch repair (MMR) operates on mispaired DNA bases.
The MSH2/6 or MSH2/3 complexes both have ATPases activity that plays an important role in mismatch recognition and the initiation of repair. MSH2/6 preferentially recognizes base- base mismatches and identifies mispairs of 1 or 2 nucleotides, while MSH2/3 preferentially recognizes larger ID mispairs.
hMLHl heterodimerizes with hPMS2 to form hMutL which possesses an ATPase activity and is important for multiple steps of MMR. It possesses a PCNA/replication factor C (RFC)-dependent endonuclease activity which plays an important role in 3 ' nick-directed MMR involving EXOl. (EXOl is a participant in both HR and MMR.) It regulates termination of mismatch-provoked excision. Ligase I is the relevant ligase for this pathway. Additional factors that may promote MMR include: EXOl, MSH2, MSH3, MSH6, MLH1, PMS2, MLH3, DNA Pol d, RPA, HMGB1, RFC, and DNA ligase I.
Base excision repair (BER)
The base excision repair (BER) pathway is active throughout the cell cycle; it is responsible primarily for removing small, non-helix-distorting base lesions from the genome. In contrast, the related Nucleotide Excision Repair pathway (discussed in the next section) repairs bulky helix-distorting lesions. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
Upon DNA base damage, base excision repair (BER) is initiated and the process can be simplified into five major steps: (a) removal of the damaged DNA base; (b) incision of the subsequent a basic site; (c) clean-up of the DNA ends; (d) insertion of the correct nucleotide into the repair gap; and (e) ligation of the remaining nick in the DNA backbone. These last steps are similar to the SSBR.
In the first step, a damage- specific DNA glycosylase excises the damaged base through cleavage of the N-glycosidic bond linking the base to the sugar phosphate backbone. Then AP endonuclease-1 (APE1) or bifunctional DNA glycosylases with an associated lyase activity incised the phosphodiester backbone to create a DNA single strand break (SSB). The third step of BER involves cleaning-up of the DNA ends. The fourth step in BER is conducted by Pol β that adds a new complementary nucleotide into the repair gap and in the final step
XRCCl/Ligase III seals the remaining nick in the DNA backbone. This completes the short- patch BER pathway in which the majority (-80%) of damaged DNA bases are repaired.
However, if the 57 -ends in step 3 are resistant to end processing activity, following one nucleotide insertion by Pol β there is then a polymerase switch to the replicative DNA polymerases, Pol δ/ε, which then add -2-8 more nucleotides into the DNA repair gap. This creates a 5 ' -flap structure, which is recognized and excised by flap endonuclease-1 (FEN-1) in association with the processivity factor proliferating cell nuclear antigen (PCNA). DNA ligase I then seals the remaining nick in the DNA backbone and completes long-patch BER. Additional factors that may promote the BER pathway include: DNA glycosylase, APE1, Polb, Pold, Pole, XRCC1, Ligase III, FEN-1, PCNA, RECQL4, WRN, MYH, PNKP, and APTX.
Nucleotide excision repair (NER)
Nucleotide excision repair (NER) is an important excision mechanism that removes bulky helix-distorting lesions from DNA. Additional details about NER are given in Marteijn et al., Nature Reviews Molecular Cell Biology 15, 465-481 (2014), and a summary is given here. NER a broad pathway encompassing two smaller pathways: global genomic NER (GG-NER) and transcription coupled repair NER (TC-NER). GG-NER and TC-NER use different factors for recognizing DNA damage. However, they utilize the same machinery for lesion incision, repair, and ligation.
Once damage is recognized, the cell removes a short single- stranded DNA segment that contains the lesion. Endonucleases XPF/ERCC1 and XPG (encoded by ERCC5) remove the lesion by cutting the damaged strand on either side of the lesion, resulting in a single-strand gap of 22-30 nucleotides. Next, the cell performs DNA gap filling synthesis and ligation. Involved in this process are: PCNA, RFC, DNA Pol δ, DNA Pol ε or DNA Pol κ, and DNA ligase I or XRCCl/Ligase III. Replicating cells tend to use DNA pol ε and DNA ligase I, while non- replicating cells tend to use DNA Pol δ, DNA Pol κ, and the XRCC1/ Ligase III complex to perform the ligation step.
NER can involve the following factors: XPA-G, POLH, XPF, ERCC1, XPA-G, and LIG1. Transcription-coupled NER (TC-NER) can involve the following factors: CSA, CSB, XPB, XPD, XPG, ERCC1, and TTDA. Additional factors that may promote the NER repair pathway include XPA-G, POLH, XPF, ERCC1, XPA-G, LIG1, CSA, CSB, XPA, XPB, XPC, XPD, XPF, XPG, TTDA, UVSSA, USP7, CETN2, RAD23B, UV-DDB, CAK subcomplex, RPA, and PCNA.
Interstrand Crosslink (ICL)
A dedicated pathway called the ICL repair pathway repairs interstrand crosslinks.
Interstrand crosslinks, or covalent crosslinks between bases in different DNA strand, can occur during replication or transcription. ICL repair involves the coordination of multiple repair processes, in particular, nucleolytic activity, translesion synthesis (TLS), and HDR. Nucleases are recruited to excise the ICL on either side of the crosslinked bases, while TLS and HDR are coordinated to repair the cut strands. ICL repair can involve the following factors:
endonucleases, e.g., XPF and RAD51C, endonucleases such as RAD51, translesion polymerases, e.g., DNA polymerase zeta and Revl), and the Fanconi anemia (FA) proteins, e.g., FancJ.
Other pathways
Several other DNA repair pathways exist in mammals.
Translesion synthesis (TLS) is a pathway for repairing a single stranded break left after a defective replication event and involves translesion polymerases, e.g., DNA pol and Revl.. Error-free postreplication repair (PRR) is another pathway for repairing a single stranded break left after a defective replication event.
V.6 Examples of gRNAs in Genome Editing Methods
gRNA molecules as described herein can be used with Cas9 molecules that generate a double strand break or a single strand break to alter the sequence of a target nucleic acid, e.g., a target position or target genetic signature. gRNA molecules useful in these methods are described below.
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) it can position, e.g., when targeting a Cas9 molecule that makes double strand breaks, a double strand break (i) within 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) it has a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; (iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus , S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
In an embodiment, the gRNA is configured such that it comprises properties: a and c.
In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i)
n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
In an embodiment, the gRNA is configured such that it comprises properties: a and c. In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c. In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i). In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA is used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
In an embodiment, the gRNA is used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at 840, e.g., the H840A.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
In an embodiment, a pair of gRNAs, e.g., a pair of chimeric gRNAs, comprising a first and a second gRNA, is configured such that they comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection; b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides;
c) for one or both:
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; or, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; d) the gRNAs are configured such that, when hybridized to target nucleic acid, they are separated by 0-50, 0-100, 0-200, at least 10, at least 20, at least 30 or at least 50 nucleotides; e) the breaks made by the first gRNA and second gRNA are on different strands; and f) the PAMs are facing outwards.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iv).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(v).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vi).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(viii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ix).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(x).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(xi).
In an embodiment, one or both of the gRNAs configured such that it comprises properties: a and c.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a, b, and c. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, d, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, d, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, d, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, d, and e.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D 10, e.g., the D10A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at H840, e.g., the H840A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation. VI. Target Cells
Cas9 molecules and gRNA molecules, e.g., a Cas9 molecule/gRNA molecule complex, can be used to manipulate a cell, e.g., to edit a target nucleic acid, in a wide variety of cells.
In an embodiment, a cell is manipulated by editing (e.g., inducing a mutation in) the HBB and/or BCLllA target genes, e.g., as described herein. In an embodiment, the expression of the HBB and/or BCLllA target genes is modulated, e.g., in vivo. In another embodiment, the expression of the HBB and/or BCLllA target genes is modulated, e.g., ex vivo.
The Cas9 and gRNA molecules described herein can be delivered to a target cell. In an embodiment, the target cell is a circulating blood cell, e.g., a reticulocyte, a myeloid progenitor cell, or a hematopoietic stem cell. In an embodiment, the target cell is a bone marrow cell (e.g., a myeloid progenitor cell, an erythroid progenitor cell, a hematopoietic stem cell, or a mesenchymal stem cell). In an embodiment, the target cell is a myeloid progenitor cell (e.g. a common myeloid progenitor (CMP) cell). In an embodiment, the target cell is an erythroid progenitor cell (e.g. a megakaryocyte erythroid progenitor (MEP) cell). In an embodiment, the target cell is a hematopoietic stem cell (e.g. a long term hematopoietic stem cell (LT-HSC), a short term hematopoietic stem cell (ST-HSC), a multipotent progenitor (MPP) cell, a lineage restricted progenitor (LRP) cell).
In an embodiment, the target cell is manipulated ex vivo by editing (e.g., inducing a mutation in) the HBB and/or BCLllA target genes and/or modulating the expression of the HBB and/or BCLllA target genes, and administered to the subject. Sources of target cells for ex vivo manipulation may include, by way of example, the subject's blood, the subject's cord blood, or the subject's bone marrow. Sources of target cells for ex vivo manipulation may also include, by way of example, heterologous donor blood, cord blood, or bone marrow.
In an embodiment, a myeloid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the myeloid progenitor cell is returned to the subject. In an embodiment, an erythroid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the erythroid progenitor cell is returned to the subject. In an embodiment, a hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the hematopoietic stem cell is returned to the subject. In an embodiment, a CD34+ hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the CD34+ hematopoietic stem cell is returned to the subject. A suitable cell can also include a stem cell such as, by way of example, an embryonic stem cell, an induced pluripotent stem cell, a hematopoietic stem cell, a neuronal stem cell and a mesenchymal stem cell. In an embodiment, the cell is an induced pluripotent stem (iPS) cell or a cell derived from an iPS cell, e.g., an iPS cell generated from the subject, modified to induce a mutation and differentiated into a clinically relevant cell such as a myeloid progenitor cell, an erythroid progenitor cell or a hematopoietic stem cell. In an embodiment, AAV is used to transduce the target cells, e.g., the target cells described herein.
Cells produced by the methods described herein may be used immediately. Alternatively, the cells may be frozen (e.g., in liquid nitrogen) and stored for later use. The cells will usually be frozen in 10% dimehtylsulfoxide (DMSO), 50% serum, 40% buffered medium, or some other such solution as is commonly used in the art to preserve cells at such freezing temperature and thawed in such a manner as commonly known in the art for thawing frozen cultured cells.
VII. Delivery, Formulations and Routes of Administration
The components, e.g., a Cas9 molecule and gRNA molecule (e.g., a Cas9
molecule/gRNA molecule complex), and a donor template nucleic acid, can be delivered or formulated in a variety of forms, see, e.g., Tables 34-35. In an embodiment, one Cas9 molecule and two or more (e.g., 2, 3, 4, or more) different gRNA molecules are delivered, e.g., by an AAV vector. In an embodiment, the sequence encoding the Cas9 molecule and the sequence(s) encoding the two or more (e.g., 2, 3, 4, or more) different gRNA molecules are present on the same nucleic acid molecule, e.g., an AAV vector. When a Cas9 or gRNA component is encoded as DNA for delivery, the DNA will typically but not necessarily include a control region, e.g., comprising a promoter, to effect expression. Useful promoters for Cas9 molecule sequences include CMV, EFS, EF-la, MSCV, PGK, CAG promoters. In an embodiment, the promoter is a constitutive promoter. In another embodiment, the promoter is a tissue specific promoter.
Useful promoters for gRNAs include HI, 7SK, tRNA, and U6 promoters. Promoters with similar or dissimilar strengths can be selected to tune the expression of components. Sequences encoding a Cas9 molecule can comprise a nuclear localization signal (NLS), e.g., an SV40 NLS. In an embodiment, the sequence encoding a Cas9 molecule comprises at least two nuclear localization signals. In an embodiment a promoter for a Cas9 molecule or a gRNA molecule can be, independently, inducible, tissue specific, or cell specific. Table 34 provides examples of how the components can be formulated, delivered, or administered.
Table 34
Figure imgf000669_0001
vitro transcribed or synthesized RNA. In this embodiment, the donor template is provided as a DNA molecule.
mRNA DNA DNA In this embodiment, a Cas9 molecule, typically an eaCas9 molecule, is translated from in vitro transcribed mRNA, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided as a separate DNA molecule. mRNA DNA In this embodiment, a Cas9 molecule, typically an eaCas9 molecule, is translated from in vitro transcribed mRNA, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided on the same DNA molecule that encodes the gRNA.
Protein DNA DNA In this embodiment, a Cas9 molecule, typically an eaCas9 molecule, is provided as a protein, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided as a separate DNA molecule.
Protein DNA In this embodiment, a Cas9 molecule, typically an eaCas9 molecule, is provided as a protein, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided on the same DNA molecule that encodes the gRNA.
Protein RNA DNA In this embodiment, an eaCas9 molecule is
provided as a protein, and a gRNA is provided as transcribed or synthesized RNA. In this embodiment, the donor template is provided as a DNA molecule.
Table 35 summarizes various delivery methods for the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, as described herein.
Table 35
Figure imgf000670_0001
Viral Retrovirus NO Stable YES RNA
Lentivirus YES Stable YES/NO with RNA
modifications
Adenovirus YES Transient NO DNA
Adeno- YES Stable NO DNA Associated
Virus (AAV)
Vaccinia Virus YES Very NO DNA
Transient
Herpes Simplex YES Stable NO DNA Virus
Non-Viral Cationic YES Transient Depends on Nucleic Acids
Liposomes what is and Proteins
delivered
Polymeric YES Transient Depends on Nucleic Acids Nanoparticles what is and Proteins
delivered
Biological Attenuated YES Transient NO Nucleic Acids Non-Viral Bacteria
Delivery Engineered YES Transient NO Nucleic Acids Vehicles Bacteriophages
Mammalian YES Transient NO Nucleic Acids
Virus-like
Particles
Biological YES Transient NO Nucleic Acids liposomes:
Erythrocyte
Ghosts and
Exosomes
DNA-based Delivery of a Cas9 molecule and/or one or more gRNA molecule and/or a donor template
Nucleic acids (e.g., DNA) encoding a Cas9 molecule (e.g., an eaCas9 molecule), a gRNA molecule, a donor template nucleic acid, or any combination (e.g., two or all) thereof, can be administered to subjects or delivered into cells by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding DNA, as well as donor template nucleic acids, can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA complexes), or a combination thereof. Donor template molecules can be administered to subjects or delivered into cells by art-known methods or as described herein. For example, donor template molecules can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA
complexes), or a combination thereof.
Nucleic acids (e.g., DNA) encoding Cas9 molecules (e.g., eaCas9 molecules) and/or gRNA molecules can be conjugated to molecules to promote uptake by the target cells (e.g., the target cells describe herein). Donor template molecules can be conjugated to molecules to promote uptake by the target cells (e.g., the target cells describe herein).
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a vector (e.g., viral vector/virus or plasmid).
A vector can comprise a sequence that encodes a Cas9 molecule and/or a gRNA molecule. A vector can also comprise a sequence encoding a signal peptide (e.g., for nuclear localization, nucleolar localization, mitochondrial localization), fused, e.g., to a Cas9 molecule sequence. For example, ae vector can comprise a nuclear localization sequence (e.g., from SV40) fused to the sequence encoding the Cas9 molecule.
One or more regulatory/control elements, e.g., a promoter, an enhancer, an intron, a polyadenylation signal, a Kozak consensus sequence, internal ribosome entry sites (IRES), a 2A sequence, and splice acceptor or donor can be included in the vectors. In an embodiment, the promoter is recognized by RNA polymerase II (e.g., a CMV promoter). In another embodiment, the promoter is recognized by RNA polymerase III (e.g., a U6 promoter). In an embodiment, the promoter is a regulated promoter (e.g., inducible promoter). In another embodiment, the promoter is a constitutive promoter. In an embodiment, the promoter is a tissue specific promoter. In an embodiment, the promoter is a viral promoter. In another embodiment, the promoter is a non-viral promoter.
In an embodiment, the vector or delivery vehicle is a viral vector (e.g., for generation of recombinant viruses). In an embodiment, the virus is a DNA virus (e.g., dsDNA or ssDNA virus). In another embodiment, the virus is an RNA virus (e.g., an ssRNA virus). Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
In an embodiment, the virus infects dividing cells. In another embodiment, the virus infects non-dividing cells. In an embodiment, the virus infects both dividing and non-dividing cells. In an embodiment, the virus can integrate into the host genome. In an embodiment, the virus is engineered to have reduced immunity, e.g., in human. In an embodiment, the virus is replication-competent. In another embodiment, the virus is replication-defective, e.g., having one or more coding regions for the genes necessary for additional rounds of virion replication and/or packaging replaced with other genes or deleted. In an embodiment, the virus causes transient expression of the Cas9 molecule and/or the gRNA molecule. In another embodiment, the virus causes long-lasting, e.g., at least 1 week, 2 weeks, 1 month, 2 months, 3 months, 6 months, 9 months, 1 year, 2 years, or permanent expression, of the Cas9 molecule and/or the gRNA molecule. The packaging capacity of the viruses may vary, e.g., from at least about 4 kb to at least about 30 kb, e.g., at least about 5 kb, 10 kb, 15 kb, 20 kb, 25 kb, 30 kb, 35 kb, 40 kb, 45 kb, or 50 kb.
In an embodiment, the viral vector recognizes a specific cell type or tissue. For example the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., genetic modification(s) of one or more viral envelope glycoproteins to incorporate a targeting ligand such as a peptide ligand, a single chain antibody, or a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., a ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
In an embodiment, the Cas9- and/or gRNA-encoding nucleic acid sequence is delivered by a recombinant retrovirus. In an embodiment, the donor template nucleic acid is delivered by recombinant retrovirus. In an embodiment, the retrovirus (e.g., Moloney murine leukemia virus comprises a reverse transcriptase, e.g., that allows integration into the host genome. In an embodiment, the retrovirus is replication-competent. In another embodiment, the retrovirus is replication-defective, e.g., having one of more coding regions for the genes necessary for additional rounds of virion replication and packaging replaced with other genes, or deleted.
In an embodiment, the Cas9- and/or gRNA-encoding nucleic acid sequence is delivered by a recombinant lentivirus. In an embodiment, the donor template nucleic acid is delivered by recombinant lentivirus. For example, the lentivirus is replication-defective, e.g., does not comprise one or more genes required for viral replication. In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant adenovirus. In an embodiment, the donor template nucleic acid is delivered by a recombinant adenovirus. In an embodiment, the adenovirus is engineered to have reduced immunity in human.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant AAV. In an embodiment, the donor template nucleic acid is delivered by a recombinant AAV. In some embodiments, the AAV does not incorporate its geneome into that of a host cell, e.g., a target cell as describe herein. In an embodiment, the AAV can incorporate its genome into that of a host cell, e.g., a target cell as described herein. In an embodiment, the AAV is a self- complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA. AAV serotypes that may be used in the disclosed methods, include AAV1, AAV2, modified AAV2 (e.g., modifications at Y444F, Y500F, Y730F and/or S662V), AAV3, modified AAV3 (e.g., modifications at Y705F, Y731F and/or T492V), AAV4, AAV5, AAV6, modified AAV6 (e.g., modifications at S663V and/or T492V), AAV8, AAV 8.2, AAV9, AAV rh 10, and pseudotyped AAV, such as AAV2/8, AAV2/5 and AAV2/6 can also be used in the disclosed methods.
