US20230026726A1 - Crispr/cas-related methods and compositions for treating sickle cell disease - Google Patents

Crispr/cas-related methods and compositions for treating sickle cell disease Download PDF

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US20230026726A1
US20230026726A1 US17/666,390 US202217666390A US2023026726A1 US 20230026726 A1 US20230026726 A1 US 20230026726A1 US 202217666390 A US202217666390 A US 202217666390A US 2023026726 A1 US2023026726 A1 US 2023026726A1
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Ari E. Friedland
Morgan L. Maeder
G. Grant Welstead
David A. Bumcrot
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Definitions

  • the invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Sickle Cell Disease (SCD).
  • SCD Sickle Cell Disease
  • SCD Sickle Cell Disease
  • SCA Sickle Cell Anemia
  • SCD is caused by a mutation in the beta-globin (HBB) gene.
  • HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, G gamma chain.
  • the alpha-globin gene is located on chromosome 16.
  • a point mutation e.g., GAG ⁇ GTG
  • Beta hemoglobin chains with this mutation are expressed as HbS.
  • the disease is inherited in an autosomal recessive manner, so that only patients with two HbS alleles have SCD. Subjects who have sickle cell trait (are heterozygous for HbS) only display a phenotype if they are severely dehydrated or oxygen deprived.
  • Hb Normal adult hemoglobin
  • SCD normal adult hemoglobin
  • the valine at position 6 of the beta-chain is hydrophobic and causes a change in conformation of the beta-globin protein when it is not bound to oxygen.
  • HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs) found in SCD.
  • Sickle shape RBCs cause multiple manifestations of disease, which include, e.g., anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome.
  • the disease has varous manifestations, e.g., vaso-occlusive crisis, splenic sequestration crisis and anemia.
  • Subjects may also suffer from acute chest crisis and infarcts of extremities, end organs and central nervous system.
  • Treatment includes, e.g., hydration, transfusion and analgesics.
  • Treatment of SCD also includes, e.g., the use of hydroxyurea, supplementation with folic acid, and penicillin prophylaxis during childhood. Bone marrow transplants have been demonstrated to cure SCD.
  • SCD Sickle Cell Disease
  • SCA Sickle Cell Anemia
  • Hb normal hemoglobin
  • HBB beta-globin
  • GAG ⁇ GTG point mutation
  • HbS sickle hemoglobin
  • RBCs sickle shaped red blood cells
  • Sickle shaped RBCs give rise to multiple manifestations of disease, such as, anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome.
  • Alpha-globin can also pair with fetal hemoglobin (HbF), which significantly moderates the severe anemia and other symptoms of SCD.
  • HbF fetal hemoglobin
  • Methods and compositions disclosed herein provide a number of approaches for treating SCD. As is discussed in more detail below, methods described herein provide for treating SCD by correcting a target position in the HBB gene to provide corrected, or functional, e.g., wild type, beta-globin. Methods and compositions discussed herein can be used to treat or prevent SCD by altering the BCL11A gene (also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF). BCL11A encodes a zinc-finger protein that is involved in the regulation of globin gene expression.
  • BCL11A also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF.
  • BCL11A encodes a zinc-finger protein that is involved in the regulation of globin gene
  • the levels of gamma globin can be increased.
  • Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating SCD disease phenotypes.
  • methods and compositions discussed herein provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • HBB gene also known as beta-globin and CD113t-C
  • SCD SCD-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypoxia-associated hypothaliana thaliana thaliana thaliana
  • SCD target point position refers to a target position in the HBB gene, typically a single nucleotide, which, if mutated, can result in a protein having a mutant amino acid and give rise to SCD.
  • the SCD target position is the target position at which a change can give rise to an E6 mutant protein, e.g., a protein having an E6V substitution.
  • E6 mutant protein e.g., E6V mutant protein
  • the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a deletion, in the HBB gene that gives rise to SCD.
  • a mutation at an SCD target point position in the HBB gene is corrected, e.g., by homology directed repair (HDR), as described herein.
  • HDR homology directed repair
  • methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD, by targeting the BCL11A gene, e.g., coding or non-coding regions of the BCL11A gene.
  • Altering the BCL11A gene herein refers to reducing or eliminating (1) BCL11A gene expression, (2) BCL11A protein function, or (3) the level of BCL11A protein.
  • the coding region e.g., an early coding region
  • a non-coding sequence e.g., an enhancer region, a promoter region, an intron, 5′UTR, 3′UTR, or polyadenylation signal
  • an enhancer region e.g., an enhancer region, a promoter region, an intron, 5′UTR, 3′UTR, or polyadenylation signal
  • the method provides an alteration that comprises disrupting the BCL11A gene by the insertion or deletion of one or more nucleotides mediated by Cas9 (e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase) as described below.
  • Cas9 e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase
  • This type of alteration is also referred to as “knocking out” the BCL11A gene.
  • the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCL11A gene and is mediated by enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described below.
  • This type of alteration is also referred to as “knocking down” the BCL11A gene.
  • the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD by knocking out one or both alleles of the BCL11A gene.
  • the coding region e.g., an early coding region
  • a non-coding region of the BCL11A gene e.g., an enhancer region, a promoter region, an intron, 5′ UTR, 3′UTR, polyadenylation signal
  • an enhancer region e.g., a promoter region, an intron, 5′ UTR, 3′UTR, polyadenylation signal
  • an enhancer e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer
  • BCL11A erythroid enhancer comprises an approximate 12.4 kb fragment of BCL11A intron2, located between approximate+52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52 kb to TSS+64.4 kb, see FIG. 10 ). It's also referred to herein as chromosome 2 location 60,716,189-60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly).
  • Deoxyribonuclease I hypersensitive sites TSS+62 kb, TSS+58 kb and TSS+55 kb are located in this region.
  • Deoxyribonuclease I sensitivity is a marker for gene regulatory elements. While not wishing to be bound by theory, it's believed that deleting the ehancer region (e.g., TSS+52 kb to TSS+64.4 kb) may reduce or eliminate BCL11A expression in erythroid precursors which leads to gamma globin derepression while sparing BCL11A expression in nonerythoroid lineages.
  • the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1-hypersensitivie sites (DHS).
  • the method provides an alteration that comprises an insertion or deletion of one or more nucleotides.
  • a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9).
  • a targeted knockout approach alters the BCL11A gene. In an embodiment, a targeted knockout approach reduces or eliminates expression of functional BCL11A gene product. In an embodiment, targeting affects one or both alleles of the BCL11A gene. In an embodiment, an enhancer disruption approach reduces or eliminates expression of functional BCL11A gene product in the erythroid lineage.
  • SCD target knockout position refers to a position in the BCL11A gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in reduction or elimination of expression of functional BCL11A gene product.
  • the position is in the BCL11A coding region, e.g., an early coding region.
  • the position is in the BCL11A non-coding region, e.g., an enhancer region.
  • methods and compositions discussed herein provide for altering (e.g., knocking out) the BCL11A gene.
  • knocking out the BCL11A gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCL11A gene, or (2) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCL11A gene,
  • the SCD target knockout position is altered by genome editing using the CRISPR/Cas9 system.
  • the SCD target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the SCD target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCL11A gene.
  • the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCL11A gene.
  • a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene.
  • the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
  • a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene.
  • a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule.
  • a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
  • a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene.
  • the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule.
  • the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • two double strand breaks are introduced to flank the erythroid enhancer at the in the BCL11A gene (one 5′ and the other one 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two double strand breaks
  • the breaks, i.e., two double strand breaks can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks are introduced to flank the erythroid enhancer in the BCL11A gene (one set 5′ and the other set 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer.
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the double strand break and the pair of single strand breaks
  • the breaks e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks are introduced to flank the erythroid enhancer at the SCD target position in the BCL11A gene (one set 5′ and the other set 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer.
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two pairs of single strand breaks
  • the breaks e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD by knocking down one or both alleles of the BCL11A gene.
  • the coding region of the BCL11A gene is targeted to alter the gene.
  • a non-coding region e.g., an enhancer region, a promoter region, an intron, 5′ UTR, 3′UTR, polyadenylation signal
  • the promoter region of the BCL11A gene is targeted to knock down the expression of the BCL11A gene.
  • a targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCL11A gene.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • eiCas9 enzymatically inactive Cas9
  • chromatin modifying protein e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • SCD target knockdown position refers to a position, e.g., in the BCL11A gene, which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCL11A gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCL11A promoter sequence. In an embodiment, a position in the promoter sequence of the BCL11A gene is targeted by an enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described herein.
  • eiCas9 enzymatically inactive Cas9
  • one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a SCD target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
  • eiCas9 enzymatically inactive Cas9
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • SCD target position refers to any of an SCD target point position, SCD target knockout position, or SCD target knockdown position, as described herein.
  • a gRNA molecule e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the HBB gene or BCL11A gene.
  • the two or more cleavage events may be made by the same or different Cas9 proteins.
  • a single Cas9 nuclease may be used to create both double strand breaks.
  • a single Cas9 nickase may be used to create the two or more single strand breaks.
  • two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
  • the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule.
  • the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
  • the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered.
  • the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D.
  • the targeting domain is selected from those in Tables 1A-1D.
  • the targeting domain is:
  • the targeting domain of each guide RNA is selected from one of Tables 1A-1D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13D.
  • the targeting domain is selected from those in Tables 13A-13D.
  • the targeting domain is:
  • the targeting domain of each guide RNA is selected from one of Tables 13A-13D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C. In an embodiment, the targeting domain is selected from those in Tables 14A-14C.
  • each guide RNA is selected from one of Tables 14A-14C.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 24A-24D. In an embodiment, the targeting domain is selected from those in Tables 24A-24D.
  • the targeting domain of each guide RNA is selected from one of Tables 24A-24D.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 25A-25B. In an embodiment, the targeting domain is selected from those in Tables 25A-25B.
  • the targeting domain of each guide RNA is selected from one of Tables 25A-25B.
  • a point mutation in the HBB gene e.g., at E6, e.g., E6V
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 26. In an embodiment, the targeting domain is selected from those in Table 26.
  • the targeting domain of each guide RNA is selected from Table 26.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2F.
  • the targeting domain is selected from those in Tables 2A-2F.
  • the targeting domain is:
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Tables 2A-2F.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 4A-4E.
  • the targeting domain is selected from those in Table 4A-4E.
  • the targeting domain is:
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 4A-4E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 5A-5E. In an embodiment, the targeting domain is selected from those in Table 5A-5E.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 5A-5E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 6A-6B. In an embodiment, the targeting domain is selected from those in Table 6A-6B.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 6A-6B.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 15A-15D. In an embodiment, the targeting domain is selected from those in Table 15A-15D.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 15A-15D.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 16A-16E. In an embodiment, the targeting domain is selected from those in Table 16A-16E.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 16A-16E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 17A-17B. In an embodiment, the targeting domain is selected from those in Table 17A-17B.
  • the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 17A-17B.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D.
  • the targeting domain is selected from those in Tables 7A-7D.
  • the targeting domain is:
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 7A-7D.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8D. In an embodiment, the targeting domain is selected from those in Tables 8A-8D.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 8A-8D.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 9. In an embodiment, the targeting domain is selected from those in Table 9.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 9.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21E. In an embodiment, the targeting domain is selected from those in Tables 21A-21E.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 21A-21E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E. In an embodiment, the targeting domain is selected from those in Tables 22A-22E.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 22A-22E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23C. In an embodiment, the targeting domain is selected from those in Tables 23A-23C.
  • the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Table 23A-23C.
  • the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • the targeting domain is configured to target the promoter region of the BCL11A gene to block transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase.
  • One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3C. In an embodiment, the targeting domain is selected from those in Tables 3A-3C.
  • the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence
  • the targeting domain of each guide RNA is selected from one of Tables 3A-3C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10D. In an embodiment, the targeting domain is selected from those in Tables 10A-10D. In another embodiment, the targeting domain is:
  • each guide RNA is selected from one of Tables 10A-10D.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11D. In an embodiment, the targeting domain is selected from those in Tables 11A-11D.
  • each guide RNA is selected from one of Tables 11A-11D.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 12. In an embodiment, the targeting domain is selected from those in Table 12.
  • each guide RNA is selected from Table 12.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18C. In an embodiment, the targeting domain is selected from those in Tables 18A-18C.
  • each guide RNA is selected from one of Tables 18A-18C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is selected from those in Tables 19A-19E.
  • each guide RNA is selected from one of Tables 19A-19E.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is selected from those in Tables 20A-20C.
  • each guide RNA is selected from one of Tables 20A-20C.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence selected from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the targeting domain which is complementary with the BCL11A gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the gRNA e.g., a gRNA comprising a targeting domain, which is complementary with the HBB gene or BCL11A gene, is a modular gRNA.
  • the gRNA is a unimolecular or chimeric gRNA.
  • HBB gRNA as described herein may comprise from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising a “core domain”, and optionally a “secondary domain”
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a cleavage event e.g., a double strand or single strand break
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Krüppel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Krüppel-associated box
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • nucleic acid e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with an SCD target position, in the HBB gene or BCL11A gene as disclosed herein.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10
  • the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA.
  • the nucleic acid encodes a chimeric gRNA.
  • the nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a gRNA comprising from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from 5′ to 3′
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from 5′ to 3′
  • a targeting domain comprising from 5′ to 3′
  • a targeting domain comprising from 5′ to 3′
  • a targeting domain comprising from 5′ to 3′
  • a targeting domain comprising from 5′ to 3′
  • a targeting domain comprising from 5′ to 3′
  • a targeting domain comprising a “core domain”, and optionally a
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further comprises (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene or BCL11A gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene or BCL11A gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene or BCL11A gene.
  • a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • the nucleic acid encodes a second gRNA molecule.
  • the second gRNA is selected to target the same SCD target position as the first gRNA molecule.
  • the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule.
  • the third gRNA molecule and the fourth gRNA molecule are selected to target the same SCD target position as the first and/or second gRNA molecules.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A
  • the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA.
  • the nucleic acid encoding a second gRNA is a chimeric gRNA.
  • the third and/or fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any combination of modular or chimeric gRNAs may be used.
  • a nucleic acid may encode a second, a third, and/or a fourth gRNA comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from 5′ to 3′
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from 5′ to 3′
  • a targeting domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from 5′ to 3′
  • a linking domain comprising a “core domain”, and optionally a “secondary domain”
  • a first complementarity domain comprising from
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the nucleic acid when the HBB gene is corrected, e.g., by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene; and further may comprise (d) a template nucleic acid (in an embodiment where an ex
  • a mutation in the HBB gene is corrected, e.g., by HDR, using an exogenously provided template nucleic acid.
  • the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In an embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
  • the template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 27.
  • the template nucleic acid comprises a 5′ homology arm, e.g., a 5′ homology arm from Table 27.
  • the template nucleic acid comprises a 3′ homology arm, e.g., a 3′ homology arm from Table 27.
  • a mutation in the HBB gene is corrected, e.g., by HDR, without using an exogenously provided template nucleic acid. While not wishing to be bound by theory, it is believed that an endogenous region of homology can mediate HDR-based correction.
  • alteration of the target sequence occurs by HDR with an endogenous genomic donor sequence.
  • the endogenous genomic donor sequence is located on the same chromosome as the target sequence.
  • the endogenous genomic donor sequence is located on a different chromosome from the target sequence.
  • the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with an endogenous genomic donor sequence include, e.g., a point mutation at E6, e.g., E6V.
  • a nucleic acid may comprise (a) a sequence encoding a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, and (b) a sequence encoding a Cas9 molecule.
  • nucleic acid molecule e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
  • first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules may be AAV vectors.
  • the nucleic acid may further comprise (c) a sequence that encodes a second, third and/or fourth gRNA molecule as described herein.
  • the nucleic acid comprises (a), (b) and (c).
  • Each of (a) and (c) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • (a) and (c) are on different vectors.
  • a first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • a second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules are AAV vectors.
  • each of (a), (b), and (c) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • one of (a), (b), and (c) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • each of (a), (b) and (c) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector.
  • vectors e.g., different viral vectors, e.g., different AAV vector.
  • (a) may be on a first nucleic acid molecule
  • (c) on a third nucleic acid molecule may be AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
  • the nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein.
  • the nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein.
  • the promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
  • nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
  • compositions comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, as described herein.
  • the composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein.
  • a composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein.
  • a composition of (a), (b) and (c) may further comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used).
  • the composition is a pharmaceutical composition.
  • the Compositions described herein, e.g., pharmaceutical compositions described herein can be used in treating SCD in a subject, e.g., in accordance with a method disclosed herein.
  • a method of altering a cell comprising contacting said cell with: (a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets HBB gene or BCL11A gene, e.g., a gRNA; and optionally, (d) a template nucleic acid, as described herein.
  • the method comprises contacting said cell with (a) and (b).
  • the method comprises contacting said cell with (a), (b), and (c).
  • the method comprises contacting said cell with (a), (b), (c) and (d).
  • the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the cell.
  • the gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17
  • the method comprises contacting a cell from a subject suffering from or likely to develop SCD.
  • the cell may be from a subject having a mutation at an SCD target position in the HBB gene or a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • the cell being contacted in the disclosed method is an erythroid cell.
  • the contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In another embodiment, the contacting step may be performed in vivo.
  • the method of altering a cell as described herein comprises acquiring knowledge of the sequence at an SCD target position in said cell, prior to the contacting step.
  • Acquiring knowledge of the sequence at an SCD target position in the cell may be by sequencing the HBB gene or BCL11A gene, or a portion of the HBB gene or BCL11A gene.
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
  • a nucleic acid e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes (a) and optionally a second, third and/or fourth gRNA of (c).
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a method of treating or preventing a subject suffering from or likely to develop SCD e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
  • a gRNA that targets the HBB gene or BCL11A gene e.g., a gRNA disclosed herein;
  • a Cas9 molecule e.g., a Cas9 molecule disclosed herein;
  • a second gRNA that targets the HBB gene or BCL11A gene e.g., a second gRNA disclosed herein, and
  • the method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid disclosed herein.
  • a template nucleic acid in an embodiment where an exogenous template is used, e.g., a template nucleic acid disclosed herein.
  • a template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject.
  • the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the subject (or a cell from the subject).
  • contacting comprises contacting with (a) and (b).
  • contacting comprises contacting with (a), (b), and (c)(i).
  • contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
  • contacting comprises contacting with (a), (b), (c)(i) and (d).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (d).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • the gRNA of (a) or (c) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D
  • the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject.
  • the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject by sequencing the HBB gene or BCL11A gene or a portion of the HBB gene or BCL11A gene.
  • the method comprises correcting a mutation at an SCD target position in the HBB gene.
  • the method comprises correcting a mutation at an SCD target position in the HBB gene by HDR.
  • the method comprises introducing a mutation at an SCD target position in the BCL11A gene.
  • the method comprises introducing a mutation at an SCD target position in the BCL11A gene by NHEJ.
  • a Cas9 of (b) at least one guide RNA, e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intravenous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • IBM intra-bone marrow
  • contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
  • a Cas9 of (b) and at least one guide RNA are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a populations of cells from a subject is contacted ex vivo with (a), (b) and optionally (c) to correct the E6V mutation in the HBB gene and a second population of cells from the subject is contacted ex vivo with (a), (b) and optionally (c) to introduce a mutation in the BCL11A gene to knockout the BCL11A gene.
  • a mixture of the two cell populations may be returned to the subject's body to treat or prevent SCD.
  • a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intravenous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • IBM intra-bone marrow
  • contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a reaction mixture comprising a gRNA, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop SCD, or a subject having a mutation at an SCD target position in the HBB gene, or a cell from a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • kits comprising, (a) gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
  • a Cas9 molecule e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
  • a second gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
  • a third gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
  • a fourth gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
  • a template nucleic acid in an embodiment where an exogenous template is used, e.g., a template nucleic acid described herein.
  • the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • nucleic acid e.g., an AAV vector
  • the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject.
  • the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule.
  • the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule.
  • the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage.
  • the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA.
  • altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
  • compositions, reaction mixtures and kits, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
  • a governing gRNA molecule e.g., a governing gRNA molecule disclosed herein.
  • Headings including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
  • FIGS. 1 A- 1 I are representations of several exemplary gRNAs.
  • FIG. 1 A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes ( S. pyogenes ) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
  • FIG. 1 B depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
  • FIG. 1 C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
  • FIG. 1 D depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
  • FIG. 1 E depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
  • FIG. 1 F depicts a modular gRNA molecule derived in part from Streptococcus thermophilus ( S. thermophilus ) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
  • FIG. 1 G depicts an alignment of modular gRNA molecules of S. pyogenes and S. thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
  • FIGS. 1 H- 1 I depicts additional exemplary structures of unimolecular gRNA molecules.
  • FIG. 1 H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
  • FIG. 11 shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
  • FIGS. 2 A- 2 G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737).
  • the N-terminal RuvC-like domain is boxed and indicated with a “Y”.
  • the other two RuvC-like domains are boxed and indicated with a “B”.
  • the HNH-like domain is boxed and indicated by a “G”.
  • Sm S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4).
  • Motif this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; “*” indicates any amino acid found in the corresponding position of any of the four sequences; and “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • FIGS. 3 A- 3 B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance).
  • the last line of FIG. 3 B identifies 4 highly conserved residues.
  • FIGS. 4 A- 4 B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance).
  • the last line of FIG. 4 B identifies 3 highly conserved residues.
  • FIGS. 5 A- 5 C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance).
  • the last line of FIG. 5 C identifies conserved residues.
  • FIGS. 6 A- 6 B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance).
  • the last line of FIG. 6 B identifies 3 highly conserved residues.
  • FIGS. 7 A- 7 B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis ( N. meningitidis ).
  • the N-terminal RuvC-like domain is boxed and indicated with a “Y”.
  • the other two RuvC-like domains are boxed and indicated with a “B”.
  • the HNH-like domain is boxed and indicated with a “G”.
  • Sp S. pyogenes
  • Nm N. meningitidis .
  • Motif this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; “*” indicates any amino acid found in the corresponding position of any of the two sequences; “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • FIG. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an “R” is an SV40 NLS; sequence indicated as “G” is an HA tag; and sequence indicated by an “O” is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF).
  • FIGS. 9 A and 9 B are schematic representations of the domain organization of S. pyogenes Cas 9.
  • FIG. 9 A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes).
  • FIG. 9 B shows the percent homology of each domain across 83 Cas9 orthologs.
  • FIG. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCL11A intron 2.
  • Three erythroid DHSs are labeled as distance in kilobases from BCL11A TSS (+62, +58 and +55). BCL11A transcription is from right to left.
  • FIG. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCL11A locus.
  • FIGS. 12 A- 12 B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCL11A-2983W and BCL11A-2981W.
  • FIG. 12 A depicts schematic of DNA sequence recognized by BCL11A-2983W and BCL11A-2981W, which flanks the putative erythroid enhancer elements.
  • FIG. 12 B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • FIGS. 13 A- 13 B depicts detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
  • FIG. 13 A depicts Schematic of DNA sequence recognized by BCL11A-2995W and BCL11A-2984W, which flanks the putative erythroid enhancer elements.
  • FIG. 13 B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • FIG. 14 depicts a scheme of the pair 8/15 of gRNAs surrounding the sickle mutation in combination with a Cas9 nickase (D10A or N863A). The nickases are shown as the grey ovals.
  • FIG. 15 depicts the percentages of total editing event after a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A preprentation of at least three independent experiments for each condition is shown.
  • FIG. 16 A depicts the frequency of deletions a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A representation of at least 3 independent experiments for each condition is shown.
  • FIG. 16 B depicts the frequency distribution of the length of deletions using a wildtype Cas9 and gRNA 8 (similar results have been obtained with gRNA 15).
  • FIG. 16 C depicts the frequency distribution of the length of deletions using a Cas9 nickase (D10A) with gRNAs 8/15 (similar results have been obtained using Cas9 N863A).
  • FIG. 17 A depicts the frequency of gene conversion a wildtype Cas9 or a Cas9 nickase (D10A or N863A).
  • FIG. 17 B shows a scheme representing the region of similarity between the HBB and HBD loci.
  • FIG. 18 depicts the frequency of different lengths of HBD sequences that were incorporated into the HBB locus.
  • FIG. 19 A depicts the frequency of insertions using a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A representation of at least three independent experiments for each condition is shown.
  • FIG. 19 B depicts examples of common reads observed in U2OS cells electroporated with plasmid encoding Cas9 N863 and gRNA 8/15 pair.
  • the HBB reference is shown on the top.
  • FIG. 20 A is a schematic representation of the donor template.
  • FIG. 20 B depicts the frequency of HDR using a wildtype Cas9 or a Cas9 nickase (D10A or N863A).
  • FIG. 20 C depicts different forms of nonors and there contribution to HDR.
  • FIG. 21 depicts genome editing of the HBB locus in bone marrow leukemia K562 hematopoietic cells after electroporation of Cas9 protein complexed to HBB gRNAs 8 and 15 (RNP) or Cas9 mRNA co-delivered with HBB gRNAs 8 and 15 (RNA).
  • Alt-HDR refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid).
  • Alt-HDR is distinct from canonical HDR in that the process utilizes different pathways from canonical HDR, and can be inhibited by the canonical HDR mediators, RAD51 and BRCA2.
  • alt-HDR uses a single-stranded or nicked homologous nucleic acid for repair of the break.
  • Canonical HDR refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid).
  • Canonical HDR typically acts when there has been significant resection at the double strand break, forming at least one single stranded portion of DNA.
  • HDR typically involves a series of steps such as recognition of the break, stabilization of the break, resection, stabilization of single stranded DNA, formation of a DNA crossover intermediate, resolution of the crossover intermediate, and ligation. The process requires RAD51 and BRCA2, and the homologous nucleic acid is typically double-stranded.
  • HDR canonical HDR and alt-HDR.
  • Domain is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
  • Calculations of homology or sequence identity between two sequences are performed as follows.
  • the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes).
  • the optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5.
  • the amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared.
  • Governing gRNA molecule refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence.
  • a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the HBB or BCL11A gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b).
  • a nucleic acid molecule that encodes a CRISPR/Cas component comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component.
  • the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the HBB or BCL11A gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a CRISPR/Cas system component e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule.
  • the governing gRNA limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting.
  • a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex.
  • a governing gRNA reduces off-target or other unwanted activity.
  • a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
  • Modulator refers to an entity, e.g., a drug, that can alter the activity (e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence.
  • modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non-covalent bond, e.g., the attachment of a moiety, to the subject molecule.
  • a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule.
  • a modulator can increase, decrease, initiate, or eliminate a subject activity.
  • Large molecule refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologics, and carbohydrates.
  • polypeptide refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
  • Non-homologous end joining refers to ligation mediated repair and/or non-template mediated repair including canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
  • cNHEJ canonical NHEJ
  • altNHEJ alternative NHEJ
  • MMEJ microhomology-mediated end joining
  • SSA single-strand annealing
  • SD-MMEJ synthesis-dependent microhomology-mediated end joining
  • a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule.
  • Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus .
  • the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared.
  • the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
  • Replacement or “replaced”, as used herein with reference to a modification of a molecule does not require a process limitation but merely indicates that the replacement entity is present.
  • “Small molecule”, as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
  • Subject may mean either a human or non-human animal.
  • the term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats).
  • the subject is a human.
  • the subject is poultry.
  • Treatment mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
  • Prevent means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
  • X as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR.
  • mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells.
  • the method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • one HBB allele is repaired in the subject.
  • both HBB alleles are repaired in the subject.
  • the subject can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • methods and compositions discussed herein provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • the method provides for the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V.
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration in the HBB gene, e.g., an alternation associated with HDR.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • a second, third and/or fourth gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration associated with HDR in the HBB gene.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • a single strand break is accompanied by an additional single strand break, positioned by a second, third and/or fourth gRNA molecule, as discussed below.
  • the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in an alteration of the target position in the HBB gene, e.g., E6V.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second, third and/or fourth gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucle
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100
  • a mutation in the HBB gene e.g., E6V is corrected using an exogenously provided template nucleic acid, e.g., by HDR.
  • a mutation in the HBB gene e.g., E6V is corrected without using an exogenously provided template nucleic acid, e.g., by HDR.
  • alteration of the target sequence occurs with an endogenous genomic donor sequence, e.g., by HDR.
  • the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene.
  • a mutation in the HBB gene is corrected by an endogenous genomic donor sequence (e.g, an HBD gene).
  • an eaCas9 molecule e.g., an eaCas9 molecule described herein, is used.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase.
  • the eaCas9 molecule comprises a mutation at D10 (e.g., D10A).
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at H840 (e.g., H840A) or N863 (e.g., N863A).
  • H840 e.g., H840A
  • N863 e.g., N863A
  • BCL11A One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression.
  • BCL11A plays a role in the regulation of ⁇ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of ⁇ globin expression. The BCL11A gene product is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in 7 globin expression. In addition, it appears that the splicing of the BCL11A mRNA is developmentally regulated.
  • BCL11A-S and BCL11A-XS are primary expressed, while in adult cells, the longer BCL11A-L and BCL11A-XL mRNA variants are predominantly expressed.
  • BCL11A protein appears to interact with the ⁇ globin locus to alter its conformation and thus its expression at different developmental stages.
  • BCL11A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of ⁇ globin and HbF production.
  • Altering the SCD target position in the BCL11A gene is achieved, e.g., by:
  • methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCL11A gene.
  • methods described herein introduce two or more breaks to flank the erythroid enhancer of SCD target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer.
  • methods described herein comprises knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of SCD target knockdown position. All methods described herein result in alteration of the BCL11A gene.
  • the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the SCD target knockout position (e.g., the early coding region) of the BCL11A gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5′ or 3′ to) the early coding region of the SCD target knockout position, such that the break-induced indel could be reasonably expected to span the SCD target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the SCD target knockout position.
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a SCD target knockout position.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of a SCD target knockout position in the BCL11A gene.
  • a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • the breaks e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a SCD target knockout position in the BCL11A gene.
  • the breaks e.g., double strand or single strand breaks
  • the breaks are positioned on one side, e.g., upstream or downstream, of a nucleotide of a SCD target knockout position in the BCL11A gene.
  • a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below.
  • the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCL11A gene.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a SCD target knockout position in the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300,
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two double strand breaks-one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the first double strand break is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second double strand break is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ).
  • the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two double strand breaks
  • the first double strand break may be positioned as follows:
  • the first double strand break may be positioned in the BCL11A gene:
  • the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)—one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the two sets of breaks either the double strand break or the pair of single strand breaks
  • the SCD target knockdown position e.g., the erythroid enhancer
  • the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ).
  • the two sets of breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • the two sets of breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)-one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ).
  • the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two pairs of single strand breaks
  • the first pair of single strand breaks may be positioned as follows:
  • the pair of single strand breaks may be positioned in the BCL11A gene:
  • the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
  • the two sets of breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • a targeted knockdown approach reduces or eliminates expression of functional BCL11A gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • one or more eiCas9s may be used to block binding of one or more endogenous transcription factors.
  • an eiCas9 can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene.
  • One or more eiCas9s fused to one or more chromatin modifying proteins may be used to alter chromatin status.
  • Methods and compositions discussed herein may be used to alter the expression of the BCL11A gene to treat or prevent SCD by targeting a promoter region of the BCL11A gene.
  • the promoter region e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCL11A gene.
  • the methods and compositions discussed herein may be used to knock down the BCL11A gene to treat or prevent SCD by targeting 0.5 kb upstream or downstream of the TSS.
  • a targeted knockdown approach reduces or eliminates expression of functional BCL11A gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • eiCas9 enzymatically inactive Cas9
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR.
  • mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells.
  • the method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • one HBB allele is repaired in the subject.
  • both HBB alleles are repaired in the subject.
  • the subjects can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • the BCL11A gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
  • HbF fetal hemoglobin
  • Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues.
  • Subjects with beta-thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
  • knockout or knockdown of the BCL11A gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression.
  • BCL11A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin.
  • Knockout of the BCL11A gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta-thalassemia (HbF will form tetramers with hemoglobin alpha).
  • the BCL11A knockout or knockdown is targeted specifically to cells of the erythroid lineage.
  • BCL11A knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function.
  • erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells.
  • erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
  • the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with SCD.
  • subjects with beta thalassemia major will suffer from less severe anemia and will need fewer blood transfusions. They will therefore have fewer complications arising from transfusions and chelation therapy.
  • the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells.
  • subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy.
  • the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
  • Knockdown or knockout of one or both BCL11A alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
  • the method comprises initiating treatment of a subject prior to disease onset.
  • the method comprises initiating treatment of a subject after disease onset.
  • the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of SCD. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
  • the method comprises initiating treatment of a subject in an advanced stage of disease.
  • the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
  • the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
  • the method comprises initiating treatment of a subject who is transfusion-dependent.
  • the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
  • the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
  • a cell is treated, e.g., ex vivo.
  • an ex vivo treated cell is returned to a subject.
  • allogenic or autologous bone marrow or erythroid cells are treated ex vivo.
  • an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject.
  • an erythroid cell e.g., an autologous erythroid cell
  • an autologous stem cell is treated ex vivo and returned to the subject.
  • the modified HSCs are administered to the patient following no myeloablative pre-conditioning.
  • the modified HSCs are administered to the patient following mild myeloablative pre-conditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs.
  • the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
  • the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
  • IBM intra-bone marrow
  • the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
  • a parvovirus e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells.
  • two or more gRNA molecules are delivered.
  • a gRNA molecule refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid.
  • gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as “chimeric” gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules).
  • a gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
  • FIGS. 1 A- 1 G Several exemplary gRNA structures, with domains indicated thereon, are provided in FIGS. 1 A- 1 G . While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in FIGS. 1 A- 1 G and other depictions provided herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5′ to 3′:
  • a modular gRNA comprises:
  • FIGS. 1 A- 1 G provide examples of the placement of targeting domains.
  • the targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid.
  • the targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid.
  • the uracil bases in the targeting domain will pair with the adenine bases in the target sequence.
  • the target domain itself comprises in the 5′ to 3′ direction, an optional secondary domain, and a core domain.
  • the core domain is fully complementary with the target sequence.
  • the targeting domain is 5 to 50 nucleotides in length.
  • the strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • FIGS. 1 A- 1 G provide examples of first complementarity domains.
  • the first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the first complementarity domain is 5 to 30 nucleotides in length. In an embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain comprises 3 subdomains, which, in the 5′ to 3′ direction are: a 5′ subdomain, a central subdomain, and a 3′ subdomain.
  • the 5′ subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length.
  • the 3′ subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus , first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • FIGS. 1 A- 1 G provide examples of linking domains.
  • a linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA.
  • the linking domain can link the first and second complementarity domains covalently or non-covalently.
  • the linkage is covalent.
  • the linking domain covalently couples the first and second complementarity domains, see, e.g., FIGS. 1 B- 1 E .
  • the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain.
  • the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
  • the two molecules are associated by virtue of the hybridization of the complementarity domains see e.g., FIG. 1 A .
  • linking domains are suitable for use in unimolecular gRNA molecules.
  • Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length.
  • a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length.
  • a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length.
  • a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5′ to the second complementarity domain.
  • the linking domain has at least 50% homology with a linking domain disclosed herein.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • a modular gRNA can comprise additional sequence, 5′ to the second complementarity domain, referred to herein as the 5′ extension domain, see, e.g., FIG. 1 A .
  • the 5′ extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length.
  • the 5′ extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • FIGS. 1 A- 1 G provides examples of second complementarity domains.
  • the second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
  • the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the second complementarity domain comprises 3 subdomains, which, in the 5′ to 3′ direction are: a 5′ subdomain, a central subdomain, and a 3′ subdomain.
  • the 5′ subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length.
  • the 3′ subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the 5′ subdomain and the 3′ subdomain of the first complementarity domain are respectively, complementary, e.g., fully complementary, with the 3′ subdomain and the 5′ subdomain of the second complementarity domain.
  • the second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus , first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • FIGS. 1 A- 1 G provide examples of proximal domains.
  • the proximal domain is 5 to 20 nucleotides in length.
  • the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus , proximal domain.
  • nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
  • FIGS. 1 A- 1 G provide examples of tail domains.
  • the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length.
  • the tail domain nucleotides are from or share homology with sequence from the 5′ end of a naturally occurring tail domain, see e.g., panels 4a or 5a of FIG. 1 D or FIG. 1 E .
  • the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
  • the tail domain is absent or is 1 to 50 nucleotides in length.
  • the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus , tail domain.
  • the tail domain includes nucleotides at the 3′ end that are related to the method of in vitro or in vivo transcription.
  • these nucleotides may be any nucleotides present before the 3′ end of the DNA template.
  • these nucleotides may be the sequence UUUUUU.
  • alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
  • gRNA molecules The domains of gRNA molecules are described in more detail below.
  • the “targeting domain” of the gRNA is complementary to the “target domain” on the target nucleic acid.
  • the strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the “complementary strand” of the target nucleic acid.
  • Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg S H et al., Nature 2014 (doi: 10.1038/nature13011).
  • the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the targeting domain is 10+/ ⁇ 5, 20+/ ⁇ 5, 30+/ ⁇ 5, 40+/ ⁇ 5, 50+/ ⁇ 5, 60+/ ⁇ 5, 70+/ ⁇ 5, 80+/ ⁇ 5, 90+/ ⁇ 5, or 100+/ ⁇ 5 nucleotides, in length.
  • the targeting domain is 20+/ ⁇ 5 nucleotides in length.
  • the targeting domain is 20+/ ⁇ 10, 30+/ ⁇ 10, 40+/ ⁇ 10, 50+/ ⁇ 10, 60+/ ⁇ 10, 70+/ ⁇ 10, 80+/ ⁇ 10, 90+/ ⁇ 10, or 100+/ ⁇ 10 nucleotides, in length.
  • the targeting domain is 30+/ ⁇ 10 nucleotides in length.
  • the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the targeting domain has full complementarity with the target sequence.
  • the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
  • the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5′ end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3′ end.
  • the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5′ end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3′ end.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain (“non-complementary nucleotides”), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • non-complementary nucleotides two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
  • the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the targeting domain can be modified with a phosphorothioate, or other modification from Section VIII.
  • a nucleotide of the targeting domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • no nucleotide is modified within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in a system in Section IV.
  • the candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain. In another embodiment, 1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
  • the targeting domain comprises, preferably in the 5′ ⁇ 3′ direction: a secondary domain and a core domain. These domains are discussed in more detail below.
  • the “core domain” of the targeting domain is complementary to the “core domain target” on the target nucleic acid.
  • the core domain comprises about 8 to about 13 nucleotides from the 3′ end of the targeting domain (e.g., the most 3′ 8 to 13 nucleotides of the targeting domain).
  • the core domain and targeting domain are independently, 6+/ ⁇ 2, 7+/ ⁇ 2, 8+/ ⁇ 2, 9+/ ⁇ 2, 10+/ ⁇ 2, 11+/ ⁇ 2, 12+/ ⁇ 2, 13+/ ⁇ 2, 14+/ ⁇ 2, 15+/ ⁇ 2, or 16+ ⁇ 2, nucleotides in length.
  • the core domain and targeting domain are independently, 10+/ ⁇ 2 nucleotides in length.
  • the core domain and targeting domain are independently, 10+/ ⁇ 4 nucleotides in length.
  • the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18 nucleotides in length.
  • the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
  • the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
  • the core domain is complementary with the core domain target.
  • the core domain has exact complementarity with the core domain target.
  • the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the “secondary domain” of the targeting domain of the gRNA is complementary to the “secondary domain target” of the target nucleic acid.
  • the secondary domain is positioned 5′ to the core domain.
  • the secondary domain is absent or optional.
  • the targeting domain is 26 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 25 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 24 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 11 to 16 nucleotides in length.
  • the targeting domain is 23 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 10 to 15 nucleotides in length.
  • the targeting domain is 22 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 9 to 14 nucleotides in length.
  • the targeting domain is 21 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 8 to 13 nucleotides in length.
  • the targeting domain is 20 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 7 to 12 nucleotides in length.
  • the targeting domain is 19 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 6 to 11 nucleotides in length.
  • the targeting domain is 18 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 5 to 10 nucleotides in length.
  • the targeting domain is 17 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 4 to 9 nucleotides in length.
  • the targeting domain is 16 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 3 to 8 nucleotides in length.
  • the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
  • the secondary domain is complementary with the secondary domain target.
  • the secondary domain has exact complementarity with the secondary domain target.
  • the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the secondary domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the core domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • a core domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the secondary domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification from Section VIII.
  • a secondary domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
  • (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g., modifications from Section VIII) of the nucleotides of the secondary domain may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications.
  • the first complementarity domain is complementary with the second complementarity domain.
  • the first domain does not have exact complementarity with the second complementarity domain target.
  • the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain.
  • 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region.
  • an unpaired, or loop-out, region e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain.
  • the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5′ end of the second complementarity domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the first and second complementarity domains are:
  • the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
  • the first and second complementary domains independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the first and second complementary domains independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • the first and second complementary domains independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • the first and second complementary domains independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no nucleotide that is modified within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus , first complementarity domain, or a first complementarity domain described herein, e.g., from FIGS. 1 A- 1 G .
  • a reference first complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • first complementarity domain e.g., from FIGS. 1 A- 1 G .
  • the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus , second complementarity domain, or a second complementarity domain described herein, e.g., from FIGS. 1 A- 1 G .
  • a reference second complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • second complementarity domain e.g., from FIGS. 1 A- 1 G .
  • the duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
  • the first and second complementarity domains when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • first and second complementarity domains when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • first and second complementarity domains when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
  • a modular gRNA can comprise additional sequence, 5′ to the second complementarity domain.
  • the 5′ extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length.
  • the 5′ extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • the 5′ extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the 5′ extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the 5′ extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the 5′ extension domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • a 2′ modification e.g., a modification at the 2′ position on ribose
  • 2-acetylation e.g., a 2′ methylation
  • the 5′ extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5′ extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end, e.g., in a modular gRNA molecule. In an embodiment, the 5′ extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end, e.g., in a modular gRNA molecule.
  • the 5′ extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or more than 5 nucleotides away from one or both ends of the 5′ extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5′ extension domain.
  • no nucleotide is modified within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5′ extension domain.
  • Modifications in the 5′ extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate 5′ extension domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate 5′ extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the 5′ extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5′ extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5′ extension domain, or a 5′ extension domain described herein, e.g., from FIGS. 1 A- 1 G .
  • a reference 5′ extension domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • 5′ extension domain or a 5′ extension domain described herein, e.g., from FIGS. 1 A- 1 G .
  • the linking domain is disposed between the first and second complementarity domains.
  • the two molecules are associated with one another by the complementarity domains.
  • the linking domain is 10+/ ⁇ 5, 20+/ ⁇ 5, 30+/ ⁇ 5, 40+/ ⁇ 5, 50+/ ⁇ 5, 60+/ ⁇ 5, 70+/ ⁇ 5, 80+/ ⁇ 5, 90+/ ⁇ 5, or 100+/ ⁇ 5 nucleotides, in length.
  • the linking domain is 20+/ ⁇ 10, 30+/ ⁇ 10, 40+/ ⁇ 10, 50+/ ⁇ 10, 60+/ ⁇ 10, 70+/ ⁇ 10, 80+/ ⁇ 10, 90+/ ⁇ 10, or 100+/ ⁇ 10 nucleotides, in length.
  • the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
  • the linking domain is a covalent bond.
  • the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3′ end of the first complementarity domain and/or the 5-end of the second complementarity domain.
  • the duplexed region can be 20+/ ⁇ 10 base pairs in length.
  • the duplexed region can be 10+/ ⁇ 5, 15+/ ⁇ 5, 20+/ ⁇ 5, or 30+/ ⁇ 5 base pairs in length.
  • the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
  • sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
  • the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the linking domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the linking domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated a system described in Section IV.
  • a candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the linking domain has at least 60, 70, 80, 85, 90 or 95% homology 30 with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from FIGS. 1 A- 1 G .
  • the proximal domain is 6+/ ⁇ 2, 7+/ ⁇ 2, 8+/ ⁇ 2, 9+/ ⁇ 2, 10+/ ⁇ 2, 11+/ ⁇ 2, 12+/ ⁇ 2, 13+/ ⁇ 2, 14+/ ⁇ 2, 14+/ ⁇ 2, 16+/ ⁇ 2, 17+/ ⁇ 2, 18+/ ⁇ 2, 19+/ ⁇ 2, or 20+/ ⁇ 2 nucleotides in length.
  • the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the proximal domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the proximal domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • a 2′ modification e.g., a modification at the 2′ position on ribose
  • 2-acetylation e.g., a 2′ methylation
  • the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end, e.g., in a modular gRNA molecule.
  • the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • no nucleotide is modified within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus , proximal domain, or a proximal domain described herein, e.g., from FIGS. 1 A- 1 G .
  • the tail domain is 10+/ ⁇ 5, 20+/ ⁇ 5, 30+/ ⁇ 5, 40+/ ⁇ 5, 50+/ ⁇ 5, 60+/ ⁇ 5, 70+/ ⁇ 5, 80+/ ⁇ 5, 90+/ ⁇ 5, or 100+/ ⁇ 5 nucleotides, in length.
  • the tail domain is 20+/ ⁇ 5 nucleotides in length.
  • the tail domain is 20+/ ⁇ 10, 30+/ ⁇ 10, 40+/ ⁇ 10, 50+/ ⁇ 10, 60+/ ⁇ 10, 70+/ ⁇ 10, 80+/ ⁇ 10, 90+/ ⁇ 10, or 100+/ ⁇ 10 nucleotides, in length.
  • the tail domain is 25+/ ⁇ 10 nucleotides in length.
  • the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
  • the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the tail domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • a 2′ modification e.g., a modification at the 2′ position on ribose
  • 2-acetylation e.g., a 2′ methylation
  • the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus , tail domain, or a tail domain described herein, e.g., from FIGS. 1 A- 1 G .
  • a reference tail domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • tail domain or a tail domain described herein, e.g., from FIGS. 1 A- 1 G .
  • proximal and tail domain taken together comprise the following sequences:
  • the tail domain comprises the 3′ sequence UUUU, e.g., if an H1 promoter is used for transcription.
  • the tail domain comprises variable 3′ sequence derived from the DNA template if a T7 promoter is used.
  • the tail domain comprises variable 3′ sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
  • the tail domain comprises variable 3′ sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
  • Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • no nucleotide is modified within 5 nucleotides of the 5′ end of the tail domain, within 5 nucleotides of the 3′ end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
  • the linking domain is 1 to 5 nucleotides in length
  • the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5′ to 3′:
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 18 nucleotides e.g., 18 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 18 nucleotides in length
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 19 nucleotides e.g., 19 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 19 nucleotides in length
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUUU (SEQ ID NO: 45).
  • the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUACUAAAAC AAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUUU (SEQ ID NO: 40).
  • the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
  • FIGS. 1 H- 11 The sequences and structures of exemplary chimeric gRNAs are also shown in FIGS. 1 H- 11 .
  • a modular gRNA comprises:
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 5 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 16 nucleotides e.g., 16 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 16 nucleotides in length
  • the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 19 nucleotides e.g., 19 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 19 nucleotides in length
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
  • a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage.
  • software tools can identify all potential off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to a certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs.
  • the cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme.
  • Each possible gRNA can then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage.
  • Other functions e.g., automated reagent design for gRNA vector construction, primer design for the on-target Surveyor assay, and primer design for high-throughput detection and quantification of off-target cleavage via next-generation sequencing, can also be included in the tool.
  • Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein.
  • Guide RNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm.
  • Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb. 17. Bae S, Park J, Kim J S. PMID:24463181).
  • Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity.
  • an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface.
  • the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • gRNAs were ranked into tiers based on their distance to the target site, their orthogonality or presence of a 5′ G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes , a NGG PAM, in the case of S. aureus , a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis , a NNNNGATT or NNNNGCTT PAM).
  • Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence.
  • a “high level of orthogonality” or “good orthogonality” may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • S. pyogenes and N. meningitidis targets 17-mer, or 20-mer gRNAs were designed.
  • S. aureus targets 18-mer, 19-mer, 20-mer, 21-mer, 22-mer, 23-mer and 24-mer gRNAs were designed.
  • Targeting domains may comprise the 17-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 18-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 19-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18
  • Targeting domains may comprises the 21-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 22-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 23-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C,
  • Targeting domains may comprises the 24-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 15 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19
  • gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired “nickase” strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired “nickase” strategy is based on two considerations:
  • the targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • gRNAs were designed for use with S. pyogenes , and S. aureus Cas9 enzymes to target the E6V mutation in the HBB gene.
  • S. pyogenes S. aureus Cas9 enzymes to target the E6V mutation in the HBB gene.
  • three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 1A-1C).
  • the targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to target the E6V mutation in the HBB gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality.
  • Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5′G.
  • Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5′G. Note that tiers are non-inclusive (each gRNA is listed only once).
  • Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list.
  • the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 13A-13D) and 5 tiers for S. aureus (Tables 14A-14C).
  • the targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5′ G.
  • tier 2 gRNAs a short distance and high orthogonality were required but the presence of a 5′G was not required.
  • Tier 3 uses the same distance restriction and the requirement for a 5′G, but removes the requirement of good orthogonality.
  • Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5′G.
  • the targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5′ G.
  • tier 2 gRNAs For selection of tier 2 gRNAs, a short distance and high orthogonality were required but the presence of a 5′G was not required.
  • Tier 3 uses the same distance restriction and the requirement for a 5′G, but removes the requirement of good orthogonality.
  • Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5′G.
  • Tier 5 is selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier. In some instances, there are no corresponding exemplary gRNAs in certain tiers.
  • the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 24A-24D), 4 tiers for S. aureus (Tables 25A-25B) and 3 tiers for N. meningitidis (Tables 26).
  • the targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) a high level of orthogonality.
  • pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) the presence of a 5′G.
  • the targeting domain for tier 3 gRNA molecules to use with S. pyogenes Cas9 were selected based on distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation.
  • the targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation, (2) a high level of orthogonality and (3) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation, (2) the presence of a 5′G, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) PAM is NNGRRT.
  • aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) PAM is NNGRRV.
  • the targeting domain for tier 1 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) a high level of orthogonality.
  • the targeting domain for tier 2 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) the presence of a 5′G.
  • the targeting domain for tier 3 gRNA molecules to use with N. meningitidis Cas9 were selected based on distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation
  • dual targeting e.g., dual nicking
  • S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B in Table 24D (for S. pyogenes ). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B in Table 24D (for S. pyogenes ). For example, HBB-9, HBB-20can be combined with HBB-11, HBB-39.
  • gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to induce an insertion or deletion of one or more nucleotides mediated by NHEJ in close proximity to or within the early coding region.
  • three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • the gRNAs were identified and ranked into 4 tires for S. pyogenes (Tables 2A-2D).
  • the targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to knockout the BCL11A gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality.
  • Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5′G.
  • Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5′G.
  • Tier 4 only required the presence in the coding sequence. Note that tiers are non-inclusive (each gRNA is listed only once).
  • gRNAs for use with the S. aureus (Table 2E), and N. meningitidis (Table 2F) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • the gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 4A-4E), and S. aureus (Tables 5A-5E); and 2 tiers for N. meningitidis (Tables 6A-6B).
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality and (3) the presence of 5′G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) the presence of 5′G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon).
  • the targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon).
  • a target site e.g., start codon
  • the targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start cod
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon).
  • the targeting domain for tier 2 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon).
  • tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 15A-15D), and N. meningitidis (Tables 17A-17B); and 5 tiers for S. aureus (Tables 16A-16D).
  • the targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality.
  • pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon).
  • the targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon).
  • the gRNAs were identified and ranked into 5 tiers for S. aureus , when the relevant PAM was NNGRRT or NNGRRV.
  • the targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRT.
  • the targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a the target site (e.g., start codon) mutation, e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRV.
  • aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRT.
  • aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRV.
  • the gRNAs were identified and ranked into 3 tiers for N. meningitidis .
  • meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site, e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality.
  • meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon).
  • the targeting domain to be used with N were selected based on (1) distance to the target site, e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon).
  • meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon).
  • tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • the gRNA when a single gRNA molecule is used to target a Cas9 nickase to create a single strand break in close proximity to the BCL11A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • upstream of e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position
  • downstream of e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position
  • the gRNA when a single gRNA molecule is used to target a Cas9 nuclease to create a double strand break to in close proximity to the BCL11A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • upstream of e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position
  • downstream of e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position
  • dual targeting is used to create two double strand breaks to in close proximity to the mutation, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • upstream of e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position
  • downstream of e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position
  • the first and second gRNAs are used to target two Cas9 nucleases to flank, e.g., the first of gRNA is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), and the second gRNA is used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • the first of gRNA is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position)
  • the second gRNA is used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • dual targeting is used to create a double strand break and a pair of single strand breaks to delete a genomic sequence including the BCL11A target position.
  • the first, second and third gRNAs are used to target one Cas9 nuclease and two Cas9 nickases to flank, e.g., the first gRNA that will be used with the Cas9 nuclease is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position) or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position), and the second and third gRNAs that will be used with the Cas9 nickase pair are used to target the opposite side of the mutation (e.g., within 200 bp upstream or downstream of the BCL11A target position) in the BCL11A gene.
  • the first pair and second pair of gRNAs are used to target four Cas9 nickases to flank, e.g., the first pair of gRNAs are used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), and the second pair of gRNAs are used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • the first pair and second pair of gRNAs are used to target four Cas9 nickases to flank, e.g., the first pair of gRNAs are used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position)
  • the second pair of gRNAs are used to target downstream of (e.g., within 500 bp, e.g.,
  • dual targeting e.g., dual nicking
  • S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 15D (for S. pyogenes ). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 15D (for S. pyogenes ).
  • BCL11A-5355 or BCL11A-5380 can be combined with BCL11A-5321 or BCL11A-5416; or BCL11A-5333, BCL11A-5354, or BCL11A-5329 can be combined with BCL11A-5367 or BCL11A-5341.

Abstract

CRISPR/CAS-related compositions and methods for treatment of Sickle Cell Disease (SCD) are disclosed.

Description

    REFERENCE TO RELATED APPLICATIONS
  • The present application is a continuation of U.S. application Ser. No. 15/129,367, filed Sep. 26, 2016, which is a national phase of International Application No. PCT/US2015/022856, filed Mar. 26, 2015, which claims the benefit of U.S. Provisional Application No. 61/970,588, filed Mar. 26, 2014, and U.S. Provisional Application No. 62/084,487, filed Nov. 25, 2014, the contents of each of which are hereby incorporated by reference in their entirety.
  • FIELD OF THE INVENTION
  • The invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Sickle Cell Disease (SCD).
  • SEQUENCE LISTING
  • This application contains a Sequence Listing, which was submitted in ASCII format via EFS-Web, and is hereby incorporated by reference in its entirety. The ASCII copy, created on Jan. 19, 2022, is named SequenceListing.txt and is 3,905 KB in size.
  • BACKGROUND
  • Sickle Cell Disease (SCD), also known as Sickle Cell Anemia (SCA), is a common inherited hematologic disease. It affects 80,000-90,000 people in the United States. It is common in people of African descent and in Hispanic-Americans with the prevalence of SCD being 1 in 500 and 1 in 1,000, respectively.
  • SCD is caused by a mutation in the beta-globin (HBB) gene. HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, G gamma chain. The alpha-globin gene is located on chromosome 16. A point mutation (e.g., GAG→GTG) results in the substitution of valine for glutamic acid at amino acid position 6 in exon 1 of the HBB gene. Beta hemoglobin chains with this mutation are expressed as HbS. The disease is inherited in an autosomal recessive manner, so that only patients with two HbS alleles have SCD. Subjects who have sickle cell trait (are heterozygous for HbS) only display a phenotype if they are severely dehydrated or oxygen deprived.
  • Normal adult hemoglobin (Hb) is composed of a tetramer made from two alpha-globin chains and two beta-globin chains. In SCD, the valine at position 6 of the beta-chain is hydrophobic and causes a change in conformation of the beta-globin protein when it is not bound to oxygen. HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs) found in SCD.
  • Sickle shape RBCs cause multiple manifestations of disease, which include, e.g., anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome. The disease has varous manifestations, e.g., vaso-occlusive crisis, splenic sequestration crisis and anemia. Subjects may also suffer from acute chest crisis and infarcts of extremities, end organs and central nervous system. Treatment includes, e.g., hydration, transfusion and analgesics. Treatment of SCD also includes, e.g., the use of hydroxyurea, supplementation with folic acid, and penicillin prophylaxis during childhood. Bone marrow transplants have been demonstrated to cure SCD.
  • Thus, there remains a need for additional methods and compositions that can be used to treat SCD.
  • SUMMARY OF THE INVENTION
  • Methods and compositions discussed herein, provide for the treatment and prevention of Sickle Cell Disease (SCD), also known as Sickle Cell Anemia (SCA). SCD is an inherited hematologic disease.
  • In healthy individuals, two beta-globin molecules pair with two alpha-globin molecules to form normal hemoglobin (Hb). In SCD, mutations in the beta-globin (HBB) gene, e.g., a point mutation (GAG→GTG) that results in the substitution of valine for glutamic acid at amino acid position 6 of the beta-globin molecule, cause production of sickle hemoglobin (HbS). HbS is more likely to polymerize and leads to the characteristic sickle shaped red blood cells (RBCs). Sickle shaped RBCs give rise to multiple manifestations of disease, such as, anemia, sickle cell crises, vaso-occlusive crises, aplastic crises and acute chest syndrome. Alpha-globin can also pair with fetal hemoglobin (HbF), which significantly moderates the severe anemia and other symptoms of SCD. However, the expression of HbF is negatively regulated by the BCL11A gene product.
  • Methods and compositions disclosed herein provide a number of approaches for treating SCD. As is discussed in more detail below, methods described herein provide for treating SCD by correcting a target position in the HBB gene to provide corrected, or functional, e.g., wild type, beta-globin. Methods and compositions discussed herein can be used to treat or prevent SCD by altering the BCL11A gene (also known as B-cell CLL/lymphoma 11A, BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, HBFQTL5 and ZNF). BCL11A encodes a zinc-finger protein that is involved in the regulation of globin gene expression. By altering the BCL11A gene (e.g., one or both alleles of the BCL11A gene), the levels of gamma globin can be increased. Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating SCD disease phenotypes.
  • In one aspect, methods and compositions discussed herein, provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • Mutations in the HBB gene (also known as beta-globin and CD113t-C) have been shown to cause SCD. Mutations leading to SCD can be described based on their target positions in the HBB gene. In an embodiment, the target position is E6, e.g., E6V, in the HBB gene.
  • “SCD target point position”, as used herein, refers to a target position in the HBB gene, typically a single nucleotide, which, if mutated, can result in a protein having a mutant amino acid and give rise to SCD. In an embodiment, the SCD target position is the target position at which a change can give rise to an E6 mutant protein, e.g., a protein having an E6V substitution.
  • While much of the disclosure herein is presented in the context of the mutation in the HBB gene that gives rise to an E6 mutant protein (e.g., E6V mutant protein), the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a deletion, in the HBB gene that gives rise to SCD.
  • While not wishing to be bound by theory, it is believed that, in an embodiment, a mutation at an SCD target point position in the HBB gene is corrected, e.g., by homology directed repair (HDR), as described herein.
  • In one aspect, methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD, by targeting the BCL11A gene, e.g., coding or non-coding regions of the BCL11A gene. Altering the BCL11A gene herein refers to reducing or eliminating (1) BCL11A gene expression, (2) BCL11A protein function, or (3) the level of BCL11A protein.
  • In an embodiment, the coding region (e.g., an early coding region) of the BCL11A gene is targeted for alteration. In an embodiment, a non-coding sequence (e.g., an enhancer region, a promoter region, an intron, 5′UTR, 3′UTR, or polyadenylation signal) is targeted for alteration.
  • In an embodiment, the method provides an alteration that comprises disrupting the BCL11A gene by the insertion or deletion of one or more nucleotides mediated by Cas9 (e.g., enzymatically active Cas9 (eaCas9), e.g., Cas9 nuclease or Cas9 nickase) as described below. This type of alteration is also referred to as “knocking out” the BCL11A gene.
  • In another embodiment, the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCL11A gene and is mediated by enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described below. This type of alteration is also referred to as “knocking down” the BCL11A gene.
  • In an embodiment, the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD by knocking out one or both alleles of the BCL11A gene. In an embodiment, the coding region (e.g., an early coding region) of the BCL11A gene, is targeted to alter the gene. In an embodiment, a non-coding region of the BCL11A gene (e.g., an enhancer region, a promoter region, an intron, 5′ UTR, 3′UTR, polyadenylation signal) is targeted to alter the gene. In an embodiment, an enhancer (e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer) is targeted to alter the gene. BCL11A erythroid enhancer comprises an approximate 12.4 kb fragment of BCL11A intron2, located between approximate+52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52 kb to TSS+64.4 kb, see FIG. 10 ). It's also referred to herein as chromosome 2 location 60,716,189-60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly). Three deoxyribonuclese I hypersensitive sites (DHSs), TSS+62 kb, TSS+58 kb and TSS+55 kb are located in this region. Deoxyribonuclease I sensitivity is a marker for gene regulatory elements. While not wishing to be bound by theory, it's believed that deleting the ehancer region (e.g., TSS+52 kb to TSS+64.4 kb) may reduce or eliminate BCL11A expression in erythroid precursors which leads to gamma globin derepression while sparing BCL11A expression in nonerythoroid lineages. In an embodiment, the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1-hypersensitivie sites (DHS). In an embodiment, the method provides an alteration that comprises an insertion or deletion of one or more nucleotides. As described herein, in an embodiment, a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9). In an embodiment, a targeted knockout approach alters the BCL11A gene. In an embodiment, a targeted knockout approach reduces or eliminates expression of functional BCL11A gene product. In an embodiment, targeting affects one or both alleles of the BCL11A gene. In an embodiment, an enhancer disruption approach reduces or eliminates expression of functional BCL11A gene product in the erythroid lineage.
  • “SCD target knockout position”, as used herein, refers to a position in the BCL11A gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in reduction or elimination of expression of functional BCL11A gene product. In an embodiment, the position is in the BCL11A coding region, e.g., an early coding region. In an embodiment, the position is in the BCL11A non-coding region, e.g., an enhancer region.
  • In an embodiment, methods and compositions discussed herein, provide for altering (e.g., knocking out) the BCL11A gene. In an embodiment, knocking out the BCL11A gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCL11A gene, or (2) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCL11A gene,
  • In an embodiment, the SCD target knockout position is altered by genome editing using the CRISPR/Cas9 system. The SCD target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the SCD target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCL11A gene.
  • In an embodiment, the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCL11A gene. In an embodiment, a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene. In an embodiment, the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
  • In an embodiment, a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene. In an embodiment, a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule. In an embodiment, a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
  • In an embodiment, a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCL11A gene. In an embodiment, the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule. In an embodiment, the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • In an embodiment, two double strand breaks are introduced to flank the erythroid enhancer at the in the BCL11A gene (one 5′ and the other one 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted deletion of certain elements, such as endogenous splice sites. The breaks, i.e., two double strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • In an embodiment, two sets of breaks (e.g., one double strand break and a pair of single strand breaks) are introduced to flank the erythroid enhancer in the BCL11A gene (one set 5′ and the other set 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the double strand break and the pair of single strand breaks) are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites. The breaks, e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • In an embodiment, two sets of breaks (e.g., two pairs of single strand breaks) are introduced to flank the erythroid enhancer at the SCD target position in the BCL11A gene (one set 5′ and the other set 3′ to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. It is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites. The breaks, e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • In an embodiment, the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent SCD by knocking down one or both alleles of the BCL11A gene. In one embodiment, the coding region of the BCL11A gene, is targeted to alter the gene. In another embodiment, a non-coding region (e.g., an enhancer region, a promoter region, an intron, 5′ UTR, 3′UTR, polyadenylation signal) of the BCL11A gene is targeted to alter the gene. In an embodiment, the promoter region of the BCL11A gene is targeted to knock down the expression of the BCL11A gene. A targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCL11A gene. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • “SCD target knockdown position”, as used herein, refers to a position, e.g., in the BCL11A gene, which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCL11A gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCL11A promoter sequence. In an embodiment, a position in the promoter sequence of the BCL11A gene is targeted by an enzymatically inactive Cas9 (eiCas9) or an eiCas9-fusion protein, as described herein.
  • In an embodiment, one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a SCD target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
  • “SCD target position”, as used herein, refers to any of an SCD target point position, SCD target knockout position, or SCD target knockdown position, as described herein.
  • In one aspect, disclosed herein is a gRNA molecule, e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the HBB gene or BCL11A gene.
  • When two or more gRNAs are used to position two or more cleavage events, e.g., double strand or single strand breaks, in a target nucleic acid, it is contemplated that the two or more cleavage events may be made by the same or different Cas9 proteins. For example, when two gRNAs are used to position two double strand breaks, a single Cas9 nuclease may be used to create both double strand breaks. When two or more gRNAs are used to position two or more single stranded breaks (single strand breaks), a single Cas9 nickase may be used to create the two or more single strand breaks. When two or more gRNAs are used to position at least one double strand break and at least one single strand break, two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
  • In an embodiment, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule. In an embodiment, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • In an embodiment, the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
  • In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D. In an embodiment, the targeting domain is selected from those in Tables 1A-1D. For example, in an embodiment, the targeting domain is:
  • (SEQ ID NO: 387)
    AAGGUGAACGUGGAUGAAGU;
    (SEQ ID NO: 388)
    GUAACGGCAGACUUCUCCUC;
    (SEQ ID NO: 389)
    GUGAACGUGGAUGAAGU;
    or
    (SEQ ID NO: 390)
    ACGGCAGACUUCUCCUC.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 1A-1D.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13D. In an embodiment, the targeting domain is selected from those in Tables 13A-13D. For example, in an embodiment, the targeting domain is:
  • (SEQ ID NO: 6803)
    GGUGCACCUGACUCCUG;
    or
    (SEQ ID NO: 6804)
    GUAACGGCAGACUUCUCCAC.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 13A-13D.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C. In an embodiment, the targeting domain is selected from those in Tables 14A-14C.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 14A-14C.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 24A-24D. In an embodiment, the targeting domain is selected from those in Tables 24A-24D.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 24A-24D.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 25A-25B. In an embodiment, the targeting domain is selected from those in Tables 25A-25B.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 25A-25B.
  • In an embodiment, a point mutation in the HBB gene, e.g., at E6, e.g., E6V, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 26. In an embodiment, the targeting domain is selected from those in Table 26.
  • In an embodiment, when the SCD target point position is E6, e.g., E6V, and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from Table 26. In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2F. In an embodiment, the targeting domain is selected from those in Tables 2A-2F. In another embodiment, the targeting domain is:
  • (SEQ ID NO: 486)
    UGGCAUCCAGGUCACGCCAG;
    (SEQ ID NO: 487)
    GAUGCUUUUUUCAUCUCGAU;
    (SEQ ID NO: 488)
    GCAUCCAAUCCCGUGGAGGU;
    (SEQ ID NO: 489)
    UUUUCAUCUCGAUUGGUGAA;
    (SEQ ID NO: 490)
    CCAGAUGAACUUCCCAUUGG;
    (SEQ ID NO: 491)
    AGGAGGUCAUGAUCCCCUUC;
    (SEQ ID NO: 492)
    CAUCCAGGUCACGCCAG;
    (SEQ ID NO: 493)
    GCUUUUUUCAUCUCGAU;
    (SEQ ID NO: 494)
    UCCAAUCCCGUGGAGGU;
    (SEQ ID NO: 495)
    UCAUCUCGAUUGGUGAA;
    (SEQ ID NO: 496)
    GAUGAACUUCCCAUUGG;
    or
    (SEQ ID NO: 497)
    AGGUCAUGAUCCCCUUC.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 2A-2F.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 4A-4E. In an embodiment, the targeting domain is selected from those in Table 4A-4E. In another embodiment, the targeting domain is:
  • (SEQ ID NO: 3073)
    GAGCUCCAUGUGCAGAACGA;
    (SEQ ID NO: 3074)
    GAGCUCCCAACGGGCCG;
    (SEQ ID NO: 3075)
    GAGUGCAGAAUAUGCCCCGC;
    (SEQ ID NO: 3076)
    GAUAAACAAUCGUCAUCCUC;
    (SEQ ID NO: 3077)
    GAUGCCAACCUCCACGGGAU;
    (SEQ ID NO: 3078)
    GCAGAAUAUGCCCCGCA;
    (SEQ ID NO: 3079)
    GCAUCCAAUCCCGUGGAGGU;
    (SEQ ID NO: 3080)
    GCCAACCUCCACGGGAU;
    (SEQ ID NO: 3081)
    GCUCCCAACGGGCCGUGGUC;
    or
    (SEQ ID NO: 3082)
    GGAGCUCUAAUCCCCACGCC.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 4A-4E.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 5A-5E. In an embodiment, the targeting domain is selected from those in Table 5A-5E.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 5A-5E.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 6A-6B. In an embodiment, the targeting domain is selected from those in Table 6A-6B.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 6A-6B.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 15A-15D. In an embodiment, the targeting domain is selected from those in Table 15A-15D.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 15A-15D.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 16A-16E. In an embodiment, the targeting domain is selected from those in Table 16A-16E.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 16A-16E.
  • In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 17A-17B. In an embodiment, the targeting domain is selected from those in Table 17A-17B.
  • In an embodiment, when the SCD target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 17A-17B.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D. In an embodiment, the targeting domain is selected from those in Tables 7A-7D. In another embodiment, the targeting domain is:
  • (SEQ ID NO: 4835)
    GAAAAUACUUACUGUACUGC;
    (SEQ ID NO: 4836)
    GAAAGCAGUGUAAGGCU;
    (SEQ ID NO: 4837)
    GGCUGUUUUGGAAUGUAGAG;
    or
    (SEQ ID NO: 4838)
    GUGCUACUUAUACAAUUCAC.
  • In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 7A-7D.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8D. In an embodiment, the targeting domain is selected from those in Tables 8A-8D.
  • In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 8A-8D.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 9. In an embodiment, the targeting domain is selected from those in Table 9.
  • In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 9.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21E. In an embodiment, the targeting domain is selected from those in Tables 21A-21E. In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 21A-21E.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E. In an embodiment, the targeting domain is selected from those in Tables 22A-22E. In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 22A-22E.
  • In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23C. In an embodiment, the targeting domain is selected from those in Tables 23A-23C.
  • In an embodiment, when the SCD target knockout position is the non-coding region, e.g., the enhancer region, of the BCL11A gene, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create a deletion, in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Table 23A-23C.
  • In an embodiment, the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene. In an embodiment, the targeting domain is configured to target the promoter region of the BCL11A gene to block transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase. One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3C. In an embodiment, the targeting domain is selected from those in Tables 3A-3C.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, the targeting domain of each guide RNA is selected from one of Tables 3A-3C.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10D. In an embodiment, the targeting domain is selected from those in Tables 10A-10D. In another embodiment, the targeting domain is:
  • (SEQ ID NO: 4981)
    GACGACGGCUCGGUUCACAU;
    (SEQ ID NO: 4982)
    GACGCCAGACGCGGCCCCCG;
    (SEQ ID NO: 4983)
    GCCUUGCUUGCGGCGAGACA;
    (SEQ ID NO: 4984)
    GGCUCCGCGGACGCCAGACG;
    (SEQ ID NO: 4985)
    GACGGCUCGGUUCACAU;
    (SEQ ID NO: 4986)
    GCCGCGUCUGGCGUCCG;
    or
    (SEQ ID NO: 4987)
    GCGGGCGGACGACGGCU.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 10A-10D.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11D. In an embodiment, the targeting domain is selected from those in Tables 11A-11D.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 11A-11D.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from Table 12. In an embodiment, the targeting domain is selected from those in Table 12.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from Table 12.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18C. In an embodiment, the targeting domain is selected from those in Tables 18A-18C.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 18A-18C.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is selected from those in Tables 19A-19E.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 19A-19E.
  • In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is selected from those in Tables 20A-20C.
  • In an embodiment, when the SCD target knockdown position is the BCL11A promoter region and more than one gRNA is used to position an eiCas9 or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 20A-20C.
  • In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence selected from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, the targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • In an embodiment, the targeting domain which is complementary with the BCL11A gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises 16 nucleotides.
  • In an embodiment, the targeting domain comprises 17 nucleotides.
  • In an embodiment, the targeting domain comprises 18 nucleotides.
  • In an embodiment, the targeting domain comprises 19 nucleotides.
  • In an embodiment, the targeting domain comprises 20 nucleotides.
  • In an embodiment, the targeting domain comprises 21 nucleotides.
  • In an embodiment, the targeting domain comprises 22 nucleotides.
  • In an embodiment, the targeting domain comprises 23 nucleotides.
  • In an embodiment, the targeting domain comprises 24 nucleotides.
  • In an embodiment, the targeting domain comprises 25 nucleotides.
  • In an embodiment, the targeting domain comprises 26 nucleotides.
  • In an embodiment, the gRNA, e.g., a gRNA comprising a targeting domain, which is complementary with the HBB gene or BCL11A gene, is a modular gRNA. In another embodiment, the gRNA is a unimolecular or chimeric gRNA.
  • HBB gRNA as described herein may comprise from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
  • In an embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • A cleavage event, e.g., a double strand or single strand break, is generated by a Cas9 molecule. The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule). Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Krüppel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • In an embodiment, the eaCas9 molecule catalyzes a double strand break.
  • In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In this case, the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
  • In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • In another aspect, disclosed herein is a nucleic acid, e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with an SCD target position, in the HBB gene or BCL11A gene as disclosed herein.
  • In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of the an SCD target position in the HBB gene or BCL11A gene.
  • In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • In an embodiment, the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA. In another embodiment, the nucleic acid encodes a chimeric gRNA. The nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length. In one embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises 16 nucleotides.
  • In an embodiment, the targeting domain comprises 17 nucleotides.
  • In an embodiment, the targeting domain comprises 18 nucleotides.
  • In an embodiment, the targeting domain comprises 19 nucleotides.
  • In an embodiment, the targeting domain comprises 20 nucleotides.
  • In an embodiment, the targeting domain comprises 21 nucleotides.
  • In an embodiment, the targeting domain comprises 22 nucleotides.
  • In an embodiment, the targeting domain comprises 23 nucleotides.
  • In an embodiment, the targeting domain comprises 24 nucleotides.
  • In an embodiment, the targeting domain comprises 25 nucleotides.
  • In an embodiment, the targeting domain comprises 26 nucleotides.
  • In an embodiment, a nucleic acid encodes a gRNA comprising from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
  • In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
  • The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule). Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Krüppel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further comprises (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene or BCL11A gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene or BCL11A gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene or BCL11A gene.
  • In an embodiment, a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • In an embodiment, a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
  • In an embodiment, the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • In an embodiment, a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to an SCD target position in the HBB gene or BCL11A gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of an SCD target position in the HBB gene or BCL11A gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
  • In an embodiment, the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to an SCD knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • In an embodiment, the nucleic acid encodes a second gRNA molecule. The second gRNA is selected to target the same SCD target position as the first gRNA molecule. Optionally, the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule. The third gRNA molecule and the fourth gRNA molecule are selected to target the same SCD target position as the first and/or second gRNA molecules.
  • In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In an embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. In a further embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • In an embodiment, the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA. In another embodiment, the nucleic acid encoding a second gRNA is a chimeric gRNA. In another embodiment, when a nucleic acid encodes a third or fourth gRNA, the third and/or fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any combination of modular or chimeric gRNAs may be used.
  • A nucleic acid may encode a second, a third, and/or a fourth gRNA comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises 16 nucleotides.
  • In an embodiment, the targeting domain comprises 17 nucleotides.
  • In an embodiment, the targeting domain comprises 18 nucleotides.
  • In an embodiment, the targeting domain comprises 19 nucleotides.
  • In an embodiment, the targeting domain comprises 20 nucleotides.
  • In an embodiment, the targeting domain comprises 21 nucleotides.
  • In an embodiment, the targeting domain comprises 22 nucleotides.
  • In an embodiment, the targeting domain comprises 23 nucleotides.
  • In an embodiment, the targeting domain comprises 24 nucleotides.
  • In an embodiment, the targeting domain comprises 25 nucleotides.
  • In an embodiment, the targeting domain comprises 26 nucleotides.
  • In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising from 5′ to 3′: a targeting domain (comprising a “core domain”, and optionally a “secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
  • In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, when the HBB gene is corrected, e.g., by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the HBB gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the HBB gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the HBB gene; and further may comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used).
  • In an embodiment, a mutation in the HBB gene is corrected, e.g., by HDR, using an exogenously provided template nucleic acid.
  • In an embodiment, the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In an embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
  • The template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 27. In an embodiment, the template nucleic acid comprises a 5′ homology arm, e.g., a 5′ homology arm from Table 27. In another embodiment, the template nucleic acid comprises a 3′ homology arm, e.g., a 3′ homology arm from Table 27.
  • In another embodiment, a mutation in the HBB gene is corrected, e.g., by HDR, without using an exogenously provided template nucleic acid. While not wishing to be bound by theory, it is believed that an endogenous region of homology can mediate HDR-based correction. In an embodiment, alteration of the target sequence occurs by HDR with an endogenous genomic donor sequence. In an embodiment, the endogenous genomic donor sequence is located on the same chromosome as the target sequence. In another embodiment, the endogenous genomic donor sequence is located on a different chromosome from the target sequence. In an embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with an endogenous genomic donor sequence include, e.g., a point mutation at E6, e.g., E6V.
  • As described above, a nucleic acid may comprise (a) a sequence encoding a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, and (b) a sequence encoding a Cas9 molecule.
  • In an embodiment, (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector. Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
  • In another embodiment, (a) is present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) is present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecules may be AAV vectors.
  • In another embodiment, the nucleic acid may further comprise (c) a sequence that encodes a second, third and/or fourth gRNA molecule as described herein. In an embodiment, the nucleic acid comprises (a), (b) and (c). Each of (a) and (c) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
  • In another embodiment, (a) and (c) are on different vectors. For example, (a) may be present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (c) may be present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. In an embodiment, the first and second nucleic acid molecules are AAV vectors.
  • In another embodiment, each of (a), (b), and (c) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, one of (a), (b), and (c) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
  • In an embodiment, (a) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, a first AAV vector; and (b) and (c) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
  • In another embodiment, (b) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (a) and (c) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
  • In another embodiment, (c) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
  • In another embodiment, each of (a), (b) and (c) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector. For example, (a) may be on a first nucleic acid molecule, (b) on a second nucleic acid molecule, and (c) on a third nucleic acid molecule. The first, second and third nucleic acid molecule may be AAV vectors.
  • In another embodiment, when a third and/or fourth gRNA molecule are present, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
  • In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
  • In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In further embodiments, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
  • The nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein. The nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein. The promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
  • The nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
  • In another aspect, disclosed herein is a composition comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the HBB gene or BCL11A gene, as described herein. The composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein. A composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein. A composition of (a), (b) and (c) may further comprise (d) a template nucleic acid (in an embodiment where an exogenous template is used). In an embodiment, the composition is a pharmaceutical composition. The Compositions described herein, e.g., pharmaceutical compositions described herein, can be used in treating SCD in a subject, e.g., in accordance with a method disclosed herein.
  • In another aspect, disclosed herein is a method of altering a cell, e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets HBB gene or BCL11A gene, e.g., a gRNA; and optionally, (d) a template nucleic acid, as described herein.
  • In an embodiment, the method comprises contacting said cell with (a) and (b).
  • In an embodiment, the method comprises contacting said cell with (a), (b), and (c).
  • In an embodiment, the method comprises contacting said cell with (a), (b), (c) and (d).
  • In an embodiment, the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the cell.
  • The gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • In an embodiment, the method comprises contacting a cell from a subject suffering from or likely to develop SCD. The cell may be from a subject having a mutation at an SCD target position in the HBB gene or a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • In an embodiment, the cell being contacted in the disclosed method is an erythroid cell. The contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In another embodiment, the contacting step may be performed in vivo.
  • In an embodiment, the method of altering a cell as described herein comprises acquiring knowledge of the sequence at an SCD target position in said cell, prior to the contacting step. Acquiring knowledge of the sequence at an SCD target position in the cell may be by sequencing the HBB gene or BCL11A gene, or a portion of the HBB gene or BCL11A gene.
  • In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • In an embodiment, contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector.
  • In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes (a) and optionally a second, third and/or fourth gRNA of (c).
  • In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
  • In an embodiment, contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • In another aspect, disclosed herein is a method of treating or preventing a subject suffering from or likely to develop SCD, e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
  • (a) a gRNA that targets the HBB gene or BCL11A gene, e.g., a gRNA disclosed herein;
  • (b) a Cas9 molecule, e.g., a Cas9 molecule disclosed herein; and
  • optionally, (c)(i) a second gRNA that targets the HBB gene or BCL11A gene, e.g., a second gRNA disclosed herein, and
  • further optionally, (c)(ii) a third gRNA, and still further optionally, (c)(iii) a fourth gRNA that target the HBB gene or BCL11A gene, e.g., a third and fourth gRNA disclosed herein.
  • The method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid disclosed herein.
  • In an embodiment, a template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject. In an embodiment, the gRNA targets the HBB gene and no exogenous template nucleic acid is contacted with the subject (or a cell from the subject).
  • In an embodiment, contacting comprises contacting with (a) and (b).
  • In an embodiment, contacting comprises contacting with (a), (b), and (c)(i).
  • In an embodiment, contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
  • In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
  • In an embodiment, contacting comprises contacting with (a), (b), (c)(i) and (d).
  • In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (d).
  • In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • The gRNA of (a) or (c) (e.g., (c)(i), (c)(ii), or (c)(iii) may be selected from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • In an embodiment, the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject.
  • In an embodiment, the method comprises acquiring knowledge of the sequence (e.g., a mutation) of an SCD target position in said subject by sequencing the HBB gene or BCL11A gene or a portion of the HBB gene or BCL11A gene.
  • In an embodiment, the method comprises correcting a mutation at an SCD target position in the HBB gene.
  • In an embodiment, the method comprises correcting a mutation at an SCD target position in the HBB gene by HDR.
  • In an embodiment, the method comprises introducing a mutation at an SCD target position in the BCL11A gene.
  • In an embodiment, the method comprises introducing a mutation at an SCD target position in the BCL11A gene by NHEJ.
  • When the method comprises correcting the mutation at an SCD target position by HDR, a Cas9 of (b), at least one guide RNA, e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
  • In an embodiment, a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
  • In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, the cell of the subject is contacted in vivo by intravenous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • In an embodiment, contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
  • When the method comprises (1) introducing a mutation at an SCD target position by NHEJ or (2) knocking down expression of the BCL11A gene by targeting the promoter region, a Cas9 of (b) and at least one guide RNA, e.g., a guide RNA of (a) are included in the contacting step.
  • In an embodiment, a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
  • In an embodiment, a populations of cells from a subject is contacted ex vivo with (a), (b) and optionally (c) to correct the E6V mutation in the HBB gene and a second population of cells from the subject is contacted ex vivo with (a), (b) and optionally (c) to introduce a mutation in the BCL11A gene to knockout the BCL11A gene. A mixture of the two cell populations may be returned to the subject's body to treat or prevent SCD.
  • In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intravenous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intramuscular delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by subcutaneous delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by intra-bone marrow (IBM) delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • In an embodiment, contacting comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second, third and/or fourth gRNA of (c), as an RNA.
  • In an embodiment, contacting comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second, third and/or fourth gRNA of (c), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • In another aspect, disclosed herein is a reaction mixture comprising a gRNA, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop SCD, or a subject having a mutation at an SCD target position in the HBB gene, or a cell from a subject which would benefit from having a mutation at an SCD target position in the BCL11A gene.
  • In another aspect, disclosed herein is a kit comprising, (a) gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
  • (b) a Cas9 molecule, e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
  • (c)(i) a second gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
  • (c)(ii) a third gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
  • (c)(iii) a fourth gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
  • (d) a template nucleic acid (in an embodiment where an exogenous template is used), e.g., a template nucleic acid described herein.
  • In an embodiment, the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • In an aspect, the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject. In an embodiment, the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule. In an embodiment, the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule. In an embodiment, the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage. For example, the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA. While not wishing to be bound by theory, it is believed that altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
  • The compositions, reaction mixtures and kits, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
  • Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
  • Headings, including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
  • Other features and advantages of the invention will be apparent from the detailed description, drawings, and from the claims.
  • BRIEF DESCRIPTION OF THE DRAWINGS
  • FIGS. 1A-1I are representations of several exemplary gRNAs.
  • FIG. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
  • FIG. 1B depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
  • FIG. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
  • FIG. 1D depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
  • FIG. 1E depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
  • FIG. 1F depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
  • FIG. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S. thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
  • FIGS. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules.
  • FIG. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
  • FIG. 11 shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
  • FIGS. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737). The N-terminal RuvC-like domain is boxed and indicated with a “Y”. The other two RuvC-like domains are boxed and indicated with a “B”. The HNH-like domain is boxed and indicated by a “G”. Sm: S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4). Motif: this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; “*” indicates any amino acid found in the corresponding position of any of the four sequences; and “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • FIGS. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance). The last line of FIG. 3B identifies 4 highly conserved residues.
  • FIGS. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance). The last line of FIG. 4B identifies 3 highly conserved residues.
  • FIGS. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of FIG. 5C identifies conserved residues.
  • FIGS. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance). The last line of FIG. 6B identifies 3 highly conserved residues.
  • FIGS. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (N. meningitidis). The N-terminal RuvC-like domain is boxed and indicated with a “Y”. The other two RuvC-like domains are boxed and indicated with a “B”. The HNH-like domain is boxed and indicated with a “G”. Sp: S. pyogenes; Nm: N. meningitidis. Motif: this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; “*” indicates any amino acid found in the corresponding position of any of the two sequences; “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and “-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • FIG. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an “R” is an SV40 NLS; sequence indicated as “G” is an HA tag; and sequence indicated by an “O” is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF).
  • FIGS. 9A and 9B are schematic representations of the domain organization of S. pyogenes Cas 9. FIG. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes). FIG. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
  • FIG. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCL11A intron 2. Three erythroid DHSs are labeled as distance in kilobases from BCL11A TSS (+62, +58 and +55). BCL11A transcription is from right to left.
  • FIG. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCL11A locus.
  • FIGS. 12A-12B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCL11A-2983W and BCL11A-2981W.
  • FIG. 12A depicts schematic of DNA sequence recognized by BCL11A-2983W and BCL11A-2981W, which flanks the putative erythroid enhancer elements.
  • FIG. 12B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • FIGS. 13A-13B depicts detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
  • FIG. 13A depicts Schematic of DNA sequence recognized by BCL11A-2995W and BCL11A-2984W, which flanks the putative erythroid enhancer elements.
  • FIG. 13B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • FIG. 14 depicts a scheme of the pair 8/15 of gRNAs surrounding the sickle mutation in combination with a Cas9 nickase (D10A or N863A). The nickases are shown as the grey ovals.
  • FIG. 15 depicts the percentages of total editing event after a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A preprentation of at least three independent experiments for each condition is shown.
  • FIG. 16A depicts the frequency of deletions a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A representation of at least 3 independent experiments for each condition is shown.
  • FIG. 16B depicts the frequency distribution of the length of deletions using a wildtype Cas9 and gRNA 8 (similar results have been obtained with gRNA 15).
  • FIG. 16C depicts the frequency distribution of the length of deletions using a Cas9 nickase (D10A) with gRNAs 8/15 (similar results have been obtained using Cas9 N863A).
  • FIG. 17A depicts the frequency of gene conversion a wildtype Cas9 or a Cas9 nickase (D10A or N863A).
  • FIG. 17B shows a scheme representing the region of similarity between the HBB and HBD loci.
  • FIG. 18 depicts the frequency of different lengths of HBD sequences that were incorporated into the HBB locus.
  • FIG. 19A depicts the frequency of insertions using a wildtype Cas9 or a Cas9 nickase (D10A or N863A). A representation of at least three independent experiments for each condition is shown.
  • FIG. 19B depicts examples of common reads observed in U2OS cells electroporated with plasmid encoding Cas9 N863 and gRNA 8/15 pair. The HBB reference is shown on the top.
  • FIG. 20A is a schematic representation of the donor template.
  • FIG. 20B depicts the frequency of HDR using a wildtype Cas9 or a Cas9 nickase (D10A or N863A).
  • FIG. 20C depicts different forms of nonors and there contribution to HDR.
  • FIG. 21 depicts genome editing of the HBB locus in bone marrow leukemia K562 hematopoietic cells after electroporation of Cas9 protein complexed to HBB gRNAs 8 and 15 (RNP) or Cas9 mRNA co-delivered with HBB gRNAs 8 and 15 (RNA).
  • DETAILED DESCRIPTION Definitions
  • “Alt-HDR” or “alternative HDR”, or alternative homology-directed repair, as used herein, refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid). Alt-HDR is distinct from canonical HDR in that the process utilizes different pathways from canonical HDR, and can be inhibited by the canonical HDR mediators, RAD51 and BRCA2. Also, alt-HDR uses a single-stranded or nicked homologous nucleic acid for repair of the break.
  • “Canonical HDR”, or canonical homology-directed repair, as used herein, refers to the process of repairing DNA damage using a homologous nucleic acid (e.g., an endogenous homologous sequence, e.g., a sister chromatid, or an exogenous nucleic acid, e.g., a template nucleic acid). Canonical HDR typically acts when there has been significant resection at the double strand break, forming at least one single stranded portion of DNA. In a normal cell, HDR typically involves a series of steps such as recognition of the break, stabilization of the break, resection, stabilization of single stranded DNA, formation of a DNA crossover intermediate, resolution of the crossover intermediate, and ligation. The process requires RAD51 and BRCA2, and the homologous nucleic acid is typically double-stranded.
  • Unless indicated otherwise, the term “HDR” as used herein encompasses canonical HDR and alt-HDR.
  • “Domain”, as used herein, is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
  • Calculations of homology or sequence identity between two sequences (the terms are used interchangeably herein) are performed as follows. The sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes). The optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5. The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position. The percent identity between the two sequences is a function of the number of identical positions shared by the sequences.
  • “Governing gRNA molecule”, as used herein, refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence. In an embodiment, a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the HBB or BCL11A gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b). In an embodiment, a nucleic acid molecule that encodes a CRISPR/Cas component, e.g., that encodes a Cas9 molecule or a target gene gRNA, comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component. In an embodiment, the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the HBB or BCL11A gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule. In an embodiment, the governing gRNA, e.g., a Cas9-targeting governing gRNA molecule, or a target gene gRNA-targeting governing gRNA molecule, limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting. In an embodiment, a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a governing gRNA reduces off-target or other unwanted activity. In an embodiment, a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
  • “Modulator”, as used herein, refers to an entity, e.g., a drug, that can alter the activity (e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence. In an embodiment, modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non-covalent bond, e.g., the attachment of a moiety, to the subject molecule. In an embodiment, a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule. A modulator can increase, decrease, initiate, or eliminate a subject activity.
  • “Large molecule”, as used herein, refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologics, and carbohydrates.
  • A “polypeptide”, as used herein, refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
  • “Non-homologous end joining” or “NHEJ”, as used herein, refers to ligation mediated repair and/or non-template mediated repair including canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
  • A “reference molecule”, e.g., a reference Cas9 molecule or reference gRNA, as used herein, refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared. For example, a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule. Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared. In an embodiment, the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
  • “Replacement”, or “replaced”, as used herein with reference to a modification of a molecule does not require a process limitation but merely indicates that the replacement entity is present.
  • “Small molecule”, as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
  • “Subject”, as used herein, may mean either a human or non-human animal. The term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats). In an embodiment, the subject is a human. In another embodiment, the subject is poultry.
  • “Treat”, “treating” and “treatment”, as used herein, mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
  • “Prevent”, “preventing” and “prevention”, as used herein, means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
  • “X” as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
  • Methods of Repairing Mutation(s) in the HBB Gene
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR. In this approach, mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells. The method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • In an embodiment, one HBB allele is repaired in the subject. In another embodiment, both HBB alleles are repaired in the subject. In either situation, the subject can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • In one aspect, methods and compositions discussed herein, provide for the correction of the underlying genetic cause of SCD, e.g., the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene.
  • In an embodiment, the method provides for the correction of a mutation at a target position in the HBB gene, e.g., correction of a mutation at amino acid position 6, e.g., an E6V substitution in the HBB gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V.
  • In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration in the HBB gene, e.g., an alternation associated with HDR. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • In an embodiment, a second, third and/or fourth gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to (e.g., either 5′ or 3′ to) the target position in the HBB gene, e.g., E6V to allow correction, e.g., an alteration associated with HDR in the HBB gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a the target position in the HBB gene, e.g., E6V. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the target position in the HBB gene, e.g., E6V.
  • In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second, third and/or fourth gRNA molecule, as discussed below. For example, The targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in an alteration of the target position in the HBB gene, e.g., E6V. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second, third and/or fourth gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
  • In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the target position in the HBB gene, e.g., E6V, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position in the HBB gene, e.g., E6V.
  • In an embodiment, a mutation in the HBB gene, e.g., E6V is corrected using an exogenously provided template nucleic acid, e.g., by HDR. In another embodiment, a mutation in the HBB gene, e.g., E6V is corrected without using an exogenously provided template nucleic acid, e.g., by HDR. In an embodiment, alteration of the target sequence occurs with an endogenous genomic donor sequence, e.g., by HDR. In an embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. In an embodiment, a mutation in the HBB gene, e.g., E6V is corrected by an endogenous genomic donor sequence (e.g, an HBD gene). In an embodiment, an eaCas9 molecule, e.g., an eaCas9 molecule described herein, is used. In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an HNH-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at D10 (e.g., D10A). In an embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase. In an embodiment, the eaCas9 molecule comprises a mutation at H840 (e.g., H840A) or N863 (e.g., N863A).
  • Methods of Altering BCL11A
  • One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression. One such gene is BCL11A. It plays a role in the regulation of γ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of γ globin expression. The BCL11A gene product is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in 7 globin expression. In addition, it appears that the splicing of the BCL11A mRNA is developmentally regulated. In embryonic cells, it appears that the shorter BCL11A mRNA variants, known as BCL11A-S and BCL11A-XS are primary expressed, while in adult cells, the longer BCL11A-L and BCL11A-XL mRNA variants are predominantly expressed. See, Sankaran et al (2008) Science 322 p. 1839. The BCL11A protein appears to interact with the β globin locus to alter its conformation and thus its expression at different developmental stages. Thus, if BCL11A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of γ globin and HbF production.
  • Disclosed herein are methods for altering the SCD target position in the BCL11A gene. Altering the SCD target position is achieved, e.g., by:
  • (1) knocking out the BCL11A gene:
      • (a) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCL11A gene, or
      • (b) deletion (e.g., NHEJ-mediated deletion) of a genomic sequence including the erythroid enhancer of the BCL11A gene, or
  • (2) knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
  • All approaches give rise to alteration of the BCL11A gene.
  • In one embodiment, methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCL11A gene. In another embodiment, methods described herein introduce two or more breaks to flank the erythroid enhancer of SCD target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer. In another embodiment, methods described herein comprises knocking down the BCL11A gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of SCD target knockdown position. All methods described herein result in alteration of the BCL11A gene.
  • NHEJ-Mediated Introduction of an Indel in Close Proximity to or within the Early Coding Region of the SCD Knockout Position
  • In an embodiment, the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the SCD target knockout position (e.g., the early coding region) of the BCL11A gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5′ or 3′ to) the early coding region of the SCD target knockout position, such that the break-induced indel could be reasonably expected to span the SCD target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the SCD target knockout position.
  • In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a SCD target knockout position. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of a SCD target knockout position in the BCL11A gene.
  • In an embodiment, a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a SCD target knockout position in the BCL11A gene. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on one side, e.g., upstream or downstream, of a nucleotide of a SCD target knockout position in the BCL11A gene.
  • In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, The targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCL11A gene. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
  • In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a SCD target knockout position in the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene.
  • NHEJ-Mediated Deletion of the Erythroid Enhancer at the SCD Target Position
  • In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two double strand breaks-one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first double strand break is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second double strand break is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ). In an embodiment, the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • The first double strand break may be positioned as follows:
      • (1) upstream of the 5′ end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb), and the second double strand break to be paired with the first double strand break may be positioned as follows:
      • (1) downstream the 3′ end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb).
  • For example, the first double strand break may be positioned in the BCL11A gene:
  • (1) between TSS+0.75 kb to TSS+10 kb,
  • (2) between TSS+10 kb to TSS+20 kb,
  • (3) between TSS+20 kb to TSS+30 kb,
  • (4) between TSS+30 kb to TSS+40 kb,
  • (5) between TSS+40 kb to TSS+45 kb,
  • (6) between TSS+45 kb to TSS+47.5 kb,
  • (7) between TSS+47.5 kb to TSS+50 kb,
  • (8) between TSS+50 kb to TSS+51 kb,
  • (9) between TSS+51 kb to TSS+51.1 kb,
  • (10) between TSS+51.1 kb to TSS+51.2 kb,
  • (11) between TSS+51.2 kb to TSS+51.3 kb,
  • (12) between TSS+51.3 kb to TSS+51.4 kb,
  • (13) between TSS+51.4 kb to TSS+51.5 kb,
  • (14) between TSS+51.5 kb to TSS+51.6 kb,
  • (15) between TSS+51.6 kb to TSS+51.7 kb,
  • (16) between TSS+51.7 kb to TSS+51.8 kb,
  • (17) between TSS+51.8 kb to TSS+51.9 kb,
  • (18) between TSS+51.9 kb to TSS+52 kb,
  • (19) between TSS+52 kb to TSS+53 kb,
  • (20) between TSS+53 kb to TSS+54 kb,
  • (21) between TSS+54 kb to TSS+55 kb,
  • (22) between TSS+55 kb to TSS+56 kb,
  • (23) between TSS+56 kb to TSS+57 kb,
  • (24) between TSS+57 kb to TSS+58 kb,
  • (25) between TSS+58 kb to TSS+59 kb,
  • (26) between TSS+59 kb to TSS+60 kb,
  • (27) between TSS+60 kb to TSS+61 kb,
  • (28) between TSS+61 kb to TSS+62 kb,
  • (29) between TSS+62 kb to TSS+63 kb,
  • (30) between TSS+63 kb to TSS+64 kb, or
  • (31) between TSS+64 kb to TSS+64.4 kb,
  • and the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
  • (1) between TSS+52 kb to TSS+53 kb,
  • (2) between TSS+53 kb to TSS+54 kb,
  • (3) between TSS+54 kb to TSS+55 kb,
  • (4) between TSS+55 kb to TSS+56 kb,
  • (5) between TSS+56 kb to TSS+57 kb,
  • (6) between TSS+57 kb to TSS+58 kb,
  • (7) between TSS+58 kb to TSS+59 kb,
  • (8) between TSS+59 kb to TSS+60 kb,
  • (9) between TSS+60 kb to TSS+61 kb,
  • (10) between TSS+61 kb to TSS+62 kb,
  • (11) between TSS+62 kb to TSS+63 kb,
  • (12) between TSS+63 kb to TSS+64 kb,
  • (13) between TSS+64 kb to TSS+64.4 kb,
  • (14) between TSS+64.4 kb to TSS+65 kb,
  • (15) between TSS+65 kb to TSS+65.1 kb,
  • (16) between TSS+65.1 kb to TSS+65.2 kb,
  • (17) between TSS+65.2 kb to TSS+65.3 kb,
  • (18) between TSS+65.3 kb to TSS+65.4 kb,
  • (19) between TSS+65.4 kb to TSS+65.5 kb,
  • (20) between TSS+65.5 kb to TSS+65.7 kb,
  • (21) between TSS+65.7 kb to TSS+65.8 kb,
  • (22) between TSS+65.8 kb to TSS+65.9 kb,
  • (23) between TSS+65.9 kb to TSS+66 kb,
  • (24) between TSS+66 kb to TSS+67 kb,
  • (25) between TSS+67 kb to TSS+68 kb,
  • (26) between TSS+68 kb to TSS+69 kb,
  • (27) between TSS+69 kb to TSS+70 kb,
  • (28) between TSS+70 kb to TSS+75 kb,
  • (29) between TSS+75 kb to TSS+80 kb, or
  • (30) between TSS+80 kb to TSS+84.4 kb.
  • While not wishing to be bound by theory, it is believed that the two double strand breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)—one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ). In an embodiment, the two sets of breaks (either the double strand break or the pair of single strand breaks) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • The first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
      • (1) upstream of the 5′ end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb),
        and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
      • (1) downstream the 3′ end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb).
  • For example, the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • (1) between TSS+0.75 kb to TSS+10 kb,
  • (2) between TSS+10 kb to TSS+20 kb,
  • (3) between TSS+20 kb to TSS+30 kb,
  • (4) between TSS+30 kb to TSS+40 kb,
  • (5) between TSS+40 kb to TSS+45 kb,
  • (6) between TSS+45 kb to TSS+47.5 kb,
  • (7) between TSS+47.5 kb to TSS+50 kb,
  • (8) between TSS+50 kb to TSS+51 kb,
  • (9) between TSS+51 kb to TSS+51.1 kb,
  • (10) between TSS+51.1 kb to TSS+51.2 kb,
  • (11) between TSS+51.2 kb to TSS+51.3 kb,
  • (12) between TSS+51.3 kb to TSS+51.4 kb,
  • (13) between TSS+51.4 kb to TSS+51.5 kb,
  • (14) between TSS+51.5 kb to TSS+51.6 kb,
  • (15) between TSS+51.6 kb to TSS+51.7 kb,
  • (16) between TSS+51.7 kb to TSS+51.8 kb,
  • (17) between TSS+51.8 kb to TSS+51.9 kb,
  • (18) between TSS+51.9 kb to TSS+52 kb,
  • (19) between TSS+52 kb to TSS+53 kb,
  • (20) between TSS+53 kb to TSS+54 kb,
  • (21) between TSS+54 kb to TSS+55 kb,
  • (22) between TSS+55 kb to TSS+56 kb,
  • (23) between TSS+56 kb to TSS+57 kb,
  • (24) between TSS+57 kb to TSS+58 kb,
  • (25) between TSS+58 kb to TSS+59 kb,
  • (26) between TSS+59 kb to TSS+60 kb,
  • (27) between TSS+60 kb to TSS+61 kb,
  • (28) between TSS+61 kb to TSS+62 kb,
  • (29) between TSS+62 kb to TSS+63 kb,
  • (30) between TSS+63 kb to TSS+64 kb, or
  • (31) between TSS+64 kb to TSS+64.4 kb,
  • and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • (1) between TSS+52 kb to TSS+53 kb,
  • (2) between TSS+53 kb to TSS+54 kb,
  • (3) between TSS+54 kb to TSS+55 kb,
  • (4) between TSS+55 kb to TSS+56 kb,
  • (5) between TSS+56 kb to TSS+57 kb,
  • (6) between TSS+57 kb to TSS+58 kb,
  • (7) between TSS+58 kb to TSS+59 kb,
  • (8) between TSS+59 kb to TSS+60 kb,
  • (9) between TSS+60 kb to TSS+61 kb,
  • (10) between TSS+61 kb to TSS+62 kb,
  • (11) between TSS+62 kb to TSS+63 kb,
  • (12) between TSS+63 kb to TSS+64 kb,
  • (13) between TSS+64 kb to TSS+64.4 kb,
  • (14) between TSS+64.4 kb to TSS+65 kb,
  • (15) between TSS+65 kb to TSS+65.1 kb,
  • (16) between TSS+65.1 kb to TSS+65.2 kb,
  • (17) between TSS+65.2 kb to TSS+65.3 kb,
  • (18) between TSS+65.3 kb to TSS+65.4 kb,
  • (19) between TSS+65.4 kb to TSS+65.5 kb,
  • (20) between TSS+65.5 kb to TSS+65.7 kb,
  • (21) between TSS+65.7 kb to TSS+65.8 kb,
  • (22) between TSS+65.8 kb to TSS+65.9 kb,
  • (23) between TSS+65.9 kb to TSS+66 kb,
  • (24) between TSS+66 kb to TSS+67 kb,
  • (25) between TSS+67 kb to TSS+68 kb,
  • (26) between TSS+68 kb to TSS+69 kb,
  • (27) between TSS+69 kb to TSS+70 kb,
  • (28) between TSS+70 kb to TSS+75 kb,
  • (29) between TSS+75 kb to TSS+80 kb, or
  • (30) between TSS+80 kb to TSS+84.4 kb.
  • While not wishing to be bound by theory, it is believed that the two sets of breaks (either the double strand break or the pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)-one 5′ and the other 3′ to (i.e., flanking) the SCD target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the SCD target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the erythroid enhancer within intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the erythroid enhancer within intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb) (see FIG. 10 ). In an embodiment, the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • The first pair of single strand breaks may be positioned as follows:
      • (1) upstream of the 5′ end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75 kb to TSS+52.0 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb),
        and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned as follows:
      • (1) downstream the 3′ end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4 kb to TSS+84.7 kb), or
      • (2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0 kb to TSS+64.4 kb).