In an embodiment, an AAV capsid that can be used in the methods described herein is a capsid sequence from serotype AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhlO, AAV.rh32/33, AAV.rh43, AAV.rh64Rl, or AAV7m8.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered in a re- engineered AAV capsid, e.g., with 50% or greater, e.g., 60% or greater, 70% or greater, 80% or greater, 90% or greater, or 95% or greater, sequence homology with a capsid sequence from serotypes AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhl0, AAV.rh32/33, AAV.rh43, or AAV.rh64Rl.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a chimeric AAV capsid. In an embodiment, the donor template nucleic acid is delivered by a chimeric AAV capsid. Exemplary chimeric AAV capsids include, but are not limited to, AAV9il, AAV2i8, AAV-DJ, AAV2G9, AAV2i8G9, or AAV8G9.
In an embodiment, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA. In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a hybrid virus, e.g., a hybrid of one or more of the viruses described herein. In an embodiment, the hybrid virus is hybrid of an AAV (e.g., of any AAV serotype), with a Bocavirus, B19 virus, porcine AAV, goose AAV, feline AAV, canine AAV, or MVM.
A Packaging cell is used to form a virus particle that is capable of infecting a target cell. Such a cell includes a 293 cell, which can package adenovirus, and a ψ2 cell or a PA317 cell, which can package retrovirus. A viral vector used in gene therapy is usually generated by a producer cell line that packages a nucleic acid vector into a viral particle. The vector typically contains the minimal viral sequences required for packaging and subsequent integration into a host or target cell (if applicable), with other viral sequences being replaced by an expression cassette encoding the protein to be expressed, eg. Cas9. For example, an AAV vector used in gene therapy typically only possesses inverted terminal repeat (ITR) sequences from the AAV genome which are required for packaging and gene expression in the host or target cell. The missing viral functions can be supplied in trans by the packaging cell line and/or plasmid containing E2A, E4, and VA genes from adenovirus, and plasmid encoding Rep and Cap genes from AAV, as described in "Triple Transfection Protocol." Henceforth, the viral DNA is packaged in a cell line, which contains a helper plasmid encoding the other AAV genes, namely rep and cap, but lacking ITR sequences. In embodiment, the viral DNA is packaged in a producer cell line, which contains El A and/or E1B genes from adenovirus. The cell line is also infected with adenovirus as a helper. The helper virus (e.g., adenovirus or HSV) or helper plasmid promotes replication of the AAV vector and expression of AAV genes from the helper plasmid with ITRs. The helper plasmid is not packaged in significant amounts due to a lack of ITR sequences. Contamination with adenovirus can be reduced by, e.g., heat treatment to which adenovirus is more sensitive than AAV.
In an embodiment, the viral vector has the ability of cell type and/or tissue type recognition. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., geneticmodification of the viral envelope glycoproteins to incorporate targeting ligands such as a peptide ligand, a single chain antibodie, a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
In an embodiment, the viral vector achieves cell type specific expression. For example, a tissue-specific promoter can be constructed to restrict expression of the transgene (Cas 9 and gRNA) in only the target cell. The specificity of the vector can also be mediated by microRNA- dependent control of transgene expression. In an embodiment, the viral vector has increased efficiency of fusion of the viral vector and a target cell membrane. For example, a fusion protein such as fusion-competent hemagglutin (HA) can be incorporated to increase viral uptake into cells. In an embodiment, the viral vector has the ability of nuclear localization. For example, aviruse that requires the breakdown of the nuclear envelope (during cell division) and therefore will not infect a non-diving cell can be altered to incorporate a nuclear localization peptide in the matrix protein of the virus thereby enabling the transduction of non-proliferating cells.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a non- vector based method (e.g., using naked DNA or DNA complexes). For example, the DNA can be delivered, e.g., by organically modified silica or silicate (Ormosil), electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., Nano Lett 12: 6322-27), gene gun, sonoporation, magnetofection, lipid-mediated transfection, dendrimers, inorganic nanoparticles, calcium phosphates, or a combination thereof.
In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9- and/or gRNA-encoding DNA in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9-and/or gRNA-encoding DNA in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a combination of a vector and a non- vector based method. In an embodiment, the donor template nucleic acid is delivered by a combination of a vector and a non- vector based method. For example, a virosome comprises a liposome combined with an inactivated virus (e.g., HIV or influenza virus), which can result in more efficient gene transfer, e.g., in a respiratory epithelial cell than either a viral or a liposomal method alone. In an embodiment, the delivery vehicle is a non- viral vector. In an embodiment, the non- viral vector is an inorganic nanoparticle. Exemplary inorganic nanoparticles include, e.g., magnetic nanoparticles (e.g., Fe3Mn02) or silica. The outer surface of the nanoparticle can be conjugated with a positively charged polymer (e.g., polyethylenimine, polylysine, polyserine) which allows for attachment (e.g., conjugation or entrapment) of payload. In an embodiment, the non-viral vector is an organic nanoparticle (e.g., entrapment of the payload inside the nanoparticle). Exemplary organic nanoparticles include, e.g., SNALP liposomes that contain cationic lipids together with neutral helper lipids which are coated with polyethylene glycol (PEG) and protamine and nucleic acid complex coated with lipid coating.
Exemplary lipids for gene transfer are shown below in Table 36.
Table 36. Lipids Used for Gene Transfer
Figure imgf000677_0001
l,2-Distearyloxy-N,N-dimethyl-3-aminopropane DSDMA Cationic
1 ,2-Dimyristoyl-trimethylammonium propane DMTAP Cationic
0,0' -Dimyristyl-N-lysyl aspartate DMKE Cationic l,2-Distearoyl-sn-glycero-3-ethylphosphocholine DSEPC Cationic
N-Palmitoyl D-erythro-sphingosyl carbamoyl- spermine CCS Cationic
N-t-Butyl-N0-tetradecyl-3-tetradecylaminopropionamidine diC14-amidine Cationic
Octadecenolyoxy[ethyl-2-heptadecenyl-3 hydroxyethyl] DOTIM Cationic imidazolinium chloride
Nl-Cholesteryloxycarbonyl-3,7-diazanonane- l,9-diamine CD AN Cationic
2-(3-[Bis(3-amino-propyl)-amino]propylamino)-N- RPR209120 Cationic ditetradecylcarbamoylme-ethyl-acetamide
Exemplary polymers for gene transfer are shown below in Table 37.
Table 37. Polymers Used for Gene Transfer
Polymer Abbreviation
Poly(ethylene)glycol PEG
Polyethylenimine PEI
Dithiobis(succinimidylpropionate) DSP
Dimethyl-3,3'-dithiobispropionimidate DTBP
Poly(ethylene imine) biscarbamate PEIC
Poly(L-lysine) PLL
Histidine modified PLL
Poly(N-vinylpyrrolidone) PVP
Poly(propylenimine) PPI
Poly(amidoamine) PAMAM
Poly(amido ethylenimine) SS-PAEI
Triethylenetetramine TETA
Poly ( β- aminoester)
Poly(4-hydroxy-L-proline ester) PHP
Poly(allylamine)
Poly(a-[4-aminobutyl]-L-glycolic acid) PAGA
Poly(D,L-lactic-co-glycolic acid) PLGA
Poly(N-ethyl-4-vinylpyridinium bromide)
Poly (pho sphazene) s PPZ
Poly (pho sphoester) s PPE
Poly (pho sphoramidate) s PPA
Poly(N-2-hydroxypropylmethacrylamide) pHPMA
Poly (2-(dimethylamino)ethyl methacrylate) pDMAEMA
Poly(2-aminoethyl propylene phosphate) PPE-EA
Chitosan
Galactosylated chitosan
N-Dodacylated chitosan
Histone Collagen
Dextran- spermine D-SPM
In an embodiment, the vehicle has targeting modifications to increase target cell update of nanoparticles and liposomes, e.g., cell specific antigens, monoclonal antibodies, single chain antibodies, aptamers, polymers, sugars, and cell penetrating peptides. In an embodiment, the vehicle uses fusogenic and endosome-destabilizing peptides/polymers. In an embodiment, the vehicle undergoes acid-triggered conformational changes (e.g., to accelerate endosomal escape of the cargo). In an embodiment, a stimuli-cleavable polymer is used, e.g., for release in a cellular compartment. For example, disulfide-based cationic polymers that are cleaved in the reducing cellular environment can be used.
In an embodiment, the delivery vehicle is a biological non-viral delivery vehicle. In an embodiment, the vehicle is an attenuated bacterium (e.g., naturally or artificially engineered to be invasive but attenuated to prevent pathogenesis and expressing the transgene (e.g., Listeria monocytogenes, certain Salmonella strains, Bifidobacterium longum, and modified Escherichia coli), bacteria having nutritional and tissue-specific tropism to target specific tissues, bacteria having modified surface proteins to alter target tissue specificity). In an embodiment, the vehicle is a genetically modified bacteriophage (e.g., engineered phages having large packaging capacity, less immunogenic, containing mammalian plasmid maintenance sequences and having incorporated targeting ligands). In an embodiment, the vehicle is a mammalian virus-like particle. For example, modified viral particles can be generated (e.g., by purification of the "empty" particles followed by ex vivo assembly of the virus with the desired cargo). The vehicle can also be engineered to incorporate targeting ligands to alter target tissue specificity. In an embodiment, the vehicle is a biological liposome. For example, the biological liposome is a phospholipid-based particle derived from human cells (e.g., erythrocyte ghosts, which are red blood cells broken down into spherical structures derived from the subject (e.g., tissue targeting can be achieved by attachment of various tissue or cell-specific ligands), or secretory exosomes - subject (i.e., patient) derived membrane-bound nanovescicle (30 -100 nm) of endocytic origin (e.g., can be produced from various cell types and can therefore be taken up by cells without the need of for targeting ligands).
In an embodiment, one or more nucleic acid molecules (e.g., DNA molecules) other than the components of a Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component described herein, are delivered. In an embodiment, the nucleic acid molecule is delivered at the same time as one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered before or after (e.g., less than about 30 minutes, 1 hour, 2 hours, 3 hours, 6 hours, 9 hours, 12 hours, 1 day, 2 days, 3 days, 1 week, 2 weeks, or 4 weeks) one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered by a different means than one or more of the components of the Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component, are delivered. The nucleic acid molecule can be delivered by any of the delivery methods described herein. For example, the nucleic acid molecule can be delivered by a viral vector, e.g., an integration-deficient lentivirus, and the Cas9 molecule component and/or the gRNA molecule component can be delivered by electroporation, e.g., such that the toxicity caused by nucleic acids (e.g., DNAs) can be reduced. In an embodiment, the nucleic acid molecule encodes a therapeutic protein, e.g., a protein described herein. In an embodiment, the nucleic acid molecule encodes an RNA molecule, e.g., an RNA molecule described herein.
Delivery of RNA encoding a Cas9 molecule
RNA encoding Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) and/or gRNA molecules, can be delivered into cells, e.g., target cells described herein, by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding RNA can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (eg, as described in Lee, et al., 2012, Nano Lett 12: 6322-27), lipid-mediated transfection, peptide-mediated delivery, or a combination thereof. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules) promoting uptake by the target cells (e.g., target cells described herein).
In an embodiment, delivery via electroporation comprises mixing the cells with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor template nucleic acid molecules, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor template nucleic acid molecules in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
Delivery Cas9 molecule protein
Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) can be delivered into cells by art-known methods or as described herein. For example, Cas9 protein molecules can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (eg, as described in Lee, et al [2012] Nano Lett 12: 6322-27), lipid-mediated transfection, peptide- mediated delivery, or a combination thereof. Delivery can be accompanied by DNA encoding a gRNA or by a gRNA. Cas9 protein can be conjugated to molecules promoting uptake by the target cells (e.g., target cells described herein).
In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor nucleic acid, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor nucleic acid in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
Route of Administration
Systemic modes of administration include oral and parenteral routes. Parenteral routes include, by way of example, intravenous, intrarterial, intraosseous, intramuscular, intradermal, subcutaneous, intranasal and intraperitoneal routes. Components administered systemically may be modified or formulated to target the components to cells of the blood and bone marrow. Local modes of administration include, by way of example, intra-bone marrow, intrathecal, and intra-cerebroventricular routes. In an embodiment, significantly smaller amounts of the components (compared with systemic approaches) may exert an effect when administered locally (for example, intra-bone marrow) compared to when administered systemically (for example, intravenously). Local modes of administration can reduce or eliminate the incidence of potentially toxic side effects that may occur when therapeutically effective amounts of a component are administered systemically.
In an embodiment, components described herein are delivered by intra-bone marrow injection. Injections may be made directly into the bone marrow compartment of one or more than one bone. In an embodiment, nanoparticle or viral, e.g., AAV vector, delivery is via intra- bone marrow injection.
Administration may be provided as a periodic bolus or as continuous infusion from an internal reservoir or from an external reservoir (for example, from an intravenous bag).
Components may be administered locally, for example, by continuous release from a sustained release drug delivery device
In addition, components may be formulated to permit release over a prolonged period of time. A release system can include a matrix of a biodegradable material or a material which releases the incorporated components by diffusion. The components can be homogeneously or heterogeneously distributed within the release system. A variety of release systems may be useful, however, the choice of the appropriate system will depend upon rate of release required by a particular application. Both non-degradable and degradable release systems can be used. Suitable release systems include polymers and polymeric matrices, non-polymeric matrices, or inorganic and organic excipients and diluents such as, but not limited to, calcium carbonate and sugar (for example, trehalose). Release systems may be natural or synthetic. However, synthetic release systems are preferred because generally they are more reliable, more reproducible and produce more defined release profiles. The release system material can be selected so that components having different molecular weights are released by diffusion through or degradation of the material.
Representative synthetic, biodegradable polymers include, for example: polyamides such as poly(amino acids) and poly(peptides); polyesters such as poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), and poly(caprolactone); poly(anhydrides); polyorthoesters; polycarbonates; and chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof. Representative synthetic, non- degradable polymers include, for example: polyethers such as poly(ethylene oxide),
poly(ethylene glycol), and poly(tetramethylene oxide); vinyl polymers-polyacrylates and polymethacrylates such as methyl, ethyl, other alkyl, hydroxyethyl methacrylate, acrylic and methacrylic acids, and others such as poly(vinyl alcohol), poly(vinyl pyrolidone), and poly(vinyl acetate); poly(urethanes); cellulose and its derivatives such as alkyl, hydroxyalkyl, ethers, esters, nitrocellulose, and various cellulose acetates; polysiloxanes; and any chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof.
Poly(lactide-co-glycolide) microsphere can also be used for injection. Typically the microspheres are composed of a polymer of lactic acid and glycolic acid, which are structured to form hollow spheres. The spheres can be approximately 15-30 microns in diameter and can be loaded with components described herein.
Bi-Modal or Differential Delivery of Components
Separate delivery of the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, and more particularly, delivery of the components by differing modes, can enhance performance, e.g., by improving tissue specificity and safety.
In an embodiment, the Cas9 molecule and the gRNA molecule are delivered by different modes, or as sometimes referred to herein as differential modes. Different or differential modes, as used herein, refer modes of delivery that confer different pharmacodynamic or
pharmacokinetic properties on the subject component molecule, e.g., a Cas9 molecule, gRNA molecule, or template nucleic acid. For example, the modes of delivery can result in different tissue distribution, different half-life, or different temporal distribution, e.g., in a selected compartment, tissue, or organ.
Some modes of delivery, e.g., delivery by a nucleic acid vector that persists in a cell, or in progeny of a cell, e.g., by autonomous replication or insertion into cellular nucleic acid, result in more persistent expression of and presence of a component. Examples include viral, e.g., adeno- associated virus or lentivirus, delivery.
By way of example, the components, e.g., a Cas9 molecule and a gRNA molecule, can be delivered by modes that differ in terms of resulting half-life or persistent of the delivered component the body, or in a particular compartment, tissue or organ. In an embodiment, a gRNA molecule can be delivered by such modes. The Cas9 molecule component can be delivered by a mode which results in less persistence or less exposure to the body or a particular compartment or tissue or organ.
More generally, in an embodiment, a first mode of delivery is used to deliver a first component and a second mode of delivery is used to deliver a second component. The first mode of delivery confers a first pharmacodynamic or pharmacokinetic property. The first pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ. The second mode of delivery confers a second pharmacodynamic or pharmacokinetic property. The second pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ.
In an embodiment, the first pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure, is more limited than the second pharmacodynamic or pharmacokinetic property.
In an embodiment, the first mode of delivery is selected to optimize, e.g., minimize, a pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the second mode of delivery is selected to optimize, e.g., maximize, a pharmacodynamic or pharmcokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the first mode of delivery comprises the use of a relatively persistent element, e.g., a nucleic acid, e.g., a plasmid or viral vector, e.g., an AAV or lentivirus. As such vectors are relatively persistent product transcribed from them would be relatively persistent.
In an embodiment, the second mode of delivery comprises a relatively transient element, e.g., an RNA or protein.
In an embodiment, the first component comprises gRNA, and the delivery mode is relatively persistent, e.g., the gRNA is transcribed from a plasmid or viral vector, e.g., an AAV or lenti virus. Transcription of these genes would be of little physiological consequence because the genes do not encode for a protein product, and the gRNAs are incapable of acting in isolation. The second component, a Cas9 molecule, is delivered in a transient manner, for example as mRNA or as protein, ensuring that the full Cas9 molecule/gRNA molecule complex is only present and active for a short period of time.
Furthermore, the components can be delivered in different molecular form or with different delivery vectors that complement one another to enhance safety and tissue specificity.
Use of differential delivery modes can enhance performance, safety and efficacy. E.g., the likelihood of an eventual off-target modification can be reduced. Delivery of immunogenic components, e.g., Cas9 molecules, by less persistent modes can reduce immunogenicity, as peptides from the bacterially-derived Cas enzyme are displayed on the surface of the cell by MHC molecules. A two-part delivery system can alleviate these drawbacks.
Differential delivery modes can be used to deliver components to different, but overlapping target regions. The formation active complex is minimized outside the overlap of the target regions. Thus, in an embodiment, a first component, e.g., a gRNA molecule is delivered by a first delivery mode that results in a first spatial, e.g., tissue, distribution. A second component, e.g., a Cas9 molecule is delivered by a second delivery mode that results in a second spatial, e.g., tissue, distribution. In an embodiment, the first mode comprises a first element selected from a liposome, nanoparticle, e.g., polymeric nanoparticle, and a nucleic acid, e.g., viral vector. The second mode comprises a second element selected from the group. In an embodiment, the first mode of delivery comprises a first targeting element, e.g., a cell specific receptor or an antibody, and the second mode of delivery does not include that element. In embodiment, the second mode of delivery comprises a second targeting element, e.g., a second cell specific receptor or second antibody.