  • For example, the pair of single strand breaks may be positioned in the BCL11A gene:
  • (1) between TSS+0.75 kb to TSS+10 kb,
  • (2) between TSS+10 kb to TSS+20 kb,
  • (3) between TSS+20 kb to TSS+30 kb,
  • (4) between TSS+30 kb to TSS+40 kb,
  • (5) between TSS+40 kb to TSS+45 kb,
  • (6) between TSS+45 kb to TSS+47.5 kb,
  • (7) between TSS+47.5 kb to TSS+50 kb,
  • (8) between TSS+50 kb to TSS+51 kb,
  • (9) between TSS+51 kb to TSS+51.1 kb,
  • (10) between TSS+51.1 kb to TSS+51.2 kb,
  • (11) between TSS+51.2 kb to TSS+51.3 kb,
  • (12) between TSS+51.3 kb to TSS+51.4 kb,
  • (13) between TSS+51.4 kb to TSS+51.5 kb,
  • (14) between TSS+51.5 kb to TSS+51.6 kb,
  • (15) between TSS+51.6 kb to TSS+51.7 kb,
  • (16) between TSS+51.7 kb to TSS+51.8 kb,
  • (17) between TSS+51.8 kb to TSS+51.9 kb,
  • (18) between TSS+51.9 kb to TSS+52 kb,
  • (19) between TSS+52 kb to TSS+53 kb,
  • (20) between TSS+53 kb to TSS+54 kb,
  • (21) between TSS+54 kb to TSS+55 kb,
  • (22) between TSS+55 kb to TSS+56 kb,
  • (23) between TSS+56 kb to TSS+57 kb,
  • (24) between TSS+57 kb to TSS+58 kb,
  • (25) between TSS+58 kb to TSS+59 kb,
  • (26) between TSS+59 kb to TSS+60 kb,
  • (27) between TSS+60 kb to TSS+61 kb,
  • (28) between TSS+61 kb to TSS+62 kb,
  • (29) between TSS+62 kb to TSS+63 kb,
  • (30) between TSS+63 kb to TSS+64 kb, or
  • (31) between TSS+64 kb to TSS+64.4 kb,
  • and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
  • (1) between TSS+52 kb to TSS+53 kb,
  • (2) between TSS+53 kb to TSS+54 kb,
  • (3) between TSS+54 kb to TSS+55 kb,
  • (4) between TSS+55 kb to TSS+56 kb,
  • (5) between TSS+56 kb to TSS+57 kb,
  • (6) between TSS+57 kb to TSS+58 kb,
  • (7) between TSS+58 kb to TSS+59 kb,
  • (8) between TSS+59 kb to TSS+60 kb,
  • (9) between TSS+60 kb to TSS+61 kb,
  • (10) between TSS+61 kb to TSS+62 kb,
  • (11) between TSS+62 kb to TSS+63 kb,
  • (12) between TSS+63 kb to TSS+64 kb,
  • (13) between TSS+64 kb to TSS+64.4 kb,
  • (14) between TSS+64.4 kb to TSS+65 kb,
  • (15) between TSS+65 kb to TSS+65.1 kb,
  • (16) between TSS+65.1 kb to TSS+65.2 kb,
  • (17) between TSS+65.2 kb to TSS+65.3 kb,
  • (18) between TSS+65.3 kb to TSS+65.4 kb,
  • (19) between TSS+65.4 kb to TSS+65.5 kb,
  • (20) between TSS+65.5 kb to TSS+65.7 kb,
  • (21) between TSS+65.7 kb to TSS+65.8 kb,
  • (22) between TSS+65.8 kb to TSS+65.9 kb,
  • (23) between TSS+65.9 kb to TSS+66 kb,
  • (24) between TSS+66 kb to TSS+67 kb,
  • (25) between TSS+67 kb to TSS+68 kb,
  • (26) between TSS+68 kb to TSS+69 kb,
  • (27) between TSS+69 kb to TSS+70 kb,
  • (28) between TSS+70 kb to TSS+75 kb,
  • (29) between TSS+75 kb to TSS+80 kb, or
  • (30) between TSS+80 kb to TSS+84.4 kb.
  • While not wishing to be bound by theory, it is believed that the two sets of breaks (e.g., the two pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • Knocking Down the BCL11A Gene Mediated by an Enzymatically Inactive Cas9 (eiCas9) Molecule or an eiCas9-Fusion Protein by Targeting the Promoter Region of the Gene.
  • A targeted knockdown approach reduces or eliminates expression of functional BCL11A gene product. As described herein, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene. In an embodiment, one or more eiCas9s may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9s fused to one or more chromatin modifying proteins may be used to alter chromatin status.
  • Methods and compositions discussed herein may be used to alter the expression of the BCL11A gene to treat or prevent SCD by targeting a promoter region of the BCL11A gene. In an embodiment, the promoter region, e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCL11A gene. In an embodiment, the methods and compositions discussed herein may be used to knock down the BCL11A gene to treat or prevent SCD by targeting 0.5 kb upstream or downstream of the TSS. A targeted knockdown approach reduces or eliminates expression of functional BCL11A gene product. As described herein, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCL11A gene.
  • Methods to Treat or Prevent Sickle Cell Disease (SCD)
  • Disclosed herein are the approaches to treat or prevent SCD, using the compositions and methods described herein.
  • One approach to treat or prevent SCD is to repair (i.e., correct) one or more mutations in the HBB gene, e.g., by HDR. In this approach, mutant HBB allele(s) are corrected and restored to wild type state. While not wishing to be bound by theory, it is believed that correction of the glutamic acid to valine substitution at amino acid 6 in the beta-globin gene restores wild type beta-globin production within erythroid cells. The method described herein can be performed in all cell types. Beta-globin is expressed in cells of erythroid cell lineage. In an embodiment, an erythroid cell is targeted.
  • In an embodiment, one HBB allele is repaired in the subject. In another embodiment, both HBB alleles are repaired in the subject. In either situation, the subjects can be cured of disease. As the disease only displays a phenotype when both alleles are mutated, repair of a single allele is adequate for a cure.
  • In one approach, the BCL11A gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
  • While not wishing to be bound by theory, it is considered that increasing levels of fetal hemoglobin (HbF) in subjects with SCD may ameliorate disease. Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues. Subjects with beta-thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
  • In an embodiment, knockout or knockdown of the BCL11A gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression. BCL11A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin. Knockout of the BCL11A gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta-thalassemia (HbF will form tetramers with hemoglobin alpha).
  • In an embodiment, the BCL11A knockout or knockdown is targeted specifically to cells of the erythroid lineage. BCL11A knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function. In an embodiment, erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells. For example, in the case of in vivo delivery, erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
  • In an embodiment, the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with SCD. For example, subjects with beta thalassemia major will suffer from less severe anemia and will need fewer blood transfusions. They will therefore have fewer complications arising from transfusions and chelation therapy. In an embodiment, the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells. For example, subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy. In an embodiment, the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
  • Knockdown or knockout of one or both BCL11A alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
  • In an embodiment, the method comprises initiating treatment of a subject prior to disease onset.
  • In an embodiment, the method comprises initiating treatment of a subject after disease onset.
  • In an embodiment, the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of SCD. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
  • In an embodiment, the method comprises initiating treatment of a subject in an advanced stage of disease.
  • Overall, initiation of treatment for subjects at all stages of disease is expected to prevent negative consequences of disease and be of benefit to subjects.
  • In an embodiment, the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
  • In an embodiment, the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
  • In an embodiment, the method comprises initiating treatment of a subject who is transfusion-dependent.
  • In an embodiment, the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
  • In an embodiment, the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
  • In an embodiment, a cell is treated, e.g., ex vivo. In an embodiment, an ex vivo treated cell is returned to a subject.
  • In an embodiment, allogenic or autologous bone marrow or erythroid cells are treated ex vivo. In an embodiment, an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject. In an embodiment, an erythroid cell, e.g., an autologous erythroid cell, is treated ex vivo and returned to the subject. In an embodiment, an autologous stem cell, is treated ex vivo and returned to the subject. In an embodiment, the modified HSCs are administered to the patient following no myeloablative pre-conditioning. In an embodiment, the modified HSCs are administered to the patient following mild myeloablative pre-conditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs. In other aspects, the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
  • In an embodiment, the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
  • In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
  • I. gRNA Molecules
  • A gRNA molecule, as that term is used herein, refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid. gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as “chimeric” gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules). A gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
  • Several exemplary gRNA structures, with domains indicated thereon, are provided in FIGS. 1A-1G. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in FIGS. 1A-1G and other depictions provided herein.
  • In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5′ to 3′:
      • a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31;
      • a first complementarity domain;
      • a linking domain;
      • a second complementarity domain (which is complementary to the first complementarity domain);
      • a proximal domain; and
      • optionally, a tail domain.
  • In an embodiment, a modular gRNA comprises:
      • a first strand comprising, preferably from 5′ to 3′;
        • a targeting domain (which is complementary to a target nucleic acid in the HBB gene or BCL11A gene, e.g., a targeting domain from Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31; and
        • a first complementarity domain; and
      • a second strand, comprising, preferably from 5′ to 3′:
        • optionally, a 5′ extension domain;
        • a second complementarity domain;
        • a proximal domain; and
        • optionally, a tail domain.
  • The domains are discussed briefly below.
  • The Targeting Domain
  • FIGS. 1A-1G provide examples of the placement of targeting domains.
  • The targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid. The targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid. It is understood that in a targeting domain and target sequence pair, the uracil bases in the targeting domain will pair with the adenine bases in the target sequence. In an embodiment, the target domain itself comprises in the 5′ to 3′ direction, an optional secondary domain, and a core domain. In an embodiment, the core domain is fully complementary with the target sequence. In an embodiment, the targeting domain is 5 to 50 nucleotides in length. The strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • In an embodiment, the targeting domain is 16 nucleotides in length.
  • In an embodiment, the targeting domain is 17 nucleotides in length.
  • In an embodiment, the targeting domain is 18 nucleotides in length.
  • In an embodiment, the targeting domain is 19 nucleotides in length.
  • In an embodiment, the targeting domain is 20 nucleotides in length.
  • In an embodiment, the targeting domain is 21 nucleotides in length.
  • In an embodiment, the targeting domain is 22 nucleotides in length.
  • In an embodiment, the targeting domain is 23 nucleotides in length.
  • In an embodiment, the targeting domain is 24 nucleotides in length.
  • In an embodiment, the targeting domain is 25 nucleotides in length.
  • In an embodiment, the targeting domain is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises 16 nucleotides.
  • In an embodiment, the targeting domain comprises 17 nucleotides.
  • In an embodiment, the targeting domain comprises 18 nucleotides.
  • In an embodiment, the targeting domain comprises 19 nucleotides.
  • In an embodiment, the targeting domain comprises 20 nucleotides.
  • In an embodiment, the targeting domain comprises 21 nucleotides.
  • In an embodiment, the targeting domain comprises 22 nucleotides.
  • In an embodiment, the targeting domain comprises 23 nucleotides.
  • In an embodiment, the targeting domain comprises 24 nucleotides.
  • In an embodiment, the targeting domain comprises 25 nucleotides.
  • In an embodiment, the targeting domain comprises 26 nucleotides.
  • Targeting domains are discussed in more detail below.
  • The First Complementarity Domain
  • FIGS. 1A-1G provide examples of first complementarity domains.
  • The first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, the first complementarity domain is 5 to 30 nucleotides in length. In an embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • In an embodiment, the first complementarity domain comprises 3 subdomains, which, in the 5′ to 3′ direction are: a 5′ subdomain, a central subdomain, and a 3′ subdomain. In an embodiment, the 5′ subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length. In an embodiment, the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length. In an embodiment, the 3′ subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • The first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • First complementarity domains are discussed in more detail below.
  • The Linking Domain
  • FIGS. 1A-1G provide examples of linking domains.
  • A linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA. The linking domain can link the first and second complementarity domains covalently or non-covalently. In an embodiment, the linkage is covalent. In an embodiment, the linking domain covalently couples the first and second complementarity domains, see, e.g., FIGS. 1B-1E. In an embodiment, the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain. Typically the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
  • In modular gRNA molecules the two molecules are associated by virtue of the hybridization of the complementarity domains see e.g., FIG. 1A.
  • A wide variety of linking domains are suitable for use in unimolecular gRNA molecules. Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length. In an embodiment, a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length. In an embodiment, a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length. In an embodiment, a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5′ to the second complementarity domain. In an embodiment, the linking domain has at least 50% homology with a linking domain disclosed herein.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Linking domains are discussed in more detail below.
  • The 5′ Extension Domain
  • In an embodiment, a modular gRNA can comprise additional sequence, 5′ to the second complementarity domain, referred to herein as the 5′ extension domain, see, e.g., FIG. 1A. In an embodiment, the 5′ extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length. In an embodiment, the 5′ extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • The Second Complementarity Domain
  • FIGS. 1A-1G provides examples of second complementarity domains.
  • The second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, e.g., as shown in FIGS. 1A-1B, the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
  • In an embodiment, the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, the second complementarity domain comprises 3 subdomains, which, in the 5′ to 3′ direction are: a 5′ subdomain, a central subdomain, and a 3′ subdomain. In an embodiment, the 5′ subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length. In an embodiment, the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length. In an embodiment, the 3′ subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • In an embodiment, the 5′ subdomain and the 3′ subdomain of the first complementarity domain, are respectively, complementary, e.g., fully complementary, with the 3′ subdomain and the 5′ subdomain of the second complementarity domain.
  • The second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • A Proximal domain
  • FIGS. 1A-1G provide examples of proximal domains.
  • In an embodiment, the proximal domain is 5 to 20 nucleotides in length. In an embodiment, the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
  • Some or all of the nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
  • A Tail Domain
  • FIGS. 1A-1G provide examples of tail domains.
  • As can be seen by inspection of the tail domains in FIGS. 1A-1E, a broad spectrum of tail domains are suitable for use in gRNA molecules. In an embodiment, the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In embodiment, the tail domain nucleotides are from or share homology with sequence from the 5′ end of a naturally occurring tail domain, see e.g., panels 4a or 5a of FIG. 1D or FIG. 1E. In an embodiment, the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
  • In an embodiment, the tail domain is absent or is 1 to 50 nucleotides in length. In an embodiment, the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
  • In an embodiment, the tail domain includes nucleotides at the 3′ end that are related to the method of in vitro or in vivo transcription. When a T7 promoter is used for in vitro transcription of the gRNA, these nucleotides may be any nucleotides present before the 3′ end of the DNA template. When a U6 promoter is used for in vivo transcription, these nucleotides may be the sequence UUUUUU. When alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
  • The domains of gRNA molecules are described in more detail below.
  • The Targeting Domain
  • The “targeting domain” of the gRNA is complementary to the “target domain” on the target nucleic acid. The strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the “complementary strand” of the target nucleic acid. Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg S H et al., Nature 2014 (doi: 10.1038/nature13011).
  • In an embodiment, the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, the targeting domain is 16 nucleotides in length.
  • In an embodiment, the targeting domain is 17 nucleotides in length.
  • In an embodiment, the targeting domain is 18 nucleotides in length.
  • In an embodiment, the targeting domain is 19 nucleotides in length.
  • In an embodiment, the targeting domain is 20 nucleotides in length.
  • In an embodiment, the targeting domain is 21 nucleotides in length.
  • In an embodiment, the targeting domain is 22 nucleotides in length.
  • In an embodiment, the targeting domain is 23 nucleotides in length.
  • In an embodiment, the targeting domain is 24 nucleotides in length.
  • In an embodiment, the targeting domain is 25 nucleotides in length.
  • In an embodiment, the targeting domain is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises 16 nucleotides.
  • In an embodiment, the targeting domain comprises 17 nucleotides.
  • In an embodiment, the targeting domain comprises 18 nucleotides.
  • In an embodiment, the targeting domain comprises 19 nucleotides.
  • In an embodiment, the targeting domain comprises 20 nucleotides.
  • In an embodiment, the targeting domain comprises 21 nucleotides.
  • In an embodiment, the targeting domain comprises 22 nucleotides.
  • In an embodiment, the targeting domain comprises 23 nucleotides.
  • In an embodiment, the targeting domain comprises 24 nucleotides.
  • In an embodiment, the targeting domain comprises 25 nucleotides.
  • In an embodiment, the targeting domain comprises 26 nucleotides.
  • In an embodiment, the targeting domain is 10+/−5, 20+/−5, 30+/−5, 40+/−5, 50+/−5, 60+/−5, 70+/−5, 80+/−5, 90+/−5, or 100+/−5 nucleotides, in length.
  • In an embodiment, the targeting domain is 20+/−5 nucleotides in length.
  • In an embodiment, the targeting domain is 20+/−10, 30+/−10, 40+/−10, 50+/−10, 60+/−10, 70+/−10, 80+/−10, 90+/−10, or 100+/−10 nucleotides, in length.
  • In an embodiment, the targeting domain is 30+/−10 nucleotides in length.
  • In an embodiment, the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • In another embodiment, the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • Typically the targeting domain has full complementarity with the target sequence. In an embodiment the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
  • In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5′ end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3′ end.
  • In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5′ end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3′ end.
  • In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • In an embodiment, the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain (“non-complementary nucleotides”), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • In an embodiment, no two consecutive nucleotides within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
  • In an embodiment, there are no noncomplementary nucleotides within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • In an embodiment, the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the targeting domain can be modified with a phosphorothioate, or other modification from Section VIII. In an embodiment, a nucleotide of the targeting domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • In an embodiment, the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • In an embodiment, the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5′ end of the targeting domain, within 5 nucleotides of the 3′ end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in a system in Section IV. The candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain. In another embodiment, 1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
  • In an embodiment, the targeting domain comprises, preferably in the 5′→3′ direction: a secondary domain and a core domain. These domains are discussed in more detail below.
  • The Core Domain and Secondary Domain of the Targeting Domain
  • The “core domain” of the targeting domain is complementary to the “core domain target” on the target nucleic acid. In an embodiment, the core domain comprises about 8 to about 13 nucleotides from the 3′ end of the targeting domain (e.g., the most 3′ 8 to 13 nucleotides of the targeting domain).
  • In an embodiment, the core domain and targeting domain, are independently, 6+/−2, 7+/−2, 8+/−2, 9+/−2, 10+/−2, 11+/−2, 12+/−2, 13+/−2, 14+/−2, 15+/−2, or 16+−2, nucleotides in length.
  • In an embodiment, the core domain and targeting domain, are independently, 10+/−2 nucleotides in length.
  • In an embodiment, the core domain and targeting domain, are independently, 10+/−4 nucleotides in length.
  • In an embodiment, the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18 nucleotides in length.
  • In an embodiment, the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
  • In an embodiment, the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
  • The core domain is complementary with the core domain target. Typically the core domain has exact complementarity with the core domain target. In an embodiment, the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • The “secondary domain” of the targeting domain of the gRNA is complementary to the “secondary domain target” of the target nucleic acid.
  • In an embodiment, the secondary domain is positioned 5′ to the core domain.
  • In an embodiment, the secondary domain is absent or optional.
  • In an embodiment, if the targeting domain is 26 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
  • In an embodiment, if the targeting domain is 25 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
  • In an embodiment, if the targeting domain is 24 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 11 to 16 nucleotides in length.
  • In an embodiment, if the targeting domain is 23 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 10 to 15 nucleotides in length.
  • In an embodiment, if the targeting domain is 22 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 9 to 14 nucleotides in length.
  • In an embodiment, if the targeting domain is 21 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 8 to 13 nucleotides in length.
  • In an embodiment, if the targeting domain is 20 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 7 to 12 nucleotides in length.
  • In an embodiment, if the targeting domain is 19 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 6 to 11 nucleotides in length.
  • In an embodiment, if the targeting domain is 18 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 5 to 10 nucleotides in length.
  • In an embodiment, if the targeting domain is 17 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 4 to 9 nucleotides in length.
  • In an embodiment, if the targeting domain is 16 nucleotides in length and the core domain (counted from the 3′ end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 3 to 8 nucleotides in length.
  • In an embodiment, the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
  • The secondary domain is complementary with the secondary domain target. Typically the secondary domain has exact complementarity with the secondary domain target. In an embodiment the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the secondary domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • In an embodiment, the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the core domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII. Typically, a core domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the secondary domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification from Section VIII. Typically, a secondary domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target, may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
  • In an embodiment, (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g., modifications from Section VIII) of the nucleotides of the secondary domain, may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications.
  • The First and Second Complementarity Domains
  • The first complementarity domain is complementary with the second complementarity domain.
  • Typically the first domain does not have exact complementarity with the second complementarity domain target. In an embodiment, the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain. In an embodiment, 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides, will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region. In an embodiment, an unpaired, or loop-out, region, e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain. In an embodiment, the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5′ end of the second complementarity domain.
  • In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • In an embodiment, the first and second complementarity domains are:
  • independently, 6+/−2, 7+/−2, 8+/−2, 9+/−2, 10+/−2, 11+/−2, 12+/−2, 13+/−2, 14+/−2, 15+/−2, 16+/−2, 17+/−2, 18+/−2, 19+/−2, or 20+/−2, 21+/−2, 22+/−2, 23+/−2, or 24+/−2 nucleotides in length;
  • independently, 6, 7, 8, 9, 10, 11, 12, 13, 14, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26, nucleotides in length; or
  • independently, 5 to 24, 5 to 23, 5 to 22, 5 to 21, 5 to 20, 7 to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • In an embodiment, the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
  • In an embodiment, the first and second complementary domains, independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • In an embodiment, the first and second complementary domains, independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • In an embodiment, the first and second complementary domains, independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no nucleotide that is modified within 5 nucleotides of the 5′ end of the domain, within 5 nucleotides of the 3′ end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from FIGS. 1A-1G.
  • In an embodiment, the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from FIGS. 1A-1G.
  • The duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
  • In an embodiment, the first and second complementarity domains, when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
  • (SEQ ID NO: 5)
    NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAA
    UAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC.
  • In an embodiment, the first and second complementarity domains, when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • (SEQ ID NO: 27)
    NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGAAAAGCAUAGCA
    AGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGU
    CGGUGC.
  • In an embodiment the first and second complementarity domains, when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • (SEQ ID NO: 28)
    NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGGAAACAGCAUAG
    CAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA
    GUCGGUGC.
  • In an embodiment the first and second complementarity domains, when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • (SEQ ID NO: 29)
    NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGUUUUGGAAACAA
    AACAGCAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAA
    GUGGCACCGAGUCGGUGC.
  • In an embodiment, nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
  • (SEQ ID NO: 30)
    NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAGAAAUAGCAAGUUAAUA
    UAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC;
    (SEQ ID NO: 31)
    NNNNNNNNNNNNNNNNNNNNGUUUAAGAGCUAGAAAUAGCAAGUUUAAA
    UAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC;
    or
    (SEQ ID NO: 32)
    NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAUGCUGUAUUGGAAACAA
    UACAGCAUAGCAAGUUAAUAUAAGGCUAGUCCGUUAUCAACUUGAAAAA
    GUGGCACCGAGUCGGUGC.
  • The 5′ Extension Domain
  • In an embodiment, a modular gRNA can comprise additional sequence, 5′ to the second complementarity domain. In an embodiment, the 5′ extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length. In an embodiment, the 5′ extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • In an embodiment, the 5′ extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the 5′ extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the 5′ extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment, a nucleotide of the 5′ extension domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • In an embodiment, the 5′ extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5′ extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end, e.g., in a modular gRNA molecule. In an embodiment, the 5′ extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end, e.g., in a modular gRNA molecule.
  • In an embodiment, the 5′ extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or more than 5 nucleotides away from one or both ends of the 5′ extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5′ extension domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5′ end of the 5′ extension domain, within 5 nucleotides of the 3′ end of the 5′ extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5′ extension domain.
  • Modifications in the 5′ extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate 5′ extension domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate 5′ extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the 5′ extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5′ extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5′ extension domain, or a 5′ extension domain described herein, e.g., from FIGS. 1A-1G.
  • The Linking Domain
  • In a unimolecular gRNA molecule the linking domain is disposed between the first and second complementarity domains. In a modular gRNA molecule, the two molecules are associated with one another by the complementarity domains.
  • In an embodiment, the linking domain is 10+/−5, 20+/−5, 30+/−5, 40+/−5, 50+/−5, 60+/−5, 70+/−5, 80+/−5, 90+/−5, or 100+/−5 nucleotides, in length.
  • In an embodiment, the linking domain is 20+/−10, 30+/−10, 40+/−10, 50+/−10, 60+/−10, 70+/−10, 80+/−10, 90+/−10, or 100+/−10 nucleotides, in length.
  • In an embodiment, the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • In another embodiment, the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • In an embodiment, the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
  • In and embodiment, the linking domain is a covalent bond.
  • In an embodiment, the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3′ end of the first complementarity domain and/or the 5-end of the second complementarity domain. In an embodiment, the duplexed region can be 20+/−10 base pairs in length. In an embodiment, the duplexed region can be 10+/−5, 15+/−5, 20+/−5, or 30+/−5 base pairs in length. In an embodiment, the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
  • Typically the sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
  • In an embodiment, the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the linking domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the linking domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII. In an embodiment, the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated a system described in Section IV. A candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the linking domain has at least 60, 70, 80, 85, 90 or 95% homology 30 with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from FIGS. 1A-1G.
  • The Proximal Domain
  • In an embodiment, the proximal domain is 6+/−2, 7+/−2, 8+/−2, 9+/−2, 10+/−2, 11+/−2, 12+/−2, 13+/−2, 14+/−2, 14+/−2, 16+/−2, 17+/−2, 18+/−2, 19+/−2, or 20+/−2 nucleotides in length.
  • In an embodiment, the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • In an embodiment, the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • In an embodiment, the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the proximal domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the proximal domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • In an embodiment, the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end, e.g., in a modular gRNA molecule.
  • In an embodiment, the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5′ end of the proximal domain, within 5 nucleotides of the 3′ end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from FIGS. 1A-1G. The Tail Domain
  • In an embodiment, the tail domain is 10+/−5, 20+/−5, 30+/−5, 40+/−5, 50+/−5, 60+/−5, 70+/−5, 80+/−5, 90+/−5, or 100+/−5 nucleotides, in length.
  • In an embodiment, the tail domain is 20+/−5 nucleotides in length.
  • In an embodiment, the tail domain is 20+/−10, 30+/−10, 40+/−10, 50+/−10, 60+/−10, 70+/−10, 80+/−10, 90+/−10, or 100+/−10 nucleotides, in length.
  • In an embodiment, the tail domain is 25+/−10 nucleotides in length.
  • In an embodiment, the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • In another embodiment, the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • In an embodiment, the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
  • In an embodiment, the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the tail domain can comprise a 2′ modification (e.g., a modification at the 2′ position on ribose), e.g., a 2-acetylation, e.g., a 2′ methylation, or other modification(s) from Section VIII.
  • In an embodiment, the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5′ end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3′ end.
  • In an embodiment, the tail domain comprises a tail duplex domain, which can form a tail duplexed region. In an embodiment, the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length. In an embodiment, a further single stranded domain, exists 3′ to the tail duplexed domain. In an embodiment, this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
  • In an embodiment, the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from FIGS. 1A-1G.
  • In an embodiment, the proximal and tail domain, taken together comprise the following sequences:
  • (SEQ ID NO: 33)
    AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCU,
    or
    (SEQ ID NO: 34)
    AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGGUG
    C,
    or
    (SEQ ID NO: 35)
    AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCGGA
    UC,
    or
    (SEQ ID NO: 36)
    AAGGCUAGUCCGUUAUCAACUUGAAAAAGUG,
    or
    (SEQ ID NO: 37)
    AAGGCUAGUCCGUUAUCA,
    or
    (SEQ ID NO: 38)
    AAGGCUAGUCCG.
  • In an embodiment, the tail domain comprises the 3′ sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
  • In an embodiment, the tail domain comprises the 3′ sequence UUUU, e.g., if an H1 promoter is used for transcription.
  • In an embodiment, tail domain comprises variable numbers of 3′ Us depending, e.g., on the termination signal of the pol-III promoter used.
  • In an embodiment, the tail domain comprises variable 3′ sequence derived from the DNA template if a T7 promoter is used.
  • In an embodiment, the tail domain comprises variable 3′ sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
  • In an embodiment, the tail domain comprises variable 3′ sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
  • Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • In an embodiment, the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5′ end of the tail domain, within 5 nucleotides of the 3′ end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5′ end of the tail domain, within 5 nucleotides of the 3′ end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5′ end of the tail domain, within 5 nucleotides of the 3′ end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • In an embodiment a gRNA has the following structure:
  • 5′ [targeting domain]-[first complementarity domain]-[linking domain]-[second complementarity domain]-[proximal domain]-[tail domain]-3′
  • wherein, the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
  • the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein;
  • the linking domain is 1 to 5 nucleotides in length;
  • the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
  • the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and
  • the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
  • Exemplary Chimeric gRNAs
  • In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5′ to 3′:
      • a targeting domain (which is complementary to a target nucleic acid);
      • a first complementarity domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides;
      • a linking domain;
      • a second complementarity domain (which is complementary to the first complementarity domain);
      • a proximal domain; and a tail domain,
      • wherein,
      • (a) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
      • (b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain; or
      • (c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUUUU (SEQ ID NO: 45). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
  • In some embodiments, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUACUAAAAC AAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUUUU (SEQ ID NO: 40). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
  • The sequences and structures of exemplary chimeric gRNAs are also shown in FIGS. 1H-11 .
  • Exemplary Modular gRNAs
  • In an embodiment, a modular gRNA comprises:
      • a first strand comprising, preferably from 5′ to 3′;
        • a targeting domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides;
        • a first complementarity domain; and
        • a second strand, comprising, preferably from 5′ to 3′:
        • optionally a 5′ extension domain;
        • a second complementarity domain;
        • a proximal domain; and
        • a tail domain,
      • wherein:
      • (a) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
      • (b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain; or
      • (c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 5 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain.
  • In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • II. Methods for Designing gRNAs
  • Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
  • Methods for selection and validation of target sequences as well as off-target analyses are described, e.g., in Mali et al., 2013 Science 339(6121): 823-826; Hsu et al. Nat Biotechnol, 31(9): 827-32; Fu et al., 2014 Nat Biotechnol, doi: 10.1038/nbt.2808. PubMed PMID: 24463574; Heigwer et al., 2014 Nat Methods 11(2):122-3. doi: 10.1038/nmeth.2812. PubMed PMID: 24481216; Bae et al., 2014 Bioinformatics PubMed PMID: 24463181; Xiao A et al., 2014 Bioinformatics PubMed PMID: 24389662.
  • For example, a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage. For each possible gRNA choice using S. pyogenes Cas9, software tools can identify all potential off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to a certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs. The cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme. Each possible gRNA can then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage. Other functions, e.g., automated reagent design for gRNA vector construction, primer design for the on-target Surveyor assay, and primer design for high-throughput detection and quantification of off-target cleavage via next-generation sequencing, can also be included in the tool. Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein.
  • Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb. 17. Bae S, Park J, Kim J S. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined, an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality or presence of a 5′ G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of S. aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A “high level of orthogonality” or “good orthogonality” may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer, 21-mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Targeting domains, disclosed herein, may comprise the 17-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 18-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 19-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 21-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 22-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 23-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31. Targeting domains, disclosed herein, may comprises the 24-mer described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 15 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired “nickase” strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired “nickase” strategy is based on two considerations:
      • 1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5′ overhangs.
      • 2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
  • The targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • Strategies to Identify gRNAs for S. pyogenes, S. aureus, and N. meningitidis to Correct a Mutation in the HBB Gene
  • gRNAs were designed for use with S. pyogenes, and S. aureus Cas9 enzymes to target the E6V mutation in the HBB gene. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • In one strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 1A-1C). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to target the E6V mutation in the HBB gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality. Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5′G. Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5′G. Note that tiers are non-inclusive (each gRNA is listed only once). gRNAs for use with the S. aureus (Table 1D), Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list.
  • In a second strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 13A-13D) and 5 tiers for S. aureus (Tables 14A-14C). The targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5′ G. For selection of tier 2 gRNAs, a short distance and high orthogonality were required but the presence of a 5′G was not required. Tier 3 uses the same distance restriction and the requirement for a 5′G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5′G. The targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation, (2) a high level of orthogonality, and (3) the presence of a 5′ G. For selection of tier 2 gRNAs, a short distance and high orthogonality were required but the presence of a 5′G was not required. Tier 3 uses the same distance restriction and the requirement for a 5′G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5′G. Tier 5 is selected based on (1) a short distance to the target position, e.g., within 100 bp upstream and 100 bp downstream of the mutation and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier. In some instances, there are no corresponding exemplary gRNAs in certain tiers.
  • In a third strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 24A-24D), 4 tiers for S. aureus (Tables 25A-25B) and 3 tiers for N. meningitidis (Tables 26). The targeting domain for tier 1 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) a high level of orthogonality. The targeting domain for tier 2 gRNA molecules to use with S. pyogenes Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) the presence of a 5′G. The targeting domain for tier 3 gRNA molecules to use with S. pyogenes Cas9 were selected based on distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation. The targeting domain for tier 1 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation, (2) a high level of orthogonality and (3) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation, (2) the presence of a 5′G, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules to use with S. aureus Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) PAM is NNGRRV. The targeting domain for tier 1 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) a high level of orthogonality. The targeting domain for tier 2 gRNA molecules to use with N. meningitidis Cas9 were selected based on (1) distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation and (2) the presence of a 5′G. The targeting domain for tier 3 gRNA molecules to use with N. meningitidis Cas9 were selected based on distance to the target position, e.g., within 200 bp upstream and 200 bp downstream of the mutation.
  • In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B in Table 24D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B in Table 24D (for S. pyogenes). For example, HBB-9, HBB-20can be combined with HBB-11, HBB-39.
  • Strategies to Identify gRNAs for S. pyogenes, S. aureus, and N. meningitidis to Knock Out the BCL11A Gene
  • gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to induce an insertion or deletion of one or more nucleotides mediated by NHEJ in close proximity to or within the early coding region. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • In one strategy, the gRNAs were identified and ranked into 4 tires for S. pyogenes (Tables 2A-2D). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to knockout the BCL11A gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality. Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5′G. Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5′G. Tier 4 only required the presence in the coding sequence. Note that tiers are non-inclusive (each gRNA is listed only once). gRNAs for use with the S. aureus (Table 2E), and N. meningitidis (Table 2F) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • In a second strategy, the gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 4A-4E), and S. aureus (Tables 5A-5E); and 2 tiers for N. meningitidis (Tables 6A-6B). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality and (3) the presence of 5′G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) the presence of 5′G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). For N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain for tier 2 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • In a third strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 15A-15D), and N. meningitidis (Tables 17A-17B); and 5 tiers for S. aureus (Tables 16A-16D). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a the target site (e.g., start codon) mutation, e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site, e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within 500 bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • In an embodiment, when a single gRNA molecule is used to target a Cas9 nickase to create a single strand break in close proximity to the BCL11A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • In an embodiment, when a single gRNA molecule is used to target a Cas9 nuclease to create a double strand break to in close proximity to the BCL11A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • In an embodiment, dual targeting is used to create two double strand breaks to in close proximity to the mutation, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene. In an embodiment, the first and second gRNAs are used to target two Cas9 nucleases to flank, e.g., the first of gRNA is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), and the second gRNA is used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • In an embodiment, dual targeting is used to create a double strand break and a pair of single strand breaks to delete a genomic sequence including the BCL11A target position. In an embodiment, the first, second and third gRNAs are used to target one Cas9 nuclease and two Cas9 nickases to flank, e.g., the first gRNA that will be used with the Cas9 nuclease is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position) or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position), and the second and third gRNAs that will be used with the Cas9 nickase pair are used to target the opposite side of the mutation (e.g., within 200 bp upstream or downstream of the BCL11A target position) in the BCL11A gene.
  • In an embodiment, when four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four single strand breaks to delete genomic sequence including the mutation, the first pair and second pair of gRNAs are used to target four Cas9 nickases to flank, e.g., the first pair of gRNAs are used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCL11A target position), and the second pair of gRNAs are used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCL11A target position) in the BCL11A gene.
  • In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 15D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 15D (for S. pyogenes). For example, BCL11A-5355 or BCL11A-5380 can be combined with BCL11A-5321 or BCL11A-5416; or BCL11A-5333, BCL11A-5354, or BCL11A-5329 can be combined with BCL11A-5367 or BCL11A-5341.
  • Strategies to Identify gRNAs for S. pyogenes, S. aureus, and N. meningitidis to Knock Down the BCL11A Gene
  • gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules, e.g., enzymatically inactive Cas9 (eiCas9) molecules or Cas9 fusion proteins (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter (e.g., to block, reduce, or decrease) the transcription of the BCL11A gene. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules.
  • In one strategy, the targeting domains for gRNA molecules to knockdown the BCL11A gene were designed to target the 1 kb of sequence 3′ of the start codon. They were listed in a single list for S. pyogenes (Table 3A), S. aureus (Table 3B) and N. meningitidis (Table 3C).
  • In a second strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 10A-10D), and S. aureus (Tables 11A-11D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 12). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., a transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), (2) a high level of orthogonality and (3) the presence of 5′G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) the presence of 5′G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site).
  • In a third strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 18A-18C). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 19A-19B). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis (Tables 20A-20C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500 bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • Strategies to Identify gRNAs for S. pyogenes, S. aureus, and N. meningitidis to Remove (e.g., Delete) the Enhancer Region the BCL11A Gene
  • gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to remove (e.g., delete) the enhancer region in the BCL11A gene. As an example, two strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules.
  • In an strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 7A-7D) and for S. aureus (Tables 8A-8D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 9). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes, S. aureus Cas9 were selected based on (1) a reasonable distance to the target position, e.g., within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) a high level of orthogonality and (3) presence of a 5′G. For selection of tier 2 gRNAs, reasonable distance and high orthogonality were required but the presence of a 5′G was not required. Tier 3 uses the same distance restriction and the requirement for a 5′G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5′G. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • In a second strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 21A-21E). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5′G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and (2) presence of 5′G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 22A-22E). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) a high level of orthogonality, (3)) presence of 5′G and (4) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) presence of 5′G and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis (Tables 23A-23C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5′G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and (2) presence of 5′G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 20E (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 20E (for S. pyogenes). For example, BCL11A-13271 or BCL11A-13264 can be combined with BCL11A-13276; or BCL11A-13262 or BCL11A-13282 can be combined with BCL11A-13290 or BCL11A-13280.
  • In an embodiment, two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule. In another embodiment, when two or more (e.g., three or four) gRNAs are used with two or more Cas9 molecules, at least one Cas9 molecule is from a different species than the other Cas9 molecule(s). For example, when two gRNA molecules are used with two Cas9 molecules, one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
  • Any of the targeting domains in the tables described herein can be used with a Cas9 nickase molecule to generate a single strand break.
  • Any of the targeting domains in the tables described herein can be used with a Cas9 nuclease molecule to generate a double strand break.
  • When two gRNAs designed for use to target two Cas9 molecules, one Cas9 can be one species, the second Cas9 can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
  • It is contemplated herein that any upstream gRNA described herein may be paired with any downstream gRNA described herein. When an upstream gRNA designed for use with one species of Cas9 is paired with a downstream gRNA designed for use from a different species of Cas9, both Cas9 species are used to generate a single or double-strand break, as desired.
  • Exemplary Targeting Domains
  • Table 1A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters, and are selected based on the close proximity and orientation to mutation and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a Cas9 molecule (e.g., a S. pyogenes Cas9 molecule) that gives double stranded cleavage. Any of the targeting domains in the table can be used with a Cas9 (e.g., a S. pyogenes Cas9 nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using Cas9 nickases (e.g., a S. pyogenes Cas9 nickase) with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position. In an embodiment, two 20-mer guide RNAs are used to target two Cas9 nucleases (e.g., two S. pyogenes Cas9 nucleases) or two Cas9 nickases (e.g., two S. pyogenes Cas9 nickases), e.g., HBB-8 and HBB-25 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., HBB-35 and HBB-53 are used.
  • TABLE 1A
    Target SEQ
    1st Tier DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-8 AAGGUGAACGUGGAUGAAGU 20 387
    HBB-25 + GUAACGGCAGACUUCUCCUC 20 388
    HBB-35 GUGAACGUGGAUGAAGU 17 389
    HBB-53 + ACGGCAGACUUCUCCUC 17 390
  • Table 1B provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters and are selected based on the presence of a 5′ G and reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 1B
    Target SEQ
    2nd Tier DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-12 GAAGUUGGUGGUGAGGCCCU 20 391
    HBB-1 GCAACCUCAAACAGACACCA 20 392
    HBB-52 + GCCCCACAGGGCAGUAA 17 393
    HBB-32 GCCGUUACUGCCCUGUG 17 394
    HBB-46 GGAGACCAAUAGAAACU 17 395
    HBB-37 GGAUGAAGUUGGUGGUG 17 396
    HBB-29 GGUGCAUCUGACUCCUG 17 397
    HBB-4 GUCUGCCGUUACUGCCCUGU 20 398
    HBB-9 GUGAACGUGGAUGAAGUUGG 20 399
    HBB-34 GUGGGGCAAGGUGAACG 17 400
    HBB-40 GUGGUGAGGCCCUGGGC 17 401
    HBB-44 GUUACAAGACAGGUUUA 17 402
    HBB-51 + GUUCACCUUGCCCCACA 17 403
    HBB-39 GUUGGUGGUGAGGCCCU 17 404
  • Table 1C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the third tier parameters and are selected based on reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 1C
    Target SEQ
    3rd Tier DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-36 AACGUGGAUGAAGUUGG 17 405
    HBB-17 AAGGUUACAAGACAGGUUUA 20 406
    HBB-47 + ACAUGCCCAGUUUCUAU 17 407
    HBB-55 + ACCAUGGUGUCUGUUUG 17 408
    HBB-28 ACCUCAAACAGACACCA 17 409
    HBB-20 + ACCUUGAUACCAACCUGCCC 20 410
    HBB-45 AGGAGACCAAUAGAAAC 17 411
    HBB-54 + AGGAGUCAGAUGCACCA 17 412
    HBB-3 AGUCUGCCGUUACUGCCCUG 20 413
    HBB-38 AGUUGGUGGUGAGGCCC 17 414
    HBB-23 + CACGUUCACCUUGCCCCACA 20 415
    HBB-2 CAUGGUGCAUCUGACUCCUG 20 416
    HBB-22 + CCACGUUCACCUUGCCCCAC 20 417
    HBB-15 CCCUGGGCAGGUUGGUAUCA 20 418
    HBB-7 CCUGUGGGGCAAGGUGAACG 20 419
    HBB-21 + CCUUGAUACCAACCUGCCCA 20 420
    HBB-10 CGUGGAUGAAGUUGGUGGUG 20 421
    HBB-6 CGUUACUGCCCUGUGGGGCA 20 422
    HBB-50 + CGUUCACCUUGCCCCAC 17 423
    HBB-26 + CUCAGGAGUCAGAUGCACCA 20 424
    HBB-30 CUGCCGUUACUGCCCUG 17 425
    HBB-24 + CUUGCCCCACAGGGCAGUAA 20 426
    HBB-19 UAAGGAGACCAAUAGAAACU 20 427
    HBB-33 UACUGCCCUGUGGGGCA 17 428
    HBB-43 UAUCAAGGUUACAAGAC 17 429
    HBB-5 UCUGCCGUUACUGCCCUGUG 20 430
    HBB-11 UGAAGUUGGUGGUGAGGCCC 20 431
    HBB-41 UGAGGCCCUGGGCAGGU 17 432
    HBB-49 + UGAUACCAACCUGCCCA 17 433
    HBB-27 + UGCACCAUGGUGUCUGUUUG 20 434
    HBB-31 UGCCGUUACUGCCCUGU 17 435
    HBB-42 UGGGCAGGUUGGUAUCA 17 436
    HBB-16 UGGUAUCAAGGUUACAAGAC 20 437
    HBB-14 UGGUGAGGCCCUGGGCAGGU 20 438
    HBB-18 UUAAGGAGACCAAUAGAAAC 20 439
    HBB-48 + UUGAUACCAACCUGCCC 17 440
    HBB-13 UUGGUGGUGAGGCCCUGGGC 20 441
  • Table 1D provides exemplary targeting domains for the E6V target site in the HBB gene selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. aureus single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE ID
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-56 CACCAUGGUGCAUCUGACUC 20 442
    HBB-57 CCAUGGUGCAUCUGACUCCU 20 443
    HBB-58 CAUGGUGCAUCUGACUCCUG 20 444
    HBB-59 UGGUGCAUCUGACUCCUGAG 20 445
    HBB-60 AAGUCUGCCGUUACUGCCCU 20 446
    HBB-61 AGUCUGCCGUUACUGCCCUG 20 447
    HBB-62 UUACUGCCCUGUGGGGCAAG 20 448
    HBB-63 CCCUGUGGGGCAAGGUGAAC 20 449
    HBB-64 GUGGGGCAAGGUGAACGUGG 20 450
    HBB-65 GAACGUGGAUGAAGUUGGUG 20 451
    HBB-66 AUGAAGUUGGUGGUGAGGCC 20 452
    HBB-67 CAAGGUUACAAGACAGGUUU 20 453
    HBB-68 AAGGUUACAAGACAGGUUUA 20 454
    HBB-69 GACAGGUUUAAGGAGACCAA 20 455
    HBB-70 UUUAAGGAGACCAAUAGAAA 20 456
    HBB-71 CAUGGUGCAUCUGACUC 20 457
    HBB-72 UGGUGCAUCUGACUCCU 17 458
    HBB-73 GGUGCAUCUGACUCCUG 17 459
    HBB-74 UGCAUCUGACUCCUGAG 17 460
    HBB-75 UCUGCCGUUACUGCCCU 17 461
    HBB-76 CUGCCGUUACUGCCCUG 17 462
    HBB-77 CUGCCCUGUGGGGCAAG 17 463
    HBB-78 UGUGGGGCAAGGUGAAC 17 464
    HBB-79 GGGCAAGGUGAACGUGG 17 465
    HBB-80 CGUGGAUGAAGUUGGUG 17 466
    HBB-81 AAGUUGGUGGUGAGGCC 17 467
    HBB-82 GGUUACAAGACAGGUUU 17 468
    HBB-83 GUUACAAGACAGGUUUA 17 469
    HBB-84 AGGUUUAAGGAGACCAA 17 470
    HBB-85 AAGGAGACCAAUAGAAA 17 471
    HBB-86 + GCUAGUGAACACAGUUGUGU 20 472
    HBB-87 + GUGUCUGUUUGAGGUUGCUA 20 473
    HBB-88 + AGAUGCACCAUGGUGUCUGU 20 474
    HBB-89 + GUAACGGCAGACUUCUCCUC 20 475
    HBB-90 + AGUAACGGCAGACUUCUCCU 20 476
    HBB-91 + UCCACGUUCACCUUGCCCCA 20 477
    HBB-92 + AACCUUGAUACCAACCUGCC 20 478
    HBB-93 + AGUGAACACAGUUGUGU 17 479
    HBB-94 + UCUGUUUGAGGUUGCUA 17 480
    HBB-95 + UGCACCAUGGUGUCUGU 17 481
    HBB-96 + ACGGCAGACUUCUCCUC 17 482
    HBB-97 + AACGGCAGACUUCUCCU 17 483
    HBB-98 + ACGUUCACCUUGCCCCA 17 484
    HBB-99 + CUUGAUACCAACCUGCC 17 485
  • Table 2A provides exemplary targeting domains for knocking out the BCL11A gene selected according to first tier parameters, and are selected based on close proximity to start of the coding sequence and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position. In an embodiment, two 20-mer guide RNAs are used to target two S. pyogenes Cas9 nucleases or two S. pyogenes Cas9 nickases, e.g., BCL11A-31 and BCL11A-40, BCL11A-30 and BCL11A-42, or BCL11A-24 and BCL11A-53 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., BCL11A-79 and BCL11A-90, BCL11A-77 and BCL11A-92, or BCL11A-71 and BCL11A-103 are used.
  • TABLE 2A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-32 - UGGCAUCCAGGUCACGCCAG 20 486
    BCL11A-40 + GAUGCUUUUUUCAUCUCGAU 20 487
    BCL11A-30 - GCAUCCAAUCCCGUGGAGGU 20 488
    BCL11A-42 + UUUUCAUCUCGAUUGGUGAA 20 489
    BCL11A-24 - CCAGAUGAACUUCCCAUUGG 20 490
    BCL11A-53 + AGGAGGUCAUGAUCCCCUUC 20 491
    BCL11A-79 - CAUCCAGGUCACGCCAG 17 492
    BCL11A-90 + GCUUUUUUCAUCUCGAU 17 493
    BCL11A-77 - UCCAAUCCCGUGGAGGU 17 494
    BCL11A-92 + UCAUCUCGAUUGGUGAA 17 495
    BCL11A-71 - GAUGAACUUCCCAUUGG 17 496
    BCL11A-103 + AGGUCAUGAUCCCCUUC 17 497
  • Table 2B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters and are selected based on close proximity to start of the coding sequence and presence of a 5′ G. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 2B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-28 - GAAAAAAGCAUCCAAUCCCG 20 498
    BCL11A-15 - GAACCAGACCACGGCCCGUU 20 499
    BCL11A-37 + GACCUGGAUGCCAACCUCCA 20 500
    BCL11A-120 + GAGCUCCAUGUGCAGAACGA 20 501
    BCL11A-106 + GAGCUCCCAACGGGCCG 17 502
    BCL11A-112 - GAGCUCUAAUCCCCACGCCU 20 503
    BCL11A-113 - GAGUGCAGAAUAUGCCCCGC 20 504
    BCL11A-35 + GAUAAACAAUCGUCAUCCUC 20 505
    BCL11A-19 - GAUCAUGACCUCCUCACCUG 20 506
    BCL11A-60 - GAUGAUGAACCAGACCA 17 507
    BCL11A-39 + GAUGCCAACCUCCACGGGAU 20 508
    BCL11A-133 + GCACUCAUCCCAGGCGU 17 509
    BCL11A-130 - GCAGAAUAUGCCCCGCA 17 510
    BCL11A-115 + GCAUAUUCUGCACUCAUCCC 20 511
    BCL11A-89 + GCCAACCUCCACGGGAU 17 512
    BCL11A-23 - GCCAGAUGAACUUCCCAUUG 20 513
    BCL11A-17 - GCCCGUUGGGAGCUCCAGAA 20 514
    BCL11A-83 + GCUAUGUGUUCCUGUUU 17 515
    BCL11A-135 + GCUCCAUGUGCAGAACG 17 516
    BCL11A-57 + GCUCCCAACGGGCCGUGGUC 20 517
    BCL11A-127 - GCUCUAAUCCCCACGCC 17 518
    BCL11A-6 + GCUGGGGUUUGCCUUGCUUG 20 519
    BCL11A-111 - GGAGCUCUAAUCCCCACGCC 20 520
    BCL11A-101 + GGCACUGCCCACAGGUG 17 521
    BCL11A-52 + GGCACUGCCCACAGGUGAGG 20 522
    BCL11A-16 - GGCCCGUUGGGAGCUCCAGA 20 523
    BCL11A-12 + GGGGUUUGCCUUGCUUG 17 524
    BCL11A-109 + GUAAGAAUGGCUUCAAG 17 525
    BCL11A-123 + GUGCAGAACGAGGGGAGGAG 20 526
    BCL11A-21 - GUGCCAGAUGAACUUCCCAU 20 527
    BCL11A-50 + GUUCAUCUGGCACUGCCCAC 20 528
    BCL11A-65 - GUUGGGAGCUCCAGAAG 17 529
  • Table 2C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters and are selected based on close proximity to start of the coding sequence. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 2C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-75 - AAAAGCAUCCAAUCCCG 17 530
    BCL11A-29 - AAAAGCAUCCAAUCCCGUGG 20 531
    BCL11A-47 + AAAAUAAGAAUGUCCCCCAA 20 532
    BCL11A-85 + AAACAAUCGUCAUCCUC 17 533
    BCL11A-73 - AAACGGAAACAAUGCAA 17 534
    BCL11A-125 - AAACUUCUGCACUGGAG 17 535
    BCL11A-48 + AAAUAAGAAUGUCCCCCAAU 20 536
    BCL11A-1 - AACCCCAGCACUUAAGCAAA 20 537
    BCL11A-13 - ACAGAUGAUGAACCAGACCA 20 538
    BCL11A-61 - ACCAGACCACGGCCCGU 17 539
    BCL11A-2 - ACCCCAGCACUUAAGCAAAC 20 540
    BCL11A-38 + ACCUGGAUGCCAACCUCCAC 20 541
    BCL11A-102 + ACUGCCCACAGGUGAGG 17 542
    BCL11A-119 + AGAGCUCCAUGUGCAGAACG 20 543
    BCL11A-70 - AGAUGAACUUCCCAUUG 17 544
    BCL11A-76 - AGCAUCCAAUCCCGUGG 17 545
    BCL11A-121 + AGCUCCAUGUGCAGAACGAG 20 546
    BCL11A-81 - AGGAAUUUGCCCCAAAC 17 547
    BCL11A-114 - AGUGCAGAAUAUGCCCCGCA 20 548
    BCL11A-97 + AUAAGAAUGUCCCCCAA 17 549
    BCL11A-20 - AUCAUGACCUCCUCACCUGU 20 550
    BCL11A-44 + AUCUCGAUUGGUGAAGGGGA 20 551
    BCL11A-67 - AUGACCUCCUCACCUGU 17 552
    BCL11A-138 + AUGUGCAGAACGAGGGG 17 553
    BCL11A-3 + AUUCCCGUUUGCUUAAGUGC 20 554
    BCL11A-95 + AUUGGUGAAGGGGAAGG 17 555
    BCL11A-26 - CACAAACGGAAACAAUGCAA 20 556
    BCL11A-134 + CACUCAUCCCAGGCGUG 17 557
    BCL11A-139 + CAGAACGAGGGGAGGAG 17 558
    BCL11A-69 - CAGAUGAACUUCCCAUU 17 559
    BCL11A-96 + CAGCUUUUUCUAAGCAG 17 560
    BCL11A-86 + CAUCCUCUGGCGUGACC 17 561
    BCL11A-93 + CAUCUCGAUUGGUGAAG 17 562
    BCL11A-100 + CAUCUGGCACUGCCCAC 17 563
    BCL11A-66 - CAUGACCUCCUCACCUG 17 564
    BCL11A-99 + CCAAUGGGAAGUUCAUC 17 565
    BCL11A-46 + CCACAGCUUUUUCUAAGCAG 20 566
    BCL11A-62 - CCAGACCACGGCCCGUU 17 567
    BCL11A-68 - CCAGAUGAACUUCCCAU 17 568
    BCL11A-8 - CCAGCACUUAAGCAAAC 17 569
    BCL11A-107 + CCCAACGGGCCGUGGUC 17 570
    BCL11A-7 - CCCAGCACUUAAGCAAA 17 571
    BCL11A-49 + CCCCCAAUGGGAAGUUCAUC 20 572
    BCL11A-55 + CCCCUUCUGGAGCUCCCAAC 20 573
    BCL11A-18 - CCCGUUGGGAGCUCCAGAAG 20 574
    BCL11A-9 + CCCGUUUGCUUAAGUGC 17 575
    BCL11A-63 - CCGUUGGGAGCUCCAGA 17 576
    BCL11A-10 + CCGUUUGCUUAAGUGCU 17 577
    BCL11A-27 - CCUCUGCUUAGAAAAAGCUG 20 578
    BCL11A-104 + CCUUCUGGAGCUCCCAA 17 579
    BCL11A-36 + CGUCAUCCUCUGGCGUGACC 20 580
    BCL11A-78 - CGUGGAGGUUGGCAUCC 17 581
    BCL11A-64 - CGUUGGGAGCUCCAGAA 17 582
    BCL11A-11 + CGUUUGCUUAAGUGCUG 17 583
    BCL11A-84 + CUAUGUGUUCCUGUUUG 17 584
    BCL11A-136 + CUCCAUGUGCAGAACGA 17 585
    BCL11A-128 - CUCUAAUCCCCACGCCU 17 586
    BCL11A-118 + CUGCACUCAUCCCAGGCGUG 20 587
    BCL11A-74 - CUGCUUAGAAAAAGCUG 17 588
    BCL11A-56 + CUGGAGCUCCCAACGGGCCG 20 589
    BCL11A-87 + CUGGAUGCCAACCUCCA 17 590
    BCL11A-105 + CUUCUGGAGCUCCCAAC 17 591
    BCL11A-124 - UAAACUUCUGCACUGGA 17 592
    BCL11A-98 + UAAGAAUGUCCCCCAAU 17 593
    BCL11A-34 - UAGAGGAAUUUGCCCCAAAC 20 594
    BCL11A-131 + UAUUCUGCACUCAUCCC 17 595
    BCL11A-137 + UCCAUGUGCAGAACGAG 17 596
    BCL11A-122 + UCCAUGUGCAGAACGAGGGG 20 597
    BCL11A-126 - UCCCCUCGUUCUGCACA 17 598
    BCL11A-54 + UCCCCUUCUGGAGCUCCCAA 20 599
    BCL11A-31 - UCCCGUGGAGGUUGGCAUCC 20 600
    BCL11A-5 + UCCCGUUUGCUUAAGUGCUG 20 601
    BCL11A-110 - UCCUCCCCUCGUUCUGCACA 20 602
    BCL11A-94 + UCGAUUGGUGAAGGGGA 17 603
    BCL11A-45 + UCGAUUGGUGAAGGGGAAGG 20 604
    BCL11A-117 + UCUGCACUCAUCCCAGGCGU 20 605
    BCL11A-51 + UCUGGCACUGCCCACAGGUG 20 606
    BCL11A-59 + UCUGUAAGAAUGGCUUCAAG 20 607
    BCL11A-14 - UGAACCAGACCACGGCCCGU 20 608