When the Cas9 molecule is delivered in a virus delivery vector, a liposome, or polymeric nanoparticle, there is the potential for delivery to and therapeutic activity in multiple tissues, when it may be desirable to only target a single tissue. A two-part delivery system can resolve this challenge and enhance tissue specificity. If the gRNA molecule and the Cas9 molecule are packaged in separated delivery vehicles with distinct but overlapping tissue tropism, the fully functional complex is only be formed in the tissue that is targeted by both vectors. Ex vivo delivery
In an embodiment, components described in Table 34 are introduced into cells which are then introduced into the subject, e.g., cells are removed from a subject, manipulated ex vivo and then introduced into the subject. Methods of introducing the components can include, e.g., any of the delivery methods described in Table 35.
VIII. Modified Nucleosides, Nucleotides, and Nucleic Acids
Modified nucleosides and modified nucleotides can be present in nucleic acids, e.g., particularly gRNA, but also other forms of RNA, e.g., mRNA, RNAi, or siRNA. As described herein, "nucleoside" is defined as a compound containing a five-carbon sugar molecule (a pentose or ribose) or derivative thereof, and an organic base, purine or pyrimidine, or a derivative thereof. As described herein, "nucleotide" is defined as a nucleoside further comprising a phosphate group.
Modified nucleosides and nucleotides can include one or more of:
(i) alteration, e.g., replacement, of one or both of the non-linking phosphate oxygens and/or of one or more of the linking phosphate oxygens in the phosphodiester backbone linkage;
(ii) alteration, e.g., replacement, of a constituent of the ribose sugar, e.g., of the 2' hydroxyl on the ribose sugar;
(iii) wholesale replacement of the phosphate moiety with "dephospho" linkers;
(iv) modification or replacement of a naturally occurring nucleobase;
(v) replacement or modification of the ribose-phosphate backbone;
(vi) modification of the 3' end or 5' end of the oligonucleotide, e.g., removal,
modification or replacement of a terminal phosphate group or conjugation of a moiety; and
(vii) modification of the sugar.
The modifications listed above can be combined to provide modified nucleosides and nucleotides that can have two, three, four, or more modifications. For example, a modified nucleoside or nucleotide can have a modified sugar and a modified nucleobase. In an
embodiment, every base of a gRNA is modified, e.g., all bases have a modified phosphate group, e.g., all are phosphorothioate groups. In an embodiment, all, or substantially all, of the phosphate groups of a unimolecular or modular gRNA molecule are replaced with phosphorothioate groups.
In an embodiment, modified nucleotides, e.g., nucleotides having modifications as described herein, can be incorporated into a nucleic acid, e.g., a "modified nucleic acid." In an embodiment, the modified nucleic acids comprise one, two, three or more modified nucleotides. In an embodiment, at least 5% (e.g., at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, or about 100%) of the positions in a modified nucleic acid are a modified nucleotides.
Unmodified nucleic acids can be prone to degradation by, e.g., cellular nucleases. For example, nucleases can hydrolyze nucleic acid phosphodiester bonds. Accordingly, in one aspect the modified nucleic acids described herein can contain one or more modified nucleosides or nucleotides, e.g., to introduce stability toward nucleases.
In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo. The term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can disrupt binding of a major groove interacting partner with the nucleic acid. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo, and also disrupt binding of a major groove interacting partner with the nucleic acid.
Definitions of Chemical Groups
As used herein, "alkyl" is meant to refer to a saturated hydrocarbon group which is straight-chained or branched. Example alkyl groups include methyl (Me), ethyl (Et), propyl (e.g., n-propyl and isopropyl), butyl (e.g., n-butyl, isobutyl, t-butyl), pentyl (e.g., n-pentyl, isopentyl, neopentyl), and the like. An alkyl group can contain from 1 to about 20, from 2 to about 20, from 1 to about 12, from 1 to about 8, from 1 to about 6, from 1 to about 4, or from 1 to about 3 carbon atoms.
As used herein, "aryl" refers to monocyclic or polycyclic (e.g., having 2, 3 or 4 fused rings) aromatic hydrocarbons such as, for example, phenyl, naphthyl, anthracenyl,
phenanthrenyl, indanyl, indenyl, and the like. In an embodiment, aryl groups have from 6 to about 20 carbon atoms.
As used herein, "alkenyl" refers to an aliphatic group containing at least one double bond.
As used herein, "alkynyl" refers to a straight or branched hydrocarbon chain containing 2-12 carbon atoms and characterized in having one or more triple bonds. Examples of alkynyl groups include, but are not limited to, ethynyl, propargyl, and 3-hexynyl.
As used herein, "arylalkyl" or "aralkyl" refers to an alkyl moiety in which an alkyl hydrogen atom is replaced by an aryl group. Aralkyl includes groups in which more than one hydrogen atom has been replaced by an aryl group. Examples of "arylalkyl" or "aralkyl" include benzyl, 2-phenylethyl, 3-phenylpropyl, 9-fluorenyl, benzhydryl, and trityl groups.
As used herein, "cycloalkyl" refers to a cyclic, bicyclic, tricyclic, or polycyclic non- aromatic hydrocarbon groups having 3 to 12 carbons. Examples of cycloalkyl moieties include, but are not limited to, cyclopropyl, cyclopentyl, and cyclohexyl.
As used herein, "heterocyclyl" refers to a monovalent radical of a heterocyclic ring system. Representative heterocyclyls include, without limitation, tetrahydrofuranyl,
tetrahydrothienyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, pyrrolinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, and morpholinyl.
As used herein, "heteroaryl" refers to a monovalent radical of a heteroaromatic ring system. Examples of heteroaryl moieties include, but are not limited to, imidazolyl, oxazolyl, thiazolyl, triazolyl, pyrrolyl, furanyl, indolyl, thiophenyl pyrazolyl, pyridinyl, pyrazinyl, pyridazinyl, pyrimidinyl, indolizinyl, purinyl, naphthyridinyl, quinolyl, and pteridinyl.
Phosphate Backbone Modifications
The Phosphate Group
In an embodiment, the phosphate group of a modified nucleotide can be modified by replacing one or more of the oxygens with a different substituent. Further, the modified nucleotide, e.g., modified nucleotide present in a modified nucleic acid, can include the wholesale replacement of an unmodified phosphate moiety with a modified phosphate as described herein. In an embodiment, the modification of the phosphate backbone can include alterations that result in either an uncharged linker or a charged linker with unsymmetrical charge distribution.
Examples of modified phosphate groups include, phosphorothioate, phosphoroselenates, borano phosphates, borano phosphate esters, hydrogen phosphonates, phosphoroamidates, alkyl or aryl phosphonates and phosphotriesters. In an embodiment, one of the non-bridging phosphate oxygen atoms in the phosphate backbone moiety can be replaced by any of the following groups: sulfur (S), selenium (Se), BR3 (wherein R can be, e.g., hydrogen, alkyl, or aryl), C (e.g., an alkyl group, an aryl group, and the like), H, NR2 (wherein R can be, e.g., hydrogen, alkyl, or aryl), or OR (wherein R can be, e.g., alkyl or aryl). The phosphorous atom in an unmodified phosphate group is achiral. However, replacement of one of the non-bridging oxygens with one of the above atoms or groups of atoms can render the phosphorous atom chiral; that is to say that a phosphorous atom in a phosphate group modified in this way is a stereogenic center. The stereogenic phosphorous atom can possess either the "R" configuration (herein Rp) or the "S" configuration (herein Sp).
Phosphorodithioates have both non-bridging oxygens replaced by sulfur. The phosphorus center in the phosphorodithioates is achiral which precludes the formation of oligoribonucleotide diastereomers. In an embodiment, modifications to one or both non-bridging oxygens can also include the replacement of the non-bridging oxygens with a group independently selected from S, Se, B, C, H, N, and OR (R can be, e.g., alkyl or aryl).
The phosphate linker can also be modified by replacement of a bridging oxygen, (i.e., the oxygen that links the phosphate to the nucleoside), with nitrogen (bridged phosphoroamidates), sulfur (bridged phosphorothioates) and carbon (bridged methylenephosphonates). The replacement can occur at either linking oxygen or at both of the linking oxygens.
Replacement of the Phosphate Group
The phosphate group can be replaced by non-phosphorus containing connectors. In an embodiment, the charge phosphate group can be replaced by a neutral moiety.
Examples of moieties which can replace the phosphate group can include, without limitation, e.g., methyl phosphonate, hydroxylamino, siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo,
methylenedimethylhydrazo and methyleneoxymethylimino.
Replacement of the Ribophosphate Backbone
Scaffolds that can mimic nucleic acids can also be constructed wherein the phosphate linker and ribose sugar are replaced by nuclease resistant nucleoside or nucleotide surrogates. In an embodiment, the nucleobases can be tethered by a surrogate backbone. Examples can include, without limitation, the morpholino, cyclobutyl, pyrrolidine and peptide nucleic acid (PNA) nucleoside surrogates.
Sugar Modifications
The modified nucleosides and modified nucleotides can include one or more
modifications to the sugar group. For example, the 2' hydroxyl group (OH) can be modified or replaced with a number of different "oxy" or "deoxy" substituents. In an embodiment, modifications to the 2' hydroxyl group can enhance the stability of the nucleic acid since the hydroxyl can no longer be deprotonated to form a 2'-alkoxide ion. The 2'-alkoxide can catalyze degradation by intramolecular nucleophilic attack on the linker phosphorus atom.
Examples of "oxy"-2' hydroxyl group modifications can include alkoxy or aryloxy (OR, wherein "R" can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or a sugar);
polyethyleneglycols (PEG), 0(CH2CH20)nCH2CH2OR wherein R can be, e.g., H or optionally substituted alkyl, and n can be an integer from 0 to 20 (e.g., from 0 to 4, from 0 to 8, from 0 to 10, from 0 to 16, from 1 to 4, from 1 to 8, from 1 to 10, from 1 to 16, from 1 to 20, from 2 to 4, from 2 to 8, from 2 to 10, from 2 to 16, from 2 to 20, from 4 to 8, from 4 to 10, from 4 to 16, and from 4 to 20). In an embodiment, the "oxy"-2' hydroxyl group modification can include
"locked" nucleic acids (LNA) in which the 2' hydroxyl can be connected, e.g., by a C1-6 alkylene or Ci-6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy, 0(CH2)n-amino, (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino). In an embodiment, the "oxy"-2' hydroxyl group modification can include the methoxyethyl group (MOE), (OCH2CH2OCH3, e.g., a PEG derivative).
"Deoxy" modifications can include hydrogen (i.e. deoxyribose sugars, e.g., at the overhang portions of partially ds RNA); halo (e.g., bromo, chloro, fluoro, or iodo); amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); NH(CH2CH2NH)nCH2CH2- amino (wherein amino can be, e.g., as described herein), -NHC(0)R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), cyano; mercapto; alkyl-thio-alkyl;
thioalkoxy; and alkyl, cycloalkyl, aryl, alkenyl and alkynyl, which may be optionally substituted with e.g., an amino as described herein.
The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified nucleic acid can include nucleotides containing e.g., arabinose, as the sugar. The nucleotide "monomer" can have an alpha linkage at the position on the sugar, e.g., alpha-nucleosides. The modified nucleic acids can also include "abasic" sugars, which lack a nucleobase at C- . These abasic sugars can also be further modified at one or more of the constituent sugar atoms. The modified nucleic acids can also include one or more sugars that are in the L form, e.g. L- nucleosides.
Generally, RNA includes the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified nucleosides and modified nucleotides can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). In an embodiment, the modified nucleotides can include multicyclic forms (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl-(3'→2')). Modifications on the Nucleobase
The modified nucleosides and modified nucleotides described herein, which can be incorporated into a modified nucleic acid, can include a modified nucleobase. Examples of nucleobases include, but are not limited to, adenine (A), guanine (G), cytosine (C), and uracil (U). These nucleobases can be modified or wholly replaced to provide modified nucleosides and modified nucleotides that can be incorporated into modified nucleic acids. The nucleobase of the nucleotide can be independently selected from a purine, a pyrimidine, a purine or pyrimidine analog. In an embodiment, the nucleobase can include, for example, naturally-occurring and synthetic derivatives of a base.
Uracil
In an embodiment, the modified nucleobase is a modified uracil. Exemplary nucleobases and nucleosides having a modified uracil include without limitation pseudouridine (ψ), pyridin- 4-one ribonucleoside, 5-aza-uridine, 6-aza-uridine, 2-thio-5-aza-uridine, 2-thio-uridine (s2U), 4- thio-uridine (s4U), 4-thio-pseudouridine, 2-thio-pseudouridine, 5 -hydroxy-uridine (ho5U), 5- aminoallyl-uridine, 5-halo-uridine (e.g., 5-iodo-uridine or 5-bromo-uridine), 3-methyl-uridine
3 5 5
(m U), 5-methoxy-uridine (mo U), uridine 5-oxyacetic acid (cmo U), uridine 5-oxyacetic acid methyl ester (mcmo5U), 5-carboxymethyl-uridine (cm5U), 1-carboxymethyl-pseudouridine, 5- carboxyhydroxymethyl-uridine (chm5U), 5-carboxyhydroxymethyl-uridine methyl ester
(mchm5U), 5-methoxycarbonylmethyl-uridine (mcm5U), 5-methoxycarbonylmethyl-2-thio- uridine (mcm5s2U), 5-aminomethyl-2-thio-uridine (nm5s2U), 5-methylaminomethyl-uridine (mnm5U), 5-methylaminomethyl-2-thio-uridine (mnm5s2U), 5-methylaminomethyl-2-seleno-
5 2 5
uridine (mnm se U), 5-carbamoylmethyl-uridine (ncm U), 5-carboxymethylaminomethyl-uridine (cmnm5U), 5-carboxymethylaminomethyl-2-thio-uridine (cmnm 5s2U), 5-propynyl-uridine, 1- propynyl-pseudouridine, 5-taurinomethyl-uridine (xcm5U), 1-taurinomethyl -pseudouridine, 5- taurinomethyl-2-thio-uridine(Tm5s2U), 1 -taurinomethyl-4-thio-pseudouridine, 5-methyl-uridine (m5U, i.e., having the nucleobase deoxythymine), 1-methyl-pseudouridine (ηι'ψ), 5-methyl-2- thio-uridine (m5s2U), l-methyl-4-thio-pseudouridine
Figure imgf000692_0001
4-thio- 1-methyl-pseudouridine, 3- methyl-pseudouridine (m ψ), 2-thio- 1-methyl-pseudouridine, 1 -methyl- 1-deaza-pseudouridine, 2-thio- l -methyl- 1-deaza-pseudouridine, dihydrouridine (D), dihydropseudouridine, 5,6- dihydrouridine, 5-methyl-dihydrouridine (m5D), 2-thio-dihydrouridine, 2-thio- dihydropseudouridine, 2-methoxy-uridine, 2-methoxy-4-thio-uridine, 4-methoxy-pseudouridine, 4- methoxy-2-thio-pseudouridine, Nl-methyl-pseudouridine, 3-(3-amino-3- carboxypropyl)uridine (acp 3 U), l-methyl-3-(3-amino-3-carboxypropyl)pseudouridine (acp 3 ψ), 5- (isopentenylaminomethyl)uridine (inm5U), 5-(isopentenylaminomethyl)-2-thio-uridine
(inm5s2U), a-thio-uridine, 2'-0-methyl-uridine (Um), 5,2'-0-dimethyl-uridine (m5Um), 2'-0- methyl-pseudouridine (ψηι), 2-thio-2'-0-methyl-uridine (s2Um), 5-methoxycarbonylmethyl-2'- O-methyl-uridine (mem 5Um), 5-carbamoylmethyl-2'-0-methyl-uridine (ncm 5Um), 5- carboxymethylaminomethyl-2'-0-methyl-uridine (cmnm 5 Um), 3,2'-0-dimethyl-uridine (m 3 Um),
5- (isopentenylaminomethyl)-2'-0-methyl-uridine (inm5Um), 1-thio-uridine, deoxythymidine, 2'- F-ara-uridine, 2'-F-uridine, 2'-OH-ara-uridine, 5-(2-carbomethoxyvinyl) uridine, 5-[3-(l-E- propenylamino)uridine, pyrazolo[3,4-d]pyrimidines, xanthine, and hypoxanthine.
Cytosine
In an embodiment, the modified nucleobase is a modified cytosine. Exemplary nucleobases and nucleosides having a modified cytosine include without limitation 5-aza- cytidine, 6-aza-cytidine, pseudoisocytidine, 3-methyl-cytidine (m C), N4-acetyl-cytidine (act), 5- formyl-cytidine (f5C), N4-methyl-cytidine (m4C), 5-methyl-cytidine (m5C), 5-halo-cytidine (e.g., 5-iodo-cytidine), 5-hydroxymethyl-cytidine (hm5C), 1-methyl-pseudoisocytidine, pyrrolo- cytidine, pyrrolo-pseudoisocytidine, 2-thio-cytidine (s2C), 2-thio-5-methyl-cytidine, 4-thio- pseudoisocytidine, 4-thio- 1-methyl-pseudoisocytidine, 4-thio-l -methyl- 1-deaza- pseudoisocytidine, 1 -methyl- 1-deaza-pseudoisocytidine, zebularine, 5-aza-zebularine, 5-methyl- zebularine, 5-aza-2-thio-zebularine, 2-thio-zebularine, 2-methoxy-cytidine, 2-methoxy- 5 -methyl- cytidine, 4-methoxy-pseudoisocytidine, 4-methoxy- 1-methyl-pseudoisocytidine, lysidine (k C), a-thio-cytidine, 2'-0-methyl-cytidine (Cm), 5,2'-0-dimethyl-cytidine (m5Cm), N4-acetyl-2'-0- methyl-cytidine (ac4Cm), N4,2'-0-dimethyl-cytidine (m4Cm), 5-formyl-2'-0-methyl-cytidine (f 5Cm), N4,N4,2'-0-trimethyl-cytidine (m4 2Cm), 1-thio-cytidine, 2'-F-ara-cytidine, 2'-F-cytidine, and 2'-OH-ara-cytidine.
Adenine
In an embodiment, the modified nucleobase is a modified adenine. Exemplary nucleobases and nucleosides having a modified adenine include without limitation 2-amino- purine, 2,6-diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo-purine (e.g., 6-chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenosine, 7-deaza-adenosine, 7- deaza-8-aza-adenosine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6- diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1 -methyl- adenosine (m A), 2-methyl- adenosine (m2A), N6-methyl-adenosine (m6A), 2-methylthio-N6-methyl-adenosine (ms2m6A), N6-isopentenyl-adenosine (i6A), 2-methylthio-N6-isopentenyl-adenosine (ms2i6A), N6-(cis- hydroxyisopentenyl)adenosine (io6A), 2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine (ms2io6A), N6-glycinylcarbamoyl-adenosine (g6A), N6-threonylcarbamoyl-adenosine (t6A), N6- methyl-N6-threonylcarbamoyl-adenosine (m6t6A), 2-methylthio-N6-threonylcarbamoyl- adenosine (ms2g6A), N6,N6-dimethyl-adenosine (m6 2A), N6-hydroxynorvalylcarbamoyl- adenosine (hn6A), 2-methylthio-N6-hydroxynorvalylcarbamoyl-adenosine (ms2hn6A), N6- acetyl-adenosine (ac6A), 7-methyl-adenosine, 2-methylthio-adenosine, 2-methoxy-adenosine, a- thio-adenosine, 2'-0-methyl-adenosine (Am), N6,2'-0-dimethyl-adenosine (m6Am), N6-Methyl- 2'-deoxyadenosine, N6,N6,2'-0-trimethyl-adenosine (m6 2Am), l,2'-0-dimethyl-adenosine (m'Am), 2'-0-ribosyladenosine (phosphate) (Ar(p)), 2-amino-N6-methyl -purine, 1 -thio- adenosine, 8-azido-adenosine, 2'-F-ara-adenosine, 2'-F-adenosine, 2'-OH-ara-adenosine, and N6- ( 19- amino-pentaoxanonadecyl) - adeno sine .
Guanine
In an embodiment, the modified nucleobase is a modified guanine. Exemplary nucleobases and nucleosides having a modified guanine include without limitation inosine (I), 1- methyl-inosine (iVl), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW), hydroxy wybuto sine (OHyW), undermodified hydroxy wybuto sine (OHyW*), 7-deaza-guanosine, queuosine (Q),
epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl-queuosine (manQ), 7-cyano-7- deaza-guanosine (preQo), 7-aminomethyl-7-deaza-guanosine (preQO, archaeosine (G+), 7-deaza- 8-aza-guanosine, 6-thio-guanosine, 6-thio-7-deaza-guanosine, 6-thio-7-deaza-8-aza-guanosine, 7-methyl-guanosine (m G), 6-thio-7-methyl-guanosine, 7-methyl-inosine, 6-methoxy-guanosine, l-methyl-guanosine (m'G), N2-methyl-guanosine (m 2 G), N2,N2-dimethyl-guanosine (m 2 2G),
N2,7-dimethyl-guanosine (m 2 ,7G), N2, N2,7-dimethyl-guanosine (m 2 ,2,7G), 8-oxo-guanosine, 7-methyl-8-oxo-guanosine, l-methyl-6- thio-guanosine, N2-methyl-6-thio-guanosine, N2,N2- dimethyl-6-thio-guanosine, a-thio-guanosine, 2'-0-methyl-guanosine (Gm), N2-methyl-2'-0- methyl-guanosine (m 2"Gm), N2,N2-dimethyl-2'-0-methyl- guano sine (m 2 2Gm), l-methyl-2'-0- methyl-guanosine (m'Gm), N2,7-dimethyl-2'-0-methyl-guanosine (m",7Gm), 2'-0-methyl- inosine (Im), l,2'-0-dimethyl-inosine (m'lm), 06-phenyl-2'-deoxyinosine, 2'-0-ribosylguanosine (phosphate) (Gr(p)), 1-thio-guanosine, 06-methyl- guanosine, 06-Methyl-2'-deoxy guanosine, z - F-ara-guanosine, and 2'-F-guanosine.
Exemplary Modified gRNAs
In some embodiments, the modified nucleic acids can be modified gRNAs. It is to be understood that any of the gRNAs described herein can be modified in accordance with this section, including any gRNA that comprises a targeting domain from Tables 1A-1D, 2A-2F, 3A- 3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
As discussed above, transiently expressed or delivered nucleic acids can be prone to degradation by, e.g., cellular nucleases. Accordingly, in one aspect the modified gRNAs described herein can contain one or more modified nucleosides or nucleotides which introduce stability toward nucleases. While not wishing to be bound by theory it is also believed that certain modified gRNAs described herein can exhibit a reduced innate immune response when introduced into a population of cells, particularly the cells of the present invention. As noted above, the term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death.
While some of the exemplary modification discussed in this section may be included at any position within the gRNA sequence, in some embodiments, a gRNA comprises a
modification at or near its 5' end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 5' end). In some embodiments, a gRNA comprises a modification at or near its 3' end (e.g., within 1-10, 1- 5, or 1-2 nucleotides of its 3' end). In some embodiments, a gRNA comprises both a
modification at or near its 5' end and a modification at or near its 3' end.
In an embodiment, the 5' end of a gRNA is modified by the inclusion of a eukaryotic mRNA cap structure or cap analog (e.g., a G(5')ppp(5 ')G cap analog, a m7G(5')ppp(5')G cap analog, or a 3 '-0-Me-m7G(5')ppp(5')G anti reverse cap analog (ARCA)). The cap or cap analog can be included during either chemical synthesis or in vitro transcription of the gRNA. In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group.
In an embodiment, the 3' end of a gRNA is modified by the addition of one or more (e.g., 25-200) adenine (A) residues. The polyA tract can be contained in the nucleic acid (e.g., plasmid, PCR product, viral genome) encoding the gRNA, or can be added to the gRNA during chemical synthesis, or following in vitro transcription using a polyadenosine polymerase (e.g., E. coli Poly(A)Polymerase).
In an embodiment, in vitro transcribed gRNA contains both a 5' cap structure or cap analog and a 3' polyA tract. In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group and comprises a 3' polyA tract.
In some embodiments, gRNAs can be modified at a 3' terminal U ribose. For example, the two terminal hydroxyl groups of the U ribose can be oxidized to aldehyde groups and a concomitant opening of the ribose ring to afford a modified nucleoside as shown below:
Figure imgf000696_0001
wherein "U" can be an unmodified or modified uridine.
In another embodiment, the 3' terminal U can be modified with a 2' 3' cyclic phosphate as shown below:
Figure imgf000696_0002
wherein "U" can be an unmodified or modified uridine.
In some embodiments, the gRNA molecules may contain 3' nucleotides which can be stabilized against degradation, e.g., by incorporating one or more of the modified nucleotides described herein. In this embodiment, e.g., uridines can be replaced with modified uridines, e.g., 5-(2-amino)propyl uridine, and 5-bromo uridine, or with any of the modified uridines described herein; adenosines and guanosines can be replaced with modified adenosines and guanosines, e.g., with modifications at the 8-position, e.g., 8-bromo guanosine, or with any of the modified adenosines or guanosines described herein.
In some embodiments, sugar-modified ribonucleotides can be incorporated into the gRNA, e.g., wherein the 2' OH-group is replaced by a group selected from H, -OR, -R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), halo, -SH, -SR (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); or cyano (-CN). In some embodiments, the phosphate backbone can be modified as described herein, e.g., with a phosphothioate group. In some embodiments, one or more of the nucleotides of the gRNA can each independently be a modified or unmodified nucleotide including, but not limited to 2' -sugar modified, such as, 2' -O-methyl, 2'-0-methoxyethyl, or 2'-Fluoro modified including, e.g., 2'-F or 2'-0-methyl, adenosine (A), 2'-F or 2' -O-methyl, cytidine (C), 2'-F or 2' -O-methyl, uridine (U), 2'-F or 2' -O-methyl, thymidine (T), 2'-F or 2'-0-methyl, guanosine (G), 2'-0-methoxyethyl-5-methyluridine (Teo), 2'-0-methoxyethyladenosine (Aeo), 2'-0-methoxyethyl-5-methylcytidine (m5Ceo), and any combinations thereof.
In some embodiments, a gRNA can include "locked" nucleic acids (LNA) in which the 2' OH-group can be connected, e.g., by a CI -6 alkylene or CI -6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy or 0(CH2)n-amino (wherein amino can be, e.g., NH2;
alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or
diheteroarylamino, ethylenediamine, or polyamino).
In some embodiments, a gRNA can include a modified nucleotide which is multicyclic (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S- GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), or threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl-(3'→2')).
Generally, gRNA molecules include the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified gRNAs can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). Although the majority of sugar analog alterations are localized to the 2' position, other sites are amenable to modification, including the 4' position. In an embodiment, a gRNA comprises a 4'-S, 4'-Se or a 4'-C- aminomethyl-2' -O-Me modification.
In some embodiments, deaza nucleotides, e.g., 7-deaza-adenosine, can be incorporated into the gRNA. In some embodiments, O- and N-alkylated nucleotides, e.g., N6-methyl adenosine, can be incorporated into the gRNA. In some embodiments, one or more or all of the nucleotides in a gRNA molecule are deoxynucleotides. miRNA binding sites
microRNAs (or miRNAs) are naturally occurring cellular 19-25 nucleotide long noncoding RNAs. They bind to nucleic acid molecules having an appropriate miRNA binding site, e.g., in the 3' UTR of an mRNA, and down-regulate gene expression. While not wishing to be bound by theory it is believed that the down regulation is either by reducing nucleic acid molecule stability or by inhibiting translation. An RNA species disclosed herein, e.g., an mRNA encoding Cas9 can comprise an miRNA binding site, e.g., in its 3 'UTR. The miRNA binding site can be selected to promote down regulation of expression is a selected cell type. By way of example, the incorporation of a binding site for miR-122, a microRNA abundant in liver, can inhibit the expression of the gene of interest in the liver.
EXAMPLES
The following Examples are merely illustrative and are not intended to limit the scope or content of the invention in any way. Example 1 : Cloning and Initial Screening of gRNAs
The suitability of candidate gRNAs can be evaluated as described in this example.
Although described for a chimeric gRNA, the approach can also be used to evaluate modular gRNAs.
Cloning gRNAs into Vectors
For each gRNA, a pair of overlapping oligonucleotides is designed and obtained.
Oligonucleotides are annealed and ligated into a digested vector backbone containing an upstream U6 promoter and the remaining sequence of a long chimeric gRNA. Plasmid is sequence-verified and prepped to generate sufficient amounts of transfection-quality DNA. Alternate promoters maybe used to drive in vivo transcription (e.g. HI promoter) or for in vitro transcription (e.g., a T7 promoter).
Cloning gRNAs in linear dsDNA molecule (STITCHR)
For each gRNA, a single oligonucleotide is designed and obtained. The U6 promoter and the gRNA scaffold (e.g. including everything except the targeting domain, e.g., including sequences derived from the crRNA and tracrRNA, e.g., including a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain) are separately PCR amplified and purified as dsDNA molecules. The gRNA- specific oligonucleotide is used in a PCR reaction to stitch together the U6 and the gRNA scaffold, linked by the targeting domain specified in the oligonucleotide. Resulting dsDNA molecule (STITCHR product) is purified for transfection. Alternate promoters may be used to drive in vivo transcription (e.g., HI promoter) or for in vitro transcription (e.g., T7 promoter). Any gRNA scaffold may be used to create gRNAs compatible with Cas9s from any bacterial species.
Initial gRNA Screen
Each gRNA to be tested is transfected, along with a plasmid expressing Cas9 and a small amount of a GFP-expressing plasmid into human cells. In preliminary experiments, these cells can be immortalized human cell lines such as 293T, K562 or U20S. Alternatively, primary human cells may be used. In this case, cells may be relevant to the eventual therapeutic cell target (for example, an erythroid cell). The use of primary cells similar to the potential therapeutic target cell population may provide important information on gene targeting rates in the context of endogenous chromatin and gene expression. Transfection may be performed using lipid transfection (such as Lipofectamine or Fugene) or by electroporation (such as Lonza Nucleofection). Following transfection, GFP expression can be determined either by fluorescence microscopy or by flow cytometry to confirm consistent and high levels of transfection. These preliminary transfections can comprise different gRNAs and different targeting approaches (17-mers, 20-mers, nuclease, dual-nickase, etc.) to determine which gRNAs/combinations of gRNAs give the greatest activity.
Efficiency of cleavage with each gRNA may be assessed by measuring NHEJ-induced indel formation at the target locus by a T7El-type assay or by sequencing. Alternatively, other mismatch- sensitive enzymes, such as Cell/Surveyor nuclease, may also be used.
For the T7E1 assay, PCR amplicons are approximately 500-700bp with the intended cut site placed asymmetrically in the amplicon. Following amplification, purification and size- verification of PCR products, DNA is denatured and re-hybridized by heating to 95 °C and then slowly cooling. Hybridized PCR products are then digested with T7 Endonuclease I (or other mismatch- sensitive enzyme) which recognizes and cleaves non-perfectly matched DNA. If indels are present in the original template DNA, when the amplicons are denatured and re- annealed, this results in the hybridization of DNA strands harboring different indels and therefore lead to double- stranded DNA that is not perfectly matched. Digestion products may be visualized by gel electrophoresis or by capillary electrophoresis. The fraction of DNA that is cleaved (density of cleavage products divided by the density of cleaved and uncleaved) may be used to estimate a percent NHEJ using the following equation: %NHEJ = (1-(1 -fraction cleaved)'72). The T7E1 assay is sensitive down to about 2-5% NHEJ.
Sequencing may be used instead of, or in addition to, the T7E1 assay. For Sanger sequencing, purified PCR amplicons are cloned into a plasmid backbone, transformed, miniprepped and sequenced with a single primer. Sanger sequencing may be used for determining the exact nature of indels after determining the NHEJ rate by T7E1.
Sequencing may also be performed using next generation sequencing techniques. When using next generation sequencing, amplicons may be 300-500bp with the intended cut site placed asymmetrically. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low NHEJ rates. Example 2: Assessment of Gene Targeting by NHEJ
The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency to generate the desired mutations (either knockout of a target gene or removal of a target sequence motif) may be determined by sequencing. For Sanger sequencing, PCR amplicons may be 500-700 bp long. For next generation sequencing, PCR amplicons may be 300-500 bp long. If the goal is to knockout gene function, sequencing may be used to assess what percent of alleles have undergone NHEJ- induced indels that result in a frameshift or large deletion or insertion that would be expected to destroy gene function. If the goal is to remove a specific sequence motif, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced deletions that span this sequence.
Example 3: Assessment of Gene Targeting by HDR
The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency can be determined by several methods.
Determination of gene targeting frequency involves measuring the percentage of alleles that have undergone homologous directed repair (HDR) with the exogenously provided donor template or endogenous genomic donor sequence and which therefore have incorporated the desired correction. If the desired HDR event creates or destroys a restriction enzyme site, the frequency of gene targeting may be determined by a RFLP assay. If no restriction site is created or destroyed, sequencing may be used to determine gene targeting frequency. If a RFLP assay is used, sequencing may still be used to verify the desired HDR event and ensure that no other mutations are present. If an exogenously provided donor template is employed, at least one of the primers is placed in the endogenous gene sequence outside of the region included in the homology arms, which prevents amplification of donor template still present in the cells.
Therefore, the length of the homology arms present in the donor template may affect the length of the PCR amplicon. PCR amplicons can either span the entire donor region (both primers placed outside the homology arms) or they can span only part of the donor region and a single junction between donor and endogenous DNA (one internal and one external primer). If the amplicons span less than the entire donor region, two different PCRs should be used to amplify and sequence both the 5' and the 3' junction.
If the PCR amplicon is short (less than 600bp) it is possible to use next generation sequencing. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low gene targeting rates.
If the PCR amplicon is too long for next generation sequencing, Sanger sequencing can be performed. For Sanger sequencing, purified PCR amplicons will be cloned into a plasmid backbone (for example, TOPO cloned using the LifeTech Zero Blunt® TOPO® cloning kit), transformed, miniprepped and sequenced.
The same or similar assays described above can be used to measure the percentage of alleles that have undergone HDR with endogenous genomic donor sequence and which therefore have incorporated the desired correction.
Example 4: Screening of gRNAs for Targeting BCL11A
In order to identify gRNAs with the highest on target NHEJ efficiency, thirty exemplary S. pyogenes gRNAs were selected for testing (Table 31). The gRNAs tested target three different regions of the BCLA11A locus - 5' of a red blood cell enhancer, 3' of a red blood cell enhancer and downstream of the ATG start codon in exon 2 (specified in Table 31).
Table 31
Figure imgf000702_0001
BCL11A-2984W AUUCACUGGAAACCCUGUUA 20 3' of enhancer 16264
BCL11A-2985W UACUGUACUGCAGGGGAAUU 20 3' of enhancer 16265
BCL11A-2986W AAACUAUUUACAGCCAUAAC 20 3' of enhancer 16266
BCL11A-2987W AAAUACUUACUGUACUGCAG 20 3' of enhancer 16267
BCL11A-2988W CUAUUUACAGCCAUAAC 17 3' of enhancer 16268
BCL11A-2989W CUACUUAUACAAUUCAC 17 3' of enhancer 16269
BCL11A-2990W CACUGGAAACCCUGUUA 17 3' of enhancer 16270
BCL11A-2991W UACUUACUGUACUGCAG 17 3' of enhancer 16271
BCL11A-2992W UGUACUGCAGGGGAAUU 17 3' of enhancer 16272
BCL11A-2993W AAUACUUACUGUACUGC 17 3' of enhancer 16273
BCL11A-2994W AUACUUACUGUACUGCA 17 3' of enhancer 16274
BCL11A-2995W GAAUGUAGAGAGGCAGA 17 5' of enhancer 16275
BCL11A-2996W GGAAUGUAGAGAGGCAG 17 5' of enhancer 16276
BCL11A-2997W GUAAGUAUUUUCUUUCAUUG 20 3' of enhancer 16277
BCL11A-2998W G U A A U U A AG A A AG C AG U G U A 20 5' of enhancer 16278
BCL11A-2999W GUAUUUUCUUUCAUUGG 17 3' of enhancer 16279
BCL11A-32W UGGCAUCCAGGUCACGCCAG 20 Exon 2 16280
BCL11A-40W GAUGCUUUUUUCAUCUCGAU 20 Exon 2 16281
BCL11A-30W GCAUCCAAUCCCGUGGAGGU 20 Exon 2 16282
BCL11A-42W UUUUCAUCUCGAUUGGUGAA 20 Exon 2 16283
BCL11A-24W CCAGAUGAACUUCCCAUUGG 20 Exon 2 16284
BCL11A-53W AGGAGGUCAUGAUCCCCUUC 20 Exon 2 16285
BCL11A-79W CAUCCAGGUCACGCCAG 17 Exon 2 16286
BCL11A-90W GCUUUUUUCAUCUCGAU 17 Exon 2 16287
BCL11A-77W UCCAAUCCCGUGGAGGU 17 Exon 2 16288
BCL11A-92W UCAUCUCGAUUGGUGAA 17 Exon 2 16289
BCL11A-71W GAUGAACUUCCCAUUGG 17 Exon 2 16290
A DNA template comprised of an exemplary gRNA (including the target region and the S. pyogenes TRACR sequence) under the control of a U6 promoter was generated by a PCR StitchR reaction. This DNA template was subsequently transfected into 293 cells using
Lipofectamine 3000 along with a DNA plasmid encoding the S. pyogenes Cas9 downstream of a CMV promoter. Genomic DNA was isolated from the cells 48-72 hours post transfection. To determine the rate of modification at the BCLllA locus, the target region was amplified using a locus PCR with the primers listed in Table 32.