    BCL11A-132 + UGCACUCAUCCCAGGCG 17 609
    BCL11A-129 - UGCAGAAUAUGCCCCGC 17 610
    BCL11A-22 - UGCCAGAUGAACUUCCCAUU 20 611
    BCL11A-82 + UGCUAUGUGUUCCUGUU 17 612
    BCL11A-88 + UGGAUGCCAACCUCCAC 17 613
    BCL11A-58 + UGGUUCAUCAUCUGUAAGAA 20 614
    BCL11A-33 - UGUUUAUCAACGUCAUCUAG 20 615
    BCL11A-80 - UUAUCAACGUCAUCUAG 17 616
    BCL11A-25 - UUAUUUUUAUCGAGCACAAA 20 617
    BCL11A-108 + UUCAUCAUCUGUAAGAA 17 618
    BCL11A-91 + UUCAUCUCGAUUGGUGA 17 619
    BCL11A-4 + UUCCCGUUUGCUUAAGUGCU 20 620
    BCL11A-116 + UUCUGCACUCAUCCCAGGCG 20 621
    BCL11A-43 + UUUCAUCUCGAUUGGUGAAG 20 622
    BCL11A-72 - UUUUUAUCGAGCACAAA 17 623
    BCL11A-41 + UUUUUCAUCUCGAUUGGUGA 20 624
  • Table 2D) provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fourth tier parameters and are selected based on presence in the coding sequence. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 2D
    4th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting domain Length NO
    BCL11A-140 - AACAGCCAUUCACCAGUGCA 20 625
    BCL11A-141 - CAACACGCACAGAACACUCA 20 626
    BCL11A-142 - AUCUACUUAGAAAGCGAACA 20 627
    BCL11A-143 - ACGGAAGUCCCCUGACCCCG 20 628
    BCL11A-144 - CGGAAGUCCCCUGACCCCGC 20 629
    BCL11A-145 - AGUCCCCUGACCCCGCGGGU 20 630
    BCL11A-146 - CCGCGGGUUGGUAUCCCUUC 20 631
    BCL11A-147 - GUUGGUAUCCCUUCAGGACU 20 632
    BCL11A-148 - CCUUCCCAGCCACCUCUCCA 20 633
    BCL11A-149 - CUUCCCAGCCACCUCUCCAU 20 634
    BCL11A-150 - UUUAACCUGCUAAGAAUACC 20 635
    BCL11A-151 - ACCAGGAUCAGUAUCGAGAG 20 636
    BCL11A-152 - UCAGUAUCGAGAGAGGCUUC 20 637
    BCL11A-153 - AUCGAGAGAGGCUUCCGGCC 20 638
    BCL11A-154 - GAGGCUUCCGGCCUGGCAGA 20 639
    BCL11A-155 - AGGCUUCCGGCCUGGCAGAA 20 640
    BCL11A-156 - UCCACCACCGAGACAUCACU 20 641
    BCL11A-157 - CCCCCACCGCAUAGAGCGCC 20 642
    BCL11A-158 - CCCCACCGCAUAGAGCGCCU 20 643
    BCL11A-159 - CCCACCGCAUAGAGCGCCUG 20 644
    BCL11A-160 - CCACCGCAUAGAGCGCCUGG 20 645
    BCL11A-161 - CCGCAUAGAGCGCCUGGGGG 20 646
    BCL11A-162 - GCGCCUGGGGGCGGAAGAGA 20 647
    BCL11A-163 - GGGGGCGGAAGAGAUGGCCC 20 648
    BCL11A-164 - AUCACCCGAGUGCCUUUGAC 20 649
    BCL11A-165 - UCACCCGAGUGCCUUUGACA 20 650
    BCL11A-166 - GUGCCUUUGACAGGGUGCUG 20 651
    BCL11A-167 - GGUGCUGCGGUUGAAUCCAA 20 652
    BCL11A-168 - GCGGUUGAAUCCAAUGGCUA 20 653
    BCL11A-169 - GGCUAUGGAGCCUCCCGCCA 20 654
    BCL11A-170 - CUCCCGCCAUGGAUUUCUCU 20 655
    BCL11A-171 - CUCUAGGAGACUUAGAGAGC 20 656
    BCL11A-172 - AGGAGACUUAGAGAGCUGGC 20 657
    BCL11A-173 - GGAGACUUAGAGAGCUGGCA 20 658
    BCL11A-174 - UCUAGCCCACCGCUGUCCCC 20 659
    BCL11A-175 - GCCCACCGCUGUCCCCAGGC 20 660
    BCL11A-176 - GCCGGCCCAGCCCUAUGCAA 20 661
    BCL11A-177 - UUACUGCAACCAUUCCAGCC 20 662
    BCL11A-178 - AGGUAGCAAGCCGCCCUUCC 20 663
    BCL11A-179 - CCCUCCUCCCUCCCAGCCCC 20 664
    BCL11A-180 - UCCAAGUCAUGCGAGUUCUG 20 665
    BCL11A-181 - GUUCAAAUUUCAGAGCAACC 20 666
    BCL11A-182 - CAAAUUUCAGAGCAACCUGG 20 667
    BCL11A-183 - AGAGCAACCUGGUGGUGCAC 20 668
    BCL11A-184 - GGUGCACCGGCGCAGCCACA 20 669
    BCL11A-185 - GUGCACCGGCGCAGCCACAC 20 670
    BCL11A-186 - GUGCGACCACGCGUGCACCC 20 671
    BCL11A-187 - GCACAAAUCGUCCCCCAUGA 20 672
    BCL11A-188 - AUGACGGUCAAGUCCGACGA 20 673
    BCL11A-189 - UCUCUCCACCGCCAGCUCCC 20 674
    BCL11A-190 - ACCGCCAGCUCCCCGGAACC 20 675
    BCL11A-191 - GGAACCCGGCACCAGCGACU 20 676
    BCL11A-192 - ACCCGGCACCAGCGACUUGG 20 677
    BCL11A-193 - CCCGGCACCAGCGACUUGGU 20 678
    BCL11A-194 - CAGCAGCGCGCUCAAGUCCG 20 679
    BCL11A-195 - CAGCGCGCUCAAGUCCGUGG 20 680
    BCL11A-196 - GAACGACCCCAACCUGAUCC 20 681
    BCL11A-197 - CCCAACCUGAUCCCGGAGAA 20 682
    BCL11A-198 - CCAACCUGAUCCCGGAGAAC 20 683
    BCL11A-199 - CAACCUGAUCCCGGAGAACG 20 684
    BCL11A-200 - GAUCCCGGAGAACGGGGACG 20 685
    BCL11A-201 - CCCGGAGAACGGGGACGAGG 20 686
    BCL11A-202 - GAACGGGGACGAGGAGGAAG 20 687
    BCL11A-203 - CGGGGACGAGGAGGAAGAGG 20 688
    BCL11A-204 - GGAGGAAGAGGAGGACGACG 20 689
    BCL11A-205 - AGAGGAGGACGACGAGGAAG 20 690
    BCL11A-206 - CGACGAGGAAGAGGAAGAAG 20 691
    BCL11A-207 - CGAGGAAGAGGAAGAAGAGG 20 692
    BCL11A-208 - AGAGGAAGAAGAGGAGGAAG 20 693
    BCL11A-209 - GGAAGAAGAGGAGGAAGAGG 20 694
    BCL11A-210 - AGAAGAGGAGGAAGAGGAGG 20 695
    BCL11A-211 - AGAGGAGGAAGAGGAGGAGG 20 696
    BCL11A-212 + UCCUCCUCGUCCCCGUUCUC 20 697
    BCL11A-213 + CCUCCUCGUCCCCGUUCUCC 20 698
    BCL11A-214 + CGUCCCCGUUCUCCGGGAUC 20 699
    BCL11A-215 + CCCGUUCUCCGGGAUCAGGU 20 700
    BCL11A-216 + CCGUUCUCCGGGAUCAGGUU 20 701
    BCL11A-217 + CGUUCUCCGGGAUCAGGUUG 20 702
    BCL11A-218 + GUCGUUCUCGCUCUUGAACU 20 703
    BCL11A-219 + GCUCUUGAACUUGGCCACCA 20 704
    BCL11A-220 + CACGGACUUGAGCGCGCUGC 20 705
    BCL11A-221 + GGCGCUGCCCACCAAGUCGC 20 706
    BCL11A-222 + GCCCACCAAGUCGCUGGUGC 20 707
    BCL11A-223 + CCCACCAAGUCGCUGGUGCC 20 708
    BCL11A-224 + AAGUCGCUGGUGCCGGGUUC 20 709
    BCL11A-225 + AGUCGCUGGUGCCGGGUUCC 20 710
    BCL11A-226 + GUCGCUGGUGCCGGGUUCCG 20 711
    BCL11A-227 + GGUGCCGGGUUCCGGGGAGC 20 712
    BCL11A-228 + GCCGGGUUCCGGGGAGCUGG 20 713
    BCL11A-229 + GGGUUCCGGGGAGCUGGCGG 20 714
    BCL11A-230 + GGCGGUGGAGAGACCGUCGU 20 715
    BCL11A-231 + GUCGUCGGACUUGACCGUCA 20 716
    BCL11A-232 + UCGUCGGACUUGACCGUCAU 20 717
    BCL11A-233 + CGUCGGACUUGACCGUCAUG 20 718
    BCL11A-234 + GUCGGACUUGACCGUCAUGG 20 719
    BCL11A-235 + UGUGCAUGUGCGUCUUCAUG 20 720
    BCL11A-236 + CAUGUGGCGCUUCAGCUUGC 20 721
    BCL11A-237 + GGCGCUUCAGCUUGCUGGCC 20 722
    BCL11A-238 + GCGCUUCAGCUUGCUGGCCU 20 723
    BCL11A-239 + UGCUGGCCUGGGUGCACGCG 20 724
    BCL11A-240 + GGGUGCACGCGUGGUCGCAC 20 725
    BCL11A-241 + GUCGCACAGGUUGCACUUGU 20 726
    BCL11A-242 + UCGCACAGGUUGCACUUGUA 20 727
    BCL11A-243 + UGUAGGGCUUCUCGCCCGUG 20 728
    BCL11A-244 + UCUCGCCCGUGUGGCUGCGC 20 729
    BCL11A-245 + GGCUGCGCCGGUGCACCACC 20 730
    BCL11A-246 + GCCGCAGAACUCGCAUGACU 20 731
    BCL11A-247 + UCGCAUGACUUGGACUUGAC 20 732
    BCL11A-248 + CGCAUGACUUGGACUUGACC 20 733
    BCL11A-249 + GCAUGACUUGGACUUGACCG 20 734
    BCL11A-250 + CAUGACUUGGACUUGACCGG 20 735
    BCL11A-251 + ACUUGGACUUGACCGGGGGC 20 736
    BCL11A-252 + CUUGGACUUGACCGGGGGCU 20 737
    BCL11A-253 + GGACUUGACCGGGGGCUGGG 20 738
    BCL11A-254 + GACUUGACCGGGGGCUGGGA 20 739
    BCL11A-255 + UUGACCGGGGGCUGGGAGGG 20 740
    BCL11A-256 + ACCGGGGGCUGGGAGGGAGG 20 741
    BCL11A-257 + CCGGGGGCUGGGAGGGAGGA 20 742
    BCL11A-258 + CGGGGGCUGGGAGGGAGGAG 20 743
    BCL11A-259 + GGGCUGGGAGGGAGGAGGGG 20 744
    BCL11A-260 + GGAGGAGGGGCGGAUUGCAG 20 745
    BCL11A-261 + GGAGGGGCGGAUUGCAGAGG 20 746
    BCL11A-262 + GAGGGGCGGAUUGCAGAGGA 20 747
    BCL11A-263 + GGGCGGAUUGCAGAGGAGGG 20 748
    BCL11A-264 + GGCGGAUUGCAGAGGAGGGA 20 749
    BCL11A-265 + GCGGAUUGCAGAGGAGGGAG 20 750
    BCL11A-266 + CGGAUUGCAGAGGAGGGAGG 20 751
    BCL11A-267 + GGAUUGCAGAGGAGGGAGGG 20 752
    BCL11A-268 + GAUUGCAGAGGAGGGAGGGG 20 753
    BCL11A-269 + GAGGGAGGGGGGGCGUCGCC 20 754
    BCL11A-270 + GAGGGGGGGCGUCGCCAGGA 20 755
    BCL11A-271 + AGGGGGGGCGUCGCCAGGAA 20 756
    BCL11A-272 + GGGGGCGUCGCCAGGAAGGG 20 757
    BCL11A-273 + AGGAAGGGCGGCUUGCUACC 20 758
    BCL11A-274 + AGGGCGGCUUGCUACCUGGC 20 759
    BCL11A-275 + GGCUUGCUACCUGGCUGGAA 20 760
    BCL11A-276 + GGUUGCAGUAACCUUUGCAU 20 761
    BCL11A-277 + GUUGCAGUAACCUUUGCAUA 20 762
    BCL11A-278 + CAGUAACCUUUGCAUAGGGC 20 763
    BCL11A-279 + AGUAACCUUUGCAUAGGGCU 20 764
    BCL11A-280 + ACCUUUGCAUAGGGCUGGGC 20 765
    BCL11A-281 + UGCAUAGGGCUGGGCCGGCC 20 766
    BCL11A-282 + GCAUAGGGCUGGGCCGGCCU 20 767
    BCL11A-283 + CAUAGGGCUGGGCCGGCCUG 20 768
    BCL11A-284 + CUGGGCCGGCCUGGGGACAG 20 769
    BCL11A-285 + GGCCGGCCUGGGGACAGCGG 20 770
    BCL11A-286 + GCCGGCCUGGGGACAGCGGU 20 771
    BCL11A-287 + AAGUCUCCUAGAGAAAUCCA 20 772
    BCL11A-288 + UCUCCUAGAGAAAUCCAUGG 20 773
    BCL11A-289 + CUCCUAGAGAAAUCCAUGGC 20 774
    BCL11A-290 + CUAGAGAAAUCCAUGGCGGG 20 775
    BCL11A-291 + GCGGGAGGCUCCAUAGCCAU 20 776
    BCL11A-292 + CAACCGCAGCACCCUGUCAA 20 777
    BCL11A-293 + AGCACCCUGUCAAAGGCACU 20 778
    BCL11A-294 + GCACCCUGUCAAAGGCACUC 20 779
    BCL11A-295 + UGUCAAAGGCACUCGGGUGA 20 780
    BCL11A-296 + GUCAAAGGCACUCGGGUGAU 20 781
    BCL11A-297 + AAAGGCACUCGGGUGAUGGG 20 782
    BCL11A-298 + CACUCGGGUGAUGGGUGGCC 20 783
    BCL11A-299 + ACUCGGGUGAUGGGUGGCCA 20 784
    BCL11A-300 + GGGCCAUCUCUUCCGCCCCC 20 785
    BCL11A-301 + CCGCCCCCAGGCGCUCUAUG 20 786
    BCL11A-302 + CCCCCAGGCGCUCUAUGCGG 20 787
    BCL11A-303 + CCCCAGGCGCUCUAUGCGGU 20 788
    BCL11A-304 + CCCAGGCGCUCUAUGCGGUG 20 789
    BCL11A-305 + CCAGGCGCUCUAUGCGGUGG 20 790
    BCL11A-306 + UGGGGGUCCAAGUGAUGUCU 20 791
    BCL11A-307 + GGGUCCAAGUGAUGUCUCGG 20 792
    BCL11A-308 + UCCAAGUGAUGUCUCGGUGG 20 793
    BCL11A-309 + GUCUCGGUGGUGGACUAAAC 20 794
    BCL11A-310 + UCUCGGUGGUGGACUAAACA 20 795
    BCL11A-311 + CUCGGUGGUGGACUAAACAG 20 796
    BCL11A-312 + UCGGUGGUGGACUAAACAGG 20 797
    BCL11A-313 + CGGUGGUGGACUAAACAGGG 20 798
    BCL11A-314 + GGUGGUGGACUAAACAGGGG 20 799
    BCL11A-315 + UGGACUAAACAGGGGGGGAG 20 800
    BCL11A-316 + GGACUAAACAGGGGGGGAGU 20 801
    BCL11A-317 + CUAAACAGGGGGGGAGUGGG 20 802
    BCL11A-318 + GUGGAAAGCGCCCUUCUGCC 20 803
    BCL11A-319 + AAAGCGCCCUUCUGCCAGGC 20 804
    BCL11A-320 + GCCUCUCUCGAUACUGAUCC 20 805
    BCL11A-321 + CUGAUCCUGGUAUUCUUAGC 20 806
    BCL11A-322 + UGGUAUUCUUAGCAGGUUAA 20 807
    BCL11A-323 + GGUAUUCUUAGCAGGUUAAA 20 808
    BCL11A-324 + GUAUUCUUAGCAGGUUAAAG 20 809
    BCL11A-325 + UGUCUGCAAUAUGAAUCCCA 20 810
    BCL11A-326 + GCAAUAUGAAUCCCAUGGAG 20 811
    BCL11A-327 + AUAUGAAUCCCAUGGAGAGG 20 812
    BCL11A-328 + GAAUCCCAUGGAGAGGUGGC 20 813
    BCL11A-329 + AAUCCCAUGGAGAGGUGGCU 20 814
    BCL11A-330 + CCAUGGAGAGGUGGCUGGGA 20 815
    BCL11A-331 + CAUUCUGCACCUAGUCCUGA 20 816
    BCL11A-332 + AUUCUGCACCUAGUCCUGAA 20 817
    BCL11A-333 + CCUGAAGGGAUACCAACCCG 20 818
    BCL11A-334 + CUGAAGGGAUACCAACCCGC 20 819
    BCL11A-335 + UGAAGGGAUACCAACCCGCG 20 820
    BCL11A-336 + GGAUACCAACCCGCGGGGUC 20 821
    BCL11A-337 + GAUACCAACCCGCGGGGUCA 20 822
    BCL11A-338 + AUACCAACCCGCGGGGUCAG 20 823
    BCL11A-339 + UUGCAAGAGAAACCAUGCAC 20 824
    BCL11A-340 + AGAAACCAUGCACUGGUGAA 20 825
    BCL11A-341 + AGUUGUACAUGUGUAGCUGC 20 826
    BCL11A-342 + GUUGUACAUGUGUAGCUGCU 20 827
    BCL11A-343 - AGCCAUUCACCAGUGCA 17 828
    BCL11A-344 - CACGCACAGAACACUCA 17 829
    BCL11A-345 - UACUUAGAAAGCGAACA 17 830
    BCL11A-346 - GAAGUCCCCUGACCCCG 17 831
    BCL11A-347 - AAGUCCCCUGACCCCGC 17 832
    BCL11A-348 - CCCCUGACCCCGCGGGU 17 833
    BCL11A-349 - CGGGUUGGUAUCCCUUC 17 834
    BCL11A-350 - GGUAUCCCUUCAGGACU 17 835
    BCL11A-351 - UCCCAGCCACCUCUCCA 17 836
    BCL11A-352 - CCCAGCCACCUCUCCAU 17 837
    BCL11A-353 - AACCUGCUAAGAAUACC 17 838
    BCL11A-354 - AGGAUCAGUAUCGAGAG 17 839
    BCL11A-355 - GUAUCGAGAGAGGCUUC 17 840
    BCL11A-356 - GAGAGAGGCUUCCGGCC 17 841
    BCL11A-357 - GCUUCCGGCCUGGCAGA 17 842
    BCL11A-358 - CUUCCGGCCUGGCAGAA 17 843
    BCL11A-359 - ACCACCGAGACAUCACU 17 844
    BCL11A-360 - CCACCGCAUAGAGCGCC 17 845
    BCL11A-361 - CACCGCAUAGAGCGCCU 17 846
    BCL11A-362 - ACCGCAUAGAGCGCCUG 17 847
    BCL11A-363 - CCGCAUAGAGCGCCUGG 17 848
    BCL11A-364 - CAUAGAGCGCCUGGGGG 17 849
    BCL11A-365 - CCUGGGGGCGGAAGAGA 17 850
    BCL11A-366 - GGCGGAAGAGAUGGCCC 17 851
    BCL11A-367 - ACCCGAGUGCCUUUGAC 17 852
    BCL11A-368 - CCCGAGUGCCUUUGACA 17 853
    BCL11A-369 - CCUUUGACAGGGUGCUG 17 854
    BCL11A-370 - GCUGCGGUUGAAUCCAA 17 855
    BCL11A-371 - GUUGAAUCCAAUGGCUA 17 856
    BCL11A-372 - UAUGGAGCCUCCCGCCA 17 857
    BCL11A-373 - CCGCCAUGGAUUUCUCU 17 858
    BCL11A-374 - UAGGAGACUUAGAGAGC 17 859
    BCL11A-375 - AGACUUAGAGAGCUGGC 17 860
    BCL11A-376 - GACUUAGAGAGCUGGCA 17 861
    BCL11A-377 - AGCCCACCGCUGUCCCC 17 862
    BCL11A-378 - CACCGCUGUCCCCAGGC 17 863
    BCL11A-379 - GGCCCAGCCCUAUGCAA 17 864
    BCL11A-380 - CUGCAACCAUUCCAGCC 17 865
    BCL11A-381 - UAGCAAGCCGCCCUUCC 17 866
    BCL11A-382 - UCCUCCCUCCCAGCCCC 17 867
    BCL11A-383 - AAGUCAUGCGAGUUCUG 17 868
    BCL11A-384 - CAAAUUUCAGAGCAACC 17 869
    BCL11A-385 - AUUUCAGAGCAACCUGG 17 870
    BCL11A-386 - GCAACCUGGUGGUGCAC 17 871
    BCL11A-387 - GCACCGGCGCAGCCACA 17 872
    BCL11A-388 - CACCGGCGCAGCCACAC 17 873
    BCL11A-389 - CGACCACGCGUGCACCC 17 874
    BCL11A-390 - CAAAUCGUCCCCCAUGA 17 875
    BCL11A-391 - ACGGUCAAGUCCGACGA 17 876
    BCL11A-392 - CUCCACCGCCAGCUCCC 17 877
    BCL11A-393 - GCCAGCUCCCCGGAACC 17 878
    BCL11A-394 - ACCCGGCACCAGCGACU 17 879
    BCL11A-395 - CGGCACCAGCGACUUGG 17 880
    BCL11A-396 - GGCACCAGCGACUUGGU 17 881
    BCL11A-397 - CAGCGCGCUCAAGUCCG 17 882
    BCL11A-398 - CGCGCUCAAGUCCGUGG 17 883
    BCL11A-399 - CGACCCCAACCUGAUCC 17 884
    BCL11A-400 - AACCUGAUCCCGGAGAA 17 885
    BCL11A-401 - ACCUGAUCCCGGAGAAC 17 886
    BCL11A-402 - CCUGAUCCCGGAGAACG 17 887
    BCL11A-403 - CCCGGAGAACGGGGACG 17 888
    BCL11A-404 - GGAGAACGGGGACGAGG 17 889
    BCL11A-405 - CGGGGACGAGGAGGAAG 17 890
    BCL11A-406 - GGACGAGGAGGAAGAGG 17 891
    BCL11A-407 - GGAAGAGGAGGACGACG 17 892
    BCL11A-408 - GGAGGACGACGAGGAAG 17 893
    BCL11A-409 - CGAGGAAGAGGAAGAAG 17 894
    BCL11A-410 - GGAAGAGGAAGAAGAGG 17 895
    BCL11A-411 - GGAAGAAGAGGAGGAAG 17 896
    BCL11A-412 - AGAAGAGGAGGAAGAGG 17 897
    BCL11A-413 - AGAGGAGGAAGAGGAGG 17 898
    BCL11A-414 - GGAGGAAGAGGAGGAGG 17 899
    BCL11A-415 + UCCUCGUCCCCGUUCUC 17 900
    BCL11A-416 + CCUCGUCCCCGUUCUCC 17 901
    BCL11A-417 + CCCCGUUCUCCGGGAUC 17 902
    BCL11A-418 + GUUCUCCGGGAUCAGGU 17 903
    BCL11A-419 + UUCUCCGGGAUCAGGUU 17 904
    BCL11A-420 + UCUCCGGGAUCAGGUUG 17 905
    BCL11A-421 + GUUCUCGCUCUUGAACU 17 906
    BCL11A-422 + CUUGAACUUGGCCACCA 17 907
    BCL11A-423 + GGACUUGAGCGCGCUGC 17 908
    BCL11A-424 + GCUGCCCACCAAGUCGC 17 909
    BCL11A-425 + CACCAAGUCGCUGGUGC 17 910
    BCL11A-426 + ACCAAGUCGCUGGUGCC 17 911
    BCL11A-427 + UCGCUGGUGCCGGGUUC 17 912
    BCL11A-428 + CGCUGGUGCCGGGUUCC 17 913
    BCL11A-429 + GCUGGUGCCGGGUUCCG 17 914
    BCL11A-430 + GCCGGGUUCCGGGGAGC 17 915
    BCL11A-431 + GGGUUCCGGGGAGCUGG 17 916
    BCL11A-432 + UUCCGGGGAGCUGGCGG 17 917
    BCL11A-433 + GGUGGAGAGACCGUCGU 17 918
    BCL11A-434 + GUCGGACUUGACCGUCA 17 919
    BCL11A-435 + UCGGACUUGACCGUCAU 17 920
    BCL11A-436 + CGGACUUGACCGUCAUG 17 921
    BCL11A-437 + GGACUUGACCGUCAUGG 17 922
    BCL11A-438 + GCAUGUGCGUCUUCAUG 17 923
    BCL11A-439 + GUGGCGCUUCAGCUUGC 17 924
    BCL11A-440 + GCUUCAGCUUGCUGGCC 17 925
    BCL11A-441 + CUUCAGCUUGCUGGCCU 17 926
    BCL11A-442 + UGGCCUGGGUGCACGCG 17 927
    BCL11A-443 + UGCACGCGUGGUCGCAC 17 928
    BCL11A-444 + GCACAGGUUGCACUUGU 17 929
    BCL11A-445 + CACAGGUUGCACUUGUA 17 930
    BCL11A-446 + AGGGCUUCUCGCCCGUG 17 931
    BCL11A-447 + CGCCCGUGUGGCUGCGC 17 932
    BCL11A-448 + UGCGCCGGUGCACCACC 17 933
    BCL11A-449 + GCAGAACUCGCAUGACU 17 934
    BCL11A-450 + CAUGACUUGGACUUGAC 17 935
    BCL11A-451 + AUGACUUGGACUUGACC 17 936
    BCL11A-452 + UGACUUGGACUUGACCG 17 937
    BCL11A-453 + GACUUGGACUUGACCGG 17 938
    BCL11A-454 + UGGACUUGACCGGGGGC 17 939
    BCL11A-455 + GGACUUGACCGGGGGCU 17 940
    BCL11A-456 + CUUGACCGGGGGCUGGG 17 941
    BCL11A-457 + UUGACCGGGGGCUGGGA 17 942
    BCL11A-458 + ACCGGGGGCUGGGAGGG 17 943
    BCL11A-459 + GGGGGCUGGGAGGGAGG 17 944
    BCL11A-460 + GGGGCUGGGAGGGAGGA 17 945
    BCL11A-461 + GGGCUGGGAGGGAGGAG 17 946
    BCL11A-462 + CUGGGAGGGAGGAGGGG 17 947
    BCL11A-463 + GGAGGGGCGGAUUGCAG 17 948
    BCL11A-464 + GGGGCGGAUUGCAGAGG 17 949
    BCL11A-465 + GGGCGGAUUGCAGAGGA 17 950
    BCL11A-466 + CGGAUUGCAGAGGAGGG 17 951
    BCL11A-467 + GGAUUGCAGAGGAGGGA 17 952
    BCL11A-468 + GAUUGCAGAGGAGGGAG 17 953
    BCL11A-469 + AUUGCAGAGGAGGGAGG 17 954
    BCL11A-470 + UUGCAGAGGAGGGAGGG 17 955
    BCL11A-471 + UGCAGAGGAGGGAGGGG 17 956
    BCL11A-472 + GGAGGGGGGGCGUCGCC 17 957
    BCL11A-473 + GGGGGGCGUCGCCAGGA 17 958
    BCL11A-474 + GGGGGCGUCGCCAGGAA 17 959
    BCL11A-475 + GGCGUCGCCAGGAAGGG 17 960
    BCL11A-476 + AAGGGCGGCUUGCUACC 17 961
    BCL11A-477 + GCGGCUUGCUACCUGGC 17 962
    BCL11A-478 + UUGCUACCUGGCUGGAA 17 963
    BCL11A-479 + UGCAGUAACCUUUGCAU 17 964
    BCL11A-480 + GCAGUAACCUUUGCAUA 17 965
    BCL11A-481 + UAACCUUUGCAUAGGGC 17 966
    BCL11A-482 + AACCUUUGCAUAGGGCU 17 967
    BCL11A-483 + UUUGCAUAGGGCUGGGC 17 968
    BCL11A-484 + AUAGGGCUGGGCCGGCC 17 969
    BCL11A-485 + UAGGGCUGGGCCGGCCU 17 970
    BCL11A-486 + AGGGCUGGGCCGGCCUG 17 971
    BCL11A-487 + GGCCGGCCUGGGGACAG 17 972
    BCL11A-488 + CGGCCUGGGGACAGCGG 17 973
    BCL11A-489 + GGCCUGGGGACAGCGGU 17 974
    BCL11A-490 + UCUCCUAGAGAAAUCCA 17 975
    BCL11A-491 + CCUAGAGAAAUCCAUGG 17 976
    BCL11A-492 + CUAGAGAAAUCCAUGGC 17 977
    BCL11A-493 + GAGAAAUCCAUGGCGGG 17 978
    BCL11A-494 + GGAGGCUCCAUAGCCAU 17 979
    BCL11A-495 + CCGCAGCACCCUGUCAA 17 980
    BCL11A-496 + ACCCUGUCAAAGGCACU 17 981
    BCL11A-497 + CCCUGUCAAAGGCACUC 17 982
    BCL11A-498 + CAAAGGCACUCGGGUGA 17 983
    BCL11A-499 + AAAGGCACUCGGGUGAU 17 984
    BCL11A-500 + GGCACUCGGGUGAUGGG 17 985
    BCL11A-501 + UCGGGUGAUGGGUGGCC 17 986
    BCL11A-502 + CGGGUGAUGGGUGGCCA 17 987
    BCL11A-503 + CCAUCUCUUCCGCCCCC 17 988
    BCL11A-504 + CCCCCAGGCGCUCUAUG 17 989
    BCL11A-505 + CCAGGCGCUCUAUGCGG 17 990
    BCL11A-506 + CAGGCGCUCUAUGCGGU 17 991
    BCL11A-507 + AGGCGCUCUAUGCGGUG 17 992
    BCL11A-508 + GGCGCUCUAUGCGGUGG 17 993
    BCL11A-509 + GGGUCCAAGUGAUGUCU 17 994
    BCL11A-510 + UCCAAGUGAUGUCUCGG 17 995
    BCL11A-511 + AAGUGAUGUCUCGGUGG 17 996
    BCL11A-512 + UCGGUGGUGGACUAAAC 17 997
    BCL11A-513 + CGGUGGUGGACUAAACA 17 998
    BCL11A-514 + GGUGGUGGACUAAACAG 17 999
    BCL11A-515 + GUGGUGGACUAAACAGG 17 1000
    BCL11A-516 + UGGUGGACUAAACAGGG 17 1001
    BCL11A-517 + GGUGGACUAAACAGGGG 17 1002
    BCL11A-518 + ACUAAACAGGGGGGGAG 17 1003
    BCL11A-519 + CUAAACAGGGGGGGAGU 17 1004
    BCL11A-520 + AACAGGGGGGGAGUGGG 17 1005
    BCL11A-521 + GAAAGCGCCCUUCUGCC 17 1006
    BCL11A-522 + GCGCCCUUCUGCCAGGC 17 1007
    BCL11A-523 + UCUCUCGAUACUGAUCC 17 1008
    BCL11A-524 + AUCCUGGUAUUCUUAGC 17 1009
    BCL11A-525 + UAUUCUUAGCAGGUUAA 17 1010
    BCL11A-526 + AUUCUUAGCAGGUUAAA 17 1011
    BCL11A-527 + UUCUUAGCAGGUUAAAG 17 1012
    BCL11A-528 + CUGCAAUAUGAAUCCCA 17 1013
    BCL11A-529 + AUAUGAAUCCCAUGGAG 17 1014
    BCL11A-530 + UGAAUCCCAUGGAGAGG 17 1015
    BCL11A-531 + UCCCAUGGAGAGGUGGC 17 1016
    BCL11A-532 + CCCAUGGAGAGGUGGCU 17 1017
    BCL11A-533 + UGGAGAGGUGGCUGGGA 17 1018
    BCL11A-534 + UCUGCACCUAGUCCUGA 17 1019
    BCL11A-535 + CUGCACCUAGUCCUGAA 17 1020
    BCL11A-536 + GAAGGGAUACCAACCCG 17 1021
    BCL11A-537 + AAGGGAUACCAACCCGC 17 1022
    BCL11A-538 + AGGGAUACCAACCCGCG 17 1023
    BCL11A-539 + UACCAACCCGCGGGGUC 17 1024
    BCL11A-540 + ACCAACCCGCGGGGUCA 17 1025
    BCL11A-541 + CCAACCCGCGGGGUCAG 17 1026
    BCL11A-542 + CAAGAGAAACCAUGCAC 17 1027
    BCL11A-543 + AACCAUGCACUGGUGAA 17 1028
    BCL11A-544 + UGUACAUGUGUAGCUGC 17 1029
    BCL11A-545 + GUACAUGUGUAGCUGCU 17 1030
    BCL11A-546 - AGAGGAGGAGGAGGAGCUGA 20 1031
    BCL11A-547 - AGGAGCUGACGGAGAGCGAG 20 1032
    BCL11A-548 - GGAGCUGACGGAGAGCGAGA 20 1033
    BCL11A-549 - GCUGACGGAGAGCGAGAGGG 20 1034
    BCL11A-550 - GAGAGCGAGAGGGUGGACUA 20 1035
    BCL11A-551 - GAGAGGGUGGACUACGGCUU 20 1036
    BCL11A-552 - AGAGGGUGGACUACGGCUUC 20 1037
    BCL11A-553 - CUACGGCUUCGGGCUGAGCC 20 1038
    BCL11A-554 - CGGCUUCGGGCUGAGCCUGG 20 1039
    BCL11A-555 - CUUCGGGCUGAGCCUGGAGG 20 1040
    BCL11A-556 - GCCACCACGAGAACAGCUCG 20 1041
    BCL11A-557 - CCACCACGAGAACAGCUCGC 20 1042
    BCL11A-558 - CACCACGAGAACAGCUCGCG 20 1043
    BCL11A-559 - CGAGAACAGCUCGCGGGGCG 20 1044
    BCL11A-560 - CAGCUCGCGGGGCGCGGUCG 20 1045
    BCL11A-561 - AGCUCGCGGGGCGCGGUCGU 20 1046
    BCL11A-562 - GCGGGGCGCGGUCGUGGGCG 20 1047
    BCL11A-563 - CGGGGCGCGGUCGUGGGCGU 20 1048
    BCL11A-564 - CGCCCUGCCCGACGUCAUGC 20 1049
    BCL11A-565 - GCCCUGCCCGACGUCAUGCA 20 1050
    BCL11A-566 - GCCCGACGUCAUGCAGGGCA 20 1051
    BCL11A-567 - CUCCAUGCAGCACUUCAGCG 20 1052
    BCL11A-568 - CUUCAGCGAGGCCUUCCACC 20 1053
    BCL11A-569 - CGAGGCCUUCCACCAGGUCC 20 1054
    BCL11A-570 - GAGGCCUUCCACCAGGUCCU 20 1055
    BCL11A-571 - CUGGGCGAGAAGCAUAAGCG 20 1056
    BCL11A-572 - GAAGCAUAAGCGCGGCCACC 20 1057
    BCL11A-573 - UAAGCGCGGCCACCUGGCCG 20 1058
    BCL11A-574 - CGGCCACCUGGCCGAGGCCG 20 1059
    BCL11A-575 - GGCCACCUGGCCGAGGCCGA 20 1060
    BCL11A-576 - UGGCCGAGGCCGAGGGCCAC 20 1061
    BCL11A-577 - GGCCGAGGCCGAGGGCCACA 20 1062
    BCL11A-578 - GGACACUUGCGACGAAGACU 20 1063
    BCL11A-579 - CACUUGCGACGAAGACUCGG 20 1064
    BCL11A-580 - UGCGACGAAGACUCGGUGGC 20 1065
    BCL11A-581 - AGACUCGGUGGCCGGCGAGU 20 1066
    BCL11A-582 - GAGUCGGACCGCAUAGACGA 20 1067
    BCL11A-583 - AUAGACGAUGGCACUGUUAA 20 1068
    BCL11A-584 - GAUGGCACUGUUAAUGGCCG 20 1069
    BCL11A-585 - UAAUGGCCGCGGCUGCUCCC 20 1070
    BCL11A-586 - AAUGGCCGCGGCUGCUCCCC 20 1071
    BCL11A-587 - CGGCUGCUCCCCGGGCGAGU 20 1072
    BCL11A-588 - CUCCCCGGGCGAGUCGGCCU 20 1073
    BCL11A-589 - UCCCCGGGCGAGUCGGCCUC 20 1074
    BCL11A-590 - CCCCGGGCGAGUCGGCCUCG 20 1075
    BCL11A-591 - CCCGGGCGAGUCGGCCUCGG 20 1076
    BCL11A-592 - CCGGGCGAGUCGGCCUCGGG 20 1077
    BCL11A-593 - CCUGUCCAAAAAGCUGCUGC 20 1078
    BCL11A-594 - CUGUCCAAAAAGCUGCUGCU 20 1079
    BCL11A-595 - UAAGCGCAUCAAGCUCGAGA 20 1080
    BCL11A-596 - GAAGGAGUUCGACCUGCCCC 20 1081
    BCL11A-597 - CCCGGCCGCGAUGCCCAACA 20 1082
    BCL11A-598 - CGGAGAACGUGUACUCGCAG 20 1083
    BCL11A-599 - GUGUACUCGCAGUGGCUCGC 20 1084
    BCL11A-600 - GCAGUGGCUCGCCGGCUACG 20 1085
    BCL11A-601 - UCGCCGGCUACGCGGCCUCC 20 1086
    BCL11A-602 - AAAGAUCCCUUCCUUAGCUU 20 1087
    BCL11A-603 - AUCGCCUUUUGCCUCCUCGU 20 1088
    BCL11A-604 - CUCCUCGUCGGAGCACUCCU 20 1089
    BCL11A-605 - UCGGAGCACUCCUCGGAGAA 20 1090
    BCL11A-606 - CGGAGCACUCCUCGGAGAAC 20 1091
    BCL11A-607 - UUGCGCUUCUCCACACCGCC 20 1092
    BCL11A-608 - UGCGCUUCUCCACACCGCCC 20 1093
    BCL11A-609 - GCGCUUCUCCACACCGCCCG 20 1094
    BCL11A-610 - CUCCACACCGCCCGGGGAGC 20 1095
    BCL11A-611 - ACACCGCCCGGGGAGCUGGA 20 1096
    BCL11A-612 - CCGCCCGGGGAGCUGGACGG 20 1097
    BCL11A-613 - CGCCCGGGGAGCUGGACGGA 20 1098
    BCL11A-614 - GGAGCUGGACGGAGGGAUCU 20 1099
    BCL11A-615 - GAGCUGGACGGAGGGAUCUC 20 1100
    BCL11A-616 - AGCUGGACGGAGGGAUCUCG 20 1101
    BCL11A-617 - GGAGGGAUCUCGGGGCGCAG 20 1102
    BCL11A-618 - GAUCUCGGGGCGCAGCGGCA 20 1103
    BCL11A-619 - AUCUCGGGGCGCAGCGGCAC 20 1104
    BCL11A-620 - GGGCGCAGCGGCACGGGAAG 20 1105
    BCL11A-621 - CGCAGCGGCACGGGAAGUGG 20 1106
    BCL11A-622 - GCAGCGGCACGGGAAGUGGA 20 1107
    BCL11A-623 - GGGAGCACGCCCCAUAUUAG 20 1108
    BCL11A-624 - CACGCCCCAUAUUAGUGGUC 20 1109
    BCL11A-625 - ACGCCCCAUAUUAGUGGUCC 20 1110
    BCL11A-626 - CCAUAUUAGUGGUCCGGGCC 20 1111
    BCL11A-627 - CAUAUUAGUGGUCCGGGCCC 20 1112
    BCL11A-628 - UUAGUGGUCCGGGCCCGGGC 20 1113
    BCL11A-629 - GGGCAGGCCCAGCUCAAAAG 20 1114
    BCL11A-630 - GGCAGGCCCAGCUCAAAAGA 20 1115
    BCL11A-631 + GCGUCUGCCCUCUUUUGAGC 20 1116
    BCL11A-632 + CGUCUGCCCUCUUUUGAGCU 20 1117
    BCL11A-633 + UCUUUUGAGCUGGGCCUGCC 20 1118
    BCL11A-634 + CUUUUGAGCUGGGCCUGCCC 20 1119
    BCL11A-635 + GAGCUGGGCCUGCCCGGGCC 20 1120
    BCL11A-636 + CCGGGCCCGGACCACUAAUA 20 1121
    BCL11A-637 + CGGGCCCGGACCACUAAUAU 20 1122
    BCL11A-638 + GGGCCCGGACCACUAAUAUG 20 1123
    BCL11A-639 + GAUCCCUCCGUCCAGCUCCC 20 1124
    BCL11A-640 + AUCCCUCCGUCCAGCUCCCC 20 1125
    BCL11A-641 + CCUCCGUCCAGCUCCCCGGG 20 1126
    BCL11A-642 + GUCCAGCUCCCCGGGCGGUG 20 1127
    BCL11A-643 + GCGCAAACUCCCGUUCUCCG 20 1128
    BCL11A-644 + CUCCGAGGAGUGCUCCGACG 20 1129
    BCL11A-645 + CGAGGAGUGCUCCGACGAGG 20 1130
    BCL11A-646 + UGCUCCGACGAGGAGGCAAA 20 1131
    BCL11A-647 + GGAGGCAAAAGGCGAUUGUC 20 1132
    BCL11A-648 + GUCUGGAGUCUCCGAAGCUA 20 1133
    BCL11A-649 + GGAGUCUCCGAAGCUAAGGA 20 1134
    BCL11A-650 + GAGUCUCCGAAGCUAAGGAA 20 1135
    BCL11A-651 + GAAGGGAUCUUUGAGCUGCC 20 1136
    BCL11A-652 + GGGAUCUUUGAGCUGCCUGG 20 1137
    BCL11A-653 + CUGCCUGGAGGCCGCGUAGC 20 1138
    BCL11A-654 + CGAGUACACGUUCUCCGUGU 20 1139
    BCL11A-655 + GAGUACACGUUCUCCGUGUU 20 1140
    BCL11A-656 + GUUCUCCGUGUUGGGCAUCG 20 1141
    BCL11A-657 + UCCGUGUUGGGCAUCGCGGC 20 1142
    BCL11A-658 + CCGUGUUGGGCAUCGCGGCC 20 1143
    BCL11A-659 + CGUGUUGGGCAUCGCGGCCG 20 1144
    BCL11A-660 + GUGUUGGGCAUCGCGGCCGG 20 1145
    BCL11A-661 + UGGGCAUCGCGGCCGGGGGC 20 1146
    BCL11A-662 + GAGCUUGAUGCGCUUAGAGA 20 1147
    BCL11A-663 + AGCUUGAUGCGCUUAGAGAA 20 1148
    BCL11A-664 + GCUUGAUGCGCUUAGAGAAG 20 1149
    BCL11A-665 + AGAGAAGGGGCUCAGCGAGC 20 1150
    BCL11A-666 + GAGAAGGGGCUCAGCGAGCU 20 1151
    BCL11A-667 + AGAAGGGGCUCAGCGAGCUG 20 1152
    BCL11A-668 + GCUGCCCAGCAGCAGCUUUU 20 1153
    BCL11A-669 + CCAGCAGCAGCUUUUUGGAC 20 1154
    BCL11A-670 + CUUUUUGGACAGGCCCCCCG 20 1155
    BCL11A-671 + CCCCCCGAGGCCGACUCGCC 20 1156
    BCL11A-672 + CCCCCGAGGCCGACUCGCCC 20 1157
    BCL11A-673 + CCCCGAGGCCGACUCGCCCG 20 1158
    BCL11A-674 + ACUCGCCCGGGGAGCAGCCG 20 1159
    BCL11A-675 + UAACAGUGCCAUCGUCUAUG 20 1160
    BCL11A-676 + GUCUAUGCGGUCCGACUCGC 20 1161
    BCL11A-677 + CUUCGUCGCAAGUGUCCCUG 20 1162
    BCL11A-678 + GCAAGUGUCCCUGUGGCCCU 20 1163
    BCL11A-679 + GUCCCUGUGGCCCUCGGCCU 20 1164
    BCL11A-680 + UGUGGCCCUCGGCCUCGGCC 20 1165
    BCL11A-681 + GGCCCUCGGCCUCGGCCAGG 20 1166
    BCL11A-682 + CGCGCUUAUGCUUCUCGCCC 20 1167
    BCL11A-683 + UAUGCUUCUCGCCCAGGACC 20 1168
    BCL11A-684 + GCUUCUCGCCCAGGACCUGG 20 1169
    BCL11A-685 + CUCGCCCAGGACCUGGUGGA 20 1170
    BCL11A-686 + GGCCUCGCUGAAGUGCUGCA 20 1171
    BCL11A-687 + CACCAUGCCCUGCAUGACGU 20 1172
    BCL11A-688 + ACCAUGCCCUGCAUGACGUC 20 1173
    BCL11A-689 + UGCCCUGCAUGACGUCGGGC 20 1174
    BCL11A-690 + GCCCUGCAUGACGUCGGGCA 20 1175
    BCL11A-691 + GCAUGACGUCGGGCAGGGCG 20 1176
    BCL11A-692 + CGCCCCGCGAGCUGUUCUCG 20 1177
    BCL11A-693 + CCCGCGAGCUGUUCUCGUGG 20 1178
    BCL11A-694 + CGUGGUGGCGCGCCGCCUCC 20 1179
    BCL11A-695 - GGAGGAAGAGGAGGAGG 17 1180
    BCL11A-696 - GGAGGAGGAGGAGCUGA 17 1181
    BCL11A-697 - AGCUGACGGAGAGCGAG 17 1182
    BCL11A-698 - GCUGACGGAGAGCGAGA 17 1183
    BCL11A-699 - GACGGAGAGCGAGAGGG 17 1184
    BCL11A-700 - AGCGAGAGGGUGGACUA 17 1185
    BCL11A-701 - AGGGUGGACUACGGCUU 17 1186
    BCL11A-702 - GGGUGGACUACGGCUUC 17 1187
    BCL11A-703 - CGGCUUCGGGCUGAGCC 17 1188
    BCL11A-704 - CUUCGGGCUGAGCCUGG 17 1189
    BCL11A-705 - CGGGCUGAGCCUGGAGG 17 1190
    BCL11A-706 - ACCACGAGAACAGCUCG 17 1191
    BCL11A-707 - CCACGAGAACAGCUCGC 17 1192
    BCL11A-708 - CACGAGAACAGCUCGCG 17 1193
    BCL11A-709 - GAACAGCUCGCGGGGCG 17 1194
    BCL11A-710 - CUCGCGGGGCGCGGUCG 17 1195
    BCL11A-711 - UCGCGGGGCGCGGUCGU 17 1196
    BCL11A-712 - GGGCGCGGUCGUGGGCG 17 1197
    BCL11A-713 - GGCGCGGUCGUGGGCGU 17 1198
    BCL11A-714 - CCUGCCCGACGUCAUGC 17 1199
    BCL11A-715 - CUGCCCGACGUCAUGCA 17 1200
    BCL11A-716 - CGACGUCAUGCAGGGCA 17 1201
    BCL11A-717 - CAUGCAGCACUUCAGCG 17 1202
    BCL11A-718 - CAGCGAGGCCUUCCACC 17 1203
    BCL11A-719 - GGCCUUCCACCAGGUCC 17 1204
    BCL11A-720 - GCCUUCCACCAGGUCCU 17 1205
    BCL11A-721 - GGCGAGAAGCAUAAGCG 17 1206
    BCL11A-722 - GCAUAAGCGCGGCCACC 17 1207
    BCL11A-723 - GCGCGGCCACCUGGCCG 17 1208
    BCL11A-724 - CCACCUGGCCGAGGCCG 17 1209
    BCL11A-725 - CACCUGGCCGAGGCCGA 17 1210
    BCL11A-726 - CCGAGGCCGAGGGCCAC 17 1211
    BCL11A-727 - CGAGGCCGAGGGCCACA 17 1212
    BCL11A-728 - CACUUGCGACGAAGACU 17 1213
    BCL11A-729 - UUGCGACGAAGACUCGG 17 1214
    BCL11A-730 - GACGAAGACUCGGUGGC 17 1215
    BCL11A-731 - CUCGGUGGCCGGCGAGU 17 1216
    BCL11A-732 - UCGGACCGCAUAGACGA 17 1217
    BCL11A-733 - GACGAUGGCACUGUUAA 17 1218
    BCL11A-734 - GGCACUGUUAAUGGCCG 17 1219
    BCL11A-735 - UGGCCGCGGCUGCUCCC 17 1220
    BCL11A-736 - GGCCGCGGCUGCUCCCC 17 1221
    BCL11A-737 - CUGCUCCCCGGGCGAGU 17 1222
    BCL11A-738 - CCCGGGCGAGUCGGCCU 17 1223
    BCL11A-739 - CCGGGCGAGUCGGCCUC 17 1224
    BCL11A-740 - CGGGCGAGUCGGCCUCG 17 1225
    BCL11A-741 - GGGCGAGUCGGCCUCGG 17 1226
    BCL11A-742 - GGCGAGUCGGCCUCGGG 17 1227
    BCL11A-743 - GUCCAAAAAGCUGCUGC 17 1228
    BCL11A-744 - UCCAAAAAGCUGCUGCU 17 1229
    BCL11A-745 - GCGCAUCAAGCUCGAGA 17 1230
    BCL11A-746 - GGAGUUCGACCUGCCCC 17 1231
    BCL11A-747 - GGCCGCGAUGCCCAACA 17 1232
    BCL11A-748 - AGAACGUGUACUCGCAG 17 1233
    BCL11A-749 - UACUCGCAGUGGCUCGC 17 1234
    BCL11A-750 - GUGGCUCGCCGGCUACG 17 1235
    BCL11A-751 - CCGGCUACGCGGCCUCC 17 1236
    BCL11A-752 - GAUCCCUUCCUUAGCUU 17 1237
    BCL11A-753 - GCCUUUUGCCUCCUCGU 17 1238
    BCL11A-754 - CUCGUCGGAGCACUCCU 17 1239
    BCL11A-755 - GAGCACUCCUCGGAGAA 17 1240
    BCL11A-756 - AGCACUCCUCGGAGAAC 17 1241
    BCL11A-757 - CGCUUCUCCACACCGCC 17 1242
    BCL11A-758 - GCUUCUCCACACCGCCC 17 1243
    BCL11A-759 - CUUCUCCACACCGCCCG 17 1244
    BCL11A-760 - CACACCGCCCGGGGAGC 17 1245
    BCL11A-761 - CCGCCCGGGGAGCUGGA 17 1246
    BCL11A-762 - CCCGGGGAGCUGGACGG 17 1247
    BCL11A-763 - CCGGGGAGCUGGACGGA 17 1248
    BCL11A-764 - GCUGGACGGAGGGAUCU 17 1249
    BCL11A-765 - CUGGACGGAGGGAUCUC 17 1250
    BCL11A-766 - UGGACGGAGGGAUCUCG 17 1251
    BCL11A-767 - GGGAUCUCGGGGCGCAG 17 1252
    BCL11A-768 - CUCGGGGCGCAGCGGCA 17 1253
    BCL11A-769 - UCGGGGCGCAGCGGCAC 17 1254
    BCL11A-770 - CGCAGCGGCACGGGAAG 17 1255
    BCL11A-771 - AGCGGCACGGGAAGUGG 17 1256
    BCL11A-772 - GCGGCACGGGAAGUGGA 17 1257
    BCL11A-773 - AGCACGCCCCAUAUUAG 17 1258
    BCL11A-774 - GCCCCAUAUUAGUGGUC 17 1259
    BCL11A-775 - CCCCAUAUUAGUGGUCC 17 1260
    BCL11A-776 - UAUUAGUGGUCCGGGCC 17 1261
    BCL11A-777 - AUUAGUGGUCCGGGCCC 17 1262
    BCL11A-778 - GUGGUCCGGGCCCGGGC 17 1263
    BCL11A-779 - CAGGCCCAGCUCAAAAG 17 1264
    BCL11A-780 - AGGCCCAGCUCAAAAGA 17 1265
    BCL11A-781 + UCUGCCCUCUUUUGAGC 17 1266
    BCL11A-782 + CUGCCCUCUUUUGAGCU 17 1267
    BCL11A-783 + UUUGAGCUGGGCCUGCC 17 1268
    BCL11A-784 + UUGAGCUGGGCCUGCCC 17 1269
    BCL11A-785 + CUGGGCCUGCCCGGGCC 17 1270
    BCL11A-786 + GGCCCGGACCACUAAUA 17 1271
    BCL11A-787 + GCCCGGACCACUAAUAU 17 1272
    BCL11A-788 + CCCGGACCACUAAUAUG 17 1273
    BCL11A-789 + CCCUCCGUCCAGCUCCC 17 1274
    BCL11A-790 + CCUCCGUCCAGCUCCCC 17 1275
    BCL11A-791 + CCGUCCAGCUCCCCGGG 17 1276
    BCL11A-792 + CAGCUCCCCGGGCGGUG 17 1277
    BCL11A-793 + CAAACUCCCGUUCUCCG 17 1278
    BCL11A-794 + CGAGGAGUGCUCCGACG 17 1279
    BCL11A-795 + GGAGUGCUCCGACGAGG 17 1280
    BCL11A-796 + UCCGACGAGGAGGCAAA 17 1281
    BCL11A-797 + GGCAAAAGGCGAUUGUC 17 1282
    BCL11A-798 + UGGAGUCUCCGAAGCUA 17 1283
    BCL11A-799 + GUCUCCGAAGCUAAGGA 17 1284
    BCL11A-800 + UCUCCGAAGCUAAGGAA 17 1285
    BCL11A-801 + GGGAUCUUUGAGCUGCC 17 1286
    BCL11A-802 + AUCUUUGAGCUGCCUGG 17 1287
    BCL11A-803 + CCUGGAGGCCGCGUAGC 17 1288
    BCL11A-804 + GUACACGUUCUCCGUGU 17 1289
    BCL11A-805 + UACACGUUCUCCGUGUU 17 1290
    BCL11A-806 + CUCCGUGUUGGGCAUCG 17 1291
    BCL11A-807 + GUGUUGGGCAUCGCGGC 17 1292
    BCL11A-808 + UGUUGGGCAUCGCGGCC 17 1293
    BCL11A-809 + GUUGGGCAUCGCGGCCG 17 1294
    BCL11A-810 + UUGGGCAUCGCGGCCGG 17 1295
    BCL11A-811 + GCAUCGCGGCCGGGGGC 17 1296
    BCL11A-812 + CUUGAUGCGCUUAGAGA 17 1297
    BCL11A-813 + UUGAUGCGCUUAGAGAA 17 1298
    BCL11A-814 + UGAUGCGCUUAGAGAAG 17 1299
    BCL11A-815 + GAAGGGGCUCAGCGAGC 17 1300
    BCL11A-816 + AAGGGGCUCAGCGAGCU 17 1301
    BCL11A-817 + AGGGGCUCAGCGAGCUG 17 1302
    BCL11A-818 + GCCCAGCAGCAGCUUUU 17 1303
    BCL11A-819 + GCAGCAGCUUUUUGGAC 17 1304
    BCL11A-820 + UUUGGACAGGCCCCCCG 17 1305
    BCL11A-821 + CCCGAGGCCGACUCGCC 17 1306
    BCL11A-822 + CCGAGGCCGACUCGCCC 17 1307
    BCL11A-823 + CGAGGCCGACUCGCCCG 17 1308
    BCL11A-824 + CGCCCGGGGAGCAGCCG 17 1309
    BCL11A-825 + CAGUGCCAUCGUCUAUG 17 1310
    BCL11A-826 + UAUGCGGUCCGACUCGC 17 1311
    BCL11A-827 + CGUCGCAAGUGUCCCUG 17 1312
    BCL11A-828 + AGUGUCCCUGUGGCCCU 17 1313
    BCL11A-829 + CCUGUGGCCCUCGGCCU 17 1314
    BCL11A-830 + GGCCCUCGGCCUCGGCC 17 1315
    BCL11A-831 + CCUCGGCCUCGGCCAGG 17 1316
    BCL11A-832 + GCUUAUGCUUCUCGCCC 17 1317
    BCL11A-833 + GCUUCUCGCCCAGGACC 17 1318
    BCL11A-834 + UCUCGCCCAGGACCUGG 17 1319
    BCL11A-835 + GCCCAGGACCUGGUGGA 17 1320
    BCL11A-836 + CUCGCUGAAGUGCUGCA 17 1321
    BCL11A-837 + CAUGCCCUGCAUGACGU 17 1322
    BCL11A-838 + AUGCCCUGCAUGACGUC 17 1323
    BCL11A-839 + CCUGCAUGACGUCGGGC 17 1324
    BCL11A-840 + CUGCAUGACGUCGGGCA 17 1325
    BCL11A-841 + UGACGUCGGGCAGGGCG 17 1326
    BCL11A-842 + CCCGCGAGCUGUUCUCG 17 1327
    BCL11A-843 + GCGAGCUGUUCUCGUGG 17 1328
    BCL11A-844 + GGUGGCGCGCCGCCUCC 17 1329
    BCL11A-845 - CCCAGAGAGCUCAAGAUGUG 20 1330
    BCL11A-846 - UCAAGAUGUGUGGCAGUUUU 20 1331
    BCL11A-847 - GAUGUGUGGCAGUUUUCGGA 20 1332
    BCL11A-848 + GCCACACAUCUUGAGCUCUC 20 1333
    BCL11A-849 + CCACACAUCUUGAGCUCUCU 20 1334
    BCL11A-850 + UCUCUGGGUACUACGCCGAA 20 1335
    BCL11A-851 + CUCUGGGUACUACGCCGAAU 20 1336
    BCL11A-852 + UCUGGGUACUACGCCGAAUG 20 1337
    BCL11A-853 + CUGGGUACUACGCCGAAUGG 20 1338
    BCL11A-854 - CUUCACACACCCCCAUU 17 1339
    BCL11A-855 - AGAGAGCUCAAGAUGUG 17 1340
    BCL11A-856 - AGAUGUGUGGCAGUUUU 17 1341
    BCL11A-857 - GUGUGGCAGUUUUCGGA 17 1342
    BCL11A-858 + ACACAUCUUGAGCUCUC 17 1343
    BCL11A-859 + CACAUCUUGAGCUCUCU 17 1344
    BCL11A-860 + CUGGGUACUACGCCGAA 17 1345
    BCL11A-861 + UGGGUACUACGCCGAAU 17 1346
    BCL11A-862 + GGGUACUACGCCGAAUG 17 1347
    BCL11A-863 + GGUACUACGCCGAAUGG 17 1348
  • Table 2E provides exemplary targeting domains for knocking out the BCL11A gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. aureus Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 2E
    S. aureus gRNA targets for BCL11A knockout
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-864 - AAACCCCAGCACUUAAGCAA 20 1349
    BCL11A-865 - AACCCCAGCACUUAAGCAAA 20 1350
    BCL11A-866 - ACCCCAGCACUUAAGCAAAC 20 1351
    BCL11A-867 - CCCCAGCACUUAAGCAA 17 1352
    BCL11A-868 - CCCAGCACUUAAGCAAA 17 1353
    BCL11A-869 - CCAGCACUUAAGCAAAC 17 1354
    BCL11A-870 + UGGGGUUUGCCUUGCUUGCG 20 1355
    BCL11A-871 + AUUCCCGUUUGCUUAAGUGC 20 1356
    BCL11A-872 + AAUUCCCGUUUGCUUAAGUG 20 1357
    BCL11A-873 + GGUUUGCCUUGCUUGCG 17 1358
    BCL11A-874 + CCCGUUUGCUUAAGUGC 17 1359
    BCL11A-875 + UCCCGUUUGCUUAAGUG 17 1360
    BCL11A-876 - UGAAGCCAUUCUUACAGAUG 20 1361
    BCL11A-877 - AUGAACCAGACCACGGCCCG 20 1362
    BCL11A-878 - UGAACCAGACCACGGCCCGU 20 1363
    BCL11A-879 - GAACCAGACCACGGCCCGUU 20 1364
    BCL11A-880 - CCACGGCCCGUUGGGAGCUC 20 1365
    BCL11A-881 - CGGCCCGUUGGGAGCUCCAG 20 1366
    BCL11A-882 - GGCCCGUUGGGAGCUCCAGA 20 1367
    BCL11A-883 - GCCCGUUGGGAGCUCCAGAA 20 1368
    BCL11A-884 - GGAUCAUGACCUCCUCACCU 20 1369
    BCL11A-885 - UCACCUGUGGGCAGUGCCAG 20 1370
    BCL11A-886 - AGUGCCAGAUGAACUUCCCA 20 1371
    BCL11A-887 - GUGCCAGAUGAACUUCCCAU 20 1372
    BCL11A-888 - UGCCAGAUGAACUUCCCAUU 20 1373
    BCL11A-889 - GCCAGAUGAACUUCCCAUUG 20 1374
    BCL11A-890 - GGGGGACAUUCUUAUUUUUA 20 1375
    BCL11A-891 - CUUAUUUUUAUCGAGCACAA 20 1376
    BCL11A-892 - UUAUUUUUAUCGAGCACAAA 20 1377
    BCL11A-893 - AUGCAAUGGCAGCCUCUGCU 20 1378
    BCL11A-894 - GCCUCUGCUUAGAAAAAGCU 20 1379
    BCL11A-895 - GCCACCUUCCCCUUCACCAA 20 1380
    BCL11A-896 - CUUCCCCUUCACCAAUCGAG 20 1381
    BCL11A-897 - UGAAAAAAGCAUCCAAUCCC 20 1382
    BCL11A-898 - GAAAAAAGCAUCCAAUCCCG 20 1383
    BCL11A-899 - GGUUGGCAUCCAGGUCACGC 20 1384
    BCL11A-900 - UUGGCAUCCAGGUCACGCCA 20 1385
    BCL11A-901 - GAUUGUUUAUCAACGUCAUC 20 1386
    BCL11A-902 - UUGUUUAUCAACGUCAUCUA 20 1387
    BCL11A-903 - UGUUUAUCAACGUCAUCUAG 20 1388
    BCL11A-904 - CUAGAGGAAUUUGCCCCAAA 20 1389
    BCL11A-905 - UAGAGGAAUUUGCCCCAAAC 20 1390
    BCL11A-906 - AGCCAUUCUUACAGAUG 17 1391
    BCL11A-907 - AACCAGACCACGGCCCG 17 1392
    BCL11A-908 - ACCAGACCACGGCCCGU 17 1393
    BCL11A-909 - CCAGACCACGGCCCGUU 17 1394
    BCL11A-910 - CGGCCCGUUGGGAGCUC 17 1395
    BCL11A-911 - CCCGUUGGGAGCUCCAG 17 1396
    BCL11A-912 - CCGUUGGGAGCUCCAGA 17 1397
    BCL11A-913 - CGUUGGGAGCUCCAGAA 17 1398
    BCL11A-914 - UCAUGACCUCCUCACCU 17 1399
    BCL11A-915 - CCUGUGGGCAGUGCCAG 17 1400
    BCL11A-916 - GCCAGAUGAACUUCCCA 17 1401
    BCL11A-917 - CCAGAUGAACUUCCCAU 17 1402
    BCL11A-918 - CAGAUGAACUUCCCAUU 17 1403
    BCL11A-919 - AGAUGAACUUCCCAUUG 17 1404
    BCL11A-920 - GGACAUUCUUAUUUUUA 17 1405
    BCL11A-921 - AUUUUUAUCGAGCACAA 17 1406
    BCL11A-922 - UUUUUAUCGAGCACAAA 17 1407
    BCL11A-923 - CAAUGGCAGCCUCUGCU 17 1408
    BCL11A-924 - UCUGCUUAGAAAAAGCU 17 1409
    BCL11A-925 - ACCUUCCCCUUCACCAA 17 1410
    BCL11A-926 - CCCCUUCACCAAUCGAG 17 1411
    BCL11A-927 - AAAAAGCAUCCAAUCCC 17 1412
    BCL11A-928 - AAAAGCAUCCAAUCCCG 17 1413
    BCL11A-929 - UGGCAUCCAGGUCACGC 17 1414
    BCL11A-930 - GCAUCCAGGUCACGCCA 17 1415
    BCL11A-931 - UGUUUAUCAACGUCAUC 17 1416
    BCL11A-932 - UUUAUCAACGUCAUCUA 17 1417
    BCL11A-933 - UUAUCAACGUCAUCUAG 17 1418
    BCL11A-934 - GAGGAAUUUGCCCCAAA 17 1419
    BCL11A-935 - AGGAAUUUGCCCCAAAC 17 1420
    BCL11A-936 + UCAUCUGUAAGAAUGGCUUC 20 1421
    BCL11A-937 + UGGUCUGGUUCAUCAUCUGU 20 1422
    BCL11A-938 + AUCCCCUUCUGGAGCUCCCA 20 1423
    BCL11A-939 + AGGAGGUCAUGAUCCCCUUC 20 1424
    BCL11A-940 + GAGGAGGUCAUGAUCCCCUU 20 1425
    BCL11A-941 + UCUGGCACUGCCCACAGGUG 20 1426
    BCL11A-942 + AUCUGGCACUGCCCACAGGU 20 1427
    BCL11A-943 + UCAUCUGGCACUGCCCACAG 20 1428
    BCL11A-944 + AAAUAAGAAUGUCCCCCAAU 20 1429
    BCL11A-945 + AAAAUAAGAAUGUCCCCCAA 20 1430
    BCL11A-946 + AAAAAUAAGAAUGUCCCCCA 20 1431
    BCL11A-947 + CGUUUGUGCUCGAUAAAAAU 20 1432
    BCL11A-948 + UAUCCACAGCUUUUUCUAAG 20 1433
    BCL11A-949 + UUUCAUCUCGAUUGGUGAAG 20 1434
    BCL11A-950 + UUUUCAUCUCGAUUGGUGAA 20 1435
    BCL11A-951 + UUUUUCAUCUCGAUUGGUGA 20 1436
    BCL11A-952 + UUUUUUCAUCUCGAUUGGUG 20 1437
    BCL11A-953 + UGCUUUUUUCAUCUCGAUUG 20 1438
    BCL11A-954 + GGAUGCCAACCUCCACGGGA 20 1439
    BCL11A-955 + GACCUGGAUGCCAACCUCCA 20 1440
    BCL11A-956 + UGACCUGGAUGCCAACCUCC 20 1441
    BCL11A-957 + UCGUCAUCCUCUGGCGUGAC 20 1442
    BCL11A-958 + CUGCUAUGUGUUCCUGUUUG 20 1443
    BCL11A-959 + CUGCUAUGUGUUCCUGUUUG 20 1444
    BCL11A-960 + UCUGUAAGAAUGGCUUC 17 1445
    BCL11A-961 + UCUGGUUCAUCAUCUGU 17 1446
    BCL11A-962 + CCCUUCUGGAGCUCCCA 17 1447
    BCL11A-963 + AGGUCAUGAUCCCCUUC 17 1448
    BCL11A-964 + GAGGUCAUGAUCCCCUU 17 1449
    BCL11A-965 + GGCACUGCCCACAGGUG 17 1450
    BCL11A-966 + UGGCACUGCCCACAGGU 17 1451
    BCL11A-967 + UCUGGCACUGCCCACAG 17 1452
    BCL11A-968 + UAAGAAUGUCCCCCAAU 17 1453
    BCL11A-969 + AUAAGAAUGUCCCCCAA 17 1454
    BCL11A-970 + AAUAAGAAUGUCCCCCA 17 1455
    BCL11A-971 + UUGUGCUCGAUAAAAAU 17 1456
    BCL11A-972 + CCACAGCUUUUUCUAAG 17 1457
    BCL11A-973 + CAUCUCGAUUGGUGAAG 17 1458
    BCL11A-974 + UCAUCUCGAUUGGUGAA 17 1459
    BCL11A-975 + UUCAUCUCGAUUGGUGA 17 1460
    BCL11A-976 + UUUCAUCUCGAUUGGUG 17 1461
    BCL11A-977 + UUUUUUCAUCUCGAUUG 17 1462
    BCL11A-978 + UGCCAACCUCCACGGGA 17 1463
    BCL11A-979 + CUGGAUGCCAACCUCCA 17 1464
    BCL11A-980 + CCUGGAUGCCAACCUCC 17 1465
    BCL11A-981 + UCAUCCUCUGGCGUGAC 17 1466
    BCL11A-982 + UGCUAUGUGUUCCUGUU 17 1467
    BCL11A-983 + CUGCUAUGUGUUCCUGU 17 1468
    BCL11A-984 - CUCCUCCCCUCGUUCUGCAC 20 1469
    BCL11A-985 - UCCUCCCCUCGUUCUGCACA 20 1470
    BCL11A-986 - UGGAGCUCUAAUCCCCACGC 20 1471
    BCL11A-987 - GGAGCUCUAAUCCCCACGCC 20 1472
    BCL11A-988 - CUCUAAUCCCCACGCCUGGG 20 1473
    BCL11A-989 - CCCCACGCCUGGGAUGAGUG 20 1474
    BCL11A-990 - UGAGUGCAGAAUAUGCCCCG 20 1475
    BCL11A-991 - CUCCCCUCGUUCUGCAC 17 1476
    BCL11A-992 - UCCCCUCGUUCUGCACA 17 1477
    BCL11A-993 - AGCUCUAAUCCCCACGC 17 1478
    BCL11A-994 - GCUCUAAUCCCCACGCC 17 1479
    BCL11A-995 - UAAUCCCCACGCCUGGG 17 1480
    BCL11A-996 - CACGCCUGGGAUGAGUG 17 1481
    BCL11A-997 - GUGCAGAAUAUGCCCCG 17 1482
    BCL11A-998 + GAGGAGAGGCCCCUCCAGUG 20 1483
    BCL11A-999 + CAUGUGCAGAACGAGGGGAG 20 1484
    BCL11A-1000 + UCCAUGUGCAGAACGAGGGG 20 1485
    BCL11A-1001 + CUCCAUGUGCAGAACGAGGG 20 1486
    BCL11A-1002 + AGCUCCAUGUGCAGAACGAG 20 1487
    BCL11A-1003 + GAGCUCCAUGUGCAGAACGA 20 1488
    BCL11A-1004 + AGAGCUCCAUGUGCAGAACG 20 1489
    BCL11A-1005 + UAGAGCUCCAUGUGCAGAAC 20 1490
    BCL11A-1006 + AUUAGAGCUCCAUGUGCAGA 20 1491
    BCL11A-1007 + GGGGAUUAGAGCUCCAUGUG 20 1492
    BCL11A-1008 + CUCAUCCCAGGCGUGGGGAU 20 1493
    BCL11A-1009 + UCUGCACUCAUCCCAGGCGU 20 1494
    BCL11A-1010 + UUCUGCACUCAUCCCAGGCG 20 1495
    BCL11A-1011 + AUUCUGCACUCAUCCCAGGC 20 1496
    BCL11A-1012 + GAGAGGCCCCUCCAGUG 17 1497
    BCL11A-1013 + GUGCAGAACGAGGGGAG 17 1498
    BCL11A-1014 + AUGUGCAGAACGAGGGG 17 1499
    BCL11A-1015 + CAUGUGCAGAACGAGGG 17 1500
    BCL11A-1016 + UCCAUGUGCAGAACGAG 17 1501
    BCL11A-1017 + CUCCAUGUGCAGAACGA 17 1502
    BCL11A-1018 + GCUCCAUGUGCAGAACG 17 1503
    BCL11A-1019 + AGCUCCAUGUGCAGAAC 17 1504
    BCL11A-1020 + AGAGCUCCAUGUGCAGA 17 1505
    BCL11A-1021 + GAUUAGAGCUCCAUGUG 17 1506
    BCL11A-1022 + AUCCCAGGCGUGGGGAU 17 1507
    BCL11A-1023 + GCACUCAUCCCAGGCGU 17 1508
    BCL11A-1024 + UGCACUCAUCCCAGGCG 17 1509
    BCL11A-1025 + CUGCACUCAUCCCAGGC 17 1510
    BCL11A-1026 - GGUUUCUCUUGCAACACGCA 20 1511
    BCL11A-1027 - GCAACACGCACAGAACACUC 20 1512
    BCL11A-1028 - GCACAGAACACUCAUGGAUU 20 1513
    BCL11A-1029 - UCAUGGAUUAAGAAUCUACU 20 1514
    BCL11A-1030 - AUUAAGAAUCUACUUAGAAA 20 1515
    BCL11A-1031 - AAUCUACUUAGAAAGCGAAC 20 1516
    BCL11A-1032 - AUCUACUUAGAAAGCGAACA 20 1517
    BCL11A-1033 - CACGGAAGUCCCCUGACCCC 20 1518
    BCL11A-1034 - CCCGCGGGUUGGUAUCCCUU 20 1519
    BCL11A-1035 - UAUCCCUUCAGGACUAGGUG 20 1520
    BCL11A-1036 - UCCUUCCCAGCCACCUCUCC 20 1521
    BCL11A-1037 - CCUUCCCAGCCACCUCUCCA 20 1522
    BCL11A-1038 - AAUAACCCCUUUAACCUGCU 20 1523
    BCL11A-1039 - CUUUAACCUGCUAAGAAUAC 20 1524
    BCL11A-1040 - UAAGAAUACCAGGAUCAGUA 20 1525
    BCL11A-1041 - AGAAUACCAGGAUCAGUAUC 20 1526
    BCL11A-1042 - AAUACCAGGAUCAGUAUCGA 20 1527
    BCL11A-1043 - GAGAGAGGCUUCCGGCCUGG 20 1528
    BCL11A-1044 - AGAGGCUUCCGGCCUGGCAG 20 1529
    BCL11A-1045 - CCCCCCUGUUUAGUCCACCA 20 1530
    BCL11A-1046 - GUCCACCACCGAGACAUCAC 20 1531
    BCL11A-1047 - UCACUUGGACCCCCACCGCA 20 1532
    BCL11A-1048 - ACCCCCACCGCAUAGAGCGC 20 1533
    BCL11A-1049 - CCCCCACCGCAUAGAGCGCC 20 1534
    BCL11A-1050 - CCCCACCGCAUAGAGCGCCU 20 1535
    BCL11A-1051 - ACCGCAUAGAGCGCCUGGGG 20 1536
    BCL11A-1052 - CCGCAUAGAGCGCCUGGGGG 20 1537
    BCL11A-1053 - CAUAGAGCGCCUGGGGGCGG 20 1538
    BCL11A-1054 - UGGCCCUGGCCACCCAUCAC 20 1539
    BCL11A-1055 - CAUCACCCGAGUGCCUUUGA 20 1540
    BCL11A-1056 - CCUUUGACAGGGUGCUGCGG 20 1541
    BCL11A-1057 - UGCGGUUGAAUCCAAUGGCU 20 1542
    BCL11A-1058 - GCGGUUGAAUCCAAUGGCUA 20 1543
    BCL11A-1059 - UGGCUAUGGAGCCUCCCGCC 20 1544
    BCL11A-1060 - CCUCCCGCCAUGGAUUUCUC 20 1545
    BCL11A-1061 - CUCCCGCCAUGGAUUUCUCU 20 1546
    BCL11A-1062 - AUGGAUUUCUCUAGGAGACU 20 1547
    BCL11A-1063 - GGAUUUCUCUAGGAGACUUA 20 1548
    BCL11A-1064 - UAGGAGACUUAGAGAGCUGG 20 1549
    BCL11A-1065 - AGGAGACUUAGAGAGCUGGC 20 1550
    BCL11A-1066 - GGAGACUUAGAGAGCUGGCA 20 1551
    BCL11A-1067 - CCCGGUCAAGUCCAAGUCAU 20 1552
    BCL11A-1068 - GCGGCAAGACGUUCAAAUUU 20 1553
    BCL11A-1069 - UGGUGCACCGGCGCAGCCAC 20 1554
    BCL11A-1070 - GCACCGGCGCAGCCACACGG 20 1555
    BCL11A-1071 - ACCGGCGCAGCCACACGGGC 20 1556
    BCL11A-1072 - CGUGCACCCAGGCCAGCAAG 20 1557
    BCL11A-1073 - CCAGCAAGCUGAAGCGCCAC 20 1558
    BCL11A-1074 - GUCUCUCCACCGCCAGCUCC 20 1559
    BCL11A-1075 - UCUCUCCACCGCCAGCUCCC 20 1560
    BCL11A-1076 - AACCCGGCACCAGCGACUUG 20 1561
    BCL11A-1077 - AGUCCGUGGUGGCCAAGUUC 20 1562
    BCL11A-1078 - CGUGGUGGCCAAGUUCAAGA 20 1563
    BCL11A-1079 - UGGUGGCCAAGUUCAAGAGC 20 1564
    BCL11A-1080 - AGAACGACCCCAACCUGAUC 20 1565
    BCL11A-1081 - GAACGACCCCAACCUGAUCC 20 1566
    BCL11A-1082 - ACGACCCCAACCUGAUCCCG 20 1567
    BCL11A-1083 - CCCCAACCUGAUCCCGGAGA 20 1568
    BCL11A-1084 - CCCAACCUGAUCCCGGAGAA 20 1569
    BCL11A-1085 - CCAACCUGAUCCCGGAGAAC 20 1570
    BCL11A-1086 - CCUGAUCCCGGAGAACGGGG 20 1571
    BCL11A-1087 - UGAUCCCGGAGAACGGGGAC 20 1572
    BCL11A-1088 - GAUCCCGGAGAACGGGGACG 20 1573
    BCL11A-1089 - UCCCGGAGAACGGGGACGAG 20 1574
    BCL11A-1090 - CCCGGAGAACGGGGACGAGG 20 1575
    BCL11A-1091 - GGAGAACGGGGACGAGGAGG 20 1576
    BCL11A-1092 - AGAACGGGGACGAGGAGGAA 20 1577
    BCL11A-1093 - GAACGGGGACGAGGAGGAAG 20 1578
    BCL11A-1094 - ACGGGGACGAGGAGGAAGAG 20 1579
    BCL11A-1095 - CGAGGAGGAAGAGGAGGACG 20 1580
    BCL11A-1096 - AGGAGGAAGAGGAGGACGAC 20 1581
    BCL11A-1097 - GGAGGAAGAGGAGGACGACG 20 1582
    BCL11A-1098 - GGAAGAGGAGGACGACGAGG 20 1583
    BCL11A-1099 - AAGAGGAGGACGACGAGGAA 20 1584
    BCL11A-1100 - AGAGGAGGACGACGAGGAAG 20 1585
    BCL11A-1101 - GGAGGACGACGAGGAAGAGG 20 1586
    BCL11A-1102 - GGACGACGAGGAAGAGGAAG 20 1587
    BCL11A-1103 - ACGACGAGGAAGAGGAAGAA 20 1588
    BCL11A-1104 - CGACGAGGAAGAGGAAGAAG 20 1589
    BCL11A-1105 - ACGAGGAAGAGGAAGAAGAG 20 1590
    BCL11A-1106 - CGAGGAAGAGGAAGAAGAGG 20 1591
    BCL11A-1107 - GGAAGAGGAAGAAGAGGAGG 20 1592
    BCL11A-1108 - AAGAGGAAGAAGAGGAGGAA 20 1593
    BCL11A-1109 - AGAGGAAGAAGAGGAGGAAG 20 1594
    BCL11A-1110 - AGGAAGAAGAGGAGGAAGAG 20 1595
    BCL11A-1111 - GGAAGAAGAGGAGGAAGAGG 20 1596
    BCL11A-1112 - AAGAAGAGGAGGAAGAGGAG 20 1597
    BCL11A-1113 - AGAAGAGGAGGAAGAGGAGG 20 1598
    BCL11A-1114 - AAGAGGAGGAAGAGGAGGAG 20 1599
    BCL11A-1115 - AGAGGAGGAAGAGGAGGAGG 20 1600
    BCL11A-1116 - AAGAGGAGGAGGAGGAGCUG 20 1601
    BCL11A-1117 - AGAGGAGGAGGAGGAGCUGA 20 1602
    BCL11A-1118 - AGGAGGAGGAGGAGCUGACG 20 1603
    BCL11A-1119 - GGAGGAGGAGCUGACGGAGA 20 1604
    BCL11A-1120 - AGGAGGAGCUGACGGAGAGC 20 1605
    BCL11A-1121 - GAGGAGCUGACGGAGAGCGA 20 1606
    BCL11A-1122 - AGCUGACGGAGAGCGAGAGG 20 1607
    BCL11A-1123 - CGAGAGGGUGGACUACGGCU 20 1608
    BCL11A-1124 - GGGUGGACUACGGCUUCGGG 20 1609
    BCL11A-1125 - ACUACGGCUUCGGGCUGAGC 20 1610
    BCL11A-1126 - CUACGGCUUCGGGCUGAGCC 20 1611
    BCL11A-1127 - CCUGGAGGCGGCGCGCCACC 20 1612
    BCL11A-1128 - UGGAGGCGGCGCGCCACCAC 20 1613
    BCL11A-1129 - CGCCACCACGAGAACAGCUC 20 1614
    BCL11A-1130 - GCCACCACGAGAACAGCUCG 20 1615
    BCL11A-1131 - ACAGCUCGCGGGGCGCGGUC 20 1616
    BCL11A-1132 - CGCGGGGCGCGGUCGUGGGC 20 1617
    BCL11A-1133 - CGCGGUCGUGGGCGUGGGCG 20 1618
    BCL11A-1134 - CGGUCGUGGGCGUGGGCGAC 20 1619
    BCL11A-1135 - GCGCCCUGCCCGACGUCAUG 20 1620
    BCL11A-1136 - CAGCUCCAUGCAGCACUUCA 20 1621
    BCL11A-1137 - GCGAGGCCUUCCACCAGGUC 20 1622
    BCL11A-1138 - GGCCUUCCACCAGGUCCUGG 20 1623
    BCL11A-1139 - CCUUCCACCAGGUCCUGGGC 20 1624
    BCL11A-1140 - GCAUAAGCGCGGCCACCUGG 20 1625
    BCL11A-1141 - GCGCGGCCACCUGGCCGAGG 20 1626
    BCL11A-1142 - GCGGCCACCUGGCCGAGGCC 20 1627
    BCL11A-1143 - CUGGCCGAGGCCGAGGGCCA 20 1628
    BCL11A-1144 - UGGCCGAGGCCGAGGGCCAC 20 1629
    BCL11A-1145 - GGGCCACAGGGACACUUGCG 20 1630
    BCL11A-1146 - CGACGAAGACUCGGUGGCCG 20 1631
    BCL11A-1147 - AAGACUCGGUGGCCGGCGAG 20 1632
    BCL11A-1148 - UUAAUGGCCGCGGCUGCUCC 20 1633
    BCL11A-1149 - UGGCCGCGGCUGCUCCCCGG 20 1634
    BCL11A-1150 - GCUCCCCGGGCGAGUCGGCC 20 1635
    BCL11A-1151 - CUCCCCGGGCGAGUCGGCCU 20 1636
    BCL11A-1152 - UCCCCGGGCGAGUCGGCCUC 20 1637
    BCL11A-1153 - CCCCGGGCGAGUCGGCCUCG 20 1638
    BCL11A-1154 - GCCUGUCCAAAAAGCUGCUG 20 1639
    BCL11A-1155 - UGCUGGGCAGCCCCAGCUCG 20 1640
    BCL11A-1156 - CUUCUCUAAGCGCAUCAAGC 20 1641
    BCL11A-1157 - UCUCUAAGCGCAUCAAGCUC 20 1642
    BCL11A-1158 - CUAAGCGCAUCAAGCUCGAG 20 1643
    BCL11A-1159 - UAAGCGCAUCAAGCUCGAGA 20 1644
    BCL11A-1160 - CCCCGGCCGCGAUGCCCAAC 20 1645
    BCL11A-1161 - CCCGGCCGCGAUGCCCAACA 20 1646
    BCL11A-1162 - CGGCCGCGAUGCCCAACACG 20 1647
    BCL11A-1163 - CAAAGAUCCCUUCCUUAGCU 20 1648
    BCL11A-1164 - AAAGAUCCCUUCCUUAGCUU 20 1649
    BCL11A-1165 - AAUCGCCUUUUGCCUCCUCG 20 1650
    BCL11A-1166 - AUCGCCUUUUGCCUCCUCGU 20 1651
    BCL11A-1167 - CCUCCUCGUCGGAGCACUCC 20 1652
    BCL11A-1168 - CUCCUCGUCGGAGCACUCCU 20 1653
    BCL11A-1169 - CCUCGUCGGAGCACUCCUCG 20 1654
    BCL11A-1170 - GUCGGAGCACUCCUCGGAGA 20 1655
    BCL11A-1171 - UCGGAGCACUCCUCGGAGAA 20 1656
    BCL11A-1172 - CGGAGCACUCCUCGGAGAAC 20 1657
    BCL11A-1173 - UUUGCGCUUCUCCACACCGC 20 1658
    BCL11A-1174 - UUGCGCUUCUCCACACCGCC 20 1659
    BCL11A-1175 - UGCGCUUCUCCACACCGCCC 20 1660
    BCL11A-1176 - GCGCUUCUCCACACCGCCCG 20 1661
    BCL11A-1177 - UCUCCACACCGCCCGGGGAG 20 1662
    BCL11A-1178 - CACACCGCCCGGGGAGCUGG 20 1663
    BCL11A-1179 - ACACCGCCCGGGGAGCUGGA 20 1664
    BCL11A-1180 - ACCGCCCGGGGAGCUGGACG 20 1665
    BCL11A-1181 - CCGCCCGGGGAGCUGGACGG 20 1666
    BCL11A-1182 - GGGAGCUGGACGGAGGGAUC 20 1667
    BCL11A-1183 - GGAGCUGGACGGAGGGAUCU 20 1668
    BCL11A-1184 - GGAUCUCGGGGCGCAGCGGC 20 1669
    BCL11A-1185 - GAUCUCGGGGCGCAGCGGCA 20 1670
    BCL11A-1186 - AUCUCGGGGCGCAGCGGCAC 20 1671
    BCL11A-1187 - GGGGCGCAGCGGCACGGGAA 20 1672
    BCL11A-1188 - GGGCGCAGCGGCACGGGAAG 20 1673
    BCL11A-1189 - GCGCAGCGGCACGGGAAGUG 20 1674
    BCL11A-1190 - CGCAGCGGCACGGGAAGUGG 20 1675
    BCL11A-1191 - GCAGCGGCACGGGAAGUGGA 20 1676
    BCL11A-1192 - GCACGCCCCAUAUUAGUGGU 20 1677
    BCL11A-1193 - CCCAUAUUAGUGGUCCGGGC 20 1678
    BCL11A-1194 - CCCGGGCAGGCCCAGCUCAA 20 1679
    BCL11A-1195 - CGGGCAGGCCCAGCUCAAAA 20 1680
    BCL11A-1196 - UUCUCUUGCAACACGCA 17 1681
    BCL11A-1197 - ACACGCACAGAACACUC 17 1682
    BCL11A-1198 - CAGAACACUCAUGGAUU 17 1683
    BCL11A-1199 - UGGAUUAAGAAUCUACU 17 1684
    BCL11A-1200 - AAGAAUCUACUUAGAAA 17 1685
    BCL11A-1201 - CUACUUAGAAAGCGAAC 17 1686
    BCL11A-1202 - UACUUAGAAAGCGAACA 17 1687
    BCL11A-1203 - GGAAGUCCCCUGACCCC 17 1688
    BCL11A-1204 - GCGGGUUGGUAUCCCUU 17 1689
    BCL11A-1205 - CCCUUCAGGACUAGGUG 17 1690
    BCL11A-1206 - UUCCCAGCCACCUCUCC 17 1691
    BCL11A-1207 - UCCCAGCCACCUCUCCA 17 1692
    BCL11A-1208 - AACCCCUUUAACCUGCU 17 1693
    BCL11A-1209 - UAACCUGCUAAGAAUAC 17 1694
    BCL11A-1210 - GAAUACCAGGAUCAGUA 17 1695
    BCL11A-1211 - AUACCAGGAUCAGUAUC 17 1696
    BCL11A-1212 - ACCAGGAUCAGUAUCGA 17 1697
    BCL11A-1213 - AGAGGCUUCCGGCCUGG 17 1698
    BCL11A-1214 - GGCUUCCGGCCUGGCAG 17 1699
    BCL11A-1215 - CCCUGUUUAGUCCACCA 17 1700
    BCL11A-1216 - CACCACCGAGACAUCAC 17 1701
    BCL11A-1217 - CUUGGACCCCCACCGCA 17 1702
    BCL11A-1218 - CCCACCGCAUAGAGCGC 17 1703
    BCL11A-1219 - CCACCGCAUAGAGCGCC 17 1704
    BCL11A-1220 - CACCGCAUAGAGCGCCU 17 1705
    BCL11A-1221 - GCAUAGAGCGCCUGGGG 17 1706
    BCL11A-1222 - CAUAGAGCGCCUGGGGG 17 1707
    BCL11A-1223 - AGAGCGCCUGGGGGCGG 17 1708
    BCL11A-1224 - CCCUGGCCACCCAUCAC 17 1709
    BCL11A-1225 - CACCCGAGUGCCUUUGA 17 1710
    BCL11A-1226 - UUGACAGGGUGCUGCGG 17 1711
    BCL11A-1227 - GGUUGAAUCCAAUGGCU 17 1712
    BCL11A-1228 - GUUGAAUCCAAUGGCUA 17 1713
    BCL11A-1229 - CUAUGGAGCCUCCCGCC 17 1714
    BCL11A-1230 - CCCGCCAUGGAUUUCUC 17 1715
    BCL11A-1231 - CCGCCAUGGAUUUCUCU 17 1716
    BCL11A-1232 - GAUUUCUCUAGGAGACU 17 1717
    BCL11A-1233 - UUUCUCUAGGAGACUUA 17 1718
    BCL11A-1234 - GAGACUUAGAGAGCUGG 17 1719
    BCL11A-1235 - AGACUUAGAGAGCUGGC 17 1720
    BCL11A-1236 - GACUUAGAGAGCUGGCA 17 1721
    BCL11A-1237 - GGUCAAGUCCAAGUCAU 17 1722
    BCL11A-1238 - GCAAGACGUUCAAAUUU 17 1723
    BCL11A-1239 - UGCACCGGCGCAGCCAC 17 1724
    BCL11A-1240 - CCGGCGCAGCCACACGG 17 1725
    BCL11A-1241 - GGCGCAGCCACACGGGC 17 1726
    BCL11A-1242 - GCACCCAGGCCAGCAAG 17 1727
    BCL11A-1243 - GCAAGCUGAAGCGCCAC 17 1728
    BCL11A-1244 - UCUCCACCGCCAGCUCC 17 1729
    BCL11A-1245 - CUCCACCGCCAGCUCCC 17 1730
    BCL11A-1246 - CCGGCACCAGCGACUUG 17 1731
    BCL11A-1247 - CCGUGGUGGCCAAGUUC 17 1732
    BCL11A-1248 - GGUGGCCAAGUUCAAGA 17 1733
    BCL11A-1249 - UGGCCAAGUUCAAGAGC 17 1734
    BCL11A-1250 - ACGACCCCAACCUGAUC 17 1735
    BCL11A-1251 - CGACCCCAACCUGAUCC 17 1736
    BCL11A-1252 - ACCCCAACCUGAUCCCG 17 1737
    BCL11A-1253 - CAACCUGAUCCCGGAGA 17 1738
    BCL11A-1254 - AACCUGAUCCCGGAGAA 17 1739
    BCL11A-1255 - ACCUGAUCCCGGAGAAC 17 1740
    BCL11A-1256 - GAUCCCGGAGAACGGGG 17 1741
    BCL11A-1257 - UCCCGGAGAACGGGGAC 17 1742
    BCL11A-1258 - CCCGGAGAACGGGGACG 17 1743
    BCL11A-1259 - CGGAGAACGGGGACGAG 17 1744
    BCL11A-1260 - GGAGAACGGGGACGAGG 17 1745
    BCL11A-1261 - GAACGGGGACGAGGAGG 17 1746
    BCL11A-1262 - ACGGGGACGAGGAGGAA 17 1747
    BCL11A-1263 - CGGGGACGAGGAGGAAG 17 1748
    BCL11A-1264 - GGGACGAGGAGGAAGAG 17 1749
    BCL11A-1265 - GGAGGAAGAGGAGGACG 17 1750
    BCL11A-1266 - AGGAAGAGGAGGACGAC 17 1751
    BCL11A-1267 - GGAAGAGGAGGACGACG 17 1752
    BCL11A-1268 - AGAGGAGGACGACGAGG 17 1753
    BCL11A-1269 - AGGAGGACGACGAGGAA 17 1754
    BCL11A-1270 - GGAGGACGACGAGGAAG 17 1755
    BCL11A-1271 - GGACGACGAGGAAGAGG 17 1756
    BCL11A-1272 - CGACGAGGAAGAGGAAG 17 1757
    BCL11A-1273 - ACGAGGAAGAGGAAGAA 17 1758
    BCL11A-1274 - CGAGGAAGAGGAAGAAG 17 1759
    BCL11A-1275 - AGGAAGAGGAAGAAGAG 17 1760
    BCL11A-1276 - GGAAGAGGAAGAAGAGG 17 1761
    BCL11A-1277 - AGAGGAAGAAGAGGAGG 17 1762
    BCL11A-1278 - AGGAAGAAGAGGAGGAA 17 1763
    BCL11A-1279 - GGAAGAAGAGGAGGAAG 17 1764
    BCL11A-1280 - AAGAAGAGGAGGAAGAG 17 1765
    BCL11A-1281 - AGAAGAGGAGGAAGAGG 17 1766
    BCL11A-1282 - AAGAGGAGGAAGAGGAG 17 1767
    BCL11A-1283 - AGAGGAGGAAGAGGAGG 17 1768
    BCL11A-1284 - AGGAGGAAGAGGAGGAG 17 1769
    BCL11A-1285 - GGAGGAAGAGGAGGAGG 17 1770
    BCL11A-1286 - AGGAGGAGGAGGAGCUG 17 1771
    BCL11A-1287 - GGAGGAGGAGGAGCUGA 17 1772
    BCL11A-1288 - AGGAGGAGGAGCUGACG 17 1773
    BCL11A-1289 - GGAGGAGCUGACGGAGA 17 1774
    BCL11A-1290 - AGGAGCUGACGGAGAGC 17 1775
    BCL11A-1291 - GAGCUGACGGAGAGCGA 17 1776
    BCL11A-1292 - UGACGGAGAGCGAGAGG 17 1777
    BCL11A-1293 - GAGGGUGGACUACGGCU 17 1778
    BCL11A-1294 - UGGACUACGGCUUCGGG 17 1779
    BCL11A-1295 - ACGGCUUCGGGCUGAGC 17 1780
    BCL11A-1296 - CGGCUUCGGGCUGAGCC 17 1781
    BCL11A-1297 - GGAGGCGGCGCGCCACC 17 1782
    BCL11A-1298 - AGGCGGCGCGCCACCAC 17 1783
    BCL11A-1299 - CACCACGAGAACAGCUC 17 1784
    BCL11A-1300 - ACCACGAGAACAGCUCG 17 1785
    BCL11A-1301 - GCUCGCGGGGCGCGGUC 17 1786
    BCL11A-1302 - GGGGCGCGGUCGUGGGC 17 1787
    BCL11A-1303 - GGUCGUGGGCGUGGGCG 17 1788
    BCL11A-1304 - UCGUGGGCGUGGGCGAC 17 1789
    BCL11A-1305 - CCCUGCCCGACGUCAUG 17 1790
    BCL11A-1306 - CUCCAUGCAGCACUUCA 17 1791
    BCL11A-1307 - AGGCCUUCCACCAGGUC 17 1792
    BCL11A-1308 - CUUCCACCAGGUCCUGG 17 1793
    BCL11A-1309 - UCCACCAGGUCCUGGGC 17 1794
    BCL11A-1310 - UAAGCGCGGCCACCUGG 17 1795
    BCL11A-1311 - CGGCCACCUGGCCGAGG 17 1796
    BCL11A-1312 - GCCACCUGGCCGAGGCC 17 1797
    BCL11A-1313 - GCCGAGGCCGAGGGCCA 17 1798
    BCL11A-1314 - CCGAGGCCGAGGGCCAC 17 1799
    BCL11A-1315 - CCACAGGGACACUUGCG 17 1800
    BCL11A-1316 - CGAAGACUCGGUGGCCG 17 1801
    BCL11A-1317 - ACUCGGUGGCCGGCGAG 17 1802
    BCL11A-1318 - AUGGCCGCGGCUGCUCC 17 1803
    BCL11A-1319 - CCGCGGCUGCUCCCCGG 17 1804
    BCL11A-1320 - CCCCGGGCGAGUCGGCC 17 1805
    BCL11A-1321 - CCCGGGCGAGUCGGCCU 17 1806
    BCL11A-1322 - CCGGGCGAGUCGGCCUC 17 1807
    BCL11A-1323 - CGGGCGAGUCGGCCUCG 17 1808
    BCL11A-1324 - UGUCCAAAAAGCUGCUG 17 1809
    BCL11A-1325 - UGGGCAGCCCCAGCUCG 17 1810
    BCL11A-1326 - CUCUAAGCGCAUCAAGC 17 1811
    BCL11A-1327 - CUAAGCGCAUCAAGCUC 17 1812
    BCL11A-1328 - AGCGCAUCAAGCUCGAG 17 1813
    BCL11A-1329 - GCGCAUCAAGCUCGAGA 17 1814
    BCL11A-1330 - CGGCCGCGAUGCCCAAC 17 1815
    BCL11A-1331 - GGCCGCGAUGCCCAACA 17 1816
    BCL11A-1332 - CCGCGAUGCCCAACACG 17 1817
    BCL11A-1333 - AGAUCCCUUCCUUAGCU 17 1818
    BCL11A-1334 - GAUCCCUUCCUUAGCUU 17 1819
    BCL11A-1335 - CGCCUUUUGCCUCCUCG 17 1820
    BCL11A-1336 - GCCUUUUGCCUCCUCGU 17 1821
    BCL11A-1337 - CCUCGUCGGAGCACUCC 17 1822
    BCL11A-1338 - CUCGUCGGAGCACUCCU 17 1823
    BCL11A-1339 - CGUCGGAGCACUCCUCG 17 1824
    BCL11A-1340 - GGAGCACUCCUCGGAGA 17 1825
    BCL11A-1341 - GAGCACUCCUCGGAGAA 17 1826
    BCL11A-1342 - AGCACUCCUCGGAGAAC 17 1827
    BCL11A-1343 - GCGCUUCUCCACACCGC 17 1828
    BCL11A-1344 - CGCUUCUCCACACCGCC 17 1829
    BCL11A-1345 - GCUUCUCCACACCGCCC 17 1830
    BCL11A-1346 - CUUCUCCACACCGCCCG 17 1831
    BCL11A-1347 - CCACACCGCCCGGGGAG 17 1832
    BCL11A-1348 - ACCGCCCGGGGAGCUGG 17 1833
    BCL11A-1349 - CCGCCCGGGGAGCUGGA 17 1834
    BCL11A-1350 - GCCCGGGGAGCUGGACG 17 1835
    BCL11A-1351 - CCCGGGGAGCUGGACGG 17 1836
    BCL11A-1352 - AGCUGGACGGAGGGAUC 17 1837
    BCL11A-1353 - GCUGGACGGAGGGAUCU 17 1838
    BCL11A-1354 - UCUCGGGGCGCAGCGGC 17 1839
    BCL11A-1355 - CUCGGGGCGCAGCGGCA 17 1840
    BCL11A-1356 - UCGGGGCGCAGCGGCAC 17 1841
    BCL11A-1357 - GCGCAGCGGCACGGGAA 17 1842
    BCL11A-1358 - CGCAGCGGCACGGGAAG 17 1843
    BCL11A-1359 - CAGCGGCACGGGAAGUG 17 1844
    BCL11A-1360 - AGCGGCACGGGAAGUGG 17 1845
    BCL11A-1361 - GCGGCACGGGAAGUGGA 17 1846
    BCL11A-1362 - CGCCCCAUAUUAGUGGU 17 1847
    BCL11A-1363 - AUAUUAGUGGUCCGGGC 17 1848
    BCL11A-1364 - GGGCAGGCCCAGCUCAA 17 1849
    BCL11A-1365 - GCAGGCCCAGCUCAAAA 17 1850
    BCL11A-1366 + AAGUUGUACAUGUGUAGCUG 20 1851
    BCL11A-1367 + GCAAGAGAAACCAUGCACUG 20 1852
    BCL11A-1368 + GUGUUCUGUGCGUGUUGCAA 20 1853
    BCL11A-1369 + GAGUGUUCUGUGCGUGUUGC 20 1854
    BCL11A-1370 + UCUAAGUAGAUUCUUAAUCC 20 1855
    BCL11A-1371 + GAUACCAACCCGCGGGGUCA 20 1856
    BCL11A-1372 + GGAUACCAACCCGCGGGGUC 20 1857
    BCL11A-1373 + GGGAUACCAACCCGCGGGGU 20 1858
    BCL11A-1374 + CCUGAAGGGAUACCAACCCG 20 1859
    BCL11A-1375 + UCCUGAAGGGAUACCAACCC 20 1860
    BCL11A-1376 + CAUUCUGCACCUAGUCCUGA 20 1861
    BCL11A-1377 + ACAUUCUGCACCUAGUCCUG 20 1862
    BCL11A-1378 + AGGACAUUCUGCACCUAGUC 20 1863
    BCL11A-1379 + CCCAUGGAGAGGUGGCUGGG 20 1864
    BCL11A-1380 + AAUCCCAUGGAGAGGUGGCU 20 1865
    BCL11A-1381 + GAAUCCCAUGGAGAGGUGGC 20 1866
    BCL11A-1382 + UGAAUCCCAUGGAGAGGUGG 20 1867
    BCL11A-1383 + UCUGCAAUAUGAAUCCCAUG 20 1868
    BCL11A-1384 + UGUCUGCAAUAUGAAUCCCA 20 1869
    BCL11A-1385 + UUGUCUGCAAUAUGAAUCCC 20 1870
    BCL11A-1386 + AAGGGGUUAUUGUCUGCAAU 20 1871
    BCL11A-1387 + UGGUAUUCUUAGCAGGUUAA 20 1872
    BCL11A-1388 + CUGGUAUUCUUAGCAGGUUA 20 1873
    BCL11A-1389 + AAAGCGCCCUUCUGCCAGGC 20 1874
    BCL11A-1390 + GAAAGCGCCCUUCUGCCAGG 20 1875
    BCL11A-1391 + CUAAACAGGGGGGGAGUGGG 20 1876
    BCL11A-1392 + ACUAAACAGGGGGGGAGUGG 20 1877
    BCL11A-1393 + GUGGACUAAACAGGGGGGGA 20 1878
    BCL11A-1394 + GGUGGUGGACUAAACAGGGG 20 1879
    BCL11A-1395 + CGGUGGUGGACUAAACAGGG 20 1880
    BCL11A-1396 + UCGGUGGUGGACUAAACAGG 20 1881
    BCL11A-1397 + CUCGGUGGUGGACUAAACAG 20 1882
    BCL11A-1398 + UCUCGGUGGUGGACUAAACA 20 1883
    BCL11A-1399 + GUCUCGGUGGUGGACUAAAC 20 1884
    BCL11A-1400 + UGUCUCGGUGGUGGACUAAA 20 1885
    BCL11A-1401 + GUCCAAGUGAUGUCUCGGUG 20 1886
    BCL11A-1402 + CCCCAGGCGCUCUAUGCGGU 20 1887
    BCL11A-1403 + CCCCCAGGCGCUCUAUGCGG 20 1888
    BCL11A-1404 + GCCCCCAGGCGCUCUAUGCG 20 1889
    BCL11A-1405 + GCACUCGGGUGAUGGGUGGC 20 1890
    BCL11A-1406 + CUGUCAAAGGCACUCGGGUG 20 1891
    BCL11A-1407 + CAGCACCCUGUCAAAGGCAC 20 1892
    BCL11A-1408 + GGCGGGAGGCUCCAUAGCCA 20 1893
    BCL11A-1409 + CUCCUAGAGAAAUCCAUGGC 20 1894
    BCL11A-1410 + UCUCCUAGAGAAAUCCAUGG 20 1895
    BCL11A-1411 + GUCUCCUAGAGAAAUCCAUG 20 1896
    BCL11A-1412 + CCAGCUCUCUAAGUCUCCUA 20 1897
    BCL11A-1413 + UGCCAGCUCUCUAAGUCUCC 20 1898
    BCL11A-1414 + GGGCCGGCCUGGGGACAGCG 20 1899
    BCL11A-1415 + GCAUAGGGCUGGGCCGGCCU 20 1900
    BCL11A-1416 + UGCAUAGGGCUGGGCCGGCC 20 1901
    BCL11A-1417 + UUGCAUAGGGCUGGGCCGGC 20 1902
    BCL11A-1418 + GCAGUAACCUUUGCAUAGGG 20 1903
    BCL11A-1419 + UGGUUGCAGUAACCUUUGCA 20 1904
    BCL11A-1420 + AGGGCGGCUUGCUACCUGGC 20 1905
    BCL11A-1421 + AAGGGCGGCUUGCUACCUGG 20 1906
    BCL11A-1422 + GGAGGGGGGGCGUCGCCAGG 20 1907
    BCL11A-1423 + GAGGGAGGGGGGGCGUCGCC 20 1908
    BCL11A-1424 + GGAGGGAGGGGGGGCGUCGC 20 1909
    BCL11A-1425 + CGGAUUGCAGAGGAGGGAGG 20 1910
    BCL11A-1426 + GCGGAUUGCAGAGGAGGGAG 20 1911
    BCL11A-1427 + GGCGGAUUGCAGAGGAGGGA 20 1912
    BCL11A-1428 + GGGCGGAUUGCAGAGGAGGG 20 1913
    BCL11A-1429 + GGGGCGGAUUGCAGAGGAGG 20 1914
    BCL11A-1430 + GAGGGGCGGAUUGCAGAGGA 20 1915
    BCL11A-1431 + GGAGGGGCGGAUUGCAGAGG 20 1916
    BCL11A-1432 + AGGAGGGGCGGAUUGCAGAG 20 1917
    BCL11A-1433 + GGAGGAGGGGCGGAUUGCAG 20 1918
    BCL11A-1434 + GGGAGGAGGGGCGGAUUGCA 20 1919
    BCL11A-1435 + GAGGGAGGAGGGGCGGAUUG 20 1920
    BCL11A-1436 + GGGGCUGGGAGGGAGGAGGG 20 1921
    BCL11A-1437 + ACCGGGGGCUGGGAGGGAGG 20 1922
    BCL11A-1438 + GACCGGGGGCUGGGAGGGAG 20 1923
    BCL11A-1439 + UUGACCGGGGGCUGGGAGGG 20 1924
    BCL11A-1440 + CUUGACCGGGGGCUGGGAGG 20 1925
    BCL11A-1441 + GACUUGACCGGGGGCUGGGA 20 1926
    BCL11A-1442 + GGACUUGACCGGGGGCUGGG 20 1927
    BCL11A-1443 + UGGACUUGACCGGGGGCUGG 20 1928
    BCL11A-1444 + CUUGGACUUGACCGGGGGCU 20 1929
    BCL11A-1445 + ACUUGGACUUGACCGGGGGC 20 1930
    BCL11A-1446 + GACUUGGACUUGACCGGGGG 20 1931
    BCL11A-1447 + CGCAUGACUUGGACUUGACC 20 1932
    BCL11A-1448 + UCGCAUGACUUGGACUUGAC 20 1933
    BCL11A-1449 + CUCGCAUGACUUGGACUUGA 20 1934
    BCL11A-1450 + UGCCGCAGAACUCGCAUGAC 20 1935
    BCL11A-1451 + GAAAUUUGAACGUCUUGCCG 20 1936
    BCL11A-1452 + CCACCAGGUUGCUCUGAAAU 20 1937
    BCL11A-1453 + CGGUGCACCACCAGGUUGCU 20 1938
    BCL11A-1454 + GGUCGCACAGGUUGCACUUG 20 1939
    BCL11A-1455 + UGGCGCUUCAGCUUGCUGGC 20 1940
    BCL11A-1456 + CGUCGGACUUGACCGUCAUG 20 1941
    BCL11A-1457 + UCGUCGGACUUGACCGUCAU 20 1942
    BCL11A-1458 + GUCGUCGGACUUGACCGUCA 20 1943
    BCL11A-1459 + CGUCGUCGGACUUGACCGUC 20 1944
    BCL11A-1460 + UGGCGGUGGAGAGACCGUCG 20 1945
    BCL11A-1461 + GUUCCGGGGAGCUGGCGGUG 20 1946
    BCL11A-1462 + GGGUUCCGGGGAGCUGGCGG 20 1947
    BCL11A-1463 + CGGGUUCCGGGGAGCUGGCG 20 1948
    BCL11A-1464 + GUCGCUGGUGCCGGGUUCCG 20 1949
    BCL11A-1465 + AGUCGCUGGUGCCGGGUUCC 20 1950
    BCL11A-1466 + AAGUCGCUGGUGCCGGGUUC 20 1951
    BCL11A-1467 + CAAGUCGCUGGUGCCGGGUU 20 1952
    BCL11A-1468 + UGCCCACCAAGUCGCUGGUG 20 1953
    BCL11A-1469 + UGAACUUGGCCACCACGGAC 20 1954
    BCL11A-1470 + CGCUCUUGAACUUGGCCACC 20 1955
    BCL11A-1471 + GGUUGGGGUCGUUCUCGCUC 20 1956
    BCL11A-1472 + CCCGUUCUCCGGGAUCAGGU 20 1957
    BCL11A-1473 + CCCCGUUCUCCGGGAUCAGG 20 1958
    BCL11A-1474 + UCCUCCUCGUCCCCGUUCUC 20 1959
    BCL11A-1475 + UUCCUCCUCGUCCCCGUUCU 20 1960
    BCL11A-1476 + GCGCCGCCUCCAGGCUCAGC 20 1961
    BCL11A-1477 + CACGCCCACGACCGCGCCCC 20 1962
    BCL11A-1478 + AUGCCCUGCAUGACGUCGGG 20 1963
    BCL11A-1479 + GCACCAUGCCCUGCAUGACG 20 1964
    BCL11A-1480 + CGCUGAAGUGCUGCAUGGAG 20 1965
    BCL11A-1481 + GGCCUCGCUGAAGUGCUGCA 20 1966
    BCL11A-1482 + AGGCCUCGCUGAAGUGCUGC 20 1967
    BCL11A-1483 + GGACCUGGUGGAAGGCCUCG 20 1968
    BCL11A-1484 + GCUUCUCGCCCAGGACCUGG 20 1969
    BCL11A-1485 + UGCUUCUCGCCCAGGACCUG 20 1970
    BCL11A-1486 + CCGCGCUUAUGCUUCUCGCC 20 1971
    BCL11A-1487 + GCGGUCCGACUCGCCGGCCA 20 1972
    BCL11A-1488 + CCCCGAGGCCGACUCGCCCG 20 1973
    BCL11A-1489 + CCCCCGAGGCCGACUCGCCC 20 1974
    BCL11A-1490 + CCCCCCGAGGCCGACUCGCC 20 1975
    BCL11A-1491 + GCCCCCCGAGGCCGACUCGC 20 1976
    BCL11A-1492 + CAGCUUUUUGGACAGGCCCC 20 1977
    BCL11A-1493 + GGCUGCCCAGCAGCAGCUUU 20 1978
    BCL11A-1494 + AGAGAAGGGGCUCAGCGAGC 20 1979
    BCL11A-1495 + UAGAGAAGGGGCUCAGCGAG 20 1980
    BCL11A-1496 + GCGCUUAGAGAAGGGGCUCA 20 1981
    BCL11A-1497 + GAGCUUGAUGCGCUUAGAGA 20 1982
    BCL11A-1498 + CGAGCUUGAUGCGCUUAGAG 20 1983
    BCL11A-1499 + UCUCGAGCUUGAUGCGCUUA 20 1984
    BCL11A-1500 + CUUCUCGAGCUUGAUGCGCU 20 1985
    BCL11A-1501 + GGGGCAGGUCGAACUCCUUC 20 1986
    BCL11A-1502 + GCAUCGCGGCCGGGGGCAGG 20 1987
    BCL11A-1503 + CCGUGUUGGGCAUCGCGGCC 20 1988
    BCL11A-1504 + UCCGUGUUGGGCAUCGCGGC 20 1989
    BCL11A-1505 + CUCCGUGUUGGGCAUCGCGG 20 1990
    BCL11A-1506 + GCGAGUACACGUUCUCCGUG 20 1991
    BCL11A-1507 + CGCGUAGCCGGCGAGCCACU 20 1992
    BCL11A-1508 + GCCUGGAGGCCGCGUAGCCG 20 1993
    BCL11A-1509 + GAAGGGAUCUUUGAGCUGCC 20 1994
    BCL11A-1510 + GGAAGGGAUCUUUGAGCUGC 20 1995
    BCL11A-1511 + CGAAGCUAAGGAAGGGAUCU 20 1996
    BCL11A-1512 + GGAGUCUCCGAAGCUAAGGA 20 1997
    BCL11A-1513 + UGGAGUCUCCGAAGCUAAGG 20 1998
    BCL11A-1514 + GUCUGGAGUCUCCGAAGCUA 20 1999
    BCL11A-1515 + UGUCUGGAGUCUCCGAAGCU 20 2000
    BCL11A-1516 + AAGGCGAUUGUCUGGAGUCU 20 2001
    BCL11A-1517 + GGAGGCAAAAGGCGAUUGUC 20 2002
    BCL11A-1518 + AGGAGGCAAAAGGCGAUUGU 20 2003
    BCL11A-1519 + CUCCGAGGAGUGCUCCGACG 20 2004
    BCL11A-1520 + UCUCCGAGGAGUGCUCCGAC 20 2005
    BCL11A-1521 + GUUCUCCGAGGAGUGCUCCG 20 2006
    BCL11A-1522 + GCGCAAACUCCCGUUCUCCG 20 2007
    BCL11A-1523 + AGCGCAAACUCCCGUUCUCC 20 2008
    BCL11A-1524 + GAAGCGCAAACUCCCGUUCU 20 2009
    BCL11A-1525 + CCAGCUCCCCGGGCGGUGUG 20 2010
    BCL11A-1526 + GUCCAGCUCCCCGGGCGGUG 20 2011
    BCL11A-1527 + CGUCCAGCUCCCCGGGCGGU 20 2012
    BCL11A-1528 + AGAUCCCUCCGUCCAGCUCC 20 2013
    BCL11A-1529 + ACUUCCCGUGCCGCUGCGCC 20 2014
    BCL11A-1530 + CCGGGCCCGGACCACUAAUA 20 2015
    BCL11A-1531 + CCCGGGCCCGGACCACUAAU 20 2016
    BCL11A-1532 + UGAGCUGGGCCUGCCCGGGC 20 2017
    BCL11A-1533 + CUCUUUUGAGCUGGGCCUGC 20 2018
    BCL11A-1534 + UGCGUCUGCCCUCUUUUGAG 20 2019
    BCL11A-1535 + GUCGCUGCGUCUGCCCUCUU 20 2020
    BCL11A-1536 + UUGUACAUGUGUAGCUG 17 2021
    BCL11A-1537 + AGAGAAACCAUGCACUG 17 2022
    BCL11A-1538 + UUCUGUGCGUGUUGCAA 17 2023
    BCL11A-1539 + UGUUCUGUGCGUGUUGC 17 2024
    BCL11A-1540 + AAGUAGAUUCUUAAUCC 17 2025
    BCL11A-1541 + ACCAACCCGCGGGGUCA 17 2026
    BCL11A-1542 + UACCAACCCGCGGGGUC 17 2027
    BCL11A-1543 + AUACCAACCCGCGGGGU 17 2028
    BCL11A-1544 + GAAGGGAUACCAACCCG 17 2029
    BCL11A-1545 + UGAAGGGAUACCAACCC 17 2030
    BCL11A-1546 + UCUGCACCUAGUCCUGA 17 2031
    BCL11A-1547 + UUCUGCACCUAGUCCUG 17 2032
    BCL11A-1548 + ACAUUCUGCACCUAGUC 17 2033
    BCL11A-1549 + AUGGAGAGGUGGCUGGG 17 2034
    BCL11A-1550 + CCCAUGGAGAGGUGGCU 17 2035
    BCL11A-1551 + UCCCAUGGAGAGGUGGC 17 2036
    BCL11A-1552 + AUCCCAUGGAGAGGUGG 17 2037
    BCL11A-1553 + GCAAUAUGAAUCCCAUG 17 2038
    BCL11A-1554 + CUGCAAUAUGAAUCCCA 17 2039
    BCL11A-1555 + UCUGCAAUAUGAAUCCC 17 2040
    BCL11A-1556 + GGGUUAUUGUCUGCAAU 17 2041
    BCL11A-1557 + UAUUCUUAGCAGGUUAA 17 2042
    BCL11A-1558 + GUAUUCUUAGCAGGUUA 17 2043
    BCL11A-1559 + GCGCCCUUCUGCCAGGC 17 2044
    BCL11A-1560 + AGCGCCCUUCUGCCAGG 17 2045
    BCL11A-1561 + AACAGGGGGGGAGUGGG 17 2046
    BCL11A-1562 + AAACAGGGGGGGAGUGG 17 2047
    BCL11A-1563 + GACUAAACAGGGGGGGA 17 2048
    BCL11A-1564 + GGUGGACUAAACAGGGG 17 2049
    BCL11A-1565 + UGGUGGACUAAACAGGG 17 2050
    BCL11A-1566 + GUGGUGGACUAAACAGG 17 2051
    BCL11A-1567 + GGUGGUGGACUAAACAG 17 2052
    BCL11A-1568 + CGGUGGUGGACUAAACA 17 2053
    BCL11A-1569 + UCGGUGGUGGACUAAAC 17 2054
    BCL11A-1570 + CUCGGUGGUGGACUAAA 17 2055
    BCL11A-1571 + CAAGUGAUGUCUCGGUG 17 2056
    BCL11A-1572 + CAGGCGCUCUAUGCGGU 17 2057
    BCL11A-1573 + CCAGGCGCUCUAUGCGG 17 2058
    BCL11A-1574 + CCCAGGCGCUCUAUGCG 17 2059
    BCL11A-1575 + CUCGGGUGAUGGGUGGC 17 2060
    BCL11A-1576 + UCAAAGGCACUCGGGUG 17 2061
    BCL11A-1577 + CACCCUGUCAAAGGCAC 17 2062
    BCL11A-1578 + GGGAGGCUCCAUAGCCA 17 2063
    BCL11A-1579 + CUAGAGAAAUCCAUGGC 17 2064
    BCL11A-1580 + CCUAGAGAAAUCCAUGG 17 2065
    BCL11A-1581 + UCCUAGAGAAAUCCAUG 17 2066
    BCL11A-1582 + GCUCUCUAAGUCUCCUA 17 2067
    BCL11A-1583 + CAGCUCUCUAAGUCUCC 17 2068
    BCL11A-1584 + CCGGCCUGGGGACAGCG 17 2069
    BCL11A-1585 + UAGGGCUGGGCCGGCCU 17 2070
    BCL11A-1586 + AUAGGGCUGGGCCGGCC 17 2071
    BCL11A-1587 + CAUAGGGCUGGGCCGGC 17 2072
    BCL11A-1588 + GUAACCUUUGCAUAGGG 17 2073
    BCL11A-1589 + UUGCAGUAACCUUUGCA 17 2074
    BCL11A-1590 + GCGGCUUGCUACCUGGC 17 2075
    BCL11A-1591 + GGCGGCUUGCUACCUGG 17 2076
    BCL11A-1592 + GGGGGGGCGUCGCCAGG 17 2077
    BCL11A-1593 + GGAGGGGGGGCGUCGCC 17 2078
    BCL11A-1594 + GGGAGGGGGGGCGUCGC 17 2079
    BCL11A-1595 + AUUGCAGAGGAGGGAGG 17 2080
    BCL11A-1596 + GAUUGCAGAGGAGGGAG 17 2081
    BCL11A-1597 + GGAUUGCAGAGGAGGGA 17 2082
    BCL11A-1598 + CGGAUUGCAGAGGAGGG 17 2083
    BCL11A-1599 + GCGGAUUGCAGAGGAGG 17 2084
    BCL11A-1600 + GGGCGGAUUGCAGAGGA 17 2085
    BCL11A-1601 + GGGGCGGAUUGCAGAGG 17 2086
    BCL11A-1602 + AGGGGCGGAUUGCAGAG 17 2087
    BCL11A-1603 + GGAGGGGCGGAUUGCAG 17 2088
    BCL11A-1604 + AGGAGGGGCGGAUUGCA 17 2089
    BCL11A-1605 + GGAGGAGGGGCGGAUUG 17 2090
    BCL11A-1606 + GCUGGGAGGGAGGAGGG 17 2091
    BCL11A-1607 + GGGGGCUGGGAGGGAGG 17 2092
    BCL11A-1608 + CGGGGGCUGGGAGGGAG 17 2093
    BCL11A-1609 + ACCGGGGGCUGGGAGGG 17 2094
    BCL11A-1610 + GACCGGGGGCUGGGAGG 17 2095
    BCL11A-1611 + UUGACCGGGGGCUGGGA 17 2096
    BCL11A-1612 + CUUGACCGGGGGCUGGG 17 2097
    BCL11A-1613 + ACUUGACCGGGGGCUGG 17 2098
    BCL11A-1614 + GGACUUGACCGGGGGCU 17 2099
    BCL11A-1615 + UGGACUUGACCGGGGGC 17 2100
    BCL11A-1616 + UUGGACUUGACCGGGGG 17 2101
    BCL11A-1617 + AUGACUUGGACUUGACC 17 2102
    BCL11A-1618 + CAUGACUUGGACUUGAC 17 2103
    BCL11A-1619 + GCAUGACUUGGACUUGA 17 2104
    BCL11A-1620 + CGCAGAACUCGCAUGAC 17 2105
    BCL11A-1621 + AUUUGAACGUCUUGCCG 17 2106
    BCL11A-1622 + CCAGGUUGCUCUGAAAU 17 2107
    BCL11A-1623 + UGCACCACCAGGUUGCU 17 2108
    BCL11A-1624 + CGCACAGGUUGCACUUG 17 2109
    BCL11A-1625 + CGCUUCAGCUUGCUGGC 17 2110
    BCL11A-1626 + CGGACUUGACCGUCAUG 17 2111
    BCL11A-1627 + UCGGACUUGACCGUCAU 17 2112