Table 32
Figure imgf000703_0001
TGCCTCATTGACAAATTTGCTC (SEQ I D NO: 16292) BCL11A exon 2 3' primer
AGACCGTCTCTTTGGTGCAG (SEQ ID NO 16293) BCL11A 5' enhancer 5' primer
G C AGTG G CTTT AG G CTGTTT (SEQ ID NO 16294) BCL11A 5' enhancer 3' primer
GTGTGATCTCGGCTCACCAC (SEQ I D NO 16295) BCL11A 3' enhancer 5' primer
CCCTGACTTTGGAGCTCAGC (SEQ I D NO 16296) BCL11A 3' enhancer 3' primer
After PCR amplification, a T7E1 -directed mismatch cleavage assay was performed on the PCR product. Briefly, this assay involves melting the PCR product followed by a re- annealing step. If gene modification has occurred, there will exist double stranded products that are not perfect matches due to some frequency of insertions or deletions. These double stranded products are sensitive to cleavage by a T7 endonuclease 1 enzyme at the site of mismatch.
Therefore, the efficiency of cutting by the Cas9/gRNA complex was determined by analyzing the amount of T7E1 cleavage. The formula that was used to provide a measure of % NHEJ from the T7E1 cutting is the following: 100*(l-(l-(fraction cleaved))A0.5). The results of this analysis are shown in Fig. 11. The top performing gRNAs in this assay were BCLl 1A-2981, BCLl 1A-2983, BCLl lA-2995, BCLl lA-32, BCLl lA-30, and BCLl 1A-71.
Example 5: Deletion of the Erythroid Enhancer Elements Using Two gRNAs Flanking the Sequence
In order to test whether the erythroid enhancer sequence can be deleted using a two gRNA approach, two pairs of gRNAs were tested in 293 cells. Pair number 1 comprised
BCLl 1A-2983W and BCLl 1A-2981W while Pair number 2 comprised BCLl 1A-2995W and BCLl 1 A-2984W. In this example, a plasmid encoding S. pyogenes Cas9 downstream of a CMV promoter was delivered with either gRNA pair 1 or gRNA pair 2. The gRNAs were delivered as separate STITCHR products with each template comprising the U6 promoter, gRNA target sequence and S. pyogenes TRACR sequence. The DNA templates were delivered to 293 cells using lipid transfection (Lipofectamine 3000, Life Technologies). 72 hours post transfection, the cells were harvested and gDNA was isolated. To detect the deletion of the enhancer region of BCLl 1 A, PCR primers flanking the enhancer sequences were used to amplify the deletion event. The PCR product was TOPO cloned and sequenced by Sanger sequencing. The results of these analyses are presented in Fig. 12A-13B. As shown in Fig. 12A-13B, the deletion for both gRNA pairs that were delivered to the 293 cells were detected. Example 6: Gene Targeting of the HBB Locus by CRISPR/Cas9 to Investigate Repair Pathway Choice in Response to Different Types of DNA Lesions
The CRISPR/Cas9 system was used to target the human HBB gene in the region of the sickle cell anemia-causing mutation.
To examine how the nature of the targeted break affects the frequency of different DNA repair outcomes, blunt double-strand breaks, single-strand nicks, and dual-nicks in which the nicks are placed on opposite strands and leave either 3' or 5' overhangs of varying lengths, were introduced by utilizing the wild type Cas9 nuclease, as well as two different Cas9 nickases. Several different DNA repair outcomes including indel mutations resulting from nonhomologous end-joining, homology-dependent repair (HDR) using the donor as a template, and HDR using the closely related HBD gene as an endogenous template, were characterized using either single-strand oligonucleotide (ssODN) or plasmid DNA donors. The frequency of these various repair outcomes under different conditions offer insight into the mechanisms of DNA repair and how it is impacted by the nature of the DNA break. The data also indicates a therapeutic approach in which correction of the sickle-cell mutation is efficiently mediated through HDR with either a donor template or with the HBD gene.
In this study different gRNA for the HBB region that surrounds the nucleotides encoding the amino acid most commonly mutated in sickle cell disease had been tested in 293T cells with wild type Cas9 molecule. The gRNAs that induced similar high rates of NHEJ and had PAMs facing in opposite orientations were selected to test as pairs with Cas9 D10A and Cas9 N863A nickases.
As shown in Fig. 14, the gRNA pair 8/15 ("8gRNA'7 "15gRNA" pair) was selected as one of the best pairs of gRNA. "8gRNA" has the targeting domain sequence of
GUAACGGCAGACUUCUCCUC (SEQ ID NO: 388) and "15gRNA" has the targeting domain sequence of AAGGUGAACGUGGAUGAAGU (SEQ ID NO: 387). This pair of gRNAs in combination with the mutant Cas9 D10A would generate a 5' overhang of 47 bp, and in combination with the mutant N863A would generate a 3' overhang of 47 bp.
In this Example, U20S cells were electroporated with 200 ng of each gRNA and 750 ng of plasmid that encodes wild type Cas9 or mutant Cas9. Cells were collected 6 days after electroporation and genomic DNA was extracted. PCR amplification of the HBB locus was performed and subcloned into a Topo Blunt Vector. For each condition in each experiment 96 colonies were sequenced with Sanger sequencing. In the experiments assessing HDR efficacy, cells were electroporated with 2.5 ug of single stranded oligo or double stranded oligo in addition to the gRNA and the Cas9-encoding plasmid.
As shown in Fig. 15, the total percentages of all editing events detected by Sanger sequencing of the HBB locus were similar using wild type Cas9 or Cas9 nickases (D10A, N863A).
Figs. 16A-16B show that a majority of the total gene editing events (about 3/4 of the total) were small deletions (<10 bp). This is consistent with the notion that wildtype Cas9 generates a blunt end which are preferentially repaired by canonical NHEJ. In contrast, deletions represented only about a quarter of the total events using either nickase (D10A or N863A).
Moreover, larger deletions of -50 bp that can be mapped to the region between the two nickase sites were observed (Fig. 16A or 16C). The remaining gene-editing events were substantially different between the two nickases.
As shown in Fig. 17A, in the case of Cas9 D10A nickase which leaves a 5' protruding end, the lesion is mostly repaired through a mechanism defined as gene conversion. In gene conversion, the HBD locus will serve as a template to repair the HBB gene. HBD is a highly similar gene (92% identity with HBB) that does not carry the sickle-cell mutation (Fig. 17B). Fig. 18 shows that the majority of the HBD sequence that got incorporated in the HBB locus was in the region between the nickase cuts. In contrast, a low frequency of gene conversion was observed when the N863 nicase was used (Fig. 17A). In the case of Cas9 N863A nickase, a majority of the gene editing events were insertions in which the inserted part was a duplication of the overhangs (Figs. 19A-19B).
To test the effect that different lesions had on the engagement of HDR, a donor template was provided as a single strand oligo or as ds DNA donor. In both cases the length of the donor is approximately 170 bp with 60 bp of homology outside the nicks and with 8 mismatches (Fig. 20A). As shown in Fig. 20B, the Cas9 D10A nickase that resulted in a 5' overhang gave a significantly higher rate of HDR, especially when using the upper stand as a single-strand oligo donor. Fig. 20C shows different forms of donors (dsDNA, upper stand, and lower strand) and there contribution to HDR.
In summary, Cas9 nickases (D10A and N863A) showed comparable levels of efficacy compared to wildtype Cas9. Different DNA ends engage different repair pathways. The use of a wildtype Cas9 generates a blunt end, which are preferentially repaired by canonical NHEJ. Use of a Cas9 nickase with two gRNAs generates either 3' or 5' overhangs, which are not suitable substrates to be repaired by canonical NHEJ but can be repaired by alternative pathways.
The 5' protruding end was mostly repaired through a mechanism called gene conversion in which the HBB gene is repaired by using the HBD locus as a template. Use of nickase is advantageous to promote HDR. In the experiments in which a donor was provided, a significantly higher rate of HDR was observed using a nickase compared to the wildtype Cas9. The nature of the donor template also influences the outcome as HDR was preferentially observed when an SS Oligo was used.
Example 7: Assessment of Gene Targeting in Hematopoietic Stem Cells
Transplantation of autologous CD34+ hematopoietic stem cells (HSCs, also known as hematopoietic stem/progenitor cells or HSPCs) genetically modified to correct the Sickle Cell Disease (SCD) mutation in the human β-hemoglobin gene (HBB) would prevent deformability (sickling) after deoxygenation in the erythrocyte progeny of corrected HSCs which could ameliorate symptoms associated with SCD. Genome editing with the CRISPR/Cas9 platform precisely alters endogenous gene targets by creating an indel at the targeted cut site that can lead to knock down of gene expression at the edited locus. In this Example, genome editing in the human K562 bone marrow erythroleukemia cell line, which serve as a proxy for HSCs and which can be predictive of genome editing in HSCs, were electroporated with Cas9 mRNA and gRNA HBB-8 and gRNA HBB-15 to induce gene editing at the human HBB locus.
K562 cells were grown in RPMI media (Life Technologies) containing 10% fetal bovine serum (FBS). For the RNA electroporation, the Maxcyte GT device (http://www.maxcyte.com/) was used. S. pyogenes Cas9 mRNA and gRNA HBB-15 and gRNA HBB-8 were prepared by in vitro transcription using linearized plasmid DNA as templates and the Ambion mMessage mMachine® T7 Ultra Transcription kit (Life Technologies) according to the manufacturer's instructions. In this embodiment, both the Cas9 and gRNA were in vitro transcribed using a T7 polymerase. For example, a 5' ARCA cap was added to both RNA species simultaneous to transcription while a polyA tail was added after transcription to the 3' end of the RNA species by an E. coli polyA polymerase. Capped and tailed gRNA HBB-8 and gRNA HBB-15 were complexed at room temperature with S. pyogenes H-NLS-Cas9 protein at a molar ratio of -25: 1 (gRNA : Cas9 protein) in a total of 30 μg RNP. Briefly, three million K562 cells were suspended in 100 μΐ^ Maxcyte EP buffer and transferred to the RNP solution (13μί). In addition, K562 cells were electroporated with S. pyogenes Cas9 mRNA and each of the gRNA HBB-8 and gRNA HBB- 15. For the mRNA/gRNA electroporation with the Maxcyte device, 10 μg of gRNA HBB-8 (or 10 μg of HBB gRNA HBB-15) were mixed with 10 μg of Cas9 mRNA. Four million K562 cells were suspended in 100 μΐ^ Maxcyte EP buffer and then transferred to the mRNA/gRNA solution (13 μί). K562 cells mixed with either RNP or RNA were
electroporated with the Maxcyte GT device. At 48 hours after electroporation, K562 cells were enumerated by trypan blue exclusion and were determined to have >88% viability in the electroporated cell populations. Genomic DNA was extracted from K562 cells 48 hours after electroporation and HBB locus-specific PCR reactions were performed.
In order to detect indels at the HBB Zocus, T7E1 assays were performed on HBB locus- specific PCR products that were amplified from genomic DNA samples from electroporated K562 cells and the percentage of indels detected at the HBB locus was calculated (Fig. 21).
Co-delivery of 10 μg RNP which contains wild-type S. pyogenes Cas9 protein with HBB gRNA 8 or HBB gRNA 15 resulted in 26.8% and 16.1% indels, respectively, at the HBB locus in gDNA from K562 cells (molar ratio protein: gRNA 24: 1). Co-delivery of Cas9 mRNA with gRNA HBB-8 or HBB-15 led to 66.9% and 29.5% indels at the HBB locus in gDNA from K562 cells (10 μg of each RNA/4 million cells). This example shows that delivery of Cas9
mRNA/gRNA and Cas9 RNPs leads to editing of the HBB locus in a relevant bone marrow derived hematopoietic cell line (K562 cells). Clinically, transplantation of autologous HSCs in which the HBB locus has been edited to correct the genetic mutation that causes red blood cell sickling could be used to ameliorate symptoms of SCD.
Incorporation by Reference
All publications, patents, and patent applications mentioned herein are hereby incorporated by reference in their entirety as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
Equivalents
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

Claims

Other embodiments are within the following claims. What is claimed is:
1. A gRNA molecule comprising a targeting domain which is complementary with a target domain from the HBB or BCLllA gene.
2. The gRNA molecule of claim 1, wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of an SCD target point position or an SCD target knockout position.
3. The gRNA molecule of claim 1 or 2, wherein said targeting domain is configured to
target an early coding region or an enhancer region of the BCLllA gene.
4. The gRNA molecule of claim 1 or 2, wherein said targeting domain is configured to target a mutation in the HBB gene.
5. The gRNA molecule of claim 1, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to an SCD target knockdown position to reduce, decrease or repress expression of the BCLllA gene.
6. The gRNA molecule of claim 1, 2, or 5, wherein said targeting domain is configured to target the promoter region of the BCLllA gene.
7. The gRNA molecule of any of claims 1-6, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
8. The gRNA molecule of any of claims 1-6, wherein said targeting domain comprises or consists of a sequence that is the same as a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
9. The gRNA molecule of any of claims 1-3 or 6-8, wherein said targeting domain is selected from those in Tables 2A-2F, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 15A- 15D, 16A-16E, 17A-17B, 21A-21E, 22A-22E, or 23A-23C.
10. The gRNA molecule of any of claims 1 or 5-8, wherein said targeting domain is selected from those in Tables 3A-3C, 10A-10D, 11A-11D, 12, 18A-18C, 19A-19E, or 20A-20C.
11. The gRNA molecule of any of claims 1, 2, 4, 7, or 8, wherein said targeting domain is selected from those in Tables 1A-1D, 13A-13D, 14A-14C, 24A-24D, 25A-25B, and 26.
12. The gRNA molecule of any of claims 1-11, wherein said gRNA is a modular gRNA molecule.
13. The gRNA molecule of any of claimsl-11, wherein said gRNA is a chimeric gRNA molecule.
14. The gRNA molecule of any of claims 1-13, wherein said targeting domain is 16
nucleotides or more in length.
15. The gRNA molecule of any of claims 1-14, wherein said targeting domain is 17
nucleotides or more in length.
16. The gRNA molecule of any of claims 1-15, wherein said targeting domain is 18
nucleotides or more in length.
17. The gRNA molecule of any of claims 1-16, wherein said targeting domain is 19
nucleotides or more in length.
18. The gRNA molecule of any of claims 1-17, wherein said targeting domain is 20
nucleotides or more in length.
19. The gRNA molecule of any of claims 1-18, wherein said targeting domain is 21
nucleotides or more in length.
20. The gRNA molecule of any of claims 1-19, wherein said targeting domain is 22
nucleotides or more in length.
21. The gRNA molecule of any of claims 1-20, wherein said targeting domain is 23
nucleotides or more in length.
22. The gRNA molecule of any of claims 1-21, wherein said targeting domain is 24
nucleotides or more in length.
23. The gRNA molecule of any of claims 1-22, wherein said targeting domain is 25
nucleotides or more in length.
24. The gRNA molecule of any of claims 1-23, wherein said targeting domain is 26 nucleotides or more in length.
25. The gRNA molecule of any of claims 1-24, comprising from 5' to 3':
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
26. The gRNA molecule of any of claims 1-25, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and
a targeting domain of 17 or 18 nucleotides in length.
27. The gRNA molecule of any of claims 1-26, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and
a targeting domain of 17 or 18 nucleotides in length.
28. The gRNA molecule of any of claims 1-27, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and
a targeting domain of 17 nucleotides in length.
29. The gRNA molecule of any of claims 1-28, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and
a targeting domain of 17 nucleotides in length.
30. A nucleic acid that comprises: (a) sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with an SCD target domain in the HBB gene or BCL11A gene.
31. The nucleic acid of claim 30, wherein said gRNA molecule is a gRNA molecule of any of claims 1-29.
32. The nucleic acid of claim 30 or 31, wherein said targeting domain is configured to
provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the SCD target point position or the SCD target knockout position.
33. The nucleic acid of any of claims 30-32, wherein said targeting domain is configured to target an early coding region or an enhancer region of the BCL11A gene.
34. The nucleic acid of any of claims 30-32, wherein said targeting domain is configured to target a mutation in the HBB gene.
35. The nucleic acid of claim 30 or 31, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to an SCD target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
36. The nucleic acid of claim 30, 31, or 35, wherein said targeting domain is configured to target the promoter region of the BCL11A gene.
37. The nucleic acid of any of claims 30-36, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
38. The nucleic acid of any of claims 30-36, wherein said targeting domain comprises or consists of a sequence that is the same as a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
39. The nucleic acid of any of claims 30-38, wherein said gRNA is a modular gRNA molecule.
40. The nucleic acid of any of claims 30-38, wherein said gRNA is a chimeric gRNA
molecule.
41. The nucleic acid of any of claims 30-40, wherein said targeting domain is 16 nucleotides or more in length.
42. The nucleic acid of any of claims 30-41, wherein said targeting domain is 17 nucleotides in length.
43. The nucleic acid of any of claims 30-42, wherein said targeting domain is 18 nucleotides in length.
44. The nucleic acid of any of claims 30-43, wherein said targeting domain is 19 nucleotides in length.
45. The nucleic acid of any of claims 30-44, wherein said targeting domain is 20 nucleotides in length.
46. The nucleic acid of any of claims 30-45, wherein said targeting domain is 21 nucleotides in length.
47. The nucleic acid of any of claims 30-46, wherein said targeting domain is 22 nucleotides in length.
48. The nucleic acid of any of claims 30-47, wherein said targeting domain is 23 nucleotides in length.
49. The nucleic acid of any of claims 30-48, wherein said targeting domain is 24 nucleotides in length.
50. The nucleic acid of any of claims 30-49, wherein said targeting domain is 25 nucleotides in length.
51. The nucleic acid of any of claims 30-50, wherein said targeting domain is 26 nucleotides in length.
52. The nucleic acid of any of claims 30-51, comprising from 5' to 3' :
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain; a proximal domain; and
a tail domain.
53. The nucleic acid of any of claims 30-52, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
54. The nucleic acid of any of claims 30-53, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
55. The nucleic acid of any of claims 30-54, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain of 17 nucleotides in length.
56. The nucleic acid of any of claims 30-55, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain of 17 nucleotides in length.
57. The nucleic acid of any of claims 30-56, further comprising: (b) sequence that encodes a Cas9 molecule.
58. The nucleic acid of claim 57, wherein said Cas9 molecule is an eaCas9 molecule.
59. The nucleic acid of claim 58, wherein said eaCas9 molecule comprises a nickase
molecule.
60. The nucleic acid of claim 58, wherein said eaCas9 molecule forms a double strand break in a target nucleic acid.
61. The nucleic acid of any of claims 58-59, wherein said eaCas9 molecule forms a single strand break in a target nucleic acid.
62. The nucleic acid of any of claims 58-59 or 61, wherein said single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA molecule is complementary.
63. The nucleic acid of any of claims 58-59 or 61, wherein said single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the targeting domain of said gRNA is complementary.
64. The nucleic acid of any of claims 58-59 or 61, wherein said eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
65. The nucleic acid of any of claims 58-59, 61, or 64, wherein said eaCas9 molecule is an HNH-like domain nickase.
66. The nucleic acid of any of claims 58-59, 61, 64, or 65, wherein said eaCas9 molecule comprises a mutation at D10.
67. The nucleic acid of any of claims 58-59 or 61, wherein said eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
68. The nucleic acid of any of claims 58-59, 61, or 67, wherein said eaCas9 molecule is an N-terminal RuvC-like domain nickase.