    BCL11A-1628 + GUCGGACUUGACCGUCA 17 2113
    BCL11A-1629 + CGUCGGACUUGACCGUC 17 2114
    BCL11A-1630 + CGGUGGAGAGACCGUCG 17 2115
    BCL11A-1631 + CCGGGGAGCUGGCGGUG 17 2116
    BCL11A-1632 + UUCCGGGGAGCUGGCGG 17 2117
    BCL11A-1633 + GUUCCGGGGAGCUGGCG 17 2118
    BCL11A-1634 + GCUGGUGCCGGGUUCCG 17 2119
    BCL11A-1635 + CGCUGGUGCCGGGUUCC 17 2120
    BCL11A-1636 + UCGCUGGUGCCGGGUUC 17 2121
    BCL11A-1637 + GUCGCUGGUGCCGGGUU 17 2122
    BCL11A-1638 + CCACCAAGUCGCUGGUG 17 2123
    BCL11A-1639 + ACUUGGCCACCACGGAC 17 2124
    BCL11A-1640 + UCUUGAACUUGGCCACC 17 2125
    BCL11A-1641 + UGGGGUCGUUCUCGCUC 17 2126
    BCL11A-1642 + GUUCUCCGGGAUCAGGU 17 2127
    BCL11A-1643 + CGUUCUCCGGGAUCAGG 17 2128
    BCL11A-1644 + UCCUCGUCCCCGUUCUC 17 2129
    BCL11A-1645 + CUCCUCGUCCCCGUUCU 17 2130
    BCL11A-1646 + CCGCCUCCAGGCUCAGC 17 2131
    BCL11A-1647 + GCCCACGACCGCGCCCC 17 2132
    BCL11A-1648 + CCCUGCAUGACGUCGGG 17 2133
    BCL11A-1649 + CCAUGCCCUGCAUGACG 17 2134
    BCL11A-1650 + UGAAGUGCUGCAUGGAG 17 2135
    BCL11A-1651 + CUCGCUGAAGUGCUGCA 17 2136
    BCL11A-1652 + CCUCGCUGAAGUGCUGC 17 2137
    BCL11A-1653 + CCUGGUGGAAGGCCUCG 17 2138
    BCL11A-1654 + UCUCGCCCAGGACCUGG 17 2139
    BCL11A-1655 + UUCUCGCCCAGGACCUG 17 2140
    BCL11A-1656 + CGCUUAUGCUUCUCGCC 17 2141
    BCL11A-1657 + GUCCGACUCGCCGGCCA 17 2142
    BCL11A-1658 + CGAGGCCGACUCGCCCG 17 2143
    BCL11A-1659 + CCGAGGCCGACUCGCCC 17 2144
    BCL11A-1660 + CCCGAGGCCGACUCGCC 17 2145
    BCL11A-1661 + CCCCGAGGCCGACUCGC 17 2146
    BCL11A-1662 + CUUUUUGGACAGGCCCC 17 2147
    BCL11A-1663 + UGCCCAGCAGCAGCUUU 17 2148
    BCL11A-1664 + GAAGGGGCUCAGCGAGC 17 2149
    BCL11A-1665 + AGAAGGGGCUCAGCGAG 17 2150
    BCL11A-1666 + CUUAGAGAAGGGGCUCA 17 2151
    BCL11A-1667 + CUUGAUGCGCUUAGAGA 17 2152
    BCL11A-1668 + GCUUGAUGCGCUUAGAG 17 2153
    BCL11A-1669 + CGAGCUUGAUGCGCUUA 17 2154
    BCL11A-1670 + CUCGAGCUUGAUGCGCU 17 2155
    BCL11A-1671 + GCAGGUCGAACUCCUUC 17 2156
    BCL11A-1672 + UCGCGGCCGGGGGCAGG 17 2157
    BCL11A-1673 + UGUUGGGCAUCGCGGCC 17 2158
    BCL11A-1674 + GUGUUGGGCAUCGCGGC 17 2159
    BCL11A-1675 + CGUGUUGGGCAUCGCGG 17 2160
    BCL11A-1676 + AGUACACGUUCUCCGUG 17 2161
    BCL11A-1677 + GUAGCCGGCGAGCCACU 17 2162
    BCL11A-1678 + UGGAGGCCGCGUAGCCG 17 2163
    BCL11A-1679 + GGGAUCUUUGAGCUGCC 17 2164
    BCL11A-1680 + AGGGAUCUUUGAGCUGC 17 2165
    BCL11A-1681 + AGCUAAGGAAGGGAUCU 17 2166
    BCL11A-1682 + GUCUCCGAAGCUAAGGA 17 2167
    BCL11A-1683 + AGUCUCCGAAGCUAAGG 17 2168
    BCL11A-1684 + UGGAGUCUCCGAAGCUA 17 2169
    BCL11A-1685 + CUGGAGUCUCCGAAGCU 17 2170
    BCL11A-1686 + GCGAUUGUCUGGAGUCU 17 2171
    BCL11A-1687 + GGCAAAAGGCGAUUGUC 17 2172
    BCL11A-1688 + AGGCAAAAGGCGAUUGU 17 2173
    BCL11A-1689 + CGAGGAGUGCUCCGACG 17 2174
    BCL11A-1690 + CCGAGGAGUGCUCCGAC 17 2175
    BCL11A-1691 + CUCCGAGGAGUGCUCCG 17 2176
    BCL11A-1692 + CAAACUCCCGUUCUCCG 17 2177
    BCL11A-1693 + GCAAACUCCCGUUCUCC 17 2178
    BCL11A-1694 + GCGCAAACUCCCGUUCU 17 2179
    BCL11A-1695 + GCUCCCCGGGCGGUGUG 17 2180
    BCL11A-1696 + CAGCUCCCCGGGCGGUG 17 2181
    BCL11A-1697 + CCAGCUCCCCGGGCGGU 17 2182
    BCL11A-1698 + UCCCUCCGUCCAGCUCC 17 2183
    BCL11A-1699 + UCCCGUGCCGCUGCGCC 17 2184
    BCL11A-1700 + GGCCCGGACCACUAAUA 17 2185
    BCL11A-1701 + GGGCCCGGACCACUAAU 17 2186
    BCL11A-1702 + GCUGGGCCUGCCCGGGC 17 2187
    BCL11A-1703 + UUUUGAGCUGGGCCUGC 17 2188
    BCL11A-1704 + GUCUGCCCUCUUUUGAG 17 2189
    BCL11A-1705 + GCUGCGUCUGCCCUCUU 17 2190
    BCL11A-1706 - CCCCCAUUCGGCGUAGUACC 20 2191
    BCL11A-1707 - CCCAUUCGGCGUAGUACCCA 20 2192
    BCL11A-1708 - CUCAAGAUGUGUGGCAGUUU 20 2193
    BCL11A-1709 - AGAUGUGUGGCAGUUUUCGG 20 2194
    BCL11A-1710 - GAUGUGUGGCAGUUUUCGGA 20 2195
    BCL11A-1711 - GGCAGUUUUCGGAUGGAAGC 20 2196
    BCL11A-1712 - CAGUUUUCGGAUGGAAGCUC 20 2197
    BCL11A-1713 - CCAUUCGGCGUAGUACC 17 2198
    BCL11A-1714 - AUUCGGCGUAGUACCCA 17 2199
    BCL11A-1715 - AAGAUGUGUGGCAGUUU 17 2200
    BCL11A-1716 - UGUGUGGCAGUUUUCGG 17 2201
    BCL11A-1717 - GUGUGGCAGUUUUCGGA 17 2202
    BCL11A-1718 - AGUUUUCGGAUGGAAGC 17 2203
    BCL11A-1719 - UUUUCGGAUGGAAGCUC 17 2204
    BCL11A-1720 + ACGCCGAAUGGGGGUGUGUG 20 2205
    BCL11A-1721 + ACUACGCCGAAUGGGGGUGU 20 2206
    BCL11A-1722 + CUCUGGGUACUACGCCGAAU 20 2207
    BCL11A-1723 + UCUCUGGGUACUACGCCGAA 20 2208
    BCL11A-1724 + CUCUCUGGGUACUACGCCGA 20 2209
    BCL11A-1725 + UGAGCUCUCUGGGUACUACG 20 2210
    BCL11A-1726 + UGCCACACAUCUUGAGCUCU 20 2211
    BCL11A-1727 + UCCGAAAACUGCCACACAUC 20 2212
    BCL11A-1728 + AAGGGCUCUCGAGCUUCCAU 20 2213
    BCL11A-1729 + CCGAAUGGGGGUGUGUG 17 2214
    BCL11A-1730 + ACGCCGAAUGGGGGUGU 17 2215
    BCL11A-1731 + UGGGUACUACGCCGAAU 17 2216
    BCL11A-1732 + CUGGGUACUACGCCGAA 17 2217
    BCL11A-1733 + UCUGGGUACUACGCCGA 17 2218
    BCL11A-1734 + GCUCUCUGGGUACUACG 17 2219
    BCL11A-1735 + CACACAUCUUGAGCUCU 17 2220
    BCL11A-1736 + GAAAACUGCCACACAUC 17 2221
    BCL11A-1737 + GGCUCUCGAGCUUCCAU 17 2222
  • Table 2F provides exemplary targeting domains for knocking out the BCL11A gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non-complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
  • TABLE 2F
    N. meningitidis gRNA targets
    for BCL11A knockout
    Tar-
    get
    gRNA DNA Targeting Site
    Name Strand Domain Length
    BCL11A-1738 AUCCAGGUCACGCCAGAGGA 20 2223
    BCL11A-1739 UGCAACACGCACAGAACACU 20 2224
    BCL11A-1740 UCCUUCCCAGCCACCUCUCC 20 2225
    BCL11A-1741 AUGGCUAUGGAGCCUCCCGC 20 2226
    BCL11A-1742 CAGGUCACGCCAGAGGA 17 2227
    BCL11A-1743 AACACGCACAGAACACU 17 2228
    BCL11A-1744 UUCCCAGCCACCUCUCC 17 2229
    BCL11A-1745 GCUAUGGAGCCUCCCGC 17 2230
    BCL11A-1746 + UGAAAAAAGCAUCCAAUCCC 20 2231
    BCL11A-1747 + GGAGGUUGGCAUCCAGGUCA 20 2232
    BCL11A-1748 + CGCCUGGGAUGAGUGCAGAA 20 2233
    BCL11A-1749 + UAGAAAGCGAACACGGAAGU 20 2234
    BCL11A-1750 + GGCUAUGGAGCCUCCCGCCA 20 2235
    BCL11A-1751 + CCUCCUCCCUCCCAGCCCCC 20 2236
    BCL11A-1752 + CCCAUGACGGUCAAGUCCGA 20 2237
    BCL11A-1753 + UUUGCCUCCUCGUCGGAGCA 20 2238
    BCL11A-1754 + UGAAAAAAGCAUCCAAU 17 2239
    BCL11A-1755 + GGAGGUUGGCAUCCAGG 17 2240
    BCL11A-1756 + CGCCUGGGAUGAGUGCA 17 2241
    BCL11A-1757 + UAGAAAGCGAACACGGA 17 2242
    BCL11A-1758 + GGCUAUGGAGCCUCCCG 17 2243
    BCL11A-1759 + CCUCCUCCCUCCCAGCC 17 2244
    BCL11A-1760 + CCCAUGACGGUCAAGUC 17 2245
    BCL11A-1761 + UUUGCCUCCUCGUCGGA 17 2246
  • Table 3A provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCL11A gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 3A
    S. pyogenes gRNA targets for
    BCL11A knockdown
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-1762 UCUUCUCCUUGCUGCCUCUG 20 2247
    BCL11A-1763 UCCUUGCUGCCUCUGAGGUU 20 2248
    BCL11A-1764 UGCUGCCUCUGAGGUUCGGU 20 2249
    BCL11A-1765 GCUGCCUCUGAGGUUCGGUC 20 2250
    BCL11A-1766 GCCUCUGAGGUUCGGUCGGG 20 2251
    BCL11A-1767 CCUCUGAGGUUCGGUCGGGA 20 2252
    BCL11A-1768 CUCUGAGGUUCGGUCGGGAG 20 2253
    BCL11A-1769 UGAGGUUCGGUCGGGAGGGG 20 2254
    BCL11A-1770 GAGGUUCGGUCGGGAGGGGA 20 2255
    BCL11A-1771 CGGUCGGGAGGGGAGGGCAG 20 2256
    BCL11A-1772 GGGGAGGGCAGCGGCAACCC 20 2257
    BCL11A-1773 GAGGGCAGCGGCAACCCAGG 20 2258
    BCL11A-1774 CAACCCAGGAGGCAGCAGUC 20 2259
    BCL11A-1775 AACCCAGGAGGCAGCAGUCC 20 2260
    BCL11A-1776 CUCCCUCUCCCGCGUGCCCC 20 2261
    BCL11A-1777 CCCCCGGCCGCCUCCUCCCC 20 2262
    BCL11A-1778 CGGCCCUAGCUCCUGCCCUU 20 2263
    BCL11A-1779 CCCUAGCUCCUGCCCUUCGG 20 2264
    BCL11A-1780 UAGCUCCUGCCCUUCGGCGG 20 2265
    BCL11A-1781 CUCCUGCCCUUCGGCGGCGG 20 2266
    BCL11A-1782 CUGCCCUUCGGCGGCGGCGG 20 2267
    BCL11A-1783 CCCUUCGGCGGCGGCGGCGG 20 2268
    BCL11A-1784 UUCGGCGGCGGCGGCGGCGG 20 2269
    BCL11A-1785 CGGCGGCGGCGGCGGCGGCG 20 2270
    BCL11A-1786 GGCGGCGGCGGCGGCGGCGC 20 2271
    BCL11A-1787 GGCGGCGGCGGCGGCGCGGG 20 2272
    BCL11A-1788 GCGGCGGCGGCGGCGCGGGA 20 2273
    BCL11A-1789 GGCGCGGGAGGGCAAGCGCG 20 2274
    BCL11A-1790 GGAGGGCAAGCGCGAGGAGC 20 2275
    BCL11A-1791 GCGCGAGGAGCCGGCACAAA 20 2276
    BCL11A-1792 GGAGCCGGCACAAAAGGCAG 20 2277
    BCL11A-1793 GAGCCGGCACAAAAGGCAGC 20 2278
    BCL11A-1794 GCGGGACAAACACCCACCUC 20 2279
    BCL11A-1795 GACAAACACCCACCUCUGGC 20 2280
    BCL11A-1796 CCACCUCUGGCCGGAACAAA 20 2281
    BCL11A-1797 CCUCUGGCCGGAACAAAAGG 20 2282
    BCL11A-1798 GGAACAAAAGGCGGCAGUGC 20 2283
    BCL11A-1799 GCCGCGUCUCCCGUCCUUCC 20 2284
    BCL11A-1800 UCCCGUCCUUCCCGGUCCCA 20 2285
    BCL11A-1801 CACGGCUCUCCCCGUCGCCG 20 2286
    BCL11A-1802 CGGCCCCUCUCCCGACUCCG 20 2287
    BCL11A-1803 UCUCCCGACUCCGCGGACUC 20 2288
    BCL11A-1804 CUCCGCGGACUCAGGAGCGC 20 2289
    BCL11A-1805 UCCGCGGACUCAGGAGCGCC 20 2290
    BCL11A-1806 CCGCGGACUCAGGAGCGCCG 20 2291
    BCL11A-1807 CGCGGACUCAGGAGCGCCGG 20 2292
    BCL11A-1808 GUGCCACUUUCUCACUAUUG 20 2293
    BCL11A-1809 UGCCACUUUCUCACUAUUGU 20 2294
    BCL11A-1810 GCCACUUUCUCACUAUUGUG 20 2295
    BCL11A-1811 ACACUUGACCGUGAGCGCGC 20 2296
    BCL11A-1812 AGUCUCACCUCUUUUCUCCC 20 2297
    BCL11A-1813 GUCUCACCUCUUUUCUCCCC 20 2298
    BCL11A-1814 CCUACCCCCCCAUUUUCUUA 20 2299
    BCL11A-1815 CCCCAUUUUCUUACGGUGAG 20 2300
    BCL11A-1816 CCCAUUUUCUUACGGUGAGU 20 2301
    BCL11A-1817 CCCCACCAGCUCCCACCCCC 20 2302
    BCL11A-1818 UGUUCAUUAUUUUGCAAAAC 20 2303
    BCL11A-1819 UCAUUAUUUUGCAAAACUGG 20 2304
    BCL11A-1820 CAUUAUUUUGCAAAACUGGC 20 2305
    BCL11A-1821 AUUAUUUUGCAAAACUGGCG 20 2306
    BCL11A-1822 AUUUUGCAAAACUGGCGGGG 20 2307
    BCL11A-1823 UUUUGCAAAACUGGCGGGGC 20 2308
    BCL11A-1824 UUUGCAAAACUGGCGGGGCG 20 2309
    BCL11A-1825 UUGCAAAACUGGCGGGGCGG 20 2310
    BCL11A-1826 UGCAAAACUGGCGGGGCGGG 20 2311
    BCL11A-1827 GCAAAACUGGCGGGGCGGGG 20 2312
    BCL11A-1828 CAAAACUGGCGGGGCGGGGG 20 2313
    BCL11A-1829 CUGGCGGGGCGGGGGGGGAG 20 2314
    BCL11A-1830 UUUCGAAAAGAGAAAUAAAG 20 2315
    BCL11A-1831 CGAAAAGAGAAAUAAAGCGG 20 2316
    BCL11A-1832 AGAGAAAUAAAGCGGCGGAA 20 2317
    BCL11A-1833 GAAAUAAAGCGGCGGAAAGG 20 2318
    BCL11A-1834 AGCGGCGGAAAGGAGGAAAG 20 2319
    BCL11A-1835 GGCGGAAAGGAGGAAAGAGG 20 2320
    BCL11A-1836 UAAAAUUAAAUAAAAUUAAA 20 2321
    BCL11A-1837 CUGUCUCAAAAGUGCAUACA 20 2322
    BCL11A-1838 CAAAAGUGCAUACACGGCAA 20 2323
    BCL11A-1839 UACACGGCAAUGGUUCCAGA 20 2324
    BCL11A-1840 ACACGGCAAUGGUUCCAGAU 20 2325
    BCL11A-1841 CAAUGGUUCCAGAUGGGAUG 20 2326
    BCL11A-1842 AAUGGUUCCAGAUGGGAUGA 20 2327
    BCL11A-1843 AUCUCUUUUACCUCGACUCU 20 2328
    BCL11A-1844 UCUUUUACCUCGACUCUCGG 20 2329
    BCL11A-1845 AUAAUUAUUAUUACUAUUAU 20 2330
    BCL11A-1846 UAAUUAUUAUUACUAUUAUU 20 2331
    BCL11A-1847 + UAAUAAUCACGAGAGCGCGC 20 2332
    BCL11A-1848 + CAGGACUAGAAGCAAAAGCG 20 2333
    BCL11A-1849 + AGGACUAGAAGCAAAAGCGA 20 2334
    BCL11A-1850 + GGACUAGAAGCAAAAGCGAG 20 2335
    BCL11A-1851 + GACUAGAAGCAAAAGCGAGG 20 2336
    BCL11A-1852 + AGCAAAAGCGAGGGGGAGAG 20 2337
    BCL11A-1853 + GCAAAAGCGAGGGGGAGAGA 20 2338
    BCL11A-1854 + CAAAAGCGAGGGGGAGAGAG 20 2339
    BCL11A-1855 + AGAAAAACCUCCGAGAGUCG 20 2340
    BCL11A-1856 + AGUCGAGGUAAAAGAGAUAA 20 2341
    BCL11A-1857 + GUCGAGGUAAAAGAGAUAAA 20 2342
    BCL11A-1858 + UCGAGGUAAAAGAGAUAAAG 20 2343
    BCL11A-1859 + CGAGGUAAAAGAGAUAAAGG 20 2344
    BCL11A-1860 + GAAAAAACCCUCAUCCCAUC 20 2345
    BCL11A-1861 + CUUUAUUUCUCUUUUCGAAA 20 2346
    BCL11A-1862 + CAAAAUAAUGAACAAUGCUA 20 2347
    BCL11A-1863 + GAACAACUCACAUGCAAACC 20 2348
    BCL11A-1864 + AACAACUCACAUGCAAACCU 20 2349
    BCL11A-1865 + ACAACUCACAUGCAAACCUG 20 2350
    BCL11A-1866 + CAACUCACAUGCAAACCUGG 20 2351
    BCL11A-1867 + CUCACAUGCAAACCUGGGGG 20 2352
    BCL11A-1868 + UCACAUGCAAACCUGGGGGU 20 2353
    BCL11A-1869 + GCAAACCUGGGGGUGGGAGC 20 2354
    BCL11A-1870 + AACCUGGGGGUGGGAGCUGG 20 2355
    BCL11A-1871 + ACCUGGGGGUGGGAGCUGGU 20 2356
    BCL11A-1872 + CCUGGGGGUGGGAGCUGGUG 20 2357
    BCL11A-1873 + GGGUGGGAGCUGGUGGGGAA 20 2358
    BCL11A-1874 + GGUGGGAGCUGGUGGGGAAA 20 2359
    BCL11A-1875 + GGGAGCUGGUGGGGAAAGGG 20 2360
    BCL11A-1876 + UCCCACUCACCGUAAGAAAA 20 2361
    BCL11A-1877 + CCCACUCACCGUAAGAAAAU 20 2362
    BCL11A-1878 + CCACUCACCGUAAGAAAAUG 20 2363
    BCL11A-1879 + CACUCACCGUAAGAAAAUGG 20 2364
    BCL11A-1880 + ACUCACCGUAAGAAAAUGGG 20 2365
    BCL11A-1881 + CUCACCGUAAGAAAAUGGGG 20 2366
    BCL11A-1882 + CCGUAAGAAAAUGGGGGGGU 20 2367
    BCL11A-1883 + CGUAAGAAAAUGGGGGGGUA 20 2368
    BCL11A-1884 + AAGAAAAUGGGGGGGUAGGG 20 2369
    BCL11A-1885 + AGAAAAUGGGGGGGUAGGGA 20 2370
    BCL11A-1886 + CAAGUCUAAAAAACGAUUCC 20 2371
    BCL11A-1887 + AAGUCUAAAAAACGAUUCCC 20 2372
    BCL11A-1888 + AGUCUAAAAAACGAUUCCCG 20 2373
    BCL11A-1889 + ACGAUUCCCGGGGAGAAAAG 20 2374
    BCL11A-1890 + GGGGAGAAAAGAGGUGAGAC 20 2375
    BCL11A-1891 + AAAGAGGUGAGACUGGCUUU 20 2376
    BCL11A-1892 + UUUGGACACCAGCGCGCUCA 20 2377
    BCL11A-1893 + GCUCACGGUCAAGUGUGCAG 20 2378
    BCL11A-1894 + CUCACGGUCAAGUGUGCAGC 20 2379
    BCL11A-1895 + ACGGUCAAGUGUGCAGCGGG 20 2380
    BCL11A-1896 + UCCCCACAAUAGUGAGAAAG 20 2381
    BCL11A-1897 + AUAGUGAGAAAGUGGCACUG 20 2382
    BCL11A-1898 + GAGAAAGUGGCACUGUGGAA 20 2383
    BCL11A-1899 + AGAAAGUGGCACUGUGGAAA 20 2384
    BCL11A-1900 + GAAAGUGGCACUGUGGAAAG 20 2385
    BCL11A-1901 + GCACUGUGGAAAGGGGCCCC 20 2386
    BCL11A-1902 + CCCCGGCGCUCCUGAGUCCG 20 2387
    BCL11A-1903 + CGCUCCUGAGUCCGCGGAGU 20 2388
    BCL11A-1904 + GCUCCUGAGUCCGCGGAGUC 20 2389
    BCL11A-1905 + UGAGUCCGCGGAGUCGGGAG 20 2390
    BCL11A-1906 + GAGUCCGCGGAGUCGGGAGA 20 2391
    BCL11A-1907 + AGUCCGCGGAGUCGGGAGAG 20 2392
    BCL11A-1908 + CGGAGUCGGGAGAGGGGCCG 20 2393
    BCL11A-1909 + CGGGAGAGGGGCCGCGGCGA 20 2394
    BCL11A-1910 + GGGAGAGGGGCCGCGGCGAC 20 2395
    BCL11A-1911 + GGAGAGGGGCCGCGGCGACG 20 2396
    BCL11A-1912 + CGCGGCGACGGGGAGAGCCG 20 2397
    BCL11A-1913 + GCGGCGACGGGGAGAGCCGU 20 2398
    BCL11A-1914 + GACGGGGAGAGCCGUGGGAC 20 2399
    BCL11A-1915 + ACGGGGAGAGCCGUGGGACC 20 2400
    BCL11A-1916 + GGAGAGCCGUGGGACCGGGA 20 2401
    BCL11A-1917 + AGCCGUGGGACCGGGAAGGA 20 2402
    BCL11A-1918 + GCCGUGGGACCGGGAAGGAC 20 2403
    BCL11A-1919 + ACCGGGAAGGACGGGAGACG 20 2404
    BCL11A-1920 + GGAAGGACGGGAGACGCGGC 20 2405
    BCL11A-1921 + GGCACUGCCGCCUUUUGUUC 20 2406
    BCL11A-1922 + CCGCCUUUUGUUCCGGCCAG 20 2407
    BCL11A-1923 + CCUUUUGUUCCGGCCAGAGG 20 2408
    BCL11A-1924 + CUUUUGUUCCGGCCAGAGGU 20 2409
    BCL11A-1925 + UGUCCCGCUGCCUUUUGUGC 20 2410
    BCL11A-1926 + GCCGCCGCCGCCGCCGCCGA 20 2411
    BCL11A-1927 + CCGCCGCCGCCGCCGCCGAA 20 2412
    BCL11A-1928 + CGCCGCCGCCGCCGAAGGGC 20 2413
    BCL11A-1929 + GCCGCCGAAGGGCAGGAGCU 20 2414
    BCL11A-1930 + CCGCCGAAGGGCAGGAGCUA 20 2415
    BCL11A-1931 + CGAAGGGCAGGAGCUAGGGC 20 2416
    BCL11A-1932 + GAAGGGCAGGAGCUAGGGCC 20 2417
    BCL11A-1933 + AAGGGCAGGAGCUAGGGCCG 20 2418
    BCL11A-1934 + AGGGCAGGAGCUAGGGCCGG 20 2419
    BCL11A-1935 + GCAGGAGCUAGGGCCGGGGG 20 2420
    BCL11A-1936 + GGAGCUAGGGCCGGGGGAGG 20 2421
    BCL11A-1937 + GCUAGGGCCGGGGGAGGAGG 20 2422
    BCL11A-1938 + GGGCCGGGGGAGGAGGCGGC 20 2423
    BCL11A-1939 + GGCCGGGGGAGGAGGCGGCC 20 2424
    BCL11A-1940 + GCCGGGGGAGGAGGCGGCCG 20 2425
    BCL11A-1941 + CCGGGGGAGGAGGCGGCCGG 20 2426
    BCL11A-1942 + AGGAGGCGGCCGGGGGCACG 20 2427
    BCL11A-1943 + GGAGGCGGCCGGGGGCACGC 20 2428
    BCL11A-1944 + CGGCCGGGGGCACGCGGGAG 20 2429
    BCL11A-1945 + GGCCGGGGGCACGCGGGAGA 20 2430
    BCL11A-1946 + CGGGGGCACGCGGGAGAGGG 20 2431
    BCL11A-1947 + GGGGGCACGCGGGAGAGGGA 20 2432
    BCL11A-1948 + GGCACGCGGGAGAGGGAGGG 20 2433
    BCL11A-1949 + GCACGCGGGAGAGGGAGGGA 20 2434
    BCL11A-1950 + GGAGAGGGAGGGAGGGAGCC 20 2435
    BCL11A-1951 + GAGCCCGGACUGCUGCCUCC 20 2436
    BCL11A-1952 + AGCCCGGACUGCUGCCUCCU 20 2437
    BCL11A-1953 + CCCUCCCGACCGAACCUCAG 20 2438
    BCL11A-1954 + ACCGAACCUCAGAGGCAGCA 20 2439
    BCL11A-1955 + AGAGGCAGCAAGGAGAAGAC 20 2440
    BCL11A-1956 + AAAAUAAAAUAAAUAAAACA 20 2441
    BCL11A-1957 UCUCCUUGCUGCCUCUG 17 2442
    BCL11A-1958 UUGCUGCCUCUGAGGUU 17 2443
    BCL11A-1959 UGCCUCUGAGGUUCGGU 17 2444
    BCL11A-1960 GCCUCUGAGGUUCGGUC 17 2445
    BCL11A-1961 UCUGAGGUUCGGUCGGG 17 2446
    BCL11A-1962 CUGAGGUUCGGUCGGGA 17 2447
    BCL11A-1963 UGAGGUUCGGUCGGGAG 17 2448
    BCL11A-1964 GGUUCGGUCGGGAGGGG 17 2449
    BCL11A-1965 GUUCGGUCGGGAGGGGA 17 2450
    BCL11A-1966 UCGGGAGGGGAGGGCAG 17 2451
    BCL11A-1967 GAGGGCAGCGGCAACCC 17 2452
    BCL11A-1968 GGCAGCGGCAACCCAGG 17 2453
    BCL11A-1969 CCCAGGAGGCAGCAGUC 17 2454
    BCL11A-1970 CCAGGAGGCAGCAGUCC 17 2455
    BCL11A-1971 CCUCUCCCGCGUGCCCC 17 2456
    BCL11A-1972 CCGGCCGCCUCCUCCCC 17 2457
    BCL11A-1973 CCCUAGCUCCUGCCCUU 17 2458
    BCL11A-1974 UAGCUCCUGCCCUUCGG 17 2459
    BCL11A-1975 CUCCUGCCCUUCGGCGG 17 2460
    BCL11A-1976 CUGCCCUUCGGCGGCGG 17 2461
    BCL11A-1977 CCCUUCGGCGGCGGCGG 17 2462
    BCL11A-1978 UUCGGCGGCGGCGGCGG 17 2463
    BCL11A-1979 GGCGGCGGCGGCGGCGG 17 2464
    BCL11A-1980 CGGCGGCGGCGGCGGCG 17 2465
    BCL11A-1981 GGCGGCGGCGGCGGCGG 17 2466
    BCL11A-1982 GGCGGCGGCGGCGCGGG 17 2467
    BCL11A-1983 GCGGCGGCGGCGCGGGA 17 2468
    BCL11A-1984 GCGGGAGGGCAAGCGCG 17 2469
    BCL11A-1985 GGGCAAGCGCGAGGAGC 17 2470
    BCL11A-1986 CGAGGAGCCGGCACAAA 17 2471
    BCL11A-1987 GCCGGCACAAAAGGCAG 17 2472
    BCL11A-1988 CCGGCACAAAAGGCAGC 17 2473
    BCL11A-1989 GGACAAACACCCACCUC 17 2474
    BCL11A-1990 AAACACCCACCUCUGGC 17 2475
    BCL11A-1991 CCUCUGGCCGGAACAAA 17 2476
    BCL11A-1992 CUGGCCGGAACAAAAGG 17 2477
    BCL11A-1993 ACAAAAGGCGGCAGUGC 17 2478
    BCL11A-1994 GCGUCUCCCGUCCUUCC 17 2479
    BCL11A-1995 CGUCCUUCCCGGUCCCA 17 2480
    BCL11A-1996 GGCUCUCCCCGUCGCCG 17 2481
    BCL11A-1997 CCCCUCUCCCGACUCCG 17 2482
    BCL11A-1998 CCCGACUCCGCGGACUC 17 2483
    BCL11A-1999 CGCGGACUCAGGAGCGC 17 2484
    BCL11A-2000 GCGGACUCAGGAGCGCC 17 2485
    BCL11A-2001 CGGACUCAGGAGCGCCG 17 2486
    BCL11A-2002 GGACUCAGGAGCGCCGG 17 2487
    BCL11A-2003 CCACUUUCUCACUAUUG 17 2488
    BCL11A-2004 CACUUUCUCACUAUUGU 17 2489
    BCL11A-2005 ACUUUCUCACUAUUGUG 17 2490
    BCL11A-2006 CUUGACCGUGAGCGCGC 17 2491
    BCL11A-2007 CUCACCUCUUUUCUCCC 17 2492
    BCL11A-2008 UCACCUCUUUUCUCCCC 17 2493
    BCL11A-2009 ACCCCCCCAUUUUCUUA 17 2494
    BCL11A-2010 CAUUUUCUUACGGUGAG 17 2495
    BCL11A-2011 AUUUUCUUACGGUGAGU 17 2496
    BCL11A-2012 CACCAGCUCCCACCCCC 17 2497
    BCL11A-2013 UCAUUAUUUUGCAAAAC 17 2498
    BCL11A-2014 UUAUUUUGCAAAACUGG 17 2499
    BCL11A-2015 UAUUUUGCAAAACUGGC 17 2500
    BCL11A-2016 AUUUUGCAAAACUGGCG 17 2501
    BCL11A-2017 UUGCAAAACUGGCGGGG 17 2502
    BCL11A-2018 UGCAAAACUGGCGGGGC 17 2503
    BCL11A-2019 GCAAAACUGGCGGGGCG 17 2504
    BCL11A-2020 CAAAACUGGCGGGGCGG 17 2505
    BCL11A-2021 AAAACUGGCGGGGCGGG 17 2506
    BCL11A-2022 AAACUGGCGGGGCGGGG 17 2507
    BCL11A-2023 AACUGGCGGGGCGGGGG 17 2508
    BCL11A-2024 GCGGGGCGGGGGGGGAG 17 2509
    BCL11A-2025 CGAAAAGAGAAAUAAAG 17 2510
    BCL11A-2026 AAAGAGAAAUAAAGCGG 17 2511
    BCL11A-2027 GAAAUAAAGCGGCGGAA 17 2512
    BCL11A-2028 AUAAAGCGGCGGAAAGG 17 2513
    BCL11A-2029 GGCGGAAAGGAGGAAAG 17 2514
    BCL11A-2030 GGAAAGGAGGAAAGAGG 17 2515
    BCL11A-2031 AAUUAAAUAAAAUUAAA 17 2516
    BCL11A-2032 UCUCAAAAGUGCAUACA 17 2517
    BCL11A-2033 AAGUGCAUACACGGCAA 17 2518
    BCL11A-2034 ACGGCAAUGGUUCCAGA 17 2519
    BCL11A-2035 CGGCAAUGGUUCCAGAU 17 2520
    BCL11A-2036 UGGUUCCAGAUGGGAUG 17 2521
    BCL11A-2037 GGUUCCAGAUGGGAUGA 17 2522
    BCL11A-2038 UCUUUUACCUCGACUCU 17 2523
    BCL11A-2039 UUUACCUCGACUCUCGG 17 2524
    BCL11A-2040 AUUAUUAUUACUAUUAU 17 2525
    BCL11A-2041 UUAUUAUUACUAUUAUU 17 2526
    BCL11A-2042 + UAAUCACGAGAGCGCGC 17 2527
    BCL11A-2043 + GACUAGAAGCAAAAGCG 17 2528
    BCL11A-2044 + ACUAGAAGCAAAAGCGA 17 2529
    BCL11A-2045 + CUAGAAGCAAAAGCGAG 17 2530
    BCL11A-2046 + UAGAAGCAAAAGCGAGG 17 2531
    BCL11A-2047 + AAAAGCGAGGGGGAGAG 17 2532
    BCL11A-2048 + AAAGCGAGGGGGAGAGA 17 2533
    BCL11A-2049 + AAGCGAGGGGGAGAGAG 17 2534
    BCL11A-2050 + AAAACCUCCGAGAGUCG 17 2535
    BCL11A-2051 + CGAGGUAAAAGAGAUAA 17 2536
    BCL11A-2052 + GAGGUAAAAGAGAUAAA 17 2537
    BCL11A-2053 + AGGUAAAAGAGAUAAAG 17 2538
    BCL11A-2054 + GGUAAAAGAGAUAAAGG 17 2539
    BCL11A-2055 + AAAACCCUCAUCCCAUC 17 2540
    BCL11A-2056 + UAUUUCUCUUUUCGAAA 17 2541
    BCL11A-2057 + AAUAAUGAACAAUGCUA 17 2542
    BCL11A-2058 + CAACUCACAUGCAAACC 17 2543
    BCL11A-2059 + AACUCACAUGCAAACCU 17 2544
    BCL11A-2060 + ACUCACAUGCAAACCUG 17 2545
    BCL11A-2061 + CUCACAUGCAAACCUGG 17 2546
    BCL11A-2062 + ACAUGCAAACCUGGGGG 17 2547
    BCL11A-2063 + CAUGCAAACCUGGGGGU 17 2548
    BCL11A-2064 + AACCUGGGGGUGGGAGC 17 2549
    BCL11A-2065 + CUGGGGGUGGGAGCUGG 17 2550
    BCL11A-2066 + UGGGGGUGGGAGCUGGU 17 2551
    BCL11A-2067 + GGGGGUGGGAGCUGGUG 17 2552
    BCL11A-2068 + UGGGAGCUGGUGGGGAA 17 2553
    BCL11A-2069 + GGGAGCUGGUGGGGAAA 17 2554
    BCL11A-2070 + AGCUGGUGGGGAAAGGG 17 2555
    BCL11A-2071 + CACUCACCGUAAGAAAA 17 2556
    BCL11A-2072 + ACUCACCGUAAGAAAAU 17 2557
    BCL11A-2073 + CUCACCGUAAGAAAAUG 17 2558
    BCL11A-2074 + UCACCGUAAGAAAAUGG 17 2559
    BCL11A-2075 + CACCGUAAGAAAAUGGG 17 2560
    BCL11A-2076 + ACCGUAAGAAAAUGGGG 17 2561
    BCL11A-2077 + UAAGAAAAUGGGGGGGU 17 2562
    BCL11A-2078 + AAGAAAAUGGGGGGGUA 17 2563
    BCL11A-2079 + AAAAUGGGGGGGUAGGG 17 2564
    BCL11A-2080 + AAAUGGGGGGGUAGGGA 17 2565
    BCL11A-2081 + GUCUAAAAAACGAUUCC 17 2566
    BCL11A-2082 + UCUAAAAAACGAUUCCC 17 2567
    BCL11A-2083 + CUAAAAAACGAUUCCCG 17 2568
    BCL11A-2084 + AUUCCCGGGGAGAAAAG 17 2569
    BCL11A-2085 + GAGAAAAGAGGUGAGAC 17 2570
    BCL11A-2086 + GAGGUGAGACUGGCUUU 17 2571
    BCL11A-2087 + GGACACCAGCGCGCUCA 17 2572
    BCL11A-2088 + CACGGUCAAGUGUGCAG 17 2573
    BCL11A-2089 + ACGGUCAAGUGUGCAGC 17 2574
    BCL11A-2090 + GUCAAGUGUGCAGCGGG 17 2575
    BCL11A-2091 + CCACAAUAGUGAGAAAG 17 2576
    BCL11A-2092 + GUGAGAAAGUGGCACUG 17 2577
    BCL11A-2093 + AAAGUGGCACUGUGGAA 17 2578
    BCL11A-2094 + AAGUGGCACUGUGGAAA 17 2579
    BCL11A-2095 + AGUGGCACUGUGGAAAG 17 2580
    BCL11A-2096 + CUGUGGAAAGGGGCCCC 17 2581
    BCL11A-2097 + CGGCGCUCCUGAGUCCG 17 2582
    BCL11A-2098 + UCCUGAGUCCGCGGAGU 17 2583
    BCL11A-2099 + CCUGAGUCCGCGGAGUC 17 2584
    BCL11A-2100 + GUCCGCGGAGUCGGGAG 17 2585
    BCL11A-2101 + UCCGCGGAGUCGGGAGA 17 2586
    BCL11A-2102 + CCGCGGAGUCGGGAGAG 17 2587
    BCL11A-2103 + AGUCGGGAGAGGGGCCG 17 2588
    BCL11A-2104 + GAGAGGGGCCGCGGCGA 17 2589
    BCL11A-2105 + AGAGGGGCCGCGGCGAC 17 2590
    BCL11A-2106 + GAGGGGCCGCGGCGACG 17 2591
    BCL11A-2107 + GGCGACGGGGAGAGCCG 17 2592
    BCL11A-2108 + GCGACGGGGAGAGCCGU 17 2593
    BCL11A-2109 + GGGGAGAGCCGUGGGAC 17 2594
    BCL11A-2110 + GGGAGAGCCGUGGGACC 17 2595
    BCL11A-2111 + GAGCCGUGGGACCGGGA 17 2596
    BCL11A-2112 + CGUGGGACCGGGAAGGA 17 2597
    BCL11A-2113 + GUGGGACCGGGAAGGAC 17 2598
    BCL11A-2114 + GGGAAGGACGGGAGACG 17 2599
    BCL11A-2115 + AGGACGGGAGACGCGGC 17 2600
    BCL11A-2116 + ACUGCCGCCUUUUGUUC 17 2601
    BCL11A-2117 + CCUUUUGUUCCGGCCAG 17 2602
    BCL11A-2118 + UUUGUUCCGGCCAGAGG 17 2603
    BCL11A-2119 + UUGUUCCGGCCAGAGGU 17 2604
    BCL11A-2120 + CCCGCUGCCUUUUGUGC 17 2605
    BCL11A-2121 + GCCGCCGCCGCCGCCGA 17 2606
    BCL11A-2122 + CCGCCGCCGCCGCCGAA 17 2607
    BCL11A-2123 + CGCCGCCGCCGAAGGGC 17 2608
    BCL11A-2124 + GCCGAAGGGCAGGAGCU 17 2609
    BCL11A-2125 + CCGAAGGGCAGGAGCUA 17 2610
    BCL11A-2126 + AGGGCAGGAGCUAGGGC 17 2611
    BCL11A-2127 + GGGCAGGAGCUAGGGCC 17 2612
    BCL11A-2128 + GGCAGGAGCUAGGGCCG 17 2613
    BCL11A-2129 + GCAGGAGCUAGGGCCGG 17 2614
    BCL11A-2130 + GGAGCUAGGGCCGGGGG 17 2615
    BCL11A-2131 + GCUAGGGCCGGGGGAGG 17 2616
    BCL11A-2132 + AGGGCCGGGGGAGGAGG 17 2617
    BCL11A-2133 + CCGGGGGAGGAGGCGGC 17 2618
    BCL11A-2134 + CGGGGGAGGAGGCGGCC 17 2619
    BCL11A-2135 + GGGGGAGGAGGCGGCCG 17 2620
    BCL11A-2136 + GGGGAGGAGGCGGCCGG 17 2621
    BCL11A-2137 + AGGCGGCCGGGGGCACG 17 2622
    BCL11A-2138 + GGCGGCCGGGGGCACGC 17 2623
    BCL11A-2139 + CCGGGGGCACGCGGGAG 17 2624
    BCL11A-2140 + CGGGGGCACGCGGGAGA 17 2625
    BCL11A-2141 + GGGCACGCGGGAGAGGG 17 2626
    BCL11A-2142 + GGCACGCGGGAGAGGGA 17 2627
    BCL11A-2143 + ACGCGGGAGAGGGAGGG 17 2628
    BCL11A-2144 + CGCGGGAGAGGGAGGGA 17 2629
    BCL11A-2145 + GAGGGAGGGAGGGAGCC 17 2630
    BCL11A-2146 + CCCGGACUGCUGCCUCC 17 2631
    BCL11A-2147 + CCGGACUGCUGCCUCCU 17 2632
    BCL11A-2148 + UCCCGACCGAACCUCAG 17 2633
    BCL11A-2149 + GAACCUCAGAGGCAGCA 17 2634
    BCL11A-2150 + GGCAGCAAGGAGAAGAC 17 2635
    BCL11A-2151 + AUAAAAUAAAUAAAACA 17 2636
  • Table 3B provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCL11A gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the BCL6A gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 3B
    S. aureus gRNA targets for BCL11A knockdown
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-2152 CAGUCUUCUCCUUGCUGCCU 20 2637
    BCL11A-2153 UUGCUGCCUCUGAGGUUCGG 20 2638
    BCL11A-2154 UGCUGCCUCUGAGGUUCGGU 20 2639
    BCL11A-2155 GCUGCCUCUGAGGUUCGGUC 20 2640
    BCL11A-2156 UGCCUCUGAGGUUCGGUCGG 20 2641
    BCL11A-2157 GCCUCUGAGGUUCGGUCGGG 20 2642
    BCL11A-2158 CCUCUGAGGUUCGGUCGGGA 20 2643
    BCL11A-2159 CUCUGAGGUUCGGUCGGGAG 20 2644
    BCL11A-216O CUGAGGUUCGGUCGGGAGGG 20 2645
    BCL11A-2161 AGGGGAGGGCAGCGGCAACC 20 2646
    BCL11A-2162 GGGGAGGGCAGCGGCAACCC 20 2647
    BCL11A-2163 GCAACCCAGGAGGCAGCAGU 20 2648
    BCL11A-2164 GCGGCGGCGGCGGCGGCGGC 20 2649
    BCL11A-2165 CGGCGGCGGCGGCGGCGGCG 20 2650
    BCL11A-2166 GGCGGCGGCGGCGGCGGCGC 20 2651
    BCL11A-2167 CGGCGGCGGCGGCGGCGCGG 20 2652
    BCL11A-2168 GGCGGCGCGGGAGGGCAAGC 20 2653
    BCL11A-2169 CGGCGCGGGAGGGCAAGCGC 20 2654
    BCL11A-2170 GGCGCGGGAGGGCAAGCGCG 20 2655
    BCL11A-2171 AGGAGCCGGCACAAAAGGCA 20 2656
    BCL11A-2172 GGAGCCGGCACAAAAGGCAG 20 2657
    BCL11A-2173 GGACAAACACCCACCUCUGG 20 2658
    BCL11A-2174 GACAAACACCCACCUCUGGC 20 2659
    BCL11A-2175 GCGGCCCCUCUCCCGACUCC 20 2660
    BCL11A-2176 CUCUCCCGACUCCGCGGACU 20 2661
    BCL11A-2177 UCUCCCGACUCCGCGGACUC 20 2662
    BCL11A-2178 ACUCCGCGGACUCAGGAGCG 20 2663
    BCL11A-2179 CUCCGCGGACUCAGGAGCGC 20 2664
    BCL11A-2180 UCCGCGGACUCAGGAGCGCC 20 2665
    BCL11A-2181 AGUGCCACUUUCUCACUAUU 20 2666
    BCL11A-2182 GUGCCACUUUCUCACUAUUG 20 2667
    BCL11A-2183 UGCCACUUUCUCACUAUUGU 20 2668
    BCL11A-2184 CUCCCGCUGCACACUUGACC 20 2669
    BCL11A-2185 CAGUCUCACCUCUUUUCUCC 20 2670
    BCL11A-2186 AGUCUCACCUCUUUUCUCCC 20 2671
    BCL11A-2187 GUCUCACCUCUUUUCUCCCC 20 2672
    BCL11A-2188 UACCCCCCCAUUUUCUUACG 20 2673
    BCL11A-2189 CCCCCAUUUUCUUACGGUGA 20 2674
    BCL11A-2190 CCCCAUUUUCUUACGGUGAG 20 2675
    BCL11A-2191 CCCAUUUUCUUACGGUGAGU 20 2676
    BCL11A-2192 UCCCACCCCCAGGUUUGCAU 20 2677
    BCL11A-2193 UUCAUUAUUUUGCAAAACUG 20 2678
    BCL11A-2194 UCAUUAUUUUGCAAAACUGG 20 2679
    BCL11A-2195 UAUUUUGCAAAACUGGCGGG 20 2680
    BCL11A-2196 AUUUUGCAAAACUGGCGGGG 20 2681
    BCL11A-2197 UUUUGCAAAACUGGCGGGGC 20 2682
    BCL11A-2198 UUUGCAAAACUGGCGGGGCG 20 2683
    BCL11A-2199 UUGCAAAACUGGCGGGGCGG 20 2684
    BCL11A-2200 UGCAAAACUGGCGGGGCGGG 20 2685
    BCL11A-2201 GCAAAACUGGCGGGGCGGGG 20 2686
    BCL11A-2202 CAAAACUGGCGGGGCGGGGG 20 2687
    BCL11A-2203 ACUGGCGGGGCGGGGGGGGA 20 2688
    BCL11A-2204 CUGGCGGGGCGGGGGGGGAG 20 2689
    BCL11A-2205 UGGAAUCAUUGCAUUCCUUU 20 2690
    BCL11A-2206 UCAUUGCAUUCCUUUUCGAA 20 2691
    BCL11A-2207 AUUGCAUUCCUUUUCGAAAA 20 2692
    BCL11A-2208 UCGAAAAGAGAAAUAAAGCG 20 2693
    BCL11A-2209 CGAAAAGAGAAAUAAAGCGG 20 2694
    BCL11A-2210 AAGAGAAAUAAAGCGGCGGA 20 2695
    BCL11A-2211 AGAGAAAUAAAGCGGCGGAA 20 2696
    BCL11A-2212 AGAAAUAAAGCGGCGGAAAG 20 2697
    BCL11A-2213 GAAAUAAAGCGGCGGAAAGG 20 2698
    BCL11A-2214 UAAAGCGGCGGAAAGGAGGA 20 2699
    BCL11A-2215 AAGCGGCGGAAAGGAGGAAA 20 2700
    BCL11A-2216 AGCGGCGGAAAGGAGGAAAG 20 2701
    BCL11A-2217 CGGCGGAAAGGAGGAAAGAG 20 2702
    BCL11A-2218 GGCGGAAAGGAGGAAAGAGG 20 2703
    BCL11A-2219 AUACACGGCAAUGGUUCCAG 20 2704
    BCL11A-2220 UACACGGCAAUGGUUCCAGA 20 2705
    BCL11A-2221 CGGCAAUGGUUCCAGAUGGG 20 2706
    BCL11A-2222 GCAAUGGUUCCAGAUGGGAU 20 2707
    BCL11A-2223 UAUCUCUUUUACCUCGACUC 20 2708
    BCL11A-2224 AUCUCUUUUACCUCGACUCU 20 2709
    BCL11A-2225 GACUCUCGGAGGUUUUUCUC 20 2710
    BCL11A-2226 AAUAAUUAUUAUUACUAUUA 20 2711
    BCL11A-2227 ACUAUUAUUGGGUUACUUAC 20 2712
    BCL11A-2228 UAUUAUUGGGUUACUUACGC 20 2713
    BCL11A-2229 UCUUCUCCUUGCUGCCU 17 2714
    BCL11A-2230 CUGCCUCUGAGGUUCGG 17 2715
    BCL11A-2231 UGCCUCUGAGGUUCGGU 17 2716
    BCL11A-2232 GCCUCUGAGGUUCGGUC 17 2717
    BCL11A-2233 CUCUGAGGUUCGGUCGG 17 2718
    BCL11A-2234 UCUGAGGUUCGGUCGGG 17 2719
    BCL11A-2235 CUGAGGUUCGGUCGGGA 17 2720
    BCL11A-2236 UGAGGUUCGGUCGGGAG 17 2721
    BCL11A-2237 AGGUUCGGUCGGGAGGG 17 2722
    BCL11A-2238 GGAGGGCAGCGGCAACC 17 2723
    BCL11A-2239 GAGGGCAGCGGCAACCC 17 2724
    BCL11A-2240 ACCCAGGAGGCAGCAGU 17 2725
    BCL11A-2241 GCGGCGGCGGCGGCGGC 17 2726
    BCL11A-2242 CGGCGGCGGCGGCGGCG 17 2727
    BCL11A-2243 GGCGGCGGCGGCGGCGC 17 2728
    BCL11A-2244 CGGCGGCGGCGGCGCGG 17 2729
    BCL11A-2245 GGCGCGGGAGGGCAAGC 17 2730
    BCL11A-2246 CGCGGGAGGGCAAGCGC 17 2731
    BCL11A-2247 GCGGGAGGGCAAGCGCG 17 2732
    BCL11A-2248 AGCCGGCACAAAAGGCA 17 2733
    BCL11A-2249 GCCGGCACAAAAGGCAG 17 2734
    BCL11A-2250 CAAACACCCACCUCUGG 17 2735
    BCL11A-2251 AAACACCCACCUCUGGC 17 2736
    BCL11A-2252 GCCCCUCUCCCGACUCC 17 2737
    BCL11A-2253 UCCCGACUCCGCGGACU 17 2738
    BCL11A-2254 CCCGACUCCGCGGACUC 17 2739
    BCL11A-2255 CCGCGGACUCAGGAGCG 17 2740
    BCL11A-2256 CGCGGACUCAGGAGCGC 17 2741
    BCL11A-2257 GCGGACUCAGGAGCGCC 17 2742
    BCL11A-2258 GCCACUUUCUCACUAUU 17 2743
    BCL11A-2259 CCACUUUCUCACUAUUG 17 2744
    BCL11A-2260 CACUUUCUCACUAUUGU 17 2745
    BCL11A-2261 CCGCUGCACACUUGACC 17 2746
    BCL11A-2262 UCUCACCUCUUUUCUCC 17 2747
    BCL11A-2263 CUCACCUCUUUUCUCCC 17 2748
    BCL11A-2264 UCACCUCUUUUCUCCCC 17 2749
    BCL11A-2265 CCCCCCAUUUUCUUACG 17 2750
    BCL11A-2266 CCAUUUUCUUACGGUGA 17 2751
    BCL11A-2267 CAUUUUCUUACGGUGAG 17 2752
    BCL11A-2268 AUUUUCUUACGGUGAGU 17 2753
    BCL11A-2269 CACCCCCAGGUUUGCAU 17 2754
    BCL11A-2270 AUUAUUUUGCAAAACUG 17 2755
    BCL11A-2271 UUAUUUUGCAAAACUGG 17 2756
    BCL11A-2272 UUUGCAAAACUGGCGGG 17 2757
    BCL11A-2273 UUGCAAAACUGGCGGGG 17 2758
    BCL11A-2274 UGCAAAACUGGCGGGGC 17 2759
    BCL11A-2275 GCAAAACUGGCGGGGCG 17 2760
    BCL11A-2276 CAAAACUGGCGGGGCGG 17 2761
    BCL11A-2277 AAAACUGGCGGGGCGGG 17 2762
    BCL11A-2278 AAACUGGCGGGGCGGGG 17 2763
    BCL11A-2279 AACUGGCGGGGCGGGGG 17 2764
    BCL11A-2280 GGCGGGGCGGGGGGGGA 17 2765
    BCL11A-2281 GCGGGGCGGGGGGGGAG 17 2766
    BCL11A-2282 AAUCAUUGCAUUCCUUU 17 2767
    BCL11A-2283 UUGCAUUCCUUUUCGAA 17 2768
    BCL11A-2284 GCAUUCCUUUUCGAAAA 17 2769
    BCL11A-2285 AAAAGAGAAAUAAAGCG 17 2770
    BCL11A-2286 AAAGAGAAAUAAAGCGG 17 2771
    BCL11A-2287 AGAAAUAAAGCGGCGGA 17 2772
    BCL11A-2288 GAAAUAAAGCGGCGGAA 17 2773
    BCL11A-2289 AAUAAAGCGGCGGAAAG 17 2774
    BCL11A-2290 AUAAAGCGGCGGAAAGG 17 2775
    BCL11A-2291 AGCGGCGGAAAGGAGGA 17 2776
    BCL11A-2292 CGGCGGAAAGGAGGAAA 17 2777
    BCL11A-2293 GGCGGAAAGGAGGAAAG 17 2778
    BCL11A-2294 CGGAAAGGAGGAAAGAG 17 2779
    BCL11A-2295 GGAAAGGAGGAAAGAGG 17 2780
    BCL11A-2296 CACGGCAAUGGUUCCAG 17 2781
    BCL11A-2297 ACGGCAAUGGUUCCAGA 17 2782
    BCL11A-2298 CAAUGGUUCCAGAUGGG 17 2783
    BCL11A-2299 AUGGUUCCAGAUGGGAU 17 2784
    BCL11A-2300 CUCUUUUACCUCGACUC 17 2785
    BCL11A-2301 UCUUUUACCUCGACUCU 17 2786
    BCL11A-2302 UCUCGGAGGUUUUUCUC 17 2787
    BCL11A-2303 AAUUAUUAUUACUAUUA 17 2788
    BCL11A-2304 AUUAUUGGGUUACUUAC 17 2789
    BCL11A-2305 UAUUGGGUUACUUACGC 17 2790
    BCL11A-2306 + CGAACCUCAGAGGCAGCAAG 20 2791
    BCL11A-2307 + ACCGAACCUCAGAGGCAGCA 20 2792
    BCL11A-2308 + GACCGAACCUCAGAGGCAGC 20 2793
    BCL11A-2309 + CUCCCCUCCCGACCGAACCU 20 2794
    BCL11A-2310 + CCGCUGCCCUCCCCUCCCGA 20 2795
    BCL11A-2311 + GGAGCCCGGACUGCUGCCUC 20 2796
    BCL11A-2312 + GGGAGAGGGAGGGAGGGAGC 20 2797
    BCL11A-2313 + GCACGCGGGAGAGGGAGGGA 20 2798
    BCL11A-2314 + GGCACGCGGGAGAGGGAGGG 20 2799
    BCL11A-2315 + GGGCACGCGGGAGAGGGAGG 20 2800
    BCL11A-2316 + GGGGGCACGCGGGAGAGGGA 20 2801
    BCL11A-2317 + CGGGGGCACGCGGGAGAGGG 20 2802
    BCL11A-2318 + CCGGGGGCACGCGGGAGAGG 20 2803
    BCL11A-2319 + GGCCGGGGGCACGCGGGAGA 20 2804
    BCL11A-2320 + CGGCCGGGGGCACGCGGGAG 20 2805
    BCL11A-2321 + GCGGCCGGGGGCACGCGGGA 20 2806
    BCL11A-2322 + AGGCGGCCGGGGGCACGCGG 20 2807
    BCL11A-2323 + GGAGGCGGCCGGGGGCACGC 20 2808
    BCL11A-2324 + AGGAGGCGGCCGGGGGCACG 20 2809
    BCL11A-2325 + GAGGAGGCGGCCGGGGGCAC 20 2810
    BCL11A-2326 + GGCCGGGGGAGGAGGCGGCC 20 2811
    BCL11A-2327 + GGGCCGGGGGAGGAGGCGGC 20 2812
    BCL11A-2328 + AGGGCCGGGGGAGGAGGCGG 20 2813
    BCL11A-2329 + GCAGGAGCUAGGGCCGGGGG 20 2814
    BCL11A-2330 + GGCAGGAGCUAGGGCCGGGG 20 2815
    BCL11A-2331 + AGGGCAGGAGCUAGGGCCGG 20 2816
    BCL11A-2332 + AAGGGCAGGAGCUAGGGCCG 20 2817
    BCL11A-2333 + GAAGGGCAGGAGCUAGGGCC 20 2818
    BCL11A-2334 + CGAAGGGCAGGAGCUAGGGC 20 2819
    BCL11A-2335 + CCGAAGGGCAGGAGCUAGGG 20 2820
    BCL11A-2336 + CGCCGCCGAAGGGCAGGAGC 20 2821
    BCL11A-2337 + CGCCGCCGCCGCCGAAGGGC 20 2822
    BCL11A-2338 + CCGCCGCCGCCGCCGAAGGG 20 2823
    BCL11A-2339 + CGCCGCCGCCGCCGCCGCCG 20 2824
    BCL11A-2340 + CGCCGCCGCCGCCGCCGCCG 20 2825
    BCL11A-2341 + GCCUUUUGUUCCGGCCAGAG 20 2826
    BCL11A-2342 + CUGCCGCCUUUUGUUCCGGC 20 2827
    BCL11A-2343 + GCCGUGGGACCGGGAAGGAC 20 2828
    BCL11A-2344 + AGCCGUGGGACCGGGAAGGA 20 2829
    BCL11A-2345 + GAGCCGUGGGACCGGGAAGG 20 2830
    BCL11A-2346 + GGGAGAGCCGUGGGACCGGG 20 2831
    BCL11A-2347 + ACGGGGAGAGCCGUGGGACC 20 2832
    BCL11A-2348 + GACGGGGAGAGCCGUGGGAC 20 2833
    BCL11A-2349 + CGACGGGGAGAGCCGUGGGA 20 2834
    BCL11A-2350 + CGCGGCGACGGGGAGAGCCG 20 2835
    BCL11A-2351 + CCGCGGCGACGGGGAGAGCC 20 2836
    BCL11A-2352 + AGAGGGGCCGCGGCGACGGG 20 2837
    BCL11A-2353 + GGAGAGGGGCCGCGGCGACG 20 2838
    BCL11A-2354 + GGGAGAGGGGCCGCGGCGAC 20 2839
    BCL11A-2355 + CGGGAGAGGGGCCGCGGCGA 20 2840
    BCL11A-2356 + UCGGGAGAGGGGCCGCGGCG 20 2841
    BCL11A-2357 + UGAGUCCGCGGAGUCGGGAG 20 2842
    BCL11A-2358 + CUGAGUCCGCGGAGUCGGGA 20 2843
    BCL11A-2359 + UCCUGAGUCCGCGGAGUCGG 20 2844
    BCL11A-2360 + GCUCCUGAGUCCGCGGAGUC 20 2845
    BCL11A-2361 + CGCUCCUGAGUCCGCGGAGU 20 2846
    BCL11A-2362 + GCGCUCCUGAGUCCGCGGAG 20 2847
    BCL11A-2363 + CCCCGGCGCUCCUGAGUCCG 20 2848
    BCL11A-2364 + CCCCCGGCGCUCCUGAGUCC 20 2849
    BCL11A-2365 + GAAAGGGGCCCCCGGCGCUC 20 2850
    BCL11A-2366 + GAGAAAGUGGCACUGUGGAA 20 2851
    BCL11A-2367 + UGAGAAAGUGGCACUGUGGA 20 2852
    BCL11A-2368 + AUAGUGAGAAAGUGGCACUG 20 2853
    BCL11A-2369 + AAUAGUGAGAAAGUGGCACU 20 2854
    BCL11A-2370 + GUAGUCAUCCCCACAAUAGU 20 2855
    BCL11A-2371 + AAGUAGUCAUCCCCACAAUA 20 2856
    BCL11A-2372 + ACGGUCAAGUGUGCAGCGGG 20 2857
    BCL11A-2373 + CACGGUCAAGUGUGCAGCGG 20 2858
    BCL11A-2374 + CUCACGGUCAAGUGUGCAGC 20 2859
    BCL11A-2375 + GCUCACGGUCAAGUGUGCAG 20 2860
    BCL11A-2376 + CGCUCACGGUCAAGUGUGCA 20 2861
    BCL11A-2377 + AAAAGAGGUGAGACUGGCUU 20 2862
    BCL11A-2378 + GAUUCCCGGGGAGAAAAGAG 20 2863
    BCL11A-2379 + AAAACGAUUCCCGGGGAGAA 20 2864
    BCL11A-2380 + UCUAAAAAACGAUUCCCGGG 20 2865
    BCL11A-2381 + AGUCUAAAAAACGAUUCCCG 20 2866
    BCL11A-2382 + AAGUCUAAAAAACGAUUCCC 20 2867
    BCL11A-2383 + CAAGUCUAAAAAACGAUUCC 20 2868
    BCL11A-2384 + ACAAGUCUAAAAAACGAUUC 20 2869
    BCL11A-2385 + AAUGGGGGGGUAGGGAGGGA 20 2870
    BCL11A-2386 + AGAAAAUGGGGGGGUAGGGA 20 2871
    BCL11A-2387 + AAGAAAAUGGGGGGGUAGGG 20 2872
    BCL11A-2388 + UAAGAAAAUGGGGGGGUAGG 20 2873
    BCL11A-2389 + CGUAAGAAAAUGGGGGGGUA 20 2874
    BCL11A-2390 + CCGUAAGAAAAUGGGGGGGU 20 2875
    BCL11A-2391 + ACCGUAAGAAAAUGGGGGGG 20 2876
    BCL11A-2392 + CACUCACCGUAAGAAAAUGG 20 2877
    BCL11A-2393 + CCACUCACCGUAAGAAAAUG 20 2878
    BCL11A-2394 + CCCACUCACCGUAAGAAAAU 20 2879
    BCL11A-2395 + UCCCACUCACCGUAAGAAAA 20 2880
    BCL11A-2396 + UUCCCACUCACCGUAAGAAA 20 2881
    BCL11A-2397 + GGUUGCUUCCCACUCACCGU 20 2882
    BCL11A-2398 + GGUGGGAGCUGGUGGGGAAA 20 2883
    BCL11A-2399 + GGGUGGGAGCUGGUGGGGAA 20 2884
    BCL11A-2400 + GGGGUGGGAGCUGGUGGGGA 20 2885
    BCL11A-2401 + CCUGGGGGUGGGAGCUGGUG 20 2886
    BCL11A-2402 + ACCUGGGGGUGGGAGCUGGU 20 2887
    BCL11A-2403 + AACCUGGGGGUGGGAGCUGG 20 2888
    BCL11A-2404 + AAACCUGGGGGUGGGAGCUG 20 2889
    BCL11A-2405 + UCACAUGCAAACCUGGGGGU 20 2890
    BCL11A-2406 + CUCACAUGCAAACCUGGGGG 20 2891
    BCL11A-2407 + ACUCACAUGCAAACCUGGGG 20 2892
    BCL11A-2408 + AACAACUCACAUGCAAACCU 20 2893
    BCL11A-2409 + GAACAACUCACAUGCAAACC 20 2894
    BCL11A-2410 + CGAACAACUCACAUGCAAAC 20 2895
    BCL11A-2411 + UAAUGAACAAUGCUAAGGUU 20 2896
    BCL11A-2412 + CCCGCCAGUUUUGCAAAAUA 20 2897
    BCL11A-2413 + CUUUAUUUCUCUUUUCGAAA 20 2898
    BCL11A-2414 + GCUUUAUUUCUCUUUUCGAA 20 2899
    BCL11A-2415 + CCGCCGCUUUAUUUCUCUUU 20 2900
    BCL11A-2416 + CCAUUGCCGUGUAUGCACUU 20 2901
    BCL11A-2417 + GAAAAAACCCUCAUCCCAUC 20 2902
    BCL11A-2418 + GGAAAAAACCCUCAUCCCAU 20 2903
    BCL11A-2419 + CGAGGUAAAAGAGAUAAAGG 20 2904
    BCL11A-2420 + UCGAGGUAAAAGAGAUAAAG 20 2905
    BCL11A-2421 + GUCGAGGUAAAAGAGAUAAA 20 2906
    BCL11A-2422 + AGUCGAGGUAAAAGAGAUAA 20 2907
    BCL11A-2423 + GAGUCGAGGUAAAAGAGAUA 20 2908
    BCL11A-2424 + ACCUCCGAGAGUCGAGGUAA 20 2909
    BCL11A-2425 + ACGAGAAAAACCUCCGAGAG 20 2910
    BCL11A-2426 + UUUUCACGAGAAAAACCUCC 20 2911
    BCL11A-2427 + AUUUUUCACGAGAAAAACCU 20 2912
    BCL11A-2428 + UGCAUUUUUAAAUUUUUCAC 20 2913
    BCL11A-2429 + CAUGCAUUUUUAAAUUUUUC 20 2914
    BCL11A-2430 + AGCAAAAGCGAGGGGGAGAG 20 2915
    BCL11A-2431 + AAGCAAAAGCGAGGGGGAGA 20 2916
    BCL11A-2432 + AGAAGCAAAAGCGAGGGGGA 20 2917
    BCL11A-2433 + CUAGAAGCAAAAGCGAGGGG 20 2918
    BCL11A-2434 + GACUAGAAGCAAAAGCGAGG 20 2919
    BCL11A-2435 + GGACUAGAAGCAAAAGCGAG 20 2920
    BCL11A-2436 + AGGACUAGAAGCAAAAGCGA 20 2921
    BCL11A-2437 + CAGGACUAGAAGCAAAAGCG 20 2922
    BCL11A-2438 + GCAGGACUAGAAGCAAAAGC 20 2923
    BCL11A-2439 + GCGCAGGACUAGAAGCAAAA 20 2924
    BCL11A-2440 + AUCACGAGAGCGCGCAGGAC 20 2925
    BCL11A-2441 + UUAAUAAUCACGAGAGCGCG 20 2926
    BCL11A-2442 + UAAUAAUUAUUAAUAAUCAC 20 2927
    BCL11A-2443 + AAUAAUAAUUAUUAAUAAUC 20 2928
    BCL11A-2444 + ACCUCAGAGGCAGCAAG 17 2929
    BCL11A-2445 + GAACCUCAGAGGCAGCA 17 2930
    BCL11A-2446 + CGAACCUCAGAGGCAGC 17 2931
    BCL11A-2447 + CCCUCCCGACCGAACCU 17 2932
    BCL11A-2448 + CUGCCCUCCCCUCCCGA 17 2933
    BCL11A-2449 + GCCCGGACUGCUGCCUC 17 2934
    BCL11A-2450 + AGAGGGAGGGAGGGAGC 17 2935
    BCL11A-2451 + CGCGGGAGAGGGAGGGA 17 2936
    BCL11A-2452 + ACGCGGGAGAGGGAGGG 17 2937
    BCL11A-2453 + CACGCGGGAGAGGGAGG 17 2938
    BCL11A-2454 + GGCACGCGGGAGAGGGA 17 2939
    BCL11A-2455 + GGGCACGCGGGAGAGGG 17 2940
    BCL11A-2456 + GGGGCACGCGGGAGAGG 17 2941
    BCL11A-2457 + CGGGGGCACGCGGGAGA 17 2942
    BCL11A-2458 + CCGGGGGCACGCGGGAG 17 2943
    BCL11A-2459 + GCCGGGGGCACGCGGGA 17 2944
    BCL11A-2460 + CGGCCGGGGGCACGCGG 17 2945
    BCL11A-2461 + GGCGGCCGGGGGCACGC 17 2946
    BCL11A-2462 + AGGCGGCCGGGGGCACG 17 2947
    BCL11A-2463 + GAGGCGGCCGGGGGCAC 17 2948
    BCL11A-2464 + CGGGGGAGGAGGCGGCC 17 2949
    BCL11A-2465 + CCGGGGGAGGAGGCGGC 17 2950
    BCL11A-2466 + GCCGGGGGAGGAGGCGG 17 2951
    BCL11A-2467 + GGAGCUAGGGCCGGGGG 17 2952
    BCL11A-2468 + AGGAGCUAGGGCCGGGG 17 2953
    BCL11A-2469 + GCAGGAGCUAGGGCCGG 17 2954
    BCL11A-2470 + GGCAGGAGCUAGGGCCG 17 2955
    BCL11A-2471 + GGGCAGGAGCUAGGGCC 17 2956
    BCL11A-2472 + AGGGCAGGAGCUAGGGC 17 2957
    BCL11A-2473 + AAGGGCAGGAGCUAGGG 17 2958
    BCL11A-2474 + CGCCGAAGGGCAGGAGC 17 2959
    BCL11A-2475 + CGCCGCCGCCGAAGGGC 17 2960
    BCL11A-2476 + CCGCCGCCGCCGAAGGG 17 2961
    BCL11A-2477 + CGCCGCCGCCGCCGCCG 17 2962
    BCL11A-2478 + CGCCGCCGCCGCCGCCG 17 2963
    BCL11A-2479 + UUUUGUUCCGGCCAGAG 17 2964
    BCL11A-2480 + CCGCCUUUUGUUCCGGC 17 2965
    BCL11A-2481 + GUGGGACCGGGAAGGAC 17 2966
    BCL11A-2482 + CGUGGGACCGGGAAGGA 17 2967
    BCL11A-2483 + CCGUGGGACCGGGAAGG 17 2968
    BCL11A-2484 + AGAGCCGUGGGACCGGG 17 2969
    BCL11A-2485 + GGGAGAGCCGUGGGACC 17 2970
    BCL11A-2486 + GGGGAGAGCCGUGGGAC 17 2971
    BCL11A-2487 + CGGGGAGAGCCGUGGGA 17 2972
    BCL11A-2488 + GGCGACGGGGAGAGCCG 17 2973
    BCL11A-2489 + CGGCGACGGGGAGAGCC 17 2974
    BCL11A-2490 + GGGGCCGCGGCGACGGG 17 2975
    BCL11A-2491 + GAGGGGCCGCGGCGACG 17 2976
    BCL11A-2492 + AGAGGGGCCGCGGCGAC 17 2977
    BCL11A-2493 + GAGAGGGGCCGCGGCGA 17 2978
    BCL11A-2494 + GGAGAGGGGCCGCGGCG 17 2979
    BCL11A-2495 + GUCCGCGGAGUCGGGAG 17 2980
    BCL11A-2496 + AGUCCGCGGAGUCGGGA 17 2981
    BCL11A-2497 + UGAGUCCGCGGAGUCGG 17 2982
    BCL11A-2498 + CCUGAGUCCGCGGAGUC 17 2983
    BCL11A-2499 + UCCUGAGUCCGCGGAGU 17 2984
    BCL11A-2500 + CUCCUGAGUCCGCGGAG 17 2985
    BCL11A-2501 + CGGCGCUCCUGAGUCCG 17 2986
    BCL11A-2502 + CCGGCGCUCCUGAGUCC 17 2987
    BCL11A-2503 + AGGGGCCCCCGGCGCUC 17 2988
    BCL11A-2504 + AAAGUGGCACUGUGGAA 17 2989
    BCL11A-2505 + GAAAGUGGCACUGUGGA 17 2990
    BCL11A-2506 + GUGAGAAAGUGGCACUG 17 2991
    BCL11A-2507 + AGUGAGAAAGUGGCACU 17 2992
    BCL11A-2508 + GUCAUCCCCACAAUAGU 17 2993
    BCL11A-2509 + UAGUCAUCCCCACAAUA 17 2994
    BCL11A-2510 + GUCAAGUGUGCAGCGGG 17 2995
    BCL11A-2511 + GGUCAAGUGUGCAGCGG 17 2996
    BCL11A-2512 + ACGGUCAAGUGUGCAGC 17 2997
    BCL11A-2513 + CACGGUCAAGUGUGCAG 17 2998
    BCL11A-2514 + UCACGGUCAAGUGUGCA 17 2999
    BCL11A-2515 + AGAGGUGAGACUGGCUU 17 3000
    BCL11A-2516 + UCCCGGGGAGAAAAGAG 17 3001
    BCL11A-2517 + ACGAUUCCCGGGGAGAA 17 3002
    BCL11A-2518 + AAAAAACGAUUCCCGGG 17 3003
    BCL11A-2519 + CUAAAAAACGAUUCCCG 17 3004
    BCL11A-2520 + UCUAAAAAACGAUUCCC 17 3005
    BCL11A-2521 + GUCUAAAAAACGAUUCC 17 3006
    BCL11A-2522 + AGUCUAAAAAACGAUUC 17 3007
    BCL11A-2523 + GGGGGGGUAGGGAGGGA 17 3008
    BCL11A-2524 + AAAUGGGGGGGUAGGGA 17 3009
    BCL11A-2525 + AAAAUGGGGGGGUAGGG 17 3010
    BCL11A-2526 + GAAAAUGGGGGGGUAGG 17 3011
    BCL11A-2527 + AAGAAAAUGGGGGGGUA 17 3012
    BCL11A-2528 + UAAGAAAAUGGGGGGGU 17 3013
    BCL11A-2529 + GUAAGAAAAUGGGGGGG 17 3014
    BCL11A-2530 + UCACCGUAAGAAAAUGG 17 3015
    BCL11A-2531 + CUCACCGUAAGAAAAUG 17 3016
    BCL11A-2532 + ACUCACCGUAAGAAAAU 17 3017
    BCL11A-2533 + CACUCACCGUAAGAAAA 17 3018
    BCL11A-2534 + CCACUCACCGUAAGAAA 17 3019
    BCL11A-2535 + UGCUUCCCACUCACCGU 17 3020
    BCL11A-2536 + GGGAGCUGGUGGGGAAA 17 3021
    BCL11A-2537 + UGGGAGCUGGUGGGGAA 17 3022
    BCL11A-2538 + GUGGGAGCUGGUGGGGA 17 3023
    BCL11A-2539 + GGGGGUGGGAGCUGGUG 17 3024
    BCL11A-2540 + UGGGGGUGGGAGCUGGU 17 3025
    BCL11A-2541 + CUGGGGGUGGGAGCUGG 17 3026
    BCL11A-2542 + CCUGGGGGUGGGAGCUG 17 3027
    BCL11A-2543 + CAUGCAAACCUGGGGGU 17 3028
    BCL11A-2544 + ACAUGCAAACCUGGGGG 17 3029
    BCL11A-2545 + CACAUGCAAACCUGGGG 17 3030
    BCL11A-2546 + AACUCACAUGCAAACCU 17 3031
    BCL11A-2547 + CAACUCACAUGCAAACC 17 3032
    BCL11A-2548 + ACAACUCACAUGCAAAC 17 3033
    BCL11A-2549 + UGAACAAUGCUAAGGUU 17 3034
    BCL11A-2550 + GCCAGUUUUGCAAAAUA 17 3035
    BCL11A-2551 + UAUUUCUCUUUUCGAAA 17 3036
    BCL11A-2552 + UUAUUUCUCUUUUCGAA 17 3037
    BCL11A-2553 + CCGCUUUAUUUCUCUUU 17 3038
    BCL11A-2554 + UUGCCGUGUAUGCACUU 17 3039
    BCL11A-2555 + AAAACCCUCAUCCCAUC 17 3040
    BCL11A-2556 + AAAAACCCUCAUCCCAU 17 3041
    BCL11A-2557 + GGUAAAAGAGAUAAAGG 17 3042
    BCL11A-2558 + AGGUAAAAGAGAUAAAG 17 3043
    BCL11A-2559 + GAGGUAAAAGAGAUAAA 17 3044
    BCL11A-2560 + CGAGGUAAAAGAGAUAA 17 3045
    BCL11A-2561 + UCGAGGUAAAAGAGAUA 17 3046
    BCL11A-2562 + UCCGAGAGUCGAGGUAA 17 3047
    BCL11A-2563 + AGAAAAACCUCCGAGAG 17 3048
    BCL11A-2564 + UCACGAGAAAAACCUCC 17 3049
    BCL11A-2565 + UUUCACGAGAAAAACCU 17 3050
    BCL11A-2566 + AUUUUUAAAUUUUUCAC 17 3051
    BCL11A-2567 + GCAUUUUUAAAUUUUUC 17 3052
    BCL11A-2568 + AAAAGCGAGGGGGAGAG 17 3053
    BCL11A-2569 + CAAAAGCGAGGGGGAGA 17 3054
    BCL11A-2570 + AGCAAAAGCGAGGGGGA 17 3055
    BCL11A-2571 + GAAGCAAAAGCGAGGGG 17 3056
    BCL11A-2572 + UAGAAGCAAAAGCGAGG 17 3057
    BCL11A-2573 + CUAGAAGCAAAAGCGAG 17 3058
    BCL11A-2574 + ACUAGAAGCAAAAGCGA 17 3059
    BCL11A-2575 + GACUAGAAGCAAAAGCG 17 3060
    BCL11A-2576 + GGACUAGAAGCAAAAGC 17 3061
    BCL11A-2577 + CAGGACUAGAAGCAAAA 17 3062
    BCL11A-2578 + ACGAGAGCGCGCAGGAC 17 3063
    BCL11A-2579 + AUAAUCACGAGAGCGCG 17 3064
    BCL11A-2580 + UAAUUAUUAAUAAUCAC 17 3065
    BCL11A-2581 + AAUAAUUAUUAAUAAUC 17 3066
  • Table 3C provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCL11A gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the BCL11A gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 3C
    N. meningitidis gRNA targets for
    BCL11A knockdown
    Target SEQ
    DNA Targeting Site ID
    gRNA Name Strand Domain Length NO
    BCL11A-2582 GCUUCUAGUC 20 3067
    CUGCGCGCUC
    BCL11A-2583 UCUAGUCCUG 17 3068
    CGCGCUC
    BCL11A-2584 + UUUAGACUUG 20 3069
    UACUCACUCC
    BCL11A-2585 + CAUUCCUUUU 20 3070
    CGAAAAGAGA
    BCL11A-2586 + UUUAGACUUG 17 3071
    UACUCAC
    BCL11A-2587 + CAUUCCUUUU 17 3072
    CGAAAAG
  • Table 4A provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to first tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary gRNA pairs are: BCL11A-2607 and BCL11A-2593, BCL11A-2607 and BCL11A-2598, BCL11A-264 and BCL11A-2593, BCL11A-2614 and BCL11A-2598, BCL11A-2589 and BCL11A-2664, BCL11A-2589 and BCL11A-2666, BCL11A-2596 and BCL11A-2664, BCL11A-2596 and BCL11A-2666, BCL11A-2603 and BCL11A-2664, of BCL11A-2603 and BCL11A-2666.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene. For example, gRNA pairs that target upstream (i.e., 5′) of the enhancer region in the BCL11A gene (e.g., 2607 and BCL11A-2593, BCL11A-2607 and BCL11A-2598, BCL11A-264 and BCL11A-2593, or BCL11A-2614 and BCL11A-2598) can be paired with gRNA pairs that target downstream (i.e., 3′) of the enhancer region in the BCL11A gene (e.g., BCL11A-2589 and BCL11A-2664, BCL11A-2589 and BCL11A-2666, BCL11A-2596 and BCL11A-2664, BCL11A-2596 and BCL11A-2666, BCL11A-2603 and BCL11A-2664, of BCL11A-2603 and BCL11A-2666).
  • TABLE 4A
    Target SEQ
    1st Tier DNA Targeting Site ID
    gRNA Name Strand Domain Length NO
    BCL11A-2588 + GAGCUCCAUG 20 3073
    UGCAGAACGA
    BCL11A-2589 + GAGCUCCCAA 17 3074
    CGGGCCG
    BCL11A-2590 GAGUGCAGAA 20 3075
    UAUGCCCCGC
    BCL11A-2591 + GAUAAACAAU 20 3076
    CGUCAUCCUC
    BCL11A-2592 + GAUGCCAACC 20 3077
    UCCACGGGAU
    BCL11A-2593 GCAGAAUAUG 17 3078
    CCCCGCA
    BCL11A-2594 GCAUCCAAUC 20 3079
    CCGUGGAGGU
    BCL11A-2595 + GCCAACCUCC 17 3080
    ACGGGAU
    BCL11A-2596 + GCUCCCAACG 20 3081
    GGCCGUGGUC
    BCL11A-2597 GGAGCUCUAA 20 3082
    UCCCCACGCC
  • Table 4B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 4B
    Target SEQ
    2nd Tier DNA Targeting Site ID
    gRNA Name Strand Domain Length NO
    BCL11A-2598 AGCAUCCAAU 17 3083
    CCCGUGG
    BCL11A-2599 AGUGCAGAAU 20 3084
    AUGCCCCGCA
    BCL11A-2600 AUGUCUCGCC 17 3085
    GCAAGCA
    BCL11A-2601 + AUUCCCGUUU 20 3086
    GCUUAAGUGC
    BCL11A-2602 + CAUCCUCUGG 17 3087
    CGUGACC
    BCL11A-2603 + CCCAACGGGC 17 3088
    CGUGGUC
    BCL11A-2604 + CCCCCAAUGG 20 3089
    GAAGUUCAUC
    BCL11A-2605 + CCCGUUUGCU 17 3090
    UAAGUGC
    BCL11A-2606 + CGUCAUCCUC 20 3091
    UGGCGUGACC
    BCL11A-2607 + UCAUCUCGAU 17 3092
    UGGUGAA
    BCL11A-2608 UCCAAUCCCG 17 3093
    UGGAGGU
    BCL11A-2609 + UCCCGUUUGC 20 3094
    UUAAGUGCUG
    BCL11A-2610 UGAACCAGAC 20 3095
    CACGGCCCGU
    BCL11A-2611 UGCAGAAUAU 17 3096
    GCCCCGC
    BCL11A-2612 UGGCAUCCAG 20 3097
    GUCACGCCAG
    BCL11A-2613 UUAUCAACGU 17 3098
    CAUCUAG
    BCL11A-2614 + UUCAUCUCGA 17 3099
    UUGGUGA
  • Table 4C provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to third tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 4C
    3rd Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-2615 GAAAAAAGCAUCCAAUCCCG 20 3100
    BCL11A-2616 GAACCAGACCACGGCCCGUU 20 3101
    BCL11A-2617 + GACCUGGAUGCCAACCUCCA 20 3102
    BCL11A-2618 GAGCUCUAAUCCCCACGCCU 20 3103
    BCL11A-2619 GAUCAUGACCUCCUCACCUG 20 3104
    BCL11A-2620 GAUGAACUUCCCAUUGG 17 3105
    BCL11A-2621 GAUGAUGAACCAGACCA 17 3106
    BCL11A-2622 + GAUGCUUUUUUCAUCUCGAU 20 3107
    BCL11A-2623 + GCACUCAUCCCAGGCGU 17 3108
    BCL11A-2624 + GCAUAUUCUGCACUCAUCCC 20 3109
    BCL11A-2625 GCCAGAUGAACUUCCCAUUG 20 3110
    BCL11A-2626 GCCCGUUGGGAGCUCCAGAA 20 3111
    BCL11A-2627 + GCUAUGUGUUCCUGUUU 17 3112
    BCL11A-2628 + GCUCCAUGUGCAGAACG 17 3113
    BCL11A-2629 GCUCUAAUCCCCACGCC 17 3114
    BCL11A-2630 + GCUGGGGUUUGCCUUGCUUG 20 3115
    BCL11A-2631 + GCUUUUUUCAUCUCGAU 17 3116
    BCL11A-2632 + GGCACUGCCCACAGGUG 17 3117
    BCL11A-2633 + GGCACUGCCCACAGGUGAGG 20 3118
    BCL11A-2634 GGCCCGUUGGGAGCUCCAGA 20 3119
    BCL11A-2635 + GGGGUUUGCCUUGCUUG 17 3120
    BCL11A-2636 + GUAAGAAUGGCUUCAAG 17 3121
    BCL11A-2637 + GUGCAGAACGAGGGGAGGAG 20 3122
    BCL11A-2638 GUGCCAGAUGAACUUCCCAU 20 3123
    BCL11A-2639 + GUUCAUCUGGCACUGCCCAC 20 3124
    BCL11A-2640 GUUGGGAGCUCCAGAAG 17 3125
  • Table 4D provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to forth tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL0A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 4D
    4th Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-2641 AAAAGCAUCCAAUCCCG 17 3126
    BCL11A-2642 AAAAGCAUCCAAUCCCGUGG 20 3127
    BCL11A-2643 + AAAAUAAGAAUGUCCCCCAA 20 3128
    BCL11A-2644 + AAACAAUCGUCAUCCUC 17 3129
    BCL11A-2645 AAACGGAAACAAUGCAA 17 3130
    BCL11A-2646 AAACUUCUGCACUGGAG 17 3131
    BCL11A-2647 + AAAUAAGAAUGUCCCCCAAU 20 3132
    BCL11A-2648 AACCCCAGCACUUAAGCAAA 20 3133
    BCL11A-2649 + AAGAAUGGCUUCAAGAGGCU 20 3134
    BCL11A-2650 + AAUGGCUUCAAGAGGCU 17 3135
    BCL11A-2651 ACAGAUGAUGAACCAGACCA 20 3136
    BCL11A-2652 ACCAGACCACGGCCCGU 17 3137
    BCL11A-2653 ACCCCAGCACUUAAGCAAAC 20 3138
    BCL11A-2654 + ACCUGGAUGCCAACCUCCAC 20 3139
    BCL11A-2655 + ACUGCCCACAGGUGAGG 17 3140
    BCL11A-2656 + AGAGCUCCAUGUGCAGAACG 20 3141
    BCL11A-2657 AGAUGAACUUCCCAUUG 17 3142
    BCL11A-2658 + AGCUCCAUGUGCAGAACGAG 20 3143
    BCL11A-2659 AGGAAUUUGCCCCAAAC 17 3144
    BCL11A-2660 + AGGAGGUCAUGAUCCCCUUC 20 3145
    BCL11A-2661 + AGGUCAUGAUCCCCUUC 17 3146
    BCL11A-2662 AUAAACUUCUGCACUGG 17 3147
    BCL11A-2663 + AUAAGAAUGUCCCCCAA 17 3148
    BCL11A-2664 AUCAUGACCUCCUCACCUGU 20 3149
    BCL11A-2665 + AUCUCGAUUGGUGAAGGGGA 20 3150
    BCL11A-2666 AUGACCUCCUCACCUGU 17 3151
    BCL11A-2667 + AUGUGCAGAACGAGGGG 17 3152
    BCL11A-2668 + AUUGGUGAAGGGGAAGG 17 3153
    BCL11A-2669 CACAAACGGAAACAAUGCAA 20 3154
    BCL11A-2670 + CACUCAUCCCAGGCGUG 17 3155
    BCL11A-2671 + CAGAACGAGGGGAGGAG 17 3156
    BCL11A-2672 CAGAUGAACUUCCCAUU 17 3157
    BCL11A-2673 + CAGCUUUUUCUAAGCAG 17 3158
    BCL11A-2674 CAUCCAGGUCACGCCAG 17 3159
    BCL11A-2675 + CAUCUCGAUUGGUGAAG 17 3160
    BCL11A-2676 + CAUCUGGCACUGCCCAC 17 3161
    BCL11A-2677 CAUGACCUCCUCACCUG 17 3162
    BCL11A-2678 + CCAAUGGGAAGUUCAUC 17 3163
    BCL11A-2679 + CCACAGCUUUUUCUAAGCAG 20 3164
    BCL11A-2680 CCAGACCACGGCCCGUU 17 3165
    BCL11A-2681 CCAGAUGAACUUCCCAU 17 3166
    BCL11A-2682 CCAGAUGAACUUCCCAUUGG 20 3167
    BCL11A-2683 CCAGCACUUAAGCAAAC 17 3168
    BCL11A-2684 CCCAGCACUUAAGCAAA 17 3169
    BCL11A-2685 + CCCCUUCUGGAGCUCCCAAC 20 3170
    BCL11A-2686 CCCGUUGGGAGCUCCAGAAG 20 3171
    BCL11A-2687 CCGUUGGGAGCUCCAGA 17 3172
    BCL11A-2688 + CCGUUUGCUUAAGUGCU 17 3173
    BCL11A-2689 CCUCUGCUUAGAAAAAGCUG 20 3174
    BCL11A-2690 + CCUUCUGGAGCUCCCAA 17 3175
    BCL11A-2691 CGUGGAGGUUGGCAUCC 17 3176
    BCL11A-2692 CGUUGGGAGCUCCAGAA 17 3177
    BCL11A-2693 + CGUUUGCUUAAGUGCUG 17 3178
    BCL11A-2694 + CUAUGUGUUCCUGUUUG 17 3179
    BCL11A-2695 + CUCCAUGUGCAGAACGA 17 3180
    BCL11A-2696 CUCUAAUCCCCACGCCU 17 3181
    BCL11A-2697 + CUGCACUCAUCCCAGGCGUG 20 3182
    BCL11A-2698 + CUGCUAUGUGUUCCUGUUUG 20 3183
    BCL11A-2699 CUGCUUAGAAAAAGCUG 17 3184
    BCL11A-2700 + CUGGAGCUCCCAACGGGCCG 20 3185
    BCL11A-2701 + CUGGAUGCCAACCUCCA 17 3186
    BCL11A-2702 + CUUCUGGAGCUCCCAAC 17 3187
    BCL11A-2703 UAAACUUCUGCACUGGA 17 3188
    BCL11A-2704 + UAAGAAUGUCCCCCAAU 17 3189
    BCL11A-2705 UAGAGGAAUUUGCCCCAAAC 20 3190
    BCL11A-2706 + UAUUCUGCACUCAUCCC 17 3191
    BCL11A-2707 + UCCAUGUGCAGAACGAG 17 3192
    BCL11A-2708 + UCCAUGUGCAGAACGAGGGG 20 3193
    BCL11A-2709 UCCCCUCGUUCUGCACA 17 3194
    BCL11A-2710 + UCCCCUUCUGGAGCUCCCAA 20 3195
    BCL11A-2711 UCCCGUGGAGGUUGGCAUCC 20 3196
    BCL11A-2712 UCCUCCCCUCGUUCUGCACA 20 3197
    BCL11A-2713 + UCGAUUGGUGAAGGGGA 17 3198
    BCL11A-2714 + UCGAUUGGUGAAGGGGAAGG 20 3199
    BCL11A-2715 + UCUGCACUCAUCCCAGGCGU 20 3200
    BCL11A-2716 + UCUGGCACUGCCCACAGGUG 20 3201
    BCL11A-2717 + UCUGUAAGAAUGGCUUCAAG 20 3202
    BCL11A-2718 + UGCACUCAUCCCAGGCG 17 3203
    BCL11A-2719 UGCCAGAUGAACUUCCCAUU 20 3204
    BCL11A-2720 + UGCUAUGUGUUCCUGUU 17 3205
    BCL11A-2721 + UGGAUGCCAACCUCCAC 17 3206
    BCL11A-2722 + UGGUUCAUCAUCUGUAAGAA 20 3207
    BCL11A-2723 UGUUUAUCAACGUCAUCUAG 20 3208
    BCL11A-2724 UUAUUUUUAUCGAGCACAAA 20 3209
    BCL11A-2725 + UUCAUCAUCUGUAAGAA 17 3210
    BCL11A-2726 + UUCCCGUUUGCUUAAGUGCU 20 3211
    BCL11A-2727 + UUCUGCACUCAUCCCAGGCG 20 3212
    BCL11A-2728 + UUUCAUCUCGAUUGGUGAAG 20 3213
    BCL11A-2729 + UUUUCAUCUCGAUUGGUGAA 20 3214
    BCL11A-2730 UUUUUAUCGAGCACAAA 17 3215
    BCL11A-2731 + UUUUUCAUCUCGAUUGGUGA 20 3216
  • Table 4E provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to fifth tier parameters. The targeting domains outside the first 500 bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL23A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL3A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 4E
    5th Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-2732 + UAUGCGGUCCGACUCGC 17 3217
    BCL11A-2733 UCGGACCGCAUAGACGA 17 3218
    BCL11A-2734 + UGGGUACUACGCCGAAU 17 3219
    BCL11A-2735 + GGUACUACGCCGAAUGG 17 3220
    BCL11A-2736 UUGCGACGAAGACUCGG 17 3221
    BCL11A-2737 + CUGGGUACUACGCCGAA 17 3222
    BCL11A-2738 + GGGUACUACGCCGAAUG 17 3223
    BCL11A-2739 + UCGGACUUGACCGUCAU 17 3224
    BCL11A-2740 + AGGGAUACCAACCCGCG 17 3225
    BCL11A-2741 CGCGCUCAAGUCCGUGG 17 3226
    BCL11A-2742 + CGAGGAGUGCUCCGACG 17 3227
    BCL11A-2743 + GUCGGACUUGACCGUCA 17 3228
    BCL11A-2744 + UGCACGCGUGGUCGCAC 17 3229
    BCL11A-2745 CAGCGCGCUCAAGUCCG 17 3230
    BCL11A-2746 + UACCAACCCGCGGGGUC 17 3231
    BCL11A-2747 GUGGCUCGCCGGCUACG 17 3232
    BCL11A-2748 + CGGACUUGACCGUCAUG 17 3233
    BCL11A-2749 CACCGCAUAGAGCGCCU 17 3234
    BCL11A-2750 GCGCAUCAAGCUCGAGA 17 3235
    BCL11A-2751 + GGCCCGGACCACUAAUA 17 3236
    BCL11A-2752 + GCCCGGACCACUAAUAU 17 3237
    BCL11A-2753 GCAUAAGCGCGGCCACC 17 3238
    BCL11A-2754 + AGGCGCUCUAUGCGGUG 17 3239
    BCL11A-2755 ACGGUCAAGUCCGACGA 17 3240
    BCL11A-2756 + CGAGGCCGACUCGCCCG 17 3241
    BCL11A-2757 ACCGCAUAGAGCGCCUG 17 3242
    BCL11A-2758 CGACCACGCGUGCACCC 17 3243
    BCL11A-2759 + GUACACGUUCUCCGUGU 17 3244
    BCL11A-2760 CACUUGCGACGAAGACU 17 3245
    BCL11A-2761 CGGGUUGGUAUCCCUUC 17 3246
    BCL11A-2762 CUCGUCGGAGCACUCCU 17 3247
    BCL11A-2763 + CCCGGACCACUAAUAUG 17 3248
    BCL11A-2764 + UCGGUGGUGGACUAAAC 17 3249
    BCL11A-2765 + CAGGCGCUCUAUGCGGU 17 3250
    BCL11A-2766 + AAGGGAUACCAACCCGC 17 3251
    BCL11A-2767 + GGCGCUCUAUGCGGUGG 17 3252
    BCL11A-2768 CCACCGCAUAGAGCGCC 17 3253
    BCL11A-2769 UACUCGCAGUGGCUCGC 17 3254
    BCL11A-2770 CGGGCGAGUCGGCCUCG 17 3255
    BCL11A-2771 + UACACGUUCUCCGUGUU 17 3256
    BCL11A-2772 AGCACGCCCCAUAUUAG 17 3257
    BCL11A-2773 + GAAGGGAUACCAACCCG 17 3258
    BCL11A-2774 + UUGGGCAUCGCGGCCGG 17 3259
    BCL11A-2775 CCGGGCGAGUCGGCCUC 17 3260
    BCL11A-2776 + GGUGGAGAGACCGUCGU 17 3261
    BCL11A-2777 + GUUGGGCAUCGCGGCCG 17 3262
    BCL11A-2778 AGAACGUGUACUCGCAG 17 3263
    BCL11A-2779 + ACCAACCCGCGGGGUCA 17 3264
    BCL11A-2780 CACGAGAACAGCUCGCG 17 3265
    BCL11A-2781 UAUUAGUGGUCCGGGCC 17 3266
    BCL11A-2782 + CGUCGCAAGUGUCCCUG 17 3267
    BCL11A-2783 + CCCGCGAGCUGUUCUCG 17 3268
    BCL11A-2784 + UGCGCCGGUGCACCACC 17 3269
    BCL11A-2785 CUGCCCGACGUCAUGCA 17 3270
    BCL11A-2786 GACGAAGACUCGGUGGC 17 3271
    BCL11A-2787 CCUGCCCGACGUCAUGC 17 3272
    BCL11A-2788 + AAGGGCGGCUUGCUACC 17 3273
    BCL11A-2789 GGGUGGACUACGGCUUC 17 3274
    BCL11A-2790 + UCGCUGGUGCCGGGUUC 17 3275
    BCL11A-2791 GGCGAGAAGCAUAAGCG 17 3276
    BCL11A-2792 + GGACUUGAGCGCGCUGC 17 3277
    BCL11A-2793 CUCGGUGGCCGGCGAGU 17 3278
    BCL11A-2794 + CCCGAGGCCGACUCGCC 17 3279
    BCL11A-2795 CCCGGGCGAGUCGGCCU 17 3280
    BCL11A-2796 CCGCAUAGAGCGCCUGG 17 3281
    BCL11A-2797 + UGUUGGGCAUCGCGGCC 17 3282
    BCL11A-2798 + GUGUUGGGCAUCGCGGC 17 3283
    BCL11A-2799 + UCUCUCGAUACUGAUCC 17 3284
    BCL11A-2800 ACCCGAGUGCCUUUGAC 17 3285
    BCL11A-2801 + UCCGACGAGGAGGCAAA 17 3286
    BCL11A-2802 ACCCGGCACCAGCGACU 17 3287
    BCL11A-2803 + CCCCGUUCUCCGGGAUC 17 3288
    BCL11A-2804 + CCGAGGCCGACUCGCCC 17 3289
    BCL11A-2805 CCCCAUAUUAGUGGUCC 17 3290
    BCL11A-2806 + GACUUGGACUUGACCGG 17 3291
    BCL11A-2807 GCCCCAUAUUAGUGGUC 17 3292
    BCL11A-2808 AGGGUGGACUACGGCUU 17 3293
    BCL11A-2809 CAAAUCGUCCCCCAUGA 17 3294
    BCL11A-2810 CGACGUCAUGCAGGGCA 17 3295
    BCL11A-2811 GGCCGCGAUGCCCAACA 17 3296
    BCL11A-2812 + CCAGGCGCUCUAUGCGG 17 3297
    BCL11A-2813 CCUGAUCCCGGAGAACG 17 3298
    BCL11A-2814 + CCAACCCGCGGGGUCAG 17 3299
    BCL11A-2815 GGCGAGUCGGCCUCGGG 17 3300
    BCL11A-2816 + GGCAAAAGGCGAUUGUC 17 3301
    BCL11A-2817 + UUUGGACAGGCCCCCCG 17 3302
    BCL11A-2818 + GCGGCUUGCUACCUGGC 17 3303
    BCL11A-2819 + GGACUUGACCGUCAUGG 17 3304
    BCL11A-2820 + GGAGUGCUCCGACGAGG 17 3305
    BCL11A-2821 AUUAGUGGUCCGGGCCC 17 3306
    BCL11A-2822 CCACGAGAACAGCUCGC 17 3307
    BCL11A-2823 GUAUCGAGAGAGGCUUC 17 3308
    BCL11A-2824 + CUCCGUGUUGGGCAUCG 17 3309
    BCL11A-2825 + CAAACUCCCGUUCUCCG 17 3310
    BCL11A-2826 ACCUGAUCCCGGAGAAC 17 3311
    BCL11A-2827 GGCACUGUUAAUGGCCG 17 3312
    BCL11A-2828 + UUCUCCGGGAUCAGGUU 17 3313
    BCL11A-2829 UAUGGAGCCUCCCGCCA 17 3314
    BCL11A-2830 + CUUGAUGCGCUUAGAGA 17 3315
    BCL11A-2831 UAGCAAGCCGCCCUUCC 17 3316
    BCL11A-2832 CCGGCUACGCGGCCUCC 17 3317
    BCL11A-2833 + UCCAAGUGAUGUCUCGG 17 3318
    BCL11A-2834 GAACAGCUCGCGGGGCG 17 3319
    BCL11A-2835 GCUGCGGUUGAAUCCAA 17 3320
    BCL11A-2836 + UGACUUGGACUUGACCG 17 3321
    BCL11A-2837 CCCGGAGAACGGGGACG 17 3322
    BCL11A-2838 + GUGGCGCUUCAGCUUGC 17 3323
    BCL11A-2839 + GUUCUCCGGGAUCAGGU 17 3324
    BCL11A-2840 + CAGUGCCAUCGUCUAUG 17 3325
    BCL11A-2841 + UCUCCGGGAUCAGGUUG 17 3326
    BCL11A-2842 GACGAUGGCACUGUUAA 17 3327
    BCL11A-2843 CUGCUCCCCGGGCGAGU 17 3328
    BCL11A-2844 + CGGUGGUGGACUAAACA 17 3329
    BCL11A-2845 CUCGCGGGGCGCGGUCG 17 3330
    BCL11A-2846 + AUGCCCUGCAUGACGUC 17 3331
    BCL11A-2847 + UGGACUUGACCGGGGGC 17 3332
    BCL11A-2848 ACCACCGAGACAUCACU 17 3333
    BCL11A-2849 GGAGUUCGACCUGCCCC 17 3334
    BCL11A-2850 + CCUGCAUGACGUCGGGC 17 3335
    BCL11A-2851 + CUGCAUGACGUCGGGCA 17 3336
    BCL11A-2852 AGGAUCAGUAUCGAGAG 17 3337
    BCL11A-2853 + GGACUUGACCGGGGGCU 17 3338
    BCL11A-2854 + AAAGGCACUCGGGUGAU 17 3339
    BCL11A-2855 UGGACGGAGGGAUCUCG 17 3340
    BCL11A-2856 + CCCCCAGGCGCUCUAUG 17 3341
    BCL11A-2857 CCGCCAUGGAUUUCUCU 17 3342
    BCL11A-2858 GGCGCGGUCGUGGGCGU 17 3343
    BCL11A-2859 AACCUGAUCCCGGAGAA 17 3344
    BCL11A-2860 + CAUGCCCUGCAUGACGU 17 3345
    BCL11A-2861 + CGCUGGUGCCGGGUUCC 17 3346
    BCL11A-2862 + CCUGGAGGCCGCGUAGC 17 3347
    BCL11A-2863 CCCCUGACCCCGCGGGU 17 3348
    BCL11A-2864 + GCUUAUGCUUCUCGCCC 17 3349
    BCL11A-2865 AAGUCAUGCGAGUUCUG 17 3350
    BCL11A-2866 + CACCAAGUCGCUGGUGC 17 3351
    BCL11A-2867 CCCGAGUGCCUUUGACA 17 3352
    BCL11A-2868 + CAUGACUUGGACUUGAC 17 3353
    BCL11A-2869 CGACCCCAACCUGAUCC 17 3354
    BCL11A-2870 + ACCAAGUCGCUGGUGCC 17 3355
    BCL11A-2871 + AAGUGAUGUCUCGGUGG 17 3356
    BCL11A-2872 CUUCUCCACACCGCCCG 17 3357
    BCL11A-2873 + UGGAGUCUCCGAAGCUA 17 3358
    BCL11A-2874 CGCUUCUCCACACCGCC 17 3359
    BCL11A-2875 + GCUGGUGCCGGGUUCCG 17 3360
    BCL11A-2876 CGCAGCGGCACGGGAAG 17 3361
    BCL11A-2877 + GCAUCGCGGCCGGGGGC 17 3362
    BCL11A-2878 GAGCACUCCUCGGAGAA 17 3363
    BCL11A-2879 + GGGGGGCGUCGCCAGGA 17 3364
    BCL11A-2880 + GAAAGCGCCCUUCUGCC 17 3365
    BCL11A-2881 CUGGACGGAGGGAUCUC 17 3366
    BCL11A-2882 CGGCUUCGGGCUGAGCC 17 3367
    BCL11A-2883 + GGGGGCGUCGCCAGGAA 17 3368
    BCL11A-2884 + UAACCUUUGCAUAGGGC 17 3369
    BCL11A-2885 GGGCGAGUCGGCCUCGG 17 3370
    BCL11A-2886 CACACCGCCCGGGGAGC 17 3371
    BCL11A-2887 GGGAUCUCGGGGCGCAG 17 3372
    BCL11A-2888 + CUCGCUGAAGUGCUGCA 17 3373
    BCL11A-2889 UCGGGGCGCAGCGGCAC 17 3374
    BCL11A-2890 AAGUCCCCUGACCCCGC 17 3375
    BCL11A-2891 GCCUUUUGCCUCCUCGU 17 3376
    BCL11A-2892 CACCUGGCCGAGGCCGA 17 3377
    BCL11A-2893 GGUAUCCCUUCAGGACU 17 3378
    BCL11A-2894 + GUGGUGGACUAAACAGG 17 3379
    BCL11A-2895 + GCGAGCUGUUCUCGUGG 17 3380
    BCL11A-2896 AGCACUCCUCGGAGAAC 17 3381
    BCL11A-2897 CAUGCAGCACUUCAGCG 17 3382
    BCL11A-2898 + UGGCCUGGGUGCACGCG 17 3383
    BCL11A-2899 AGCGAGAGGGUGGACUA 17 3384
    BCL11A-2900 + GCACAGGUUGCACUUGU 17 3385
    BCL11A-2901 + GAGAAAUCCAUGGCGGG 17 3386
    BCL11A-2902 + GCAGAACUCGCAUGACU 17 3387
    BCL11A-2903 + UCUCCGAAGCUAAGGAA 17 3388
    BCL11A-2904 + UGACGUCGGGCAGGGCG 17 3389
    BCL11A-2905 + GGGUCCAAGUGAUGUCU 17 3390
    BCL11A-2906 GCAACCUGGUGGUGCAC 17 3391
    BCL11A-2907 + GGUGGCGCGCCGCCUCC 17 3392
    BCL11A-2908 + GCUGCCCACCAAGUCGC 17 3393
    BCL11A-2909 + GUUCUCGCUCUUGAACU 17 3394
    BCL11A-2910 + CCGCAGCACCCUGUCAA 17 3395
    BCL11A-2911 GAAGUCCCCUGACCCCG 17 3396
    BCL11A-2912 GCGCGGCCACCUGGCCG 17 3397
    BCL11A-2913 + GGCGUCGCCAGGAAGGG 17 3398
    BCL11A-2914 GUUGAAUCCAAUGGCUA 17 3399
    BCL11A-2915 CUCGGGGCGCAGCGGCA 17 3400
    BCL11A-2916 CCGAGGCCGAGGGCCAC 17 3401
    BCL11A-2917 + CUAAACAGGGGGGGAGU 17 3402
    BCL11A-2918 GCGGCACGGGAAGUGGA 17 3403
    BCL11A-2919 + CACAGGUUGCACUUGUA 17 3404
    BCL11A-2920 CAGCGAGGCCUUCCACC 17 3405
    BCL11A-2921 AACCUGCUAAGAAUACC 17 3406
    BCL11A-2922 + AUCCUGGUAUUCUUAGC 17 3407
    BCL11A-2923 + GGUGGUGGACUAAACAG 17 3408
    BCL11A-2924 CGAGGCCGAGGGCCACA 17 3409
    BCL11A-2925 + GUACAUGUGUAGCUGCU 17 3410
    BCL11A-2926 + UUGAUGCGCUUAGAGAA 17 3411
    BCL11A-2927 + UCCUCGUCCCCGUUCUC 17 3412
    BCL11A-2928 + AUGACUUGGACUUGACC 17 3413
    BCL11A-2929 + GUCUCCGAAGCUAAGGA 17 3414
    BCL11A-2930 + GGUGGACUAAACAGGGG 17 3415
    BCL11A-2931 + GCAUGUGCGUCUUCAUG 17 3416
    BCL11A-2932 + GGCACUCGGGUGAUGGG 17 3417
    BCL11A-2933 + AUAGGGCUGGGCCGGCC 17 3418
    BCL11A-2934 + CCGUCCAGCUCCCCGGG 17 3419
    BCL11A-2935 + GCAGUAACCUUUGCAUA 17 3420
    BCL11A-2936 GAUCCCUUCCUUAGCUU 17 3421
    BCL11A-2937 + AAGGGGCUCAGCGAGCU 17 3422
    BCL11A-2938 AGCUGACGGAGAGCGAG 17 3423
    BCL11A-2939 UCGCGGGGCGCGGUCGU 17 3424
    BCL11A-2940 AGCGGCACGGGAAGUGG 17 3425
    BCL11A-2941 + CAAAGGCACUCGGGUGA 17 3426
    BCL11A-2942 + CUGCACCUAGUCCUGAA 17 3427
    BCL11A-2943 GCUGGACGGAGGGAUCU 17 3428
    BCL11A-2944 + CCCUGUCAAAGGCACUC 17 3429
    BCL11A-2945 + AACCUUUGCAUAGGGCU 17 3430
    BCL11A-2946 + CGCCCGGGGAGCAGCCG 17 3431
    BCL11A-2947 + UGGUGGACUAAACAGGG 17 3432
    BCL11A-2948 GGCCCAGCCCUAUGCAA 17 3433
    BCL11A-2949 + CCUCGUCCCCGUUCUCC 17 3434
    BCL11A-2950 GCCAGCUCCCCGGAACC 17 3435
    BCL11A-2951 + GCCGGGUUCCGGGGAGC 17 3436
    BCL11A-2952 + UGCAGUAACCUUUGCAU 17 3437
    BCL11A-2953 + GCUUCUCGCCCAGGACC 17 3438
    BCL11A-2954 CCGCCCGGGGAGCUGGA 17 3439
    BCL11A-2955 CCGGGGAGCUGGACGGA 17 3440
    BCL11A-2956 CUUCCGGCCUGGCAGAA 17 3441
    BCL11A-2957 + CCUAGAGAAAUCCAUGG 17 3442
    BCL11A-2958 + GGAGGGGGGGCGUCGCC 17 3443
    BCL11A-2959 UACUUAGAAAGCGAACA 17 3444
    BCL11A-2960 + GGAGGCUCCAUAGCCAU 17 3445
    BCL11A-2961 + ACACAUCUUGAGCUCUC 17 3446
    BCL11A-2962 GGCACCAGCGACUUGGU 17 3447
    BCL11A-2963 + GGGAUCUUUGAGCUGCC 17 3448
    BCL11A-2964 + GCAGCAGCUUUUUGGAC 17 3449
    BCL11A-2965 + CUGCAAUAUGAAUCCCA 17 3450
    BCL11A-2966 + UCUGCACCUAGUCCUGA 17 3451
    BCL11A-2967 + GAAGGGGCUCAGCGAGC 17 3452
    BCL11A-2968 + UUCCGGGGAGCUGGCGG 17 3453
    BCL11A-2969 GCACCGGCGCAGCCACA 17 3454
    BCL11A-2970 + AUAUGAAUCCCAUGGAG 17 3455
    BCL11A-2971 GUGGUCCGGGCCCGGGC 17 3456
    BCL11A-2972 CUUCACACACCCCCAUU 17 3457
    BCL11A-2973 GUCCAAAAAGCUGCUGC 17 3458
    BCL11A-2974 CGGCACCAGCGACUUGG 17 3459
    BCL11A-2975 GCUUCUCCACACCGCCC 17 3460
    BCL11A-2976 + CGCCCGUGUGGCUGCGC 17 3461
    BCL11A-2977 CACGCACAGAACACUCA 17 3462
    BCL11A-2978 + UGUACAUGUGUAGCUGC 17 3463
    BCL11A-2979 CACCGGCGCAGCCACAC 17 3464
    BCL11A-2980 + UUGCUACCUGGCUGGAA 17 3465
    BCL11A-2981 + ACCCUGUCAAAGGCACU 17 3466
    BCL11A-2982 CCACCUGGCCGAGGCCG 17 3467
    BCL11A-2983 + GGGCGGAUUGCAGAGGA 17 3468
    BCL11A-2984 + CUAGAGAAAUCCAUGGC 17 3469
    BCL11A-2985 GGCGGAAGAGAUGGCCC 17 3470
    BCL11A-2986 + GGGGCGGAUUGCAGAGG 17 3471
    BCL11A-2987 GUGUGGCAGUUUUCGGA 17 3472
    BCL11A-2988 GAGAGAGGCUUCCGGCC 17 3473
    BCL11A-2989 + CGGGUGAUGGGUGGCCA 17 3474
    BCL11A-2990 CCCGGGGAGCUGGACGG 17 3475
    BCL11A-2991 UAGGAGACUUAGAGAGC 17 3476
    BCL11A-2992 + CACAUCUUGAGCUCUCU 17 3477
    BCL11A-2993 + CCUCGGCCUCGGCCAGG 17 3478
    BCL11A-2994 GGCCUUCCACCAGGUCC 17 3479
    BCL11A-2995 + UCUCGCCCAGGACCUGG 17 3480
    BCL11A-2996 + UCUGCCCUCUUUUGAGC 17 3481
    BCL11A-2997 + ACUAAACAGGGGGGGAG 17 3482
    BCL11A-2998 + CUUGACCGGGGGCUGGG 17 3483
    BCL11A-2999 + UUGACCGGGGGCUGGGA 17 3484
    BCL11A-3000 AGACUUAGAGAGCUGGC 17 3485
    BCL11A-3001 AGCCCACCGCUGUCCCC 17 3486
    BCL11A-3002 AGCCAUUCACCAGUGCA 17 3487
    BCL11A-3003 GCUUCCGGCCUGGCAGA 17 3488
    BCL11A-3004 GACUUAGAGAGCUGGCA 17 3489
    BCL11A-3005 AGGCCCAGCUCAAAAGA 17 3490
    BCL11A-3006 + UCGGGUGAUGGGUGGCC 17 3491
    BCL11A-3007 + CAAGAGAAACCAUGCAC 17 3492
    BCL11A-3008 + AUCUUUGAGCUGCCUGG 17 3493
    BCL11A-3009 + UAUUCUUAGCAGGUUAA 17 3494
    BCL11A-3010 + CUGCCCUCUUUUGAGCU 17 3495
    BCL11A-3011 + CCAUCUCUUCCGCCCCC 17 3496
    BCL11A-3012 UGGCCGCGGCUGCUCCC 17 3497
    BCL11A-3013 + CCUGUGGCCCUCGGCCU 17 3498
    BCL11A-3014 + CAGCUCCCCGGGCGGUG 17 3499
    BCL11A-3015 + UUUGCAUAGGGCUGGGC 17 3500
    BCL11A-3016 + GGCCCUCGGCCUCGGCC 17 3501
    BCL11A-3017 GCUGACGGAGAGCGAGA 17 3502
    BCL11A-3018 AGAUGUGUGGCAGUUUU 17 3503
    BCL11A-3019 + AUUCUUAGCAGGUUAAA 17 3504
    BCL11A-3020 + UCUCCUAGAGAAAUCCA 17 3505
    BCL11A-3021 CCUUUGACAGGGUGCUG 17 3506
    BCL11A-3022 + GGAGGGGCGGAUUGCAG 17 3507
    BCL11A-3023 + UUCUUAGCAGGUUAAAG 17 3508
    BCL11A-3024 + CGGAUUGCAGAGGAGGG 17 3509
    BCL11A-3025 + UUUGAGCUGGGCCUGCC 17 3510
    BCL11A-3026 + CUUCAGCUUGCUGGCCU 17 3511
    BCL11A-3027 + CUUGAACUUGGCCACCA 17 3512
    BCL11A-3028 CUGCAACCAUUCCAGCC 17 3513
    BCL11A-3029 CAUAGAGCGCCUGGGGG 17 3514
    BCL11A-3030 GGGCGCGGUCGUGGGCG 17 3515
    BCL11A-3031 + UCCCAUGGAGAGGUGGC 17 3516
    BCL11A-3032 GGCCGCGGCUGCUCCCC 17 3517
    BCL11A-3033 AUUUCAGAGCAACCUGG 17 3518
    BCL11A-3034 GCCUUCCACCAGGUCCU 17 3519
    BCL11A-3035 + UGAAUCCCAUGGAGAGG 17 3520
    BCL11A-3036 + UUGAGCUGGGCCUGCCC 17 3521
    BCL11A-3037 + AGGGGCUCAGCGAGCUG 17 3522
    BCL11A-3038 + AGGGCUUCUCGCCCGUG 17 3523
    BCL11A-3039 CACCGCUGUCCCCAGGC 17 3524
    BCL11A-3040 CAAAUUUCAGAGCAACC 17 3525
    BCL11A-3041 AGAGAGCUCAAGAUGUG 17 3526
    BCL11A-3042 + AACCAUGCACUGGUGAA 17 3527
    BCL11A-3043 + CCUCCGUCCAGCUCCCC 17 3528
    BCL11A-3044 + AGUGUCCCUGUGGCCCU 17 3529
    BCL11A-3045 + CCCUCCGUCCAGCUCCC 17 3530
    BCL11A-3046 + GGCCUGGGGACAGCGGU 17 3531
    BCL11A-3047 + GCCCAGCAGCAGCUUUU 17 3532
    BCL11A-3048 CAGGCCCAGCUCAAAAG 17 3533
    BCL11A-3049 CUUCGGGCUGAGCCUGG 17 3534
    BCL11A-3050 + CCCAUGGAGAGGUGGCU 17 3535
    BCL11A-3051 CCCAGCCACCUCUCCAU 17 3536
    BCL11A-3052 + GGGUUCCGGGGAGCUGG 17 3537
    BCL11A-3053 + UAGGGCUGGGCCGGCCU 17 3538
    BCL11A-3054 CCUGGGGGCGGAAGAGA 17 3539
    BCL11A-3055 + GCCCAGGACCUGGUGGA 17 3540
    BCL11A-3056 CGGGCUGAGCCUGGAGG 17 3541
    BCL11A-3057 ACCACGAGAACAGCUCG 17 3542
    BCL11A-3058 + CGGCCUGGGGACAGCGG 17 3543
    BCL11A-3059 UCCAAAAAGCUGCUGCU 17 3544
    BCL11A-3060 + GCGCCCUUCUGCCAGGC 17 3545
    BCL11A-3061 UCCCAGCCACCUCUCCA 17 3546
    BCL11A-3062 CUCCACCGCCAGCUCCC 17 3547
    BCL11A-3063 + CUGGGCCUGCCCGGGCC 17 3548
    BCL11A-3064 + AGGGCUGGGCCGGCCUG 17 3549
    BCL11A-3065 + AACAGGGGGGGAGUGGG 17 3550
    BCL11A-3066 GGAGAACGGGGACGAGG 17 3551
    BCL11A-3067 + UGAUGCGCUUAGAGAAG 17 3552
    BCL11A-3068 + GGAUUGCAGAGGAGGGA 17 3553
    BCL11A-3069 + GGCCGGCCUGGGGACAG 17 3554
    BCL11A-3070 + GAUUGCAGAGGAGGGAG 17 3555
    BCL11A-3071 + AUUGCAGAGGAGGGAGG 17 3556
    BCL11A-3072 + ACCGGGGGCUGGGAGGG 17 3557
    BCL11A-3073 + UGGAGAGGUGGCUGGGA 17 3558
    BCL11A-3074 + UUGCAGAGGAGGGAGGG 17 3559
    BCL11A-3075 CGGGGACGAGGAGGAAG 17 3560
    BCL11A-3076 GACGGAGAGCGAGAGGG 17 3561
    BCL11A-3077 UCCUCCCUCCCAGCCCC 17 3562
    BCL11A-3078 + GCUUCAGCUUGCUGGCC 17 3563
    BCL11A-3079 + UGCAGAGGAGGGAGGGG 17 3564
    BCL11A-3080 + GGGCUGGGAGGGAGGAG 17 3565
    BCL11A-3081 GGAAGAGGAGGACGACG 17 3566
    BCL11A-3082 + GGGGCUGGGAGGGAGGA 17 3567