69. The nucleic acid of any of claims 58-59, 61, 67, or 68, wherein said eaCas9 molecule comprises a mutation at H840 or N863.
70. The nucleic acid of claim 57, wherein said Cas9 molecule is an eiCas9 molecule.
71. The nucleic acid of claim 70, wherein said Cas9 molecule is an eiCas9-fusion protein molecule.
72. The nucleic acid of claim 70 or 71, wherein the eiCas9 fusion protein molecule is an eiCas9-transcription repressor domain fusion or eiCas9-chromatin modifying protein fusion.
73. The nucleic acid of any of claims 30-71, further comprising: (c) sequence that encodes a second gRNA molecule described herein having a targeting domain that is
complementary to a second target domain of the HBB gene or BCL11A gene.
74. The nucleic acid of claim 73, wherein said second gRNA molecule is a gRNA molecule of any of claims 1-29.
75. The nucleic acid of claim 73 or 74, wherein said targeting domain of said second gRNA molecule is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the SCD target point position or the SCD target knockout position.
76. The nucleic acid of any of claims 73-75, wherein said targeting domain of said second gRNA molecule is configured to target an early coding region or an enhancer regin of the BCL11A gene.
77. The nucleic acid of any of claims 73-75, wherein said targeting domain of said second gRNA molecule is configured to target a mutation in the HBB gene.
78. The nucleic acid of claim 73 or 74, wherein said targeting domain of said second gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to an SCD target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
79. The nucleic acid of claim 73, 74, or 78, wherein said targeting domain of said second gRNA molecule is configured to target the promoter region of the BCL11A gene.
80. The nucleic acid of any of claims 73-79, wherein said targeting domain of said second gRNA molecule comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A- 13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
81. The nucleic acid of any of claims 73-79, wherein said targeting domain of said second gRNA molecule comprises or consists of a sequence that is the same as a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A- 7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A- 17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
82. The nucleic acid of any of claims 73-81, wherein said second gRNA molecule is a
modular gRNA molecule.
83. The nucleic acid of any of claims 73-81, wherein said second gRNA molecule is a
chimeric gRNA molecule.
84. The nucleic acid of any of claims 73-83, wherein said targeting domain of the second gRNA molecule is 16 nucleotides or more in length.
85. The nucleic acid of any of claims 73-84, wherein said targeting domain of the second gRNA molecule is 17 nucleotides in length.
86. The nucleic acid of any of claims 73-85, wherein said targeting domain of the second gRNA molecule is 18 nucleotides in length.
87. The nucleic acid of any of claims 73-86, wherein said targeting domain of the second gRNA molecule is 19 nucleotides in length.
88. The nucleic acid of any of claims 73-87, wherein said targeting domain of the second gRNA molecule is 20 nucleotides in length.
89. The nucleic acid of any of claims 73-88, wherein said targeting domain of the second gRNA molecule is 21 nucleotides in length.
90. The nucleic acid of any of claims 73-89, wherein said targeting domain of the second gRNA molecule is 22 nucleotides in length.
91. The nucleic acid of any of claims 73-90, wherein said targeting domain of the second gRNA molecule is 23 nucleotides in length.
92. The nucleic acid of any of claims 73-91, wherein said targeting domain of the second gRNA molecule is 24 nucleotides in length.
93. The nucleic acid of any of claims 73-92, wherein said targeting domain of the second gRNA molecule is 25 nucleotides in length.
94. The nucleic acid of any of claims 73-93, wherein said targeting domain of the second gRNA molecule is 26 nucleotides in length.
95. The nucleic acid of any of claims 73-94, wherein said second gRNA molecule comprises from 5' to 3':
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
96. The nucleic acid of any of claims 73-95, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
97. The nucleic acid of any of claims 73-96, wherein said second molecule gRNA molecule comprises:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
98. The nucleic acid of any of claims 73-97, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain of 17 nucleotides in length.
99. The nucleic acid of any of claims 73-98, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain of 17 nucleotides in length.
100. The nucleic acid of any of claims 73-99, further comprising a third gRNA
molecule.
101. The nucleic acid of claim 100, further comprising a fourth gRNA molecule.
102. The nucleic acid of any of claims 30-72, wherein said nucleic acid does not
comprise (c) a sequence that encodes a second gRNA molecule.
103. The nucleic acid 102, wherein each of (a) and (b) is present on the same nucleic acid molecule.
104. The nucleic acid of claim 103, wherein said nucleic acid molecule is an AAV vector.
105. The nucleic acid of any of claims 57-102, wherein: (a) is present on a first nucleic acid molecule; and (b) is present on a second nucleic acid molecule.
106. The nucleic acid of claim 105, wherein said first and second nucleic acid
molecules are AAV vectors.
107. The nucleic acid of any of claims 73-101 or 103-106, wherein each of (a) and (c) is present on the same nucleic acid molecule.
108. The nucleic acid of claim 107, wherein said nucleic acid molecule is an AAV vector.
109. The nucleic acid of any of claims 73-101 or 103-106, wherein: (a) is present on a first nucleic acid molecule; and (c) is present on a second nucleic acid molecule.
110. The nucleic acid of claim 109, wherein said first and second nucleic acid
molecules are AAV vectors.
111. The nucleic acid of any of claims 72-101, 103, 104, 107, or 108, wherein each of (a), (b), and (c) are present on the same nucleic acid molecule.
112. The nucleic acid of claim 111, wherein said nucleic acid molecule is an AAV vector.
113. The nucleic acid of any of claims 73-101 or 103-110, wherein:
one of (a), (b), and (c) is encoded on a first nucleic acid molecule; and
and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule.
114. The nucleic acid of claim 113, wherein said first and second nucleic acid
molecules are AAV vectors.
115. The nucleic acid of any of claims 73-101, 105, 106, 109, 110, 113, or 114,
wherein: (a) is present on a first nucleic acid molecule; and (b) and (c) are present on a second nucleic acid molecule.
116. The nucleic acid of claim 115, wherein said first and second nucleic acid
molecules are AAV vectors.
117. The nucleic acid of any of claims 73-101, 105-108, 113, or 114, wherein: (b) is present on a first nucleic acid molecule; and (a) and (c) are present on a second nucleic acid molecule.
118. The nucleic acid of claim 117, wherein said first and second nucleic acid
molecules are AAV vectors.
119. The nucleic acid of any of claims 73-101, 103, 104, 109, 110, 113, or 114,
wherein: (c) is present on a first nucleic acid molecule; and (b) and (a) are present on a second nucleic acid molecule.
120. The nucleic acid of claim 119, wherein said first and second nucleic acid
molecules are AAV vectors.
121. The nucleic acid of any of claims 105, 109, 113, 115, 117, or 119, wherein said first nucleic acid molecule is other than an AAV vector and said second nucleic acid molecule is an AAV vector.
122. The nucleic acid of any of claims 30-121, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes said gRNA molecule of (a).
123. The nucleic acid of any of claims 73-101 or 103-122, wherein said nucleic acid comprises a second promoter operably linked to the sequence that encodes the second gRNA molecule of (c).
124. The nucleic acid of claim 123, wherein the promoter and second promoter differ from one another.
125. The nucleic acid of claim 123, wherein the promoter and second promoter are the same.
126. The nucleic acid of any of claims 73-125, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes the Cas9 molecule of (b).
127. A composition comprising the (a) gRNA molecule of any of claims 1-29.
128. The composition of claim 127, further comprising (b) a Cas9 molecule of any of claims 57-72.
129. The composition of any of claims 127-128, further comprising (c) a second gRNA molecule of any of claims 73-99.
130. The composition of claim 129, further comprising a third gRNA molecule.
131. The composition of claim 130, further comprising a fourth gRNA molecule.
132. A method of altering a cell comprising contacting said cell with:
(a) a gRNA of any of claims 1-29;
(b) a Cas9 molecule of any of claims 57-72;
optionally, (c) a second gRNA molecule of any of claims 73-99; and
optionally, (d) a template nucleic acid.
133. The method of claim 132, wherein the gRNA targets the HBB gene and no
exogenous template nucleic acid is contacted with the cell.
134. The method of claim 132 or 133, further comprising contacting said cell with a third gRNA molecule.
135. The method of claim 134, further comprising contacting said cell with a fourth gRNA molecule.
136. The method of claim 132 or 133, comprising contacting said cell with (a), (b), (c), and optionally (d).
137. The method of any of claims 132-136, wherein said gRNA molecule of (a) is selected from any of claims 1-29.
138. The method of any of claims 132-137, wherein said cell is from a subject
suffering from SCD.
139. The method of any of claims 132-138, wherein said cell is from a subject having a mutation at an SCD target position in the HBB gene or from a subject which would benefit from having a mutation at an SCD target position in the BCLllA gene.
140. The method of any of claims 132- 139, wherein said cell is an erythroid cell.
141. The method of any of claims 132- 139, wherein said cell is a bone marrow cell.
142. The method of any of claims 132- 139, wherein said cell is a stem cell.
143. The method of any of claims 132- 142, wherein said contacting step is performed ex vivo.
144. The method of any of claims 132- 143, wherein said contacted cell is returned to said subject's body.
145. The method of any of claims 132- 142, wherein said contacting is performed in vivo.
146. The method of any of claims 132- 145, wherein said cell is from a subject that has
SCD.
147. The method of any of claims 132- 146, comprising acquiring knowledge of the sequence of the SCD target position in said cell.
148. The method of claim 147, comprising acquiring knowledge of the sequence of the SCD target position in said cell by sequencing a portion of the HBB gene or BCLllA gene.
149. The method of any of claims 132-148, comprising correcting a mutation or
introducing a mutation at the SCD target position.
150. The method of any of claims 132-149, wherein the contacting step comprises contacting said cell with a nucleic acid that encodes at least one of (a), (b), (c) and (d).
151. The method of any of claims 132-150, wherein the contacting step comprises contacting the cell with a nucleic acid of any of claims 30-126.
152. The method of any of claims 132-151, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b) and a nucleic acid which encodes and (a) and optionally (c) and/or (d).
153. The method of any of claims 132-151, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b), said gRNA molecule of (a) and optionally said second gRNA molecule of (c).
154. The method of any of claims 132-151, wherein the contacting step comprises delivering to said cell said gRNA molecule of (a), optionally said second gRNA molecule of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
155. A method of treating a subject, comprising contacting a subject or a cell from said subject with:
(a) a gRNA of any of claims 1-29;
(b) a Cas9 molecule of any of claims 57-72;
optionally, (c) a second gRNA of any of claims 73-99; and
optionally, (d) a template nucleic acid.
156. The method of claim 155, wherein the gRNA targets the HBB gene and no
exogenous template nucleic acid is contacted with the subject or a cell from the subject.
157. The method of claim 155, further comprising contacting the subject or a cell from the subject with a third gRNA molecule.
158. The method of claim 157, further comprising contacting the subject or a cell from the subject with a fourth gRNA molecule.
159. The method of any one of claims 155-158, further comprising contacting said subject or a cell from said subject with (a), (b), (c), and optionally (d).
160. The method of claims any one of claims 155-159, wherein said subject is
suffering from SCD.
161. The method of any of claims 155-160, wherein said subject has a mutation at the SCD target position in the HBB gene or would benefit from having a mutation at the SCD target position in the BCL11A gene.
162. The method of any of claims 155-161, comprising acquiring knowledge of the sequence of the SCD target position in said subject.
163. The method of claim 162, comprising acquiring knowledge of the sequence of the SCD target position in said subject by sequencing a portion of the HBB gene or BCLllA gene.
164. The method of claim 155-163, comprising correcting a mutation at the SCD target position in the HBB gene or introducing a mutation at the SCD target position in the BCLllA gene.
165. The method of any of claims 155-164, wherein a cell of said subject is contacted ex vivo with (a), (b), and optionally (c) and/or (d).
166. The method of claim 165, wherein said cell is returned to the subject's body.
167. The method of any of claims 155-164, comprising introducing a cell into said subject's body, wherein said cell is contacted ex vivo with (a), (b), and optionally (c) and/or (d).
168. The method of any of claims 155-164, wherein said contacting step is performed in vivo.
169. The method of any of claims 155-164 or 168, wherein said contacting step
comprises intravenous delivery.
170. The method of any of claims 155-164 or 168, wherein said contacting step
comprises intramuscular injection.
171. The method of any of claims 155-164 or 168, wherein said contacting step
comprises subcutaneous delivery.
172. The method of any of claims 155-164 or 168, wherein said contacting step
comprises intra-bone marrow (IBM) injection.
173. The method of any of claims 155-164 or 168-172, comprising contacting said subject or a cell from said subject with a nucleic acid that encodes at least one of (a), (b), and (c).
174. The method of any of claims 155-164 or 168-173, comprising contacting said subject or a cell from said subject with a nucleic acid of any of any of claims 30-126.
175. The method of any of claims 155-174, wherein the contacting step comprises delivering to said subject or a cell from said subject said Cas9 molecule of (b) and a nucleic acid which encodes and (a) and optionally (c), and optionally (d).
176. The method of any of claims 155-175, wherein the contacting step comprises delivering to said subject or a cell from said subject said Cas9 molecule of (b), said gRNA of (a) and optionally said second gRNA of (c), and optionally said template nucleic acid of (d).
177. The method of any of claims 155-176, wherein the contacting step comprises delivering to said subject or a cell from said subject said gRNA of (a), optionally said second gRNA of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
178. A reaction mixture comprising a gRNA, a nucleic acid, or a composition
described herein, and a cell from a subject having SCD, a subject having a mutation at an SCD target position of the HBB gene, or a subject which would benefit from having a mutation at an SCD target position of the BCL11A gene.
179. A kit comprising, (a) gRNA molecule of any of claims 1-29, or nucleic acid that encodes said gRNA, and one or more of the following:
(b) a Cas9 molecule of any of claims 57-72;
(c) a second gRNA molecule of any of claims 73-99;
(d) a template nucleic acid; and
(e) nucleic acid that encodes one or more of (b) and (c).
180. The kit of claim 179, comprising a nucleic acid that encodes one or more of (a), (b) (c) and (d).
181. The kit of claim 179 or 180, further comprising a third gRNA molecule targeting a SCD target point position or a SCD target knockout position.
182. The kit of claim 181, further comprising a fourth gRNA molecule targeting a SCD target point position or a SCD target knockout position.
183. A gRNA molecule of any of claims 1-29 for use in treating SCD in a subject.
184. The gRNA molecule of claim 183, wherein the gRNA molecule is used in
combination with (b) a Cas9 molecule of any of claims 57-72.
185. The gRNA molecule of claim 183 or 184, wherein the gRNA molecule is used in combination with (c) a second gRNA molecule of any of claims 73-99.
186. Use of a gRNA molecule of any of claims 1-29 in the manufacture of a
medicament for treating SCD in a subject.
187. The use of claim 186, wherein the medicament further comprises (b) a Cas9 molecule of any of claim 57-72.
188. The use of claim 186 or 187, wherein the medicament further comprises (c) a second gRNA molecule of any of claim 73-99.