    BCL11A-3083 GGAGGACGACGAGGAAG 17 3568
    BCL11A-3084 GGAGGAGGAGGAGCUGA 17 3569
    BCL11A-3085 + GGGGGCUGGGAGGGAGG 17 3570
    BCL11A-3086 + CUGGGAGGGAGGAGGGG 17 3571
    BCL11A-3087 CGAGGAAGAGGAAGAAG 17 3572
    BCL11A-3088 GGACGAGGAGGAAGAGG 17 3573
    BCL11A-3089 GGAAGAAGAGGAGGAAG 17 3574
    BCL11A-3090 GGAAGAGGAAGAAGAGG 17 3575
    BCL11A-3091 AGAAGAGGAGGAAGAGG 17 3576
    BCL11A-3092 AGAGGAGGAAGAGGAGG 17 3577
    BCL11A-3093 GGAGGAAGAGGAGGAGG 17 3578
    BCL11A-3094 + GUCUAUGCGGUCCGACUCGC 20 3579
    BCL11A-3095 + UCGUCGGACUUGACCGUCAU 20 3580
    BCL11A-3096 + CGUCGGACUUGACCGUCAUG 20 3581
    BCL11A-3097 AUGACGGUCAAGUCCGACGA 20 3582
    BCL11A-3098 GAGUCGGACCGCAUAGACGA 20 3583
    BCL11A-3099 + CGGGCCCGGACCACUAAUAU 20 3584
    BCL11A-3100 + GUCGUCGGACUUGACCGUCA 20 3585
    BCL11A-3101 + CUCUGGGUACUACGCCGAAU 20 3586
    BCL11A-3102 + CUGGGUACUACGCCGAAUGG 20 3587
    BCL11A-3103 + CCGGGCCCGGACCACUAAUA 20 3588
    BCL11A-3104 CCGCGGGUUGGUAUCCCUUC 20 3589
    BCL11A-3105 + UCUGGGUACUACGCCGAAUG 20 3590
    BCL11A-3106 + GGAUACCAACCCGCGGGGUC 20 3591
    BCL11A-3107 ACGCCCCAUAUUAGUGGUCC 20 3592
    BCL11A-3108 CACUUGCGACGAAGACUCGG 20 3593
    BCL11A-3109 + UCUCUGGGUACUACGCCGAA 20 3594
    BCL11A-3110 UAAGCGCAUCAAGCUCGAGA 20 3595
    BCL11A-3111 UGCGACGAAGACUCGGUGGC 20 3596
    BCL11A-3112 + CGCGCUUAUGCUUCUCGCCC 20 3597
    BCL11A-3113 + UGAAGGGAUACCAACCCGCG 20 3598
    BCL11A-3114 + GGGCCCGGACCACUAAUAUG 20 3599
    BCL11A-3115 + CGUGUUGGGCAUCGCGGCCG 20 3600
    BCL11A-3116 + UCCGUGUUGGGCAUCGCGGC 20 3601
    BCL11A-3117 + GUCGGACUUGACCGUCAUGG 20 3602
    BCL11A-3118 + GCGCAAACUCCCGUUCUCCG 20 3603
    BCL11A-3119 + CUCCGAGGAGUGCUCCGACG 20 3604
    BCL11A-3120 + CACGGACUUGAGCGCGCUGC 20 3605
    BCL11A-3121 CACGCCCCAUAUUAGUGGUC 20 3606
    BCL11A-3122 + GAUACCAACCCGCGGGGUCA 20 3607
    BCL11A-3123 CAGCGCGCUCAAGUCCGUGG 20 3608
    BCL11A-3124 + GGGUGCACGCGUGGUCGCAC 20 3609
    BCL11A-3125 GAAGCAUAAGCGCGGCCACC 20 3610
    BCL11A-3126 GUGCGACCACGCGUGCACCC 20 3611
    BCL11A-3127 + GAGUACACGUUCUCCGUGUU 20 3612
    BCL11A-3128 + GUCUCGGUGGUGGACUAAAC 20 3613
    BCL11A-3129 + CCGUUCUCCGGGAUCAGGUU 20 3614
    BCL11A-3130 + CGAGUACACGUUCUCCGUGU 20 3615
    BCL11A-3131 CGGAGAACGUGUACUCGCAG 20 3616
    BCL11A-3132 GGGAGCACGCCCCAUAUUAG 20 3617
    BCL11A-3133 CCAUAUUAGUGGUCCGGGCC 20 3618
    BCL11A-3134 + GCCGCAGAACUCGCAUGACU 20 3619
    BCL11A-3135 + CGCCCCGCGAGCUGUUCUCG 20 3620
    BCL11A-3136 GCAGUGGCUCGCCGGCUACG 20 3621
    BCL11A-3137 CAUAUUAGUGGUCCGGGCCC 20 3622
    BCL11A-3138 + CUGAAGGGAUACCAACCCGC 20 3623
    BCL11A-3139 + AUACCAACCCGCGGGGUCAG 20 3624
    BCL11A-3140 CAGCAGCGCGCUCAAGUCCG 20 3625
    BCL11A-3141 + CGUCCCCGUUCUCCGGGAUC 20 3626
    BCL11A-3142 CACCACGAGAACAGCUCGCG 20 3627
    BCL11A-3143 GCGGUUGAAUCCAAUGGCUA 20 3628
    BCL11A-3144 GGACACUUGCGACGAAGACU 20 3629
    BCL11A-3145 + GUGUUGGGCAUCGCGGCCGG 20 3630
    BCL11A-3146 + CUUCGUCGCAAGUGUCCCUG 20 3631
    BCL11A-3147 + CCCCAGGCGCUCUAUGCGGU 20 3632
    BCL11A-3148 + CCGUGUUGGGCAUCGCGGCC 20 3633
    BCL11A-3149 + CGUUCUCCGGGAUCAGGUUG 20 3634
    BCL11A-3150 + GCCUCUCUCGAUACUGAUCC 20 3635
    BCL11A-3151 + UCGCAUGACUUGGACUUGAC 20 3636
    BCL11A-3152 AUCACCCGAGUGCCUUUGAC 20 3637
    BCL11A-3153 UAAGCGCGGCCACCUGGCCG 20 3638
    BCL11A-3154 GCACAAAUCGUCCCCCAUGA 20 3639
    BCL11A-3155 CGCCCUGCCCGACGUCAUGC 20 3640
    BCL11A-3156 CAACCUGAUCCCGGAGAACG 20 3641
    BCL11A-3157 CGGAGCACUCCUCGGAGAAC 20 3642
    BCL11A-3158 AGACUCGGUGGCCGGCGAGU 20 3643
    BCL11A-3159 + GGCGGUGGAGAGACCGUCGU 20 3644
    BCL11A-3160 GUGUACUCGCAGUGGCUCGC 20 3645
    BCL11A-3161 UCGGAGCACUCCUCGGAGAA 20 3646
    BCL11A-3162 CCCGGCCGCGAUGCCCAACA 20 3647
    BCL11A-3163 + CCCGUUCUCCGGGAUCAGGU 20 3648
    BCL11A-3164 + UCGGUGGUGGACUAAACAGG 20 3649
    BCL11A-3165 + CCUGAAGGGAUACCAACCCG 20 3650
    BCL11A-3166 + GUCGUUCUCGCUCUUGAACU 20 3651
    BCL11A-3167 CCCCACCGCAUAGAGCGCCU 20 3652
    BCL11A-3168 + GUCGCUGGUGCCGGGUUCCG 20 3653
    BCL11A-3169 CGAGAACAGCUCGCGGGGCG 20 3654
    BCL11A-3170 + CGCAUGACUUGGACUUGACC 20 3655
    BCL11A-3171 CCCACCGCAUAGAGCGCCUG 20 3656
    BCL11A-3172 + AAGUCGCUGGUGCCGGGUUC 20 3657
    BCL11A-3173 + CGAGGAGUGCUCCGACGAGG 20 3658
    BCL11A-3174 UCCCCGGGCGAGUCGGCCUC 20 3659
    BCL11A-3175 CUCCCCGGGCGAGUCGGCCU 20 3660
    BCL11A-3176 + CAUGACUUGGACUUGACCGG 20 3661
    BCL11A-3177 AGCUCGCGGGGCGCGGUCGU 20 3662
    BCL11A-3178 + UGCUCCGACGAGGAGGCAAA 20 3663
    BCL11A-3179 + CUUUUUGGACAGGCCCCCCG 20 3664
    BCL11A-3180 CUACGGCUUCGGGCUGAGCC 20 3665
    BCL11A-3181 CCCCGGGCGAGUCGGCCUCG 20 3666
    BCL11A-3182 + UAACAGUGCCAUCGUCUAUG 20 3667
    BCL11A-3183 CUCCUCGUCGGAGCACUCCU 20 3668
    BCL11A-3184 CCCGGCACCAGCGACUUGGU 20 3669
    BCL11A-3185 GCGCUUCUCCACACCGCCCG 20 3670
    BCL11A-3186 + CUCGGUGGUGGACUAAACAG 20 3671
    BCL11A-3187 CCCCCACCGCAUAGAGCGCC 20 3672
    BCL11A-3188 GAUCCCGGAGAACGGGGACG 20 3673
    BCL11A-3189 + CCAGGCGCUCUAUGCGGUGG 20 3674
    BCL11A-3190 UUAGUGGUCCGGGCCCGGGC 20 3675
    BCL11A-3191 + CCCAGGCGCUCUAUGCGGUG 20 3676
    BCL11A-3192 CGGCUGCUCCCCGGGCGAGU 20 3677
    BCL11A-3193 UCGCCGGCUACGCGGCCUCC 20 3678
    BCL11A-3194 AUCGAGAGAGGCUUCCGGCC 20 3679
    BCL11A-3195 + GGGUCCAAGUGAUGUCUCGG 20 3680
    BCL11A-3196 AUCGCCUUUUGCCUCCUCGU 20 3681
    BCL11A-3197 AUCUCGGGGCGCAGCGGCAC 20 3682
    BCL11A-3198 + CGGUGGUGGACUAAACAGGG 20 3683
    BCL11A-3199 GAUGGCACUGUUAAUGGCCG 20 3684
    BCL11A-3200 + UGCCCUGCAUGACGUCGGGC 20 3685
    BCL11A-3201 + UCUCGGUGGUGGACUAAACA 20 3686
    BCL11A-3202 AGAGGGUGGACUACGGCUUC 20 3687
    BCL11A-3203 + CCCCGAGGCCGACUCGCCCG 20 3688
    BCL11A-3204 GAUCUCGGGGCGCAGCGGCA 20 3689
    BCL11A-3205 ACGGAAGUCCCCUGACCCCG 20 3690
    BCL11A-3206 + ACUCGCCCGGGGAGCAGCCG 20 3691
    BCL11A-3207 UUGCGCUUCUCCACACCGCC 20 3692
    BCL11A-3208 GGAACCCGGCACCAGCGACU 20 3693
    BCL11A-3209 + GCAUGACUUGGACUUGACCG 20 3694
    BCL11A-3210 UAAUGGCCGCGGCUGCUCCC 20 3695
    BCL11A-3211 CCGGGCGAGUCGGCCUCGGG 20 3696
    BCL11A-3212 + GUCAAAGGCACUCGGGUGAU 20 3697
    BCL11A-3213 GGUGCUGCGGUUGAAUCCAA 20 3698
    BCL11A-3214 CUGGGCGAGAAGCAUAAGCG 20 3699
    BCL11A-3215 + ACUUGGACUUGACCGGGGGC 20 3700
    BCL11A-3216 + CCCCCCGAGGCCGACUCGCC 20 3701
    BCL11A-3217 CCACCGCAUAGAGCGCCUGG 20 3702
    BCL11A-3218 + AGUCGCUGGUGCCGGGUUCC 20 3703
    BCL11A-3219 + UCGCACAGGUUGCACUUGUA 20 3704
    BCL11A-3220 + GCCCUGCAUGACGUCGGGCA 20 3705
    BCL11A-3221 + CCGCCCCCAGGCGCUCUAUG 20 3706
    BCL11A-3222 GCCCUGCCCGACGUCAUGCA 20 3707
    BCL11A-3223 + GUCGCACAGGUUGCACUUGU 20 3708
    BCL11A-3224 AGGUAGCAAGCCGCCCUUCC 20 3709
    BCL11A-3225 CCAACCUGAUCCCGGAGAAC 20 3710
    BCL11A-3226 + AGGAAGGGCGGCUUGCUACC 20 3711
    BCL11A-3227 GAAGGAGUUCGACCUGCCCC 20 3712
    BCL11A-3228 + CUUGGACUUGACCGGGGGCU 20 3713
    BCL11A-3229 GAGAGGGUGGACUACGGCUU 20 3714
    BCL11A-3230 UCCAAGUCAUGCGAGUUCUG 20 3715
    BCL11A-3231 ACCCGGCACCAGCGACUUGG 20 3716
    BCL11A-3232 + CCCCCAGGCGCUCUAUGCGG 20 3717
    BCL11A-3233 + GCGUCUGCCCUCUUUUGAGC 20 3718
    BCL11A-3234 GCCCGACGUCAUGCAGGGCA 20 3719
    BCL11A-3235 + GAGCUUGAUGCGCUUAGAGA 20 3720
    BCL11A-3236 CAGCUCGCGGGGCGCGGUCG 20 3721
    BCL11A-3237 + CGUGGUGGCGCGCCGCCUCC 20 3722
    BCL11A-3238 UCACCCGAGUGCCUUUGACA 20 3723
    BCL11A-3239 GAACGACCCCAACCUGAUCC 20 3724
    BCL11A-3240 + CAACCGCAGCACCCUGUCAA 20 3725
    BCL11A-3241 + UCCAAGUGAUGUCUCGGUGG 20 3726
    BCL11A-3242 + GUUCUCCGUGUUGGGCAUCG 20 3727
    BCL11A-3243 CGGAAGUCCCCUGACCCCGC 20 3728
    BCL11A-3244 + UAUGCUUCUCGCCCAGGACC 20 3729
    BCL11A-3245 AGCUGGACGGAGGGAUCUCG 20 3730
    BCL11A-3246 + GGCUGCGCCGGUGCACCACC 20 3731
    BCL11A-3247 GUUGGUAUCCCUUCAGGACU 20 3732
    BCL11A-3248 AUAGACGAUGGCACUGUUAA 20 3733
    BCL11A-3249 CUCCCGCCAUGGAUUUCUCU 20 3734
    BCL11A-3250 ACCAGGAUCAGUAUCGAGAG 20 3735
    BCL11A-3251 AGUCCCCUGACCCCGCGGGU 20 3736
    BCL11A-3252 + GUCUGGAGUCUCCGAAGCUA 20 3737
    BCL11A-3253 GCCGGCCCAGCCCUAUGCAA 20 3738
    BCL11A-3254 GAUGUGUGGCAGUUUUCGGA 20 3739
    BCL11A-3255 + CUAGAGAAAUCCAUGGCGGG 20 3740
    BCL11A-3256 + GGCGCUGCCCACCAAGUCGC 20 3741
    BCL11A-3257 CCCGGGCGAGUCGGCCUCGG 20 3742
    BCL11A-3258 ACACCGCCCGGGGAGCUGGA 20 3743
    BCL11A-3259 + CAGUAACCUUUGCAUAGGGC 20 3744
    BCL11A-3260 UCAGUAUCGAGAGAGGCUUC 20 3745
    BCL11A-3261 + GCAUGACGUCGGGCAGGGCG 20 3746
    BCL11A-3262 CCGCAUAGAGCGCCUGGGGG 20 3747
    BCL11A-3263 + CCCCCGAGGCCGACUCGCCC 20 3748
    BCL11A-3264 + AGGGCGGCUUGCUACCUGGC 20 3749
    BCL11A-3265 + GCACCCUGUCAAAGGCACUC 20 3750
    BCL11A-3266 + CUGAUCCUGGUAUUCUUAGC 20 3751
    BCL11A-3267 + CAUGUGGCGCUUCAGCUUGC 20 3752
    BCL11A-3268 + CCCACCAAGUCGCUGGUGCC 20 3753
    BCL11A-3269 + GGAGGCAAAAGGCGAUUGUC 20 3754
    BCL11A-3270 CCCAACCUGAUCCCGGAGAA 20 3755
    BCL11A-3271 + GAGUCUCCGAAGCUAAGGAA 20 3756
    BCL11A-3272 GGCUAUGGAGCCUCCCGCCA 20 3757
    BCL11A-3273 + CGUCUGCCCUCUUUUGAGCU 20 3758
    BCL11A-3274 CGCCCGGGGAGCUGGACGGA 20 3759
    BCL11A-3275 + AGUAACCUUUGCAUAGGGCU 20 3760
    BCL11A-3276 UCCACCACCGAGACAUCACU 20 3761
    BCL11A-3277 + GGUUGCAGUAACCUUUGCAU 20 3762
    BCL11A-3278 + GCAAUAUGAAUCCCAUGGAG 20 3763
    BCL11A-3279 + ACCAUGCCCUGCAUGACGUC 20 3764
    BCL11A-3280 + GGCCUCGCUGAAGUGCUGCA 20 3765
    BCL11A-3281 AGAGCAACCUGGUGGUGCAC 20 3766
    BCL11A-3282 + GCCCACCAAGUCGCUGGUGC 20 3767
    BCL11A-3283 + UGUCAAAGGCACUCGGGUGA 20 3768
    BCL11A-3284 + AGCUUGAUGCGCUUAGAGAA 20 3769
    BCL11A-3285 + AGGGGGGGCGUCGCCAGGAA 20 3770
    BCL11A-3286 + GUGGAAAGCGCCCUUCUGCC 20 3771
    BCL11A-3287 + UGGGGGUCCAAGUGAUGUCU 20 3772
    BCL11A-3288 CUCCAUGCAGCACUUCAGCG 20 3773
    BCL11A-3289 + GCGCUUCAGCUUGCUGGCCU 20 3774
    BCL11A-3290 CUUCAGCGAGGCCUUCCACC 20 3775
    BCL11A-3291 + GGAGUCUCCGAAGCUAAGGA 20 3776
    BCL11A-3292 + CACUCGGGUGAUGGGUGGCC 20 3777
    BCL11A-3293 UGCGCUUCUCCACACCGCCC 20 3778
    BCL11A-3294 + GGUGGUGGACUAAACAGGGG 20 3779
    BCL11A-3295 CGAGGCCUUCCACCAGGUCC 20 3780
    BCL11A-3296 AAUGGCCGCGGCUGCUCCCC 20 3781
    BCL11A-3297 + GUUGUACAUGUGUAGCUGCU 20 3782
    BCL11A-3298 GUUCUUCACACACCCCCAUU 20 3783
    BCL11A-3299 CGCAGCGGCACGGGAAGUGG 20 3784
    BCL11A-3300 + GCGGGAGGCUCCAUAGCCAU 20 3785
    BCL11A-3301 GGUGCACCGGCGCAGCCACA 20 3786
    BCL11A-3302 CUCCACACCGCCCGGGGAGC 20 3787
    BCL11A-3303 + AAAGCGCCCUUCUGCCAGGC 20 3788
    BCL11A-3304 + ACUCGGGUGAUGGGUGGCCA 20 3789
    BCL11A-3305 + CUGCCUGGAGGCCGCGUAGC 20 3790
    BCL11A-3306 + GUCCAGCUCCCCGGGCGGUG 20 3791
    BCL11A-3307 GAGCUGGACGGAGGGAUCUC 20 3792
    BCL11A-3308 UCUAGCCCACCGCUGUCCCC 20 3793
    BCL11A-3309 + AGUUGUACAUGUGUAGCUGC 20 3794
    BCL11A-3310 + AUUCUGCACCUAGUCCUGAA 20 3795
    BCL11A-3311 CCACCACGAGAACAGCUCGC 20 3796
    BCL11A-3312 + CUCCUAGAGAAAUCCAUGGC 20 3797
    BCL11A-3313 UUUAACCUGCUAAGAAUACC 20 3798
    BCL11A-3314 + GGACUAAACAGGGGGGGAGU 20 3799
    BCL11A-3315 GGCCACCUGGCCGAGGCCGA 20 3800
    BCL11A-3316 + GGCUUGCUACCUGGCUGGAA 20 3801
    BCL11A-3317 + CAUUCUGCACCUAGUCCUGA 20 3802
    BCL11A-3318 + UGCUGGCCUGGGUGCACGCG 20 3803
    BCL11A-3319 + UGUGGCCCUCGGCCUCGGCC 20 3804
    BCL11A-3320 CCGCCCGGGGAGCUGGACGG 20 3805
    BCL11A-3321 UGGCCGAGGCCGAGGGCCAC 20 3806
    BCL11A-3322 + UGGGCAUCGCGGCCGGGGGC 20 3807
    BCL11A-3323 + UCUCCUAGAGAAAUCCAUGG 20 3808
    BCL11A-3324 + GGGCCAUCUCUUCCGCCCCC 20 3809
    BCL11A-3325 + GUUGCAGUAACCUUUGCAUA 20 3810
    BCL11A-3326 + AAAGGCACUCGGGUGAUGGG 20 3811
    BCL11A-3327 + GAAGGGAUCUUUGAGCUGCC 20 3812
    BCL11A-3328 + GCCACACAUCUUGAGCUCUC 20 3813
    BCL11A-3329 GGAGGGAUCUCGGGGCGCAG 20 3814
    BCL11A-3330 CCCGGAGAACGGGGACGAGG 20 3815
    BCL11A-3331 + UGCAUAGGGCUGGGCCGGCC 20 3816
    BCL11A-3332 CGGGGCGCGGUCGUGGGCGU 20 3817
    BCL11A-3333 + GAGGGGGGGCGUCGCCAGGA 20 3818
    BCL11A-3334 ACCGCCAGCUCCCCGGAACC 20 3819
    BCL11A-3335 + GGUAUUCUUAGCAGGUUAAA 20 3820
    BCL11A-3336 AGGCUUCCGGCCUGGCAGAA 20 3821
    BCL11A-3337 + GAUCCCUCCGUCCAGCUCCC 20 3822
    BCL11A-3338 + UGGUAUUCUUAGCAGGUUAA 20 3823
    BCL11A-3339 AUCUACUUAGAAAGCGAACA 20 3824
    BCL11A-3340 CGGCCACCUGGCCGAGGCCG 20 3825
    BCL11A-3341 CAACACGCACAGAACACUCA 20 3826
    BCL11A-3342 + GCCGGCCUGGGGACAGCGGU 20 3827
    BCL11A-3343 GCCACCACGAGAACAGCUCG 20 3828
    BCL11A-3344 + GUAUUCUUAGCAGGUUAAAG 20 3829
    BCL11A-3345 CUCUAGGAGACUUAGAGAGC 20 3830
    BCL11A-3346 AACAGCCAUUCACCAGUGCA 20 3831
    BCL11A-3347 + UUGCAAGAGAAACCAUGCAC 20 3832
    BCL11A-3348 + GACUUGACCGGGGGCUGGGA 20 3833
    BCL11A-3349 + ACCUUUGCAUAGGGCUGGGC 20 3834
    BCL11A-3350 + UCUUUUGAGCUGGGCCUGCC 20 3835
    BCL11A-3351 GAGGCCUUCCACCAGGUCCU 20 3836
    BCL11A-3352 + CUUUUGAGCUGGGCCUGCCC 20 3837
    BCL11A-3353 + GGGAUCUUUGAGCUGCCUGG 20 3838
    BCL11A-3354 GGGCAGGCCCAGCUCAAAAG 20 3839
    BCL11A-3355 + AGCACCCUGUCAAAGGCACU 20 3840
    BCL11A-3356 + UGGACUAAACAGGGGGGGAG 20 3841
    BCL11A-3357 + GCUCUUGAACUUGGCCACCA 20 3842
    BCL11A-3358 + GAAUCCCAUGGAGAGGUGGC 20 3843
    BCL11A-3359 GUGCACCGGCGCAGCCACAC 20 3844
    BCL11A-3360 AAAGAUCCCUUCCUUAGCUU 20 3845
    BCL11A-3361 + UGUCUGCAAUAUGAAUCCCA 20 3846
    BCL11A-3362 GGCAGGCCCAGCUCAAAAGA 20 3847
    BCL11A-3363 + CCUCCGUCCAGCUCCCCGGG 20 3848
    BCL11A-3364 CUGUCCAAAAAGCUGCUGCU 20 3849
    BCL11A-3365 + GCUUGAUGCGCUUAGAGAAG 20 3850
    BCL11A-3366 CGGCUUCGGGCUGAGCCUGG 20 3851
    BCL11A-3367 + CACCAUGCCCUGCAUGACGU 20 3852
    BCL11A-3368 UCAAGAUGUGUGGCAGUUUU 20 3853
    BCL11A-3369 GUUCAAAUUUCAGAGCAACC 20 3854
    BCL11A-3370 + GAGAAGGGGCUCAGCGAGCU 20 3855
    BCL11A-3371 GCAGCGGCACGGGAAGUGGA 20 3856
    BCL11A-3372 + AAGUCUCCUAGAGAAAUCCA 20 3857
    BCL11A-3373 + GGUGCCGGGUUCCGGGGAGC 20 3858
    BCL11A-3374 CCUGUCCAAAAAGCUGCUGC 20 3859
    BCL11A-3375 + AUAUGAAUCCCAUGGAGAGG 20 3860
    BCL11A-3376 GGGCGCAGCGGCACGGGAAG 20 3861
    BCL11A-3377 GGCCGAGGCCGAGGGCCACA 20 3862
    BCL11A-3378 + GCAAGUGUCCCUGUGGCCCU 20 3863
    BCL11A-3379 + GGACUUGACCGGGGGCUGGG 20 3864
    BCL11A-3380 + GCUUCUCGCCCAGGACCUGG 20 3865
    BCL11A-3381 GCGCCUGGGGGCGGAAGAGA 20 3866
    BCL11A-3382 + GUCCCUGUGGCCCUCGGCCU 20 3867
    BCL11A-3383 + AUCCCUCCGUCCAGCUCCCC 20 3868
    BCL11A-3384 GUGCCUUUGACAGGGUGCUG 20 3869
    BCL11A-3385 CCCAGAGAGCUCAAGAUGUG 20 3870
    BCL11A-3386 + GGCCCUCGGCCUCGGCCAGG 20 3871
    BCL11A-3387 GAGAGCGAGAGGGUGGACUA 20 3872
    BCL11A-3388 + GGGGGCGUCGCCAGGAAGGG 20 3873
    BCL11A-3389 + AGAGAAGGGGCUCAGCGAGC 20 3874
    BCL11A-3390 + CCACACAUCUUGAGCUCUCU 20 3875
    BCL11A-3391 + GCUGCCCAGCAGCAGCUUUU 20 3876
    BCL11A-3392 GGAGCUGGACGGAGGGAUCU 20 3877
    BCL11A-3393 GGGGGCGGAAGAGAUGGCCC 20 3878
    BCL11A-3394 AGGAGACUUAGAGAGCUGGC 20 3879
    BCL11A-3395 GAGGCUUCCGGCCUGGCAGA 20 3880
    BCL11A-3396 + AAUCCCAUGGAGAGGUGGCU 20 3881
    BCL11A-3397 + UGUGCAUGUGCGUCUUCAUG 20 3882
    BCL11A-3398 + CUCGCCCAGGACCUGGUGGA 20 3883
    BCL11A-3399 + UCCUCCUCGUCCCCGUUCUC 20 3884
    BCL11A-3400 + AGAAACCAUGCACUGGUGAA 20 3885
    BCL11A-3401 CUUCGGGCUGAGCCUGGAGG 20 3886
    BCL11A-3402 + GCCGGGUUCCGGGGAGCUGG 20 3887
    BCL11A-3403 + AGAAGGGGCUCAGCGAGCUG 20 3888
    BCL11A-3404 + CUAAACAGGGGGGGAGUGGG 20 3889
    BCL11A-3405 CAAAUUUCAGAGCAACCUGG 20 3890
    BCL11A-3406 + GAGGGAGGGGGGGCGUCGCC 20 3891
    BCL11A-3407 + CCUCCUCGUCCCCGUUCUCC 20 3892
    BCL11A-3408 + CCAGCAGCAGCUUUUUGGAC 20 3893
    BCL11A-3409 GCCCACCGCUGUCCCCAGGC 20 3894
    BCL11A-3410 GGAGACUUAGAGAGCUGGCA 20 3895
    BCL11A-3411 AGGAGCUGACGGAGAGCGAG 20 3896
    BCL11A-3412 + GAGGGGCGGAUUGCAGAGGA 20 3897
    BCL11A-3413 + CAUAGGGCUGGGCCGGCCUG 20 3898
    BCL11A-3414 + GGCGGAUUGCAGAGGAGGGA 20 3899
    BCL11A-3415 + GGAGGGGCGGAUUGCAGAGG 20 3900
    BCL11A-3416 UUACUGCAACCAUUCCAGCC 20 3901
    BCL11A-3417 + GCAUAGGGCUGGGCCGGCCU 20 3902
    BCL11A-3418 + GGGCGGAUUGCAGAGGAGGG 20 3903
    BCL11A-3419 + GGGUUCCGGGGAGCUGGCGG 20 3904
    BCL11A-3420 + UCUCGCCCGUGUGGCUGCGC 20 3905
    BCL11A-3421 CUUCCCAGCCACCUCUCCAU 20 3906
    BCL11A-3422 GCUGACGGAGAGCGAGAGGG 20 3907
    BCL11A-3423 + GCGGAUUGCAGAGGAGGGAG 20 3908
    BCL11A-3424 GGAGCUGACGGAGAGCGAGA 20 3909
    BCL11A-3425 UCUCUCCACCGCCAGCUCCC 20 3910
    BCL11A-3426 + UUGACCGGGGGCUGGGAGGG 20 3911
    BCL11A-3427 + CGGAUUGCAGAGGAGGGAGG 20 3912
    BCL11A-3428 GCGGGGCGCGGUCGUGGGCG 20 3913
    BCL11A-3429 + GAGCUGGGCCUGCCCGGGCC 20 3914
    BCL11A-3430 + CUGGGCCGGCCUGGGGACAG 20 3915
    BCL11A-3431 + UGUAGGGCUUCUCGCCCGUG 20 3916
    BCL11A-3432 + CCAUGGAGAGGUGGCUGGGA 20 3917
    BCL11A-3433 + GGAGGAGGGGCGGAUUGCAG 20 3918
    BCL11A-3434 CCUUCCCAGCCACCUCUCCA 20 3919
    BCL11A-3435 + CCCGCGAGCUGUUCUCGUGG 20 3920
    BCL11A-3436 + GAUUGCAGAGGAGGGAGGGG 20 3921
    BCL11A-3437 + GGCCGGCCUGGGGACAGCGG 20 3922
    BCL11A-3438 + GGAUUGCAGAGGAGGGAGGG 20 3923
    BCL11A-3439 + ACCGGGGGCUGGGAGGGAGG 20 3924
    BCL11A-3440 + CCGGGGGCUGGGAGGGAGGA 20 3925
    BCL11A-3441 GAACGGGGACGAGGAGGAAG 20 3926
    BCL11A-3442 CCCUCCUCCCUCCCAGCCCC 20 3927
    BCL11A-3443 + CGGGGGCUGGGAGGGAGGAG 20 3928
    BCL11A-3444 + GGCGCUUCAGCUUGCUGGCC 20 3929
    BCL11A-3445 CGGGGACGAGGAGGAAGAGG 20 3930
    BCL11A-3446 AGAGGAGGAGGAGGAGCUGA 20 3931
    BCL11A-3447 + GGGCUGGGAGGGAGGAGGGG 20 3932
    BCL11A-3448 AGAGGAGGACGACGAGGAAG 20 3933
    BCL11A-3449 CGACGAGGAAGAGGAAGAAG 20 3934
    BCL11A-3450 GGAGGAAGAGGAGGACGACG 20 3935
    BCL11A-3451 CGAGGAAGAGGAAGAAGAGG 20 3936
    BCL11A-3452 GGAAGAAGAGGAGGAAGAGG 20 3937
    BCL11A-3453 AGAGGAAGAAGAGGAGGAAG 20 3938
    BCL11A-3454 AGAAGAGGAGGAAGAGGAGG 20 3939
    BCL11A-3455 AGAGGAGGAAGAGGAGGAGG 20 3940
  • Table 5A provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to first tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 5A
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-3456 GAACCAGACCACGGCCCGUU 20 3941
    BCL11A-3457 + GACCUGGAUGCCAACCUCCA 20 3942
    BCL11A-3458 + GAUUAGAGCUCCAUGUG 17 3943
    BCL11A-3459 GAUUGUUUAUCAACGUCAUC 20 3944
    BCL11A-3460 + GCACUCAUCCCAGGCGU 17 3945
    BCL11A-3461 + GGGGAUUAGAGCUCCAUGUG 20 3946
    BCL11A-3462 GUGCAGAAUAUGCCCCG 17 3947
  • Table 5B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL43A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL3A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 5B
    2nd Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-3463 AACCAGACCACGGCCCG 17 3948
    BCL11A-3464 + AAUUCCCGUUUGCUUAAGUG 20 3949
    BCL11A-3465 ACCAGACCACGGCCCGU 17 3950
    BCL11A-3466 AUGAACCAGACCACGGCCCG 20 3951
    BCL11A-3467 + AUUCCCGUUUGCUUAAGUGC 20 3952
    BCL11A-3468 CCAGACCACGGCCCGUU 17 3953
    BCL11A-3469 + CCCGUUUGCUUAAGUGC 17 3954
    BCL11A-3470 + CCUGGAUGCCAACCUCC 17 3955
    BCL11A-3471 + CUGGAUGCCAACCUCCA 17 3956
    BCL11A-3472 + UCAUCCUCUGGCGUGAC 17 3957
    BCL11A-3473 + UCCCGUUUGCUUAAGUG 17 3958
    BCL11A-3474 + UCGUCAUCCUCUGGCGUGAC 20 3959
    BCL11A-3475 + UCUGCACUCAUCCCAGGCGU 20 3960
    BCL11A-3476 + UCUGGUUCAUCAUCUGU 17 3961
    BCL11A-3477 UGAACCAGACCACGGCCCGU 20 3962
    BCL11A-3478 + UGACCUGGAUGCCAACCUCC 20 3963
    BCL11A-3479 UGAGUGCAGAAUAUGCCCCG 20 3964
    BCL11A-3480 + UGCACUCAUCCCAGGCG 17 3965
    BCL11A-3481 + UGGUCUGGUUCAUCAUCUGU 20 3966
    BCL11A-3482 UGUUUAUCAACGUCAUC 17 3967
    BCL11A-3483 UGUUUAUCAACGUCAUCUAG 20 3968
    BCL11A-3484 UUAUCAACGUCAUCUAG 17 3969
    BCL11A-3485 + UUCUGCACUCAUCCCAGGCG 20 3970
    BCL11A-3486 UUGUUUAUCAACGUCAUCUA 20 3971
    BCL11A-3487 UUUAUCAACGUCAUCUA 17 3972
  • Table 5C provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to third tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 5C
    3rd Tier Target SEQ
    gRNA DNA Targeting Site  ID
    Name Strand Domain Length NO
    BCL11A-3488 GAAAAAAGCAUCCAAUCCCG 20 3973
    BCL11A-3489 + GAGAGGCCCCUCCAGUG 17 3974
    BCL11A-3490 + GAGCUCCAUGUGCAGAACGA 20 3975
    BCL11A-3491 GAGGAAUUUGCCCCAAA 17 3976
    BCL11A-3492 + GAGGAGAGGCCCCUCCAGUG 20 3977
    BCL11A-3493 + GAGGAGGUCAUGAUCCCCUU 20 3978
    BCL11A-3494 + GAGGUCAUGAUCCCCUU 17 3979
    BCL11A-3495 GCAUCCAGGUCACGCCA 17 3980
    BCL11A-3496 GCCACCUUCCCCUUCACCAA 20 3981
    BCL11A-3497 GCCAGAUGAACUUCCCA 17 3982
    BCL11A-3498 GCCAGAUGAACUUCCCAUUG 20 3983
    BCL11A-3499 GCCCGUUGGGAGCUCCAGAA 20 3984
    BCL11A-3500 GCCUCUGCUUAGAAAAAGCU 20 3985
    BCL11A-3501 + GCUCCAUGUGCAGAACG 17 3986
    BCL11A-3502 GCUCUAAUCCCCACGCC 17 3987
    BCL11A-3503 GGACAUUCUUAUUUUUA 17 3988
    BCL11A-3504 GGAGCUCUAAUCCCCACGCC 20 3989
    BCL11A-3505 GGAUCAUGACCUCCUCACCU 20 3990
    BCL11A-3506 + GGAUGCCAACCUCCACGGGA 20 3991
    BCL11A-3507 + GGCACUGCCCACAGGUG 17 3992
    BCL11A-3508 GGCCCGUUGGGAGCUCCAGA 20 3993
    BCL11A-3509 GGGGGACAUUCUUAUUUUUA 20 3994
    BCL11A-3510 GGUUGGCAUCCAGGUCACGC 20 3995
    BCL11A-3511 + GGUUUGCCUUGCUUGCG 17 3996
    BCL11A-3512 + GUGCAGAACGAGGGGAG 17 3997
    BCL11A-3513 GUGCCAGAUGAACUUCCCAU 20 3998
  • Table 5D provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to forth tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL4A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 5D
    Target SEQ
    4th Tier DNA Targeting Site ID
    gRNA Name Strand Domain Length NO
    BCL11A-3514 AAAAAGCAUCCAAUCCC 17 3999
    BCL11A-3515 + AAAAAUAAGAAUGUCCCCCA 20 4000
    BCL11A-3516 AAAAGCAUCCAAUCCCG 17 4001
    BCL11A-3517 + AAAAUAAGAAUGUCCCCCAA 20 4002
    BCL11A-3518 AAACCCCAGCACUUAAGCAA 20 4003
    BCL11A-3519 + AAAUAAGAAUGUCCCCCAAU 20 4004
    BCL11A-3520 AACCCCAGCACUUAAGCAAA 20 4005
    BCL11A-3521 + AAUAAGAAUGUCCCCCA 17 4006
    BCL11A-3522 ACCCCAGCACUUAAGCAAAC 20 4007
    BCL11A-3523 ACCUUCCCCUUCACCAA 17 4008
    BCL11A-3524 + AGAGCUCCAUGUGCAGA 17 4009
    BCL11A-3525 + AGAGCUCCAUGUGCAGAACG 20 4010
    BCL11A-3526 AGAUGAACUUCCCAUUG 17 4011
    BCL11A-3527 AGCCAUUCUUACAGAUG 17 4012
    BCL11A-3528 + AGCUCCAUGUGCAGAAC 17 4013
    BCL11A-3529 + AGCUCCAUGUGCAGAACGAG 20 4014
    BCL11A-3530 AGCUCUAAUCCCCACGC 17 4015
    BCL11A-3531 AGGAAUUUGCCCCAAAC 17 4016
    BCL11A-3532 + AGGAGGUCAUGAUCCCCUUC 20 4017
    BCL11A-3533 + AGGUCAUGAUCCCCUUC 17 4018
    BCL11A-3534 AGUGCCAGAUGAACUUCCCA 20 4019
    BCL11A-3535 + AUAAGAAUGUCCCCCAA 17 4020
    BCL11A-3536 + AUCCCAGGCGUGGGGAU 17 4021
    BCL11A-3537 + AUCCCCUUCUGGAGCUCCCA 20 4022
    BCL11A-3538 + AUCUGGCACUGCCCACAGGU 20 4023
    BCL11A-3539 AUGCAAUGGCAGCCUCUGCU 20 4024
    BCL11A-3540 + AUGUGCAGAACGAGGGG 17 4025
    BCL11A-3541 + AUUAGAGCUCCAUGUGCAGA 20 4026
    BCL11A-3542 + AUUCUGCACUCAUCCCAGGC 20 4027
    BCL11A-3543 AUUUUUAUCGAGCACAA 17 4028
    BCL11A-3544 CAAUGGCAGCCUCUGCU 17 4029
    BCL11A-3545 CACGCCUGGGAUGAGUG 17 4030
    BCL11A-3546 CAGAUGAACUUCCCAUU 17 4031
    BCL11A-3547 + CAUCUCGAUUGGUGAAG 17 4032
    BCL11A-3548 + CAUGUGCAGAACGAGGG 17 4033
    BCL11A-3549 + CAUGUGCAGAACGAGGGGAG 20 4034
    BCL11A-3550 + CCACAGCUUUUUCUAAG 17 4035
    BCL11A-3551 CCACGGCCCGUUGGGAGCUC 20 4036
    BCL11A-3552 CCAGAUGAACUUCCCAU 17 4037
    BCL11A-3553 CCAGCACUUAAGCAAAC 17 4038
    BCL11A-3554 CCCAGCACUUAAGCAAA 17 4039
    BCL11A-3555 CCCCACGCCUGGGAUGAGUG 20 4040
    BCL11A-3556 CCCCAGCACUUAAGCAA 17 4041
    BCL11A-3557 CCCCUUCACCAAUCGAG 17 4042
    BCL11A-3558 CCCGUUGGGAGCUCCAG 17 4043
    BCL11A-3559 + CCCUUCUGGAGCUCCCA 17 4044
    BCL11A-3560 CCGUUGGGAGCUCCAGA 17 4045
    BCL11A-3561 CCUGUGGGCAGUGCCAG 17 4046
    BCL11A-3562 CGGCCCGUUGGGAGCUC 17 4047
    BCL11A-3563 CGGCCCGUUGGGAGCUCCAG 20 4048
    BCL11A-3564 CGUUGGGAGCUCCAGAA 17 4049
    BCL11A-3565 + CGUUUGUGCUCGAUAAAAAU 20 4050
    BCL11A-3566 CUAGAGGAAUUUGCCCCAAA 20 4051
    BCL11A-3567 + CUCAUCCCAGGCGUGGGGAU 20 4052
    BCL11A-3568 + CUCCAUGUGCAGAACGA 17 4053
    BCL11A-3569 + CUCCAUGUGCAGAACGAGGG 20 4054
    BCL11A-3570 CUCCCCUCGUUCUGCAC 17 4055
    BCL11A-3571 CUCCUCCCCUCGUUCUGCAC 20 4056
    BCL11A-3572 CUCUAAUCCCCACGCCUGGG 20 4057
    BCL11A-3573 + CUGCACUCAUCCCAGGC 17 4058
    BCL11A-3574 CUUAUUUUUAUCGAGCACAA 20 4059
    BCL11A-3575 CUUCCCCUUCACCAAUCGAG 20 4060
    BCL11A-3576 + UAAGAAUGUCCCCCAAU 17 4061
    BCL11A-3577 UAAUCCCCACGCCUGGG 17 4062
    BCL11A-3578 + UAGAGCUCCAUGUGCAGAAC 20 4063
    BCL11A-3579 UAGAGGAAUUUGCCCCAAAC 20 4064
    BCL11A-3580 + UAUCCACAGCUUUUUCUAAG 20 4065
    BCL11A-3581 UCACCUGUGGGCAGUGCCAG 20 4066
    BCL11A-3582 + UCAUCUCGAUUGGUGAA 17 4067
    BCL11A-3583 + UCAUCUGGCACUGCCCACAG 20 4068
    BCL11A-3584 + UCAUCUGUAAGAAUGGCUUC 20 4069
    BCL11A-3585 UCAUGACCUCCUCACCU 17 4070
    BCL11A-3586 + UCCAUGUGCAGAACGAG 17 4071
    BCL11A-3587 + UCCAUGUGCAGAACGAGGGG 20 4072
    BCL11A-3588 UCCCCUCGUUCUGCACA 17 4073
    BCL11A-3589 UCCUCCCCUCGUUCUGCACA 20 4074
    BCL11A-3590 UCUGCUUAGAAAAAGCU 17 4075
    BCL11A-3591 + UCUGGCACUGCCCACAG 17 4076
    BCL11A-3592 + UCUGGCACUGCCCACAGGUG 20 4077
    BCL11A-3593 + UCUGUAAGAAUGGCUUC 17 4078
    BCL11A-3594 UGAAAAAAGCAUCCAAUCCC 20 4079
    BCL11A-3595 UGAAGCCAUUCUUACAGAUG 20 4080
    BCL11A-3596 + UGCCAACCUCCACGGGA 17 4081
    BCL11A-3597 UGCCAGAUGAACUUCCCAUU 20 4082
    BCL11A-3598 + UGCUUUUUUCAUCUCGAUUG 20 4083
    BCL11A-3599 UGGAGCUCUAAUCCCCACGC 20 4084
    BCL11A-3600 + UGGCACUGCCCACAGGU 17 4085
    BCL11A-3601 UGGCAUCCAGGUCACGC 17 4086
    BCL11A-3602 + UGGGGUUUGCCUUGCUUGCG 20 4087
    BCL11A-3603 UUAUUUUUAUCGAGCACAAA 20 4088
    BCL11A-3604 + UUCAUCUCGAUUGGUGA 17 4089
    BCL11A-3605 UUGGCAUCCAGGUCACGCCA 20 4090
    BCL11A-3606 + UUGUGCUCGAUAAAAAU 17 4091
    BCL11A-3607 + UUUCAUCUCGAUUGGUG 17 4092
    BCL11A-3608 + UUUCAUCUCGAUUGGUGAAG 20 4093
    BCL11A-3609 + UUUUCAUCUCGAUUGGUGAA 20 4094
    BCL11A-3610 UUUUUAUCGAGCACAAA 17 4095
    BCL11A-3611 + UUUUUCAUCUCGAUUGGUGA 20 4096
    BCL11A-3612 + UUUUUUCAUCUCGAUUG 17 4097
    BCL11A-3613 + UUUUUUCAUCUCGAUUGGUG 20 4098
  • Table 5E provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to fifth tier parameters. The targeting domains target outside the first 500 bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 5E
    Target SEQ
    5th Tier DNA Targeting Site ID
    gRNA Name Strand Domain Length NO
    BCL11A-3614 + UCGUCGGACUUGACCGUCAU 20 4099
    BCL11A-3615 + GUCGUCGGACUUGACCGUCA 20 4100
    BCL11A-3616 + CGUCGUCGGACUUGACCGUC 20 4101
    BCL11A-3617 + CGUCGGACUUGACCGUCAUG 20 4102
    BCL11A-3618 CCCAUAUUAGUGGUCCGGGC 20 4103
    BCL11A-3619 + GCGGUCCGACUCGCCGGCCA 20 4104
    BCL11A-3620 + CUCCGAGGAGUGCUCCGACG 20 4105
    BCL11A-3621 CCCCCAUUCGGCGUAGUACC 20 4106
    BCL11A-3622 + UCUCCGAGGAGUGCUCCGAC 20 4107
    BCL11A-3623 CCCGCGGGUUGGUAUCCCUU 20 4108
    BCL11A-3624 + GCGAGUACACGUUCUCCGUG 20 4109
    BCL11A-3625 CCCAUUCGGCGUAGUACCCA 20 4110
    BCL11A-3626 + CUCCGUGUUGGGCAUCGCGG 20 4111
    BCL11A-3627 + CCGCGCUUAUGCUUCUCGCC 20 4112
    BCL11A-3628 CGACGAAGACUCGGUGGCCG 20 4113
    BCL11A-3629 ACCCCCACCGCAUAGAGCGC 20 4114
    BCL11A-3630 + ACUACGCCGAAUGGGGGUGU 20 4115
    BCL11A-3631 + CCGGGCCCGGACCACUAAUA 20 4116
    BCL11A-3632 + CGCGUAGCCGGCGAGCCACU 20 4117
    BCL11A-3633 UCGGAGCACUCCUCGGAGAA 20 4118
    BCL11A-3634 CGGAGCACUCCUCGGAGAAC 20 4119
    BCL11A-3635 + UCUCUGGGUACUACGCCGAA 20 4120
    BCL11A-3636 + UGCCGCAGAACUCGCAUGAC 20 4121
    BCL11A-3637 + GAUACCAACCCGCGGGGUCA 20 4122
    BCL11A-3638 + GGAUACCAACCCGCGGGGUC 20 4123
    BCL11A-3639 + GGGAUACCAACCCGCGGGGU 20 4124
    BCL11A-3640 CCCCCACCGCAUAGAGCGCC 20 4125
    BCL11A-3641 + GGUUGGGGUCGUUCUCGCUC 20 4126
    BCL11A-3642 GCACGCCCCAUAUUAGUGGU 20 4127
    BCL11A-3643 UAAGCGCAUCAAGCUCGAGA 20 4128
    BCL11A-3644 + GUUCUCCGAGGAGUGCUCCG 20 4129
    BCL11A-3645 + UCUCGAGCUUGAUGCGCUUA 20 4130
    BCL11A-3646 CUAAGCGCAUCAAGCUCGAG 20 4131
    BCL11A-3647 GUCGGAGCACUCCUCGGAGA 20 4132
    BCL11A-3648 UGGCCGCGGCUGCUCCCCGG 20 4133
    BCL11A-3649 CCCCACCGCAUAGAGCGCCU 20 4134
    BCL11A-3650 + CCUGAAGGGAUACCAACCCG 20 4135
    BCL11A-3651 GCGCUUCUCCACACCGCCCG 20 4136
    BCL11A-3652 GCGCCCUGCCCGACGUCAUG 20 4137
    BCL11A-3653 AACCCGGCACCAGCGACUUG 20 4138
    BCL11A-3654 + CUCUGGGUACUACGCCGAAU 20 4139
    BCL11A-3655 + CCCGUUCUCCGGGAUCAGGU 20 4140
    BCL11A-3656 GAACGACCCCAACCUGAUCC 20 4141
    BCL11A-3657 + ACGCCGAAUGGGGGUGUGUG 20 4142
    BCL11A-3658 + GUCGCUGGUGCCGGGUUCCG 20 4143
    BCL11A-3659 CCCCGGGCGAGUCGGCCUCG 20 4144
    BCL11A-3660 + CGGUGCACCACCAGGUUGCU 20 4145
    BCL11A-3661 GUCCACCACCGAGACAUCAC 20 4146
    BCL11A-3662 UUAAUGGCCGCGGCUGCUCC 20 4147
    BCL11A-3663 + CUCUCUGGGUACUACGCCGA 20 4148
    BCL11A-3664 + GCGCAAACUCCCGUUCUCCG 20 4149
    BCL11A-3665 + CCCGGGCCCGGACCACUAAU 20 4150
    BCL11A-3666 + GCCCCCAGGCGCUCUAUGCG 20 4151
    BCL11A-3667 AUCGCCUUUUGCCUCCUCGU 20 4152
    BCL11A-3668 CCUCGUCGGAGCACUCCUCG 20 4153
    BCL11A-3669 + GAGCUUGAUGCGCUUAGAGA 20 4154
    BCL11A-3670 + CCCCGUUCUCCGGGAUCAGG 20 4155
    BCL11A-3671 CGGCCGCGAUGCCCAACACG 20 4156
    BCL11A-3672 + GCCCCCCGAGGCCGACUCGC 20 4157
    BCL11A-3673 CCCGGCCGCGAUGCCCAACA 20 4158
    BCL11A-3674 CUCCUCGUCGGAGCACUCCU 20 4159
    BCL11A-3675 + GUCUCGGUGGUGGACUAAAC 20 4160
    BCL11A-3676 + CCCCAGGCGCUCUAUGCGGU 20 4161
    BCL11A-3677 + GGUCGCACAGGUUGCACUUG 20 4162
    BCL11A-3678 + AGUCGCUGGUGCCGGGUUCC 20 4163
    BCL11A-3679 CCCGGUCAAGUCCAAGUCAU 20 4164
    BCL11A-3680 AGAACGACCCCAACCUGAUC 20 4165
    BCL11A-3681 + UCCGUGUUGGGCAUCGCGGC 20 4166
    BCL11A-3682 CCUCCUCGUCGGAGCACUCC 20 4167
    BCL11A-3683 UCACUUGGACCCCCACCGCA 20 4168
    BCL11A-3684 CCCAACCUGAUCCCGGAGAA 20 4169
    BCL11A-3685 ACUACGGCUUCGGGCUGAGC 20 4170
    BCL11A-3686 UUUGCGCUUCUCCACACCGC 20 4171
    BCL11A-3687 + AAGUCGCUGGUGCCGGGUUC 20 4172
    BCL11A-3688 CCCCAACCUGAUCCCGGAGA 20 4173
    BCL11A-3689 AAGACUCGGUGGCCGGCGAG 20 4174
    BCL11A-3690 GCGCGGCCACCUGGCCGAGG 20 4175
    BCL11A-3691 AAUCGCCUUUUGCCUCCUCG 20 4176
    BCL11A-3692 ACGACCCCAACCUGAUCCCG 20 4177
    BCL11A-3693 GAUCCCGGAGAACGGGGACG 20 4178
    BCL11A-3694 + GGGGCAGGUCGAACUCCUUC 20 4179
    BCL11A-3695 UGGCUAUGGAGCCUCCCGCC 20 4180
    BCL11A-3696 + CCCCCAGGCGCUCUAUGCGG 20 4181
    BCL11A-3697 GCGGUUGAAUCCAAUGGCUA 20 4182
    BCL11A-3698 CUACGGCUUCGGGCUGAGCC 20 4183
    BCL11A-3699 ACAGCUCGCGGGGCGCGGUC 20 4184
    BCL11A-3700 CCCCCCUGUUUAGUCCACCA 20 4185
    BCL11A-3701 + CGCAUGACUUGGACUUGACC 20 4186
    BCL11A-3702 CACGGAAGUCCCCUGACCCC 20 4187
    BCL11A-3703 CCUCCCGCCAUGGAUUUCUC 20 4188
    BCL11A-3704 + UCUCGGUGGUGGACUAAACA 20 4189
    BCL11A-3705 + UGAACUUGGCCACCACGGAC 20 4190
    BCL11A-3706 CUUCUCUAAGCGCAUCAAGC 20 4191
    BCL11A-3707 + AGCGCAAACUCCCGUUCUCC 20 4192
    BCL11A-3708 + UCGGUGGUGGACUAAACAGG 20 4193
    BCL11A-3709 CGCCACCACGAGAACAGCUC 20 4194
    BCL11A-3710 CUCCCGCCAUGGAUUUCUCU 20 4195
    BCL11A-3711 + CGAGCUUGAUGCGCUUAGAG 20 4196
    BCL11A-3712 + AUGCCCUGCAUGACGUCGGG 20 4197
    BCL11A-3713 UCUCUAAGCGCAUCAAGCUC 20 4198
    BCL11A-3714 + GUCCAAGUGAUGUCUCGGUG 20 4199
    BCL11A-3715 + CCCCCGAGGCCGACUCGCCC 20 4200
    BCL11A-3716 + CCCCGAGGCCGACUCGCCCG 20 4201
    BCL11A-3717 + GAAAUUUGAACGUCUUGCCG 20 4202
    BCL11A-3718 + GUCGCUGCGUCUGCCCUCUU 20 4203
    BCL11A-3719 UGGAGGCGGCGCGCCACCAC 20 4204
    BCL11A-3720 + CUUCUCGAGCUUGAUGCGCU 20 4205
    BCL11A-3721 + GAAGCGCAAACUCCCGUUCU 20 4206
    BCL11A-3722 GAGAGAGGCUUCCGGCCUGG 20 4207
    BCL11A-3723 UCCCCGGGCGAGUCGGCCUC 20 4208
    BCL11A-3724 + CAAGUCGCUGGUGCCGGGUU 20 4209
    BCL11A-3725 CAUAGAGCGCCUGGGGGCGG 20 4210
    BCL11A-3726 + CUCGGUGGUGGACUAAACAG 20 4211
    BCL11A-3727 + CCCCCCGAGGCCGACUCGCC 20 4212
    BCL11A-3728 GGUUUCUCUUGCAACACGCA 20 4213
    BCL11A-3729 + ACUUGGACUUGACCGGGGGC 20 4214
    BCL11A-3730 UGAUCCCGGAGAACGGGGAC 20 4215
    BCL11A-3731 + UGUCUGGAGUCUCCGAAGCU 20 4216
    BCL11A-3732 AUGGAUUUCUCUAGGAGACU 20 4217
    BCL11A-3733 UGCGGUUGAAUCCAAUGGCU 20 4218
    BCL11A-3734 CUCCCCGGGCGAGUCGGCCU 20 4219
    BCL11A-3735 CCUGAUCCCGGAGAACGGGG 20 4220
    BCL11A-3736 + UGUCUCGGUGGUGGACUAAA 20 4221
    BCL11A-3737 + CGGUGGUGGACUAAACAGGG 20 4222
    BCL11A-3738 + UGCCCACCAAGUCGCUGGUG 20 4223
    BCL11A-3739 CGUGGUGGCCAAGUUCAAGA 20 4224
    BCL11A-3740 CAUCACCCGAGUGCCUUUGA 20 4225
    BCL11A-3741 GCGGCAAGACGUUCAAAUUU 20 4226
    BCL11A-3742 + AAGGGCUCUCGAGCUUCCAU 20 4227
    BCL11A-3743 + GUCUGGAGUCUCCGAAGCUA 20 4228
    BCL11A-3744 CCCCGGCCGCGAUGCCCAAC 20 4229
    BCL11A-3745 + CUGUCAAAGGCACUCGGGUG 20 4230
    BCL11A-3746 + CUUGGACUUGACCGGGGGCU 20 4231
    BCL11A-3747 + GACUUGGACUUGACCGGGGG 20 4232
    BCL11A-3748 + UGCGUCUGCCCUCUUUUGAG 20 4233
    BCL11A-3749 + GGAGGCAAAAGGCGAUUGUC 20 4234
    BCL11A-3750 GCAACACGCACAGAACACUC 20 4235
    BCL11A-3751 + GCAGUAACCUUUGCAUAGGG 20 4236
    BCL11A-3752 UGGUGCACCGGCGCAGCCAC 20 4237
    BCL11A-3753 UGGUGGCCAAGUUCAAGAGC 20 4238
    BCL11A-3754 GCAUAAGCGCGGCCACCUGG 20 4239
    BCL11A-3755 + UUGCAUAGGGCUGGGCCGGC 20 4240
    BCL11A-3756 CCAACCUGAUCCCGGAGAAC 20 4241
    BCL11A-3757 AGAUGUGUGGCAGUUUUCGG 20 4242
    BCL11A-3758 CAGUUUUCGGAUGGAAGCUC 20 4243
    BCL11A-3759 GCUCCCCGGGCGAGUCGGCC 20 4244
    BCL11A-3760 GGGUGGACUACGGCUUCGGG 20 4245
    BCL11A-3761 UAUCCCUUCAGGACUAGGUG 20 4246
    BCL11A-3762 AUCUCGGGGCGCAGCGGCAC 20 4247
    BCL11A-3763 + CGCUCUUGAACUUGGCCACC 20 4248
    BCL11A-3764 GCACCGGCGCAGCCACACGG 20 4249
    BCL11A-3765 + GCUUCUCGCCCAGGACCUGG 20 4250
    BCL11A-3766 UCCCGGAGAACGGGGACGAG 20 4251
    BCL11A-3767 + CAGCACCCUGUCAAAGGCAC 20 4252
    BCL11A-3768 + CAUUCUGCACCUAGUCCUGA 20 4253
    BCL11A-3769 CUUUAACCUGCUAAGAAUAC 20 4254
    BCL11A-3770 GUCUCUCCACCGCCAGCUCC 20 4255
    BCL11A-3771 UCUCUCCACCGCCAGCUCCC 20 4256
    BCL11A-3772 + UGCUUCUCGCCCAGGACCUG 20 4257
    BCL11A-3773 + GCGCCGCCUCCAGGCUCAGC 20 4258
    BCL11A-3774 + AGAUCCCUCCGUCCAGCUCC 20 4259
    BCL11A-3775 CGAGAGGGUGGACUACGGCU 20 4260
    BCL11A-3776 + CGUCCAGCUCCCCGGGCGGU 20 4261
    BCL11A-3777 + CCAGCUCUCUAAGUCUCCUA 20 4262
    BCL11A-3778 + UCGCAUGACUUGGACUUGAC 20 4263
    BCL11A-3779 + GCACCAUGCCCUGCAUGACG 20 4264
    BCL11A-3780 + AAGGCGAUUGUCUGGAGUCU 20 4265
    BCL11A-3781 + GCCUGGAGGCCGCGUAGCCG 20 4266
    BCL11A-3782 GCGGCCACCUGGCCGAGGCC 20 4267
    BCL11A-3783 AGAAUACCAGGAUCAGUAUC 20 4268
    BCL11A-3784 GAUGUGUGGCAGUUUUCGGA 20 4269
    BCL11A-3785 UCUCCACACCGCCCGGGGAG 20 4270
    BCL11A-3786 CCUGGAGGCGGCGCGCCACC 20 4271
    BCL11A-3787 + CUGGUAUUCUUAGCAGGUUA 20 4272
    BCL11A-3788 + UAGAGAAGGGGCUCAGCGAG 20 4273
    BCL11A-3789 + GAGUGUUCUGUGCGUGUUGC 20 4274
    BCL11A-3790 AAUAACCCCUUUAACCUGCU 20 4275
    BCL11A-3791 + AAAGCGCCCUUCUGCCAGGC 20 4276
    BCL11A-3792 + GUCCAGCUCCCCGGGCGGUG 20 4277
    BCL11A-3793 + AAGGGCGGCUUGCUACCUGG 20 4278
    BCL11A-3794 + GAAAGCGCCCUUCUGCCAGG 20 4279
    BCL11A-3795 + AGGGCGGCUUGCUACCUGGC 20 4280
    BCL11A-3796 CGCGGGGCGCGGUCGUGGGC 20 4281
    BCL11A-3797 GCGAGGCCUUCCACCAGGUC 20 4282
    BCL11A-3798 + ACUUCCCGUGCCGCUGCGCC 20 4283
    BCL11A-3799 GCACAGAACACUCAUGGAUU 20 4284
    BCL11A-3800 + CCAGCUCCCCGGGCGGUGUG 20 4285
    BCL11A-3801 ACCGCCCGGGGAGCUGGACG 20 4286
    BCL11A-3802 + UGGUUGCAGUAACCUUUGCA 20 4287
    BCL11A-3803 AGGAGACUUAGAGAGCUGGC 20 4288
    BCL11A-3804 ACCGGCGCAGCCACACGGGC 20 4289
    BCL11A-3805 + ACAUUCUGCACCUAGUCCUG 20 4290
    BCL11A-3806 + GUGUUCUGUGCGUGUUGCAA 20 4291
    BCL11A-3807 UGGCCCUGGCCACCCAUCAC 20 4292
    BCL11A-3808 + UGCAUAGGGCUGGGCCGGCC 20 4293
    BCL11A-3809 AAUACCAGGAUCAGUAUCGA 20 4294
    BCL11A-3810 + UCCUGAAGGGAUACCAACCC 20 4295
    BCL11A-3811 + CUCCUAGAGAAAUCCAUGGC 20 4296
    BCL11A-3812 + UGGCGGUGGAGAGACCGUCG 20 4297
    BCL11A-3813 GGAUUUCUCUAGGAGACUUA 20 4298
    BCL11A-3814 + CUCGCAUGACUUGGACUUGA 20 4299
    BCL11A-3815 GAUCUCGGGGCGCAGCGGCA 20 4300
    BCL11A-3816 + GGUGGUGGACUAAACAGGGG 20 4301
    BCL11A-3817 + AGGCCUCGCUGAAGUGCUGC 20 4302
    BCL11A-3818 + CCACCAGGUUGCUCUGAAAU 20 4303
    BCL11A-3819 ACCGCAUAGAGCGCCUGGGG 20 4304
    BCL11A-3820 CCAGCAAGCUGAAGCGCCAC 20 4305
    BCL11A-3821 + GGCCUCGCUGAAGUGCUGCA 20 4306
    BCL11A-3822 CGUGCACCCAGGCCAGCAAG 20 4307
    BCL11A-3823 + GGCGGGAGGCUCCAUAGCCA 20 4308
    BCL11A-3824 + AGGAGGCAAAAGGCGAUUGU 20 4309
    BCL11A-3825 AAAGAUCCCUUCCUUAGCUU 20 4310
    BCL11A-3826 + GGAGUCUCCGAAGCUAAGGA 20 4311
    BCL11A-3827 + GCGCUUAGAGAAGGGGCUCA 20 4312
    BCL11A-3828 + CAGCUUUUUGGACAGGCCCC 20 4313
    BCL11A-3829 + GCACUCGGGUGAUGGGUGGC 20 4314
    BCL11A-3830 + CACGCCCACGACCGCGCCCC 20 4315
    BCL11A-3831 + AAGUUGUACAUGUGUAGCUG 20 4316
    BCL11A-3832 AGUCCGUGGUGGCCAAGUUC 20 4317
    BCL11A-3833 CCCGGAGAACGGGGACGAGG 20 4318
    BCL11A-3834 CGGGCAGGCCCAGCUCAAAA 20 4319
    BCL11A-3835 + UGGUAUUCUUAGCAGGUUAA 20 4320
    BCL11A-3836 + UUGUCUGCAAUAUGAAUCCC 20 4321
    BCL11A-3837 + GUCUCCUAGAGAAAUCCAUG 20 4322
    BCL11A-3838 + UGGACUUGACCGGGGGCUGG 20 4323
    BCL11A-3839 + UGGAGUCUCCGAAGCUAAGG 20 4324
    BCL11A-3840 + UGAGCUGGGCCUGCCCGGGC 20 4325
    BCL11A-3841 CAAAGAUCCCUUCCUUAGCU 20 4326
    BCL11A-3842 + UGCCACACAUCUUGAGCUCU 20 4327
    BCL11A-3843 CCGCCCGGGGAGCUGGACGG 20 4328
    BCL11A-3844 + AGAGAAGGGGCUCAGCGAGC 20 4329
    BCL11A-3845 GGAGACUUAGAGAGCUGGCA 20 4330
    BCL11A-3846 + GAAUCCCAUGGAGAGGUGGC 20 4331
    BCL11A-3847 + CGCUGAAGUGCUGCAUGGAG 20 4332
    BCL11A-3848 + AGGACAUUCUGCACCUAGUC 20 4333
    BCL11A-3849 + AAUCCCAUGGAGAGGUGGCU 20 4334
    BCL11A-3850 + UGAGCUCUCUGGGUACUACG 20 4335
    BCL11A-3851 GGGCCACAGGGACACUUGCG 20 4336
    BCL11A-3852 UAGGAGACUUAGAGAGCUGG 20 4337
    BCL11A-3853 CCUUUGACAGGGUGCUGCGG 20 4338
    BCL11A-3854 UGGCCGAGGCCGAGGGCCAC 20 4339
    BCL11A-3855 + GGAAGGGAUCUUUGAGCUGC 20 4340
    BCL11A-3856 + UCUAAGUAGAUUCUUAAUCC 20 4341
    BCL11A-3857 GGGGCGCAGCGGCACGGGAA 20 4342
    BCL11A-3858 CUGGCCGAGGCCGAGGGCCA 20 4343
    BCL11A-3859 CUCAAGAUGUGUGGCAGUUU 20 4344
    BCL11A-3860 + CGAAGCUAAGGAAGGGAUCU 20 4345
    BCL11A-3861 + UGCCAGCUCUCUAAGUCUCC 20 4346
    BCL11A-3862 + UCUCCUAGAGAAAUCCAUGG 20 4347
    BCL11A-3863 GCCACCACGAGAACAGCUCG 20 4348
    BCL11A-3864 + UCUGCAAUAUGAAUCCCAUG 20 4349
    BCL11A-3865 CAGCUCCAUGCAGCACUUCA 20 4350
    BCL11A-3866 GCCUGUCCAAAAAGCUGCUG 20 4351
    BCL11A-3867 UAAGAAUACCAGGAUCAGUA 20 4352
    BCL11A-3868 GGAUCUCGGGGCGCAGCGGC 20 4353
    BCL11A-3869 GGCAGUUUUCGGAUGGAAGC 20 4354
    BCL11A-3870 CGGUCGUGGGCGUGGGCGAC 20 4355
    BCL11A-3871 + GCAUCGCGGCCGGGGGCAGG 20 4356
    BCL11A-3872 AAUCUACUUAGAAAGCGAAC 20 4357
    BCL11A-3873 + AAGGGGUUAUUGUCUGCAAU 20 4358
    BCL11A-3874 + GGACUUGACCGGGGGCUGGG 20 4359
    BCL11A-3875 UCAUGGAUUAAGAAUCUACU 20 4360
    BCL11A-3876 AGAGGCUUCCGGCCUGGCAG 20 4361
    BCL11A-3877 GGCCUUCCACCAGGUCCUGG 20 4362
    BCL11A-3878 + UGGCGCUUCAGCUUGCUGGC 20 4363
    BCL11A-3879 CCGCAUAGAGCGCCUGGGGG 20 4364
    BCL11A-3880 + GGACCUGGUGGAAGGCCUCG 20 4365
    BCL11A-3881 CCUUCCACCAGGUCCUGGGC 20 4366
    BCL11A-3882 + UGUCUGCAAUAUGAAUCCCA 20 4367
    BCL11A-3883 GGAGCUGGACGGAGGGAUCU 20 4368
    BCL11A-3884 + GACUUGACCGGGGGCUGGGA 20 4369
    BCL11A-3885 UCCUUCCCAGCCACCUCUCC 20 4370
    BCL11A-3886 + CUCUUUUGAGCUGGGCCUGC 20 4371
    BCL11A-3887 UGCGCUUCUCCACACCGCCC 20 4372
    BCL11A-3888 + GCAAGAGAAACCAUGCACUG 20 4373
    BCL11A-3889 GGGAGCUGGACGGAGGGAUC 20 4374
    BCL11A-3890 + GUUCCGGGGAGCUGGCGGUG 20 4375
    BCL11A-3891 + UGAAUCCCAUGGAGAGGUGG 20 4376
    BCL11A-3892 + CGGGUUCCGGGGAGCUGGCG 20 4377
    BCL11A-3893 + GUGGACUAAACAGGGGGGGA 20 4378
    BCL11A-3894 + GGCUGCCCAGCAGCAGCUUU 20 4379
    BCL11A-3895 + GAAGGGAUCUUUGAGCUGCC 20 4380
    BCL11A-3896 CCUUCCCAGCCACCUCUCCA 20 4381
    BCL11A-3897 GCGCAGCGGCACGGGAAGUG 20 4382
    BCL11A-3898 + GGGUUCCGGGGAGCUGGCGG 20 4383
    BCL11A-3899 + UCCUCCUCGUCCCCGUUCUC 20 4384
    BCL11A-3900 GCAGCGGCACGGGAAGUGGA 20 4385
    BCL11A-3901 UGCUGGGCAGCCCCAGCUCG 20 4386
    BCL11A-3902 GGGCGCAGCGGCACGGGAAG 20 4387
    BCL11A-3903 ACACCGCCCGGGGAGCUGGA 20 4388
    BCL11A-3904 + CCCAUGGAGAGGUGGCUGGG 20 4389
    BCL11A-3905 + UUCCUCCUCGUCCCCGUUCU 20 4390
    BCL11A-3906 AUCUACUUAGAAAGCGAACA 20 4391
    BCL11A-3907 CCCGGGCAGGCCCAGCUCAA 20 4392
    BCL11A-3908 CACACCGCCCGGGGAGCUGG 20 4393
    BCL11A-3909 + ACUAAACAGGGGGGGAGUGG 20 4394
    BCL11A-3910 + GACCGGGGGCUGGGAGGGAG 20 4395
    BCL11A-3911 + GGGCCGGCCUGGGGACAGCG 20 4396
    BCL11A-3912 + GCAUAGGGCUGGGCCGGCCU 20 4397
    BCL11A-3913 AUUAAGAAUCUACUUAGAAA 20 4398
    BCL11A-3914 + CUAAACAGGGGGGGAGUGGG 20 4399
    BCL11A-3915 + UUGACCGGGGGCUGGGAGGG 20 4400
    BCL11A-3916 CGCGGUCGUGGGCGUGGGCG 20 4401
    BCL11A-3917 + GAGGGAGGGGGGGCGUCGCC 20 4402
    BCL11A-3918 GGAGAACGGGGACGAGGAGG 20 4403
    BCL11A-3919 + CUUGACCGGGGGCUGGGAGG 20 4404
    BCL11A-3920 + GGAGGGAGGGGGGGCGUCGC 20 4405
    BCL11A-3921 + ACCGGGGGCUGGGAGGGAGG 20 4406
    BCL11A-3922 CGCAGCGGCACGGGAAGUGG 20 4407
    BCL11A-3923 + GCGGAUUGCAGAGGAGGGAG 20 4408
    BCL11A-3924 + GGAGGGGGGGCGUCGCCAGG 20 4409
    BCL11A-3925 + GGCGGAUUGCAGAGGAGGGA 20 4410
    BCL11A-3926 + GAGGGGCGGAUUGCAGAGGA 20 4411
    BCL11A-3927 + GGGGCGGAUUGCAGAGGAGG 20 4412
    BCL11A-3928 GAGGAGCUGACGGAGAGCGA 20 4413
    BCL11A-3929 + UCCGAAAACUGCCACACAUC 20 4414
    BCL11A-3930 + CGGAUUGCAGAGGAGGGAGG 20 4415
    BCL11A-3931 + GGAGGGGCGGAUUGCAGAGG 20 4416
    BCL11A-3932 + GGGCGGAUUGCAGAGGAGGG 20 4417
    BCL11A-3933 + AGGAGGGGCGGAUUGCAGAG 20 4418
    BCL11A-3934 AGAACGGGGACGAGGAGGAA 20 4419
    BCL11A-3935 + GAGGGAGGAGGGGCGGAUUG 20 4420
    BCL11A-3936 UUGCGCUUCUCCACACCGCC 20 4421
    BCL11A-3937 AGCUGACGGAGAGCGAGAGG 20 4422
    BCL11A-3938 AGGAGGAGCUGACGGAGAGC 20 4423
    BCL11A-3939 + GGGGCUGGGAGGGAGGAGGG 20 4424
    BCL11A-3940 + GGGAGGAGGGGCGGAUUGCA 20 4425
    BCL11A-3941 + CCGUGUUGGGCAUCGCGGCC 20 4426
    BCL11A-3942 GAACGGGGACGAGGAGGAAG 20 4427
    BCL11A-3943 + GGAGGAGGGGCGGAUUGCAG 20 4428
    BCL11A-3944 GGAGGAGGAGCUGACGGAGA 20 4429
    BCL11A-3945 ACGGGGACGAGGAGGAAGAG 20 4430
    BCL11A-3946 AGGAGGAGGAGGAGCUGACG 20 4431
    BCL11A-3947 ACGACGAGGAAGAGGAAGAA 20 4432
    BCL11A-3948 ACGAGGAAGAGGAAGAAGAG 20 4433
    BCL11A-3949 AGGAGGAAGAGGAGGACGAC 20 4434
    BCL11A-3950 AAGAGGAGGACGACGAGGAA 20 4435
    BCL11A-3951 AGAGGAGGAGGAGGAGCUGA 20 4436
    BCL11A-3952 GGAGGAAGAGGAGGACGACG 20 4437
    BCL11A-3953 CGAGGAGGAAGAGGAGGACG 20 4438
    BCL11A-3954 CGAGGAAGAGGAAGAAGAGG 20 4439
    BCL11A-3955 AAGAGGAGGAGGAGGAGCUG 20 4440
    BCL11A-3956 CGACGAGGAAGAGGAAGAAG 20 4441
    BCL11A-3957 GGAGGACGACGAGGAAGAGG 20 4442
    BCL11A-3958 AGAGGAGGACGACGAGGAAG 20 4443
    BCL11A-3959 GGACGACGAGGAAGAGGAAG 20 4444
    BCL11A-3960 GGAAGAGGAGGACGACGAGG 20 4445
    BCL11A-3961 AGGAAGAAGAGGAGGAAGAG 20 4446
    BCL11A-3962 AAGAGGAAGAAGAGGAGGAA 20 4447
    BCL11A-3963 GGAAGAGGAAGAAGAGGAGG 20 4448
    BCL11A-3964 AAGAAGAGGAGGAAGAGGAG 20 4449
    BCL11A-3965 AAGAGGAGGAAGAGGAGGAG 20 4450
    BCL11A-3966 AGAGGAAGAAGAGGAGGAAG 20 4451
    BCL11A-3967 GGAAGAAGAGGAGGAAGAGG 20 4452
    BCL11A-3968 AGAAGAGGAGGAAGAGGAGG 20 4453
    BCL11A-3969 AGAGGAGGAAGAGGAGGAGG 20 4454
    BCL11A-3970 + UCGGACUUGACCGUCAU 17 4455
    BCL11A-3971 + GUCGGACUUGACCGUCA 17 4456
    BCL11A-3972 + CGUCGGACUUGACCGUC 17 4457
    BCL11A-3973 + CGGACUUGACCGUCAUG 17 4458
    BCL11A-3974 AUAUUAGUGGUCCGGGC 17 4459
    BCL11A-3975 + GUCCGACUCGCCGGCCA 17 4460
    BCL11A-3976 + CGAGGAGUGCUCCGACG 17 4461
    BCL11A-3977 CCAUUCGGCGUAGUACC 17 4462
    BCL11A-3978 + CCGAGGAGUGCUCCGAC 17 4463
    BCL11A-3979 GCGGGUUGGUAUCCCUU 17 4464
    BCL11A-3980 + AGUACACGUUCUCCGUG 17 4465
    BCL11A-3981 AUUCGGCGUAGUACCCA 17 4466
    BCL11A-3982 + CGUGUUGGGCAUCGCGG 17 4467
    BCL11A-3983 + CGCUUAUGCUUCUCGCC 17 4468
    BCL11A-3984 CGAAGACUCGGUGGCCG 17 4469
    BCL11A-3985 CCCACCGCAUAGAGCGC 17 4470
    BCL11A-3986 + ACGCCGAAUGGGGGUGU 17 4471
    BCL11A-3987 + GGCCCGGACCACUAAUA 17 4472
    BCL11A-3988 + GUAGCCGGCGAGCCACU 17 4473
    BCL11A-3989 GAGCACUCCUCGGAGAA 17 4474
    BCL11A-3990 AGCACUCCUCGGAGAAC 17 4475
    BCL11A-3991 + CUGGGUACUACGCCGAA 17 4476
    BCL11A-3992 + CGCAGAACUCGCAUGAC 17 4477
    BCL11A-3993 + ACCAACCCGCGGGGUCA 17 4478
    BCL11A-3994 + UACCAACCCGCGGGGUC 17 4479
    BCL11A-3995 + AUACCAACCCGCGGGGU 17 4480
    BCL11A-3996 CCACCGCAUAGAGCGCC 17 4481
    BCL11A-3997 + UGGGGUCGUUCUCGCUC 17 4482
    BCL11A-3998 CGCCCCAUAUUAGUGGU 17 4483
    BCL11A-3999 GCGCAUCAAGCUCGAGA 17 4484
    BCL11A-4000 + CUCCGAGGAGUGCUCCG 17 4485
    BCL11A-4001 + CGAGCUUGAUGCGCUUA 17 4486
    BCL11A-4002 AGCGCAUCAAGCUCGAG 17 4487
    BCL11A-4003 GGAGCACUCCUCGGAGA 17 4488
    BCL11A-4004 CCGCGGCUGCUCCCCGG 17 4489
    BCL11A-4005 CACCGCAUAGAGCGCCU 17 4490
    BCL11A-4006 + GAAGGGAUACCAACCCG 17 4491
    BCL11A-4007 CUUCUCCACACCGCCCG 17 4492
    BCL11A-4008 CCCUGCCCGACGUCAUG 17 4493
    BCL11A-4009 CCGGCACCAGCGACUUG 17 4494
    BCL11A-4010 + UGGGUACUACGCCGAAU 17 4495
    BCL11A-4011 + GUUCUCCGGGAUCAGGU 17 4496
    BCL11A-4012 CGACCCCAACCUGAUCC 17 4497
    BCL11A-4013 + CCGAAUGGGGGUGUGUG 17 4498
    BCL11A-4014 + GCUGGUGCCGGGUUCCG 17 4499
    BCL11A-4015 CGGGCGAGUCGGCCUCG 17 4500
    BCL11A-4016 + UGCACCACCAGGUUGCU 17 4501
    BCL11A-4017 CACCACCGAGACAUCAC 17 4502
    BCL11A-4018 AUGGCCGCGGCUGCUCC 17 4503
    BCL11A-4019 + UCUGGGUACUACGCCGA 17 4504
    BCL11A-4020 + CAAACUCCCGUUCUCCG 17 4505
    BCL11A-4021 + GGGCCCGGACCACUAAU 17 4506
    BCL11A-4022 + CCCAGGCGCUCUAUGCG 17 4507
    BCL11A-4023 GCCUUUUGCCUCCUCGU 17 4508
    BCL11A-4024 CGUCGGAGCACUCCUCG 17 4509
    BCL11A-4025 + CUUGAUGCGCUUAGAGA 17 4510
    BCL11A-4026 + CGUUCUCCGGGAUCAGG 17 4511
    BCL11A-4027 CCGCGAUGCCCAACACG 17 4512
    BCL11A-4028 + CCCCGAGGCCGACUCGC 17 4513
    BCL11A-4029 GGCCGCGAUGCCCAACA 17 4514
    BCL11A-4030 CUCGUCGGAGCACUCCU 17 4515
    BCL11A-4031 + UCGGUGGUGGACUAAAC 17 4516
    BCL11A-4032 + CAGGCGCUCUAUGCGGU 17 4517
    BCL11A-4033 + CGCACAGGUUGCACUUG 17 4518
    BCL11A-4034 + CGCUGGUGCCGGGUUCC 17 4519
    BCL11A-4035 GGUCAAGUCCAAGUCAU 17 4520
    BCL11A-4036 ACGACCCCAACCUGAUC 17 4521
    BCL11A-4037 + GUGUUGGGCAUCGCGGC 17 4522
    BCL11A-4038 CCUCGUCGGAGCACUCC 17 4523
    BCL11A-4039 CUUGGACCCCCACCGCA 17 4524
    BCL11A-4040 AACCUGAUCCCGGAGAA 17 4525
    BCL11A-4041 ACGGCUUCGGGCUGAGC 17 4526
    BCL11A-4042 GCGCUUCUCCACACCGC 17 4527
    BCL11A-4043 + UCGCUGGUGCCGGGUUC 17 4528
    BCL11A-4044 CAACCUGAUCCCGGAGA 17 4529
    BCL11A-4045 ACUCGGUGGCCGGCGAG 17 4530
    BCL11A-4046 CGGCCACCUGGCCGAGG 17 4531
    BCL11A-4047 CGCCUUUUGCCUCCUCG 17 4532
    BCL11A-4048 ACCCCAACCUGAUCCCG 17 4533
    BCL11A-4049 CCCGGAGAACGGGGACG 17 4534
    BCL11A-4050 + GCAGGUCGAACUCCUUC 17 4535
    BCL11A-4051 CUAUGGAGCCUCCCGCC 17 4536
    BCL11A-4052 + CCAGGCGCUCUAUGCGG 17 4537
    BCL11A-4053 GUUGAAUCCAAUGGCUA 17 4538
    BCL11A-4054 CGGCUUCGGGCUGAGCC 17 4539
    BCL11A-4055 GCUCGCGGGGCGCGGUC 17 4540
    BCL11A-4056 CCCUGUUUAGUCCACCA 17 4541
    BCL11A-4057 + AUGACUUGGACUUGACC 17 4542
    BCL11A-4058 GGAAGUCCCCUGACCCC 17 4543
    BCL11A-4059 CCCGCCAUGGAUUUCUC 17 4544
    BCL11A-4060 + CGGUGGUGGACUAAACA 17 4545
    BCL11A-4061 + ACUUGGCCACCACGGAC 17 4546
    BCL11A-4062 CUCUAAGCGCAUCAAGC 17 4547
    BCL11A-4063 + GCAAACUCCCGUUCUCC 17 4548
    BCL11A-4064 + GUGGUGGACUAAACAGG 17 4549
    BCL11A-4065 CACCACGAGAACAGCUC 17 4550
    BCL11A-4066 CCGCCAUGGAUUUCUCU 17 4551
    BCL11A-4067 + GCUUGAUGCGCUUAGAG 17 4552
    BCL11A-4068 + CCCUGCAUGACGUCGGG 17 4553
    BCL11A-4069 CUAAGCGCAUCAAGCUC 17 4554
    BCL11A-4070 + CAAGUGAUGUCUCGGUG 17 4555
    BCL11A-4071 + CCGAGGCCGACUCGCCC 17 4556
    BCL11A-4072 + CGAGGCCGACUCGCCCG 17 4557
    BCL11A-4073 + AUUUGAACGUCUUGCCG 17 4558
    BCL11A-4074 + GCUGCGUCUGCCCUCUU 17 4559
    BCL11A-4075 AGGCGGCGCGCCACCAC 17 4560
    BCL11A-4076 + CUCGAGCUUGAUGCGCU 17 4561
    BCL11A-4077 + GCGCAAACUCCCGUUCU 17 4562
    BCL11A-4078 AGAGGCUUCCGGCCUGG 17 4563
    BCL11A-4079 CCGGGCGAGUCGGCCUC 17 4564
    BCL11A-4080 + GUCGCUGGUGCCGGGUU 17 4565
    BCL11A-4081 AGAGCGCCUGGGGGCGG 17 4566
    BCL11A-4082 + GGUGGUGGACUAAACAG 17 4567
    BCL11A-4083 + CCCGAGGCCGACUCGCC 17 4568
    BCL11A-4084 UUCUCUUGCAACACGCA 17 4569
    BCL11A-4085 + UGGACUUGACCGGGGGC 17 4570
    BCL11A-4086 UCCCGGAGAACGGGGAC 17 4571
    BCL11A-4087 + CUGGAGUCUCCGAAGCU 17 4572
    BCL11A-4088 GAUUUCUCUAGGAGACU 17 4573
    BCL11A-4089 GGUUGAAUCCAAUGGCU 17 4574
    BCL11A-4090 CCCGGGCGAGUCGGCCU 17 4575
    BCL11A-4091 GAUCCCGGAGAACGGGG 17 4576
    BCL11A-4092 + CUCGGUGGUGGACUAAA 17 4577
    BCL11A-4093 + UGGUGGACUAAACAGGG 17 4578
    BCL11A-4094 + CCACCAAGUCGCUGGUG 17 4579
    BCL11A-4095 GGUGGCCAAGUUCAAGA 17 4580
    BCL11A-4096 CACCCGAGUGCCUUUGA 17 4581
    BCL11A-4097 GCAAGACGUUCAAAUUU 17 4582
    BCL11A-4098 + GGCUCUCGAGCUUCCAU 17 4583
    BCL11A-4099 + UGGAGUCUCCGAAGCUA 17 4584
    BCL11A-4100 CGGCCGCGAUGCCCAAC 17 4585
    BCL11A-4101 + UCAAAGGCACUCGGGUG 17 4586
    BCL11A-4102 + GGACUUGACCGGGGGCU 17 4587
    BCL11A-4103 + UUGGACUUGACCGGGGG 17 4588
    BCL11A-4104 + GUCUGCCCUCUUUUGAG 17 4589
    BCL11A-4105 + GGCAAAAGGCGAUUGUC 17 4590
    BCL11A-4106 ACACGCACAGAACACUC 17 4591
    BCL11A-4107 + GUAACCUUUGCAUAGGG 17 4592
    BCL11A-4108 UGCACCGGCGCAGCCAC 17 4593
    BCL11A-4109 UGGCCAAGUUCAAGAGC 17 4594
    BCL11A-4110 UAAGCGCGGCCACCUGG 17 4595
    BCL11A-4111 + CAUAGGGCUGGGCCGGC 17 4596
    BCL11A-4112 ACCUGAUCCCGGAGAAC 17 4597
    BCL11A-4113 UGUGUGGCAGUUUUCGG 17 4598
    BCL11A-4114 UUUUCGGAUGGAAGCUC 17 4599
    BCL11A-4115 CCCCGGGCGAGUCGGCC 17 4600
    BCL11A-4116 UGGACUACGGCUUCGGG 17 4601
    BCL11A-4117 CCCUUCAGGACUAGGUG 17 4602
    BCL11A-4118 UCGGGGCGCAGCGGCAC 17 4603
    BCL11A-4119 + UCUUGAACUUGGCCACC 17 4604
    BCL11A-4120 CCGGCGCAGCCACACGG 17 4605
    BCL11A-4121 + UCUCGCCCAGGACCUGG 17 4606
    BCL11A-4122 CGGAGAACGGGGACGAG 17 4607
    BCL11A-4123 + CACCCUGUCAAAGGCAC 17 4608
    BCL11A-4124 + UCUGCACCUAGUCCUGA 17 4609
    BCL11A-4125 UAACCUGCUAAGAAUAC 17 4610
    BCL11A-4126 UCUCCACCGCCAGCUCC 17 4611
    BCL11A-4127 CUCCACCGCCAGCUCCC 17 4612
    BCL11A-4128 + UUCUCGCCCAGGACCUG 17 4613
    BCL11A-4129 + CCGCCUCCAGGCUCAGC 17 4614
    BCL11A-4130 + UCCCUCCGUCCAGCUCC 17 4615
    BCL11A-4131 GAGGGUGGACUACGGCU 17 4616
    BCL11A-4132 + CCAGCUCCCCGGGCGGU 17 4617
    BCL11A-4133 + GCUCUCUAAGUCUCCUA 17 4618
    BCL11A-4134 + CAUGACUUGGACUUGAC 17 4619
    BCL11A-4135 + CCAUGCCCUGCAUGACG 17 4620
    BCL11A-4136 + GCGAUUGUCUGGAGUCU 17 4621
    BCL11A-4137 + UGGAGGCCGCGUAGCCG 17 4622
    BCL11A-4138 GCCACCUGGCCGAGGCC 17 4623
    BCL11A-4139 AUACCAGGAUCAGUAUC 17 4624
    BCL11A-4140 GUGUGGCAGUUUUCGGA 17 4625
    BCL11A-4141 CCACACCGCCCGGGGAG 17 4626
    BCL11A-4142 GGAGGCGGCGCGCCACC 17 4627
    BCL11A-4143 + GUAUUCUUAGCAGGUUA 17 4628
    BCL11A-4144 + AGAAGGGGCUCAGCGAG 17 4629
    BCL11A-4145 + UGUUCUGUGCGUGUUGC 17 4630
    BCL11A-4146 AACCCCUUUAACCUGCU 17 4631
    BCL11A-4147 + GCGCCCUUCUGCCAGGC 17 4632
    BCL11A-4148 + CAGCUCCCCGGGCGGUG 17 4633
    BCL11A-4149 + GGCGGCUUGCUACCUGG 17 4634
    BCL11A-4150 + AGCGCCCUUCUGCCAGG 17 4635
    BCL11A-4151 + GCGGCUUGCUACCUGGC 17 4636
    BCL11A-4152 GGGGCGCGGUCGUGGGC 17 4637
    BCL11A-4153 AGGCCUUCCACCAGGUC 17 4638
    BCL11A-4154 + UCCCGUGCCGCUGCGCC 17 4639
    BCL11A-4155 CAGAACACUCAUGGAUU 17 4640
    BCL11A-4156 + GCUCCCCGGGCGGUGUG 17 4641
    BCL11A-4157 GCCCGGGGAGCUGGACG 17 4642
    BCL11A-4158 + UUGCAGUAACCUUUGCA 17 4643
    BCL11A-4159 AGACUUAGAGAGCUGGC 17 4644
    BCL11A-4160 GGCGCAGCCACACGGGC 17 4645
    BCL11A-4161 + UUCUGCACCUAGUCCUG 17 4646
    BCL11A-4162 + UUCUGUGCGUGUUGCAA 17 4647
    BCL11A-4163 CCCUGGCCACCCAUCAC 17 4648
    BCL11A-4164 + AUAGGGCUGGGCCGGCC 17 4649
    BCL11A-4165 ACCAGGAUCAGUAUCGA 17 4650
    BCL11A-4166 + UGAAGGGAUACCAACCC 17 4651
    BCL11A-4167 + CUAGAGAAAUCCAUGGC 17 4652
    BCL11A-4168 + CGGUGGAGAGACCGUCG 17 4653
    BCL11A-4169 UUUCUCUAGGAGACUUA 17 4654
    BCL11A-4170 + GCAUGACUUGGACUUGA 17 4655
    BCL11A-4171 CUCGGGGCGCAGCGGCA 17 4656
    BCL11A-4172 + GGUGGACUAAACAGGGG 17 4657
    BCL11A-4173 + CCUCGCUGAAGUGCUGC 17 4658
    BCL11A-4174 + CCAGGUUGCUCUGAAAU 17 4659
    BCL11A-4175 GCAUAGAGCGCCUGGGG 17 4660
    BCL11A-4176 GCAAGCUGAAGCGCCAC 17 4661
    BCL11A-4177 + CUCGCUGAAGUGCUGCA 17 4662
    BCL11A-4178 GCACCCAGGCCAGCAAG 17 4663
    BCL11A-4179 + GGGAGGCUCCAUAGCCA 17 4664
    BCL11A-4180 + AGGCAAAAGGCGAUUGU 17 4665
    BCL11A-4181 GAUCCCUUCCUUAGCUU 17 4666
    BCL11A-4182 + GUCUCCGAAGCUAAGGA 17 4667
    BCL11A-4183 + CUUAGAGAAGGGGCUCA 17 4668
    BCL11A-4184 + CUUUUUGGACAGGCCCC 17 4669
    BCL11A-4185 + CUCGGGUGAUGGGUGGC 17 4670
    BCL11A-4186 + GCCCACGACCGCGCCCC 17 4671
    BCL11A-4187 + UUGUACAUGUGUAGCUG 17 4672
    BCL11A-4188 CCGUGGUGGCCAAGUUC 17 4673
    BCL11A-4189 GGAGAACGGGGACGAGG 17 4674
    BCL11A-4190 GCAGGCCCAGCUCAAAA 17 4675
    BCL11A-4191 + UAUUCUUAGCAGGUUAA 17 4676
    BCL11A-4192 + UCUGCAAUAUGAAUCCC 17 4677
    BCL11A-4193 + UCCUAGAGAAAUCCAUG 17 4678
    BCL11A-4194 + ACUUGACCGGGGGCUGG 17 4679
    BCL11A-4195 + AGUCUCCGAAGCUAAGG 17 4680
    BCL11A-4196 + GCUGGGCCUGCCCGGGC 17 4681
    BCL11A-4197 AGAUCCCUUCCUUAGCU 17 4682
    BCL11A-4198 + CACACAUCUUGAGCUCU 17 4683
    BCL11A-4199 CCCGGGGAGCUGGACGG 17 4684
    BCL11A-4200 + GAAGGGGCUCAGCGAGC 17 4685
    BCL11A-4201 GACUUAGAGAGCUGGCA 17 4686
    BCL11A-4202 + UCCCAUGGAGAGGUGGC 17 4687
    BCL11A-4203 + UGAAGUGCUGCAUGGAG 17 4688
    BCL11A-4204 + ACAUUCUGCACCUAGUC 17 4689
    BCL11A-4205 + CCCAUGGAGAGGUGGCU 17 4690
    BCL11A-4206 + GCUCUCUGGGUACUACG 17 4691
    BCL11A-4207 CCACAGGGACACUUGCG 17 4692
    BCL11A-4208 GAGACUUAGAGAGCUGG 17 4693
    BCL11A-4209 UUGACAGGGUGCUGCGG 17 4694
    BCL11A-4210 CCGAGGCCGAGGGCCAC 17 4695
    BCL11A-4211 + AGGGAUCUUUGAGCUGC 17 4696
    BCL11A-4212 + AAGUAGAUUCUUAAUCC 17 4697
    BCL11A-4213 GCGCAGCGGCACGGGAA 17 4698
    BCL11A-4214 GCCGAGGCCGAGGGCCA 17 4699
    BCL11A-4215 AAGAUGUGUGGCAGUUU 17 4700
    BCL11A-4216 + AGCUAAGGAAGGGAUCU 17 4701
    BCL11A-4217 + CAGCUCUCUAAGUCUCC 17 4702
    BCL11A-4218 + CCUAGAGAAAUCCAUGG 17 4703
    BCL11A-4219 ACCACGAGAACAGCUCG 17 4704
    BCL11A-4220 + GCAAUAUGAAUCCCAUG 17 4705
    BCL11A-4221 CUCCAUGCAGCACUUCA 17 4706
    BCL11A-4222 UGUCCAAAAAGCUGCUG 17 4707
    BCL11A-4223 GAAUACCAGGAUCAGUA 17 4708
    BCL11A-4224 UCUCGGGGCGCAGCGGC 17 4709
    BCL11A-4225 AGUUUUCGGAUGGAAGC 17 4710
    BCL11A-4226 UCGUGGGCGUGGGCGAC 17 4711
    BCL11A-4227 + UCGCGGCCGGGGGCAGG 17 4712
    BCL11A-4228 CUACUUAGAAAGCGAAC 17 4713
    BCL11A-4229 + GGGUUAUUGUCUGCAAU 17 4714
    BCL11A-4230 + CUUGACCGGGGGCUGGG 17 4715
    BCL11A-4231 UGGAUUAAGAAUCUACU 17 4716
    BCL11A-4232 GGCUUCCGGCCUGGCAG 17 4717
    BCL11A-4233 CUUCCACCAGGUCCUGG 17 4718
    BCL11A-4234 + CGCUUCAGCUUGCUGGC 17 4719
    BCL11A-4235 CAUAGAGCGCCUGGGGG 17 4720
    BCL11A-4236 + CCUGGUGGAAGGCCUCG 17 4721
    BCL11A-4237 UCCACCAGGUCCUGGGC 17 4722
    BCL11A-4238 + CUGCAAUAUGAAUCCCA 17 4723
    BCL11A-4239 GCUGGACGGAGGGAUCU 17 4724
    BCL11A-4240 + UUGACCGGGGGCUGGGA 17 4725
    BCL11A-4241 UUCCCAGCCACCUCUCC 17 4726
    BCL11A-4242 + UUUUGAGCUGGGCCUGC 17 4727
    BCL11A-4243 GCUUCUCCACACCGCCC 17 4728
    BCL11A-4244 + AGAGAAACCAUGCACUG 17 4729
    BCL11A-4245 AGCUGGACGGAGGGAUC 17 4730
    BCL11A-4246 + CCGGGGAGCUGGCGGUG 17 4731
    BCL11A-4247 + AUCCCAUGGAGAGGUGG 17 4732
    BCL11A-4248 + GUUCCGGGGAGCUGGCG 17 4733
    BCL11A-4249 + GACUAAACAGGGGGGGA 17 4734
    BCL11A-4250 + UGCCCAGCAGCAGCUUU 17 4735
    BCL11A-4251 + GGGAUCUUUGAGCUGCC 17 4736
    BCL11A-4252 UCCCAGCCACCUCUCCA 17 4737
    BCL11A-4253 CAGCGGCACGGGAAGUG 17 4738
    BCL11A-4254 + UUCCGGGGAGCUGGCGG 17 4739
    BCL11A-4255 + UCCUCGUCCCCGUUCUC 17 4740
    BCL11A-4256 GCGGCACGGGAAGUGGA 17 4741
    BCL11A-4257 UGGGCAGCCCCAGCUCG 17 4742
    BCL11A-4258 CGCAGCGGCACGGGAAG 17 4743
    BCL11A-4259 CCGCCCGGGGAGCUGGA 17 4744
    BCL11A-4260 + AUGGAGAGGUGGCUGGG 17 4745
    BCL11A-4261 + CUCCUCGUCCCCGUUCU 17 4746
    BCL11A-4262 UACUUAGAAAGCGAACA 17 4747
    BCL11A-4263 GGGCAGGCCCAGCUCAA 17 4748
    BCL11A-4264 ACCGCCCGGGGAGCUGG 17 4749
    BCL11A-4265 + AAACAGGGGGGGAGUGG 17 4750
    BCL11A-4266 + CGGGGGCUGGGAGGGAG 17 4751
    BCL11A-4267 + CCGGCCUGGGGACAGCG 17 4752
    BCL11A-4268 + UAGGGCUGGGCCGGCCU 17 4753
    BCL11A-4269 AAGAAUCUACUUAGAAA 17 4754
    BCL11A-4270 + AACAGGGGGGGAGUGGG 17 4755
    BCL11A-4271 + ACCGGGGGCUGGGAGGG 17 4756
    BCL11A-4272 GGUCGUGGGCGUGGGCG 17 4757
    BCL11A-4273 + GGAGGGGGGGCGUCGCC 17 4758
    BCL11A-4274 GAACGGGGACGAGGAGG 17 4759
    BCL11A-4275 + GACCGGGGGCUGGGAGG 17 4760
    BCL11A-4276 + GGGAGGGGGGGCGUCGC 17 4761
    BCL11A-4277 + GGGGGCUGGGAGGGAGG 17 4762
    BCL11A-4278 AGCGGCACGGGAAGUGG 17 4763
    BCL11A-4279 + GAUUGCAGAGGAGGGAG 17 4764
    BCL11A-4280 + GGGGGGGCGUCGCCAGG 17 4765
    BCL11A-4281 + GGAUUGCAGAGGAGGGA 17 4766
    BCL11A-4282 + GGGCGGAUUGCAGAGGA 17 4767
    BCL11A-4283 + GCGGAUUGCAGAGGAGG 17 4768
    BCL11A-4284 GAGCUGACGGAGAGCGA 17 4769
    BCL11A-4285 + GAAAACUGCCACACAUC 17 4770
    BCL11A-4286 + AUUGCAGAGGAGGGAGG 17 4771
    BCL11A-4287 + GGGGCGGAUUGCAGAGG 17 4772
    BCL11A-4288 + CGGAUUGCAGAGGAGGG 17 4773
    BCL11A-4289 + AGGGGCGGAUUGCAGAG 17 4774
    BCL11A-4290 ACGGGGACGAGGAGGAA 17 4775
    BCL11A-4291 + GGAGGAGGGGCGGAUUG 17 4776
    BCL11A-4292 CGCUUCUCCACACCGCC 17 4777
    BCL11A-4293 UGACGGAGAGCGAGAGG 17 4778
    BCL11A-4294 AGGAGCUGACGGAGAGC 17 4779
    BCL11A-4295 + GCUGGGAGGGAGGAGGG 17 4780
    BCL11A-4296 + AGGAGGGGCGGAUUGCA 17 4781
    BCL11A-4297 + UGUUGGGCAUCGCGGCC 17 4782
    BCL11A-4298 CGGGGACGAGGAGGAAG 17 4783
    BCL11A-4299 + GGAGGGGCGGAUUGCAG 17 4784
    BCL11A-4300 GGAGGAGCUGACGGAGA 17 4785
    BCL11A-4301 GGGACGAGGAGGAAGAG 17 4786
    BCL11A-4302 AGGAGGAGGAGCUGACG 17 4787
    BCL11A-4303 ACGAGGAAGAGGAAGAA 17 4788
    BCL11A-4304 AGGAAGAGGAAGAAGAG 17 4789
    BCL11A-4305 AGGAAGAGGAGGACGAC 17 4790
    BCL11A-4306 AGGAGGACGACGAGGAA 17 4791
    BCL11A-4307 GGAGGAGGAGGAGCUGA 17 4792
    BCL11A-4308 GGAAGAGGAGGACGACG 17 4793
    BCL11A-4309 GGAGGAAGAGGAGGACG 17 4794
    BCL11A-4310 GGAAGAGGAAGAAGAGG 17 4795
    BCL11A-4311 AGGAGGAGGAGGAGCUG 17 4796
    BCL11A-4312 CGAGGAAGAGGAAGAAG 17 4797
    BCL11A-4313 GGACGACGAGGAAGAGG 17 4798
    BCL11A-4314 GGAGGACGACGAGGAAG 17 4799
    BCL11A-4315 CGACGAGGAAGAGGAAG 17 4800
    BCL11A-4316 AGAGGAGGACGACGAGG 17 4801
    BCL11A-4317 AAGAAGAGGAGGAAGAG 17 4802
    BCL11A-4318 AGGAAGAAGAGGAGGAA 17 4803
    BCL11A-4319 AGAGGAAGAAGAGGAGG 17 4804
    BCL11A-4320 AAGAGGAGGAAGAGGAG 17 4805
    BCL11A-4321 AGGAGGAAGAGGAGGAG 17 4806
    BCL11A-4322 GGAAGAAGAGGAGGAAG 17 4807
    BCL11A-4323 AGAAGAGGAGGAAGAGG 17 4808
    BCL11A-4324 AGAGGAGGAAGAGGAGG 17 4809
    BCL11A-4325 GGAGGAAGAGGAGGAGG 17 4810
  • Table 6A provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to first tier parameters. The targeting domains bind within first 500 bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 6A
    Target SEQ
    1st Tier DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4326 + UUCUGCACUCAUCCCAGGCG 20 4811
    BCL11A-4327 AUCCAGGUCACGCCAGAGGA 20 4812
    BCL11A-4328 + UGACCUGGAUGCCAACCUCC 20 4813
    BCL11A-4329 + GGGAUUGGAUGCUUUUUUCA 20 4814
    BCL11A-4330 + UGCACUCAUCCCAGGCG 17 4815
    BCL11A-4331 CAGGUCACGCCAGAGGA 17 4816
    BCL11A-4332 + CCUGGAUGCCAACCUCC 17 4817
    BCL11A-4333 + AUUGGAUGCUUUUUUCA 17 4818
  • Table 6B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene. The targeting domains target outside the first 500 bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 6B
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4334 GCUAUGGAGCCUCCCGC 17 4819
    BCL11A-4335 + GACUUGACCGUCAUGGG 17 4820
    BCL11A-4336 + UCCGACGAGGAGGCAAA 17 4821
    BCL11A-4337 + CGGGAGGCUCCAUAGCC 17 4822
    BCL11A-4338 + UCCGUGUUCGCUUUCUA 17 4823
    BCL11A-4339 AACACGCACAGAACACU 17 4824
    BCL11A-4340 UUCCCAGCCACCUCUCC 17 4825
    BCL11A-4341 + GGCUGGGAGGGAGGAGG 17 4826
    BCL11A-4342 + UCGGACUUGACCGUCAUGGG 20 4827
    BCL11A-4343 AUGGCUAUGGAGCCUCCCGC 20 4828
    BCL11A-4344 + UGCUCCGACGAGGAGGCAAA 20 4829
    BCL11A-4345 + UGGCGGGAGGCUCCAUAGCC 20 4830
    BCL11A-4346 UGCAACACGCACAGAACACU 20 4831
    BCL11A-4347 + ACUUCCGUGUUCGCUUUCUA 20 4832
    BCL11A-4348 UCCUUCCCAGCCACCUCUCC 20 4833
    BCL11A-4349 + GGGGGCUGGGAGGGAGGAGG 20 4834
  • Table 7A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary gRNA pairs are: BCL11A-5210 and BCL11A-5204, BCL11A-5211 and BCL11A-5204, BCL11A-5172 and BCL11A-5176, BCL11A-5172 and BCL11A-5186, BCL11A-5179 and BCL11A-5176, or BCL11A-5179 and BCL11A-5186.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene. For example, gRNA pairs that target upstream (i.e., 5′) of the enhancer region in the BCL11A gene (e.g., BCL11A-5210 and BCL11A-5204, or BCL11A-5211 and BCL11A-5204) can be paired with gRNA pairs that target downstream (i.e., 3′) of the enhancer region in the BCL11A gene (e.g., BCL11A-5172 and BCL11A-5176, BCL11A-5172 and BCL11A-5186, BCL11A-5179 and BCL11A-5176, or BCL11A-5179 and BCL11A-5186).
  • TABLE 7A
    Target
    5′ or SEQ
    1st Tier DNA Targeting Site 3′ of ID
    gRNA Name Strand Domain Length repeats NO
    BCL11A-5172 + GAAAAUACUU 20 3′ 4835
    ACUGUACUGC
    BCL11A-5173 GAAAGCAGUG 17 5′ 4836
    UAAGGCU
    BCL11A-5174 GGCUGUUUUG 20 5′ 4837
    GAAUGUAGAG
    BCL11A-5175 + GUGCUACUUA 20 3′ 4838
    UACAAUUCAC
  • Table 7B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 7B
    Target
    2nd Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5176 AAACUAUUUACAGCCAUAAC 20 3′ 4839
    BCL11A-5177 + AAAUACUUACUGUACUGCAG 20 3′ 4840
    BCL11A-5178 AACUAUUUACAGCCAUAACA 20 3′ 4841
    BCL11A-5179 + AAUACUUACUGUACUGC 17 3′ 4842
    BCL11A-5180 + ACAACUUGUGUUGCACU 17 5′ 4843
    BCL11A-5181 + AUACUUACUGUACUGCA 17 3′ 4844
    BCL11A-5182 + AUUCACUGGAAACCCUGUUA 20 3′ 4845
    BCL11A-5183 + AUUUAAGACGGGAAAAC 17 5′ 4846
    BCL11A-5184 + CACUGGAAACCCUGUUA 17 3′ 4847
    BCL11A-5185 + CUACUUAUACAAUUCAC 17 3′ 4848
    BCL11A-5186 CUAUUUACAGCCAUAAC 17 3′ 4849
    BCL11A-5187 UAAGAAAGCAGUGUAAGGCU 20 5′ 4850
    BCL11A-5188 + UACACAACUUGUGUUGCACU 20 5′ 4851
    BCL11A-5189 + UACUGUACUGCAGGGGAAUU 20 3′ 4852
    BCL11A-5190 + UACUUACUGUACUGCAG 17 3′ 4853
    BCL11A-5191 + UGUACUGCAGGGGAAUU 17 3′ 4854
  • Table 7C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to third tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 7C
    Target
    3rd Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5192 GAAUGUAGAGAGGCAGA 17 5′ 4855
    BCL11A-5193 GGAAUGUAGAGAGGCAG 17 5′ 4856
    BCL11A-5194 GUAAGUAUUUUCUUUCAUUG 20 3′ 4857
    BCL11A-5195 GUAAUUAAGAAAGCAGUGUA 20 5′ 4858
    BCL11A-5196 GUAUUUUCUUUCAUUGG 17 3′ 4859
  • Table 7D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to forth tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 7D
    Target
    4th Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5197 AAAAUAAUUAGAAUAAA 17 5′ 4860
    BCL11A-5198 + AAAAUACUUACUGUACUGCA 20 3′ 4861
    BCL11A-5199 + AAAAUUUAAGACGGGAAAAC 20 5′ 4862
    BCL11A-5200 AAGUAUUUUCUUUCAUU 17 3′ 4863
    BCL11A-5201 AAUGUAGAGAGGCAGAG 17 5′ 4864
    BCL11A-5202 + ACAUAAAAAUUUAAGAC 17 5′ 4865
    BCL11A-5203 AGAAAGCAGUGUAAGGC 17 5′ 4866
    BCL11A-5204 AGAAUAAAAGGCUGUUU 17 5′ 4867
    BCL11A-5205 AGUAAAAUAAUUAGAAUAAA 20 5′ 4868
    BCL11A-5206 AGUAAGUAUUUUCUUUCAUU 20 3′ 4869
    BCL11A-5207 AGUAUUUUCUUUCAUUG 17 3′ 4870
    BCL11A-5208 AUUAAGAAAGCAGUGUA 17 5′ 4871
    BCL11A-5209 AUUAGAAUAAAAGGCUGUUU 20 5′ 4872
    BCL11A-5210 + AUUAUUUUACUAGUGAAUUA 20 5′ 4873
    BCL11A-5211 + AUUUUACUAGUGAAUUA 17 5′ 4874
    BCL11A-5212 + CACAUAAAAAUUUAAGA 17 5′ 4875
    BCL11A-5213 CAGUAAGUAUUUUCUUUCAU 20 3′ 4876
    BCL11A-5214 + CUCACAUAAAAAUUUAAGAC 20 5′ 4877
    BCL11A-5215 UAAGUAUUUUCUUUCAU 17 3′ 4878
    BCL11A-5216 UAAGUAUUUUCUUUCAUUGG 20 3′ 4879
    BCL11A-5217 UAUUUACAGCCAUAACA 17 3′ 4880
    BCL11A-5218 + UCUCACAUAAAAAUUUAAGA 20 5′ 4881
    BCL11A-5219 UGGAAUGUAGAGAGGCAGAG 20 5′ 4882
    BCL11A-5220 UGUUUUGGAAUGUAGAG 17 5′ 4883
    BCL11A-5221 UUAAGAAAGCAGUGUAAGGC 20 5′ 4884
    BCL11A-5222 UUGGAAUGUAGAGAGGCAGA 20 5′ 4885
    BCL11A-5223 UUUGGAAUGUAGAGAGGCAG 20 5′ 4886
  • Table 8A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TS S) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 8A
    Target
    1st Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5224 GAGGGGCUGAUAUAACUUCU 20 5′ 4887
    BCL11A-5225 + GCUACUUAUACAAUUCA 17 3′ 4888
    BCL11A-5226 GGGCUGAUAUAACUUCU 17 5′ 4889
    BCL11A-5227 GUCUUAAAUUUUUAUGUGAG 20 5′ 4890
    BCL11A-5228 + GUGCUACUUAUACAAUUCAC 20 3′ 4891
  • Table 8B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 8B
    Target
    2nd Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5229 AACACAAGUUGUGUAGA 17 5′ 4892
    BCL11A-5230 ACUAUUUACAGCCAUAA 17 3′ 4893
    BCL11A-5231 AGCACACUGCUGUAAUU 17 5′ 4894
    BCL11A-5232 + AGUGCUACUUAUACAAUUCA 20 3′ 4895
    BCL11A-5233 + AUAGUUUGCUUCCCCCA 17 3′ 4896
    BCL11A-5234 AUGAGCACACUGCUGUAAUU 20 5′ 4897
    BCL11A-5235 CAAACUAUUUACAGCCAUAA 20 3′ 4898
    BCL11A-5236 CAGCCAUAACAGGGUUUCCA 20 3′ 4899
    BCL11A-5237 CCAUAACAGGGUUUCCA 17 3′ 4900
    BCL11A-5238 + CUACUUAUACAAUUCAC 17 3′ 4901
    BCL11A-5239 CUUUGGCUAUUGAUACUGAU 20 3′ 4902
    BCL11A-5240 + UAAAUAGUUUGCUUCCCCCA 20 3′ 4903
    BCL11A-5241 + UAGUUUGCUUCCCCCAAUGA 20 3′ 4904
    BCL11A-5242 UGCAACACAAGUUGUGUAGA 20 5′ 4905
    BCL11A-5243 UGGAAUGUAGAGAGGCA 17 5′ 4906
    BCL11A-5244 UGGCUAUUGAUACUGAU 17 3′ 4907
    BCL11A-5245 + UUUGCUUCCCCCAAUGA 17 3′ 4908
    BCL11A-5246 UUUUGGAAUGUAGAGAGGCA 20 5′ 4909
  • Table 8C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to third tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TS S) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 8C
    Target
    3rd Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5247 + GAAAAUACUUACUGUACUGC 20 3′ 4910
    BCL11A-5248 GAAUUGUAUAAGUAGCA 17 3′ 4911
    BCL11A-5249 GAGUUCUGUGUCAGCAAAAA 20 3′ 4912
    BCL11A-5250 + GGAAAACAGGAAGAUGCAUU 20 5′ 4913
    BCL11A-5251 GGAAUGUAGAGAGGCAG 17 5′ 4914
    BCL11A-5252 GGCUGUUUUGGAAUGUA 17 5′ 4915
    BCL11A-5253 GUAAGUAUUUUCUUUCA 17 3′ 4916
    BCL11A-5254 GUAAGUAUUUUCUUUCAUUG 20 3′ 4917
    BCL11A-5255 GUAUUUUCUUUCAUUGG 17 3′ 4918
  • Table 8D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to forth tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 8D
    Target
    4th Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5256 + AAAAAUUUAAGACGGGAAAA 20 5′ 4919
    BCL11A-5257 + AAAACAGGAAGAUGCAUUCU 20 5′ 4920
    BCL11A-5258 AAAACUAGAAAGUUUUA 17 3′ 4921
    BCL11A-5259 + AAAAUACUUACUGUACUGCA 20 3′ 4922
    BCL11A-5260 + AAAAUUUAAGACGGGAAAAC 20 5′ 4923
    BCL11A-5261 + AAACAGGAAGAUGCAUU 17 5′ 4924
    BCL11A-5262 AAAGGCUGUUUUGGAAUGUA 20 5′ 4925
    BCL11A-5263 + AAAUACUUACUGUACUG 17 3′ 4926
    BCL11A-5264 + AAAUACUUACUGUACUGCAG 20 3′ 4927
    BCL11A-5265 AAGAAAGCAGUGUAAGG 17 5′ 4928
    BCL11A-5266 AAGGCUGUUUUGGAAUG 17 5′ 4929
    BCL11A-5267 AAGUAUUUUCUUUCAUU 17 3′ 4930
    BCL11A-5268 + AAUACUUACUGUACUGC 17 3′ 4931
    BCL11A-5269 AAUUAGAAUAAAAGGCUGUU 20 5′ 4932
    BCL11A-5270 + AAUUAUUUUACUAGUGAAUU 20 5′ 4933
    BCL11A-5271 + AAUUUAAGACGGGAAAA 17 5′ 4934
    BCL11A-5272 + ACAGGAAGAUGCAUUCU 17 5′ 4935
    BCL11A-5273 ACAGUAAGUAUUUUCUUUCA 20 3′ 4936
    BCL11A-5274 + ACAUAAAAAUUUAAGAC 17 5′ 4937
    BCL11A-5275 + ACUUUCUAGUUUUGCUUAAC 20 3′ 4938
    BCL11A-5276 + AGAAAAUACUUACUGUACUG 20 3′ 4939
    BCL11A-5277 AGAAUAAAAGGCUGUUU 17 5′ 4940
    BCL11A-5278 AGCAAAACUAGAAAGUUUUA 20 3′ 4941
    BCL11A-5279 AGUAAGUAUUUUCUUUCAUU 20 3′ 4942
    BCL11A-5280 AGUAUUUUCUUUCAUUG 17 3′ 4943
    BCL11A-5281 AGUGAAUUGUAUAAGUAGCA 20 3′ 4944
    BCL11A-5282 + AUACUUACUGUACUGCA 17 3′ 4945
    BCL11A-5283 + AUCUCACAUAAAAAUUUAAG 20 5′ 4946
    BCL11A-5284 AUUAAGAAAGCAGUGUAAGG 20 5′ 4947
    BCL11A-5285 AUUAGAAUAAAAGGCUGUUU 20 5′ 4948
    BCL11A-5286 + AUUAUUUUACUAGUGAAUUA 20 5′ 4949
    BCL11A-5287 + AUUUAAGACGGGAAAAC 17 5′ 4950
    BCL11A-5288 + AUUUUACUAGUGAAUUA 17 5′ 4951
    BCL11A-5289 AUUUUCAUGUUAAGCAAAAC 20 3′ 4952
    BCL11A-5290 + CACAUAAAAAUUUAAGA 17 5′ 4953
    BCL11A-5291 CAGUAAGUAUUUUCUUUCAU 20 3′ 4954
    BCL11A-5292 CCGUCUUAAAUUUUUAU 17 5′ 4955
    BCL11A-5293 + CUCACAUAAAAAUUUAAGAC 20 5′ 4956
    BCL11A-5294 UAAAAGGCUGUUUUGGAAUG 20 5′ 4957
    BCL11A-5295 UAAGUAUUUUCUUUCAU 17 3′ 4958
    BCL11A-5296 UAAGUAUUUUCUUUCAUUGG 20 3′ 4959
    BCL11A-5297 UAAUUCACUAGUAAAAUAAU 20 5′ 4960
    BCL11A-5298 + UACUUACUGUACUGCAG 17 3′ 4961
    BCL11A-5299 UAGAAUAAAAGGCUGUU 17 5′ 4962
    BCL11A-5300 + UAUUUUACUAGUGAAUU 17 5′ 4963
    BCL11A-5301 + UCACAUAAAAAUUUAAG 17 5′ 4964
    BCL11A-5302 + UCUCACAUAAAAAUUUAAGA 20 5′ 4965
    BCL11A-5303 + UGUUUCAUUUUUUGCUGACA 20 3′ 4966
    BCL11A-5304 UGUUUUGGAAUGUAGAGAGG 20 5′ 4967
    BCL11A-5305 UUAAAUUUUUAUGUGAG 17 5′ 4968
    BCL11A-5306 + UUAUUCUAAUUAUUUUACUA 20 5′ 4969
    BCL11A-5307 UUCACUAGUAAAAUAAU 17 5′ 4970
    BCL11A-5308 UUCAUGUUAAGCAAAAC 17 3′ 4971
    BCL11A-5309 + UUCAUUUUUUGCUGACA 17 3′ 4972
    BCL11A-5310 UUCCCGUCUUAAAUUUUUAU 20 5′ 4973
    BCL11A-5311 + UUCUAAUUAUUUUACUA 17 5′ 4974
    BCL11A-5312 + UUCUAGUUUUGCUUAAC 17 3′ 4975
    BCL11A-5313 UUCUGUGUCAGCAAAAA 17 3′ 4976
    BCL11A-5314 UUUGGAAUGUAGAGAGG 17 5′ 4977
    BCL11A-5315 UUUGGAAUGUAGAGAGGCAG 20 5′ 4978
  • Table 9 provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of transcription start site, TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5′) of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3′) of the enhancer region in the BCL11A gene.
  • TABLE 9
    Target
    1st Tier DNA Site 5′ or 3′ of SEQ ID
    gRNA Name Strand Targeting Domain Length repeats NO
    BCL11A-5316 UUUGGAUCUUUGGCUAUUGA 20 3′ 4979
    BCL11A-5317 GGAUCUUUGGCUAUUGA 17 3′ 4980
  • Table 10A provides exemplary targeting domains for knocking down expression of the BCL11A gene according to first tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 10A
    1st Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4350 + GACGACGGCUCGGUUCACAU 20 4981
    BCL11A-4351 + GACGCCAGACGCGGCCCCCG 20 4982
    BCL11A-4352 + GCCUUGCUUGCGGCGAGACA 20 4983
    BCL11A-4353 + GGCUCCGCGGACGCCAGACG 20 4984
    BCL11A-4354 + GACGGCUCGGUUCACAU 17 4985
    BCL11A-4355 GCCGCGUCUGGCGUCCG 17 4986
    BCL11A-4356 + GCGGGCGGACGACGGCU 17 4987
  • Table 10B provides exemplary targeting domains for knocking down expression of the BCL11A gene according to second tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 10B
    2nd Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4357 + ACACGGCAAUGGUUCCAGAU 20 4988
    BCL11A-4358 ACCAUGUCUCGCCGCAAGCA 20 4989
    BCL11A-4359 + ACGACGGCUCGGUUCACAUC 20 4990
    BCL11A-4360 + AUUCCCGUUUGCUUAAGUGC 20 4991
    BCL11A-4361 CAUUUUAGAGUCCGCGUGUG 20 4992
    BCL11A-4362 + CGGACGCCAGACGCGGCCCC 20 4993
    BCL11A-4363 + CGGUUCACAUCGGGAGAGCC 20 4994
    BCL11A-4364 CUCCUGACGUUCAAGUUCGC 20 4995
    BCL11A-4365 UAAUAAUCACGAGAGCGCGC 20 4996
    BCL11A-4366 UCCUGACGUUCAAGUUCGCA 20 4997
    BCL11A-4367 + UCGGUUCACAUCGGGAGAGC 20 4998
    BCL11A-4368 + UCUUUUACCUCGACUCUCGG 20 4999
    BCL11A-4369 + UGCUUGCGGCGAGACAUGGU 20 5000
    BCL11A-4370 UUUAGAGUCCGCGUGUGUGG 20 5001
    BCL11A-4371 + ACGGCUCGGUUCACAUC 17 5002
    BCL11A-4372 AUGUCUCGCCGCAAGCA 17 5003
    BCL11A-4373 CUGACGUUCAAGUUCGC 17 5004
    BCL11A-4374 UAAUCACGAGAGCGCGC 17 5005
    BCL11A-4375 + UCCGCGGACGCCAGACG 17 5006
    BCL11A-4376 UGACGUUCAAGUUCGCA 17 5007
    BCL11A-4377 UUAGAGUCCGCGUGUGU 17 5008
    BCL11A-4378 + UUGCGGCGAGACAUGGU 17 5009
    BCL11A-4379 + UUGCUUGCGGCGAGACA 17 5010
    BCL11A-4380 + UUUACCUCGACUCUCGG 17 5011
    BCL11A-4381 UUUAGAGUCCGCGUGUG 17 5012
  • Table 10C provides exemplary targeting domains for knocking down expression of the BCL11A gene according to third tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 10C
    3rd Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4382 GAAAAAACCCUCAUCCCAUC 20 5013
    BCL11A-4383 + GAAAGGGGUGGCAGGGG 17 5014
    BCL11A-4384 + GAACUUGAACGUCAGGAGUC 20 5015
    BCL11A-4385 GAACUUGCAGCUCAGGG 17 5016
    BCL11A-4386 + GAAGAAAGGGGUGGCAG 17 5017
    BCL11A-4387 + GAAGAAAGGGGUGGCAGGGG 20 5018
    BCL11A-4388 + GAAGGGGAAGCUCACACCAA 20 5019
    BCL11A-4389 + GAAGGGGAGGAGGGAAG 17 5020
    BCL11A-4390 + GAAUUGUGGGAGAGCCGUCA 20 5021
    BCL11A-4391 + GACAAGCCAAUGGCCAGUGC 20 5022
    BCL11A-4392 + GACAGAGACACACAAAACAU 20 5023
    BCL11A-4393 + GACAUGAAAAAGAGACC 17 5024
    BCL11A-4394 + GACAUGGUGGGCUGCGGGGC 20 5025
    BCL11A-4395 + GACGCGGCCCCCGGGGG 17 5026
    BCL11A-4396 GACUAGAAGCAAAAGCG 17 5027
    BCL11A-4397 GACUAGAAGCAAAAGCGAGG 20 5028
    BCL11A-4398 + GAGAAGAAAGGGGUGGC 17 5029
    BCL11A-4399 + GAGAAGGGGAGGAGGGA 17 5030
    BCL11A-4400 + GAGACACACAAAACAUGGGC 20 5031
    BCL11A-4401 + GAGACAUGGUGGGCUGC 17 5032
    BCL11A-4402 + GAGAGAAGAAAGGGGUGGCA 20 5033
    BCL11A-4403 + GAGAGAAGAGAGAUAGA 17 5034
    BCL11A-4404 + GAGAGAAGGGGAGGAGGGAA 20 5035
    BCL11A-4405 + GAGAGAGAGAAGAGAGAUAG 20 5036
    BCL11A-4406 + GAGAGAGAUGAAAAAAA 17 5037
    BCL11A-4407 + GAGCAGGAGAGAAGGGG 17 5038
    BCL11A-4408 + GAGCAGGAGAGAAGGGGAGG 20 5039
    BCL11A-4409 + GAGCCGGGUUAGAAAGA 17 5040
    BCL11A-4410 + GAGGGGAGGGGGCGCUG 17 5041
    BCL11A-4411 + GAGGGGCGGGCCGAGGGGAG 20 5042
    BCL11A-4412 + GAGGGGGAGGUGCGGGG 17 5043
    BCL11A-4413 + GAGGGGGAGGUGCGGGGCGG 20 5044
    BCL11A-4414 GAGGUAAAAGAGAUAAA 17 5045
    BCL11A-4415 GAGUCCGCGUGUGUGGG 17 5046
    BCL11A-4416 GAGUCUCCUUCUUUCUAACC 20 5047
    BCL11A-4417 GAUGAAGAUAUUUUCUC 17 5048
    BCL11A-4418 GCAAAAGCGAGGGGGAGAGA 20 5049
    BCL11A-4419 GCACCUCCCCCUCCCCGCAC 20 5050
    BCL11A-4420 GCACUUGAACUUGCAGCUCA 20 5051
    BCL11A-4421 + GCAGGGAAGAUGAAUUG 17 5052
    BCL11A-4422 + GCAGGGCGAGCAGGAGAGAA 20 5053
    BCL11A-4423 + GCAGGGGUGGGAGGAAA 17 5054
    BCL11A-4424 + GCAGGGGUGGGAGGAAAGGG 20 5055
    BCL11A-4425 + GCCAAUGGCCAGUGCGGGGA 20 5056
    BCL11A-4426 GCCACCCCUUUCUUCUCUCC 20 5057
    BCL11A-4427 + GCCAGACGCGGCCCCCG 17 5058
    BCL11A-4428 GCCCCAGCGCCCCCUCCCCU 20 5059
    BCL11A-4429 + GCCCCCGGGGGAGGGGC 17 5060
    BCL11A-4430 GCCCGCCCCUCCCCCGG 17 5061
    BCL11A-4431 + GCCGAGGGGAGGGGGCGCUG 20 5062
    BCL11A-4432 + GCCGCGGCGGUGGCGUGGCC 20 5063
    BCL11A-4433 + GCCGGGAGAGAAGAAAG 17 5064
    BCL11A-4434 + GCCGGGAGAGAAGAAAGGGG 20 5065
    BCL11A-4435 + GCGAGACAUGGUGGGCUGCG 20 5066
    BCL11A-4436 + GCGCAGGGAAGAUGAAUUGU 20 5067
    BCL11A-4437 + GCGCCGCGGCGGUGGCG 17 5068
    BCL11A-4438 GCGCUCGCUGCGGCCAC 17 5069
    BCL11A-4439 + GCGGCCCCCGGGGGAGGGGC 20 5070
    BCL11A-4440 GCGGCGCUCGCUGCGGCCAC 20 5071
    BCL11A-4441 + GCGGCGGCGGCGGCGGC 17 5072
    BCL11A-4442 + GCGGCGGCGGCGGCGGCGGC 20 5073
    BCL11A-4443 + GCGGCGGCGGCGGCGGCGGG 20 5074
    BCL11A-4444 + GCGGCGGCGGCGGCGGG 17 5075
    BCL11A-4445 + GCGGCGGGCGGACGACGGCU 20 5076
    BCL11A-4446 + GCGGCGGUGGCGUGGCC 17 5077
    BCL11A-4447 + GCGGGCGGCGGCGGCGG 17 5078
    BCL11A-4448 + GCGGGCGGCGGCGGCGGCGG 20 5079
    BCL11A-4449 + GCGGGGAGGGGGAGGUG 17 5080
    BCL11A-4450 + GCGUGGCCGGGAGAGAAGAA 20 5081
    BCL11A-4451 + GCUCCCCCCCACACACG 17 5082
    BCL11A-4452 + GCUGGGGUUUGCCUUGCUUG 20 5083
    BCL11A-4453 + GGACAAGCCAAUGGCCAGUG 20 5084
    BCL11A-4454 + GGACACACAUCAGGGGC 17 5085
    BCL11A-4455 + GGACAGAGACACACAAAACA 20 5086
    BCL11A-4456 + GGACGCCAGACGCGGCCCCC 20 5087
    BCL11A-4457 GGACUAGAAGCAAAAGCGAG 20 5088
    BCL11A-4458 + GGAGAGAAGAAAGGGGUGGC 20 5089
    BCL11A-4459 + GGAGAGAAGGGGAGGAGGGA 20 5090
    BCL11A-4460 + GGAGAGCCGGGUUAGAAAGA 20 5091
    BCL11A-4461 + GGAGGGGCGGGCCGAGGGGA 20 5092
    BCL11A-4462 + GGAGGGGGAGGUGCGGGGCG 20 5093
    BCL11A-4463 + GGAGGGGGCGCUGGGGCCGC 20 5094
    BCL11A-4464 + GGCAGGGCGAGCAGGAGAGA 20 5095
    BCL11A-4465 + GGCAGGGGUGGGAGGAA 17 5096
    BCL11A-4466 GGCCACUGGUGAGCCCG 17 5097
    BCL11A-4467 + GGCCCCCGGGGGAGGGG 17 5098
    BCL11A-4468 GGCCCGCCCCUCCCCCG 17 5099
    BCL11A-4469 + GGCCGAGGGGAGGGGGCGCU 20 5100
    BCL11A-4470 + GGCCGCAGCGAGCGCCG 17 5101
    BCL11A-4471 + GGCCGCAGCGAGCGCCGCGG 20 5102
    BCL11A-4472 + GGCCGCGGGCUCACCAG 17 5103
    BCL11A-4473 + GGCCGGGAGAGAAGAAA 17 5104
    BCL11A-4474 + GGCGAGACAUGGUGGGCUGC 20 5105
    BCL11A-4475 + GGCGAGCAGGAGAGAAG 17 5106
    BCL11A-4476 + GGCGAGCAGGAGAGAAGGGG 20 5107
    BCL11A-4477 + GGCGCAGGGAAGAUGAAUUG 20 5108
    BCL11A-4478 + GGCGGCGGCGGCGGCGG 17 5109
    BCL11A-4479 + GGCGGCGGCGGCGGCGGCGG 20 5110
    BCL11A-4480 + GGCGGGCCGAGGGGAGG 17 5111
    BCL11A-4481 + GGCUGCGGGGCGGGCGG 17 5112
    BCL11A-4482 + GGCUGCGGGGCGGGCGGCGG 20 5113
    BCL11A-4483 + GGGAGAGAAGAAAGGGG 17 5114
    BCL11A-4484 + GGGAGGAAAGGGUGGGG 17 5115
    BCL11A-4485 + GGGAGGGGCGGGCCGAG 17 5116
    BCL11A-4486 + GGGAGGGGCGGGCCGAGGGG 20 5117
    BCL11A-4487 + GGGAGGGGGAGGUGCGGGGC 20 5118
    BCL11A-4488 + GGGAGGGGGCGCUGGGGCCG 20 5119
    BCL11A-4489 + GGGAGGUGCGGGGCGGG 17 5120
    BCL11A-4490 + GGGCCGAGGGGAGGGGGCGC 20 5121
    BCL11A-4491 + GGGCGAGCAGGAGAGAA 17 5122
    BCL11A-4492 + GGGCGGGCCGAGGGGAG 17 5123
    BCL11A-4493 + GGGGAAGCUCACACCAA 17 5124
    BCL11A-4494 + GGGGAGGGGCGGGCCGA 17 5125
    BCL11A-4495 + GGGGAGGGGGAGGUGCG 17 5126
    BCL11A-4496 + GGGGAGGGGGAGGUGCGGGG 20 5127
    BCL11A-4497 + GGGGAGGUGCGGGGCGG 17 5128
    BCL11A-4498 GGGGCCGCGUCUGGCGUCCG 20 5129
    BCL11A-4499 + GGGGCGGGCCGAGGGGA 17 5130
    BCL11A-4500 + GGGGCGGGCGGCGGCGG 17 5131
    BCL11A-4501 + GGGGCGGGCGGCGGCGGCGG 20 5132
    BCL11A-4502 + GGGGGAGGGGCGGGCCG 17 5133
    BCL11A-4503 + GGGGGAGGUGCGGGGCG 17 5134
    BCL11A-4504 + GGGGGCGCUGGGGCCGC 17 5135
    BCL11A-4505 + GGGGUGGCAGGGGUGGG 17 5136
    BCL11A-4506 + GGGGUGGGAGGAAAGGG 17 5137
    BCL11A-4507 + GGGGUGGGAGGAAAGGGUGG 20 5138
    BCL11A-4508 + GGGGUUUGCCUUGCUUG 17 5139
    BCL11A-4509 + GGGUGGGAGGAAAGGGU 17 5140
    BCL11A-4510 + GGGUGGGAGGAAAGGGUGGG 20 5141
    BCL11A-4511 GGUAAAAGAGAUAAAGG 17 5142
    BCL11A-4512 + GGUGGCAGGGGUGGGAGGAA 20 5143
    BCL11A-4513 + GGUGGGAGGAAAGGGUG 17 5144
    BCL11A-4514 + GGUGGGAGGAAAGGGUGGGG 20 5145
    BCL11A-4515 + GGUUCCAGAUGGGAUGA 17 5146
    BCL11A-4516 GUAUUAUUUCUAAUUUAUUU 20 5147
    BCL11A-4517 GUCGAGGUAAAAGAGAUAAA 20 5148
    BCL11A-4518 + GUGCGGGGAGGGGGAGGUGC 20 5149
    BCL11A-4519 + GUGCGGGGCGGGGGGCUCCG 20 5150
    BCL11A-4520 + GUGGCAGGGGUGGGAGGAAA 20 5151
    BCL11A-4521 + GUGGCCGGGAGAGAAGAAAG 20 5152
    BCL11A-4522 + GUGGGAGGAAAGGGUGG 17 5153
    BCL11A-4523 + GUGGGCUGCGGGGCGGG 17 5154
    BCL11A-4524 + GUGGGCUGCGGGGCGGGCGG 20 5155
    BCL11A-4525 GUGUGUGGGGGGGAGCA 17 5156
  • Table 10D provides exemplary targeting domains for knocking down expression of the BCL11A gene according to forth tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 10D
    4th Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4526 + AAAAAAAAAAAAAAAAAAAG 20 5157
    BCL11A-4527 + AAAAAAAAAAAAAAAAAAGA 20 5158
    BCL11A-4528 + AAAAAAAAAAAAAAAAG 17 5159
    BCL11A-4529 + AAAAAAAAAAAAAAAGA 17 5160
    BCL11A-4530 + AAAACAUGGGCAGGGCGAGC 20 5161
    BCL11A-4531 AAAACCCUCAUCCCAUC 17 5162
    BCL11A-4532 AAAACCUCCGAGAGUCG 17 5163
    BCL11A-4533 AAAAGCGAGGGGGAGAG 17 5164
    BCL11A-4534 AAAGCGAGGGGGAGAGA 17 5165
    BCL11A-4535 + AAAGGGGUGGCAGGGGU 17 5166
    BCL11A-4536 + AAAGGGGUGGCAGGGGUGGG 20 5167
    BCL11A-4537 + AAAUAAUACAAAGAUGGCGC 20 5168
    BCL11A-4538 AACCCCAGCACUUAAGCAAA 20 5169
    BCL11A-4539 + AACGUCAGGAGUCUGGA 17 5170
    BCL11A-4540 + AAGAAAGGGGUGGCAGGGGU 20 5171
    BCL11A-4541 + AAGAGACCAGGACAAGCCAA 20 5172
    BCL11A-4542 + AAGCCAAUGGCCAGUGC 17 5173
    BCL11A-4543 AAGCGAGGGGGAGAGAG 17 5174
    BCL11A-4544 + AAGUGCAUACACGGCAA 17 5175
    BCL11A-4545 + AAUAAUACAAAGAUGGCGCA 20 5176
    BCL11A-4546 + AAUACAAAGAUGGCGCA 17 5177
    BCL11A-4547 + AAUGGACACACAUCAGGGGC 20 5178
    BCL11A-4548 + AAUGGCCAGUGCGGGGA 17 5179
    BCL11A-4549 + AAUGGUUCCAGAUGGGAUGA 20 5180
    BCL11A-4550 + AAUUAAAUAAAAUUAAA 17 5181
    BCL11A-4551 + AAUUAGAAAUAAUACAAAGA 20 5182
    BCL11A-4552 AAUUUAUUUUGGAUGUCAAA 20 5183
    BCL11A-4553 + ACAAGCCAAUGGCCAGUGCG 20 5184
    BCL11A-4554 + ACACACAAAACAUGGGC 17 5185
    BCL11A-4555 + ACACCAAUGGACACACAUCA 20 5186
    BCL11A-4556 + ACAUGGGCAGGGCGAGC 17 5187
    BCL11A-4557 + ACCAAUGGACACACAUC 17 5188
    BCL11A-4558 ACCCCAGCACUUAAGCAAAC 20 5189
    BCL11A-4559 ACCCCUUUCUUCUCUCC 17 5190
    BCL11A-4560 + ACGCCAGACGCGGCCCC 17 5191
    BCL11A-4561 + ACGCCAGACGCGGCCCCCGG 20 5192
    BCL11A-4562 + ACGCGGCCCCCGGGGGA 17 5193
    BCL11A-4563 + ACGGCAAUGGUUCCAGA 17 5194
    BCL11A-4564 ACUAGAAGCAAAAGCGA 17 5195
    BCL11A-4565 ACUGAUGAAGAUAUUUUCUC 20 5196
    BCL11A-4566 ACUUGAACUUGCAGCUC 17 5197
    BCL11A-4567 ACUUGAACUUGCAGCUCAGG 20 5198
    BCL11A-4568 AGAAAAACCUCCGAGAGUCG 20 5199
    BCL11A-4569 + AGAAGAAAGGGGUGGCA 17 5200
    BCL11A-4570 + AGAAGGGGAGGAGGGAA 17 5201
    BCL11A-4571 + AGACACACAAAACAUGGGCA 20 5202
    BCL11A-4572 + AGACAUGGUGGGCUGCG 17 5203
    BCL11A-4573 + AGACAUGGUGGGCUGCGGGG 20 5204
    BCL11A-4574 + AGACCAGGACAAGCCAA 17 5205
    BCL11A-4575 + AGACGCGGCCCCCGGGGGAG 20 5206
    BCL11A-4576 + AGAGAAGAAAGGGGUGGCAG 20 5207
    BCL11A-4577 + AGAGAAGGGGAGGAGGGAAG 20 5208
    BCL11A-4578 + AGAGACACACAAAACAU 17 5209
    BCL11A-4579 + AGAGAGAAGAGAGAUAG 17 5210
    BCL11A-4580 + AGAGAGAGAAGAGAGAUAGA 20 5211
    BCL11A-4581 + AGAGAGAGAGAUGAAAAAAA 20 5212
    BCL11A-4582 AGAGUCCGCGUGUGUGG 17 5213
    BCL11A-4583 AGCAAAAGCGAGGGGGAGAG 20 5214
    BCL11A-4584 + AGCAGGAGAGAAGGGGAGGA 20 5215
    BCL11A-4585 + AGCCAAUGGCCAGUGCG 17 5216
    BCL11A-4586 + AGCCAAUGGCCAGUGCGGGG 20 5217
    BCL11A-4587 AGCCCCUGAUGUGUGUCCAU 20 5218
    BCL11A-4588 + AGCGAGCGCCGCGGCGG 17 5219
    BCL11A-4589 + AGCUGCAAGUUCAAGUG 17 5220
    BCL11A-4590 AGGACUAGAAGCAAAAGCGA 20 5221
    BCL11A-4591 + AGGAGAGAAGGGGAGGA 17 5222
    BCL11A-4592 + AGGGCGAGCAGGAGAGA 17 5223
    BCL11A-4593 + AGGGGCGGGCCGAGGGG 17 5224
    BCL11A-4594 + AGGGGCGGGCCGAGGGGAGG 20 5225
    BCL11A-4595 + AGGGGGAGGUGCGGGGC 17 5226
    BCL11A-4596 + AGGGGGAGGUGCGGGGCGGG 20 5227
    BCL11A-4597 + AGGGGGCGCUGGGGCCG 17 5228
    BCL11A-4598 + AGGGGUGGGAGGAAAGGGUG 20 5229
    BCL11A-4599 AGGUAAAAGAGAUAAAG 17 5230
    BCL11A-4600 AGUCCGCGUGUGUGGGG 17 5231
    BCL11A-4601 AGUCGAGGUAAAAGAGAUAA 20 5232
    BCL11A-4602 + AGUGCGGGGAGGGGGAGGUG 20 5233
    BCL11A-4603 + AGUGGCCGCAGCGAGCGCCG 20 5234
    BCL11A-4604 + AUAAUUAUUAUUACUAUUAU 20 5235
    BCL11A-4605 + AUCUCUUUUACCUCGACUCU 20 5236
    BCL11A-4606 + AUGGCCAGUGCGGGGAG 17 5237
    BCL11A-4607 + AUGGUGGGCUGCGGGGC 17 5238
    BCL11A-4608 + AUGGUGGGCUGCGGGGCGGG 20 5239
    BCL11A-4609 + AUUAUUAUUACUAUUAU 17 5240
    BCL11A-4610 AUUUUAGAGUCCGCGUGUGU 20 5241
    BCL11A-4611 CAAAAGCGAGGGGGAGAGAG 20 5242
    BCL11A-4612 + CAAAAGUGCAUACACGGCAA 20 5243
    BCL11A-4613 + CAAGCCAAUGGCCAGUG 17 5244
    BCL11A-4614 + CAAUGGACACACAUCAG 17 5245
    BCL11A-4615 + CAAUGGCCAGUGCGGGG 17 5246
    BCL11A-4616 + CAAUGGCCAGUGCGGGGAGG 20 5247
    BCL11A-4617 + CAAUGGUUCCAGAUGGGAUG 20 5248
    BCL11A-4618 + CACACAAAACAUGGGCA 17 5249
    BCL11A-4619 + CACACCAAUGGACACACAUC 20 5250
    BCL11A-4620 + CACCAAUGGACACACAUCAG 20 5251
    BCL11A-4621 CACCGCCGCGGCGCUCGCUG 20 5252
    BCL11A-4622 CACUGGCCAUUGGCUUGUCC 20 5253
    BCL11A-4623 CACUUGAACUUGCAGCUCAG 20 5254
    BCL11A-4624 + CAGACGCGGCCCCCGGGGGA 20 5255
    BCL11A-4625 + CAGAGACACACAAAACA 17 5256
    BCL11A-4626 CAGGACUAGAAGCAAAAGCG 20 5257
    BCL11A-4627 + CAGGAGAGAAGGGGAGG 17 5258
    BCL11A-4628 + CAGGGAAGAUGAAUUGU 17 5259
    BCL11A-4629 + CAGGGCGAGCAGGAGAGAAG 20 5260
    BCL11A-4630 + CAGGGGUGGGAGGAAAGGGU 20 5261
    BCL11A-4631 + CAUGGUGGGCUGCGGGG 17 5262
    BCL11A-4632 + CCAAUGGACACACAUCA 17 5263
    BCL11A-4633 + CCAAUGGCCAGUGCGGGGAG 20 5264
    BCL11A-4634 + CCAGACGCGGCCCCCGG 17 5265
    BCL11A-4635 + CCAGACGCGGCCCCCGGGGG 20 5266
    BCL11A-4636 CCAGCACUUAAGCAAAC 17 5267
    BCL11A-4637 CCAGCGCCCCCUCCCCU 17 5268
    BCL11A-4638 + CCAGUGCGGGGAGGGGG 17 5269
    BCL11A-4639 CCCAGCACUUAAGCAAA 17 5270
    BCL11A-4640 CCCCCGGGGGCCGCGUC 17 5271
    BCL11A-4641 CCCCUCCCCGCACUGGCCAU 20 5272
    BCL11A-4642 + CCCGGGGGAGGGGCGGGCCG 20 5273
    BCL11A-4643 + CCCGUUUGCUUAAGUGC 17 5274
    BCL11A-4644 CCCUCGGCCCGCCCCUCCCC 20 5275
    BCL11A-4645 CCCUGAUGUGUGUCCAU 17 5276
    BCL11A-4646 + CCGAGGGGAGGGGGCGC 17 5277
    BCL11A-4647 CCGCGUGUGUGGGGGGGAGC 20 5278
    BCL11A-4648 + CCGGGGGAGGGGCGGGCCGA 20 5279
    BCL11A-4649 + CCGUUUGCUUAAGUGCU 17 5280
    BCL11A-4650 CCUCCCCCGGGGGCCGCGUC 20 5281
    BCL11A-4651 CCUCCCCCUCCCCGCAC 17 5282
    BCL11A-4652 CCUCGGCCCGCCCCUCCCCC 20 5283
    BCL11A-4653 + CCUGCUCCCCCCCACACACG 20 5284
    BCL11A-4654 + CGAGACAUGGUGGGCUG 17 5285
    BCL11A-4655 + CGAGCGCCGCGGCGGUGGCG 20 5286
    BCL11A-4656 + CGAGGGGAGGGGGCGCU 17 5287
    BCL11A-4657 CGAGGUAAAAGAGAUAA 17 5288
    BCL11A-4658 CGAGGUAAAAGAGAUAAAGG 20 5289
    BCL11A-4659 CGCACUUGAACUUGCAGCUC 20 5290
    BCL11A-4660 + CGCAGCGAGCGCCGCGG 17 5291
    BCL11A-4661 + CGCAGCGAGCGCCGCGGCGG 20 5292
    BCL11A-4662 + CGCCAGACGCGGCCCCC 17 5293
    BCL11A-4663 CGCCGCGGCGCUCGCUG 17 5294
    BCL11A-4664 + CGCCGCGGCGGUGGCGUGGC 20 5295
    BCL11A-4665 + CGCGGCCCCCGGGGGAG 17 5296
    BCL11A-4666 + CGCGGCCCCCGGGGGAGGGG 20 5297
    BCL11A-4667 + CGCGGCGGUGGCGUGGC 17 5298
    BCL11A-4668 CGCGUGUGUGGGGGGGAGCA 20 5299
    BCL11A-4669 + CGGCAAUGGUUCCAGAU 17 5300
    BCL11A-4670 CGGCCACGCCACCGCCG 17 5301
    BCL11A-4671 CGGCCCGCCCCUCCCCC 17 5302
    BCL11A-4672 + CGGCGAGACAUGGUGGGCUG 20 5303
    BCL11A-4673 + CGGCGGCGGCGGGCGGACGA 20 5304
    BCL11A-4674 + CGGCGGCGGGCGGACGA 17 5305
    BCL11A-4675 + CGGGGAGGGGGAGGUGC 17 5306
    BCL11A-4676 + CGGGGCGGGGGGCUCCG 17 5307
    BCL11A-4677 + CGGGGGAGGGGCGGGCCGAG 20 5308
    BCL11A-4678 + CGUGGCCGGGAGAGAAGAAA 20 5309
    BCL11A-4679 CGUGUGUGGGGGGGAGC 17 5310
    BCL11A-4680 + CGUUUGCUUAAGUGCUG 17 5311
    BCL11A-4681 CUAGAAGCAAAAGCGAG 17 5312
    BCL11A-4682 CUCCCCGCACUGGCCAU 17 5313
    BCL11A-4683 CUCGGCCCGCCCCUCCCCCG 20 5314
    BCL11A-4684 + CUGAGCUGCAAGUUCAAGUG 20 5315
    BCL11A-4685 + CUGCGAACUUGAACGUC 17 5316
    BCL11A-4686 + CUGGACAUGAAAAAGAGACC 20 5317
    BCL11A-4687 + CUGUCUCAAAAGUGCAUACA 20 5318
    BCL11A-4688 + CUUGAACGUCAGGAGUC 17 5319
    BCL11A-4689 CUUGAACUUGCAGCUCA 17 5320
    BCL11A-4690 CUUGAACUUGCAGCUCAGGG 20 5321
    BCL11A-4691 + CUUGCGGCGAGACAUGG 17 5322
    BCL11A-4692 + GUUCACAUCGGGAGAGC 17 5323
    BCL11A-4693 + UAAUACAAAGAUGGCGC 17 5324
    BCL11A-4694 + UAAUUAUUAUUACUAUUAUU 20 5325
    BCL11A-4695 + UACACGGCAAUGGUUCCAGA 20 5326
    BCL11A-4696 + UAGAAAUAAUACAAAGA 17 5327
    BCL11A-4697 UAGAAGCAAAAGCGAGG 17 5328
    BCL11A-4698 UAGAGUCCGCGUGUGUG 17 5329
    BCL11A-4699 UAGAGUCCGCGUGUGUGGGG 20 5330
    BCL11A-4700 UCCCGGCCACGCCACCGCCG 20 5331
    BCL11A-4701 + UCCCGUUUGCUUAAGUGCUG 20 5332
    BCL11A-4702 + UCCCUGCGAACUUGAACGUC 20 5333
    BCL11A-4703 UCGAGGUAAAAGAGAUAAAG 20 5334
    BCL11A-4704 UCGGCCCGCCCCUCCCC 17 5335
    BCL11A-4705 UCGGCCCGCCCCUCCCCCGG 20 5336
    BCL11A-4706 + UCUCAAAAGUGCAUACA 17 5337
    BCL11A-4707 UCUCCUUCUUUCUAACC 17 5338
    BCL11A-4708 + UCUUUUACCUCGACUCU 17 5339
    BCL11A-4709 UGAACUUGCAGCUCAGG 17 5340
    BCL11A-4710 UGCGGCCACUGGUGAGCCCG 20 5341
    BCL11A-4711 + UGCGGGGAGGGGGAGGUGCG 20 5342
    BCL11A-4712 + UGCGGGGCGGGCGGCGG 17 5343
    BCL11A-4713 + UGCGGGGCGGGCGGCGGCGG 20 5344
    BCL11A-4714 UGCUUAAAAAAAAGCCAUGA 20 5345
    BCL11A-4715 + UGGCCAGUGCGGGGAGG 17 5346
    BCL11A-4716 + UGGCCAGUGCGGGGAGGGGG 20 5347
    BCL11A-4717 UGGCCAUUGGCUUGUCC 17 5348
    BCL11A-4718 + UGGCCGGGAGAGAAGAA 17 5349
    BCL11A-4719 + UGGGAGGAAAGGGUGGG 17 5350
    BCL11A-4720 + UGGGGCCGCGGGCUCACCAG 20 5351
    BCL11A-4721 + UGGUUCCAGAUGGGAUG 17 5352
    BCL11A-4722 UUAAAAAAAAGCCAUGA 17 5353
    BCL11A-4723 UUAGAGUCCGCGUGUGUGGG 20 5354
    BCL11A-4724 + UUAUUAUUACUAUUAUU 17 5355
    BCL11A-4725 UUAUUUCUAAUUUAUUU 17 5356
    BCL11A-4726 UUAUUUUGGAUGUCAAA 17 5357
    BCL11A-4727 + UUCACAUCGGGAGAGCC 17 5358
    BCL11A-4728 + UUCCCGUUUGCUUAAGUGCU 20 5359
    BCL11A-4729 + UUGAACGUCAGGAGUCUGGA 20 5360
    BCL11A-4730 UUGAACUUGCAGCUCAG 17 5361
    BCL11A-4731 + UUGCUUGCGGCGAGACAUGG 20 5362
    BCL11A-4732 + UUGUGGGAGAGCCGUCA 17 5363
    BCL11A-4733 UUUUAGAGUCCGCGUGUGUG 20 5364
  • Table 11A provides exemplary targeting domains for knocking down expression of the BCL11A gene according to first tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 11A
    1st Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4734 + GACGACGGCUCGGUUCACAU 20 6365
    BCL11A-4735 + GACGGCUCGGUUCACAU 17 6366
    BCL11A-4736 + GACGGCUCGGUUCACAUCGG 20 6367
    BCL11A-4737 + GACGUGACGUCCCUGCGAAC 20 6368
    BCL11A-4738 + GCGGACGUGACGUCCCU 17 6369
    BCL11A-4739 + GGACGACGGCUCGGUUCACA 20 6370
    BCL11A-4740 GGACGUCACGUCCGCAC 17 6371
    BCL11A-4741 + GGCUCGGUUCACAUCGG 17 6372
    BCL11A-4742 GGCUCUCCCGAUGUGAA 17 6373
    BCL11A-4743 + GGUUCACAUCGGGAGAG 17 6374
    BCL11A-4744 + GUCCCUGCGAACUUGAACGU 20 6375
    BCL11A-4745 + GUGACGUCCCUGCGAAC 17 6376
  • Table 11B provides exemplary targeting domains for knocking down expression of the BCL11A gene according to second tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 11B
    2nd Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4746 + ACGACGGCUCGGUUCACAUC 20 6377
    BCL11A-4747 ACGAGAGCGCGCAGGAC 17 6378
    BCL11A-4748 + ACGGCUCGGUUCACAUC 17 6379
    BCL11A-4749 + AGUGCGGACGUGACGUCCCU 20 6380
    BCL11A-4750 AUCACGAGAGCGCGCAGGAC 20 6381
    BCL11A-4751 CAGGGACGUCACGUCCGCAC 20 6382
    BCL11A-4752 + CAUCGGGAGAGCCGGGU 17 6383
    BCL11A-4753 CCCGGCUCUCCCGAUGUGAA 20 6384
    BCL11A-4754 + CCUGCGAACUUGAACGU 17 6385
    BCL11A-4755 + CGACGGCUCGGUUCACA 17 6386
    BCL11A-4756 + CUCGGUUCACAUCGGGAGAG 20 6387
    BCL11A-4757 + CUGCGAACUUGAACGUC 17 6388
    BCL11A-4758 + UCACAUCGGGAGAGCCGGGU 20 6389
    BCL11A-4759 + UCCCUGCGAACUUGAACGUC 20 6390
  • Table 11C provides exemplary targeting domains for knocking down expression of the BCL11A gene according to third tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 11C
    3rd Tier DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4760 GAAAAAACCCUCAUCCCAUC 20 6391
    BCL11A-4761 + GAAAGAAGGAGACUCCA 17 6392
    BCL11A-4762 + GAAAGGGGUGGCAGGGG 17 6393
    BCL11A-4763 + GAAAGGGGUGGCAGGGGUGG 20 6394
    BCL11A-4764 + GAAAUAAUACAAAGAUGGCG 20 6395
    BCL11A-4765 + GAACGUCAGGAGUCUGG 17 6396
    BCL11A-4766 + GAAGAAAGGGGUGGCAGGGG 20 6397
    BCL11A-4767 + GAAGAGAGAUAGAGGGA 17 6398
    BCL11A-4768 GAAGCAAAAGCGAGGGG 17 6399
    BCL11A-4769 + GAAGGGGAGGAGGGAAG 17 6400
    BCL11A-4770 + GACAAGCCAAUGGCCAGUGC 20 6401
    BCL11A-4771 + GACACACAAAACAUGGG 17 6402
    BCL11A-4772 + GACGCCAGACGCGGCCC 17 6403
    BCL11A-4773 + GACGCCAGACGCGGCCCCCG 20 6404
    BCL11A-4774 + GACGCGGCCCCCGGGGG 17 6405
    BCL11A-4775 GACUAGAAGCAAAAGCG 17 6406
    BCL11A-4776 GACUAGAAGCAAAAGCGAGG 20 6407
    BCL11A-4777 + GACUCUCGGAGGUUUUUCUC 20 6408
    BCL11A-4778 + GAGAAGAAAGGGGUGGC 17 6409
    BCL11A-4779 + GAGAAGAGAGAUAGAGG 17 6410
    BCL11A-4780 + GAGAAGGGGAGGAGGGA 17 6411
    BCL11A-4781 + GAGACAUGGUGGGCUGCGGG 20 6412
    BCL11A-4782 + GAGAGAAGAGAGAUAGA 17 6413
    BCL11A-4783 + GAGAGAAGGGGAGGAGGGAA 20 6414
    BCL11A-4784 + GAGAGAGAAGAGAGAUA 17 6415
    BCL11A-4785 + GAGAGAGAGAAGAGAGA 17 6416
    BCL11A-4786 + GAGAGAGAGAAGAGAGAUAG 20 6417
    BCL11A-4787 + GAGAGAGAGAGAGAGAG 17 6418
    BCL11A-4788 + GAGAGAUAGAGGGAGAGAGA 20 6419
    BCL11A-4789 + GAGAUAGAGGGAGAGAGAGA 20 6420
    BCL11A-4790 + GAGCAGGAGAGAAGGGG 17 6421
    BCL11A-4791 + GAGCAGGAGAGAAGGGGAGG 20 6422
    BCL11A-4792 + GAGCCGGGUUAGAAAGA 17 6423
    BCL11A-4793 + GAGCUGCAAGUUCAAGU 17 6424
    BCL11A-4794 + GAGGGAGAGAGAGAGAA 17 6425
    BCL11A-4795 + GAGGGGCGGGCCGAGGG 17 6426
    BCL11A-4796 + GAGGGGGAGGUGCGGGG 17 6427
    BCL11A-4797 + GAGGGGGCGCUGGGGCC 17 6428
    BCL11A-4798 GAGGUAAAAGAGAUAAA 17 6429
    BCL11A-4799 GAGUCCGCGUGUGUGGG 17 6430
    BCL11A-4800 GAGUCGAGGUAAAAGAGAUA 20 6431
    BCL11A-4801 + GAUAGAGGGAGAGAGAGAGA 20 6432
    BCL11A-4802 GAUGAAGAUAUUUUCUC 17 6433
    BCL11A-4803 GAUGUCAAAAGGCACUG 17 6434
    BCL11A-4804 GAUGUGUGUCCAUUGGU 17 6435
    BCL11A-4805 + GCAAUGGUUCCAGAUGGGAU 20 6436
    BCL11A-4806 GCACUUGAACUUGCAGCUCA 20 6437
    BCL11A-4807 GCAGGACUAGAAGCAAAAGC 20 6438
    BCL11A-4808 + GCAGGAGAGAAGGGGAG 17 6439
    BCL11A-4809 + GCAGGGAAGAUGAAUUG 17 6440
    BCL11A-4810 + GCAGGGAAGAUGAAUUGUGG 20 6441
    BCL11A-4811 + GCAGGGCGAGCAGGAGAGAA 20 6442
    BCL11A-4812 + GCAGGGGUGGGAGGAAAGGG 20 6443
    BCL11A-4813 GCAUUUUUAAAUUUUUC 17 6444
    BCL11A-4814 + GCCAAUGGCCAGUGCGGGGA 20 6445
    BCL11A-4815 + GCCAGACGCGGCCCCCG 17 6446
    BCL11A-4816 + GCCAGACGCGGCCCCCGGGG 20 6447
    BCL11A-4817 + GCCCCCGGGGGAGGGGCGGG 20 6448
    BCL11A-4818 + GCCGAGGGGAGGGGGCG 17 6449
    BCL11A-4819 + GCCGCGGCGGUGGCGUGGCC 20 6450
    BCL11A-4820 GCCGCGUCUGGCGUCCG 17 6451
    BCL11A-4821 + GCGAGACAUGGUGGGCU 17 6452
    BCL11A-4822 GCGCAGGACUAGAAGCAAAA 20 6453
    BCL11A-4823 + GCGCAGGGAAGAUGAAUUGU 20 6454
    BCL11A-4824 + GCGCCGCGGCGGUGGCGUGG 20 6455
    BCL11A-4825 + GCGGACGCCAGACGCGGCCC 20 6456
    BCL11A-4826 + GCGGCGAGACAUGGUGGGCU 20 6457
    BCL11A-4827 + GCGGCGGUGGCGUGGCC 17 6458
    BCL11A-4828 + GCGGGGAGGGGGAGGUG 17 6459
    BCL11A-4829 + GCGGGGCGGGGGGCUCC 17 6460
    BCL11A-4830 + GCGUGGCCGGGAGAGAAGAA 20 6461
    BCL11A-4831 GCGUGUGUGGGGGGGAG 17 6462
    BCL11A-4832 + GCUCACCAGUGGCCGCA 17 6463
    BCL11A-4833 GCUCGCUGCGGCCACUG 17 6464
    BCL11A-4834 + GCUGGACAUGAAAAAGAGAC 20 6465
    BCL11A-4835 + GCUUGCGGCGAGACAUG 17 6466
    BCL11A-4836 GGAAAAAACCCUCAUCCCAU 20 6467
    BCL11A-4837 + GGAAGGGGAAGCUCACACCA 20 6468
    BCL11A-4838 + GGACAAGCCAAUGGCCAGUG 20 6469
    BCL11A-4839 + GGACAUGAAAAAGAGAC 17 6470
    BCL11A-4840 + GGACGCCAGACGCGGCCCCC 20 6471
    BCL11A-4841 GGACUAGAAGCAAAAGC 17 6472
    BCL11A-4842 GGACUAGAAGCAAAAGCGAG 20 6473
    BCL11A-4843 + GGAGAGAAGAAAGGGGUGGC 20 6474
    BCL11A-4844 + GGAGAGAAGGGGAGGAGGGA 20 6475
    BCL11A-4845 + GGAGAGAGAGAGAAGAGAGA 20 6476
    BCL11A-4846 + GGAGAGCCGGGUUAGAAAGA 20 6477
    BCL11A-4847 + GGAGGGGCGGGCCGAGGGGA 20 6478
    BCL11A-4848 + GGAGGGGGAGGUGCGGG 17 6479
    BCL11A-4849 + GGAGGGGGAGGUGCGGGGCG 20 6480
    BCL11A-4850 + GGCAGGGCGAGCAGGAGAGA 20 6481
    BCL11A-4851 + GGCAGGGGUGGGAGGAAAGG 20 6482
    BCL11A-4852 GGCCGCGUCUGGCGUCC 17 6483
    BCL11A-4853 + GGCGAGCAGGAGAGAAG 17 6484
    BCL11A-4854 + GGCGAGCAGGAGAGAAGGGG 20 6485
    BCL11A-4855 + GGCGCAGGGAAGAUGAAUUG 20 6486
    BCL11A-4856 GGCGCUCGCUGCGGCCACUG 20 6487
    BCL11A-4857 + GGCGGCGGCGGCGGCGG 17 6488
    BCL11A-4858 + GGCGGCGGCGGCGGCGGCGG 20 6489
    BCL11A-4859 + GGCGGUGGCGUGGCCGG 17 6490
    BCL11A-4860 + GGCGUGGCCGGGAGAGAAGA 20 6491
    BCL11A-4861 + GGGAAGAUGAAUUGUGG 17 6492
    BCL11A-4862 + GGGAGAGAAGAAAGGGGUGG 20 6493
    BCL11A-4863 + GGGAGAGCCGGGUUAGA 17 6494
    BCL11A-4864 + GGGAGAGCCGGGUUAGAAAG 20 6495
    BCL11A-4865 + GGGAGGAAAGGGUGGGG 17 6496
    BCL11A-4866 + GGGAGGGGCGGGCCGAG 17 6497
    BCL11A-4867 + GGGAGGGGCGGGCCGAGGGG 20 6498
    BCL11A-4868 + GGGAGGGGGAGGUGCGGGGC 20 6499
    BCL11A-4869 + GGGCAGGGCGAGCAGGA 17 6500
    BCL11A-4870 + GGGCAGGGCGAGCAGGAGAG 20 6501
    BCL11A-4871 + GGGCCGAGGGGAGGGGGCGC 20 6502
    BCL11A-4872 + GGGCGAGCAGGAGAGAA 17 6503
    BCL11A-4873 + GGGCGAGCAGGAGAGAAGGG 20 6504
    BCL11A-4874 + GGGGAGGGGCGGGCCGA 17 6505
    BCL11A-4875 + GGGGAGGGGCGGGCCGAGGG 20 6506
    BCL11A-4876 + GGGGAGGGGGAGGUGCGGGG 20 6507
    BCL11A-4877 + GGGGAGGGGGCGCUGGGGCC 20 6508
    BCL11A-4878 GGGGCCGCGUCUGGCGUCCG 20 6509
    BCL11A-4879 + GGGGCGGGCCGAGGGGA 17 6510
    BCL11A-4880 + GGGGGAGGGGCGGGCCG 17 6511
    BCL11A-4881 + GGGGGAGGUGCGGGGCG 17 6512
    BCL11A-4882 GGGGGCCGCGUCUGGCGUCC 20 6513
    BCL11A-4883 + GGGGUGGCAGGGGUGGG 17 6514
    BCL11A-4884 + GGGGUGGGAGGAAAGGG 17 6515
    BCL11A-4885 + GGGGUGGGAGGAAAGGGUGG 20 6516
    BCL11A-4886 + GGGUGGCAGGGGUGGGAGGA 20 6517
    BCL11A-4887 + GGGUGGGAGGAAAGGGU 17 6518
    BCL11A-4888 + GGGUGGGAGGAAAGGGUGGG 20 6519
    BCL11A-4889 GGUAAAAGAGAUAAAGG 17 6520
    BCL11A-4890 + GGUGCGGGGCGGGGGGCUCC 20 6521
    BCL11A-4891 + GGUGGGAGGAAAGGGUG 17 6522
    BCL11A-4892 + GGUGGGAGGAAAGGGUGGGG 20 6523
    BCL11A-4893 + GGUUAGAAAGAAGGAGACUC 20 6524
    BCL11A-4894 + GGUUUGCCUUGCUUGCG 17 6525
    BCL11A-4895 GUCGAGGUAAAAGAGAUAAA 20 6526
    BCL11A-4896 + GUGGCCGGGAGAGAAGA 17 6527
    BCL11A-4897 + GUGGGAGGAAAGGGUGG 17 6528
  • Table 11D provides exemplary targeting domains for knocking down expression of the BCL11A gene according to forth tier parameters. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 11D
    4th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-4898 + AAAAAAAAAAAAAAAAA 17 6529
    BCL11A-4899 + AAAAAAAAAAAAAAAAAAAA 20 6530
    BCL11A-4900 + AAAAAAAAAAAAAAAAAAAG 20 6531
    BCL11A-4901 + AAAAAAAAAAAAAAAAAAGA 20 6532
    BCL11A-4902 + AAAAAAAAAAAAAAAAG 17 6533
    BCL11A-4903 + AAAAAAAAAAAAAAAAGAGG 20 6534
    BCL11A-4904 + AAAAAAAAAAAAAAAGA 17 6535
    BCL11A-4905 + AAAAAAAAAAAAAAGAGGGA 20 6536
    BCL11A-4906 + AAAAAAAAAAAAAGAGG 17 6537
    BCL11A-4907 + AAAAAAAAAAAAGAGGGAGA 20 6538
    BCL11A-4908 + AAAAAAAAAAAGAGGGA 17 6539
    BCL11A-4909 + AAAAAAAAAAGAGGGAGAGA 20 6540
    BCL11A-4910 + AAAAAAAAAGAGGGAGA 17 6541
    BCL11A-4911 + AAAAAAAAGAGGGAGAGAGA 20 6542
    BCL11A-4912 + AAAAAAAGAGGGAGAGA 17 6543
    BCL11A-4913 + AAAAAAUGGCAAAAGCCCCC 20 6544
    BCL11A-4914 - AAAAACCCUCAUCCCAU 17 6545
    BCL11A-4915 + AAAAAGAGGGAGAGAGA 17 6546
    BCL11A-4916 + AAAAAGAGGGAGAGAGAGAG 20 6547
    BCL11A-4917 + AAAACAUGGGCAGGGCGAGC 20 6548
    BCL11A-4918 - AAAACCCUCAUCCCAUC 17 6549
    BCL11A-4919 - AAAAGCGAGGGGGAGAG 17 6550
    BCL11A-4920 - AAACCCCAGCACUUAAGCAA 20 6551
    BCL11A-4921 + AAAGAGGGAGAGAGAGAGAA 20 6552
    BCL11A-4922 + AAAGGGGUGGCAGGGGU 17 6553
    BCL11A-4923 + AAAGGGGUGGCAGGGGUGGG 20 6554
    BCL11A-4924 + AAAUAAUACAAAGAUGGCGC 20 6555
    BCL11A-4925 + AAAUGGCAAAAGCCCCC 17 6556
    BCL11A-4926 + AACAUGGGCAGGGCGAG 17 6557
    BCL11A-4927 + AACAUGGGCAGGGCGAGCAG 20 6558
    BCL11A-4928 - AACCCCAGCACUUAAGCAAA 20 6559
    BCL11A-4929 - AACCCGGCUCUCCCGAU 17 6560
    BCL11A-4930 + AAGAAAGGGGUGGCAGGGGU 20 6561
    BCL11A-4931 + AAGAGAGAUAGAGGGAGAGA 20 6562
    BCL11A-4932 + AAGAGGGAGAGAGAGAG 17 6563
    BCL11A-4933 + AAGAUGGCGCAGGGAAG 17 6564
    BCL11A-4934 - AAGCAAAAGCGAGGGGGAGA 20 6565
    BCL11A-4935 + AAGCCAAUGGCCAGUGC 17 6566
    BCL11A-4936 + AAGCCAAUGGCCAGUGCGGG 20 6567
    BCL11A-4937 - AAUAAUAAUUAUUAAUAAUC 20 6568
    BCL11A-4938 + AAUAAUACAAAGAUGGCGCA 20 6569
    BCL11A-4939 - AAUAAUUAUUAAUAAUC 17 6570
    BCL11A-4940 + AAUAAUUAUUAUUACUAUUA 20 6571
    BCL11A-4941 + AAUACAAAGAUGGCGCA 17 6572
    BCL11A-4942 + AAUGGCCAGUGCGGGGA 17 6573
    BCL11A-4943 + AAUUAUUAUUACUAUUA 17 6574
    BCL11A-4944 + AAUUCCCGUUUGCUUAAGUG 20 6575
    BCL11A-4945 + ACAAAGAUGGCGCAGGGAAG 20 6576
    BCL11A-4946 + ACAAGCCAAUGGCCAGU 17 6577
    BCL11A-4947 + ACAAGCCAAUGGCCAGUGCG 20 6578
    BCL11A-4948 + ACACACAAAACAUGGGCAGG 20 6579
    BCL11A-4949 + ACACACAUCAGGGGCUGGAC 20 6580
    BCL11A-4950 + ACAGAGACACACAAAAC 17 6581
    BCL11A-4951 + ACAUGGGCAGGGCGAGC 17 6582
    BCL11A-4952 + ACAUGGUGGGCUGCGGG 17 6583
    BCL11A-4953 + ACCAAUGGACACACAUC 17 6584
    BCL11A-4954 - ACCCCAGCACUUAAGCAAAC 20 6585
    BCL11A-4955 - ACCUCCGAGAGUCGAGGUAA 20 6586
    BCL11A-4956 - ACGAGAAAAACCUCCGAGAG 20 6587
    BCL11A-4957 + ACGCCAGACGCGGCCCC 17 6588
    BCL11A-4958 + ACGCCAGACGCGGCCCCCGG 20 6589
    BCL11A-4959 + ACGCGGCCCCCGGGGGAGGG 20 6590
    BCL11A-4960 + ACGGCAAUGGUUCCAGA 17 6591
    BCL11A-4961 + ACGUCAGGAGUCUGGAUGGA 20 6592
    BCL11A-4962 - ACUAGAAGCAAAAGCGA 17 6593
    BCL11A-4963 + ACUAUUAUUGGGUUACUUAC 20 6594
    BCL11A-4964 - ACUCCUGACGUUCAAGUUCG 20 6595
    BCL11A-4965 - ACUGAUGAAGAUAUUUUCUC 20 6596
    BCL11A-4966 + ACUUGAACGUCAGGAGU 17 6597
    BCL11A-4967 - ACUUGAACUUGCAGCUC 17 6598
    BCL11A-4968 - AGAAAAACCUCCGAGAG 17 6599
    BCL11A-4969 + AGAAAGGGGUGGCAGGG 17 6600
    BCL11A-4970 + AGAAGAAAGGGGUGGCAGGG 20 6601
    BCL11A-4971 + AGAAGAGAGAUAGAGGGAGA 20 6602
    BCL11A-4972 - AGAAGCAAAAGCGAGGGGGA 20 6603
    BCL11A-4973 + AGAAGGGGAGGAGGGAA 17 6604
    BCL11A-4974 + AGACGCGGCCCCCGGGG 17 6605
    BCL11A-4975 + AGAGAAGAAAGGGGUGG 17 6606
    BCL11A-4976 + AGAGAAGAGAGAUAGAGGGA 20 6607
    BCL11A-4977 + AGAGAAGGGGAGGAGGG 17 6608
    BCL11A-4978 + AGAGAAGGGGAGGAGGGAAG 20 6609
    BCL11A-4979 + AGAGACACACAAAACAUGGG 20 6610
    BCL11A-4980 + AGAGAGAAGAGAGAUAG 17 6611
    BCL11A-4981 + AGAGAGAAGAGAGAUAGAGG 20 6612
    BCL11A-4982 + AGAGAGAGAAGAGAGAUAGA 20 6613
    BCL11A-4983 + AGAGAGAGAGAAGAGAGAUA 20 6614
    BCL11A-4984 + AGAGAGAUAGAGGGAGA 17 6615
    BCL11A-4985 + AGAGAUAGAGGGAGAGA 17 6616
    BCL11A-4986 + AGAGCCGGGUUAGAAAG 17 6617
    BCL11A-4987 + AGAGGGAGAGAGAGAGA 17 6618
    BCL11A-4988 - AGAGUCCGCGUGUGUGG 17 6619
    BCL11A-4989 + AGAUAGAGGGAGAGAGA 17 6620
    BCL11A-4990 - AGCAAAAGCGAGGGGGA 17 6621
    BCL11A-4991 - AGCAAAAGCGAGGGGGAGAG 20 6622
    BCL11A-4992 + AGCAGGAGAGAAGGGGAGGA 20 6623
    BCL11A-4993 + AGCCAAUGGCCAGUGCG 17 6624
    BCL11A-4994 + AGCCAAUGGCCAGUGCGGGG 20 6625
    BCL11A-4995 + AGGACAAGCCAAUGGCCAGU 20 6626
    BCL11A-4996 - AGGACUAGAAGCAAAAGCGA 20 6627
    BCL11A-4997 + AGGAGAGAAGGGGAGGA 17 6628
    BCL11A-4998 + AGGAGAGAAGGGGAGGAGGG 20 6629
    BCL11A-4999 + AGGGAGAGAGAGAGAGAGAG 20 6630
    BCL11A-5000 + AGGGCGAGCAGGAGAGA 17 6631
    BCL11A-5001 + AGGGGAAGCUCACACCA 17 6632
    BCL11A-5002 + AGGGGCGGGCCGAGGGG 17 6633
    BCL11A-5003 + AGGGGCUGGACAUGAAA 17 6634
    BCL11A-5004 + AGGGGGAGGUGCGGGGC 17 6635
    BCL11A-5005 + AGGGGUGGCAGGGGUGG 17 6636
    BCL11A-5006 + AGGGGUGGGAGGAAAGG 17 6637
    BCL11A-5007 + AGGGGUGGGAGGAAAGGGUG 20 6638
    BCL11A-5008 - AGGUAAAAGAGAUAAAG 17 6639
    BCL11A-5009 - AGUCCGCGUGUGUGGGG 17 6640
    BCL11A-5010 - AGUCGAGGUAAAAGAGAUAA 20 6641
    BCL11A-5011 + AGUGCGGGGAGGGGGAGGUG 20 6642
    BCL11A-5012 + AUAAUACAAAGAUGGCG 17 6643
    BCL11A-5013 - AUAAUCACGAGAGCGCG 17 6644
    BCL11A-5014 + AUACACGGCAAUGGUUCCAG 20 6645
    BCL11A-5015 + AUAGAGGGAGAGAGAGA 17 6646
    BCL11A-5016 + AUCAGGGGCUGGACAUGAAA 20 6647
    BCL11A-5017 + AUCGGGAGAGCCGGGUUAGA 20 6648
    BCL11A-5018 + AUCUCUUUUACCUCGACUCU 20 6649
    BCL11A-5019 + AUGGCCAGUGCGGGGAG 17 6650
    BCL11A-5020 + AUGGGCAGGGCGAGCAG 17 6651
    BCL11A-5021 + AUGGUUCCAGAUGGGAU 17 6652
    BCL11A-5022 + AUUAUUGGGUUACUUAC 17 6653
    BCL11A-5023 - AUUAUUUCUAAUUUAUU 17 6654
    BCL11A-5024 + AUUCCCGUUUGCUUAAGUGC 20 6655
    BCL11A-5025 - AUUUUAGAGUCCGCGUGUGU 20 6656
    BCL11A-5026 - AUUUUUAAAUUUUUCAC 17 6657
    BCL11A-5027 - AUUUUUCACGAGAAAAACCU 20 6658
    BCL11A-5028 + CAAAACAUGGGCAGGGCGAG 20 6659
    BCL11A-5029 - CAAAAGCGAGGGGGAGA 17 6660
    BCL11A-5030 + CAAGCCAAUGGCCAGUG 17 6661
    BCL11A-5031 + CAAUGGACACACAUCAGGGG 20 6662
    BCL11A-5032 + CAAUGGCCAGUGCGGGG 17 6663
    BCL11A-5033 + CAAUGGCCAGUGCGGGGAGG 20 6664
    BCL11A-5034 + CAAUGGUUCCAGAUGGG 17 6665
    BCL11A-5035 + CACAAAACAUGGGCAGG 17 6666
    BCL11A-5036 + CACACCAAUGGACACACAUC 20 6667
    BCL11A-5037 + CACACGCGGACUCUAAA 17 6668
    BCL11A-5038 + CACAUCAGGGGCUGGAC 17 6669
    BCL11A-5039 + CACCAAUGGACACACAU 17 6670
    BCL11A-5040 + CACGGCAAUGGUUCCAG 17 6671
    BCL11A-5041 - CACUGAUGAAGAUAUUUUCU 20 6672
    BCL11A-5042 - CACUUGAACUUGCAGCU 17 6673
    BCL11A-5043 - CACUUGAACUUGCAGCUCAG 20 6674
    BCL11A-5044 - CAGGACUAGAAGCAAAA 17 6675
    BCL11A-5045 - CAGGACUAGAAGCAAAAGCG 20 6676
    BCL11A-5046 + CAGGAGAGAAGGGGAGG 17 6677
    BCL11A-5047 + CAGGGAAGAUGAAUUGU 17 6678
    BCL11A-5048 + CAGGGCGAGCAGGAGAG 17 6679
    BCL11A-5049 + CAGGGCGAGCAGGAGAGAAG 20 6680
    BCL11A-5050 + CAGGGGUGGGAGGAAAGGGU 20 6681
    BCL11A-5051 + CAGUGCGGGGAGGGGGAGGU 20 6682
    BCL11A-5052 - CAUGCAUUUUUAAAUUUUUC 20 6683
    BCL11A-5053 + CAUGGGCAGGGCGAGCAGGA 20 6684
    BCL11A-5054 - CAUUUUAGAGUCCGCGUGUG 20 6685
    BCL11A-5055 + CCAAUGGCCAGUGCGGG 17 6686
    BCL11A-5056 + CCAAUGGCCAGUGCGGGGAG 20 6687
    BCL11A-5057 + CCACACACGCGGACUCUAAA 20 6688
    BCL11A-5058 + CCAGACGCGGCCCCCGG 17 6689
    BCL11A-5059 + CCAGACGCGGCCCCCGGGGG 20 6690
    BCL11A-5060 - CCAGCACUUAAGCAAAC 17 6691
    BCL11A-5061 - CCAUUGCCGUGUAUGCACUU 20 6692
    BCL11A-5062 - CCCAGCACUUAAGCAAA 17 6693
    BCL11A-5063 - CCCCAGCACUUAAGCAA 17 6694
    BCL11A-5064 + CCCCGGGGGAGGGGCGGGCC 20 6695
    BCL11A-5065 - CCCCUCGGCCCGCCCCUCCC 20 6696
    BCL11A-5066 + CCCGGGGGAGGGGCGGG 17 6697
    BCL11A-5067 + CCCGGGGGAGGGGCGGGCCG 20 6698
    BCL11A-5068 + CCCGUUUGCUUAAGUGC 17 6699
    BCL11A-5069 - CCCUCGGCCCGCCCCUCCCC 20 6700
    BCL11A-5070 + CCCUGCUCCCCCCCACACAC 20 6701
    BCL11A-5071 + CCGAGGGGAGGGGGCGC 17 6702
    BCL11A-5072 - CCGCACUUGAACUUGCAGCU 20 6703
    BCL11A-5073 + CCGCGGCGGUGGCGUGG 17 6704
    BCL11A-5074 + CCGGGGGAGGGGCGGGCCGA 20 6705
    BCL11A-5075 - CCUCGGCCCGCCCCUCCCCC 20 6706
    BCL11A-5076 - CCUGACGUUCAAGUUCG 17 6707
    BCL11A-5077 + CCUGAGCUGCAAGUUCAAGU 20 6708
    BCL11A-5078 - CCUGAUGUGUGUCCAUUGGU 20 6709
    BCL11A-5079 + CGAACUUGAACGUCAGGAGU 20 6710
    BCL11A-5080 + CGAGACAUGGUGGGCUG 17 6711
    BCL11A-5081 + CGAGCAGGAGAGAAGGG 17 6712
    BCL11A-5082 + CGAGCAGGAGAGAAGGGGAG 20 6713
    BCL11A-5083 - CGAGGUAAAAGAGAUAA 17 6714
    BCL11A-5084 - CGAGGUAAAAGAGAUAAAGG 20 6715
    BCL11A-5085 - CGCACUUGAACUUGCAGCUC 20 6716
    BCL11A-5086 + CGCAGGGAAGAUGAAUU 17 6717
    BCL11A-5087 + CGCCAGACGCGGCCCCC 17 6718
    BCL11A-5088 + CGCCGCGGCGGUGGCGUGGC 20 6719
    BCL11A-5089 + CGCGGCGGUGGCGUGGC 17 6720
    BCL11A-5090 + CGCGGCGGUGGCGUGGCCGG 20 6721
    BCL11A-5091 + CGGACGCCAGACGCGGCCCC 20 6722
    BCL11A-5092 + CGGCAAUGGUUCCAGAUGGG 20 6723
    BCL11A-5093 + CGGCCCCCGGGGGAGGG 17 6724
    BCL11A-5094 - CGGCCCGCCCCUCCCCC 17 6725
    BCL11A-5095 + CGGCGAGACAUGGUGGGCUG 20 6726
    BCL11A-5096 + CGGCGGCGGCGGCGGCG 17 6727
    BCL11A-5097 + CGGCGGCGGCGGCGGCGGCG 20 6728
    BCL11A-5098 + CGGCGGUGGCGUGGCCGGGA 20 6729
    BCL11A-5099 + CGGGCCGAGGGGAGGGGGCG 20 6730
    BCL11A-5100 + CGGGCUCACCAGUGGCCGCA 20 6731
    BCL11A-5101 + CGGGGAGGGGGAGGUGCGGG 20 6732
    BCL11A-5102 + CGGGGGAGGGGCGGGCC 17 6733
    BCL11A-5103 + CGGGGGAGGGGCGGGCCGAG 20 6734
    BCL11A-5104 + CGGUGGCGUGGCCGGGA 17 6735
    BCL11A-5105 + CGGUGGCGUGGCCGGGAGAG 20 6736
    BCL11A-5106 - CUAGAAGCAAAAGCGAG 17 6737
    BCL11A-5107 - CUAGAAGCAAAAGCGAGGGG 20 6738
    BCL11A-5108 - CUCCUGACGUUCAAGUUCGC 20 6739
    BCL11A-5109 - CUCGGCCCGCCCCUCCC 17 6740
    BCL11A-5110 + CUCUUUUACCUCGACUC 17 6741
    BCL11A-5111 - CUGACGUUCAAGUUCGC 17 6742
    BCL11A-5112 + CUUGAACGUCAGGAGUCUGG 20 6743
    BCL11A-5113 - CUUGAACUUGCAGCUCA 17 6744
    BCL11A-5114 + CUUGCUUGCGGCGAGACAUG 20 6745
    BCL11A-5115 - UAAUAAUUAUUAAUAAUCAC 20 6746
    BCL11A-5116 + UAAUACAAAGAUGGCGC 17 6747
    BCL11A-5117 - UAAUUAUUAAUAAUCAC 17 6748
    BCL11A-5118 + UACACGGCAAUGGUUCCAGA 20 6749
    BCL11A-5119 + UAGAAAGAAGGAGACUC 17 6750
    BCL11A-5120 - UAGAAGCAAAAGCGAGG 17 6751
    BCL11A-5121 - UAGAGUCCGCGUGUGUG 17 6752
    BCL11A-5122 - UAGAGUCCGCGUGUGUGGGG 20 6753
    BCL11A-5123 + UAUCUCUUUUACCUCGACUC 20 6754
    BCL11A-5124 + UAUUAUUGGGUUACUUACGC 20 6755
    BCL11A-5125 + UAUUGGGUUACUUACGC 17 6756
    BCL11A-5126 + UCACACCAAUGGACACACAU 20 6757
    BCL11A-5127 - UCACGAGAAAAACCUCC 17 6758
    BCL11A-5128 + UCAGGAGUCUGGAUGGA 17 6759
    BCL11A-5129 - UCAUUUUAGAGUCCGCGUGU 20 6760
    BCL11A-5130 + UCCCGUUUGCUUAAGUG 17 6761
    BCL11A-5131 - UCCGAGAGUCGAGGUAA 17 6762
    BCL11A-5132 - UCCGCGUGUGUGGGGGGGAG 20 6763
    BCL11A-5133 - UCGAGGUAAAAGAGAUA 17 6764
    BCL11A-5134 - UCGAGGUAAAAGAGAUAAAG 20 6765
    BCL11A-5135 - UCGGCCCGCCCCUCCCC 17 6766
    BCL11A-5136 - UCUAACCCGGCUCUCCCGAU 20 6767
    BCL11A-5137 + UCUCGGAGGUUUUUCUC 17 6768
    BCL11A-5138 + UCUUUUACCUCGACUCU 17 6769
    BCL11A-5139 + UGACAUCCAAAAUAAAU 17 6770
    BCL11A-5140 - UGAUGAAGAUAUUUUCU 17 6771
    BCL11A-5141 - UGCAUUUUUAAAUUUUUCAC 20 6772
    BCL11A-5142 + UGCGGGGAGGGGGAGGU 17 6773
    BCL11A-5143 + UGCUCCCCCCCACACAC 17 6774
    BCL11A-5144 + UGGACACACAUCAGGGG 17 6775
    BCL11A-5145 + UGGACAGAGACACACAAAAC 20 6776
    BCL11A-5146 + UGGCAGGGGUGGGAGGA 17 6777
    BCL11A-5147 + UGGCCAGUGCGGGGAGG 17 6778
    BCL11A-5148 + UGGCCGGGAGAGAAGAA 17 6779
    BCL11A-5149 + UGGCGCAGGGAAGAUGAAUU 20 6780
    BCL11A-5150 + UGGCGUGGCCGGGAGAG 17 6781
    BCL11A-5151 + UGGGAGGAAAGGGUGGG 17 6782
    BCL11A-5152 + UGGGGUUUGCCUUGCUUGCG 20 6783
    BCL11A-5153 - UGUAUUAUUUCUAAUUUAUU 20 6784
    BCL11A-5154 - UUAAUAAUCACGAGAGCGCG 20 6785
    BCL11A-5155 + UUAGAAAGAAGGAGACUCCA 20 6786
    BCL11A-5156 - UUAGAGUCCGCGUGUGU 17 6787
    BCL11A-5157 - UUAGAGUCCGCGUGUGUGGG 20 6788
    BCL11A-5158 - UUGAACUUGCAGCUCAG 17 6789
    BCL11A-5159 - UUGCCGUGUAUGCACUU 17 6790
    BCL11A-5160 - UUGGAUGUCAAAAGGCACUG 20 6791
    BCL11A-5161 - UUUAGAGUCCGCGUGUG 17 6792
    BCL11A-5162 - UUUAGAGUCCGCGUGUGUGG 20 6793
    BCL11A-5163 - UUUCACGAGAAAAACCU 17 6794
    BCL11A-5164 - UUUUAGAGUCCGCGUGU 17 6795
    BCL11A-5165 - UUUUAGAGUCCGCGUGUGUG 20 6796
    BCL11A-5166 - UUUUCACGAGAAAAACCUCC 20 6797
    BCL11A-5167 + UUUUGACAUCCAAAAUAAAU 20 6798
  • Table 12 provides exemplary targeting domains for knocking down expression of the BCL11A gene. The targeting domains bind between 500 bp upstream and 500 bp downstream of transcription start site. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidismeningitidis eiCas9 molecule to cause a steric block at the target region, e.g., between 500 bp upstream and 500 bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a N. meningitidismeningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
  • TABLE 12
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    BCL11A-5168 + GCUUCUAGUCCUGCGCGCUC 20 6799
    BCL11A-5169 + ACACACGCGGACUCUAAAAU 20 6800
    BCL11A-5170 + UCUAGUCCUGCGCGCUC 17 6801
    BCL11A-5171 + CACGCGGACUCUAAAAU 17 6802
  • Table 13A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, good orthogonality and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary gRNA pairs are: HBB-9 and HBB-11, HBB-9 and HBB-39, HBB-20 and HBB-11 and HBB-20 and HBB-39.
  • TABLE 13A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-1 - GGUGCACCUGACUCCUG 17 6803
    HBB-2 + GUAACGGCAGACUUCUCCAC 20 6804
  • Table 13B provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • TABLE 13B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-3 + ACGGCAGACUUCUCCAC 17 6805
    HBB-4 + ACUUCUCCACAGGAGUC 17 6806
    HBB-5 + AGGAGUCAGGUGCACCA 17 6807
    HBB-6 - CAUGGUGCACCUGACUCCUG 20 6808
    HBB-7 + CACAGGAGUCAGGUGCACCA 20 6809
    HBB-8 + CAGACUUCUCCACAGGAGUC 20 6810
  • Table 13C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the third tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • TABLE 13C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-9 - GAAGUUGGUGGUGAGGCCCU 20 6811
    HBB-10 - GCAACCUCAAACAGACACCA 20 6812
    HBB-11 + GCCCCACAGGGCAGUAA 17 6813
    HBB-12 - GCCGUUACUGCCCUGUG 17 6814
    HBB-13 - GGAUGAAGUUGGUGGUG 17 6815
    HBB-14 - GUCUGCCGUUACUGCCCUGU 20 6816
    HBB-15 - GUGAACGUGGAUGAAGU 17 6817
    HBB-16 - GUGAACGUGGAUGAAGUUGG 20 6818
    HBB-17 - GUGGGGCAAGGUGAACG 17 6819
    HBB-18 - GUGGUGAGGCCCUGGGC 17 6820
    HBB-19 + GUUCACCUUGCCCCACA 17 6821
    HBB-20 - GUUGGUGGUGAGGCCCU 17 6822
  • Table 13D provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the fourth tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • TABLE 13D
    4th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-21 - AACGUGGAUGAAGUUGG 17 6823
    HBB-22 + AAGCAAAUGUAAGCAAUAGA 20 6824
    HBB-23 - AAGGUGAACGUGGAUGAAGU 20 6825
    HBB-24 + ACCAUGGUGUCUGUUUG 17 6826
    HBB-25 - ACCUCAAACAGACACCA 17 6827
    HBB-26 + ACCUUGAUACCAACCUGCCC 20 6828
    HBB-27 - AGUCUGCCGUUACUGCCCUG 20 6829
    HBB-28 - AGUUGGUGGUGAGGCCC 17 6830
    HBB-29 + CAAAUGUAAGCAAUAGA 17 6831
    HBB-30 + CACGUUCACCUUGCCCCACA 20 6832
    HBB-31 + CCACGUUCACCUUGCCCCAC 20 6833
    HBB-32 - CCCUGGGCAGGUUGGUAUCA 20 6834
    HBB-33 - CCUGUGGGGCAAGGUGAACG 20 6835
    HBB-34 + CCUUGAUACCAACCUGCCCA 20 6836
    HBB-35 - CGUGGAUGAAGUUGGUGGUG 20 6837
    HBB-36 - CGUUACUGCCCUGUGGGGCA 20 6838
    HBB-37 + CGUUCACCUUGCCCCAC 17 6839
    HBB-38 - CUGCCGUUACUGCCCUG 17 6840
    HBB-39 + CUUGCCCCACAGGGCAGUAA 20 6841
    HBB-40 - UACUGCCCUGUGGGGCA 17 6842
    HBB-41 - UAUCAAGGUUACAAGAC 17 6843
    HBB-42 - UCUGCCGUUACUGCCCUGUG 20 6844
    HBB-43 - UGAAGUUGGUGGUGAGGCCC 20 6845
    HBB-44 - UGAGGCCCUGGGCAGGU 17 6846
    HBB-45 + UGAUACCAACCUGCCCA 17 6847
    HBB-46 + UGCACCAUGGUGUCUGUUUG 20 6848
    HBB-47 - UGCCGUUACUGCCCUGU 17 6849
    HBB-48 - UGGGCAGGUUGGUAUCA 17 6850
    HBB-49 - UGGUAUCAAGGUUACAAGAC 20 6851
    HBB-50 - UGGUGAGGCCCUGGGCAGGU 20 6852
    HBB-51 + UUGAUACCAACCUGCCC 17 6853
    HBB-52 - UUGGUGGUGAGGCCCUGGGC 20 6854
  • Table 14A provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the first tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, good orthogonality and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary gRNA pairs are: HBB-9 and HBB-11, HBB-9 and HBB-39, HBB-20 and HBB-11 and HBB-20 and HBB-39.
  • TABLE 14A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-53 + GUAACGGCAGACUUCUCCAC 20 6855
  • Table 14B provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the second tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • TABLE 14B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-54 - CCCUGUGGGGCAAGGUGGAC 20 6856
  • Table 14C provides exemplary targeting domains for the E6V target site in the HBB gene selected according to the fifth tier parameters. The targeting domains bind within 100 bp upstream and 100 bp downstream of the target position and PAM is NNGRRV. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp.