189. A composition of any of claims 127-131 for use in treating SCD in a subject.
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Cited By (66)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9340799B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College MRNA-sensing switchable gRNAs
WO2016094874A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Escorted and functionalized guides for crispr-cas systems
WO2016094880A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Delivery, use and therapeutic applications of crispr systems and compositions for genome editing as to hematopoietic stem cells (hscs)
WO2016094867A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Protected guide rnas (pgrnas)
WO2016094872A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Dead guides for crispr transcription factors
WO2016106244A1 (en) 2014-12-24 2016-06-30 The Broad Institute Inc. Crispr having or associated with destabilization domains
US9388430B2 (en) 2013-09-06 2016-07-12 President And Fellows Of Harvard College Cas9-recombinase fusion proteins and uses thereof
US9526784B2 (en) 2013-09-06 2016-12-27 President And Fellows Of Harvard College Delivery system for functional nucleases
WO2016154579A3 (en) * 2015-03-26 2017-01-26 Editas Medicine, Inc. Crispr/cas-mediated gene conversion
WO2017062855A1 (en) * 2015-10-09 2017-04-13 Monsanto Technology Llc Novel rna-guided nucleases and uses thereof
EP3219799A1 (en) 2016-03-17 2017-09-20 IMBA-Institut für Molekulare Biotechnologie GmbH Conditional crispr sgrna expression
WO2017160890A1 (en) * 2016-03-14 2017-09-21 Editas Medicine, Inc. Crispr/cas-related methods and compositions for treating beta hemoglobinopathies
US9834791B2 (en) 2013-11-07 2017-12-05 Editas Medicine, Inc. CRISPR-related methods and compositions with governing gRNAS
US9840699B2 (en) 2013-12-12 2017-12-12 President And Fellows Of Harvard College Methods for nucleic acid editing
US9856497B2 (en) 2016-01-11 2018-01-02 The Board Of Trustee Of The Leland Stanford Junior University Chimeric proteins and methods of regulating gene expression
CN107630018A (en) * 2017-09-30 2018-01-26 深圳三智医学科技有限公司 A kind of kit for being used to editing or repairing HBB gene
WO2017216771A3 (en) * 2016-06-17 2018-02-01 Genesis Technologies Limited Crispr-cas system, materials and methods
US10077453B2 (en) 2014-07-30 2018-09-18 President And Fellows Of Harvard College CAS9 proteins including ligand-dependent inteins
US10113163B2 (en) 2016-08-03 2018-10-30 President And Fellows Of Harvard College Adenosine nucleobase editors and uses thereof
US10167457B2 (en) 2015-10-23 2019-01-01 President And Fellows Of Harvard College Nucleobase editors and uses thereof
JP2019500043A (en) * 2015-12-28 2019-01-10 ノバルティス アーゲー Compositions and methods for the treatment of abnormal hemoglobinosis
US10227581B2 (en) 2013-08-22 2019-03-12 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US20190134118A1 (en) * 2017-10-18 2019-05-09 City Of Hope Adeno-associated virus compositions for restoring hbb gene function and methods of use thereof
WO2019094518A1 (en) 2017-11-07 2019-05-16 Editas Medicine, Inc. Targeted integration systems and methods for the treatment of hemoglobinopathies
US10323236B2 (en) 2011-07-22 2019-06-18 President And Fellows Of Harvard College Evaluation and improvement of nuclease cleavage specificity
US10336807B2 (en) 2016-01-11 2019-07-02 The Board Of Trustees Of The Leland Stanford Junior University Chimeric proteins and methods of immunotherapy
WO2019178427A1 (en) 2018-03-14 2019-09-19 Arbor Biotechnologies, Inc. Novel crispr dna targeting enzymes and systems
US10508298B2 (en) 2013-08-09 2019-12-17 President And Fellows Of Harvard College Methods for identifying a target site of a CAS9 nuclease
WO2020131862A1 (en) 2018-12-17 2020-06-25 The Broad Institute, Inc. Crispr-associated transposase systems and methods of use thereof
US10738305B2 (en) 2015-02-23 2020-08-11 Vertex Pharmaceuticals Incorporated Materials and methods for treatment of hemoglobinopathies
US10745677B2 (en) 2016-12-23 2020-08-18 President And Fellows Of Harvard College Editing of CCR5 receptor gene to protect against HIV infection
CN111902536A (en) * 2018-02-15 2020-11-06 西格马-奥尔德里奇有限责任公司 Engineered CAS9 system for eukaryotic genome modification
WO2020257325A1 (en) * 2019-06-17 2020-12-24 Vertex Pharmaceuticals Inc. Compositions and methods for editing beta-globin for treatment of hemaglobinopathies
EP3763814A1 (en) * 2015-05-08 2021-01-13 The Children's Medical Center Corporation Targeting bcl11a enhancer functional regions for fetal hemoglobin reinduction
WO2021067788A1 (en) 2019-10-03 2021-04-08 Artisan Development Labs, Inc. Crispr systems with engineered dual guide nucleic acids
US20210189435A1 (en) * 2017-06-05 2021-06-24 Guangzhou Ribobio Co., Ltd. System for DNA editing and uses thereof
US11124794B2 (en) 2014-04-25 2021-09-21 The Children's Medical Center Corporation Compositions and methods to treating hemoglobinopathies
US11180751B2 (en) 2015-06-18 2021-11-23 The Broad Institute, Inc. CRISPR enzymes and systems
US11242525B2 (en) 2014-03-26 2022-02-08 Editas Medicine, Inc. CRISPR/CAS-related methods and compositions for treating sickle cell disease
US11268082B2 (en) 2017-03-23 2022-03-08 President And Fellows Of Harvard College Nucleobase editors comprising nucleic acid programmable DNA binding proteins
US11268077B2 (en) 2018-02-05 2022-03-08 Vertex Pharmaceuticals Incorporated Materials and methods for treatment of hemoglobinopathies
US11306324B2 (en) 2016-10-14 2022-04-19 President And Fellows Of Harvard College AAV delivery of nucleobase editors
US11319532B2 (en) 2017-08-30 2022-05-03 President And Fellows Of Harvard College High efficiency base editors comprising Gam
US11352647B2 (en) 2016-08-17 2022-06-07 The Broad Institute, Inc. Crispr enzymes and systems
US11390884B2 (en) 2015-05-11 2022-07-19 Editas Medicine, Inc. Optimized CRISPR/cas9 systems and methods for gene editing in stem cells
US11447770B1 (en) 2019-03-19 2022-09-20 The Broad Institute, Inc. Methods and compositions for prime editing nucleotide sequences
US11466271B2 (en) 2017-02-06 2022-10-11 Novartis Ag Compositions and methods for the treatment of hemoglobinopathies
US11497816B2 (en) * 2015-10-06 2022-11-15 The Children's Hospital Of Philadelphia Compositions and methods for treating fragile X syndrome and related syndromes
WO2022256448A2 (en) 2021-06-01 2022-12-08 Artisan Development Labs, Inc. Compositions and methods for targeting, editing, or modifying genes
WO2022266538A2 (en) 2021-06-18 2022-12-22 Artisan Development Labs, Inc. Compositions and methods for targeting, editing or modifying human genes
US11542496B2 (en) 2017-03-10 2023-01-03 President And Fellows Of Harvard College Cytosine to guanine base editor
US11542509B2 (en) 2016-08-24 2023-01-03 President And Fellows Of Harvard College Incorporation of unnatural amino acids into proteins using base editing
EP3371306B1 (en) * 2015-11-04 2023-01-04 Crispr Therapeutics AG Materials and methods for treatment of hemoglobinopathies
US11560566B2 (en) 2017-05-12 2023-01-24 President And Fellows Of Harvard College Aptazyme-embedded guide RNAs for use with CRISPR-Cas9 in genome editing and transcriptional activation
US20230111575A1 (en) * 2016-12-30 2023-04-13 Editas Medicine, Inc. Synthetic guide molecules, compositions and methods relating thereto
US11661590B2 (en) 2016-08-09 2023-05-30 President And Fellows Of Harvard College Programmable CAS9-recombinase fusion proteins and uses thereof
US11732274B2 (en) 2017-07-28 2023-08-22 President And Fellows Of Harvard College Methods and compositions for evolving base editors using phage-assisted continuous evolution (PACE)
WO2023167882A1 (en) 2022-03-01 2023-09-07 Artisan Development Labs, Inc. Composition and methods for transgene insertion
US11788087B2 (en) 2017-05-25 2023-10-17 The Children's Medical Center Corporation BCL11A guide delivery
US11795443B2 (en) 2017-10-16 2023-10-24 The Broad Institute, Inc. Uses of adenosine base editors
US11851690B2 (en) 2017-03-14 2023-12-26 Editas Medicine, Inc. Systems and methods for the treatment of hemoglobinopathies
US11866726B2 (en) 2017-07-14 2024-01-09 Editas Medicine, Inc. Systems and methods for targeted integration and genome editing and detection thereof using integrated priming sites
US11898179B2 (en) 2017-03-09 2024-02-13 President And Fellows Of Harvard College Suppression of pain by gene editing
US11912985B2 (en) 2020-05-08 2024-02-27 The Broad Institute, Inc. Methods and compositions for simultaneous editing of both strands of a target double-stranded nucleotide sequence
US11911415B2 (en) 2015-06-09 2024-02-27 Editas Medicine, Inc. CRISPR/Cas-related methods and compositions for improving transplantation
US11963982B2 (en) 2017-05-10 2024-04-23 Editas Medicine, Inc. CRISPR/RNA-guided nuclease systems and methods

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3280803B1 (en) 2015-04-06 2021-05-26 The Board of Trustees of the Leland Stanford Junior University Chemically modified guide rnas for crispr/cas-mediated gene regulation
IL283877B (en) 2015-05-06 2022-07-01 Snipr Tech Ltd Altering microbial populations & modifying microbiota
CA3106812A1 (en) * 2018-04-27 2019-10-31 Seattle Children's Hospital (dba Seattle Children's Research Institute) Homology-directed repair template design and delivery to edit hemoglobin-related mutations
CN112654710A (en) * 2018-05-16 2021-04-13 辛瑟高公司 Methods and systems for directing RNA design and use
CN113166754A (en) 2018-10-16 2021-07-23 蓝色等位基因有限责任公司 Method for targeted insertion of DNA into genes
AU2020221274B2 (en) 2019-02-15 2024-02-08 Sigma-Aldrich Co. Llc. Crispr/Cas fusion proteins and systems

Family Cites Families (106)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7150982B2 (en) 1991-09-09 2006-12-19 Third Wave Technologies, Inc. RNA detection assays
US6203986B1 (en) 1998-10-22 2001-03-20 Robert H. Singer Visualization of RNA in living cells
PT1221917E (en) 1999-10-21 2005-04-29 Alcon Inc DEVICE FOR MINISTRY OF MEDICINES
US7563255B2 (en) 2001-05-03 2009-07-21 Massachusetts Eye And Ear Infirmary Implantable drug delivery device and use thereof
WO2003072788A1 (en) 2002-02-21 2003-09-04 The Wistar Institute Of Anatomy And Biology Methods and compositions for reversibly controlling expression of target genes in cells
AU2003274404A1 (en) 2002-06-11 2003-12-22 The Scripps Research Institute Artificial transcription factors
WO2007014181A2 (en) 2005-07-25 2007-02-01 Johns Hopkins University Site-specific modification of the human genome using custom-designed zinc finger nucleases
US9677123B2 (en) 2006-03-15 2017-06-13 Siemens Healthcare Diagnostics Inc. Degenerate nucleobase analogs
NZ579002A (en) 2007-03-02 2012-03-30 Danisco Cultures with improved phage resistance
US8546553B2 (en) 2008-07-25 2013-10-01 University Of Georgia Research Foundation, Inc. Prokaryotic RNAi-like system and methods of use
US20100076057A1 (en) 2008-09-23 2010-03-25 Northwestern University TARGET DNA INTERFERENCE WITH crRNA
WO2010037001A2 (en) 2008-09-26 2010-04-01 Immune Disease Institute, Inc. Selective oxidation of 5-methylcytosine by tet-family proteins
US9404098B2 (en) 2008-11-06 2016-08-02 University Of Georgia Research Foundation, Inc. Method for cleaving a target RNA using a Cas6 polypeptide
US8889394B2 (en) 2009-09-07 2014-11-18 Empire Technology Development Llc Multiple domain proteins
US10087431B2 (en) 2010-03-10 2018-10-02 The Regents Of The University Of California Methods of generating nucleic acid fragments
CA2798703A1 (en) 2010-05-10 2011-11-17 The Regents Of The University Of California Endoribonuclease compositions and methods of use thereof
CA2798988C (en) 2010-05-17 2020-03-10 Sangamo Biosciences, Inc. Tal-effector (tale) dna-binding polypeptides and uses thereof
GB201013153D0 (en) 2010-08-04 2010-09-22 Touchlight Genetics Ltd Primer for production of closed linear DNA
US9499592B2 (en) 2011-01-26 2016-11-22 President And Fellows Of Harvard College Transcription activator-like effectors
RS60207B1 (en) 2011-04-22 2020-06-30 Univ California Adeno-associated virus virions with variant capsid and methods of use thereof
US20140113376A1 (en) 2011-06-01 2014-04-24 Rotem Sorek Compositions and methods for downregulating prokaryotic genes
AU2012284365B2 (en) 2011-07-15 2017-04-20 The General Hospital Corporation Methods of transcription activator like effector assembly
CA2853829C (en) 2011-07-22 2023-09-26 President And Fellows Of Harvard College Evaluation and improvement of nuclease cleavage specificity
US8450107B1 (en) 2011-11-30 2013-05-28 The Broad Institute Inc. Nucleotide-specific recognition sequences for designer TAL effectors
GB201122458D0 (en) 2011-12-30 2012-02-08 Univ Wageningen Modified cascade ribonucleoproteins and uses thereof
BR112014020625A2 (en) * 2012-02-24 2017-07-04 Hutchinson Fred Cancer Res polynucleotide, polypeptide, composition, cell, and stem cell edited by genome
WO2013130824A1 (en) 2012-02-29 2013-09-06 Sangamo Biosciences, Inc. Methods and compositions for treating huntington's disease
US9637739B2 (en) 2012-03-20 2017-05-02 Vilnius University RNA-directed DNA cleavage by the Cas9-crRNA complex
WO2013141680A1 (en) 2012-03-20 2013-09-26 Vilnius University RNA-DIRECTED DNA CLEAVAGE BY THE Cas9-crRNA COMPLEX
WO2013163628A2 (en) 2012-04-27 2013-10-31 Duke University Genetic correction of mutated genes
MX362866B (en) 2012-05-25 2019-02-20 Univ California Methods and compositions for rna-directed target dna modification and for rna-directed modulation of transcription.
US9890364B2 (en) 2012-05-29 2018-02-13 The General Hospital Corporation TAL-Tet1 fusion proteins and methods of use thereof
EP3808844A1 (en) 2012-07-25 2021-04-21 The Broad Institute, Inc. Inducible dna binding proteins and genome perturbation tools and applications thereof
WO2014022702A2 (en) 2012-08-03 2014-02-06 The Regents Of The University Of California Methods and compositions for controlling gene expression by rna processing
UA118957C2 (en) * 2012-08-29 2019-04-10 Сангамо Біосайєнсиз, Інк. Methods and compositions for treatment of a genetic condition
EP3789405A1 (en) 2012-10-12 2021-03-10 The General Hospital Corporation Transcription activator-like effector (tale) - lysine-specific demethylase 1 (lsd1) fusion proteins
EP3372679A1 (en) 2012-10-23 2018-09-12 Toolgen Incorporated Composition for cleaving a target dna comprising a guide rna specific for the target dna and cas protein-encoding nucleic acid or cas protein, and use thereof
PT3138910T (en) 2012-12-06 2017-10-18 Sigma Aldrich Co Llc Crispr-based genome modification and regulation
WO2014093479A1 (en) 2012-12-11 2014-06-19 Montana State University Crispr (clustered regularly interspaced short palindromic repeats) rna-guided control of gene regulation
US20140310830A1 (en) 2012-12-12 2014-10-16 Feng Zhang CRISPR-Cas Nickase Systems, Methods And Compositions For Sequence Manipulation in Eukaryotes
US20140189896A1 (en) 2012-12-12 2014-07-03 Feng Zhang Crispr-cas component systems, methods and compositions for sequence manipulation
EP2932421A1 (en) 2012-12-12 2015-10-21 The Broad Institute, Inc. Methods, systems, and apparatus for identifying target sequences for cas enzymes or crispr-cas systems for target sequences and conveying results thereof
EP3434776A1 (en) 2012-12-12 2019-01-30 The Broad Institute, Inc. Methods, models, systems, and apparatus for identifying target sequences for cas enzymes or crispr-cas systems for target sequences and conveying results thereof
AU2013359212B2 (en) 2012-12-12 2017-01-19 Massachusetts Institute Of Technology Engineering and optimization of improved systems, methods and enzyme compositions for sequence manipulation
CN113528577A (en) 2012-12-12 2021-10-22 布罗德研究所有限公司 Engineering of systems, methods and optimized guide compositions for sequence manipulation
EP2931897B1 (en) 2012-12-12 2017-11-01 The Broad Institute, Inc. Delivery, engineering and optimization of systems, methods and compositions for sequence manipulation and therapeutic applications
US8697359B1 (en) 2012-12-12 2014-04-15 The Broad Institute, Inc. CRISPR-Cas systems and methods for altering expression of gene products
US8993233B2 (en) 2012-12-12 2015-03-31 The Broad Institute Inc. Engineering and optimization of systems, methods and compositions for sequence manipulation with functional domains
KR20150095861A (en) 2012-12-17 2015-08-21 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 Rna-guided human genome engineering
WO2014124284A1 (en) 2013-02-07 2014-08-14 The General Hospital Corporation Tale transcriptional activators
JP2016519652A (en) 2013-03-14 2016-07-07 カリブー・バイオサイエンシーズ・インコーポレイテッド Nucleic acid targeting nucleic acid compositions and methods
EP3988667A1 (en) 2013-03-15 2022-04-27 The General Hospital Corporation Using truncated guide rnas (tru-grnas) to increase specificity for rna-guided genome editing
US9828582B2 (en) 2013-03-19 2017-11-28 Duke University Compositions and methods for the induction and tuning of gene expression
US9873894B2 (en) 2013-05-15 2018-01-23 Sangamo Therapeutics, Inc. Methods and compositions for treatment of a genetic condition
EP3603679B1 (en) 2013-06-04 2022-08-10 President and Fellows of Harvard College Rna-guided transcriptional regulation
EP4389903A2 (en) 2013-06-05 2024-06-26 Duke University Rna-guided gene editing and gene regulation
AU2014281027A1 (en) 2013-06-17 2016-01-28 Massachusetts Institute Of Technology Optimized CRISPR-Cas double nickase systems, methods and compositions for sequence manipulation
US10011850B2 (en) 2013-06-21 2018-07-03 The General Hospital Corporation Using RNA-guided FokI Nucleases (RFNs) to increase specificity for RNA-Guided Genome Editing
JP2016528890A (en) * 2013-07-09 2016-09-23 プレジデント アンド フェローズ オブ ハーバード カレッジ Therapeutic use of genome editing using the CRISPR / Cas system
IL243475B2 (en) 2013-07-09 2023-11-01 Harvard College Multiplex rna-guided genome engineering
CN110819658B (en) 2013-07-10 2024-03-22 哈佛大学校长及研究员协会 Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
US11306328B2 (en) 2013-07-26 2022-04-19 President And Fellows Of Harvard College Genome engineering
US20150044192A1 (en) 2013-08-09 2015-02-12 President And Fellows Of Harvard College Methods for identifying a target site of a cas9 nuclease
US9359599B2 (en) 2013-08-22 2016-06-07 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US9340800B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College Extended DNA-sensing GRNAS
US9526784B2 (en) 2013-09-06 2016-12-27 President And Fellows Of Harvard College Delivery system for functional nucleases
US9388430B2 (en) 2013-09-06 2016-07-12 President And Fellows Of Harvard College Cas9-recombinase fusion proteins and uses thereof
US10531378B2 (en) 2013-09-27 2020-01-07 Kyocera Corporation User equipment detection for energy saving cell activation
US20160237455A1 (en) * 2013-09-27 2016-08-18 Editas Medicine, Inc. Crispr-related methods and compositions
KR102380245B1 (en) 2013-11-07 2022-03-30 에디타스 메디신, 인코포레이티드 CRISPR-RELATED METHODS AND COMPOSITIONS WITH GOVERNING gRNAS
JP2016537028A (en) * 2013-11-18 2016-12-01 クリスパー セラピューティクス アーゲー CRISPR-CAS System Materials and Methods
US9074199B1 (en) 2013-11-19 2015-07-07 President And Fellows Of Harvard College Mutant Cas9 proteins
US10787684B2 (en) 2013-11-19 2020-09-29 President And Fellows Of Harvard College Large gene excision and insertion
US20150166982A1 (en) 2013-12-12 2015-06-18 President And Fellows Of Harvard College Methods for correcting pi3k point mutations
CA2932478A1 (en) * 2013-12-12 2015-06-18 Massachusetts Institute Of Technology Delivery, use and therapeutic applications of the crispr-cas systems and compositions for genome editing
CA2935032C (en) 2013-12-26 2024-01-23 The General Hospital Corporation Multiplex guide rnas
EP3553176A1 (en) 2014-03-10 2019-10-16 Editas Medicine, Inc. Crispr/cas-related methods and compositions for treating leber's congenital amaurosis 10 (lca10)
WO2015148860A1 (en) 2014-03-26 2015-10-01 Editas Medicine, Inc. Crispr/cas-related methods and compositions for treating beta-thalassemia
EP3981876A1 (en) 2014-03-26 2022-04-13 Editas Medicine, Inc. Crispr/cas-related methods and compositions for treating sickle cell disease
EP3152319A4 (en) 2014-06-05 2017-12-27 Sangamo BioSciences, Inc. Methods and compositions for nuclease design
WO2015195621A1 (en) 2014-06-16 2015-12-23 The Johns Hopkins University Compositions and methods for the expression of crispr guide rnas using the h1 promoter
US11254933B2 (en) 2014-07-14 2022-02-22 The Regents Of The University Of California CRISPR/Cas transcriptional modulation
US10077453B2 (en) 2014-07-30 2018-09-18 President And Fellows Of Harvard College CAS9 proteins including ligand-dependent inteins
WO2016073990A2 (en) 2014-11-07 2016-05-12 Editas Medicine, Inc. Methods for improving crispr/cas-mediated genome-editing
CN107532182A (en) 2015-02-23 2018-01-02 克里斯珀医疗股份公司 Treat the material and method of hemoglobinopathy
EP3274453B1 (en) 2015-03-26 2021-01-27 Editas Medicine, Inc. Crispr/cas-mediated gene conversion
US20160324987A1 (en) 2015-04-15 2016-11-10 Cedars-Sinai Medical Center Use of crispr/cas9 as in vivo gene therapy to generate targeted genomic disruptions in genes bearing dominant mutations for retinitis pigmentosa
CA2986310A1 (en) 2015-05-11 2016-11-17 Editas Medicine, Inc. Optimized crispr/cas9 systems and methods for gene editing in stem cells
JP6985250B2 (en) 2015-05-16 2021-12-22 ジェンザイム・コーポレーション Gene editing of deep intron mutations
CA3012607A1 (en) 2015-06-18 2016-12-22 The Broad Institute Inc. Crispr enzymes and systems
WO2017015637A1 (en) 2015-07-22 2017-01-26 Duke University High-throughput screening of regulatory element function with epigenome editing technologies
MX2018002339A (en) 2015-08-25 2018-12-19 Univ Duke Compositions and methods of improving specificity in genomic engineering using rna-guided endonucleases.