  • TABLE 14C
    5th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO
    HBB-55 - AGUCUGCCGUUACUGCCCUG 20 6857
    HBB-56 - AAGUCUGCCGUUACUGCCCU 20 6858
    HBB-57 + AACCUUGAUACCAACCUGCC 20 6859
    HBB-58 + UCCACGUUCACCUUGCCCCA 20 6860
    HBB-59 + GCUAGUGAACACAGUUGUGU 20 6861
    HBB-60 - CCAUGGUGCACCUGACUCCU 20 6862
    HBB-61 - CAUGGUGCACCUGACUCCUG 20 6863
    HBB-62 + AGGUGCACCAUGGUGUCUGU 20 6864
    HBB-63 - UGGUGCACCUGACUCCUGUG 20 6865
    HBB-64 - GAACGUGGAUGAAGUUGGUG 20 6866
    HBB-65 - UUACUGCCCUGUGGGGCAAG 20 6867
    HBB-66 + GUGUCUGUUUGAGGUUGCUA 20 6868
    HBB-67 - GUGGGGCAAGGUGAACGUGG 20 6869
    HBB-68 - AUGAAGUUGGUGGUGAGGCC 20 6870
    HBB-69 + AGUAACGGCAGACUUCUCCA 20 6871
  • Table 15A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 15A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-5318 + UCAUCUCGAUUGGUGAA 17 6872
    BCL11A-5319 + UUGCUUGCGGCGAGACA 17 6873
    BCL11A-5320 - AUGUCUCGCCGCAAGCA 17 6874
    BCL11A-5321 - GCAGAAUAUGCCCCGCA 17 6875
    BCL11A-5322 - CCGUUGGGAGCUCCAGA 17 6876
    BCL11A-5323 + CUCCAUGUGCAGAACGA 17 6877
    BCL11A-5324 + UCGAUUGGUGAAGGGGA 17 6878
    BCL11A-5325 + CAUCCUCUGGCGUGACC 17 6879
    BCL11A-5326 - GCUCUAAUCCCCACGCC 17 6880
    BCL11A-5327 + CCCGUUUGCUUAAGUGC 17 6881
    BCL11A-5328 + AAACAAUCGUCAUCCUC 17 6882
    BCL11A-5329 + CCCAACGGGCCGUGGUC 17 6883
    BCL11A-5330 + CAUCUCGAUUGGUGAAG 17 6884
    BCL11A-5331 - CAUCCAGGUCACGCCAG 17 6885
    BCL11A-5332 - UUAUCAACGUCAUCUAG 17 6886
    BCL11A-5333 + GAGCUCCCAACGGGCCG 17 6887
    BCL11A-5334 + UGCACUCAUCCCAGGCG 17 6888
    BCL11A-5335 + AGACAUGGUGGGCUGCG 17 6889
    BCL11A-5336 + CGUUUGCUUAAGUGCUG 17 6890
    BCL11A-5337 + GCUUUUUUCAUCUCGAU 17 6891
    BCL11A-5338 + CCGUUUGCUUAAGUGCU 17 6892
    BCL11A-5339 - UCCAAUCCCGUGGAGGU 17 6893
    BCL11A-5340 + UUGCGGCGAGACAUGGU 17 6894
    BCL11A-5341 - AUGACCUCCUCACCUGU 17 6895
    BCL11A-5342 - UUAUUUUUAUCGAGCACAAA 20 6896
    BCL11A-5343 + UCCCCUUCUGGAGCUCCCAA 20 6897
    BCL11A-5344 + UUUUCAUCUCGAUUGGUGAA 20 6898
    BCL11A-5345 + GCCUUGCUUGCGGCGAGACA 20 6899
    BCL11A-5346 - ACCAUGUCUCGCCGCAAGCA 20 6900
    BCL11A-5347 + GAGCUCCAUGUGCAGAACGA 20 6901
    BCL11A-5348 - UCACAGAUAAACUUCUGCAC 20 6902
    BCL11A-5349 + CGUCAUCCUCUGGCGUGACC 20 6903
    BCL11A-5350 - GGAGCUCUAAUCCCCACGCC 20 6904
    BCL11A-5351 - UCCCGUGGAGGUUGGCAUCC 20 6905
    BCL11A-5352 + AUUCCCGUUUGCUUAAGUGC 20 6906
    BCL11A-5353 + CCCCCAAUGGGAAGUUCAUC 20 6907
    BCL11A-5354 + GCUCCCAACGGGCCGUGGUC 20 6908
    BCL11A-5355 + UUUCAUCUCGAUUGGUGAAG 20 6909
    BCL11A-5356 - UGUUUAUCAACGUCAUCUAG 20 6910
    BCL11A-5357 + AGAGCUCCAUGUGCAGAACG 20 6911
    BCL11A-5358 - GAAAAAAGCAUCCAAUCCCG 20 6912
    BCL11A-5359 + GCGAGACAUGGUGGGCUGCG 20 6913
    BCL11A-5360 - CAGAUAAACUUCUGCACUGG 20 6914
    BCL11A-5361 + CGGCGAGACAUGGUGGGCUG 20 6915
    BCL11A-5362 + CUGCACUCAUCCCAGGCGUG 20 6916
    BCL11A-5363 - UGAACCAGACCACGGCCCGU 20 6917
    BCL11A-5364 - GCAUCCAAUCCCGUGGAGGU 20 6918
    BCL11A-5365 + UGCUUGCGGCGAGACAUGGU 20 6919
    BCL11A-5366 + UCAAGAGGCUCGGCUGUGGU 20 6920
    BCL11A-5367 - AUCAUGACCUCCUCACCUGU 20 6921
  • Table 15B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 15B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-5368 - UUUUUAUCGAGCACAAA 17 6922
    BCL11A-5369 - CCCAGCACUUAAGCAAA 17 6923
    BCL11A-5370 + AUAAGAAUGUCCCCCAA 17 6924
    BCL11A-5371 + CCUUCUGGAGCUCCCAA 17 6925
    BCL11A-5372 - AAACGGAAACAAUGCAA 17 6926
    BCL11A-5373 + UUCAUCAUCUGUAAGAA 17 6927
    BCL11A-5374 - CGUUGGGAGCUCCAGAA 17 6928
    BCL11A-5375 - UCCCCUCGUUCUGCACA 17 6929
    BCL11A-5376 - GAUGAUGAACCAGACCA 17 6930
    BCL11A-5377 + CUGGAUGCCAACCUCCA 17 6931
    BCL11A-5378 - CAGGUAAAUGAGAAGCA 17 6932
    BCL11A-5379 - UAAACUUCUGCACUGGA 17 6933
    BCL11A-5380 + UUCAUCUCGAUUGGUGA 17 6934
    BCL11A-5381 + CAUUUGUAGAAGAAAUA 17 6935
    BCL11A-5382 - AGGAAUUUGCCCCAAAC 17 6936
    BCL11A-5383 - CCAGCACUUAAGCAAAC 17 6937
    BCL11A-5384 + CUUCUGGAGCUCCCAAC 17 6938
    BCL11A-5385 + CAUCUGGCACUGCCCAC 17 6939
    BCL11A-5386 + UGGAUGCCAACCUCCAC 17 6940
    BCL11A-5387 - CAGAUAAACUUCUGCAC 17 6941
    BCL11A-5388 + UAUUCUGCACUCAUCCC 17 6942
    BCL11A-5389 - CGUGGAGGUUGGCAUCC 17 6943
    BCL11A-5390 - AAACAGGAACACAUAGC 17 6944
    BCL11A-5391 - UGCAGAAUAUGCCCCGC 17 6945
    BCL11A-5392 + AUGGUGGGCUGCGGGGC 17 6946
    BCL11A-5393 + ACUUACAAAUACCCUGC 17 6947
    BCL11A-5394 + UGUACAUGUGUAGCUGC 17 6948
    BCL11A-5395 + GAGACAUGGUGGGCUGC 17 6949
    BCL11A-5396 - GUGUUGUAUUAUUUUGC 17 6950
    BCL11A-5397 + CCAAUGGGAAGUUCAUC 17 6951
    BCL11A-5398 + AGGUCAUGAUCCCCUUC 17 6952
    BCL11A-5399 + GUAAGAAUGGCUUCAAG 17 6953
    BCL11A-5400 - GUUGGGAGCUCCAGAAG 17 6954
    BCL11A-5401 + CAGCUUUUUCUAAGCAG 17 6955
    BCL11A-5402 + UCCAUGUGCAGAACGAG 17 6956
    BCL11A-2671 + CAGAACGAGGGGAGGAG 17 6957
    BCL11A-5403 - AAACUUCUGCACUGGAG 17 6958
    BCL11A-5404 + GCUCCAUGUGCAGAACG 17 6959
    BCL11A-5405 - AAAAGCAUCCAAUCCCG 17 6960
    BCL11A-5406 + CUUACAAAUACCCUGCG 17 6961
    BCL11A-5407 + AUUGGUGAAGGGGAAGG 17 6962
    BCL11A-5408 + ACUGCCCACAGGUGAGG 17 6963
    BCL11A-4500 + GGGGCGGGCGGCGGCGG 17 6964
    BCL11A-5409 + UGCGGGGCGGGCGGCGG 17 6965
    BCL11A-5410 + GGCUGCGGGGCGGGCGG 17 6966
    BCL11A-5411 + GUGGGCUGCGGGGCGGG 17 6967
    BCL11A-5412 + AUGUGCAGAACGAGGGG 17 6968
    BCL11A-5413 + CAUGGUGGGCUGCGGGG 17 6969
    BCL11A-5414 + CUUGCGGCGAGACAUGG 17 6970
    BCL11A-5415 - AUAAACUUCUGCACUGG 17 6971
    BCL11A-5416 - AGCAUCCAAUCCCGUGG 17 6972
    BCL11A-5417 - GAUGAACUUCCCAUUGG 17 6973
    BCL11A-5418 - CAUGACCUCCUCACCUG 17 6974
    BCL11A-5419 + AACUUACAAAUACCCUG 17 6975
    BCL11A-5420 - CUGCUUAGAAAAAGCUG 17 6976
    BCL11A-5421 + UUCAAGAGGCUCGGCUG 17 6977
    BCL11A-5422 + CGAGACAUGGUGGGCUG 17 6978
    BCL11A-5423 + CACUCAUCCCAGGCGUG 17 6979
    BCL11A-5424 + GGCACUGCCCACAGGUG 17 6980
    BCL11A-5425 - AGAUGAACUUCCCAUUG 17 6981
    BCL11A-5426 + GGGGUUUGCCUUGCUUG 17 6982
    BCL11A-5427 + CUAUGUGUUCCUGUUUG 17 6983
    BCL11A-5428 + UAAGAAUGUCCCCCAAU 17 6984
    BCL11A-5429 - CCAGAUGAACUUCCCAU 17 6985
    BCL11A-5430 + GCCAACCUCCACGGGAU 17 6986
    BCL11A-5431 + AUUAUUAUUACUAUUAU 17 6987
    BCL11A-5432 - CUCUAAUCCCCACGCCU 17 6988
    BCL11A-5433 + AAUGGCUUCAAGAGGCU 17 6989
    BCL11A-5434 + GUACAUGUGUAGCUGCU 17 6990
    BCL11A-5435 - ACCAGACCACGGCCCGU 17 6991
    BCL11A-5436 + GCACUCAUCCCAGGCGU 17 6992
    BCL11A-5437 + AGAGGCUCGGCUGUGGU 17 6993
    BCL11A-5438 - CAGAUGAACUUCCCAUU 17 6994
    BCL11A-5439 + UUAUUAUUACUAUUAUU 17 6995
    BCL11A-5440 - CCAGACCACGGCCCGUU 17 6996
    BCL11A-5441 + UGCUAUGUGUUCCUGUU 17 6997
    BCL11A-5442 + GCUAUGUGUUCCUGUUU 17 6998
    BCL11A-5443 - AACCCCAGCACUUAAGCAAA 20 6999
    BCL11A-5444 + AAAAUAAGAAUGUCCCCCAA 20 7000
    BCL11A-5445 - CACAAACGGAAACAAUGCAA 20 7001
    BCL11A-5446 + UGGUUCAUCAUCUGUAAGAA 20 7002
    BCL11A-5447 - GCCCGUUGGGAGCUCCAGAA 20 7003
    BCL11A-5448 - UCCUCCCCUCGUUCUGCACA 20 7004
    BCL11A-5449 - ACAGAUGAUGAACCAGACCA 20 7005
    BCL11A-5450 + GACCUGGAUGCCAACCUCCA 20 7006
    BCL11A-5451 - UAGCAGGUAAAUGAGAAGCA 20 7007
    BCL11A-5452 - AGUGCAGAAUAUGCCCCGCA 20 7008
    BCL11A-5453 - GGCCCGUUGGGAGCUCCAGA 20 7009
    BCL11A-5454 + AUCUCGAUUGGUGAAGGGGA 20 7010
    BCL11A-5455 - AGAUAAACUUCUGCACUGGA 20 7011
    BCL11A-5456 + UUUUUCAUCUCGAUUGGUGA 20 7012
    BCL11A-5457 - UAGAGGAAUUUGCCCCAAAC 20 7013
    BCL11A-5458 - ACCCCAGCACUUAAGCAAAC 20 7014
    BCL11A-5459 + CCCCUUCUGGAGCUCCCAAC 20 7015
    BCL11A-5460 + GUUCAUCUGGCACUGCCCAC 20 7016
    BCL11A-5461 + ACCUGGAUGCCAACCUCCAC 20 7017
    BCL11A-5462 + GCAUAUUCUGCACUCAUCCC 20 7018
    BCL11A-5463 - CCCAAACAGGAACACAUAGC 20 7019
    BCL11A-5464 - GAGUGCAGAAUAUGCCCCGC 20 7020
    BCL11A-5465 + GACAUGGUGGGCUGCGGGGC 20 7021
    BCL11A-5466 + UCAACUUACAAAUACCCUGC 20 7022
    BCL11A-5467 + AGUUGUACAUGUGUAGCUGC 20 7023
    BCL11A-5468 + GGCGAGACAUGGUGGGCUGC 20 7024
    BCL11A-5469 - UUGGUGUUGUAUUAUUUUGC 20 7025
    BCL11A-5470 + GAUAAACAAUCGUCAUCCUC 20 7026
    BCL11A-5471 + AGGAGGUCAUGAUCCCCUUC 20 7027
    BCL11A-5472 + UCUGUAAGAAUGGCUUCAAG 20 7028
    BCL11A-5473 - CCCGUUGGGAGCUCCAGAAG 20 7029
    BCL11A-5474 - UGGCAUCCAGGUCACGCCAG 20 7030
    BCL11A-5475 + CCACAGCUUUUUCUAAGCAG 20 7031
    BCL11A-5476 + AGCUCCAUGUGCAGAACGAG 20 7032
    BCL11A-5477 + GUGCAGAACGAGGGGAGGAG 20 7033
    BCL11A-5478 - GAUAAACUUCUGCACUGGAG 20 7034
    BCL11A-5479 + CUGGAGCUCCCAACGGGCCG 20 7035
    BCL11A-5480 + UUCUGCACUCAUCCCAGGCG 20 7036
    BCL11A-5481 + CAACUUACAAAUACCCUGCG 20 7037
    BCL11A-5482 + UCGAUUGGUGAAGGGGAAGG 20 7038
    BCL11A-5483 + GGCACUGCCCACAGGUGAGG 20 7039
    BCL11A-5484 + UGCGGGGCGGGCGGCGGCGG 20 7040
    BCL11A-5485 + GGCUGCGGGGCGGGCGGCGG 20 7041
    BCL11A-5486 + GUGGGCUGCGGGGCGGGCGG 20 7042
    BCL11A-5487 + AUGGUGGGCUGCGGGGCGGG 20 7043
    BCL11A-5488 + UCCAUGUGCAGAACGAGGGG 20 7044
    BCL11A-5489 + AGACAUGGUGGGCUGCGGGG 20 7045
    BCL11A-5490 + UUGCUUGCGGCGAGACAUGG 20 7046
    BCL11A-5491 - AAAAGCAUCCAAUCCCGUGG 20 7047
    BCL11A-5492 - CCAGAUGAACUUCCCAUUGG 20 7048
    BCL11A-5493 - GAUCAUGACCUCCUCACCUG 20 7049
    BCL11A-5494 + CUCAACUUACAAAUACCCUG 20 7050
    BCL11A-5495 - CCUCUGCUUAGAAAAAGCUG 20 7051
    BCL11A-5496 + GGCUUCAAGAGGCUCGGCUG 20 7052
    BCL11A-5497 + UCCCGUUUGCUUAAGUGCUG 20 7053
    BCL11A-5498 + UCUGGCACUGCCCACAGGUG 20 7054
    BCL11A-5499 - GCCAGAUGAACUUCCCAUUG 20 7055
    BCL11A-5500 + GCUGGGGUUUGCCUUGCUUG 20 7056
    BCL11A-5501 + CUGCUAUGUGUUCCUGUUUG 20 7057
    BCL11A-5502 + AAAUAAGAAUGUCCCCCAAU 20 7058
    BCL11A-5503 - GUGCCAGAUGAACUUCCCAU 20 7059
    BCL11A-5504 + GAUGCUUUUUUCAUCUCGAU 20 7060
    BCL11A-5505 + GAUGCCAACCUCCACGGGAU 20 7061
    BCL11A-5506 - GAGCUCUAAUCCCCACGCCU 20 7062
    BCL11A-5507 + AAGAAUGGCUUCAAGAGGCU 20 7063
    BCL11A-5508 + GUUGUACAUGUGUAGCUGCU 20 7064
    BCL11A-5509 + UUCCCGUUUGCUUAAGUGCU 20 7065
    BCL11A-5510 + UCUGCACUCAUCCCAGGCGU 20 7066
    BCL11A-5511 - UGCCAGAUGAACUUCCCAUU 20 7067
    BCL11A-5512 - GAACCAGACCACGGCCCGUU 20 7068
    BCL11A-5513 + ACCUGCUAUGUGUUCCUGUU 20 7069
    BCL11A-5514 + CCUGCUAUGUGUUCCUGUUU 20 7070
  • Table 15C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 15C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-5515 + UCCGACGAGGAGGCAAA 17 7071
    BCL11A-5516 + AUUCUUAGCAGGUUAAA 17 7072
    BCL11A-5517 - GCUGCGGUUGAAUCCAA 17 7073
    BCL11A-5518 - GGCCCAGCCCUAUGCAA 17 7074
    BCL11A-5519 + CCGCAGCACCCUGUCAA 17 7075
    BCL11A-5520 - CUUCCGGCCUGGCAGAA 17 7076
    BCL11A-5521 + UUGAUGCGCUUAGAGAA 17 7077
    BCL11A-5522 - AACCUGAUCCCGGAGAA 17 7078
    BCL11A-5523 - GAGCACUCCUCGGAGAA 17 7079
    BCL11A-5524 + CUGGGUACUACGCCGAA 17 7080
    BCL11A-5525 + UCUCCGAAGCUAAGGAA 17 7081
    BCL11A-5526 + GGGGGCGUCGCCAGGAA 17 7082
    BCL11A-5527 + UUGCUACCUGGCUGGAA 17 7083
    BCL11A-5528 + CUGCACCUAGUCCUGAA 17 7084
    BCL11A-5529 + AACCAUGCACUGGUGAA 17 7085
    BCL11A-5530 + AUUUUCUCAGAACUUAA 17 7086
    BCL11A-5531 + UAUUCUUAGCAGGUUAA 17 7087
    BCL11A-5532 - GACGAUGGCACUGUUAA 17 7088
    BCL11A-5533 + CGGUGGUGGACUAAACA 17 7089
    BCL11A-5534 - GGCCGCGAUGCCCAACA 17 7090
    BCL11A-5535 - UACUUAGAAAGCGAACA 17 7091
    BCL11A-2969 - GCACCGGCGCAGCCACA 17 7092
    BCL11A-2924 - CGAGGCCGAGGGCCACA 17 7093
    BCL11A-5536 - CCCGAGUGCCUUUGACA 17 7094
    BCL11A-5537 + CUUGAACUUGGCCACCA 17 7095
    BCL11A-5538 - AAAAUUUGAAGCCCCCA 17 7096
    BCL11A-5539 + CUGCAAUAUGAAUCCCA 17 7097
    BCL11A-5540 - UAUGGAGCCUCCCGCCA 17 7098
    BCL11A-5541 + CGGGUGAUGGGUGGCCA 17 7099
    BCL11A-5542 + UCUCCUAGAGAAAUCCA 17 7100
    BCL11A-5543 - UCCCAGCCACCUCUCCA 17 7101
    BCL11A-5544 - CUCGGGGCGCAGCGGCA 17 7102
    BCL11A-5545 - CGACGUCAUGCAGGGCA 17 7103
    BCL11A-5546 + CUGCAUGACGUCGGGCA 17 7104
    BCL11A-5547 - GACUUAGAGAGCUGGCA 17 7105
    BCL11A-5548 - CUGCCCGACGUCAUGCA 17 7106
    BCL11A-5549 + CUCGCUGAAGUGCUGCA 17 7107
    BCL11A-5550 - AGCCAUUCACCAGUGCA 17 7108
    BCL11A-5551 - CACGCACAGAACACUCA 17 7109
    BCL11A-5552 + GUCGGACUUGACCGUCA 17 7110
    BCL11A-5553 + ACCAACCCGCGGGGUCA 17 7111
    BCL11A-5554 - AGGCCCAGCUCAAAAGA 17 7112
    BCL11A-5555 - GCUUCCGGCCUGGCAGA 17 7113
    BCL11A-5556 - CCUGGGGGCGGAAGAGA 17 7114
    BCL11A-5557 + CUUGAUGCGCUUAGAGA 17 7115
    BCL11A-5558 - GCUGACGGAGAGCGAGA 17 7116
    BCL11A-5559 - GCGCAUCAAGCUCGAGA 17 7117
    BCL11A-5560 - UCGGACCGCAUAGACGA 17 7118
    BCL11A-5561 - ACGGUCAAGUCCGACGA 17 7119
    BCL11A-5562 - CACCUGGCCGAGGCCGA 17 7120
    BCL11A-5563 + GUCUCCGAAGCUAAGGA 17 7121
    BCL11A-5564 + GGGGGGCGUCGCCAGGA 17 7122
    BCL11A-5565 + AGGUUGGAGACAGAGGA 17 7123
    BCL11A-5566 + GGGCGGAUUGCAGAGGA 17 7124
    BCL11A-5567 + GGGGCUGGGAGGGAGGA 17 7125
    BCL11A-5568 - CCGGGGAGCUGGACGGA 17 7126
    BCL11A-5569 - GUGUGGCAGUUUUCGGA 17 7127
    BCL11A-5570 + GGAUUGCAGAGGAGGGA 17 7128
    BCL11A-5571 + UUGACCGGGGGCUGGGA 17 7129
    BCL11A-5572 + UGGAGAGGUGGCUGGGA 17 7130
    BCL11A-5573 - CCGCCCGGGGAGCUGGA 17 7131
    BCL11A-5574 - GCGGCACGGGAAGUGGA 17 7132
    BCL11A-5575 + GCCCAGGACCUGGUGGA 17 7133
    BCL11A-5576 - CAAAUCGUCCCCCAUGA 17 7134
    BCL11A-5577 + UCUGCACCUAGUCCUGA 17 7135
    BCL11A-5578 - GGAGGAGGAGGAGCUGA 17 7136
    BCL11A-5579 + CAAAGGCACUCGGGUGA 17 7137
    BCL11A-5580 + GGCCCGGACCACUAAUA 17 7138
    BCL11A-5581 + GCAGUAACCUUUGCAUA 17 7139
    BCL11A-5582 - AGCGAGAGGGUGGACUA 17 7140
    BCL11A-5583 + UGGAGUCUCCGAAGCUA 17 7141
    BCL11A-5584 - GUUGAAUCCAAUGGCUA 17 7142
    BCL11A-5585 + CACAGGUUGCACUUGUA 17 7143
    BCL11A-5586 + AAUUUUCUCAGAACUUA 17 7144
    BCL11A-5587 + UCGGUGGUGGACUAAAC 17 7145
    BCL11A-5588 - ACCUGAUCCCGGAGAAC 17 7146
    BCL11A-5589 - AGCACUCCUCGGAGAAC 17 7147
    BCL11A-2979 - CACCGGCGCAGCCACAC 17 7148
    BCL11A-2916 - CCGAGGCCGAGGGCCAC 17 7149
    BCL11A-5590 + UGCACGCGUGGUCGCAC 17 7150
    BCL11A-5591 - UCGGGGCGCAGCGGCAC 17 7151
    BCL11A-5592 + CAAGAGAAACCAUGCAC 17 7152
    BCL11A-5593 - GCAACCUGGUGGUGCAC 17 7153
    BCL11A-5594 + GCAGCAGCUUUUUGGAC 17 7154
    BCL11A-5595 + CAUGACUUGGACUUGAC 17 7155
    BCL11A-5596 - ACCCGAGUGCCUUUGAC 17 7156
    BCL11A-5597 - CAAAUUUCAGAGCAACC 17 7157
    BCL11A-5598 - GCCAGCUCCCCGGAACC 17 7158
    BCL11A-5599 + UGCGCCGGUGCACCACC 17 7159
    BCL11A-5600 - GCAUAAGCGCGGCCACC 17 7160
    BCL11A-5601 - CAGCGAGGCCUUCCACC 17 7161
    BCL11A-5602 + GCUUCUCGCCCAGGACC 17 7162
    BCL11A-5603 + AUGACUUGGACUUGACC 17 7163
    BCL11A-5604 - AACCUGCUAAGAAUACC 17 7164
    BCL11A-5605 + AAGGGCGGCUUGCUACC 17 7165
    BCL11A-5606 - CGACCACGCGUGCACCC 17 7166
    BCL11A-5607 - GAAAAUUUGAAGCCCCC 17 7167
    BCL11A-5608 + CCAUCUCUUCCGCCCCC 17 7168
    BCL11A-5609 - UCCUCCCUCCCAGCCCC 17 7169
    BCL11A-5610 - GGAGUUCGACCUGCCCC 17 7170
    BCL11A-5611 + CCUCCGUCCAGCUCCCC 17 7171
    BCL11A-5612 - GGCCGCGGCUGCUCCCC 17 7172
    BCL11A-5613 - AGCCCACCGCUGUCCCC 17 7173
    BCL11A-5614 - GCUUCUCCACACCGCCC 17 7174
    BCL11A-5615 + CCGAGGCCGACUCGCCC 17 7175
    BCL11A-5616 + GCUUAUGCUUCUCGCCC 17 7176
    BCL11A-5617 - AUUAGUGGUCCGGGCCC 17 7177
    BCL11A-5618 - GGCGGAAGAGAUGGCCC 17 7178
    BCL11A-5619 + UUGAGCUGGGCCUGCCC 17 7179
    BCL11A-5620 - CUCCACCGCCAGCUCCC 17 7180
    BCL11A-5621 + CCCUCCGUCCAGCUCCC 17 7181
    BCL11A-5622 - UGGCCGCGGCUGCUCCC 17 7182
    BCL11A-5623 - CUGCAACCAUUCCAGCC 17 7183
    BCL11A-5624 - CGGCUUCGGGCUGAGCC 17 7184
    BCL11A-5625 - CGCUUCUCCACACCGCC 17 7185
    BCL11A-5626 - CCACCGCAUAGAGCGCC 17 7186
    BCL11A-5627 + CCCGAGGCCGACUCGCC 17 7187
    BCL11A-5628 + GGAGGGGGGGCGUCGCC 17 7188
    BCL11A-5629 + AUAGGGCUGGGCCGGCC 17 7189
    BCL11A-5630 - GAGAGAGGCUUCCGGCC 17 7190
    BCL11A-5631 + UGUUGGGCAUCGCGGCC 17 7191
    BCL11A-5632 + GGCCCUCGGCCUCGGCC 17 7192
    BCL11A-5633 + CUGGGCCUGCCCGGGCC 17 7193
    BCL11A-5634 - UAUUAGUGGUCCGGGCC 17 7194
    BCL11A-5635 + GCUUCAGCUUGCUGGCC 17 7195
    BCL11A-5636 + UCGGGUGAUGGGUGGCC 17 7196
    BCL11A-5637 + UUUGAGCUGGGCCUGCC 17 7197
    BCL11A-5638 + GGGAUCUUUGAGCUGCC 17 7198
    BCL11A-5639 + GAAAGCGCCCUUCUGCC 17 7199
    BCL11A-5640 + ACCAAGUCGCUGGUGCC 17 7200
    BCL11A-5641 + UCUCUCGAUACUGAUCC 17 7201
    BCL11A-5642 - CGACCCCAACCUGAUCC 17 7202
    BCL11A-5643 + GGUGGCGCGCCGCCUCC 17 7203
    BCL11A-5644 - CCGGCUACGCGGCCUCC 17 7204
    BCL11A-5645 + CCUCGUCCCCGUUCUCC 17 7205
    BCL11A-5646 - GGCCUUCCACCAGGUCC 17 7206
    BCL11A-5647 - CCCCAUAUUAGUGGUCC 17 7207
    BCL11A-5648 - UAGCAAGCCGCCCUUCC 17 7208
    BCL11A-5649 + CGCUGGUGCCGGGUUCC 17 7209
    BCL11A-5650 - UAGGAGACUUAGAGAGC 17 7210
    BCL11A-5651 + GAAGGGGCUCAGCGAGC 17 7211
    BCL11A-2886 - CACACCGCCCGGGGAGC 17 7212
    BCL11A-5652 + GCCGGGUUCCGGGGAGC 17 7213
    BCL11A-5653 + UCUGCCCUCUUUUGAGC 17 7214
    BCL11A-5654 + CCUGGAGGCCGCGUAGC 17 7215
    BCL11A-5655 + AUCCUGGUAUUCUUAGC 17 7216
    BCL11A-5656 + AAGGGAUACCAACCCGC 17 7217
    BCL11A-5657 - AAGUCCCCUGACCCCGC 17 7218
    BCL11A-5658 + CGCCCGUGUGGCUGCGC 17 7219
    BCL11A-5659 + UAUGCGGUCCGACUCGC 17 7220
    BCL11A-5660 - CCACGAGAACAGCUCGC 17 7221
    BCL11A-5661 - UACUCGCAGUGGCUCGC 17 7222
    BCL11A-5662 + GCUGCCCACCAAGUCGC 17 7223
    BCL11A-5663 - CACCGCUGUCCCCAGGC 17 7224
    BCL11A-5664 + GCGCCCUUCUGCCAGGC 17 7225
    BCL11A-5665 + GUGUUGGGCAUCGCGGC 17 7226
    BCL11A-5666 + UAACCUUUGCAUAGGGC 17 7227
    BCL11A-5667 - GUGGUCCGGGCCCGGGC 17 7228
    BCL11A-5668 + CCUGCAUGACGUCGGGC 17 7229
    BCL11A-5669 + UGGACUUGACCGGGGGC 17 7230
    BCL11A-5670 + GCAUCGCGGCCGGGGGC 17 7231
    BCL11A-5671 + UUUGCAUAGGGCUGGGC 17 7232
    BCL11A-5672 + CUAGAGAAAUCCAUGGC 17 7233
    BCL11A-5673 + GCGGCUUGCUACCUGGC 17 7234
    BCL11A-5674 - AGACUUAGAGAGCUGGC 17 7235
    BCL11A-5675 + UCCCAUGGAGAGGUGGC 17 7236
    BCL11A-5676 - GACGAAGACUCGGUGGC 17 7237
    BCL11A-5677 - CCUGCCCGACGUCAUGC 17 7238
    BCL11A-5394 + UGUACAUGUGUAGCUGC 17 7239
    BCL11A-5678 + GGACUUGAGCGCGCUGC 17 7240
    BCL11A-5679 - GUCCAAAAAGCUGCUGC 17 7241
    BCL11A-5680 + CACCAAGUCGCUGGUGC 17 7242
    BCL11A-5681 + GUGGCGCUUCAGCUUGC 17 7243
    BCL11A-5682 + CCCCGUUCUCCGGGAUC 17 7244
    BCL11A-5683 + CCCUGUCAAAGGCACUC 17 7245
    BCL11A-5684 - CCGGGCGAGUCGGCCUC 17 7246
    BCL11A-5685 - CUGGACGGAGGGAUCUC 17 7247
    BCL11A-5686 + ACACAUCUUGAGCUCUC 17 7248
    BCL11A-5687 + UCCUCGUCCCCGUUCUC 17 7249
    BCL11A-5688 + AUGCCCUGCAUGACGUC 17 7250
    BCL11A-5689 + UACCAACCCGCGGGGUC 17 7251
    BCL11A-5690 - GCCCCAUAUUAGUGGUC 17 7252
    BCL11A-5691 + GGCAAAAGGCGAUUGUC 17 7253
    BCL11A-5692 - CGGGUUGGUAUCCCUUC 17 7254
    BCL11A-5693 - GUAUCGAGAGAGGCUUC 17 7255
    BCL11A-5694 - GGGUGGACUACGGCUUC 17 7256
    BCL11A-5695 + UCGCUGGUGCCGGGUUC 17 7257
    BCL11A-5696 - CAGGCCCAGCUCAAAAG 17 7258
    BCL11A-5697 + GUGAAGAACCUAGAAAG 17 7259
    BCL11A-5698 + UUCUUAGCAGGUUAAAG 17 7260
    BCL11A-3087 - CGAGGAAGAGGAAGAAG 17 7261
    BCL11A-5699 + UGAUGCGCUUAGAGAAG 17 7262
    BCL11A-3083 - GGAGGACGACGAGGAAG 17 7263
    BCL11A-3089 - GGAAGAAGAGGAGGAAG 17 7264
    BCL11A-3075 - CGGGGACGAGGAGGAAG 17 7265
    BCL11A-2876 - CGCAGCGGCACGGGAAG 17 7266
    BCL11A-5700 + GGUGGUGGACUAAACAG 17 7267
    BCL11A-5701 + AAAGAGGUUGGAGACAG 17 7268
    BCL11A-5702 + GGCCGGCCUGGGGACAG 17 7269
    BCL11A-5703 - AAAUUUGAAGCCCCCAG 17 7270
    BCL11A-5704 - GGGAUCUCGGGGCGCAG 17 7271
    BCL11A-5705 - AGAACGUGUACUCGCAG 17 7272
    BCL11A-5706 + GGAGGGGCGGAUUGCAG 17 7273
    BCL11A-5707 + CCAACCCGCGGGGUCAG 17 7274
    BCL11A-5708 - AGGAUCAGUAUCGAGAG 17 7275
    BCL11A-5709 - AGCUGACGGAGAGCGAG 17 7276
    BCL11A-5710 + GGUUGGAGACAGAGGAG 17 7277
    BCL11A-5711 + GGGCUGGGAGGGAGGAG 17 7278
    BCL11A-5712 + GAUUGCAGAGGAGGGAG 17 7279
    BCL11A-5713 + ACUAAACAGGGGGGGAG 17 7280
    BCL11A-5714 + AUAUGAAUCCCAUGGAG 17 7281
    BCL11A-5715 - AGCACGCCCCAUAUUAG 17 7282
    BCL11A-5716 - CCUGAUCCCGGAGAACG 17 7283
    BCL11A-3081 - GGAAGAGGAGGACGACG 17 7284
    BCL11A-5717 + CGAGGAGUGCUCCGACG 17 7285
    BCL11A-2837 - CCCGGAGAACGGGGACG 17 7286
    BCL11A-5718 - GUGGCUCGCCGGCUACG 17 7287
    BCL11A-5719 + UGACUUGGACUUGACCG 17 7288
    BCL11A-5720 + GAAGGGAUACCAACCCG 17 7289
    BCL11A-5721 - GAAGUCCCCUGACCCCG 17 7290
    BCL11A-5722 + UUUGGACAGGCCCCCCG 17 7291
    BCL11A-5723 - CUUCUCCACACCGCCCG 17 7292
    BCL11A-5724 + CGAGGCCGACUCGCCCG 17 7293
    BCL11A-2946 + CGCCCGGGGAGCAGCCG 17 7294
    BCL11A-5725 - CCACCUGGCCGAGGCCG 17 7295
    BCL11A-5726 + GUUGGGCAUCGCGGCCG 17 7296
    BCL11A-5727 - GGCACUGUUAAUGGCCG 17 7297
    BCL11A-5728 - GCGCGGCCACCUGGCCG 17 7298
    BCL11A-5729 + CAAACUCCCGUUCUCCG 17 7299
    BCL11A-5730 - CAGCGCGCUCAAGUCCG 17 7300
    BCL11A-5731 + GCUGGUGCCGGGUUCCG 17 7301
    BCL11A-5732 - GGCGAGAAGCAUAAGCG 17 7302
    BCL11A-5733 - CAUGCAGCACUUCAGCG 17 7303
    BCL11A-5734 + UGGCCUGGGUGCACGCG 17 7304
    BCL11A-5735 + AGGGAUACCAACCCGCG 17 7305
    BCL11A-5736 - CACGAGAACAGCUCGCG 17 7306
    BCL11A-5737 + UGACGUCGGGCAGGGCG 17 7307
    BCL11A-5738 - GAACAGCUCGCGGGGCG 17 7308
    BCL11A-5739 - GGGCGCGGUCGUGGGCG 17 7309
    BCL11A-5740 + CUCCGUGUUGGGCAUCG 17 7310
    BCL11A-5741 - CGGGCGAGUCGGCCUCG 17 7311
    BCL11A-5742 - ACCACGAGAACAGCUCG 17 7312
    BCL11A-5743 - UGGACGGAGGGAUCUCG 17 7313
    BCL11A-5744 + CCCGCGAGCUGUUCUCG 17 7314
    BCL11A-5745 - CUCGCGGGGCGCGGUCG 17 7315
    BCL11A-5746 + GUGGUGGACUAAACAGG 17 7316
    BCL11A-5747 + CCUCGGCCUCGGCCAGG 17 7317
    BCL11A-3090 - GGAAGAGGAAGAAGAGG 17 7318
    BCL11A-3091 - AGAAGAGGAGGAAGAGG 17 7319
    BCL11A-3088 - GGACGAGGAGGAAGAGG 17 7320
    BCL11A-5748 + GAGGUUGGAGACAGAGG 17 7321
    BCL11A-5749 + GGGGCGGAUUGCAGAGG 17 7322
    BCL11A-5750 + UGAAUCCCAUGGAGAGG 17 7323
    BCL11A-5751 + GGAGUGCUCCGACGAGG 17 7324
    BCL11A-3066 - GGAGAACGGGGACGAGG 17 7325
    BCL11A-3092 - AGAGGAGGAAGAGGAGG 17 7326
    BCL11A-5752 + GUUGGAGACAGAGGAGG 17 7327
    BCL11A-3093 - GGAGGAAGAGGAGGAGG 17 7328
    BCL11A-5753 + AUUGCAGAGGAGGGAGG 17 7329
    BCL11A-5754 + GGGGGCUGGGAGGGAGG 17 7330
    BCL11A-5755 - CGGGCUGAGCCUGGAGG 17 7331
    BCL11A-5756 - CCCGGGGAGCUGGACGG 17 7332
    BCL11A-5757 + GACUUGGACUUGACCGG 17 7333
    BCL11A-5758 + UUGGGCAUCGCGGCCGG 17 7334
    BCL11A-5759 + CGGCCUGGGGACAGCGG 17 7335
    BCL11A-5760 + UUCCGGGGAGCUGGCGG 17 7336
    BCL11A-5761 + CCAGGCGCUCUAUGCGG 17 7337
    BCL11A-5762 - UUGCGACGAAGACUCGG 17 7338
    BCL11A-5763 - GGGCGAGUCGGCCUCGG 17 7339
    BCL11A-5764 + UCCAAGUGAUGUCUCGG 17 7340
    BCL11A-5765 + GGCGUCGCCAGGAAGGG 17 7341
    BCL11A-5766 + UGGUGGACUAAACAGGG 17 7342
    BCL11A-3076 - GACGGAGAGCGAGAGGG 17 7343
    BCL11A-5767 + CGGAUUGCAGAGGAGGG 17 7344
    BCL11A-5768 + UUGCAGAGGAGGGAGGG 17 7345
    BCL11A-5769 + ACCGGGGGCUGGGAGGG 17 7346
    BCL11A-5770 + CCGUCCAGCUCCCCGGG 17 7347
    BCL11A-5771 + GAGAAAUCCAUGGCGGG 17 7348
    BCL11A-5772 - GGCGAGUCGGCCUCGGG 17 7349
    BCL11A-5773 + GGUGGACUAAACAGGGG 17 7350
    BCL11A-5774 - UUUGAAGCCCCCAGGGG 17 7351
    BCL11A-5775 + CUGGGAGGGAGGAGGGG 17 7352
    BCL11A-5776 + UGCAGAGGAGGGAGGGG 17 7353
    BCL11A-5777 - CAUAGAGCGCCUGGGGG 17 7354
    BCL11A-5778 - AGCCCCCAGGGGUGGGG 17 7355
    BCL11A-5779 + GGCACUCGGGUGAUGGG 17 7356
    BCL11A-5780 + CUUGACCGGGGGCUGGG 17 7357
    BCL11A-5781 + AACAGGGGGGGAGUGGG 17 7358
    BCL11A-5782 + GGUACUACGCCGAAUGG 17 7359
    BCL11A-5783 + CCUAGAGAAAUCCAUGG 17 7360
    BCL11A-5784 + GGACUUGACCGUCAUGG 17 7361
    BCL11A-5785 - AUUUCAGAGCAACCUGG 17 7362
    BCL11A-5786 + UCUCGCCCAGGACCUGG 17 7363
    BCL11A-5787 - CUUCGGGCUGAGCCUGG 17 7364
    BCL11A-5788 - CCGCAUAGAGCGCCUGG 17 7365
    BCL11A-5789 + AUCUUUGAGCUGCCUGG 17 7366
    BCL11A-5790 + GGGUUCCGGGGAGCUGG 17 7367
    BCL11A-5791 - AGCGGCACGGGAAGUGG 17 7368
    BCL11A-5792 - CGCGCUCAAGUCCGUGG 17 7369
    BCL11A-5793 + GCGAGCUGUUCUCGUGG 17 7370
    BCL11A-5794 + GGCGCUCUAUGCGGUGG 17 7371
    BCL11A-5795 + AAGUGAUGUCUCGGUGG 17 7372
    BCL11A-5796 - CGGCACCAGCGACUUGG 17 7373
    BCL11A-5797 + GGGUACUACGCCGAAUG 17 7374
    BCL11A-5798 + CGGACUUGACCGUCAUG 17 7375
    BCL11A-5799 + GCAUGUGCGUCUUCAUG 17 7376
    BCL11A-5800 + CCCGGACCACUAAUAUG 17 7377
    BCL11A-5801 + CCCCCAGGCGCUCUAUG 17 7378
    BCL11A-5802 + CAGUGCCAUCGUCUAUG 17 7379
    BCL11A-5803 - GACACUUGUGAGUACUG 17 7380
    BCL11A-5804 + CGUCGCAAGUGUCCCUG 17 7381
    BCL11A-5805 - ACCGCAUAGAGCGCCUG 17 7382
    BCL11A-5806 + AGGGCUGGGCCGGCCUG 17 7383
    BCL11A-5807 + AGGGGCUCAGCGAGCUG 17 7384
    BCL11A-5808 - CCUUUGACAGGGUGCUG 17 7385
    BCL11A-5809 - AAGUCAUGCGAGUUCUG 17 7386
    BCL11A-5810 + AGGGCUUCUCGCCCGUG 17 7387
    BCL11A-5811 + CAGCUCCCCGGGCGGUG 17 7388
    BCL11A-5812 + AGGCGCUCUAUGCGGUG 17 7389
    BCL11A-5813 - UGAAGCCCCCAGGGGUG 17 7390
    BCL11A-5814 - AGAGAGCUCAAGAUGUG 17 7391
    BCL11A-5815 + UCUCCGGGAUCAGGUUG 17 7392
    BCL11A-5816 + UGGGUACUACGCCGAAU 17 7393
    BCL11A-5817 + GGAGGCUCCAUAGCCAU 17 7394
    BCL11A-5818 - CCCAGCCACCUCUCCAU 17 7395
    BCL11A-5819 + UGCAGUAACCUUUGCAU 17 7396
    BCL11A-5820 + UCGGACUUGACCGUCAU 17 7397
    BCL11A-5821 + AAAGGCACUCGGGUGAU 17 7398
    BCL11A-5822 + GCCCGGACCACUAAUAU 17 7399
    BCL11A-5823 + GUUCUCGCUCUUGAACU 17 7400
    BCL11A-5824 + ACCCUGUCAAAGGCACU 17 7401
    BCL11A-5825 - ACCACCGAGACAUCACU 17 7402
    BCL11A-5826 - CACUUGCGACGAAGACU 17 7403
    BCL11A-5827 - ACCCGGCACCAGCGACU 17 7404
    BCL11A-5828 - GGUAUCCCUUCAGGACU 17 7405
    BCL11A-5829 + GCAGAACUCGCAUGACU 17 7406
    BCL11A-5830 + AGUGUCCCUGUGGCCCU 17 7407
    BCL11A-5831 - CACCGCAUAGAGCGCCU 17 7408
    BCL11A-5832 + UAGGGCUGGGCCGGCCU 17 7409
    BCL11A-5833 + CCUGUGGCCCUCGGCCU 17 7410
    BCL11A-5834 - CCCGGGCGAGUCGGCCU 17 7411
    BCL11A-5835 + CUUCAGCUUGCUGGCCU 17 7412
    BCL11A-5836 - CUCGUCGGAGCACUCCU 17 7413
    BCL11A-5837 - GCCUUCCACCAGGUCCU 17 7414
    BCL11A-5838 + AAGGGGCUCAGCGAGCU 17 7415
    BCL11A-5839 + CUGCCCUCUUUUGAGCU 17 7416
    BCL11A-5840 + AACCUUUGCAUAGGGCU 17 7417
    BCL11A-5841 + GGACUUGACCGGGGGCU 17 7418
    BCL11A-5842 + CCCAUGGAGAGGUGGCU 17 7419
    BCL11A-5434 + GUACAUGUGUAGCUGCU 17 7420
    BCL11A-5843 - UCCAAAAAGCUGCUGCU 17 7421
    BCL11A-5844 - GCUGGACGGAGGGAUCU 17 7422
    BCL11A-5845 + CACAUCUUGAGCUCUCU 17 7423
    BCL11A-5846 - CCGCCAUGGAUUUCUCU 17 7424
    BCL11A-5847 + GGGUCCAAGUGAUGUCU 17 7425
    BCL11A-5848 - GUCUCCAACCUCUUUCU 17 7426
    BCL11A-5849 - CUCGGUGGCCGGCGAGU 17 7427
    BCL11A-5850 - CUGCUCCCCGGGCGAGU 17 7428
    BCL11A-5851 + CUAAACAGGGGGGGAGU 17 7429
    BCL11A-5852 + CAUGCCCUGCAUGACGU 17 7430
    BCL11A-5853 - GGCGCGGUCGUGGGCGU 17 7431
    BCL11A-5854 - GCCUUUUGCCUCCUCGU 17 7432
    BCL11A-5855 + GGUGGAGAGACCGUCGU 17 7433
    BCL11A-5856 - UCGCGGGGCGCGGUCGU 17 7434
    BCL11A-5857 + GUUCUCCGGGAUCAGGU 17 7435
    BCL11A-5858 + AGAACCUAGAAAGAGGU 17 7436
    BCL11A-5859 + GGCCUGGGGACAGCGGU 17 7437
    BCL11A-5860 + CAGGCGCUCUAUGCGGU 17 7438
    BCL11A-5861 - CCCCUGACCCCGCGGGU 17 7439
    BCL11A-5862 - UUGAAGCCCCCAGGGGU 17 7440
    BCL11A-5863 - GGCACCAGCGACUUGGU 17 7441
    BCL11A-5864 - ACACUUGUGAGUACUGU 17 7442
    BCL11A-5865 + GUACACGUUCUCCGUGU 17 7443
    BCL11A-5866 + GCACAGGUUGCACUUGU 17 7444
    BCL11A-5867 - CUUCACACACCCCCAUU 17 7445
    BCL11A-5868 - GAUCCCUUCCUUAGCUU 17 7446
    BCL11A-5869 - AGGGUGGACUACGGCUU 17 7447
    BCL11A-5870 + UUCUCCGGGAUCAGGUU 17 7448
    BCL11A-5871 + UACACGUUCUCCGUGUU 17 7449
    BCL11A-5872 + GCCCAGCAGCAGCUUUU 17 7450
    BCL11A-5873 - AGAUGUGUGGCAGUUUU 17 7451
    BCL11A-5874 + UGCUCCGACGAGGAGGCAAA 20 7452
    BCL11A-5875 + GGUAUUCUUAGCAGGUUAAA 20 7453
    BCL11A-5876 - GGUGCUGCGGUUGAAUCCAA 20 7454
    BCL11A-5877 - GCCGGCCCAGCCCUAUGCAA 20 7455
    BCL11A-5878 + CAACCGCAGCACCCUGUCAA 20 7456
    BCL11A-5879 - AGGCUUCCGGCCUGGCAGAA 20 7457
    BCL11A-5880 + AGCUUGAUGCGCUUAGAGAA 20 7458
    BCL11A-5881 - CCCAACCUGAUCCCGGAGAA 20 7459
    BCL11A-5882 - UCGGAGCACUCCUCGGAGAA 20 7460
    BCL11A-5883 + UCUCUGGGUACUACGCCGAA 20 7461
    BCL11A-5884 + GAGUCUCCGAAGCUAAGGAA 20 7462
    BCL11A-5885 + AGGGGGGGCGUCGCCAGGAA 20 7463
    BCL11A-5886 + GGCUUGCUACCUGGCUGGAA 20 7464
    BCL11A-5887 + AUUCUGCACCUAGUCCUGAA 20 7465
    BCL11A-5888 + AGAAACCAUGCACUGGUGAA 20 7466
    BCL11A-5889 + CAAAUUUUCUCAGAACUUAA 20 7467
    BCL11A-5890 + UGGUAUUCUUAGCAGGUUAA 20 7468
    BCL11A-5891 - AUAGACGAUGGCACUGUUAA 20 7469
    BCL11A-5892 + UCUCGGUGGUGGACUAAACA 20 7470
    BCL11A-5893 - CCCGGCCGCGAUGCCCAACA 20 7471
    BCL11A-5894 - AUCUACUUAGAAAGCGAACA 20 7472
    BCL11A-5895 - GGUGCACCGGCGCAGCCACA 20 7473
    BCL11A-3377 - GGCCGAGGCCGAGGGCCACA 20 7474
    BCL11A-5896 - UCACCCGAGUGCCUUUGACA 20 7475
    BCL11A-5897 + GCUCUUGAACUUGGCCACCA 20 7476
    BCL11A-5898 - GAGAAAAUUUGAAGCCCCCA 20 7477
    BCL11A-5899 + UGUCUGCAAUAUGAAUCCCA 20 7478
    BCL11A-5900 - GGCUAUGGAGCCUCCCGCCA 20 7479
    BCL11A-5901 + ACUCGGGUGAUGGGUGGCCA 20 7480
    BCL11A-5902 + AAGUCUCCUAGAGAAAUCCA 20 7481
    BCL11A-5903 - CCUUCCCAGCCACCUCUCCA 20 7482
    BCL11A-5904 - GAUCUCGGGGCGCAGCGGCA 20 7483
    BCL11A-5905 - GCCCGACGUCAUGCAGGGCA 20 7484
    BCL11A-5906 + GCCCUGCAUGACGUCGGGCA 20 7485
    BCL11A-5907 - GGAGACUUAGAGAGCUGGCA 20 7486
    BCL11A-5908 - GCCCUGCCCGACGUCAUGCA 20 7487
    BCL11A-5909 + GGCCUCGCUGAAGUGCUGCA 20 7488
    BCL11A-5910 - AACAGCCAUUCACCAGUGCA 20 7489
    BCL11A-5911 - CAACACGCACAGAACACUCA 20 7490
    BCL11A-5912 + GUCGUCGGACUUGACCGUCA 20 7491
    BCL11A-5913 + GAUACCAACCCGCGGGGUCA 20 7492
    BCL11A-5914 - GGCAGGCCCAGCUCAAAAGA 20 7493
    BCL11A-5915 - GAGGCUUCCGGCCUGGCAGA 20 7494
    BCL11A-5916 - GCGCCUGGGGGCGGAAGAGA 20 7495
    BCL11A-5917 + GAGCUUGAUGCGCUUAGAGA 20 7496
    BCL11A-5918 - GGAGCUGACGGAGAGCGAGA 20 7497
    BCL11A-5919 - UAAGCGCAUCAAGCUCGAGA 20 7498
    BCL11A-5920 - GAGUCGGACCGCAUAGACGA 20 7499
    BCL11A-5921 - AUGACGGUCAAGUCCGACGA 20 7500
    BCL11A-5922 - GGCCACCUGGCCGAGGCCGA 20 7501
    BCL11A-5923 + GGAGUCUCCGAAGCUAAGGA 20 7502
    BCL11A-5924 + GAGGGGGGGCGUCGCCAGGA 20 7503
    BCL11A-5925 + AAGAGGUUGGAGACAGAGGA 20 7504
    BCL11A-5926 + GAGGGGCGGAUUGCAGAGGA 20 7505
    BCL11A-5927 + CCGGGGGCUGGGAGGGAGGA 20 7506
    BCL11A-5928 - CGCCCGGGGAGCUGGACGGA 20 7507
    BCL11A-5929 - GAUGUGUGGCAGUUUUCGGA 20 7508
    BCL11A-5930 + GGCGGAUUGCAGAGGAGGGA 20 7509
    BCL11A-5931 + GACUUGACCGGGGGCUGGGA 20 7510
    BCL11A-5932 + CCAUGGAGAGGUGGCUGGGA 20 7511
    BCL11A-5933 - ACACCGCCCGGGGAGCUGGA 20 7512
    BCL11A-5934 - GCAGCGGCACGGGAAGUGGA 20 7513
    BCL11A-5935 + CUCGCCCAGGACCUGGUGGA 20 7514
    BCL11A-5936 - GCACAAAUCGUCCCCCAUGA 20 7515
    BCL11A-5937 + CAUUCUGCACCUAGUCCUGA 20 7516
    BCL11A-5938 - AGAGGAGGAGGAGGAGCUGA 20 7517
    BCL11A-5939 + UGUCAAAGGCACUCGGGUGA 20 7518
    BCL11A-5940 + CCGGGCCCGGACCACUAAUA 20 7519
    BCL11A-5941 + GUUGCAGUAACCUUUGCAUA 20 7520
    BCL11A-5942 - GAGAGCGAGAGGGUGGACUA 20 7521
    BCL11A-5943 + GUCUGGAGUCUCCGAAGCUA 20 7522
    BCL11A-5944 - GCGGUUGAAUCCAAUGGCUA 20 7523
    BCL11A-5945 + UCGCACAGGUUGCACUUGUA 20 7524
    BCL11A-5946 + UCAAAUUUUCUCAGAACUUA 20 7525
    BCL11A-5947 + GUCUCGGUGGUGGACUAAAC 20 7526
    BCL11A-5948 - CCAACCUGAUCCCGGAGAAC 20 7527
    BCL11A-5949 - CGGAGCACUCCUCGGAGAAC 20 7528
    BCL11A-5950 - GUGCACCGGCGCAGCCACAC 20 7529
    BCL11A-5951 - UGGCCGAGGCCGAGGGCCAC 20 7530
    BCL11A-5952 + GGGUGCACGCGUGGUCGCAC 20 7531
    BCL11A-5953 - AUCUCGGGGCGCAGCGGCAC 20 7532
    BCL11A-5954 + UUGCAAGAGAAACCAUGCAC 20 7533
    BCL11A-5955 - AGAGCAACCUGGUGGUGCAC 20 7534
    BCL11A-5956 + CCAGCAGCAGCUUUUUGGAC 20 7535
    BCL11A-5957 + UCGCAUGACUUGGACUUGAC 20 7536
    BCL11A-5958 - AUCACCCGAGUGCCUUUGAC 20 7537
    BCL11A-5959 - GUUCAAAUUUCAGAGCAACC 20 7538
    BCL11A-5960 - ACCGCCAGCUCCCCGGAACC 20 7539
    BCL11A-5961 + GGCUGCGCCGGUGCACCACC 20 7540
    BCL11A-5962 - GAAGCAUAAGCGCGGCCACC 20 7541
    BCL11A-5963 - CUUCAGCGAGGCCUUCCACC 20 7542
    BCL11A-5964 + UAUGCUUCUCGCCCAGGACC 20 7543
    BCL11A-5965 + CGCAUGACUUGGACUUGACC 20 7544
    BCL11A-5966 - UUUAACCUGCUAAGAAUACC 20 7545
    BCL11A-5967 + AGGAAGGGCGGCUUGCUACC 20 7546
    BCL11A-5968 - GUGCGACCACGCGUGCACCC 20 7547
    BCL11A-5969 - UGAGAAAAUUUGAAGCCCCC 20 7548
    BCL11A-5970 + GGGCCAUCUCUUCCGCCCCC 20 7549
    BCL11A-5971 - CCCUCCUCCCUCCCAGCCCC 20 7550
    BCL11A-5972 - GAAGGAGUUCGACCUGCCCC 20 7551
    BCL11A-5973 + AUCCCUCCGUCCAGCUCCCC 20 7552
    BCL11A-5974 - AAUGGCCGCGGCUGCUCCCC 20 7553
    BCL11A-5975 - UCUAGCCCACCGCUGUCCCC 20 7554
    BCL11A-5976 - UGCGCUUCUCCACACCGCCC 20 7555
    BCL11A-5977 + CCCCCGAGGCCGACUCGCCC 20 7556
    BCL11A-5978 + CGCGCUUAUGCUUCUCGCCC 20 7557
    BCL11A-5979 - CAUAUUAGUGGUCCGGGCCC 20 7558
    BCL11A-5980 - GGGGGCGGAAGAGAUGGCCC 20 7559
    BCL11A-5981 + CUUUUGAGCUGGGCCUGCCC 20 7560
    BCL11A-5982 - UCUCUCCACCGCCAGCUCCC 20 7561
    BCL11A-5983 + GAUCCCUCCGUCCAGCUCCC 20 7562
    BCL11A-5984 - UAAUGGCCGCGGCUGCUCCC 20 7563
    BCL11A-5985 - UUACUGCAACCAUUCCAGCC 20 7564
    BCL11A-5986 - CUACGGCUUCGGGCUGAGCC 20 7565
    BCL11A-5987 - UUGCGCUUCUCCACACCGCC 20 7566
    BCL11A-5988 - CCCCCACCGCAUAGAGCGCC 20 7567
    BCL11A-5989 + CCCCCCGAGGCCGACUCGCC 20 7568
    BCL11A-5990 + GAGGGAGGGGGGGCGUCGCC 20 7569
    BCL11A-5991 + UGCAUAGGGCUGGGCCGGCC 20 7570
    BCL11A-5992 - AUCGAGAGAGGCUUCCGGCC 20 7571
    BCL11A-5993 + CCGUGUUGGGCAUCGCGGCC 20 7572
    BCL11A-5994 + UGUGGCCCUCGGCCUCGGCC 20 7573
    BCL11A-5995 + GAGCUGGGCCUGCCCGGGCC 20 7574
    BCL11A-5996 - CCAUAUUAGUGGUCCGGGCC 20 7575
    BCL11A-5997 + GGCGCUUCAGCUUGCUGGCC 20 7576
    BCL11A-5998 + CACUCGGGUGAUGGGUGGCC 20 7577
    BCL11A-5999 + UCUUUUGAGCUGGGCCUGCC 20 7578
    BCL11A-6000 + GAAGGGAUCUUUGAGCUGCC 20 7579
    BCL11A-6001 + GUGGAAAGCGCCCUUCUGCC 20 7580
    BCL11A-6002 + CCCACCAAGUCGCUGGUGCC 20 7581
    BCL11A-6003 + GCCUCUCUCGAUACUGAUCC 20 7582
    BCL11A-6004 - GAACGACCCCAACCUGAUCC 20 7583
    BCL11A-6005 + CGUGGUGGCGCGCCGCCUCC 20 7584
    BCL11A-6006 - UCGCCGGCUACGCGGCCUCC 20 7585
    BCL11A-6007 + CCUCCUCGUCCCCGUUCUCC 20 7586
    BCL11A-6008 - CGAGGCCUUCCACCAGGUCC 20 7587
    BCL11A-6009 - ACGCCCCAUAUUAGUGGUCC 20 7588
    BCL11A-6010 - AGGUAGCAAGCCGCCCUUCC 20 7589
    BCL11A-6011 + AGUCGCUGGUGCCGGGUUCC 20 7590
    BCL11A-6012 - CUCUAGGAGACUUAGAGAGC 20 7591
    BCL11A-6013 + AGAGAAGGGGCUCAGCGAGC 20 7592
    BCL11A-6014 - CUCCACACCGCCCGGGGAGC 20 7593
    BCL11A-6015 + GGUGCCGGGUUCCGGGGAGC 20 7594
    BCL11A-6016 + GCGUCUGCCCUCUUUUGAGC 20 7595
    BCL11A-6017 + CUGCCUGGAGGCCGCGUAGC 20 7596
    BCL11A-6018 + CUGAUCCUGGUAUUCUUAGC 20 7597
    BCL11A-6019 + CUGAAGGGAUACCAACCCGC 20 7598
    BCL11A-6020 - CGGAAGUCCCCUGACCCCGC 20 7599
    BCL11A-6021 + UCUCGCCCGUGUGGCUGCGC 20 7600
    BCL11A-6022 + GUCUAUGCGGUCCGACUCGC 20 7601
    BCL11A-6023 - CCACCACGAGAACAGCUCGC 20 7602
    BCL11A-6024 - GUGUACUCGCAGUGGCUCGC 20 7603
    BCL11A-6025 + GGCGCUGCCCACCAAGUCGC 20 7604
    BCL11A-6026 - GCCCACCGCUGUCCCCAGGC 20 7605
    BCL11A-6027 + AAAGCGCCCUUCUGCCAGGC 20 7606
    BCL11A-6028 + UCCGUGUUGGGCAUCGCGGC 20 7607
    BCL11A-6029 + CAGUAACCUUUGCAUAGGGC 20 7608
    BCL11A-6030 - UUAGUGGUCCGGGCCCGGGC 20 7609
    BCL11A-6031 + UGCCCUGCAUGACGUCGGGC 20 7610
    BCL11A-6032 + ACUUGGACUUGACCGGGGGC 20 7611
    BCL11A-6033 + UGGGCAUCGCGGCCGGGGGC 20 7612
    BCL11A-6034 + ACCUUUGCAUAGGGCUGGGC 20 7613
    BCL11A-6035 + CUCCUAGAGAAAUCCAUGGC 20 7614
    BCL11A-6036 + AGGGCGGCUUGCUACCUGGC 20 7615
    BCL11A-6037 - AGGAGACUUAGAGAGCUGGC 20 7616
    BCL11A-6038 + GAAUCCCAUGGAGAGGUGGC 20 7617
    BCL11A-6039 - UGCGACGAAGACUCGGUGGC 20 7618
    BCL11A-6040 - CGCCCUGCCCGACGUCAUGC 20 7619
    BCL11A-5467 + AGUUGUACAUGUGUAGCUGC 20 7620
    BCL11A-6041 + CACGGACUUGAGCGCGCUGC 20 7621
    BCL11A-6042 - CCUGUCCAAAAAGCUGCUGC 20 7622
    BCL11A-6043 + GCCCACCAAGUCGCUGGUGC 20 7623
    BCL11A-6044 + CAUGUGGCGCUUCAGCUUGC 20 7624
    BCL11A-6045 + CGUCCCCGUUCUCCGGGAUC 20 7625
    BCL11A-6046 + GCACCCUGUCAAAGGCACUC 20 7626
    BCL11A-6047 - UCCCCGGGCGAGUCGGCCUC 20 7627
    BCL11A-6048 - GAGCUGGACGGAGGGAUCUC 20 7628
    BCL11A-6049 + GCCACACAUCUUGAGCUCUC 20 7629
    BCL11A-6050 + UCCUCCUCGUCCCCGUUCUC 20 7630
    BCL11A-6051 + ACCAUGCCCUGCAUGACGUC 20 7631
    BCL11A-6052 + GGAUACCAACCCGCGGGGUC 20 7632
    BCL11A-6053 - CACGCCCCAUAUUAGUGGUC 20 7633
    BCL11A-6054 + GGAGGCAAAAGGCGAUUGUC 20 7634
    BCL11A-6055 - CCGCGGGUUGGUAUCCCUUC 20 7635
    BCL11A-6056 - UCAGUAUCGAGAGAGGCUUC 20 7636
    BCL11A-6057 - AGAGGGUGGACUACGGCUUC 20 7637
    BCL11A-6058 + AAGUCGCUGGUGCCGGGUUC 20 7638
    BCL11A-6059 - GGGCAGGCCCAGCUCAAAAG 20 7639
    BCL11A-6060 + UGUGUGAAGAACCUAGAAAG 20 7640
    BCL11A-6061 + GUAUUCUUAGCAGGUUAAAG 20 7641
    BCL11A-3449 - CGACGAGGAAGAGGAAGAAG 20 7642
    BCL11A-6062 + GCUUGAUGCGCUUAGAGAAG 20 7643
    BCL11A-3448 - AGAGGAGGACGACGAGGAAG 20 7644
    BCL11A-3453 - AGAGGAAGAAGAGGAGGAAG 20 7645
    BCL11A-3441 - GAACGGGGACGAGGAGGAAG 20 7646
    BCL11A-3376 - GGGCGCAGCGGCACGGGAAG 20 7647
    BCL11A-6063 + CUCGGUGGUGGACUAAACAG 20 7648
    BCL11A-6064 + UAGAAAGAGGUUGGAGACAG 20 7649
    BCL11A-6065 + CUGGGCCGGCCUGGGGACAG 20 7650
    BCL11A-6066 - AGAAAAUUUGAAGCCCCCAG 20 7651
    BCL11A-6067 - GGAGGGAUCUCGGGGCGCAG 20 7652
    BCL11A-6068 - CGGAGAACGUGUACUCGCAG 20 7653
    BCL11A-6069 + GGAGGAGGGGCGGAUUGCAG 20 7654
    BCL11A-6070 + AUACCAACCCGCGGGGUCAG 20 7655
    BCL11A-6071 - ACCAGGAUCAGUAUCGAGAG 20 7656
    BCL11A-6072 - AGGAGCUGACGGAGAGCGAG 20 7657
    BCL11A-6073 + AGAGGUUGGAGACAGAGGAG 20 7658
    BCL11A-6074 + CGGGGGCUGGGAGGGAGGAG 20 7659
    BCL11A-6075 + GCGGAUUGCAGAGGAGGGAG 20 7660
    BCL11A-6076 + UGGACUAAACAGGGGGGGAG 20 7661
    BCL11A-6077 + GCAAUAUGAAUCCCAUGGAG 20 7662
    BCL11A-6078 - GGGAGCACGCCCCAUAUUAG 20 7663
    BCL11A-6079 - CAACCUGAUCCCGGAGAACG 20 7664
    BCL11A-3450 - GGAGGAAGAGGAGGACGACG 20 7665
    BCL11A-6080 + CUCCGAGGAGUGCUCCGACG 20 7666
    BCL11A-6081 - GAUCCCGGAGAACGGGGACG 20 7667
    BCL11A-6082 - GCAGUGGCUCGCCGGCUACG 20 7668
    BCL11A-6083 + GCAUGACUUGGACUUGACCG 20 7669
    BCL11A-6084 + CCUGAAGGGAUACCAACCCG 20 7670
    BCL11A-6085 - ACGGAAGUCCCCUGACCCCG 20 7671
    BCL11A-6086 + CUUUUUGGACAGGCCCCCCG 20 7672
    BCL11A-6087 - GCGCUUCUCCACACCGCCCG 20 7673
    BCL11A-6088 + CCCCGAGGCCGACUCGCCCG 20 7674
    BCL11A-6089 + ACUCGCCCGGGGAGCAGCCG 20 7675
    BCL11A-6090 - CGGCCACCUGGCCGAGGCCG 20 7676
    BCL11A-6091 + CGUGUUGGGCAUCGCGGCCG 20 7677
    BCL11A-6092 - GAUGGCACUGUUAAUGGCCG 20 7678
    BCL11A-6093 - UAAGCGCGGCCACCUGGCCG 20 7679
    BCL11A-6094 + GCGCAAACUCCCGUUCUCCG 20 7680
    BCL11A-6095 - CAGCAGCGCGCUCAAGUCCG 20 7681
    BCL11A-6096 + GUCGCUGGUGCCGGGUUCCG 20 7682
    BCL11A-6097 - CUGGGCGAGAAGCAUAAGCG 20 7683
    BCL11A-6098 - CUCCAUGCAGCACUUCAGCG 20 7684
    BCL11A-6099 + UGCUGGCCUGGGUGCACGCG 20 7685
    BCL11A-6100 + UGAAGGGAUACCAACCCGCG 20 7686
    BCL11A-6101 - CACCACGAGAACAGCUCGCG 20 7687
    BCL11A-6102 + GCAUGACGUCGGGCAGGGCG 20 7688
    BCL11A-6103 - CGAGAACAGCUCGCGGGGCG 20 7689
    BCL11A-6104 - GCGGGGCGCGGUCGUGGGCG 20 7690
    BCL11A-6105 + GUUCUCCGUGUUGGGCAUCG 20 7691
    BCL11A-6106 - CCCCGGGCGAGUCGGCCUCG 20 7692
    BCL11A-6107 - GCCACCACGAGAACAGCUCG 20 7693
    BCL11A-6108 - AGCUGGACGGAGGGAUCUCG 20 7694
    BCL11A-6109 + CGCCCCGCGAGCUGUUCUCG 20 7695
    BCL11A-6110 - CAGCUCGCGGGGCGCGGUCG 20 7696
    BCL11A-6111 + UCGGUGGUGGACUAAACAGG 20 7697
    BCL11A-6112 + GGCCCUCGGCCUCGGCCAGG 20 7698
    BCL11A-3451 - CGAGGAAGAGGAAGAAGAGG 20 7699
    BCL11A-3452 - GGAAGAAGAGGAGGAAGAGG 20 7700
    BCL11A-3445 - CGGGGACGAGGAGGAAGAGG 20 7701
    BCL11A-6113 + AAAGAGGUUGGAGACAGAGG 20 7702
    BCL11A-6114 + GGAGGGGCGGAUUGCAGAGG 20 7703
    BCL11A-6115 + AUAUGAAUCCCAUGGAGAGG 20 7704
    BCL11A-6116 + CGAGGAGUGCUCCGACGAGG 20 7705
    BCL11A-3330 - CCCGGAGAACGGGGACGAGG 20 7706
    BCL11A-3454 - AGAAGAGGAGGAAGAGGAGG 20 7707
    BCL11A-6117 + GAGGUUGGAGACAGAGGAGG 20 7708
    BCL11A-3455 - AGAGGAGGAAGAGGAGGAGG 20 7709
    BCL11A-6118 + CGGAUUGCAGAGGAGGGAGG 20 7710
    BCL11A-6119 + ACCGGGGGCUGGGAGGGAGG 20 7711
    BCL11A-6120 - CUUCGGGCUGAGCCUGGAGG 20 7712
    BCL11A-6121 - CCGCCCGGGGAGCUGGACGG 20 7713
    BCL11A-6122 + CAUGACUUGGACUUGACCGG 20 7714
    BCL11A-6123 + GUGUUGGGCAUCGCGGCCGG 20 7715
    BCL11A-6124 + GGCCGGCCUGGGGACAGCGG 20 7716
    BCL11A-6125 + GGGUUCCGGGGAGCUGGCGG 20 7717
    BCL11A-6126 + CCCCCAGGCGCUCUAUGCGG 20 7718
    BCL11A-6127 - CACUUGCGACGAAGACUCGG 20 7719
    BCL11A-6128 - CCCGGGCGAGUCGGCCUCGG 20 7720
    BCL11A-6129 + GGGUCCAAGUGAUGUCUCGG 20 7721
    BCL11A-6130 + GGGGGCGUCGCCAGGAAGGG 20 7722
    BCL11A-6131 + CGGUGGUGGACUAAACAGGG 20 7723
    BCL11A-6132 - GCUGACGGAGAGCGAGAGGG 20 7724
    BCL11A-6133 + GGGCGGAUUGCAGAGGAGGG 20 7725
    BCL11A-6134 + GGAUUGCAGAGGAGGGAGGG 20 7726
    BCL11A-6135 + UUGACCGGGGGCUGGGAGGG 20 7727
    BCL11A-6136 + CCUCCGUCCAGCUCCCCGGG 20 7728
    BCL11A-6137 + CUAGAGAAAUCCAUGGCGGG 20 7729
    BCL11A-6138 - CCGGGCGAGUCGGCCUCGGG 20 7730
    BCL11A-6139 + GGUGGUGGACUAAACAGGGG 20 7731
    BCL11A-6140 - AAAUUUGAAGCCCCCAGGGG 20 7732
    BCL11A-6141 + GGGCUGGGAGGGAGGAGGGG 20 7733
    BCL11A-6142 + GAUUGCAGAGGAGGGAGGGG 20 7734
    BCL11A-6143 - CCGCAUAGAGCGCCUGGGGG 20 7735
    BCL11A-6144 - UGAAGCCCCCAGGGGUGGGG 20 7736
    BCL11A-6145 + AAAGGCACUCGGGUGAUGGG 20 7737
    BCL11A-6146 + GGACUUGACCGGGGGCUGGG 20 7738
    BCL11A-6147 + CUAAACAGGGGGGGAGUGGG 20 7739
    BCL11A-6148 + CUGGGUACUACGCCGAAUGG 20 7740
    BCL11A-6149 + UCUCCUAGAGAAAUCCAUGG 20 7741
    BCL11A-6150 + GUCGGACUUGACCGUCAUGG 20 7742
    BCL11A-6151 - CAAAUUUCAGAGCAACCUGG 20 7743
    BCL11A-6152 + GCUUCUCGCCCAGGACCUGG 20 7744
    BCL11A-6153 - CGGCUUCGGGCUGAGCCUGG 20 7745
    BCL11A-6154 - CCACCGCAUAGAGCGCCUGG 20 7746
    BCL11A-6155 + GGGAUCUUUGAGCUGCCUGG 20 7747
    BCL11A-6156 + GCCGGGUUCCGGGGAGCUGG 20 7748
    BCL11A-6157 - CGCAGCGGCACGGGAAGUGG 20 7749
    BCL11A-6158 - CAGCGCGCUCAAGUCCGUGG 20 7750
    BCL11A-6159 + CCCGCGAGCUGUUCUCGUGG 20 7751
    BCL11A-6160 + CCAGGCGCUCUAUGCGGUGG 20 7752
    BCL11A-6161 + UCCAAGUGAUGUCUCGGUGG 20 7753
    BCL11A-6162 - ACCCGGCACCAGCGACUUGG 20 7754
    BCL11A-6163 + UCUGGGUACUACGCCGAAUG 20 7755
    BCL11A-6164 + CGUCGGACUUGACCGUCAUG 20 7756
    BCL11A-6165 + UGUGCAUGUGCGUCUUCAUG 20 7757
    BCL11A-6166 + GGGCCCGGACCACUAAUAUG 20 7758
    BCL11A-6167 + CCGCCCCCAGGCGCUCUAUG 20 7759
    BCL11A-6168 + UAACAGUGCCAUCGUCUAUG 20 7760
    BCL11A-6169 - AGCGACACUUGUGAGUACUG 20 7761
    BCL11A-6170 + CUUCGUCGCAAGUGUCCCUG 20 7762
    BCL11A-6171 - CCCACCGCAUAGAGCGCCUG 20 7763
    BCL11A-6172 + CAUAGGGCUGGGCCGGCCUG 20 7764
    BCL11A-6173 + AGAAGGGGCUCAGCGAGCUG 20 7765
    BCL11A-6174 - GUGCCUUUGACAGGGUGCUG 20 7766
    BCL11A-6175 - UCCAAGUCAUGCGAGUUCUG 20 7767
    BCL11A-6176 + UGUAGGGCUUCUCGCCCGUG 20 7768
    BCL11A-6177 + GUCCAGCUCCCCGGGCGGUG 20 7769
    BCL11A-6178 + CCCAGGCGCUCUAUGCGGUG 20 7770
    BCL11A-6179 - AUUUGAAGCCCCCAGGGGUG 20 7771
    BCL11A-6180 - CCCAGAGAGCUCAAGAUGUG 20 7772
    BCL11A-6181 + CGUUCUCCGGGAUCAGGUUG 20 7773
    BCL11A-6182 + CUCUGGGUACUACGCCGAAU 20 7774
    BCL11A-6183 + GCGGGAGGCUCCAUAGCCAU 20 7775
    BCL11A-6184 - CUUCCCAGCCACCUCUCCAU 20 7776
    BCL11A-6185 + GGUUGCAGUAACCUUUGCAU 20 7777
    BCL11A-6186 + UCGUCGGACUUGACCGUCAU 20 7778
    BCL11A-6187 + GUCAAAGGCACUCGGGUGAU 20 7779
    BCL11A-6188 + CGGGCCCGGACCACUAAUAU 20 7780
    BCL11A-6189 + GUCGUUCUCGCUCUUGAACU 20 7781
    BCL11A-6190 + AGCACCCUGUCAAAGGCACU 20 7782
    BCL11A-6191 - UCCACCACCGAGACAUCACU 20 7783
    BCL11A-6192 - GGACACUUGCGACGAAGACU 20 7784
    BCL11A-6193 - GGAACCCGGCACCAGCGACU 20 7785
    BCL11A-6194 - GUUGGUAUCCCUUCAGGACU 20 7786
    BCL11A-6195 + GCCGCAGAACUCGCAUGACU 20 7787
    BCL11A-6196 + GCAAGUGUCCCUGUGGCCCU 20 7788
    BCL11A-6197 - CCCCACCGCAUAGAGCGCCU 20 7789
    BCL11A-6198 + GCAUAGGGCUGGGCCGGCCU 20 7790
    BCL11A-6199 + GUCCCUGUGGCCCUCGGCCU 20 7791
    BCL11A-6200 - CUCCCCGGGCGAGUCGGCCU 20 7792
    BCL11A-6201 + GCGCUUCAGCUUGCUGGCCU 20 7793
    BCL11A-6202 - CUCCUCGUCGGAGCACUCCU 20 7794
    BCL11A-6203 - GAGGCCUUCCACCAGGUCCU 20 7795
    BCL11A-6204 + GAGAAGGGGCUCAGCGAGCU 20 7796
    BCL11A-6205 + CGUCUGCCCUCUUUUGAGCU 20 7797
    BCL11A-6206 + AGUAACCUUUGCAUAGGGCU 20 7798
    BCL11A-6207 + CUUGGACUUGACCGGGGGCU 20 7799
    BCL11A-6208 + AAUCCCAUGGAGAGGUGGCU 20 7800
    BCL11A-5508 + GUUGUACAUGUGUAGCUGCU 20 7801
    BCL11A-6209 - CUGUCCAAAAAGCUGCUGCU 20 7802
    BCL11A-6210 - GGAGCUGGACGGAGGGAUCU 20 7803
    BCL11A-6211 + CCACACAUCUUGAGCUCUCU 20 7804
    BCL11A-6212 - CUCCCGCCAUGGAUUUCUCU 20 7805
    BCL11A-6213 + UGGGGGUCCAAGUGAUGUCU 20 7806
    BCL11A-6214 - UCUGUCUCCAACCUCUUUCU 20 7807
    BCL11A-6215 - AGACUCGGUGGCCGGCGAGU 20 7808
    BCL11A-6216 - CGGCUGCUCCCCGGGCGAGU 20 7809
    BCL11A-6217 + GGACUAAACAGGGGGGGAGU 20 7810
    BCL11A-6218 + CACCAUGCCCUGCAUGACGU 20 7811
    BCL11A-6219 - CGGGGCGCGGUCGUGGGCGU 20 7812
    BCL11A-6220 - AUCGCCUUUUGCCUCCUCGU 20 7813
    BCL11A-6221 + GGCGGUGGAGAGACCGUCGU 20 7814
    BCL11A-6222 - AGCUCGCGGGGCGCGGUCGU 20 7815
    BCL11A-6223 + CCCGUUCUCCGGGAUCAGGU 20 7816
    BCL11A-6224 + UGAAGAACCUAGAAAGAGGU 20 7817
    BCL11A-6225 + GCCGGCCUGGGGACAGCGGU 20 7818
    BCL11A-6226 + CCCCAGGCGCUCUAUGCGGU 20 7819
    BCL11A-6227 - AGUCCCCUGACCCCGCGGGU 20 7820
    BCL11A-6228 - AAUUUGAAGCCCCCAGGGGU 20 7821
    BCL11A-6229 - CCCGGCACCAGCGACUUGGU 20 7822
    BCL11A-6230 - GCGACACUUGUGAGUACUGU 20 7823
    BCL11A-6231 + CGAGUACACGUUCUCCGUGU 20 7824
    BCL11A-6232 + GUCGCACAGGUUGCACUUGU 20 7825
    BCL11A-6233 - GUUCUUCACACACCCCCAUU 20 7826
    BCL11A-6234 - AAAGAUCCCUUCCUUAGCUU 20 7827
    BCL11A-6235 - GAGAGGGUGGACUACGGCUU 20 7828
    BCL11A-6236 + CCGUUCUCCGGGAUCAGGUU 20 7829
    BCL11A-6237 + GAGUACACGUUCUCCGUGUU 20 7830
    BCL11A-6238 + GCUGCCCAGCAGCAGCUUUU 20 7831
    BCL11A-6239 - UCAAGAUGUGUGGCAGUUUU 20 7832
  • Table 15D provides targeting domains for knocking out the BCL11A gene by dual targeting (e.g., dual single strand cleavages). In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B, or include a targeting domain from Group C and a second targeting domain from Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. Exemplary gRNA pairs to be used with S. pyogenes Cas9 are shown in Table 151D, e.g., BCL11A-5355 or BCL11A-5380 can be combined with BCL11A-5321 or BCL11A-5416; or BCL11A-5333, BCL11A-5354, or BCL11A-5329 can be combined with BCL11A-5367 or BCL11A-5341.
  • TABLE 15D
    Group A Group B
    BCL11A-5355, BCL11A-5321,
    BCL11A-5380 BCL11A-5416
    Group C Group D
    BCL11A-5333, BCL11A- BCL11A-5367,
    5354, BCL11A-5329 BCL11A-5341
  • Table 16A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 16A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-6240 + UGACCUGGAUGCCAACCUCCA 21 7833
    BCL11A-6241 + GUGACCUGGAUGCCAACCUCCA 22 7834
    BCL11A-6242 + CGUGACCUGGAUGCCAACCUCCA 23 7835
    BCL11A-6243 + GCGUGACCUGGAUGCCAACCUCCA 24 7836
    BCL11A-6244 + AUGCCAACCUCCACGGGA 18 7837
    BCL11A-6245 + GAUGCCAACCUCCACGGGA 19 7838
    BCL11A-6246 + GGAUGCCAACCUCCACGGGA 20 7839
    BCL11A-6247 + UGGAUGCCAACCUCCACGGGA 21 7840
    BCL11A-6248 + CUGGAUGCCAACCUCCACGGGA 22 7841
    BCL11A-6249 + CCUGGAUGCCAACCUCCACGGGA 23 7842
    BCL11A-6250 + ACCUGGAUGCCAACCUCCACGGGA 24 7843
    BCL11A-6251 + GUCAUCCUCUGGCGUGAC 18 7844
    BCL11A-6252 + CGUCAUCCUCUGGCGUGAC 19 7845
    BCL11A-6253 + UCGUCAUCCUCUGGCGUGAC 20 7846
    BCL11A-6254 + AUCGUCAUCCUCUGGCGUGAC 21 7847
    BCL11A-6255 + AAUCGUCAUCCUCUGGCGUGAC 22 7848
    BCL11A-6256 + CAAUCGUCAUCCUCUGGCGUGAC 23 7849
    BCL11A-6257 + ACAAUCGUCAUCCUCUGGCGUGAC 24 7850
    BCL11A-6258 + UUAUUGGGUUACUUACGC 18 7851
    BCL11A-6259 + AUUAUUGGGUUACUUACGC 19 7852
    BCL11A-6260 + UAUUAUUGGGUUACUUACGC 20 7853
    BCL11A-6261 + CUAUUAUUGGGUUACUUACGC 21 7854
    BCL11A-6262 + ACUAUUAUUGGGUUACUUACGC 22 7855
    BCL11A-6263 + UACUAUUAUUGGGUUACUUACGC 23 7856
    BCL11A-6264 + UUACUAUUAUUGGGUUACUUACGC 24 7857
    BCL11A-6265 + UCCCGUUUGCUUAAGUGC 18 7858
    BCL11A-6266 + UUCCCGUUUGCUUAAGUGC 19 7859
    BCL11A-5352 + AUUCCCGUUUGCUUAAGUGC 20 7860
    BCL11A-6267 + AAUUCCCGUUUGCUUAAGUGC 21 7861
    BCL11A-6268 + GAAUUCCCGUUUGCUUAAGUGC 22 7862
    BCL11A-6269 + AGAAUUCCCGUUUGCUUAAGUGC 23 7863
    BCL11A-6270 + GAGAAUUCCCGUUUGCUUAAGUGC 24 7864
    BCL11A-6271 + UUUGUGCUCGAUAAAAAU 18 7865
    BCL11A-6272 + GUUUGUGCUCGAUAAAAAU 19 7866
    BCL11A-6273 + CGUUUGUGCUCGAUAAAAAU 20 7867
    BCL11A-6274 + CCGUUUGUGCUCGAUAAAAAU 21 7868
    BCL11A-6275 + UCCGUUUGUGCUCGAUAAAAAU 22 7869
    BCL11A-6276 + UUCCGUUUGUGCUCGAUAAAAAU 23 7870
    BCL11A-6277 + UUUCCGUUUGUGCUCGAUAAAAAU 24 7871
    BCL11A-6278 + UGCACUCAUCCCAGGCGU 18 7872
    BCL11A-6279 + CUGCACUCAUCCCAGGCGU 19 7873
    BCL11A-5510 + UCUGCACUCAUCCCAGGCGU 20 7874
    BCL11A-6280 + UUCUGCACUCAUCCCAGGCGU 21 7875
    BCL11A-6281 + AUUCUGCACUCAUCCCAGGCGU 22 7876
    BCL11A-6282 + UAUUCUGCACUCAUCCCAGGCGU 23 7877
    BCL11A-6283 + AUAUUCUGCACUCAUCCCAGGCGU 24 7878
    BCL11A-6284 + GUCUGGUUCAUCAUCUGU 18 7879
    BCL11A-6285 + GGUCUGGUUCAUCAUCUGU 19 7880
    BCL11A-6286 + UGGUCUGGUUCAUCAUCUGU 20 7881
    BCL11A-6287 + GUGGUCUGGUUCAUCAUCUGU 21 7882
    BCL11A-6288 + CGUGGUCUGGUUCAUCAUCUGU 22 7883
    BCL11A-6289 + CCGUGGUCUGGUUCAUCAUCUGU 23 7884
    BCL11A-6290 + GCCGUGGUCUGGUUCAUCAUCUGU 24 7885
    BCL11A-6291 - CCGUUGGGAGCUCCAGAA 18 7886
    BCL11A-6292 - CCCGUUGGGAGCUCCAGAA 19 7887
    BCL11A-5447 - GCCCGUUGGGAGCUCCAGAA 20 7888
    BCL11A-6293 - GGCCCGUUGGGAGCUCCAGAA 21 7889
    BCL11A-6294 - CGGCCCGUUGGGAGCUCCAGAA 22 7890
    BCL11A-6295 - ACGGCCCGUUGGGAGCUCCAGAA 23 7891
    BCL11A-6296 - CACGGCCCGUUGGGAGCUCCAGAA 24 7892
    BCL11A-6297 - GGCAUCCAGGUCACGCCA 18 7893
    BCL11A-6298 - UGGCAUCCAGGUCACGCCA 19 7894
    BCL11A-6299 - UUGGCAUCCAGGUCACGCCA 20 7895
    BCL11A-6300 - GUUGGCAUCCAGGUCACGCCA 21 7896
    BCL11A-6301 - GGUUGGCAUCCAGGUCACGCCA 22 7897
    BCL11A-6302 - AGGUUGGCAUCCAGGUCACGCCA 23 7898
    BCL11A-6303 - GAGGUUGGCAUCCAGGUCACGCCA 24 7899
    BCL11A-6304 - AACCCCAGCACUUAAGCAAAC 21 7900
    BCL11A-6305 - AAACCCCAGCACUUAAGCAAAC 22 7901
    BCL11A-6306 - CAAACCCCAGCACUUAAGCAAAC 23 7902
    BCL11A-6307 - GCAAACCCCAGCACUUAAGCAAAC 24 7903
    BCL11A-6308 - AGCUCUAAUCCCCACGCC 18 7904
    BCL11A-6309 - GAGCUCUAAUCCCCACGCC 19 7905
    BCL11A-5350 - GGAGCUCUAAUCCCCACGCC 20 7906
    BCL11A-6310 - UGGAGCUCUAAUCCCCACGCC 21 7907
    BCL11A-6311 - AUGGAGCUCUAAUCCCCACGCC 22 7908
    BCL11A-6312 - CAUGGAGCUCUAAUCCCCACGCC 23 7909
    BCL11A-6313 - ACAUGGAGCUCUAAUCCCCACGCC 24 7910
    BCL11A-6314 - UUUAUCAACGUCAUCUAG 18 7911
    BCL11A-6315 - GUUUAUCAACGUCAUCUAG 19 7912
    BCL11A-5356 - UGUUUAUCAACGUCAUCUAG 20 7913
    BCL11A-6316 - UUGUUUAUCAACGUCAUCUAG 21 7914
    BCL11A-6317 - AUUGUUUAUCAACGUCAUCUAG 22 7915
    BCL11A-6318 - GAUUGUUUAUCAACGUCAUCUAG 23 7916
    BCL11A-6319 - CGAUUGUUUAUCAACGUCAUCUAG 24 7917
    BCL11A-6320 - AGUGCAGAAUAUGCCCCG 18 7918
    BCL11A-6321 - GAGUGCAGAAUAUGCCCCG 19 7919
    BCL11A-6322 - UGAGUGCAGAAUAUGCCCCG 20 7920
    BCL11A-6323 - AUGAGUGCAGAAUAUGCCCCG 21 7921
    BCL11A-6324 - GAUGAGUGCAGAAUAUGCCCCG 22 7922
    BCL11A-6325 - GGAUGAGUGCAGAAUAUGCCCCG 23 7923
    BCL11A-6326 - GGGAUGAGUGCAGAAUAUGCCCCG 24 7924
    BCL11A-6327 - CUAAUCCCCACGCCUGGG 18 7925
    BCL11A-6328 - UCUAAUCCCCACGCCUGGG 19 7926
    BCL11A-6329 - CUCUAAUCCCCACGCCUGGG 20 7927
    BCL11A-6330 - GCUCUAAUCCCCACGCCUGGG 21 7928
    BCL11A-6331 - AGCUCUAAUCCCCACGCCUGGG 22 7929
    BCL11A-6332 - GAGCUCUAAUCCCCACGCCUGGG 23 7930
    BCL11A-6333 - GGAGCUCUAAUCCCCACGCCUGGG 24 7931
    BCL11A-6334 - CCACGCCUGGGAUGAGUG 18 7932
    BCL11A-6335 - CCCACGCCUGGGAUGAGUG 19 7933
    BCL11A-6336 - CCCCACGCCUGGGAUGAGUG 20 7934
    BCL11A-6337 - UCCCCACGCCUGGGAUGAGUG 21 7935
    BCL11A-6338 - AUCCCCACGCCUGGGAUGAGUG 22 7936
    BCL11A-6339 - AAUCCCCACGCCUGGGAUGAGUG 23 7937
    BCL11A-6340 - UAAUCCCCACGCCUGGGAUGAGUG 24 7938
    BCL11A-6341 - CUCUGCUUAGAAAAAGCU 18 7939
    BCL11A-6342 - CCUCUGCUUAGAAAAAGCU 19 7940
    BCL11A-6343 - GCCUCUGCUUAGAAAAAGCU 20 7941
    BCL11A-6344 - AGCCUCUGCUUAGAAAAAGCU 21 7942
    BCL11A-6345 - CAGCCUCUGCUUAGAAAAAGCU 22 7943
    BCL11A-6346 - GCAGCCUCUGCUUAGAAAAAGCU 23 7944
    BCL11A-6347 - GGCAGCCUCUGCUUAGAAAAAGCU 24 7945
  • Table 16B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 16B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-6348 + CCUGGAUGCCAACCUCCA 18 7946
    BCL11A-6349 + ACCUGGAUGCCAACCUCCA 19 7947
    BCL11A-5450 + GACCUGGAUGCCAACCUCCA 20 7948
    BCL11A-6350 - CCCAGCACUUAAGCAAAC 18 7949
    BCL11A-6351 - CCCCAGCACUUAAGCAAAC 19 7950
    BCL11A-5458 - ACCCCAGCACUUAAGCAAAC 20 7951
  • Table 16C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 16C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-6352 + AAUAAGAAUGUCCCCCAA 18 7952
    BCL11A-6353 + AAAUAAGAAUGUCCCCCAA 19 7953
    BCL11A-5444 + AAAAUAAGAAUGUCCCCCAA 20 7954
    BCL11A-6354 + AAAAAUAAGAAUGUCCCCCAA 21 7955
    BCL11A-6355 + UAAAAAUAAGAAUGUCCCCCAA 22 7956
    BCL11A-6356 + AUAAAAAUAAGAAUGUCCCCCAA 23 7957
    BCL11A-6357 + GAUAAAAAUAAGAAUGUCCCCCAA 24 7958
    BCL11A-6358 + UUCAUCUCGAUUGGUGAA 18 7959
    BCL11A-6359 + UUUCAUCUCGAUUGGUGAA 19 7960
    BCL11A-5344 + UUUUCAUCUCGAUUGGUGAA 20 7961
    BCL11A-6360 + UUUUUCAUCUCGAUUGGUGAA 21 7962
    BCL11A-6361 + UUUUUUCAUCUCGAUUGGUGAA 22 7963
    BCL11A-6362 + CUUUUUUCAUCUCGAUUGGUGAA 23 7964
    BCL11A-6363 + GCUUUUUUCAUCUCGAUUGGUGAA 24 7965
    BCL11A-6364 + AAAUAAGAAUGUCCCCCA 18 7966
    BCL11A-6365 + AAAAUAAGAAUGUCCCCCA 19 7967
    BCL11A-6366 + AAAAAUAAGAAUGUCCCCCA 20 7968
    BCL11A-6367 + UAAAAAUAAGAAUGUCCCCCA 21 7969
    BCL11A-6368 + AUAAAAAUAAGAAUGUCCCCCA 22 7970
    BCL11A-6369 + GAUAAAAAUAAGAAUGUCCCCCA 23 7971
    BCL11A-6370 + CGAUAAAAAUAAGAAUGUCCCCCA 24 7972
    BCL11A-6371 + CCCCUUCUGGAGCUCCCA 18 7973
    BCL11A-6372 + UCCCCUUCUGGAGCUCCCA 19 7974
    BCL11A-6373 + AUCCCCUUCUGGAGCUCCCA 20 7975
    BCL11A-6374 + GAUCCCCUUCUGGAGCUCCCA 21 7976
    BCL11A-6375 + UGAUCCCCUUCUGGAGCUCCCA 22 7977
    BCL11A-6376 + AUGAUCCCCUUCUGGAGCUCCCA 23 7978
    BCL11A-6377 + CAUGAUCCCCUUCUGGAGCUCCCA 24 7979
    BCL11A-6378 + UAGAGCUCCAUGUGCAGA 18 7980
    BCL11A-6379 + UUAGAGCUCCAUGUGCAGA 19 7981
    BCL11A-6380 + AUUAGAGCUCCAUGUGCAGA 20 7982
    BCL11A-6381 + GAUUAGAGCUCCAUGUGCAGA 21 7983
    BCL11A-6382 + GGAUUAGAGCUCCAUGUGCAGA 22 7984
    BCL11A-6383 + GGGAUUAGAGCUCCAUGUGCAGA 23 7985
    BCL11A-6384 + GGGGAUUAGAGCUCCAUGUGCAGA 24 7986
    BCL11A-6385 + GCUCCAUGUGCAGAACGA 18 7987
    BCL11A-6386 + AGCUCCAUGUGCAGAACGA 19 7988
    BCL11A-5347 + GAGCUCCAUGUGCAGAACGA 20 7989
    BCL11A-6387 + AGAGCUCCAUGUGCAGAACGA 21 7990
    BCL11A-6388 + UAGAGCUCCAUGUGCAGAACGA 22 7991
    BCL11A-6389 + UUAGAGCUCCAUGUGCAGAACGA 23 7992
    BCL11A-6390 + AUUAGAGCUCCAUGUGCAGAACGA 24 7993
    BCL11A-6391 + UUUCAUCUCGAUUGGUGA 18 7994
    BCL11A-6392 + UUUUCAUCUCGAUUGGUGA 19 7995
    BCL11A-5456 + UUUUUCAUCUCGAUUGGUGA 20 7996
    BCL11A-6393 + UUUUUUCAUCUCGAUUGGUGA 21 7997
    BCL11A-6394 + CUUUUUUCAUCUCGAUUGGUGA 22 7998
    BCL11A-6395 + GCUUUUUUCAUCUCGAUUGGUGA 23 7999
    BCL11A-6396 + UGCUUUUUUCAUCUCGAUUGGUGA 24 8000
    BCL11A-6397 + GCAGAAGUUUAUCUGUGA 18 8001
    BCL11A-6398 + UGCAGAAGUUUAUCUGUGA 19 8002
    BCL11A-6399 + GUGCAGAAGUUUAUCUGUGA 20 8003
    BCL11A-6400 + AGUGCAGAAGUUUAUCUGUGA 21 8004
    BCL11A-6401 + CAGUGCAGAAGUUUAUCUGUGA 22 8005
    BCL11A-6402 + CCAGUGCAGAAGUUUAUCUGUGA 23 8006
    BCL11A-6403 + UCCAGUGCAGAAGUUUAUCUGUGA 24 8007
    BCL11A-6404 + GAGCUCCAUGUGCAGAAC 18 8008
    BCL11A-6405 + AGAGCUCCAUGUGCAGAAC 19 8009
    BCL11A-6406 + UAGAGCUCCAUGUGCAGAAC 20 8010
    BCL11A-6407 + UUAGAGCUCCAUGUGCAGAAC 21 8011
    BCL11A-6408 + AUUAGAGCUCCAUGUGCAGAAC 22 8012
    BCL11A-6409 + GAUUAGAGCUCCAUGUGCAGAAC 23 8013
    BCL11A-6410 + GGAUUAGAGCUCCAUGUGCAGAAC 24 8014
    BCL11A-6411 + UAUUAUUGGGUUACUUAC 18 8015
    BCL11A-6412 + CUAUUAUUGGGUUACUUAC 19 8016
    BCL11A-6413 + ACUAUUAUUGGGUUACUUAC 20 8017
    BCL11A-6414 + UACUAUUAUUGGGUUACUUAC 21 8018
    BCL11A-6415 + UUACUAUUAUUGGGUUACUUAC 22 8019
    BCL11A-6416 + AUUACUAUUAUUGGGUUACUUAC 23 8020
    BCL11A-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 8021
    BCL11A-6418 + ACCUGGAUGCCAACCUCC 18 8022
    BCL11A-6419 + GACCUGGAUGCCAACCUCC 19 8023
    BCL11A-6420 + UGACCUGGAUGCCAACCUCC 20 8024
    BCL11A-6421 + GUGACCUGGAUGCCAACCUCC 21 8025
    BCL11A-6422 + CGUGACCUGGAUGCCAACCUCC 22 8026
    BCL11A-6423 + GCGUGACCUGGAUGCCAACCUCC 23 8027
    BCL11A-6424 + GGCGUGACCUGGAUGCCAACCUCC 24 8028
    BCL11A-6425 + UCUGCACUCAUCCCAGGC 18 8029
    BCL11A-6426 + UUCUGCACUCAUCCCAGGC 19 8030
    BCL11A-6427 + AUUCUGCACUCAUCCCAGGC 20 8031
    BCL11A-6428 + UAUUCUGCACUCAUCCCAGGC 21 8032
    BCL11A-6429 + AUAUUCUGCACUCAUCCCAGGC 22 8033
    BCL11A-6430 + CAUAUUCUGCACUCAUCCCAGGC 23 8034
    BCL11A-6431 + GCAUAUUCUGCACUCAUCCCAGGC 24 8035
    BCL11A-6432 + GAGGUCAUGAUCCCCUUC 18 8036
    BCL11A-6433 + GGAGGUCAUGAUCCCCUUC 19 8037
    BCL11A-5471 + AGGAGGUCAUGAUCCCCUUC 20 8038
    BCL11A-6434 + GAGGAGGUCAUGAUCCCCUUC 21 8039
    BCL11A-6435 + UGAGGAGGUCAUGAUCCCCUUC 22 8040
    BCL11A-6436 + GUGAGGAGGUCAUGAUCCCCUUC 23 8041
    BCL11A-6437 + GGUGAGGAGGUCAUGAUCCCCUUC 24 8042
    BCL11A-6438 + AUCUGUAAGAAUGGCUUC 18 8043
    BCL11A-6439 + CAUCUGUAAGAAUGGCUUC 19 8044
    BCL11A-6440 + UCAUCUGUAAGAAUGGCUUC 20 8045
    BCL11A-6441 + AUCAUCUGUAAGAAUGGCUUC 21 8046
    BCL11A-6442 + CAUCAUCUGUAAGAAUGGCUUC 22 8047
    BCL11A-6443 + UCAUCAUCUGUAAGAAUGGCUUC 23 8048
    BCL11A-6444 + UUCAUCAUCUGUAAGAAUGGCUUC 24 8049
    BCL11A-6445 + UCAUCUCGAUUGGUGAAG 18 8050
    BCL11A-6446 + UUCAUCUCGAUUGGUGAAG 19 8051
    BCL11A-5355 + UUUCAUCUCGAUUGGUGAAG 20 8052
    BCL11A-6447 + UUUUCAUCUCGAUUGGUGAAG 21 8053
    BCL11A-6448 + UUUUUCAUCUCGAUUGGUGAAG 22 8054
    BCL11A-6449 + UUUUUUCAUCUCGAUUGGUGAAG 23 8055
    BCL11A-6450 + CUUUUUUCAUCUCGAUUGGUGAAG 24 8056
    BCL11A-6451 + UCCACAGCUUUUUCUAAG 18 8057
    BCL11A-6452 + AUCCACAGCUUUUUCUAAG 19 8058
    BCL11A-6453 + UAUCCACAGCUUUUUCUAAG 20 8059
    BCL11A-6454 + UUAUCCACAGCUUUUUCUAAG 21 8060
    BCL11A-6455 + CUUAUCCACAGCUUUUUCUAAG 22 8061
    BCL11A-6456 + GCUUAUCCACAGCUUUUUCUAAG 23 8062
    BCL11A-6457 + GGCUUAUCCACAGCUUUUUCUAAG 24 8063
    BCL11A-6458 + AUCUGGCACUGCCCACAG 18 8064
    BCL11A-6459 + CAUCUGGCACUGCCCACAG 19 8065
    BCL11A-6460 + UCAUCUGGCACUGCCCACAG 20 8066
    BCL11A-6461 + UUCAUCUGGCACUGCCCACAG 21 8067
    BCL11A-6462 + GUUCAUCUGGCACUGCCCACAG 22 8068
    BCL11A-6463 + AGUUCAUCUGGCACUGCCCACAG 23 8069
    BCL11A-6464 + AAGUUCAUCUGGCACUGCCCACAG 24 8070
    BCL11A-6465 + CUCCAUGUGCAGAACGAG 18 8071
    BCL11A-6466 + GCUCCAUGUGCAGAACGAG 19 8072
    BCL11A-5476 + AGCUCCAUGUGCAGAACGAG 20 8073
    BCL11A-6467 + GAGCUCCAUGUGCAGAACGAG 21 8074
    BCL11A-6468 + AGAGCUCCAUGUGCAGAACGAG 22 8075
    BCL11A-6469 + UAGAGCUCCAUGUGCAGAACGAG 23 8076
    BCL11A-6470 + UUAGAGCUCCAUGUGCAGAACGAG 24 8077
    BCL11A-6471 + UGUGCAGAACGAGGGGAG 18 8078
    BCL11A-6472 + AUGUGCAGAACGAGGGGAG 19 8079
    BCL11A-6473 + CAUGUGCAGAACGAGGGGAG 20 8080
    BCL11A-6474 + CCAUGUGCAGAACGAGGGGAG 21 8081
    BCL11A-6475 + UCCAUGUGCAGAACGAGGGGAG 22 8082
    BCL11A-6476 + CUCCAUGUGCAGAACGAGGGGAG 23 8083
    BCL11A-6477 + GCUCCAUGUGCAGAACGAGGGGAG 24 8084
    BCL11A-6478 + AGCUCCAUGUGCAGAACG 18 8085
    BCL11A-6479 + GAGCUCCAUGUGCAGAACG 19 8086
    BCL11A-5357 + AGAGCUCCAUGUGCAGAACG 20 8087
    BCL11A-6480 + UAGAGCUCCAUGUGCAGAACG 21 8088
    BCL11A-6481 + UUAGAGCUCCAUGUGCAGAACG 22 8089
    BCL11A-6482 + AUUAGAGCUCCAUGUGCAGAACG 23 8090
    BCL11A-6483 + GAUUAGAGCUCCAUGUGCAGAACG 24 8091
    BCL11A-6484 + CUGCACUCAUCCCAGGCG 18 8092
    BCL11A-6485 + UCUGCACUCAUCCCAGGCG 19 8093
    BCL11A-5480 + UUCUGCACUCAUCCCAGGCG 20 8094
    BCL11A-6486 + AUUCUGCACUCAUCCCAGGCG 21 8095
    BCL11A-6487 + UAUUCUGCACUCAUCCCAGGCG 22 8096
    BCL11A-6488 + AUAUUCUGCACUCAUCCCAGGCG 23 8097
    BCL11A-6489 + CAUAUUCUGCACUCAUCCCAGGCG 24 8098
    BCL11A-6490 + GGGUUUGCCUUGCUUGCG 18 8099
    BCL11A-6491 + GGGGUUUGCCUUGCUUGCG 19 8100
    BCL11A-6492 + UGGGGUUUGCCUUGCUUGCG 20 8101
    BCL11A-6493 + CUGGGGUUUGCCUUGCUUGCG 21 8102
    BCL11A-6494 + GCUGGGGUUUGCCUUGCUUGCG 22 8103
    BCL11A-6495 + UGCUGGGGUUUGCCUUGCUUGCG 23 8104
    BCL11A-6496 + GUGCUGGGGUUUGCCUUGCUUGCG 24 8105
    BCL11A-6497 + CCAUGUGCAGAACGAGGG 18 8106
    BCL11A-6498 + UCCAUGUGCAGAACGAGGG 19 8107
    BCL11A-6499 + CUCCAUGUGCAGAACGAGGG 20 8108
    BCL11A-6500 + GCUCCAUGUGCAGAACGAGGG 21 8109
    BCL11A-6501 + AGCUCCAUGUGCAGAACGAGGG 22 8110
    BCL11A-6502 + GAGCUCCAUGUGCAGAACGAGGG 23 8111
    BCL11A-6503 + AGAGCUCCAUGUGCAGAACGAGGG 24 8112
    BCL11A-6504 + GACAUGGUGGGCUGCGGG 18 8113
    BCL11A-6505 + AGACAUGGUGGGCUGCGGG 19 8114
    BCL11A-6506 + GAGACAUGGUGGGCUGCGGG 20 8115
    BCL11A-6507 + CGAGACAUGGUGGGCUGCGGG 21 8116
    BCL11A-6508 + GCGAGACAUGGUGGGCUGCGGG 22 8117
    BCL11A-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 8118
    BCL11A-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 8119
    BCL11A-6511 + CAUGUGCAGAACGAGGGG 18 8120
    BCL11A-6512 + CCAUGUGCAGAACGAGGGG 19 8121
    BCL11A-5488 + UCCAUGUGCAGAACGAGGGG 20 8122
    BCL11A-6513 + CUCCAUGUGCAGAACGAGGGG 21 8123
    BCL11A-6514 + GCUCCAUGUGCAGAACGAGGGG 22 8124
    BCL11A-6515 + AGCUCCAUGUGCAGAACGAGGGG 23 8125
    BCL11A-6516 + GAGCUCCAUGUGCAGAACGAGGGG 24 8126
    BCL11A-6517 + CAAGAGGCUCGGCUGUGG 18 8127
    BCL11A-6518 + UCAAGAGGCUCGGCUGUGG 19 8128
    BCL11A-6519 + UUCAAGAGGCUCGGCUGUGG 20 8129
    BCL11A-6520 + CUUCAAGAGGCUCGGCUGUGG 21 8130
    BCL11A-6521 + GCUUCAAGAGGCUCGGCUGUGG 22 8131
    BCL11A-6522 + GGCUUCAAGAGGCUCGGCUGUGG 23 8132
    BCL11A-6523 + UGGCUUCAAGAGGCUCGGCUGUGG 24 8133
    BCL11A-6524 + UGCUUGCGGCGAGACAUG 18 8134
    BCL11A-6525 + UUGCUUGCGGCGAGACAUG 19 8135
    BCL11A-6526 + CUUGCUUGCGGCGAGACAUG 20 8136
    BCL11A-6527 + CCUUGCUUGCGGCGAGACAUG 21 8137
    BCL11A-6528 + GCCUUGCUUGCGGCGAGACAUG 22 8138
    BCL11A-6529 + UGCCUUGCUUGCGGCGAGACAUG 23 8139
    BCL11A-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 8140
    BCL11A-6531 + CAACUUACAAAUACCCUG 18 8141
    BCL11A-6532 + UCAACUUACAAAUACCCUG 19 8142
    BCL11A-5494 + CUCAACUUACAAAUACCCUG 20 8143
    BCL11A-6533 + GCUCAACUUACAAAUACCCUG 21 8144
    BCL11A-6534 + GGCUCAACUUACAAAUACCCUG 22 8145
    BCL11A-6535 + AGGCUCAACUUACAAAUACCCUG 23 8146
    BCL11A-6536 + AAGGCUCAACUUACAAAUACCCUG 24 8147
    BCL11A-6537 + GUUGUACAUGUGUAGCUG 18 8148
    BCL11A-6538 + AGUUGUACAUGUGUAGCUG 19 8149
    BCL11A-6539 + AAGUUGUACAUGUGUAGCUG 20 8150
    BCL11A-6540 + CAAGUUGUACAUGUGUAGCUG 21 8151
    BCL11A-6541 + GCAAGUUGUACAUGUGUAGCUG 22 8152
    BCL11A-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 8153
    BCL11A-6543 + UUGCAAGUUGUACAUGUGUAGCUG 24 8154
    BCL11A-6544 + GCGAGACAUGGUGGGCUG 18 8155
    BCL11A-6545 + GGCGAGACAUGGUGGGCUG 19 8156
    BCL11A-5361 + CGGCGAGACAUGGUGGGCUG 20 8157
    BCL11A-6546 + GCGGCGAGACAUGGUGGGCUG 21 8158
    BCL11A-6547 + UGCGGCGAGACAUGGUGGGCUG 22 8159
    BCL11A-6548 + UUGCGGCGAGACAUGGUGGGCUG 23 8160
    BCL11A-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 8161
    BCL11A-6550 + UUCCCGUUUGCUUAAGUG 18 8162
    BCL11A-6551 + AUUCCCGUUUGCUUAAGUG 19 8163
    BCL11A-6552 + AAUUCCCGUUUGCUUAAGUG 20 8164
    BCL11A-6553 + GAAUUCCCGUUUGCUUAAGUG 21 8165
    BCL11A-6554 + AGAAUUCCCGUUUGCUUAAGUG 22 8166
    BCL11A-6555 + GAGAAUUCCCGUUUGCUUAAGUG 23 8167
    BCL11A-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 8168
    BCL11A-6557 + GGAGAGGCCCCUCCAGUG 18 8169
    BCL11A-6558 + AGGAGAGGCCCCUCCAGUG 19 8170
    BCL11A-6559 + GAGGAGAGGCCCCUCCAGUG 20 8171
    BCL11A-6560 + GGAGGAGAGGCCCCUCCAGUG 21 8172
    BCL11A-6561 + GGGAGGAGAGGCCCCUCCAGUG 22 8173
    BCL11A-6562 + GGGGAGGAGAGGCCCCUCCAGUG 23 8174
    BCL11A-6563 + AGGGGAGGAGAGGCCCCUCCAGUG 24 8175
    BCL11A-6564 + UGGCACUGCCCACAGGUG 18 8176
    BCL11A-6565 + CUGGCACUGCCCACAGGUG 19 8177
    BCL11A-5498 + UCUGGCACUGCCCACAGGUG 20 8178
    BCL11A-6566 + AUCUGGCACUGCCCACAGGUG 21 8179
    BCL11A-6567 + CAUCUGGCACUGCCCACAGGUG 22 8180
    BCL11A-6568 + UCAUCUGGCACUGCCCACAGGUG 23 8181
    BCL11A-6569 + UUCAUCUGGCACUGCCCACAGGUG 24 8182
    BCL11A-6570 + UUUUCAUCUCGAUUGGUG 18 8183
    BCL11A-6571 + UUUUUCAUCUCGAUUGGUG 19 8184
    BCL11A-6572 + UUUUUUCAUCUCGAUUGGUG 20 8185
    BCL11A-6573 + CUUUUUUCAUCUCGAUUGGUG 21 8186
    BCL11A-6574 + GCUUUUUUCAUCUCGAUUGGUG 22 8187
    BCL11A-6575 + UGCUUUUUUCAUCUCGAUUGGUG 23 8188
    BCL11A-6576 + AUGCUUUUUUCAUCUCGAUUGGUG 24 8189
    BCL11A-6577 + GGAUUAGAGCUCCAUGUG 18 8190
    BCL11A-6578 + GGGAUUAGAGCUCCAUGUG 19 8191
    BCL11A-6579 + GGGGAUUAGAGCUCCAUGUG 20 8192
    BCL11A-6580 + UGGGGAUUAGAGCUCCAUGUG 21 8193
    BCL11A-6581 + GUGGGGAUUAGAGCUCCAUGUG 22 8194
    BCL11A-6582 + CGUGGGGAUUAGAGCUCCAUGUG 23 8195
    BCL11A-6583 + GCGUGGGGAUUAGAGCUCCAUGUG 24 8196
    BCL11A-6584 + CUUUUUUCAUCUCGAUUG 18 8197
    BCL11A-6585 + GCUUUUUUCAUCUCGAUUG 19 8198
    BCL11A-6586 + UGCUUUUUUCAUCUCGAUUG 20 8199
    BCL11A-6587 + AUGCUUUUUUCAUCUCGAUUG 21 8200
    BCL11A-6588 + GAUGCUUUUUUCAUCUCGAUUG 22 8201
    BCL11A-6589 + GGAUGCUUUUUUCAUCUCGAUUG 23 8202
    BCL11A-6590 + UGGAUGCUUUUUUCAUCUCGAUUG 24 8203
    BCL11A-6591 + GAGGCUCGGCUGUGGUUG 18 8204
    BCL11A-6592 + AGAGGCUCGGCUGUGGUUG 19 8205
    BCL11A-6593 + AAGAGGCUCGGCUGUGGUUG 20 8206
    BCL11A-6594 + CAAGAGGCUCGGCUGUGGUUG 21 8207
    BCL11A-6595 + UCAAGAGGCUCGGCUGUGGUUG 22 8208
    BCL11A-6596 + UUCAAGAGGCUCGGCUGUGGUUG 23 8209
    BCL11A-6597 + CUUCAAGAGGCUCGGCUGUGGUUG 24 8210
    BCL11A-6598 + AUAAGAAUGUCCCCCAAU 18 8211
    BCL11A-6599 + AAUAAGAAUGUCCCCCAAU 19 8212
    BCL11A-5502 + AAAUAAGAAUGUCCCCCAAU 20 8213
    BCL11A-6600 + AAAAUAAGAAUGUCCCCCAAU 21 8214
    BCL11A-6601 + AAAAAUAAGAAUGUCCCCCAAU 22 8215
    BCL11A-6602 + UAAAAAUAAGAAUGUCCCCCAAU 23 8216
    BCL11A-6603 + AUAAAAAUAAGAAUGUCCCCCAAU 24 8217
    BCL11A-6604 + CAUCCCAGGCGUGGGGAU 18 8218
    BCL11A-6605 + UCAUCCCAGGCGUGGGGAU 19 8219
    BCL11A-6606 + CUCAUCCCAGGCGUGGGGAU 20 8220
    BCL11A-6607 + ACUCAUCCCAGGCGUGGGGAU 21 8221
    BCL11A-6608 + CACUCAUCCCAGGCGUGGGGAU 22 8222
    BCL11A-6609 + GCACUCAUCCCAGGCGUGGGGAU 23 8223
    BCL11A-6610 + UGCACUCAUCCCAGGCGUGGGGAU 24 8224
    BCL11A-6611 + UCAACUUACAAAUACCCU 18 8225
    BCL11A-6612 + CUCAACUUACAAAUACCCU 19 8226
    BCL11A-6613 + GCUCAACUUACAAAUACCCU 20 8227
    BCL11A-6614 + GGCUCAACUUACAAAUACCCU 21 8228
    BCL11A-6615 + AGGCUCAACUUACAAAUACCCU 22 8229
    BCL11A-6616 + AAGGCUCAACUUACAAAUACCCU 23 8230
    BCL11A-6617 + UAAGGCUCAACUUACAAAUACCCU 24 8231
    BCL11A-6618 + GGCGAGACAUGGUGGGCU 18 8232
    BCL11A-6619 + CGGCGAGACAUGGUGGGCU 19 8233
    BCL11A-6620 + GCGGCGAGACAUGGUGGGCU 20 8234
    BCL11A-6621 + UGCGGCGAGACAUGGUGGGCU 21 8235
    BCL11A-6622 + UUGCGGCGAGACAUGGUGGGCU 22 8236
    BCL11A-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 8237
    BCL11A-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 8238
    BCL11A-6625 + CAGUGCAGAAGUUUAUCU 18 8239
    BCL11A-6626 + CCAGUGCAGAAGUUUAUCU 19 8240
    BCL11A-6627 + UCCAGUGCAGAAGUUUAUCU 20 8241
    BCL11A-6628 + CUCCAGUGCAGAAGUUUAUCU 21 8242
    BCL11A-6629 + CCUCCAGUGCAGAAGUUUAUCU 22 8243
    BCL11A-6630 + CCCUCCAGUGCAGAAGUUUAUCU 23 8244
    BCL11A-6631 + CCCCUCCAGUGCAGAAGUUUAUCU 24 8245
    BCL11A-6632 + CUGGCACUGCCCACAGGU 18 8246
    BCL11A-6633 + UCUGGCACUGCCCACAGGU 19 8247
    BCL11A-6634 + AUCUGGCACUGCCCACAGGU 20 8248
    BCL11A-6635 + CAUCUGGCACUGCCCACAGGU 21 8249
    BCL11A-6636 + UCAUCUGGCACUGCCCACAGGU 22 8250
    BCL11A-6637 + UUCAUCUGGCACUGCCCACAGGU 23 8251
    BCL11A-6638 + GUUCAUCUGGCACUGCCCACAGGU 24 8252
    BCL11A-6639 + AAGAGGCUCGGCUGUGGU 18 8253