US10526590B2 (en) 2015-08-31 2020-01-07 Agilent Technologies, Inc. Compounds and methods for CRISPR/Cas-based genome editing by homologous recombination
EP3153776A1 (en) 2015-10-08 2017-04-12 Improbed AB Bed management cycle for a fluidized bed boiler and corresponding arrangement
US20180273609A1 (en) 2015-11-04 2018-09-27 Crispr Therapeutics Ag Materials and methods for treatment of hemoglobinopathies
KR102670601B1 (en) 2016-04-19 2024-05-29 더 브로드 인스티튜트, 인코퍼레이티드 The novel CRISPR enzyme and system
WO2017191503A1 (en) 2016-05-05 2017-11-09 Crispr Therapeutics Ag Materials and methods for treatment of hemoglobinopathies
WO2018009562A1 (en) 2016-07-05 2018-01-11 The Johns Hopkins University Crispr/cas9-based compositions and methods for treating retinal degenerations
EP3487523B1 (en) 2016-07-19 2023-09-06 Duke University Therapeutic applications of cpf1-based genome editing
EP3494220A1 (en) 2016-08-02 2019-06-12 Editas Medicine, Inc. Compositions and methods for treating cep290 associated disease
CA3048434A1 (en) 2016-12-30 2018-07-05 Editas Medicine, Inc. Synthetic guide molecules, compositions and methods relating thereto
TW201839136A (en) 2017-02-06 2018-11-01 瑞士商諾華公司 Compositions and methods for the treatment of hemoglobinopathies
EP3596217A1 (en) 2017-03-14 2020-01-22 Editas Medicine, Inc. Systems and methods for the treatment of hemoglobinopathies
EP3622070A2 (en) 2017-05-10 2020-03-18 Editas Medicine, Inc. Crispr/rna-guided nuclease systems and methods
SG11202008956XA (en) 2018-03-14 2020-10-29 Editas Medicine Inc Systems and methods for the treatment of hemoglobinopathies
WO2019178416A1 (en) 2018-03-14 2019-09-19 Editas Medicine, Inc. Systems and methods for the treatment of hemoglobinopathies

Cited By (113)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US12006520B2 (en) 2011-07-22 2024-06-11 President And Fellows Of Harvard College Evaluation and improvement of nuclease cleavage specificity
US10323236B2 (en) 2011-07-22 2019-06-18 President And Fellows Of Harvard College Evaluation and improvement of nuclease cleavage specificity
US10508298B2 (en) 2013-08-09 2019-12-17 President And Fellows Of Harvard College Methods for identifying a target site of a CAS9 nuclease
US11920181B2 (en) 2013-08-09 2024-03-05 President And Fellows Of Harvard College Nuclease profiling system
US10954548B2 (en) 2013-08-09 2021-03-23 President And Fellows Of Harvard College Nuclease profiling system
US10227581B2 (en) 2013-08-22 2019-03-12 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US11046948B2 (en) 2013-08-22 2021-06-29 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US10682410B2 (en) 2013-09-06 2020-06-16 President And Fellows Of Harvard College Delivery system for functional nucleases
US9999671B2 (en) 2013-09-06 2018-06-19 President And Fellows Of Harvard College Delivery of negatively charged proteins using cationic lipids
US9340800B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College Extended DNA-sensing GRNAS
US10912833B2 (en) 2013-09-06 2021-02-09 President And Fellows Of Harvard College Delivery of negatively charged proteins using cationic lipids
US9737604B2 (en) 2013-09-06 2017-08-22 President And Fellows Of Harvard College Use of cationic lipids to deliver CAS9
US9388430B2 (en) 2013-09-06 2016-07-12 President And Fellows Of Harvard College Cas9-recombinase fusion proteins and uses thereof
US10597679B2 (en) 2013-09-06 2020-03-24 President And Fellows Of Harvard College Switchable Cas9 nucleases and uses thereof
US11299755B2 (en) 2013-09-06 2022-04-12 President And Fellows Of Harvard College Switchable CAS9 nucleases and uses thereof
US9340799B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College MRNA-sensing switchable gRNAs
US9526784B2 (en) 2013-09-06 2016-12-27 President And Fellows Of Harvard College Delivery system for functional nucleases
US10858639B2 (en) 2013-09-06 2020-12-08 President And Fellows Of Harvard College CAS9 variants and uses thereof
US9834791B2 (en) 2013-11-07 2017-12-05 Editas Medicine, Inc. CRISPR-related methods and compositions with governing gRNAS
US11390887B2 (en) 2013-11-07 2022-07-19 Editas Medicine, Inc. CRISPR-related methods and compositions with governing gRNAS
US10640788B2 (en) 2013-11-07 2020-05-05 Editas Medicine, Inc. CRISPR-related methods and compositions with governing gRNAs
US10190137B2 (en) 2013-11-07 2019-01-29 Editas Medicine, Inc. CRISPR-related methods and compositions with governing gRNAS
US9840699B2 (en) 2013-12-12 2017-12-12 President And Fellows Of Harvard College Methods for nucleic acid editing
US11124782B2 (en) 2013-12-12 2021-09-21 President And Fellows Of Harvard College Cas variants for gene editing
US11053481B2 (en) 2013-12-12 2021-07-06 President And Fellows Of Harvard College Fusions of Cas9 domains and nucleic acid-editing domains
US10465176B2 (en) 2013-12-12 2019-11-05 President And Fellows Of Harvard College Cas variants for gene editing
US11242525B2 (en) 2014-03-26 2022-02-08 Editas Medicine, Inc. CRISPR/CAS-related methods and compositions for treating sickle cell disease
US11124794B2 (en) 2014-04-25 2021-09-21 The Children's Medical Center Corporation Compositions and methods to treating hemoglobinopathies
US11739329B2 (en) 2014-04-25 2023-08-29 The Children's Medical Center Corporation Compositions and methods to treating hemoglobinopathies
US10704062B2 (en) 2014-07-30 2020-07-07 President And Fellows Of Harvard College CAS9 proteins including ligand-dependent inteins
US11578343B2 (en) 2014-07-30 2023-02-14 President And Fellows Of Harvard College CAS9 proteins including ligand-dependent inteins
US10077453B2 (en) 2014-07-30 2018-09-18 President And Fellows Of Harvard College CAS9 proteins including ligand-dependent inteins
EP3985115A1 (en) 2014-12-12 2022-04-20 The Broad Institute, Inc. Protected guide rnas (pgrnas)
WO2016094874A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Escorted and functionalized guides for crispr-cas systems
WO2016094880A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Delivery, use and therapeutic applications of crispr systems and compositions for genome editing as to hematopoietic stem cells (hscs)
EP3889260A1 (en) 2014-12-12 2021-10-06 The Broad Institute, Inc. Protected guide rnas (pgrnas)
WO2016094867A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Protected guide rnas (pgrnas)
WO2016094872A1 (en) 2014-12-12 2016-06-16 The Broad Institute Inc. Dead guides for crispr transcription factors
US10954514B2 (en) 2014-12-12 2021-03-23 The Broad Institute, Inc. Escorted and functionalized guides for CRISPR-Cas systems
WO2016106244A1 (en) 2014-12-24 2016-06-30 The Broad Institute Inc. Crispr having or associated with destabilization domains
EP3702456A1 (en) 2014-12-24 2020-09-02 The Broad Institute, Inc. Crispr having or associated with destabilization domains
US10738305B2 (en) 2015-02-23 2020-08-11 Vertex Pharmaceuticals Incorporated Materials and methods for treatment of hemoglobinopathies
EP3851530A1 (en) * 2015-03-26 2021-07-21 Editas Medicine, Inc. Crispr/cas-mediated gene conversion
WO2016154579A3 (en) * 2015-03-26 2017-01-26 Editas Medicine, Inc. Crispr/cas-mediated gene conversion
EP3763814A1 (en) * 2015-05-08 2021-01-13 The Children's Medical Center Corporation Targeting bcl11a enhancer functional regions for fetal hemoglobin reinduction
US11572543B2 (en) 2015-05-08 2023-02-07 The Children's Medical Center. Corporation Targeting BCL11A enhancer functional regions for fetal hemoglobin reinduction
US11390884B2 (en) 2015-05-11 2022-07-19 Editas Medicine, Inc. Optimized CRISPR/cas9 systems and methods for gene editing in stem cells
US11911415B2 (en) 2015-06-09 2024-02-27 Editas Medicine, Inc. CRISPR/Cas-related methods and compositions for improving transplantation
US11180751B2 (en) 2015-06-18 2021-11-23 The Broad Institute, Inc. CRISPR enzymes and systems
US11497816B2 (en) * 2015-10-06 2022-11-15 The Children's Hospital Of Philadelphia Compositions and methods for treating fragile X syndrome and related syndromes
WO2017062855A1 (en) * 2015-10-09 2017-04-13 Monsanto Technology Llc Novel rna-guided nucleases and uses thereof
US11692182B2 (en) 2015-10-09 2023-07-04 Monsanto Technology Llc RNA-guided DNA nucleases and uses thereof
US11214780B2 (en) 2015-10-23 2022-01-04 President And Fellows Of Harvard College Nucleobase editors and uses thereof
US10167457B2 (en) 2015-10-23 2019-01-01 President And Fellows Of Harvard College Nucleobase editors and uses thereof
EP3371306B1 (en) * 2015-11-04 2023-01-04 Crispr Therapeutics AG Materials and methods for treatment of hemoglobinopathies
JP2021166514A (en) * 2015-12-28 2021-10-21 ノバルティス アーゲー Compositions and methods for treatment of hemoglobinopathies
JP2019500043A (en) * 2015-12-28 2019-01-10 ノバルティス アーゲー Compositions and methods for the treatment of abnormal hemoglobinosis
US11773411B2 (en) 2016-01-11 2023-10-03 The Board Of Trustees Of The Leland Stanford Junior University Chimeric proteins and methods of regulating gene expression
US9856497B2 (en) 2016-01-11 2018-01-02 The Board Of Trustee Of The Leland Stanford Junior University Chimeric proteins and methods of regulating gene expression
US11111287B2 (en) 2016-01-11 2021-09-07 The Board Of Trustees Of The Leland Stanford Junior University Chimeric proteins and methods of immunotherapy
US10336807B2 (en) 2016-01-11 2019-07-02 The Board Of Trustees Of The Leland Stanford Junior University Chimeric proteins and methods of immunotherapy
US10457961B2 (en) 2016-01-11 2019-10-29 The Board Of Trustees Of The Leland Stanford Junior University Chimeric proteins and methods of regulating gene expression
JP2019508051A (en) * 2016-03-14 2019-03-28 エディタス・メディシン、インコーポレイテッド CRISPR / CAS-related methods and compositions for treating beta-hemoglobinopathy
IL261714B1 (en) * 2016-03-14 2024-06-01 Editas Medicine Inc Crispr/cas-related methods and compositions for treating beta hemoglobinopathies
WO2017160890A1 (en) * 2016-03-14 2017-09-21 Editas Medicine, Inc. Crispr/cas-related methods and compositions for treating beta hemoglobinopathies
EP3219799A1 (en) 2016-03-17 2017-09-20 IMBA-Institut für Molekulare Biotechnologie GmbH Conditional crispr sgrna expression
WO2017158153A1 (en) 2016-03-17 2017-09-21 Imba - Institut Für Molekulare Biotechnologie Gmbh Conditional crispr sgrna expression
WO2017216771A3 (en) * 2016-06-17 2018-02-01 Genesis Technologies Limited Crispr-cas system, materials and methods
US11702651B2 (en) 2016-08-03 2023-07-18 President And Fellows Of Harvard College Adenosine nucleobase editors and uses thereof
US10113163B2 (en) 2016-08-03 2018-10-30 President And Fellows Of Harvard College Adenosine nucleobase editors and uses thereof
US11999947B2 (en) 2016-08-03 2024-06-04 President And Fellows Of Harvard College Adenosine nucleobase editors and uses thereof
US10947530B2 (en) 2016-08-03 2021-03-16 President And Fellows Of Harvard College Adenosine nucleobase editors and uses thereof
US11661590B2 (en) 2016-08-09 2023-05-30 President And Fellows Of Harvard College Programmable CAS9-recombinase fusion proteins and uses thereof
US11352647B2 (en) 2016-08-17 2022-06-07 The Broad Institute, Inc. Crispr enzymes and systems
US11542509B2 (en) 2016-08-24 2023-01-03 President And Fellows Of Harvard College Incorporation of unnatural amino acids into proteins using base editing
US11306324B2 (en) 2016-10-14 2022-04-19 President And Fellows Of Harvard College AAV delivery of nucleobase editors
US10745677B2 (en) 2016-12-23 2020-08-18 President And Fellows Of Harvard College Editing of CCR5 receptor gene to protect against HIV infection
US11820969B2 (en) 2016-12-23 2023-11-21 President And Fellows Of Harvard College Editing of CCR2 receptor gene to protect against HIV infection
US20230111575A1 (en) * 2016-12-30 2023-04-13 Editas Medicine, Inc. Synthetic guide molecules, compositions and methods relating thereto
US11466271B2 (en) 2017-02-06 2022-10-11 Novartis Ag Compositions and methods for the treatment of hemoglobinopathies
US11898179B2 (en) 2017-03-09 2024-02-13 President And Fellows Of Harvard College Suppression of pain by gene editing
US11542496B2 (en) 2017-03-10 2023-01-03 President And Fellows Of Harvard College Cytosine to guanine base editor
US11851690B2 (en) 2017-03-14 2023-12-26 Editas Medicine, Inc. Systems and methods for the treatment of hemoglobinopathies
US11268082B2 (en) 2017-03-23 2022-03-08 President And Fellows Of Harvard College Nucleobase editors comprising nucleic acid programmable DNA binding proteins
US11963982B2 (en) 2017-05-10 2024-04-23 Editas Medicine, Inc. CRISPR/RNA-guided nuclease systems and methods
US11560566B2 (en) 2017-05-12 2023-01-24 President And Fellows Of Harvard College Aptazyme-embedded guide RNAs for use with CRISPR-Cas9 in genome editing and transcriptional activation
US11788087B2 (en) 2017-05-25 2023-10-17 The Children's Medical Center Corporation BCL11A guide delivery
US20210189435A1 (en) * 2017-06-05 2021-06-24 Guangzhou Ribobio Co., Ltd. System for DNA editing and uses thereof
US11866726B2 (en) 2017-07-14 2024-01-09 Editas Medicine, Inc. Systems and methods for targeted integration and genome editing and detection thereof using integrated priming sites
US11732274B2 (en) 2017-07-28 2023-08-22 President And Fellows Of Harvard College Methods and compositions for evolving base editors using phage-assisted continuous evolution (PACE)
US11932884B2 (en) 2017-08-30 2024-03-19 President And Fellows Of Harvard College High efficiency base editors comprising Gam
US11319532B2 (en) 2017-08-30 2022-05-03 President And Fellows Of Harvard College High efficiency base editors comprising Gam
CN107630018A (en) * 2017-09-30 2018-01-26 深圳三智医学科技有限公司 A kind of kit for being used to editing or repairing HBB gene
CN107630018B (en) * 2017-09-30 2018-10-12 深圳三智医学科技有限公司 A kind of kit for editing or repairing HBB gene
US11795443B2 (en) 2017-10-16 2023-10-24 The Broad Institute, Inc. Uses of adenosine base editors
US20190134118A1 (en) * 2017-10-18 2019-05-09 City Of Hope Adeno-associated virus compositions for restoring hbb gene function and methods of use thereof
WO2019094518A1 (en) 2017-11-07 2019-05-16 Editas Medicine, Inc. Targeted integration systems and methods for the treatment of hemoglobinopathies
US11268077B2 (en) 2018-02-05 2022-03-08 Vertex Pharmaceuticals Incorporated Materials and methods for treatment of hemoglobinopathies
JP2021505180A (en) * 2018-02-15 2021-02-18 シグマ−アルドリッチ・カンパニー・リミテッド・ライアビリティ・カンパニーSigma−Aldrich Co. LLC Manipulated Cas9 system for eukaryotic genome modification
CN111902536A (en) * 2018-02-15 2020-11-06 西格马-奥尔德里奇有限责任公司 Engineered CAS9 system for eukaryotic genome modification
JP7109547B2 (en) 2018-02-15 2022-07-29 シグマ-アルドリッチ・カンパニー・リミテッド・ライアビリティ・カンパニー An engineered Cas9 system for eukaryotic genome modification
WO2019178427A1 (en) 2018-03-14 2019-09-19 Arbor Biotechnologies, Inc. Novel crispr dna targeting enzymes and systems
EP4257696A2 (en) 2018-03-14 2023-10-11 Arbor Biotechnologies, Inc. Novel crispr dna targeting enzymes and systems
WO2020131862A1 (en) 2018-12-17 2020-06-25 The Broad Institute, Inc. Crispr-associated transposase systems and methods of use thereof
US11447770B1 (en) 2019-03-19 2022-09-20 The Broad Institute, Inc. Methods and compositions for prime editing nucleotide sequences
US11795452B2 (en) 2019-03-19 2023-10-24 The Broad Institute, Inc. Methods and compositions for prime editing nucleotide sequences
US11643652B2 (en) 2019-03-19 2023-05-09 The Broad Institute, Inc. Methods and compositions for prime editing nucleotide sequences
WO2020257325A1 (en) * 2019-06-17 2020-12-24 Vertex Pharmaceuticals Inc. Compositions and methods for editing beta-globin for treatment of hemaglobinopathies
WO2021067788A1 (en) 2019-10-03 2021-04-08 Artisan Development Labs, Inc. Crispr systems with engineered dual guide nucleic acids
US11912985B2 (en) 2020-05-08 2024-02-27 The Broad Institute, Inc. Methods and compositions for simultaneous editing of both strands of a target double-stranded nucleotide sequence
WO2022256448A2 (en) 2021-06-01 2022-12-08 Artisan Development Labs, Inc. Compositions and methods for targeting, editing, or modifying genes
WO2022266538A2 (en) 2021-06-18 2022-12-22 Artisan Development Labs, Inc. Compositions and methods for targeting, editing or modifying human genes
WO2023167882A1 (en) 2022-03-01 2023-09-07 Artisan Development Labs, Inc. Composition and methods for transgene insertion

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