    BCL11A-6640 + CAAGAGGCUCGGCUGUGGU 19 8254
    BCL11A-5366 + UCAAGAGGCUCGGCUGUGGU 20 8255
    BCL11A-6641 + UUCAAGAGGCUCGGCUGUGGU 21 8256
    BCL11A-6642 + CUUCAAGAGGCUCGGCUGUGGU 22 8257
    BCL11A-6643 + GCUUCAAGAGGCUCGGCUGUGGU 23 8258
    BCL11A-6644 + GGCUUCAAGAGGCUCGGCUGUGGU 24 8259
    BCL11A-6645 + CCUGCUAUGUGUUCCUGU 18 8260
    BCL11A-6646 + ACCUGCUAUGUGUUCCUGU 19 8261
    BCL11A-6647 + UACCUGCUAUGUGUUCCUGU 20 8262
    BCL11A-6648 + UUACCUGCUAUGUGUUCCUGU 21 8263
    BCL11A-6649 + UUUACCUGCUAUGUGUUCCUGU 22 8264
    BCL11A-6650 + AUUUACCUGCUAUGUGUUCCUGU 23 8265
    BCL11A-6651 + CAUUUACCUGCUAUGUGUUCCUGU 24 8266
    BCL11A-6652 + GGAGGUCAUGAUCCCCUU 18 8267
    BCL11A-6653 + AGGAGGUCAUGAUCCCCUU 19 8268
    BCL11A-6654 + GAGGAGGUCAUGAUCCCCUU 20 8269
    BCL11A-6655 + UGAGGAGGUCAUGAUCCCCUU 21 8270
    BCL11A-6656 + GUGAGGAGGUCAUGAUCCCCUU 22 8271
    BCL11A-6657 + GGUGAGGAGGUCAUGAUCCCCUU 23 8272
    BCL11A-6658 + AGGUGAGGAGGUCAUGAUCCCCUU 24 8273
    BCL11A-6659 + CUGCUAUGUGUUCCUGUU 18 8274
    BCL11A-6660 + CCUGCUAUGUGUUCCUGUU 19 8275
    BCL11A-5513 + ACCUGCUAUGUGUUCCUGUU 20 8276
    BCL11A-6661 + UACCUGCUAUGUGUUCCUGUU 21 8277
    BCL11A-6662 + UUACCUGCUAUGUGUUCCUGUU 22 8278
    BCL11A-6663 + UUUACCUGCUAUGUGUUCCUGUU 23 8279
    BCL11A-6664 + AUUUACCUGCUAUGUGUUCCUGUU 24 8280
    BCL11A-6665 - AUUUUUAUCGAGCACAAA 18 8281
    BCL11A-6666 - UAUUUUUAUCGAGCACAAA 19 8282
    BCL11A-5342 - UUAUUUUUAUCGAGCACAAA 20 8283
    BCL11A-6667 - CUUAUUUUUAUCGAGCACAAA 21 8284
    BCL11A-6668 - UCUUAUUUUUAUCGAGCACAAA 22 8285
    BCL11A-6669 - UUCUUAUUUUUAUCGAGCACAAA 23 8286
    BCL11A-6670 - AUUCUUAUUUUUAUCGAGCACAAA 24 8287
    BCL11A-6671 - AGAGGAAUUUGCCCCAAA 18 8288
    BCL11A-6672 - UAGAGGAAUUUGCCCCAAA 19 8289
    BCL11A-6673 - CUAGAGGAAUUUGCCCCAAA 20 8290
    BCL11A-6674 - UCUAGAGGAAUUUGCCCCAAA 21 8291
    BCL11A-6675 - AUCUAGAGGAAUUUGCCCCAAA 22 8292
    BCL11A-6676 - CAUCUAGAGGAAUUUGCCCCAAA 23 8293
    BCL11A-6677 - UCAUCUAGAGGAAUUUGCCCCAAA 24 8294
    BCL11A-6678 - CCCCAGCACUUAAGCAAA 18 8295
    BCL11A-6679 - ACCCCAGCACUUAAGCAAA 19 8296
    BCL11A-5443 - AACCCCAGCACUUAAGCAAA 20 8297
    BCL11A-6680 - AAACCCCAGCACUUAAGCAAA 21 8298
    BCL11A-6681 - CAAACCCCAGCACUUAAGCAAA 22 8299
    BCL11A-6682 - GCAAACCCCAGCACUUAAGCAAA 23 8300
    BCL11A-6683 - GGCAAACCCCAGCACUUAAGCAAA 24 8301
    BCL11A-6684 - UAUUUUUAUCGAGCACAA 18 8302
    BCL11A-6685 - UUAUUUUUAUCGAGCACAA 19 8303
    BCL11A-6686 - CUUAUUUUUAUCGAGCACAA 20 8304
    BCL11A-6687 - UCUUAUUUUUAUCGAGCACAA 21 8305
    BCL11A-6688 - UUCUUAUUUUUAUCGAGCACAA 22 8306
    BCL11A-6689 - AUUCUUAUUUUUAUCGAGCACAA 23 8307
    BCL11A-6690 - CAUUCUUAUUUUUAUCGAGCACAA 24 8308
    BCL11A-6691 - CACCUUCCCCUUCACCAA 18 8309
    BCL11A-6692 - CCACCUUCCCCUUCACCAA 19 8310
    BCL11A-6693 - GCCACCUUCCCCUUCACCAA 20 8311
    BCL11A-6694 - AGCCACCUUCCCCUUCACCAA 21 8312
    BCL11A-6695 - AAGCCACCUUCCCCUUCACCAA 22 8313
    BCL11A-6696 - UAAGCCACCUUCCCCUUCACCAA 23 8314
    BCL11A-6697 - AUAAGCCACCUUCCCCUUCACCAA 24 8315
    BCL11A-6698 - ACCCCAGCACUUAAGCAA 18 8316
    BCL11A-6699 - AACCCCAGCACUUAAGCAA 19 8317
    BCL11A-6700 - AAACCCCAGCACUUAAGCAA 20 8318
    BCL11A-6701 - CAAACCCCAGCACUUAAGCAA 21 8319
    BCL11A-6702 - GCAAACCCCAGCACUUAAGCAA 22 8320
    BCL11A-6703 - GGCAAACCCCAGCACUUAAGCAA 23 8321
    BCL11A-6704 - AGGCAAACCCCAGCACUUAAGCAA 24 8322
    BCL11A-6705 - GGAACACAUAGCAGGUAA 18 8323
    BCL11A-6706 - AGGAACACAUAGCAGGUAA 19 8324
    BCL11A-6707 - CAGGAACACAUAGCAGGUAA 20 8325
    BCL11A-6708 - ACAGGAACACAUAGCAGGUAA 21 8326
    BCL11A-6709 - AACAGGAACACAUAGCAGGUAA 22 8327
    BCL11A-6710 - AAACAGGAACACAUAGCAGGUAA 23 8328
    BCL11A-6711 - CAAACAGGAACACAUAGCAGGUAA 24 8329
    BCL11A-6712 - CUCCCCUCGUUCUGCACA 18 8330
    BCL11A-6713 - CCUCCCCUCGUUCUGCACA 19 8331
    BCL11A-5448 - UCCUCCCCUCGUUCUGCACA 20 8332
    BCL11A-6714 - CUCCUCCCCUCGUUCUGCACA 21 8333
    BCL11A-6715 - UCUCCUCCCCUCGUUCUGCACA 22 8334
    BCL11A-6716 - CUCUCCUCCCCUCGUUCUGCACA 23 8335
    BCL11A-6717 - CCUCUCCUCCCCUCGUUCUGCACA 24 8336
    BCL11A-6718 - UGCCAGAUGAACUUCCCA 18 8337
    BCL11A-6719 - GUGCCAGAUGAACUUCCCA 19 8338
    BCL11A-6720 - AGUGCCAGAUGAACUUCCCA 20 8339
    BCL11A-6721 - CAGUGCCAGAUGAACUUCCCA 21 8340
    BCL11A-6722 - GCAGUGCCAGAUGAACUUCCCA 22 8341
    BCL11A-6723 - GGCAGUGCCAGAUGAACUUCCCA 23 8342
    BCL11A-6724 - GGGCAGUGCCAGAUGAACUUCCCA 24 8343
    BCL11A-6725 - GCAGGUAAAUGAGAAGCA 18 8344
    BCL11A-6726 - AGCAGGUAAAUGAGAAGCA 19 8345
    BCL11A-5451 - UAGCAGGUAAAUGAGAAGCA 20 8346
    BCL11A-6727 - AUAGCAGGUAAAUGAGAAGCA 21 8347
    BCL11A-6728 - CAUAGCAGGUAAAUGAGAAGCA 22 8348
    BCL11A-6729 - ACAUAGCAGGUAAAUGAGAAGCA 23 8349
    BCL11A-6730 - CACAUAGCAGGUAAAUGAGAAGCA 24 8350
    BCL11A-6731 - CACAGAUAAACUUCUGCA 18 8351
    BCL11A-6732 - UCACAGAUAAACUUCUGCA 19 8352
    BCL11A-6733 - UUCACAGAUAAACUUCUGCA 20 8353
    BCL11A-6734 - UUUCACAGAUAAACUUCUGCA 21 8354
    BCL11A-6735 - CUUUCACAGAUAAACUUCUGCA 22 8355
    BCL11A-6736 - UCUUUCACAGAUAAACUUCUGCA 23 8356
    BCL11A-6737 - UUCUUUCACAGAUAAACUUCUGCA 24 8357
    BCL11A-6738 - CCCGUUGGGAGCUCCAGA 18 8358
    BCL11A-6739 - GCCCGUUGGGAGCUCCAGA 19 8359
    BCL11A-5453 - GGCCCGUUGGGAGCUCCAGA 20 8360
    BCL11A-6740 - CGGCCCGUUGGGAGCUCCAGA 21 8361
    BCL11A-6741 - ACGGCCCGUUGGGAGCUCCAGA 22 8362
    BCL11A-6742 - CACGGCCCGUUGGGAGCUCCAGA 23 8363
    BCL11A-6743 - CCACGGCCCGUUGGGAGCUCCAGA 24 8364
    BCL11A-6744 - GUUUAUCAACGUCAUCUA 18 8365
    BCL11A-6745 - UGUUUAUCAACGUCAUCUA 19 8366
    BCL11A-6746 - UUGUUUAUCAACGUCAUCUA 20 8367
    BCL11A-6747 - AUUGUUUAUCAACGUCAUCUA 21 8368
    BCL11A-6748 - GAUUGUUUAUCAACGUCAUCUA 22 8369
    BCL11A-6749 - CGAUUGUUUAUCAACGUCAUCUA 23 8370
    BCL11A-6750 - ACGAUUGUUUAUCAACGUCAUCUA 24 8371
    BCL11A-6751 - GGGACAUUCUUAUUUUUA 18 8372
    BCL11A-6752 - GGGGACAUUCUUAUUUUUA 19 8373
    BCL11A-6753 - GGGGGACAUUCUUAUUUUUA 20 8374
    BCL11A-6754 - UGGGGGACAUUCUUAUUUUUA 21 8375
    BCL11A-6755 - UUGGGGGACAUUCUUAUUUUUA 22 8376
    BCL11A-6756 - AUUGGGGGACAUUCUUAUUUUUA 23 8377
    BCL11A-6757 - CAUUGGGGGACAUUCUUAUUUUUA 24 8378
    BCL11A-6758 - GAGGAAUUUGCCCCAAAC 18 8379
    BCL11A-6759 - AGAGGAAUUUGCCCCAAAC 19 8380
    BCL11A-5457 - UAGAGGAAUUUGCCCCAAAC 20 8381
    BCL11A-6760 - CUAGAGGAAUUUGCCCCAAAC 21 8382
    BCL11A-6761 - UCUAGAGGAAUUUGCCCCAAAC 22 8383
    BCL11A-6762 - AUCUAGAGGAAUUUGCCCCAAAC 23 8384
    BCL11A-6763 - CAUCUAGAGGAAUUUGCCCCAAAC 24 8385
    BCL11A-6764 - ACAGAUAAACUUCUGCAC 18 8386
    BCL11A-6765 - CACAGAUAAACUUCUGCAC 19 8387
    BCL11A-5348 - UCACAGAUAAACUUCUGCAC 20 8388
    BCL11A-6766 - UUCACAGAUAAACUUCUGCAC 21 8389
    BCL11A-6767 - UUUCACAGAUAAACUUCUGCAC 22 8390
    BCL11A-6768 - CUUUCACAGAUAAACUUCUGCAC 23 8391
    BCL11A-6769 - UCUUUCACAGAUAAACUUCUGCAC 24 8392
    BCL11A-6770 - CCUCCCCUCGUUCUGCAC 18 8393
    BCL11A-6771 - UCCUCCCCUCGUUCUGCAC 19 8394
    BCL11A-6772 - CUCCUCCCCUCGUUCUGCAC 20 8395
    BCL11A-6773 - UCUCCUCCCCUCGUUCUGCAC 21 8396
    BCL11A-6774 - CUCUCCUCCCCUCGUUCUGCAC 22 8397
    BCL11A-6775 - CCUCUCCUCCCCUCGUUCUGCAC 23 8398
    BCL11A-6776 - GCCUCUCCUCCCCUCGUUCUGCAC 24 8399
    BCL11A-6777 - AAAAAAGCAUCCAAUCCC 18 8400
    BCL11A-6778 - GAAAAAAGCAUCCAAUCCC 19 8401
    BCL11A-6779 - UGAAAAAAGCAUCCAAUCCC 20 8402
    BCL11A-6780 - AUGAAAAAAGCAUCCAAUCCC 21 8403
    BCL11A-6781 - GAUGAAAAAAGCAUCCAAUCCC 22 8404
    BCL11A-6782 - AGAUGAAAAAAGCAUCCAAUCCC 23 8405
    BCL11A-6783 - GAGAUGAAAAAAGCAUCCAAUCCC 24 8406
    BCL11A-6784 - AGCAGGUAAAUGAGAAGC 18 8407
    BCL11A-6785 - UAGCAGGUAAAUGAGAAGC 19 8408
    BCL11A-6786 - AUAGCAGGUAAAUGAGAAGC 20 8409
    BCL11A-6787 - CAUAGCAGGUAAAUGAGAAGC 21 8410
    BCL11A-6788 - ACAUAGCAGGUAAAUGAGAAGC 22 8411
    BCL11A-6789 - CACAUAGCAGGUAAAUGAGAAGC 23 8412
    BCL11A-6790 - ACACAUAGCAGGUAAAUGAGAAGC 24 8413
    BCL11A-6791 - GAGCUCUAAUCCCCACGC 18 8414
    BCL11A-6792 - GGAGCUCUAAUCCCCACGC 19 8415
    BCL11A-6793 - UGGAGCUCUAAUCCCCACGC 20 8416
    BCL11A-6794 - AUGGAGCUCUAAUCCCCACGC 21 8417
    BCL11A-6795 - CAUGGAGCUCUAAUCCCCACGC 22 8418
    BCL11A-6796 - ACAUGGAGCUCUAAUCCCCACGC 23 8419
    BCL11A-6797 - CACAUGGAGCUCUAAUCCCCACGC 24 8420
    BCL11A-6798 - UUGGCAUCCAGGUCACGC 18 8421
    BCL11A-6799 - GUUGGCAUCCAGGUCACGC 19 8422
    BCL11A-6800 - GGUUGGCAUCCAGGUCACGC 20 8423
    BCL11A-6801 - AGGUUGGCAUCCAGGUCACGC 21 8424
    BCL11A-6802 - GAGGUUGGCAUCCAGGUCACGC 22 8425
    BCL11A-6803 - GGAGGUUGGCAUCCAGGUCACGC 23 8426
    BCL11A-6804 - UGGAGGUUGGCAUCCAGGUCACGC 24 8427
    BCL11A-6805 - UUGUUUAUCAACGUCAUC 18 8428
    BCL11A-6806 - AUUGUUUAUCAACGUCAUC 19 8429
    BCL11A-6807 - GAUUGUUUAUCAACGUCAUC 20 8430
    BCL11A-6808 - CGAUUGUUUAUCAACGUCAUC 21 8431
    BCL11A-6809 - ACGAUUGUUUAUCAACGUCAUC 22 8432
    BCL11A-6810 - GACGAUUGUUUAUCAACGUCAUC 23 8433
    BCL11A-6811 - UGACGAUUGUUUAUCAACGUCAUC 24 8434
    BCL11A-6812 - CAACCACAGCCGAGCCUC 18 8435
    BCL11A-6813 - CCAACCACAGCCGAGCCUC 19 8436
    BCL11A-6814 - UCCAACCACAGCCGAGCCUC 20 8437
    BCL11A-6815 - CUCCAACCACAGCCGAGCCUC 21 8438
    BCL11A-6816 - UCUCCAACCACAGCCGAGCCUC 22 8439
    BCL11A-6817 - UUCUCCAACCACAGCCGAGCCUC 23 8440
    BCL11A-6818 - UUUCUCCAACCACAGCCGAGCCUC 24 8441
    BCL11A-6819 - ACGGCCCGUUGGGAGCUC 18 8442
    BCL11A-6820 - CACGGCCCGUUGGGAGCUC 19 8443
    BCL11A-6821 - CCACGGCCCGUUGGGAGCUC 20 8444
    BCL11A-6822 - ACCACGGCCCGUUGGGAGCUC 21 8445
    BCL11A-6823 - GACCACGGCCCGUUGGGAGCUC 22 8446
    BCL11A-6824 - AGACCACGGCCCGUUGGGAGCUC 23 8447
    BCL11A-6825 - CAGACCACGGCCCGUUGGGAGCUC 24 8448
    BCL11A-6826 - AUUAUUUUGCAGGUAAAG 18 8449
    BCL11A-6827 - UAUUAUUUUGCAGGUAAAG 19 8450
    BCL11A-6828 - GUAUUAUUUUGCAGGUAAAG 20 8451
    BCL11A-6829 - UGUAUUAUUUUGCAGGUAAAG 21 8452
    BCL11A-6830 - UUGUAUUAUUUUGCAGGUAAAG 22 8453
    BCL11A-6831 - GUUGUAUUAUUUUGCAGGUAAAG 23 8454
    BCL11A-6832 - UGUUGUAUUAUUUUGCAGGUAAAG 24 8455
    BCL11A-6833 - AGGUAAAUGAGAAGCAAG 18 8456
    BCL11A-6834 - CAGGUAAAUGAGAAGCAAG 19 8457
    BCL11A-6835 - GCAGGUAAAUGAGAAGCAAG 20 8458
    BCL11A-6836 - AGCAGGUAAAUGAGAAGCAAG 21 8459
    BCL11A-6837 - UAGCAGGUAAAUGAGAAGCAAG 22 8460
    BCL11A-6838 - AUAGCAGGUAAAUGAGAAGCAAG 23 8461
    BCL11A-6839 - CAUAGCAGGUAAAUGAGAAGCAAG 24 8462
    BCL11A-6840 - CCGCAGGGUAUUUGUAAG 18 8463
    BCL11A-6841 - CCCGCAGGGUAUUUGUAAG 19 8464
    BCL11A-6842 - CCCCGCAGGGUAUUUGUAAG 20 8465
    BCL11A-6843 - GCCCCGCAGGGUAUUUGUAAG 21 8466
    BCL11A-6844 - UGCCCCGCAGGGUAUUUGUAAG 22 8467
    BCL11A-6845 - AUGCCCCGCAGGGUAUUUGUAAG 23 8468
    BCL11A-6846 - UAUGCCCCGCAGGGUAUUUGUAAG 24 8469
    BCL11A-6847 - UUGUUUCUCCAACCACAG 18 8470
    BCL11A-6848 - UUUGUUUCUCCAACCACAG 19 8471
    BCL11A-6849 - UUUUGUUUCUCCAACCACAG 20 8472
    BCL11A-6850 - CUUUUGUUUCUCCAACCACAG 21 8473
    BCL11A-6851 - GCUUUUGUUUCUCCAACCACAG 22 8474
    BCL11A-6852 - UGCUUUUGUUUCUCCAACCACAG 23 8475
    BCL11A-6853 - GUGCUUUUGUUUCUCCAACCACAG 24 8476
    BCL11A-6854 - ACCUGUGGGCAGUGCCAG 18 8477
    BCL11A-6855 - CACCUGUGGGCAGUGCCAG 19 8478
    BCL11A-6856 - UCACCUGUGGGCAGUGCCAG 20 8479
    BCL11A-6857 - CUCACCUGUGGGCAGUGCCAG 21 8480
    BCL11A-6858 - CCUCACCUGUGGGCAGUGCCAG 22 8481
    BCL11A-6859 - UCCUCACCUGUGGGCAGUGCCAG 23 8482
    BCL11A-6860 - CUCCUCACCUGUGGGCAGUGCCAG 24 8483
    BCL11A-6861 - GCCCGUUGGGAGCUCCAG 18 8484
    BCL11A-6862 - GGCCCGUUGGGAGCUCCAG 19 8485
    BCL11A-6863 - CGGCCCGUUGGGAGCUCCAG 20 8486
    BCL11A-6864 - ACGGCCCGUUGGGAGCUCCAG 21 8487
    BCL11A-6865 - CACGGCCCGUUGGGAGCUCCAG 22 8488
    BCL11A-6866 - CCACGGCCCGUUGGGAGCUCCAG 23 8489
    BCL11A-6867 - ACCACGGCCCGUUGGGAGCUCCAG 24 8490
    BCL11A-6868 - UCCCCUUCACCAAUCGAG 18 8491
    BCL11A-6869 - UUCCCCUUCACCAAUCGAG 19 8492
    BCL11A-6870 - CUUCCCCUUCACCAAUCGAG 20 8493
    BCL11A-6871 - CCUUCCCCUUCACCAAUCGAG 21 8494
    BCL11A-6872 - ACCUUCCCCUUCACCAAUCGAG 22 8495
    BCL11A-6873 - CACCUUCCCCUUCACCAAUCGAG 23 8496
    BCL11A-6874 - CCACCUUCCCCUUCACCAAUCGAG 24 8497
    BCL11A-6875 - GAACCAGACCACGGCCCG 18 8498
    BCL11A-6876 - UGAACCAGACCACGGCCCG 19 8499
    BCL11A-6877 - AUGAACCAGACCACGGCCCG 20 8500
    BCL11A-6878 - GAUGAACCAGACCACGGCCCG 21 8501
    BCL11A-6879 - UGAUGAACCAGACCACGGCCCG 22 8502
    BCL11A-6880 - AUGAUGAACCAGACCACGGCCCG 23 8503
    BCL11A-6881 - GAUGAUGAACCAGACCACGGCCCG 24 8504
    BCL11A-6882 - AAAAAGCAUCCAAUCCCG 18 8505
    BCL11A-6883 - AAAAAAGCAUCCAAUCCCG 19 8506
    BCL11A-5358 - GAAAAAAGCAUCCAAUCCCG 20 8507
    BCL11A-6884 - UGAAAAAAGCAUCCAAUCCCG 21 8508
    BCL11A-6885 - AUGAAAAAAGCAUCCAAUCCCG 22 8509
    BCL11A-6886 - GAUGAAAAAAGCAUCCAAUCCCG 23 8510
    BCL11A-6887 - AGAUGAAAAAAGCAUCCAAUCCCG 24 8511
    BCL11A-6888 - GAUAAACUUCUGCACUGG 18 8512
    BCL11A-6889 - AGAUAAACUUCUGCACUGG 19 8513
    BCL11A-5360 - CAGAUAAACUUCUGCACUGG 20 8514
    BCL11A-6890 - ACAGAUAAACUUCUGCACUGG 21 8515
    BCL11A-6891 - CACAGAUAAACUUCUGCACUGG 22 8516
    BCL11A-6892 - UCACAGAUAAACUUCUGCACUGG 23 8517
    BCL11A-6893 - UUCACAGAUAAACUUCUGCACUGG 24 8518
    BCL11A-6894 - AAGCCAUUCUUACAGAUG 18 8519
    BCL11A-6895 - GAAGCCAUUCUUACAGAUG 19 8520
    BCL11A-6896 - UGAAGCCAUUCUUACAGAUG 20 8521
    BCL11A-6897 - UUGAAGCCAUUCUUACAGAUG 21 8522
    BCL11A-6898 - CUUGAAGCCAUUCUUACAGAUG 22 8523
    BCL11A-6899 - UCUUGAAGCCAUUCUUACAGAUG 23 8524
    BCL11A-6900 - CUCUUGAAGCCAUUCUUACAGAUG 24 8525
    BCL11A-6901 - AGAUAAACUUCUGCACUG 18 8526
    BCL11A-6902 - CAGAUAAACUUCUGCACUG 19 8527
    BCL11A-6903 - ACAGAUAAACUUCUGCACUG 20 8528
    BCL11A-6904 - CACAGAUAAACUUCUGCACUG 21 8529
    BCL11A-6905 - UCACAGAUAAACUUCUGCACUG 22 8530
    BCL11A-6906 - UUCACAGAUAAACUUCUGCACUG 23 8531
    BCL11A-6907 - UUUCACAGAUAAACUUCUGCACUG 24 8532
    BCL11A-6908 - CAGAUGAACUUCCCAUUG 18 8533
    BCL11A-6909 - CCAGAUGAACUUCCCAUUG 19 8534
    BCL11A-5499 - GCCAGAUGAACUUCCCAUUG 20 8535
    BCL11A-6910 - UGCCAGAUGAACUUCCCAUUG 21 8536
    BCL11A-6911 - GUGCCAGAUGAACUUCCCAUUG 22 8537
    BCL11A-6912 - AGUGCCAGAUGAACUUCCCAUUG 23 8538
    BCL11A-6913 - CAGUGCCAGAUGAACUUCCCAUUG 24 8539
    BCL11A-6914 - AACACAUAGCAGGUAAAU 18 8540
    BCL11A-6915 - GAACACAUAGCAGGUAAAU 19 8541
    BCL11A-6916 - GGAACACAUAGCAGGUAAAU 20 8542
    BCL11A-6917 - AGGAACACAUAGCAGGUAAAU 21 8543
    BCL11A-6918 - CAGGAACACAUAGCAGGUAAAU 22 8544
    BCL11A-6919 - ACAGGAACACAUAGCAGGUAAAU 23 8545
    BCL11A-6920 - AACAGGAACACAUAGCAGGUAAAU 24 8546
    BCL11A-6921 - GCCAGAUGAACUUCCCAU 18 8547
    BCL11A-6922 - UGCCAGAUGAACUUCCCAU 19 8548
    BCL11A-5503 - GUGCCAGAUGAACUUCCCAU 20 8549
    BCL11A-6923 - AGUGCCAGAUGAACUUCCCAU 21 8550
    BCL11A-6924 - CAGUGCCAGAUGAACUUCCCAU 22 8551
    BCL11A-6925 - GCAGUGCCAGAUGAACUUCCCAU 23 8552
    BCL11A-6926 - GGCAGUGCCAGAUGAACUUCCCAU 24 8553
    BCL11A-6927 - AUCAUGACCUCCUCACCU 18 8554
    BCL11A-6928 - GAUCAUGACCUCCUCACCU 19 8555
    BCL11A-6929 - GGAUCAUGACCUCCUCACCU 20 8556
    BCL11A-6930 - GGGAUCAUGACCUCCUCACCU 21 8557
    BCL11A-6931 - GGGGAUCAUGACCUCCUCACCU 22 8558
    BCL11A-6932 - AGGGGAUCAUGACCUCCUCACCU 23 8559
    BCL11A-6933 - AAGGGGAUCAUGACCUCCUCACCU 24 8560
    BCL11A-6934 - GCAAUGGCAGCCUCUGCU 18 8561
    BCL11A-6935 - UGCAAUGGCAGCCUCUGCU 19 8562
    BCL11A-6936 - AUGCAAUGGCAGCCUCUGCU 20 8563
    BCL11A-6937 - AAUGCAAUGGCAGCCUCUGCU 21 8564
    BCL11A-6938 - CAAUGCAAUGGCAGCCUCUGCU 22 8565
    BCL11A-6939 - ACAAUGCAAUGGCAGCCUCUGCU 23 8566
    BCL11A-6940 - AACAAUGCAAUGGCAGCCUCUGCU 24 8567
    BCL11A-6941 - AACCAGACCACGGCCCGU 18 8568
    BCL11A-6942 - GAACCAGACCACGGCCCGU 19 8569
    BCL11A-5363 - UGAACCAGACCACGGCCCGU 20 8570
    BCL11A-6943 - AUGAACCAGACCACGGCCCGU 21 8571
    BCL11A-6944 - GAUGAACCAGACCACGGCCCGU 22 8572
    BCL11A-6945 - UGAUGAACCAGACCACGGCCCGU 23 8573
    BCL11A-6946 - AUGAUGAACCAGACCACGGCCCGU 24 8574
    BCL11A-6947 - CCAGAUGAACUUCCCAUU 18 8575
    BCL11A-6948 - GCCAGAUGAACUUCCCAUU 19 8576
    BCL11A-5511 - UGCCAGAUGAACUUCCCAUU 20 8577
    BCL11A-6949 - GUGCCAGAUGAACUUCCCAUU 21 8578
    BCL11A-6950 - AGUGCCAGAUGAACUUCCCAUU 22 8579
    BCL11A-6951 - CAGUGCCAGAUGAACUUCCCAUU 23 8580
    BCL11A-6952 - GCAGUGCCAGAUGAACUUCCCAUU 24 8581
    BCL11A-6953 - ACCAGACCACGGCCCGUU 18 8582
    BCL11A-6954 - AACCAGACCACGGCCCGUU 19 8583
    BCL11A-5512 - GAACCAGACCACGGCCCGUU 20 8584
    BCL11A-6955 - UGAACCAGACCACGGCCCGUU 21 8585
    BCL11A-6956 - AUGAACCAGACCACGGCCCGUU 22 8586
    BCL11A-6957 - GAUGAACCAGACCACGGCCCGUU 23 8587
    BCL11A-6958 - UGAUGAACCAGACCACGGCCCGUU 24 8588
  • Table 16D provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fourth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 16D
    4th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-6959 + GUAUUCUUAGCAGGUUAA 18 8589
    BCL11A-6960 + GGUAUUCUUAGCAGGUUAA 19 8590
    BCL11A-5890 + UGGUAUUCUUAGCAGGUUAA 20 8591
    BCL11A-6961 + CUGGUAUUCUUAGCAGGUUAA 21 8592
    BCL11A-6962 + CCUGGUAUUCUUAGCAGGUUAA 22 8593
    BCL11A-6963 + UCCUGGUAUUCUUAGCAGGUUAA 23 8594
    BCL11A-6964 + AUCCUGGUAUUCUUAGCAGGUUAA 24 8595
    BCL11A-6965 + CGGGAGGCUCCAUAGCCA 18 8596
    BCL11A-6966 + GCGGGAGGCUCCAUAGCCA 19 8597
    BCL11A-6967 + GGCGGGAGGCUCCAUAGCCA 20 8598
    BCL11A-6968 + UGGCGGGAGGCUCCAUAGCCA 21 8599
    BCL11A-6969 + AUGGCGGGAGGCUCCAUAGCCA 22 8600
    BCL11A-6970 + CAUGGCGGGAGGCUCCAUAGCCA 23 8601
    BCL11A-6971 + CCAUGGCGGGAGGCUCCAUAGCCA 24 8602
    BCL11A-6972 + GGUCCGACUCGCCGGCCA 18 8603
    BCL11A-6973 + CGGUCCGACUCGCCGGCCA 19 8604
    BCL11A-6974 + GCGGUCCGACUCGCCGGCCA 20 8605
    BCL11A-6975 + UGCGGUCCGACUCGCCGGCCA 21 8606
    BCL11A-6976 + AUGCGGUCCGACUCGCCGGCCA 22 8607
    BCL11A-6977 + UAUGCGGUCCGACUCGCCGGCCA 23 8608
    BCL11A-6978 + CUAUGCGGUCCGACUCGCCGGCCA 24 8609
    BCL11A-6979 + AGUCUCCGAAGCUAAGGA 18 8610
    BCL11A-6980 + GAGUCUCCGAAGCUAAGGA 19 8611
    BCL11A-5923 + GGAGUCUCCGAAGCUAAGGA 20 8612
    BCL11A-6981 + UGGAGUCUCCGAAGCUAAGGA 21 8613
    BCL11A-6982 + CUGGAGUCUCCGAAGCUAAGGA 22 8614
    BCL11A-6983 + UCUGGAGUCUCCGAAGCUAAGGA 23 8615
    BCL11A-6984 + GUCUGGAGUCUCCGAAGCUAAGGA 24 8616
    BCL11A-6985 + GGACUAAACAGGGGGGGA 18 8617
    BCL11A-6986 + UGGACUAAACAGGGGGGGA 19 8618
    BCL11A-6987 + GUGGACUAAACAGGGGGGGA 20 8619
    BCL11A-6988 + GGUGGACUAAACAGGGGGGGA 21 8620
    BCL11A-6989 + UGGUGGACUAAACAGGGGGGGA 22 8621
    BCL11A-6990 + GUGGUGGACUAAACAGGGGGGGA 23 8622
    BCL11A-6991 + GGUGGUGGACUAAACAGGGGGGGA 24 8623
    BCL11A-6992 + UUCUGCACCUAGUCCUGA 18 8624
    BCL11A-6993 + AUUCUGCACCUAGUCCUGA 19 8625
    BCL11A-5937 + CAUUCUGCACCUAGUCCUGA 20 8626
    BCL11A-6994 + ACAUUCUGCACCUAGUCCUGA 21 8627
    BCL11A-6995 + GACAUUCUGCACCUAGUCCUGA 22 8628
    BCL11A-6996 + GGACAUUCUGCACCUAGUCCUGA 23 8629
    BCL11A-6997 + AGGACAUUCUGCACCUAGUCCUGA 24 8630
    BCL11A-6998 + GCACCCUGUCAAAGGCAC 18 8631
    BCL11A-6999 + AGCACCCUGUCAAAGGCAC 19 8632
    BCL11A-7000 + CAGCACCCUGUCAAAGGCAC 20 8633
    BCL11A-7001 + GCAGCACCCUGUCAAAGGCAC 21 8634
    BCL11A-7002 + CGCAGCACCCUGUCAAAGGCAC 22 8635
    BCL11A-7003 + CCGCAGCACCCUGUCAAAGGCAC 23 8636
    BCL11A-7004 + ACCGCAGCACCCUGUCAAAGGCAC 24 8637
    BCL11A-7005 + UAAGUAGAUUCUUAAUCC 18 8638
    BCL11A-7006 + CUAAGUAGAUUCUUAAUCC 19 8639
    BCL11A-7007 + UCUAAGUAGAUUCUUAAUCC 20 8640
    BCL11A-7008 + UUCUAAGUAGAUUCUUAAUCC 21 8641
    BCL11A-7009 + UUUCUAAGUAGAUUCUUAAUCC 22 8642
    BCL11A-7010 + CUUUCUAAGUAGAUUCUUAAUCC 23 8643
    BCL11A-7011 + GCUUUCUAAGUAGAUUCUUAAUCC 24 8644
    BCL11A-7012 + GGCGGCUUGCUACCUGGC 18 8645
    BCL11A-7013 + GGGCGGCUUGCUACCUGGC 19 8646
    BCL11A-6036 + AGGGCGGCUUGCUACCUGGC 20 8647
    BCL11A-7014 + AAGGGCGGCUUGCUACCUGGC 21 8648
    BCL11A-7015 + GAAGGGCGGCUUGCUACCUGGC 22 8649
    BCL11A-7016 + GGAAGGGCGGCUUGCUACCUGGC 23 8650
    BCL11A-7017 + AGGAAGGGCGGCUUGCUACCUGGC 24 8651
    BCL11A-7018 + GCGCUUCAGCUUGCUGGC 18 8652
    BCL11A-7019 + GGCGCUUCAGCUUGCUGGC 19 8653
    BCL11A-7020 + UGGCGCUUCAGCUUGCUGGC 20 8654
    BCL11A-7021 + GUGGCGCUUCAGCUUGCUGGC 21 8655
    BCL11A-7022 + UGUGGCGCUUCAGCUUGCUGGC 22 8656
    BCL11A-7023 + AUGUGGCGCUUCAGCUUGCUGGC 23 8657
    BCL11A-7024 + CAUGUGGCGCUUCAGCUUGCUGGC 24 8658
    BCL11A-7025 + CUCCUCGUCCCCGUUCUC 18 8659
    BCL11A-7026 + CCUCCUCGUCCCCGUUCUC 19 8660
    BCL11A-6050 + UCCUCCUCGUCCCCGUUCUC 20 8661
    BCL11A-7027 + UUCCUCCUCGUCCCCGUUCUC 21 8662
    BCL11A-7028 + CUUCCUCCUCGUCCCCGUUCUC 22 8663
    BCL11A-7029 + UCUUCCUCCUCGUCCCCGUUCUC 23 8664
    BCL11A-7030 + CUCUUCCUCCUCGUCCCCGUUCUC 24 8665
    BCL11A-7031 + AGGCAAAAGGCGAUUGUC 18 8666
    BCL11A-7032 + GAGGCAAAAGGCGAUUGUC 19 8667
    BCL11A-6054 + GGAGGCAAAAGGCGAUUGUC 20 8668
    BCL11A-7033 + AGGAGGCAAAAGGCGAUUGUC 21 8669
    BCL11A-7034 + GAGGAGGCAAAAGGCGAUUGUC 22 8670
    BCL11A-7035 + CGAGGAGGCAAAAGGCGAUUGUC 23 8671
    BCL11A-7036 + ACGAGGAGGCAAAAGGCGAUUGUC 24 8672
    BCL11A-7037 + AGCUCUCUGGGUACUACG 18 8673
    BCL11A-7038 + GAGCUCUCUGGGUACUACG 19 8674
    BCL11A-7039 + UGAGCUCUCUGGGUACUACG 20 8675
    BCL11A-7040 + UUGAGCUCUCUGGGUACUACG 21 8676
    BCL11A-7041 + CUUGAGCUCUCUGGGUACUACG 22 8677
    BCL11A-7042 + UCUUGAGCUCUCUGGGUACUACG 23 8678
    BCL11A-7043 + AUCUUGAGCUCUCUGGGUACUACG 24 8679
    BCL11A-7044 + UGAAGGGAUACCAACCCG 18 8680
    BCL11A-7045 + CUGAAGGGAUACCAACCCG 19 8681
    BCL11A-6084 + CCUGAAGGGAUACCAACCCG 20 8682
    BCL11A-7046 + UCCUGAAGGGAUACCAACCCG 21 8683
    BCL11A-7047 + GUCCUGAAGGGAUACCAACCCG 22 8684
    BCL11A-7048 + AGUCCUGAAGGGAUACCAACCCG 23 8685
    BCL11A-7049 + UAGUCCUGAAGGGAUACCAACCCG 24 8686
    BCL11A-7050 + GCAAACUCCCGUUCUCCG 18 8687
    BCL11A-7051 + CGCAAACUCCCGUUCUCCG 19 8688
    BCL11A-6094 + GCGCAAACUCCCGUUCUCCG 20 8689
    BCL11A-7052 + AGCGCAAACUCCCGUUCUCCG 21 8690
    BCL11A-7053 + AAGCGCAAACUCCCGUUCUCCG 22 8691
    BCL11A-7054 + GAAGCGCAAACUCCCGUUCUCCG 23 8692
    BCL11A-7055 + AGAAGCGCAAACUCCCGUUCUCCG 24 8693
    BCL11A-7056 + GGCUGGGAGGGAGGAGGG 18 8694
    BCL11A-7057 + GGGCUGGGAGGGAGGAGGG 19 8695
    BCL11A-7058 + GGGGCUGGGAGGGAGGAGGG 20 8696
    BCL11A-7059 + GGGGGCUGGGAGGGAGGAGGG 21 8697
    BCL11A-7060 + CGGGGGCUGGGAGGGAGGAGGG 22 8698
    BCL11A-7061 + CCGGGGGCUGGGAGGGAGGAGGG 23 8699
    BCL11A-7062 + ACCGGGGGCUGGGAGGGAGGAGGG 24 8700
    BCL11A-7063 + UGGUGGACUAAACAGGGG 18 8701
    BCL11A-7064 + GUGGUGGACUAAACAGGGG 19 8702
    BCL11A-6139 + GGUGGUGGACUAAACAGGGG 20 8703
    BCL11A-7065 + CGGUGGUGGACUAAACAGGGG 21 8704
    BCL11A-7066 + UCGGUGGUGGACUAAACAGGGG 22 8705
    BCL11A-7067 + CUCGGUGGUGGACUAAACAGGGG 23 8706
    BCL11A-7068 + UCUCGGUGGUGGACUAAACAGGGG 24 8707
    BCL11A-7069 + AAGAGAAACCAUGCACUG 18 8708
    BCL11A-7070 + CAAGAGAAACCAUGCACUG 19 8709
    BCL11A-7071 + GCAAGAGAAACCAUGCACUG 20 8710
    BCL11A-7072 + UGCAAGAGAAACCAUGCACUG 21 8711
    BCL11A-7073 + UUGCAAGAGAAACCAUGCACUG 22 8712
    BCL11A-7074 + GUUGCAAGAGAAACCAUGCACUG 23 8713
    BCL11A-7075 + UGUUGCAAGAGAAACCAUGCACUG 24 8714
    BCL11A-7076 + GUCAAAGGCACUCGGGUG 18 8715
    BCL11A-7077 + UGUCAAAGGCACUCGGGUG 19 8716
    BCL11A-7078 + CUGUCAAAGGCACUCGGGUG 20 8717
    BCL11A-7079 + CCUGUCAAAGGCACUCGGGUG 21 8718
    BCL11A-7080 + CCCUGUCAAAGGCACUCGGGUG 22 8719
    BCL11A-7081 + ACCCUGUCAAAGGCACUCGGGUG 23 8720
    BCL11A-7082 + CACCCUGUCAAAGGCACUCGGGUG 24 8721
    BCL11A-7083 + CCCACCAAGUCGCUGGUG 18 8722
    BCL11A-7084 + GCCCACCAAGUCGCUGGUG 19 8723
    BCL11A-7085 + UGCCCACCAAGUCGCUGGUG 20 8724
    BCL11A-7086 + CUGCCCACCAAGUCGCUGGUG 21 8725
    BCL11A-7087 + GCUGCCCACCAAGUCGCUGGUG 22 8726
    BCL11A-7088 + CGCUGCCCACCAAGUCGCUGGUG 23 8727
    BCL11A-7089 + GCGCUGCCCACCAAGUCGCUGGUG 24 8728
    BCL11A-7090 + GGGGUUAUUGUCUGCAAU 18 8729
    BCL11A-7091 + AGGGGUUAUUGUCUGCAAU 19 8730
    BCL11A-7092 + AAGGGGUUAUUGUCUGCAAU 20 8731
    BCL11A-7093 + AAAGGGGUUAUUGUCUGCAAU 21 8732
    BCL11A-7094 + UAAAGGGGUUAUUGUCUGCAAU 22 8733
    BCL11A-7095 + UUAAAGGGGUUAUUGUCUGCAAU 23 8734
    BCL11A-7096 + GUUAAAGGGGUUAUUGUCUGCAAU 24 8735
    BCL11A-7097 + CUGGGUACUACGCCGAAU 18 8736
    BCL11A-7098 + UCUGGGUACUACGCCGAAU 19 8737
    BCL11A-6182 + CUCUGGGUACUACGCCGAAU 20 8738
    BCL11A-7099 + UCUCUGGGUACUACGCCGAAU 21 8739
    BCL11A-7100 + CUCUCUGGGUACUACGCCGAAU 22 8740
    BCL11A-7101 + GCUCUCUGGGUACUACGCCGAAU 23 8741
    BCL11A-7102 + AGCUCUCUGGGUACUACGCCGAAU 24 8742
    BCL11A-7103 + CGUAGCCGGCGAGCCACU 18 8743
    BCL11A-7104 + GCGUAGCCGGCGAGCCACU 19 8744
    BCL11A-7105 + CGCGUAGCCGGCGAGCCACU 20 8745
    BCL11A-7106 + CCGCGUAGCCGGCGAGCCACU 21 8746
    BCL11A-7107 + GCCGCGUAGCCGGCGAGCCACU 22 8747
    BCL11A-7108 + GGCCGCGUAGCCGGCGAGCCACU 23 8748
    BCL11A-7109 + AGGCCGCGUAGCCGGCGAGCCACU 24 8749
    BCL11A-7110 + CCACACAUCUUGAGCUCU 18 8750
    BCL11A-7111 + GCCACACAUCUUGAGCUCU 19 8751
    BCL11A-7112 + UGCCACACAUCUUGAGCUCU 20 8752
    BCL11A-7113 + CUGCCACACAUCUUGAGCUCU 21 8753
    BCL11A-7114 + ACUGCCACACAUCUUGAGCUCU 22 8754
    BCL11A-7115 + AACUGCCACACAUCUUGAGCUCU 23 8755
    BCL11A-7116 + AAACUGCCACACAUCUUGAGCUCU 24 8756
    BCL11A-7117 + CGUUCUCCGGGAUCAGGU 18 8757
    BCL11A-7118 + CCGUUCUCCGGGAUCAGGU 19 8758
    BCL11A-6223 + CCCGUUCUCCGGGAUCAGGU 20 8759
    BCL11A-7119 + CCCCGUUCUCCGGGAUCAGGU 21 8760
    BCL11A-7120 + UCCCCGUUCUCCGGGAUCAGGU 22 8761
    BCL11A-7121 + GUCCCCGUUCUCCGGGAUCAGGU 23 8762
    BCL11A-7122 + CGUCCCCGUUCUCCGGGAUCAGGU 24 8763
    BCL11A-7123 + CCAGGCGCUCUAUGCGGU 18 8764
    BCL11A-7124 + CCCAGGCGCUCUAUGCGGU 19 8765
    BCL11A-6226 + CCCCAGGCGCUCUAUGCGGU 20 8766
    BCL11A-7125 + CCCCCAGGCGCUCUAUGCGGU 21 8767
    BCL11A-7126 + GCCCCCAGGCGCUCUAUGCGGU 22 8768
    BCL11A-7127 + CGCCCCCAGGCGCUCUAUGCGGU 23 8769
    BCL11A-7128 + CCGCCCCCAGGCGCUCUAUGCGGU 24 8770
    BCL11A-7129 - UUCCCAGCCACCUCUCCA 18 8771
    BCL11A-7130 - CUUCCCAGCCACCUCUCCA 19 8772
    BCL11A-5903 - CCUUCCCAGCCACCUCUCCA 20 8773
    BCL11A-7131 - UCCUUCCCAGCCACCUCUCCA 21 8774
    BCL11A-7132 - GUCCUUCCCAGCCACCUCUCCA 22 8775
    BCL11A-7133 - UGUCCUUCCCAGCCACCUCUCCA 23 8776
    BCL11A-7134 - AUGUCCUUCCCAGCCACCUCUCCA 24 8777
    BCL11A-7135 - AGCGCAUCAAGCUCGAGA 18 8778
    BCL11A-7136 - AAGCGCAUCAAGCUCGAGA 19 8779
    BCL11A-5919 - UAAGCGCAUCAAGCUCGAGA 20 8780
    BCL11A-7137 - CUAAGCGCAUCAAGCUCGAGA 21 8781
    BCL11A-7138 - UCUAAGCGCAUCAAGCUCGAGA 22 8782
    BCL11A-7139 - CUCUAAGCGCAUCAAGCUCGAGA 23 8783
    BCL11A-7140 - UCUCUAAGCGCAUCAAGCUCGAGA 24 8784
    BCL11A-7141 - GGAGCUGACGGAGAGCGA 18 8785
    BCL11A-7142 - AGGAGCUGACGGAGAGCGA 19 8786
    BCL11A-7143 - GAGGAGCUGACGGAGAGCGA 20 8787
    BCL11A-7144 - GGAGGAGCUGACGGAGAGCGA 21 8788
    BCL11A-7145 - AGGAGGAGCUGACGGAGAGCGA 22 8789
    BCL11A-7146 - GAGGAGGAGCUGACGGAGAGCGA 23 8790
    BCL11A-7147 - GGAGGAGGAGCUGACGGAGAGCGA 24 8791
    BCL11A-7148 - UCACCCGAGUGCCUUUGA 18 8792
    BCL11A-7149 - AUCACCCGAGUGCCUUUGA 19 8793
    BCL11A-7150 - CAUCACCCGAGUGCCUUUGA 20 8794
    BCL11A-7151 - CCAUCACCCGAGUGCCUUUGA 21 8795
    BCL11A-7152 - CCCAUCACCCGAGUGCCUUUGA 22 8796
    BCL11A-7153 - ACCCAUCACCCGAGUGCCUUUGA 23 8797
    BCL11A-7154 - CACCCAUCACCCGAGUGCCUUUGA 24 8798
    BCL11A-7155 - GAGCACUCCUCGGAGAAC 18 8799
    BCL11A-7156 - GGAGCACUCCUCGGAGAAC 19 8800
    BCL11A-5949 - CGGAGCACUCCUCGGAGAAC 20 8801
    BCL11A-7157 - UCGGAGCACUCCUCGGAGAAC 21 8802
    BCL11A-7158 - GUCGGAGCACUCCUCGGAGAAC 22 8803
    BCL11A-7159 - CGUCGGAGCACUCCUCGGAGAAC 23 8804
    BCL11A-7160 - UCGUCGGAGCACUCCUCGGAGAAC 24 8805
    BCL11A-7161 - GCCCUGGCCACCCAUCAC 18 8806
    BCL11A-7162 - GGCCCUGGCCACCCAUCAC 19 8807
    BCL11A-7163 - UGGCCCUGGCCACCCAUCAC 20 8808
    BCL11A-7164 - AUGGCCCUGGCCACCCAUCAC 21 8809
    BCL11A-7165 - GAUGGCCCUGGCCACCCAUCAC 22 8810
    BCL11A-7166 - AGAUGGCCCUGGCCACCCAUCAC 23 8811
    BCL11A-7167 - GAGAUGGCCCUGGCCACCCAUCAC 24 8812
    BCL11A-7168 - UUAACCUGCUAAGAAUAC 18 8813
    BCL11A-7169 - UUUAACCUGCUAAGAAUAC 19 8814
    BCL11A-7170 - CUUUAACCUGCUAAGAAUAC 20 8815
    BCL11A-7171 - CCUUUAACCUGCUAAGAAUAC 21 8816
    BCL11A-7172 - CCCUUUAACCUGCUAAGAAUAC 22 8817
    BCL11A-7173 - CCCCUUUAACCUGCUAAGAAUAC 23 8818
    BCL11A-7174 - ACCCCUUUAACCUGCUAAGAAUAC 24 8819
    BCL11A-7175 - CGGAAGUCCCCUGACCCC 18 8820
    BCL11A-7176 - ACGGAAGUCCCCUGACCCC 19 8821
    BCL11A-7177 - CACGGAAGUCCCCUGACCCC 20 8822
    BCL11A-7178 - ACACGGAAGUCCCCUGACCCC 21 8823
    BCL11A-7179 - AACACGGAAGUCCCCUGACCCC 22 8824
    BCL11A-7180 - GAACACGGAAGUCCCCUGACCCC 23 8825
    BCL11A-7181 - CGAACACGGAAGUCCCCUGACCCC 24 8826
    BCL11A-7182 - AGAAAAUUUGAAGCCCCC 18 8827
    BCL11A-7183 - GAGAAAAUUUGAAGCCCCC 19 8828
    BCL11A-5969 - UGAGAAAAUUUGAAGCCCCC 20 8829
    BCL11A-7184 - CUGAGAAAAUUUGAAGCCCCC 21 8830
    BCL11A-7185 - UCUGAGAAAAUUUGAAGCCCCC 22 8831
    BCL11A-7186 - UUCUGAGAAAAUUUGAAGCCCCC 23 8832
    BCL11A-7187 - GUUCUGAGAAAAUUUGAAGCCCCC 24 8833
    BCL11A-7188 - GCUAUGGAGCCUCCCGCC 18 8834
    BCL11A-7189 - GGCUAUGGAGCCUCCCGCC 19 8835
    BCL11A-7190 - UGGCUAUGGAGCCUCCCGCC 20 8836
    BCL11A-7191 - AUGGCUAUGGAGCCUCCCGCC 21 8837
    BCL11A-7192 - AAUGGCUAUGGAGCCUCCCGCC 22 8838
    BCL11A-7193 - CAAUGGCUAUGGAGCCUCCCGCC 23 8839
    BCL11A-7194 - CCAAUGGCUAUGGAGCCUCCCGCC 24 8840
    BCL11A-7195 - AACACGCACAGAACACUC 18 8841
    BCL11A-7196 - CAACACGCACAGAACACUC 19 8842
    BCL11A-7197 - GCAACACGCACAGAACACUC 20 8843
    BCL11A-7198 - UGCAACACGCACAGAACACUC 21 8844
    BCL11A-7199 - UUGCAACACGCACAGAACACUC 22 8845
    BCL11A-7200 - CUUGCAACACGCACAGAACACUC 23 8846
    BCL11A-7201 - UCUUGCAACACGCACAGAACACUC 24 8847
    BCL11A-7202 - ACGAAGACUCGGUGGCCG 18 8848
    BCL11A-7203 - GACGAAGACUCGGUGGCCG 19 8849
    BCL11A-7204 - CGACGAAGACUCGGUGGCCG 20 8850
    BCL11A-7205 - GCGACGAAGACUCGGUGGCCG 21 8851
    BCL11A-7206 - UGCGACGAAGACUCGGUGGCCG 22 8852
    BCL11A-7207 - UUGCGACGAAGACUCGGUGGCCG 23 8853
    BCL11A-7208 - CUUGCGACGAAGACUCGGUGGCCG 24 8854
    BCL11A-7209 - GCCCGGGGAGCUGGACGG 18 8855
    BCL11A-7210 - CGCCCGGGGAGCUGGACGG 19 8856
    BCL11A-6121 - CCGCCCGGGGAGCUGGACGG 20 8857
    BCL11A-7211 - ACCGCCCGGGGAGCUGGACGG 21 8858
    BCL11A-7212 - CACCGCCCGGGGAGCUGGACGG 22 8859
    BCL11A-7213 - ACACCGCCCGGGGAGCUGGACGG 23 8860
    BCL11A-7214 - CACACCGCCCGGGGAGCUGGACGG 24 8861
    BCL11A-7215 - GCCGCGGCUGCUCCCCGG 18 8862
    BCL11A-7216 - GGCCGCGGCUGCUCCCCGG 19 8863
    BCL11A-7217 - UGGCCGCGGCUGCUCCCCGG 20 8864
    BCL11A-7218 - AUGGCCGCGGCUGCUCCCCGG 21 8865
    BCL11A-7219 - AAUGGCCGCGGCUGCUCCCCGG 22 8866
    BCL11A-7220 - UAAUGGCCGCGGCUGCUCCCCGG 23 8867
    BCL11A-7221 - UUAAUGGCCGCGGCUGCUCCCCGG 24 8868
    BCL11A-7222 - UUUGACAGGGUGCUGCGG 18 8869
    BCL11A-7223 - CUUUGACAGGGUGCUGCGG 19 8870
    BCL11A-7224 - CCUUUGACAGGGUGCUGCGG 20 8871
    BCL11A-7225 - GCCUUUGACAGGGUGCUGCGG 21 8872
    BCL11A-7226 - UGCCUUUGACAGGGUGCUGCGG 22 8873
    BCL11A-7227 - GUGCCUUUGACAGGGUGCUGCGG 23 8874
    BCL11A-7228 - AGUGCCUUUGACAGGGUGCUGCGG 24 8875
    BCL11A-7229 - AUUUGAAGCCCCCAGGGG 18 8876
    BCL11A-7230 - AAUUUGAAGCCCCCAGGGG 19 8877
    BCL11A-6140 - AAAUUUGAAGCCCCCAGGGG 20 8878
    BCL11A-7231 - AAAAUUUGAAGCCCCCAGGGG 21 8879
    BCL11A-7232 - GAAAAUUUGAAGCCCCCAGGGG 22 8880
    BCL11A-7233 - AGAAAAUUUGAAGCCCCCAGGGG 23 8881
    BCL11A-7234 - GAGAAAAUUUGAAGCCCCCAGGGG 24 8882
    BCL11A-7235 - UCCCUUCAGGACUAGGUG 18 8883
    BCL11A-7236 - AUCCCUUCAGGACUAGGUG 19 8884
    BCL11A-7237 - UAUCCCUUCAGGACUAGGUG 20 8885
    BCL11A-7238 - GUAUCCCUUCAGGACUAGGUG 21 8886
    BCL11A-7239 - GGUAUCCCUUCAGGACUAGGUG 22 8887
    BCL11A-7240 - UGGUAUCCCUUCAGGACUAGGUG 23 8888
    BCL11A-7241 - UUGGUAUCCCUUCAGGACUAGGUG 24 8889
    BCL11A-7242 - CGGUCAAGUCCAAGUCAU 18 8890
    BCL11A-7243 - CCGGUCAAGUCCAAGUCAU 19 8891
    BCL11A-7244 - CCCGGUCAAGUCCAAGUCAU 20 8892
    BCL11A-7245 - CCCCGGUCAAGUCCAAGUCAU 21 8893
    BCL11A-7246 - CCCCCGGUCAAGUCCAAGUCAU 22 8894
    BCL11A-7247 - GCCCCCGGUCAAGUCCAAGUCAU 23 8895
    BCL11A-7248 - AGCCCCCGGUCAAGUCCAAGUCAU 24 8896
    BCL11A-7249 - UAACCCCUUUAACCUGCU 18 8897
    BCL11A-7250 - AUAACCCCUUUAACCUGCU 19 8898
    BCL11A-7251 - AAUAACCCCUUUAACCUGCU 20 8899
    BCL11A-7252 - CAAUAACCCCUUUAACCUGCU 21 8900
    BCL11A-7253 - ACAAUAACCCCUUUAACCUGCU 22 8901
    BCL11A-7254 - GACAAUAACCCCUUUAACCUGCU 23 8902
    BCL11A-7255 - AGACAAUAACCCCUUUAACCUGCU 24 8903
    BCL11A-7256 - ACAGAACACUCAUGGAUU 18 8904
    BCL11A-7257 - CACAGAACACUCAUGGAUU 19 8905
    BCL11A-7258 - GCACAGAACACUCAUGGAUU 20 8906
    BCL11A-7259 - CGCACAGAACACUCAUGGAUU 21 8907
    BCL11A-7260 - ACGCACAGAACACUCAUGGAUU 22 8908
    BCL11A-7261 - CACGCACAGAACACUCAUGGAUU 23 8909
    BCL11A-7262 - ACACGCACAGAACACUCAUGGAUU 24 8910
    BCL11A-7263 - GCAGACGCAGCGACACUU 18 8911
    BCL11A-7264 - GGCAGACGCAGCGACACUU 19 8912
    BCL11A-7265 - GGGCAGACGCAGCGACACUU 20 8913
    BCL11A-7266 - AGGGCAGACGCAGCGACACUU 21 8914
    BCL11A-7267 - GAGGGCAGACGCAGCGACACUU 22 8915
    BCL11A-7268 - AGAGGGCAGACGCAGCGACACUU 23 8916
    BCL11A-7269 - AAGAGGGCAGACGCAGCGACACUU 24 8917
    BCL11A-7270 - CAAGAUGUGUGGCAGUUU 18 8918
    BCL11A-7271 - UCAAGAUGUGUGGCAGUUU 19 8919
    BCL11A-7272 - CUCAAGAUGUGUGGCAGUUU 20 8920
    BCL11A-7273 - GCUCAAGAUGUGUGGCAGUUU 21 8921
    BCL11A-7274 - AGCUCAAGAUGUGUGGCAGUUU 22 8922
    BCL11A-7275 - GAGCUCAAGAUGUGUGGCAGUUU 23 8923
    BCL11A-7276 - AGAGCUCAAGAUGUGUGGCAGUUU 24 8924
  • Table 16E provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 16E
    5th Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-7277 + UCUCGGUGGUGGACUAAA 18 8925
    BCL11A-7278 + GUCUCGGUGGUGGACUAAA 19 8926
    BCL11A-7279 + UGUCUCGGUGGUGGACUAAA 20 8927
    BCL11A-7280 + AUGUCUCGGUGGUGGACUAAA 21 8928
    BCL11A-7281 + GAUGUCUCGGUGGUGGACUAAA 22 8929
    BCL11A-7282 + UGAUGUCUCGGUGGUGGACUAAA 23 8930
    BCL11A-7283 + GUGAUGUCUCGGUGGUGGACUAAA 24 8931
    BCL11A-7284 + GUUCUGUGCGUGUUGCAA 18 8932
    BCL11A-7285 + UGUUCUGUGCGUGUUGCAA 19 8933
    BCL11A-7286 + GUGUUCUGUGCGUGUUGCAA 20 8934
    BCL11A-7287 + AGUGUUCUGUGCGUGUUGCAA 21 8935
    BCL11A-7288 + GAGUGUUCUGUGCGUGUUGCAA 22 8936
    BCL11A-7289 + UGAGUGUUCUGUGCGUGUUGCAA 23 8937
    BCL11A-7290 + AUGAGUGUUCUGUGCGUGUUGCAA 24 8938
    BCL11A-7291 + UCUGGGUACUACGCCGAA 18 8939
    BCL11A-7292 + CUCUGGGUACUACGCCGAA 19 8940
    BCL11A-5883 + UCUCUGGGUACUACGCCGAA 20 8941
    BCL11A-7293 + CUCUCUGGGUACUACGCCGAA 21 8942
    BCL11A-7294 + GCUCUCUGGGUACUACGCCGAA 22 8943
    BCL11A-7295 + AGCUCUCUGGGUACUACGCCGAA 23 8944
    BCL11A-7296 + GAGCUCUCUGGGUACUACGCCGAA 24 8945
    BCL11A-7297 + UCGGUGGUGGACUAAACA 18 8946
    BCL11A-7298 + CUCGGUGGUGGACUAAACA 19 8947
    BCL11A-5892 + UCUCGGUGGUGGACUAAACA 20 8948
    BCL11A-7299 + GUCUCGGUGGUGGACUAAACA 21 8949
    BCL11A-7300 + UGUCUCGGUGGUGGACUAAACA 22 8950
    BCL11A-7301 + AUGUCUCGGUGGUGGACUAAACA 23 8951
    BCL11A-7302 + GAUGUCUCGGUGGUGGACUAAACA 24 8952
    BCL11A-7303 + AGAAAGAGGUUGGAGACA 18 8953
    BCL11A-7304 + UAGAAAGAGGUUGGAGACA 19 8954
    BCL11A-7305 + CUAGAAAGAGGUUGGAGACA 20 8955
    BCL11A-7306 + CCUAGAAAGAGGUUGGAGACA 21 8956
    BCL11A-7307 + ACCUAGAAAGAGGUUGGAGACA 22 8957
    BCL11A-7308 + AACCUAGAAAGAGGUUGGAGACA 23 8958
    BCL11A-7309 + GAACCUAGAAAGAGGUUGGAGACA 24 8959
    BCL11A-7310 + UCUGCAAUAUGAAUCCCA 18 8960
    BCL11A-7311 + GUCUGCAAUAUGAAUCCCA 19 8961
    BCL11A-5899 + UGUCUGCAAUAUGAAUCCCA 20 8962
    BCL11A-7312 + UUGUCUGCAAUAUGAAUCCCA 21 8963
    BCL11A-7313 + AUUGUCUGCAAUAUGAAUCCCA 22 8964
    BCL11A-7314 + UAUUGUCUGCAAUAUGAAUCCCA 23 8965
    BCL11A-7315 + UUAUUGUCUGCAAUAUGAAUCCCA 24 8966
    BCL11A-7316 + CCUCGCUGAAGUGCUGCA 18 8967
    BCL11A-7317 + GCCUCGCUGAAGUGCUGCA 19 8968
    BCL11A-5909 + GGCCUCGCUGAAGUGCUGCA 20 8969
    BCL11A-7318 + AGGCCUCGCUGAAGUGCUGCA 21 8970
    BCL11A-7319 + AAGGCCUCGCUGAAGUGCUGCA 22 8971
    BCL11A-7320 + GAAGGCCUCGCUGAAGUGCUGCA 23 8972
    BCL11A-7321 + GGAAGGCCUCGCUGAAGUGCUGCA 24 8973
    BCL11A-7322 + GAGGAGGGGCGGAUUGCA 18 8974
    BCL11A-7323 + GGAGGAGGGGCGGAUUGCA 19 8975
    BCL11A-7324 + GGGAGGAGGGGCGGAUUGCA 20 8976
    BCL11A-7325 + AGGGAGGAGGGGCGGAUUGCA 21 8977
    BCL11A-7326 + GAGGGAGGAGGGGCGGAUUGCA 22 8978
    BCL11A-7327 + GGAGGGAGGAGGGGCGGAUUGCA 23 8979
    BCL11A-7328 + GGGAGGGAGGAGGGGCGGAUUGCA 24 8980
    BCL11A-7329 + GUUGCAGUAACCUUUGCA 18 8981
    BCL11A-7330 + GGUUGCAGUAACCUUUGCA 19 8982
    BCL11A-7331 + UGGUUGCAGUAACCUUUGCA 20 8983
    BCL11A-7332 + AUGGUUGCAGUAACCUUUGCA 21 8984
    BCL11A-7333 + AAUGGUUGCAGUAACCUUUGCA 22 8985
    BCL11A-7334 + GAAUGGUUGCAGUAACCUUUGCA 23 8986
    BCL11A-7335 + GGAAUGGUUGCAGUAACCUUUGCA 24 8987
    BCL11A-7336 + GCUUAGAGAAGGGGCUCA 18 8988
    BCL11A-7337 + CGCUUAGAGAAGGGGCUCA 19 8989
    BCL11A-7338 + GCGCUUAGAGAAGGGGCUCA 20 8990
    BCL11A-7339 + UGCGCUUAGAGAAGGGGCUCA 21 8991
    BCL11A-7340 + AUGCGCUUAGAGAAGGGGCUCA 22 8992
    BCL11A-7341 + GAUGCGCUUAGAGAAGGGGCUCA 23 8993
    BCL11A-7342 + UGAUGCGCUUAGAGAAGGGGCUCA 24 8994
    BCL11A-7343 + CGUCGGACUUGACCGUCA 18 8995
    BCL11A-7344 + UCGUCGGACUUGACCGUCA 19 8996
    BCL11A-5912 + GUCGUCGGACUUGACCGUCA 20 8997
    BCL11A-7345 + CGUCGUCGGACUUGACCGUCA 21 8998
    BCL11A-7346 + CCGUCGUCGGACUUGACCGUCA 22 8999
    BCL11A-7347 + ACCGUCGUCGGACUUGACCGUCA 23 9000
    BCL11A-7348 + GACCGUCGUCGGACUUGACCGUCA 24 9001
    BCL11A-7349 + UACCAACCCGCGGGGUCA 18 9002
    BCL11A-7350 + AUACCAACCCGCGGGGUCA 19 9003
    BCL11A-5913 + GAUACCAACCCGCGGGGUCA 20 9004
    BCL11A-7351 + GGAUACCAACCCGCGGGGUCA 21 9005
    BCL11A-7352 + GGGAUACCAACCCGCGGGGUCA 22 9006
    BCL11A-7353 + AGGGAUACCAACCCGCGGGGUCA 23 9007
    BCL11A-7354 + AAGGGAUACCAACCCGCGGGGUCA 24 9008
    BCL11A-7355 + GCUUGAUGCGCUUAGAGA 18 9009
    BCL11A-7356 + AGCUUGAUGCGCUUAGAGA 19 9010
    BCL11A-5917 + GAGCUUGAUGCGCUUAGAGA 20 9011
    BCL11A-7357 + CGAGCUUGAUGCGCUUAGAGA 21 9012
    BCL11A-7358 + UCGAGCUUGAUGCGCUUAGAGA 22 9013
    BCL11A-7359 + CUCGAGCUUGAUGCGCUUAGAGA 23 9014
    BCL11A-7360 + UCUCGAGCUUGAUGCGCUUAGAGA 24 9015
    BCL11A-7361 + CUAGAAAGAGGUUGGAGA 18 9016
    BCL11A-7362 + CCUAGAAAGAGGUUGGAGA 19 9017
    BCL11A-7363 + ACCUAGAAAGAGGUUGGAGA 20 9018
    BCL11A-7364 + AACCUAGAAAGAGGUUGGAGA 21 9019
    BCL11A-7365 + GAACCUAGAAAGAGGUUGGAGA 22 9020
    BCL11A-7366 + AGAACCUAGAAAGAGGUUGGAGA 23 9021
    BCL11A-7367 + AAGAACCUAGAAAGAGGUUGGAGA 24 9022
    BCL11A-7368 + GUGUGUGAAGAACCUAGA 18 9023
    BCL11A-7369 + GGUGUGUGAAGAACCUAGA 19 9024
    BCL11A-7370 + GGGUGUGUGAAGAACCUAGA 20 9025
    BCL11A-7371 + GGGGUGUGUGAAGAACCUAGA 21 9026
    BCL11A-7372 + GGGGGUGUGUGAAGAACCUAGA 22 9027
    BCL11A-7373 + UGGGGGUGUGUGAAGAACCUAGA 23 9028
    BCL11A-7374 + AUGGGGGUGUGUGAAGAACCUAGA 24 9029
    BCL11A-7375 + CUCUGGGUACUACGCCGA 18 9030
    BCL11A-7376 + UCUCUGGGUACUACGCCGA 19 9031
    BCL11A-7377 + CUCUCUGGGUACUACGCCGA 20 9032
    BCL11A-7378 + GCUCUCUGGGUACUACGCCGA 21 9033
    BCL11A-7379 + AGCUCUCUGGGUACUACGCCGA 22 9034
    BCL11A-7380 + GAGCUCUCUGGGUACUACGCCGA 23 9035
    BCL11A-7381 + UGAGCUCUCUGGGUACUACGCCGA 24 9036
    BCL11A-7382 + GAGGUUGGAGACAGAGGA 18 9037
    BCL11A-7383 + AGAGGUUGGAGACAGAGGA 19 9038
    BCL11A-5925 + AAGAGGUUGGAGACAGAGGA 20 9039
    BCL11A-7384 + AAAGAGGUUGGAGACAGAGGA 21 9040
    BCL11A-7385 + GAAAGAGGUUGGAGACAGAGGA 22 9041
    BCL11A-7386 + AGAAAGAGGUUGGAGACAGAGGA 23 9042
    BCL11A-7387 + UAGAAAGAGGUUGGAGACAGAGGA 24 9043
    BCL11A-7388 + GGGGCGGAUUGCAGAGGA 18 9044
    BCL11A-7389 + AGGGGCGGAUUGCAGAGGA 19 9045
    BCL11A-5926 + GAGGGGCGGAUUGCAGAGGA 20 9046
    BCL11A-7390 + GGAGGGGCGGAUUGCAGAGGA 21 9047
    BCL11A-7391 + AGGAGGGGCGGAUUGCAGAGGA 22 9048
    BCL11A-7392 + GAGGAGGGGCGGAUUGCAGAGGA 23 9049
    BCL11A-7393 + GGAGGAGGGGCGGAUUGCAGAGGA 24 9050
    BCL11A-7394 + CGGAUUGCAGAGGAGGGA 18 9051
    BCL11A-7395 + GCGGAUUGCAGAGGAGGGA 19 9052
    BCL11A-5930 + GGCGGAUUGCAGAGGAGGGA 20 9053
    BCL11A-7396 + GGGCGGAUUGCAGAGGAGGGA 21 9054
    BCL11A-7397 + GGGGCGGAUUGCAGAGGAGGGA 22 9055
    BCL11A-7398 + AGGGGCGGAUUGCAGAGGAGGGA 23 9056
    BCL11A-7399 + GAGGGGCGGAUUGCAGAGGAGGGA 24 9057
    BCL11A-7400 + CUUGACCGGGGGCUGGGA 18 9058
    BCL11A-7401 + ACUUGACCGGGGGCUGGGA 19 9059
    BCL11A-5931 + GACUUGACCGGGGGCUGGGA 20 9060
    BCL11A-7402 + GGACUUGACCGGGGGCUGGGA 21 9061
    BCL11A-7403 + UGGACUUGACCGGGGGCUGGGA 22 9062
    BCL11A-7404 + UUGGACUUGACCGGGGGCUGGGA 23 9063
    BCL11A-7405 + CUUGGACUUGACCGGGGGCUGGGA 24 9064
    BCL11A-7406 + CGCAUGACUUGGACUUGA 18 9065
    BCL11A-7407 + UCGCAUGACUUGGACUUGA 19 9066
    BCL11A-7408 + CUCGCAUGACUUGGACUUGA 20 9067
    BCL11A-7409 + ACUCGCAUGACUUGGACUUGA 21 9068
    BCL11A-7410 + AACUCGCAUGACUUGGACUUGA 22 9069
    BCL11A-7411 + GAACUCGCAUGACUUGGACUUGA 23 9070
    BCL11A-7412 + AGAACUCGCAUGACUUGGACUUGA 24 9071
    BCL11A-7413 + GGGCCCGGACCACUAAUA 18 9072
    BCL11A-7414 + CGGGCCCGGACCACUAAUA 19 9073
    BCL11A-5940 + CCGGGCCCGGACCACUAAUA 20 9074
    BCL11A-7415 + CCCGGGCCCGGACCACUAAUA 21 9075
    BCL11A-7416 + GCCCGGGCCCGGACCACUAAUA 22 9076
    BCL11A-7417 + UGCCCGGGCCCGGACCACUAAUA 23 9077
    BCL11A-7418 + CUGCCCGGGCCCGGACCACUAAUA 24 9078
    BCL11A-7419 + AGCUCUCUAAGUCUCCUA 18 9079
    BCL11A-7420 + CAGCUCUCUAAGUCUCCUA 19 9080
    BCL11A-7421 + CCAGCUCUCUAAGUCUCCUA 20 9081
    BCL11A-7422 + GCCAGCUCUCUAAGUCUCCUA 21 9082
    BCL11A-7423 + UGCCAGCUCUCUAAGUCUCCUA 22 9083
    BCL11A-7424 + CUGCCAGCUCUCUAAGUCUCCUA 23 9084
    BCL11A-7425 + CCUGCCAGCUCUCUAAGUCUCCUA 24 9085
    BCL11A-7426 + CUGGAGUCUCCGAAGCUA 18 9086
    BCL11A-7427 + UCUGGAGUCUCCGAAGCUA 19 9087
    BCL11A-5943 + GUCUGGAGUCUCCGAAGCUA 20 9088
    BCL11A-7428 + UGUCUGGAGUCUCCGAAGCUA 21 9089
    BCL11A-7429 + UUGUCUGGAGUCUCCGAAGCUA 22 9090
    BCL11A-7430 + AUUGUCUGGAGUCUCCGAAGCUA 23 9091
    BCL11A-7431 + GAUUGUCUGGAGUCUCCGAAGCUA 24 9092
    BCL11A-7432 + UCGAGCUUGAUGCGCUUA 18 9093
    BCL11A-7433 + CUCGAGCUUGAUGCGCUUA 19 9094
    BCL11A-7434 + UCUCGAGCUUGAUGCGCUUA 20 9095
    BCL11A-7435 + UUCUCGAGCUUGAUGCGCUUA 21 9096
    BCL11A-7436 + CUUCUCGAGCUUGAUGCGCUUA 22 9097
    BCL11A-7437 + CCUUCUCGAGCUUGAUGCGCUUA 23 9098
    BCL11A-7438 + UCCUUCUCGAGCUUGAUGCGCUUA 24 9099
    BCL11A-7439 + GGUAUUCUUAGCAGGUUA 18 9100
    BCL11A-7440 + UGGUAUUCUUAGCAGGUUA 19 9101
    BCL11A-7441 + CUGGUAUUCUUAGCAGGUUA 20 9102
    BCL11A-7442 + CCUGGUAUUCUUAGCAGGUUA 21 9103
    BCL11A-7443 + UCCUGGUAUUCUUAGCAGGUUA 22 9104
    BCL11A-7444 + AUCCUGGUAUUCUUAGCAGGUUA 23 9105
    BCL11A-7445 + GAUCCUGGUAUUCUUAGCAGGUUA 24 9106
    BCL11A-7446 + CUCGGUGGUGGACUAAAC 18 9107
    BCL11A-7447 + UCUCGGUGGUGGACUAAAC 19 9108
    BCL11A-5947 + GUCUCGGUGGUGGACUAAAC 20 9109
    BCL11A-7448 + UGUCUCGGUGGUGGACUAAAC 21 9110
    BCL11A-7449 + AUGUCUCGGUGGUGGACUAAAC 22 9111
    BCL11A-7450 + GAUGUCUCGGUGGUGGACUAAAC 23 9112
    BCL11A-7451 + UGAUGUCUCGGUGGUGGACUAAAC 24 9113
    BCL11A-7452 + UCCGAGGAGUGCUCCGAC 18 9114
    BCL11A-7453 + CUCCGAGGAGUGCUCCGAC 19 9115
    BCL11A-7454 + UCUCCGAGGAGUGCUCCGAC 20 9116
    BCL11A-7455 + UUCUCCGAGGAGUGCUCCGAC 21 9117
    BCL11A-7456 + GUUCUCCGAGGAGUGCUCCGAC 22 9118
    BCL11A-7457 + CGUUCUCCGAGGAGUGCUCCGAC 23 9119
    BCL11A-7458 + CCGUUCUCCGAGGAGUGCUCCGAC 24 9120
    BCL11A-7459 + AACUUGGCCACCACGGAC 18 9121
    BCL11A-7460 + GAACUUGGCCACCACGGAC 19 9122
    BCL11A-7461 + UGAACUUGGCCACCACGGAC 20 9123
    BCL11A-7462 + UUGAACUUGGCCACCACGGAC 21 9124
    BCL11A-7463 + CUUGAACUUGGCCACCACGGAC 22 9125
    BCL11A-7464 + UCUUGAACUUGGCCACCACGGAC 23 9126
    BCL11A-7465 + CUCUUGAACUUGGCCACCACGGAC 24 9127
    BCL11A-7466 + CCGCAGAACUCGCAUGAC 18 9128
    BCL11A-7467 + GCCGCAGAACUCGCAUGAC 19 9129
    BCL11A-7468 + UGCCGCAGAACUCGCAUGAC 20 9130
    BCL11A-7469 + UUGCCGCAGAACUCGCAUGAC 21 9131
    BCL11A-7470 + CUUGCCGCAGAACUCGCAUGAC 22 9132
    BCL11A-7471 + UCUUGCCGCAGAACUCGCAUGAC 23 9133
    BCL11A-7472 + GUCUUGCCGCAGAACUCGCAUGAC 24 9134
    BCL11A-7473 + GCAUGACUUGGACUUGAC 18 9135
    BCL11A-7474 + CGCAUGACUUGGACUUGAC 19 9136
    BCL11A-5957 + UCGCAUGACUUGGACUUGAC 20 9137
    BCL11A-7475 + CUCGCAUGACUUGGACUUGAC 21 9138
    BCL11A-7476 + ACUCGCAUGACUUGGACUUGAC 22 9139
    BCL11A-7477 + AACUCGCAUGACUUGGACUUGAC 23 9140
    BCL11A-7478 + GAACUCGCAUGACUUGGACUUGAC 24 9141
    BCL11A-7479 + GGGGGUGUGUGAAGAACC 18 9142
    BCL11A-7480 + UGGGGGUGUGUGAAGAACC 19 9143
    BCL11A-7481 + AUGGGGGUGUGUGAAGAACC 20 9144
    BCL11A-7482 + AAUGGGGGUGUGUGAAGAACC 21 9145
    BCL11A-7483 + GAAUGGGGGUGUGUGAAGAACC 22 9146
    BCL11A-7484 + CGAAUGGGGGUGUGUGAAGAACC 23 9147
    BCL11A-7485 + CCGAAUGGGGGUGUGUGAAGAACC 24 9148
    BCL11A-7486 + CUCUUGAACUUGGCCACC 18 9149
    BCL11A-7487 + GCUCUUGAACUUGGCCACC 19 9150
    BCL11A-7488 + CGCUCUUGAACUUGGCCACC 20 9151
    BCL11A-7489 + UCGCUCUUGAACUUGGCCACC 21 9152
    BCL11A-7490 + CUCGCUCUUGAACUUGGCCACC 22 9153
    BCL11A-7491 + UCUCGCUCUUGAACUUGGCCACC 23 9154
    BCL11A-7492 + UUCUCGCUCUUGAACUUGGCCACC 24 9155
    BCL11A-7493 + CAUGACUUGGACUUGACC 18 9156
    BCL11A-7494 + GCAUGACUUGGACUUGACC 19 9157
    BCL11A-5965 + CGCAUGACUUGGACUUGACC 20 9158
    BCL11A-7495 + UCGCAUGACUUGGACUUGACC 21 9159
    BCL11A-7496 + CUCGCAUGACUUGGACUUGACC 22 9160
    BCL11A-7497 + ACUCGCAUGACUUGGACUUGACC 23 9161
    BCL11A-7498 + AACUCGCAUGACUUGGACUUGACC 24 9162
    BCL11A-7499 + CUGAAGGGAUACCAACCC 18 9163
    BCL11A-7500 + CCUGAAGGGAUACCAACCC 19 9164
    BCL11A-7501 + UCCUGAAGGGAUACCAACCC 20 9165
    BCL11A-7502 + GUCCUGAAGGGAUACCAACCC 21 9166
    BCL11A-7503 + AGUCCUGAAGGGAUACCAACCC 22 9167
    BCL11A-7504 + UAGUCCUGAAGGGAUACCAACCC 23 9168
    BCL11A-7505 + CUAGUCCUGAAGGGAUACCAACCC 24 9169
    BCL11A-7506 + CGCCCACGACCGCGCCCC 18 9170
    BCL11A-7507 + ACGCCCACGACCGCGCCCC 19 9171
    BCL11A-3830 + CACGCCCACGACCGCGCCCC 20 9172
    BCL11A-7508 + CCACGCCCACGACCGCGCCCC 21 9173
    BCL11A-7509 + CCCACGCCCACGACCGCGCCCC 22 9174
    BCL11A-7510 + GCCCACGCCCACGACCGCGCCCC 23 9175
    BCL11A-7511 + CGCCCACGCCCACGACCGCGCCCC 24 9176
    BCL11A-7512 + GCUUUUUGGACAGGCCCC 18 9177
    BCL11A-7513 + AGCUUUUUGGACAGGCCCC 19 9178
    BCL11A-7514 + CAGCUUUUUGGACAGGCCCC 20 9179
    BCL11A-7515 + GCAGCUUUUUGGACAGGCCCC 21 9180
    BCL11A-7516 + AGCAGCUUUUUGGACAGGCCCC 22 9181
    BCL11A-7517 + CAGCAGCUUUUUGGACAGGCCCC 23 9182
    BCL11A-7518 + GCAGCAGCUUUUUGGACAGGCCCC 24 9183
    BCL11A-7519 + CCCGAGGCCGACUCGCCC 18 9184
    BCL11A-7520 + CCCCGAGGCCGACUCGCCC 19 9185
    BCL11A-5977 + CCCCCGAGGCCGACUCGCCC 20 9186
    BCL11A-7521 + CCCCCCGAGGCCGACUCGCCC 21 9187
    BCL11A-7522 + GCCCCCCGAGGCCGACUCGCCC 22 9188
    BCL11A-7523 + GGCCCCCCGAGGCCGACUCGCCC 23 9189
    BCL11A-7524 + AGGCCCCCCGAGGCCGACUCGCCC 24 9190
    BCL11A-7525 + GUCUGCAAUAUGAAUCCC 18 9191
    BCL11A-7526 + UGUCUGCAAUAUGAAUCCC 19 9192
    BCL11A-7527 + UUGUCUGCAAUAUGAAUCCC 20 9193
    BCL11A-7528 + AUUGUCUGCAAUAUGAAUCCC 21 9194
    BCL11A-7529 + UAUUGUCUGCAAUAUGAAUCCC 22 9195
    BCL11A-7530 + UUAUUGUCUGCAAUAUGAAUCCC 23 9196
    BCL11A-7531 + GUUAUUGUCUGCAAUAUGAAUCCC 24 9197
    BCL11A-7532 + UUCCCGUGCCGCUGCGCC 18 9198
    BCL11A-7533 + CUUCCCGUGCCGCUGCGCC 19 9199
    BCL11A-7534 + ACUUCCCGUGCCGCUGCGCC 20 9200
    BCL11A-7535 + CACUUCCCGUGCCGCUGCGCC 21 9201
    BCL11A-7536 + CCACUUCCCGUGCCGCUGCGCC 22 9202
    BCL11A-7537 + UCCACUUCCCGUGCCGCUGCGCC 23 9203
    BCL11A-7538 + CUCCACUUCCCGUGCCGCUGCGCC 24 9204
    BCL11A-7539 + CCCCGAGGCCGACUCGCC 18 9205
    BCL11A-7540 + CCCCCGAGGCCGACUCGCC 19 9206
    BCL11A-5989 + CCCCCCGAGGCCGACUCGCC 20 9207
    BCL11A-7541 + GCCCCCCGAGGCCGACUCGCC 21 9208
    BCL11A-7542 + GGCCCCCCGAGGCCGACUCGCC 22 9209
    BCL11A-7543 + AGGCCCCCCGAGGCCGACUCGCC 23 9210
    BCL11A-7544 + CAGGCCCCCCGAGGCCGACUCGCC 24 9211
    BCL11A-7545 + GCGCUUAUGCUUCUCGCC 18 9212
    BCL11A-7546 + CGCGCUUAUGCUUCUCGCC 19 9213
    BCL11A-7547 + CCGCGCUUAUGCUUCUCGCC 20 9214
    BCL11A-7548 + GCCGCGCUUAUGCUUCUCGCC 21 9215
    BCL11A-7549 + GGCCGCGCUUAUGCUUCUCGCC 22 9216
    BCL11A-7550 + UGGCCGCGCUUAUGCUUCUCGCC 23 9217
    BCL11A-7551 + GUGGCCGCGCUUAUGCUUCUCGCC 24 9218
    BCL11A-7552 + GGGAGGGGGGGCGUCGCC 18 9219
    BCL11A-7553 + AGGGAGGGGGGGCGUCGCC 19 9220
    BCL11A-5990 + GAGGGAGGGGGGGCGUCGCC 20 9221
    BCL11A-7554 + GGAGGGAGGGGGGGCGUCGCC 21 9222
    BCL11A-7555 + AGGAGGGAGGGGGGGCGUCGCC 22 9223
    BCL11A-7556 + GAGGAGGGAGGGGGGGCGUCGCC 23 9224
    BCL11A-7557 + AGAGGAGGGAGGGGGGGCGUCGCC 24 9225
    BCL11A-7558 + CAUAGGGCUGGGCCGGCC 18 9226
    BCL11A-7559 + GCAUAGGGCUGGGCCGGCC 19 9227
    BCL11A-5991 + UGCAUAGGGCUGGGCCGGCC 20 9228
    BCL11A-7560 + UUGCAUAGGGCUGGGCCGGCC 21 9229
    BCL11A-7561 + UUUGCAUAGGGCUGGGCCGGCC 22 9230
    BCL11A-7562 + CUUUGCAUAGGGCUGGGCCGGCC 23 9231
    BCL11A-7563 + CCUUUGCAUAGGGCUGGGCCGGCC 24 9232
    BCL11A-7564 + GUGUUGGGCAUCGCGGCC 18 9233
    BCL11A-7565 + CGUGUUGGGCAUCGCGGCC 19 9234
    BCL11A-5993 + CCGUGUUGGGCAUCGCGGCC 20 9235
    BCL11A-7566 + UCCGUGUUGGGCAUCGCGGCC 21 9236
    BCL11A-7567 + CUCCGUGUUGGGCAUCGCGGCC 22 9237
    BCL11A-7568 + UCUCCGUGUUGGGCAUCGCGGCC 23 9238
    BCL11A-7569 + UUCUCCGUGUUGGGCAUCGCGGCC 24 9239
    BCL11A-7570 + AGGGAUCUUUGAGCUGCC 18 9240
    BCL11A-7571 + AAGGGAUCUUUGAGCUGCC 19 9241
    BCL11A-6000 + GAAGGGAUCUUUGAGCUGCC 20 9242
    BCL11A-7572 + GGAAGGGAUCUUUGAGCUGCC 21 9243
    BCL11A-7573 + AGGAAGGGAUCUUUGAGCUGCC 22 9244
    BCL11A-7574 + AAGGAAGGGAUCUUUGAGCUGCC 23 9245
    BCL11A-7575 + UAAGGAAGGGAUCUUUGAGCUGCC 24 9246
    BCL11A-7576 + AUCCCUCCGUCCAGCUCC 18 9247
    BCL11A-7577 + GAUCCCUCCGUCCAGCUCC 19 9248
    BCL11A-7578 + AGAUCCCUCCGUCCAGCUCC 20 9249
    BCL11A-7579 + GAGAUCCCUCCGUCCAGCUCC 21 9250
    BCL11A-7580 + CGAGAUCCCUCCGUCCAGCUCC 22 9251
    BCL11A-7581 + CCGAGAUCCCUCCGUCCAGCUCC 23 9252
    BCL11A-7582 + CCCGAGAUCCCUCCGUCCAGCUCC 24 9253
    BCL11A-7583 + CCAGCUCUCUAAGUCUCC 18 9254
    BCL11A-7584 + GCCAGCUCUCUAAGUCUCC 19 9255
    BCL11A-7585 + UGCCAGCUCUCUAAGUCUCC 20 9256
    BCL11A-7586 + CUGCCAGCUCUCUAAGUCUCC 21 9257
    BCL11A-7587 + CCUGCCAGCUCUCUAAGUCUCC 22 9258
    BCL11A-7588 + CCCUGCCAGCUCUCUAAGUCUCC 23 9259
    BCL11A-7589 + UCCCUGCCAGCUCUCUAAGUCUCC 24 9260
    BCL11A-7590 + CGCAAACUCCCGUUCUCC 18 9261
    BCL11A-7591 + GCGCAAACUCCCGUUCUCC 19 9262
    BCL11A-7592 + AGCGCAAACUCCCGUUCUCC 20 9263
    BCL11A-7593 + AAGCGCAAACUCCCGUUCUCC 21 9264
    BCL11A-7594 + GAAGCGCAAACUCCCGUUCUCC 22 9265
    BCL11A-7595 + AGAAGCGCAAACUCCCGUUCUCC 23 9266
    BCL11A-7596 + GAGAAGCGCAAACUCCCGUUCUCC 24 9267
    BCL11A-7597 + UCGCUGGUGCCGGGUUCC 18 9268
    BCL11A-7598 + GUCGCUGGUGCCGGGUUCC 19 9269
    BCL11A-6011 + AGUCGCUGGUGCCGGGUUCC 20 9270
    BCL11A-7599 + AAGUCGCUGGUGCCGGGUUCC 21 9271
    BCL11A-7600 + CAAGUCGCUGGUGCCGGGUUCC 22 9272
    BCL11A-7601 + CCAAGUCGCUGGUGCCGGGUUCC 23 9273
    BCL11A-7602 + ACCAAGUCGCUGGUGCCGGGUUCC 24 9274
    BCL11A-7603 + GCCGCCUCCAGGCUCAGC 18 9275
    BCL11A-7604 + CGCCGCCUCCAGGCUCAGC 19 9276
    BCL11A-7605 + GCGCCGCCUCCAGGCUCAGC 20 9277
    BCL11A-7606 + CGCGCCGCCUCCAGGCUCAGC 21 9278
    BCL11A-7607 + GCGCGCCGCCUCCAGGCUCAGC 22 9279
    BCL11A-7608 + GGCGCGCCGCCUCCAGGCUCAGC 23 9280
    BCL11A-7609 + UGGCGCGCCGCCUCCAGGCUCAGC 24 9281
    BCL11A-7610 + AGAAGGGGCUCAGCGAGC 18 9282
    BCL11A-7611 + GAGAAGGGGCUCAGCGAGC 19 9283
    BCL11A-6013 + AGAGAAGGGGCUCAGCGAGC 20 9284
    BCL11A-7612 + UAGAGAAGGGGCUCAGCGAGC 21 9285
    BCL11A-7613 + UUAGAGAAGGGGCUCAGCGAGC 22 9286
    BCL11A-7614 + CUUAGAGAAGGGGCUCAGCGAGC 23 9287
    BCL11A-7615 + GCUUAGAGAAGGGGCUCAGCGAGC 24 9288
    BCL11A-7616 + CCCCCGAGGCCGACUCGC 18 9289
    BCL11A-7617 + CCCCCCGAGGCCGACUCGC 19 9290
    BCL11A-7618 + GCCCCCCGAGGCCGACUCGC 20 9291
    BCL11A-7619 + GGCCCCCCGAGGCCGACUCGC 21 9292
    BCL11A-7620 + AGGCCCCCCGAGGCCGACUCGC 22 9293
    BCL11A-7621 + CAGGCCCCCCGAGGCCGACUCGC 23 9294
    BCL11A-7622 + ACAGGCCCCCCGAGGCCGACUCGC 24 9295
    BCL11A-7623 + AGGGAGGGGGGGCGUCGC 18 9296
    BCL11A-7624 + GAGGGAGGGGGGGCGUCGC 19 9297
    BCL11A-7625 + GGAGGGAGGGGGGGCGUCGC 20 9298
    BCL11A-7626 + AGGAGGGAGGGGGGGCGUCGC 21 9299
    BCL11A-7627 + GAGGAGGGAGGGGGGGCGUCGC 22 9300
    BCL11A-7628 + AGAGGAGGGAGGGGGGGCGUCGC 23 9301
    BCL11A-7629 + CAGAGGAGGGAGGGGGGGCGUCGC 24 9302
    BCL11A-7630 + AGCGCCCUUCUGCCAGGC 18 9303
    BCL11A-7631 + AAGCGCCCUUCUGCCAGGC 19 9304
    BCL11A-6027 + AAAGCGCCCUUCUGCCAGGC 20 9305
    BCL11A-7632 + GAAAGCGCCCUUCUGCCAGGC 21 9306
    BCL11A-7633 + GGAAAGCGCCCUUCUGCCAGGC 22 9307
    BCL11A-7634 + UGGAAAGCGCCCUUCUGCCAGGC 23 9308
    BCL11A-7635 + GUGGAAAGCGCCCUUCUGCCAGGC 24 9309
    BCL11A-7636 + GCAUAGGGCUGGGCCGGC 18 9310
    BCL11A-7637 + UGCAUAGGGCUGGGCCGGC 19 9311
    BCL11A-7638 + UUGCAUAGGGCUGGGCCGGC 20 9312
    BCL11A-7639 + UUUGCAUAGGGCUGGGCCGGC 21 9313
    BCL11A-7640 + CUUUGCAUAGGGCUGGGCCGGC 22 9314
    BCL11A-7641 + CCUUUGCAUAGGGCUGGGCCGGC 23 9315
    BCL11A-7642 + ACCUUUGCAUAGGGCUGGGCCGGC 24 9316
    BCL11A-7643 + CGUGUUGGGCAUCGCGGC 18 9317
    BCL11A-7644 + CCGUGUUGGGCAUCGCGGC 19 9318
    BCL11A-6028 + UCCGUGUUGGGCAUCGCGGC 20 9319
    BCL11A-7645 + CUCCGUGUUGGGCAUCGCGGC 21 9320
    BCL11A-7646 + UCUCCGUGUUGGGCAUCGCGGC 22 9321
    BCL11A-7647 + UUCUCCGUGUUGGGCAUCGCGGC 23 9322
    BCL11A-7648 + GUUCUCCGUGUUGGGCAUCGCGGC 24 9323
    BCL11A-7649 + AGCUGGGCCUGCCCGGGC 18 9324
    BCL11A-7650 + GAGCUGGGCCUGCCCGGGC 19 9325
    BCL11A-7651 + UGAGCUGGGCCUGCCCGGGC 20 9326
    BCL11A-7652 + UUGAGCUGGGCCUGCCCGGGC 21 9327
    BCL11A-7653 + UUUGAGCUGGGCCUGCCCGGGC 22 9328
    BCL11A-7654 + UUUUGAGCUGGGCCUGCCCGGGC 23 9329
    BCL11A-7655 + CUUUUGAGCUGGGCCUGCCCGGGC 24 9330
    BCL11A-7656 + UUGGACUUGACCGGGGGC 18 9331
    BCL11A-7657 + CUUGGACUUGACCGGGGGC 19 9332
    BCL11A-6032 + ACUUGGACUUGACCGGGGGC 20 9333
    BCL11A-7658 + GACUUGGACUUGACCGGGGGC 21 9334
    BCL11A-7659 + UGACUUGGACUUGACCGGGGGC 22 9335
    BCL11A-7660 + AUGACUUGGACUUGACCGGGGGC 23 9336
    BCL11A-7661 + CAUGACUUGGACUUGACCGGGGGC 24 9337
    BCL11A-7662 + CCUAGAGAAAUCCAUGGC 18 9338
    BCL11A-7663 + UCCUAGAGAAAUCCAUGGC 19 9339
    BCL11A-6035 + CUCCUAGAGAAAUCCAUGGC 20 9340
    BCL11A-7664 + UCUCCUAGAGAAAUCCAUGGC 21 9341
    BCL11A-7665 + GUCUCCUAGAGAAAUCCAUGGC 22 9342
    BCL11A-7666 + AGUCUCCUAGAGAAAUCCAUGGC 23 9343
    BCL11A-7667 + AAGUCUCCUAGAGAAAUCCAUGGC 24 9344
    BCL11A-7668 + AUCCCAUGGAGAGGUGGC 18 9345
    BCL11A-7669 + AAUCCCAUGGAGAGGUGGC 19 9346
    BCL11A-6038 + GAAUCCCAUGGAGAGGUGGC 20 9347
    BCL11A-7670 + UGAAUCCCAUGGAGAGGUGGC 21 9348
    BCL11A-7671 + AUGAAUCCCAUGGAGAGGUGGC 22 9349
    BCL11A-7672 + UAUGAAUCCCAUGGAGAGGUGGC 23 9350
    BCL11A-7673 + AUAUGAAUCCCAUGGAGAGGUGGC 24 9351
    BCL11A-7674 + ACUCGGGUGAUGGGUGGC 18 9352
    BCL11A-7675 + CACUCGGGUGAUGGGUGGC 19 9353
    BCL11A-7676 + GCACUCGGGUGAUGGGUGGC 20 9354
    BCL11A-7677 + GGCACUCGGGUGAUGGGUGGC 21 9355
    BCL11A-7678 + AGGCACUCGGGUGAUGGGUGGC 22 9356
    BCL11A-7679 + AAGGCACUCGGGUGAUGGGUGGC 23 9357
    BCL11A-7680 + AAAGGCACUCGGGUGAUGGGUGGC 24 9358
    BCL11A-7681 + CUUUUGAGCUGGGCCUGC 18 9359
    BCL11A-7682 + UCUUUUGAGCUGGGCCUGC 19 9360
    BCL11A-7683 + CUCUUUUGAGCUGGGCCUGC 20 9361
    BCL11A-7684 + CCUCUUUUGAGCUGGGCCUGC 21 9362
    BCL11A-7685 + CCCUCUUUUGAGCUGGGCCUGC 22 9363
    BCL11A-7686 + GCCCUCUUUUGAGCUGGGCCUGC 23 9364
    BCL11A-7687 + UGCCCUCUUUUGAGCUGGGCCUGC 24 9365
    BCL11A-7688 + AAGGGAUCUUUGAGCUGC 18 9366
    BCL11A-7689 + GAAGGGAUCUUUGAGCUGC 19 9367
    BCL11A-7690 + GGAAGGGAUCUUUGAGCUGC 20 9368
    BCL11A-7691 + AGGAAGGGAUCUUUGAGCUGC 21 9369
    BCL11A-7692 + AAGGAAGGGAUCUUUGAGCUGC 22 9370
    BCL11A-7693 + UAAGGAAGGGAUCUUUGAGCUGC 23 9371
    BCL11A-7694 + CUAAGGAAGGGAUCUUUGAGCUGC 24 9372
    BCL11A-7695 + GCCUCGCUGAAGUGCUGC 18 9373
    BCL11A-7696 + GGCCUCGCUGAAGUGCUGC 19 9374
    BCL11A-7697 + AGGCCUCGCUGAAGUGCUGC 20 9375
    BCL11A-7698 + AAGGCCUCGCUGAAGUGCUGC 21 9376
    BCL11A-7699 + GAAGGCCUCGCUGAAGUGCUGC 22 9377
    BCL11A-7700 + GGAAGGCCUCGCUGAAGUGCUGC 23 9378
    BCL11A-7701 + UGGAAGGCCUCGCUGAAGUGCUGC 24 9379
    BCL11A-7702 + GUGUUCUGUGCGUGUUGC 18 9380
    BCL11A-7703 + AGUGUUCUGUGCGUGUUGC 19 9381
    BCL11A-7704 + GAGUGUUCUGUGCGUGUUGC 20 9382
    BCL11A-7705 + UGAGUGUUCUGUGCGUGUUGC 21 9383
    BCL11A-7706 + AUGAGUGUUCUGUGCGUGUUGC 22 9384
    BCL11A-7707 + CAUGAGUGUUCUGUGCGUGUUGC 23 9385
    BCL11A-7708 + CCAUGAGUGUUCUGUGCGUGUUGC 24 9386
    BCL11A-7709 + CGAAAACUGCCACACAUC 18 9387
    BCL11A-7710 + CCGAAAACUGCCACACAUC 19 9388
    BCL11A-7711 + UCCGAAAACUGCCACACAUC 20 9389
    BCL11A-7712 + AUCCGAAAACUGCCACACAUC 21 9390
    BCL11A-7713 + CAUCCGAAAACUGCCACACAUC 22 9391
    BCL11A-7714 + CCAUCCGAAAACUGCCACACAUC 23 9392
    BCL11A-7715 + UCCAUCCGAAAACUGCCACACAUC 24 9393
    BCL11A-7716 + UUGGGGUCGUUCUCGCUC 18 9394
    BCL11A-7717 + GUUGGGGUCGUUCUCGCUC 19 9395
    BCL11A-7718 + GGUUGGGGUCGUUCUCGCUC 20 9396
    BCL11A-7719 + AGGUUGGGGUCGUUCUCGCUC 21 9397
    BCL11A-7720 + CAGGUUGGGGUCGUUCUCGCUC 22 9398
    BCL11A-7721 + UCAGGUUGGGGUCGUUCUCGCUC 23 9399
    BCL11A-7722 + AUCAGGUUGGGGUCGUUCUCGCUC 24 9400
    BCL11A-7723 + CUCAGAACUUAAGGGCUC 18 9401
    BCL11A-7724 + UCUCAGAACUUAAGGGCUC 19 9402
    BCL11A-7725 + UUCUCAGAACUUAAGGGCUC 20 9403
    BCL11A-7726 + UUUCUCAGAACUUAAGGGCUC 21 9404
    BCL11A-7727 + UUUUCUCAGAACUUAAGGGCUC 22 9405
    BCL11A-7728 + AUUUUCUCAGAACUUAAGGGCUC 23 9406
    BCL11A-7729 + AAUUUUCUCAGAACUUAAGGGCUC 24 9407
    BCL11A-7730 + GACAUUCUGCACCUAGUC 18 9408
    BCL11A-7731 + GGACAUUCUGCACCUAGUC 19 9409
    BCL11A-7732 + AGGACAUUCUGCACCUAGUC 20 9410
    BCL11A-7733 + AAGGACAUUCUGCACCUAGUC 21 9411
    BCL11A-7734 + GAAGGACAUUCUGCACCUAGUC 22 9412
    BCL11A-7735 + GGAAGGACAUUCUGCACCUAGUC 23 9413
    BCL11A-7736 + GGGAAGGACAUUCUGCACCUAGUC 24 9414
    BCL11A-7737 + UCGUCGGACUUGACCGUC 18 9415
    BCL11A-7738 + GUCGUCGGACUUGACCGUC 19 9416
    BCL11A-7739 + CGUCGUCGGACUUGACCGUC 20 9417
    BCL11A-7740 + CCGUCGUCGGACUUGACCGUC 21 9418
    BCL11A-7741 + ACCGUCGUCGGACUUGACCGUC 22 9419
    BCL11A-7742 + GACCGUCGUCGGACUUGACCGUC 23 9420
    BCL11A-7743 + AGACCGUCGUCGGACUUGACCGUC 24 9421
    BCL11A-7744 + AUACCAACCCGCGGGGUC 18 9422
    BCL11A-7745 + GAUACCAACCCGCGGGGUC 19 9423
    BCL11A-6052 + GGAUACCAACCCGCGGGGUC 20 9424
    BCL11A-7746 + GGGAUACCAACCCGCGGGGUC 21 9425
    BCL11A-7747 + AGGGAUACCAACCCGCGGGGUC 22 9426
    BCL11A-7748 + AAGGGAUACCAACCCGCGGGGUC 23 9427
    BCL11A-7749 + GAAGGGAUACCAACCCGCGGGGUC 24 9428
    BCL11A-7750 + GGCAGGUCGAACUCCUUC 18 9429
    BCL11A-7751 + GGGCAGGUCGAACUCCUUC 19 9430
    BCL11A-7752 + GGGGCAGGUCGAACUCCUUC 20 9431
    BCL11A-7753 + GGGGGCAGGUCGAACUCCUUC 21 9432
    BCL11A-7754 + CGGGGGCAGGUCGAACUCCUUC 22 9433
    BCL11A-7755 + CCGGGGGCAGGUCGAACUCCUUC 23 9434
    BCL11A-7756 + GCCGGGGGCAGGUCGAACUCCUUC 24 9435
    BCL11A-7757 + GUCGCUGGUGCCGGGUUC 18 9436
    BCL11A-7758 + AGUCGCUGGUGCCGGGUUC 19 9437
    BCL11A-6058 + AAGUCGCUGGUGCCGGGUUC 20 9438
    BCL11A-7759 + CAAGUCGCUGGUGCCGGGUUC 21 9439
    BCL11A-7760 + CCAAGUCGCUGGUGCCGGGUUC 22 9440
    BCL11A-7761 + ACCAAGUCGCUGGUGCCGGGUUC 23 9441
    BCL11A-7762 + CACCAAGUCGCUGGUGCCGGGUUC 24 9442
    BCL11A-7763 + CGGUGGUGGACUAAACAG 18 9443
    BCL11A-7764 + UCGGUGGUGGACUAAACAG 19 9444
    BCL11A-6063 + CUCGGUGGUGGACUAAACAG 20 9445
    BCL11A-7765 + UCUCGGUGGUGGACUAAACAG 21 9446
    BCL11A-7766 + GUCUCGGUGGUGGACUAAACAG 22 9447
    BCL11A-7767 + UGUCUCGGUGGUGGACUAAACAG 23 9448
    BCL11A-7768 + AUGUCUCGGUGGUGGACUAAACAG 24 9449
    BCL11A-7769 + GAAAGAGGUUGGAGACAG 18 9450
    BCL11A-7770 + AGAAAGAGGUUGGAGACAG 19 9451
    BCL11A-6064 + UAGAAAGAGGUUGGAGACAG 20 9452
    BCL11A-7771 + CUAGAAAGAGGUUGGAGACAG 21 9453
    BCL11A-7772 + CCUAGAAAGAGGUUGGAGACAG 22 9454
    BCL11A-7773 + ACCUAGAAAGAGGUUGGAGACAG 23 9455
    BCL11A-7774 + AACCUAGAAAGAGGUUGGAGACAG 24 9456
    BCL11A-7775 + AGGAGGGGCGGAUUGCAG 18 9457
    BCL11A-7776 + GAGGAGGGGCGGAUUGCAG 19 9458
    BCL11A-6069 + GGAGGAGGGGCGGAUUGCAG 20 9459
    BCL11A-7777 + GGGAGGAGGGGCGGAUUGCAG 21 9460
    BCL11A-7778 + AGGGAGGAGGGGCGGAUUGCAG 22 9461
    BCL11A-7779 + GAGGGAGGAGGGGCGGAUUGCAG 23 9462
    BCL11A-7780 + GGAGGGAGGAGGGGCGGAUUGCAG 24 9463
    BCL11A-7781 + AAGAGGUUGGAGACAGAG 18 9464
    BCL11A-7782 + AAAGAGGUUGGAGACAGAG 19 9465
    BCL11A-7783 + GAAAGAGGUUGGAGACAGAG 20 9466
    BCL11A-7784 + AGAAAGAGGUUGGAGACAGAG 21 9467
    BCL11A-7785 + UAGAAAGAGGUUGGAGACAGAG 22 9468
    BCL11A-7786 + CUAGAAAGAGGUUGGAGACAGAG 23 9469
    BCL11A-7787 + CCUAGAAAGAGGUUGGAGACAGAG 24 9470
    BCL11A-7788 + GAGGGGCGGAUUGCAGAG 18 9471
    BCL11A-7789 + GGAGGGGCGGAUUGCAGAG 19 9472
    BCL11A-7790 + AGGAGGGGCGGAUUGCAGAG 20 9473
    BCL11A-7791 + GAGGAGGGGCGGAUUGCAGAG 21 9474
    BCL11A-7792 + GGAGGAGGGGCGGAUUGCAGAG 22 9475
    BCL11A-7793 + GGGAGGAGGGGCGGAUUGCAGAG 23 9476
    BCL11A-7794 + AGGGAGGAGGGGCGGAUUGCAGAG 24 9477
    BCL11A-7795 + AGCUUGAUGCGCUUAGAG 18 9478
    BCL11A-7796 + GAGCUUGAUGCGCUUAGAG 19 9479
    BCL11A-7797 + CGAGCUUGAUGCGCUUAGAG 20 9480
    BCL11A-7798 + UCGAGCUUGAUGCGCUUAGAG 21 9481
    BCL11A-7799 + CUCGAGCUUGAUGCGCUUAGAG 22 9482
    BCL11A-7800 + UCUCGAGCUUGAUGCGCUUAGAG 23 9483
    BCL11A-7801 + UUCUCGAGCUUGAUGCGCUUAGAG 24 9484
    BCL11A-7802 + GAGAAGGGGCUCAGCGAG 18 9485
    BCL11A-7803 + AGAGAAGGGGCUCAGCGAG 19 9486
    BCL11A-7804 + UAGAGAAGGGGCUCAGCGAG 20 9487
    BCL11A-7805 + UUAGAGAAGGGGCUCAGCGAG 21 9488
    BCL11A-7806 + CUUAGAGAAGGGGCUCAGCGAG 22 9489
    BCL11A-7807 + GCUUAGAGAAGGGGCUCAGCGAG 23 9490
    BCL11A-7808 + CGCUUAGAGAAGGGGCUCAGCGAG 24 9491
    BCL11A-7809 + GGAUUGCAGAGGAGGGAG 18 9492
    BCL11A-7810 + CGGAUUGCAGAGGAGGGAG 19 9493
    BCL11A-6075 + GCGGAUUGCAGAGGAGGGAG 20 9494
    BCL11A-7811 + GGCGGAUUGCAGAGGAGGGAG 21 9495
    BCL11A-7812 + GGGCGGAUUGCAGAGGAGGGAG 22 9496
    BCL11A-7813 + GGGGCGGAUUGCAGAGGAGGGAG 23 9497
    BCL11A-7814 + AGGGGCGGAUUGCAGAGGAGGGAG 24 9498
    BCL11A-7815 + CCGGGGGCUGGGAGGGAG 18 9499
    BCL11A-7816 + ACCGGGGGCUGGGAGGGAG 19 9500
    BCL11A-7817 + GACCGGGGGCUGGGAGGGAG 20 9501
    BCL11A-7818 + UGACCGGGGGCUGGGAGGGAG 21 9502
    BCL11A-7819 + UUGACCGGGGGCUGGGAGGGAG 22 9503
    BCL11A-7820 + CUUGACCGGGGGCUGGGAGGGAG 23 9504
    BCL11A-7821 + ACUUGACCGGGGGCUGGGAGGGAG 24 9505
    BCL11A-7822 + CUGAAGUGCUGCAUGGAG 18 9506
    BCL11A-7823 + GCUGAAGUGCUGCAUGGAG 19 9507
    BCL11A-7824 + CGCUGAAGUGCUGCAUGGAG 20 9508
    BCL11A-7825 + UCGCUGAAGUGCUGCAUGGAG 21 9509
    BCL11A-7826 + CUCGCUGAAGUGCUGCAUGGAG 22 9510
    BCL11A-7827 + CCUCGCUGAAGUGCUGCAUGGAG 23 9511
    BCL11A-7828 + GCCUCGCUGAAGUGCUGCAUGGAG 24 9512
    BCL11A-7829 + CGUCUGCCCUCUUUUGAG 18 9513
    BCL11A-7830 + GCGUCUGCCCUCUUUUGAG 19 9514
    BCL11A-7831 + UGCGUCUGCCCUCUUUUGAG 20 9515
    BCL11A-7832 + CUGCGUCUGCCCUCUUUUGAG 21 9516
    BCL11A-7833 + GCUGCGUCUGCCCUCUUUUGAG 22 9517
    BCL11A-7834 + CGCUGCGUCUGCCCUCUUUUGAG 23 9518
    BCL11A-7835 + UCGCUGCGUCUGCCCUCUUUUGAG 24 9519
    BCL11A-7836 + CCGAGGAGUGCUCCGACG 18 9520
    BCL11A-7837 + UCCGAGGAGUGCUCCGACG 19 9521
    BCL11A-6080 + CUCCGAGGAGUGCUCCGACG 20 9522
    BCL11A-7838 + UCUCCGAGGAGUGCUCCGACG 21 9523
    BCL11A-7839 + UUCUCCGAGGAGUGCUCCGACG 22 9524
    BCL11A-7840 + GUUCUCCGAGGAGUGCUCCGACG 23 9525
    BCL11A-7841 + CGUUCUCCGAGGAGUGCUCCGACG 24 9526
    BCL11A-7842 + ACCAUGCCCUGCAUGACG 18 9527
    BCL11A-7843 + CACCAUGCCCUGCAUGACG 19 9528
    BCL11A-7844 + GCACCAUGCCCUGCAUGACG 20 9529
    BCL11A-7845 + AGCACCAUGCCCUGCAUGACG 21 9530
    BCL11A-7846 + GAGCACCAUGCCCUGCAUGACG 22 9531
    BCL11A-7847 + UGAGCACCAUGCCCUGCAUGACG 23 9532
    BCL11A-7848 + CUGAGCACCAUGCCCUGCAUGACG 24 9533
    BCL11A-7849 + CCGAGGCCGACUCGCCCG 18 9534
    BCL11A-7850 + CCCGAGGCCGACUCGCCCG 19 9535
    BCL11A-6088 + CCCCGAGGCCGACUCGCCCG 20 9536
    BCL11A-7851 + CCCCCGAGGCCGACUCGCCCG 21 9537
    BCL11A-7852 + CCCCCCGAGGCCGACUCGCCCG 22 9538
    BCL11A-7853 + GCCCCCCGAGGCCGACUCGCCCG 23 9539
    BCL11A-7854 + GGCCCCCCGAGGCCGACUCGCCCG 24 9540
    BCL11A-7855 + CUGGAGGCCGCGUAGCCG 18 9541
    BCL11A-7856 + CCUGGAGGCCGCGUAGCCG 19 9542
    BCL11A-7857 + GCCUGGAGGCCGCGUAGCCG 20 9543
    BCL11A-7858 + UGCCUGGAGGCCGCGUAGCCG 21 9544
    BCL11A-7859 + CUGCCUGGAGGCCGCGUAGCCG 22 9545
    BCL11A-7860 + GCUGCCUGGAGGCCGCGUAGCCG 23 9546
    BCL11A-7861 + AGCUGCCUGGAGGCCGCGUAGCCG 24 9547
    BCL11A-7862 + AAUUUGAACGUCUUGCCG 18 9548
    BCL11A-7863 + AAAUUUGAACGUCUUGCCG 19 9549
    BCL11A-7864 + GAAAUUUGAACGUCUUGCCG 20 9550
    BCL11A-7865 + UGAAAUUUGAACGUCUUGCCG 21 9551
    BCL11A-7866 + CUGAAAUUUGAACGUCUUGCCG 22 9552
    BCL11A-7867 + UCUGAAAUUUGAACGUCUUGCCG 23 9553
    BCL11A-7868 + CUCUGAAAUUUGAACGUCUUGCCG 24 9554
    BCL11A-7869 + UCUCCGAGGAGUGCUCCG 18 9555
    BCL11A-7870 + UUCUCCGAGGAGUGCUCCG 19 9556
    BCL11A-7871 + GUUCUCCGAGGAGUGCUCCG 20 9557
    BCL11A-7872 + CGUUCUCCGAGGAGUGCUCCG 21 9558
    BCL11A-7873 + CCGUUCUCCGAGGAGUGCUCCG 22 9559
    BCL11A-7874 + CCCGUUCUCCGAGGAGUGCUCCG 23 9560
    BCL11A-7875 + UCCCGUUCUCCGAGGAGUGCUCCG 24 9561
    BCL11A-7876 + CGCUGGUGCCGGGUUCCG 18 9562
    BCL11A-7877 + UCGCUGGUGCCGGGUUCCG 19 9563
    BCL11A-6096 + GUCGCUGGUGCCGGGUUCCG 20 9564
    BCL11A-7878 + AGUCGCUGGUGCCGGGUUCCG 21 9565
    BCL11A-7879 + AAGUCGCUGGUGCCGGGUUCCG 22 9566
    BCL11A-7880 + CAAGUCGCUGGUGCCGGGUUCCG 23 9567
    BCL11A-7881 + CCAAGUCGCUGGUGCCGGGUUCCG 24 9568
    BCL11A-7882 + GCCGGCCUGGGGACAGCG 18 9569
    BCL11A-7883 + GGCCGGCCUGGGGACAGCG 19 9570
    BCL11A-7884 + GGGCCGGCCUGGGGACAGCG 20 9571
    BCL11A-7885 + UGGGCCGGCCUGGGGACAGCG 21 9572
    BCL11A-7886 + CUGGGCCGGCCUGGGGACAGCG 22 9573
    BCL11A-7887 + GCUGGGCCGGCCUGGGGACAGCG 23 9574
    BCL11A-7888 + GGCUGGGCCGGCCUGGGGACAGCG 24 9575
    BCL11A-7889 + GGUUCCGGGGAGCUGGCG 18 9576
    BCL11A-7890 + GGGUUCCGGGGAGCUGGCG 19 9577
    BCL11A-7891 + CGGGUUCCGGGGAGCUGGCG 20 9578
    BCL11A-7892 + CCGGGUUCCGGGGAGCUGGCG 21 9579
    BCL11A-7893 + GCCGGGUUCCGGGGAGCUGGCG 22 9580
    BCL11A-7894 + UGCCGGGUUCCGGGGAGCUGGCG 23 9581
    BCL11A-7895 + GUGCCGGGUUCCGGGGAGCUGGCG 24 9582
    BCL11A-7896 + CCCCAGGCGCUCUAUGCG 18 9583
    BCL11A-7897 + CCCCCAGGCGCUCUAUGCG 19 9584
    BCL11A-7898 + GCCCCCAGGCGCUCUAUGCG 20 9585
    BCL11A-7899 + CGCCCCCAGGCGCUCUAUGCG 21 9586
    BCL11A-7900 + CCGCCCCCAGGCGCUCUAUGCG 22 9587
    BCL11A-7901 + UCCGCCCCCAGGCGCUCUAUGCG 23 9588
    BCL11A-7902 + UUCCGCCCCCAGGCGCUCUAUGCG 24 9589
    BCL11A-7903 + ACCUGGUGGAAGGCCUCG 18 9590
    BCL11A-7904 + GACCUGGUGGAAGGCCUCG 19 9591
    BCL11A-7905 + GGACCUGGUGGAAGGCCUCG 20 9592
    BCL11A-7906 + AGGACCUGGUGGAAGGCCUCG 21 9593
    BCL11A-7907 + CAGGACCUGGUGGAAGGCCUCG 22 9594
    BCL11A-7908 + CCAGGACCUGGUGGAAGGCCUCG 23 9595
    BCL11A-7909 + CCCAGGACCUGGUGGAAGGCCUCG 24 9596
    BCL11A-7910 + GCGGUGGAGAGACCGUCG 18 9597
    BCL11A-7911 + GGCGGUGGAGAGACCGUCG 19 9598
    BCL11A-7912 + UGGCGGUGGAGAGACCGUCG 20 9599
    BCL11A-7913 + CUGGCGGUGGAGAGACCGUCG 21 9600
    BCL11A-7914 + GCUGGCGGUGGAGAGACCGUCG 22 9601
    BCL11A-7915 + AGCUGGCGGUGGAGAGACCGUCG 23 9602
    BCL11A-7916 + GAGCUGGCGGUGGAGAGACCGUCG 24 9603
    BCL11A-7917 + GAGUCUCCGAAGCUAAGG 18 9604
    BCL11A-7918 + GGAGUCUCCGAAGCUAAGG 19 9605
    BCL11A-7919 + UGGAGUCUCCGAAGCUAAGG 20 9606
    BCL11A-7920 + CUGGAGUCUCCGAAGCUAAGG 21 9607
    BCL11A-7921 + UCUGGAGUCUCCGAAGCUAAGG 22 9608
    BCL11A-7922 + GUCUGGAGUCUCCGAAGCUAAGG 23 9609
    BCL11A-7923 + UGUCUGGAGUCUCCGAAGCUAAGG 24 9610
    BCL11A-7924 + GGUGGUGGACUAAACAGG 18 9611
    BCL11A-7925 + CGGUGGUGGACUAAACAGG 19 9612
    BCL11A-6111 + UCGGUGGUGGACUAAACAGG 20 9613
    BCL11A-7926 + CUCGGUGGUGGACUAAACAGG 21 9614
    BCL11A-7927 + UCUCGGUGGUGGACUAAACAGG 22 9615
    BCL11A-7928 + GUCUCGGUGGUGGACUAAACAGG 23 9616
    BCL11A-7929 + UGUCUCGGUGGUGGACUAAACAGG 24 9617
    BCL11A-7930 + AGGGGGGGCGUCGCCAGG 18 9618
    BCL11A-7931 + GAGGGGGGGCGUCGCCAGG 19 9619
    BCL11A-7932 + GGAGGGGGGGCGUCGCCAGG 20 9620
    BCL11A-7933 + GGGAGGGGGGGCGUCGCCAGG 21 9621
    BCL11A-7934 + AGGGAGGGGGGGCGUCGCCAGG 22 9622
    BCL11A-7935 + GAGGGAGGGGGGGCGUCGCCAGG 23 9623
    BCL11A-7936 + GGAGGGAGGGGGGGCGUCGCCAGG 24 9624
    BCL11A-7937 + AAGCGCCCUUCUGCCAGG 18 9625
    BCL11A-7938 + AAAGCGCCCUUCUGCCAGG 19 9626
    BCL11A-7939 + GAAAGCGCCCUUCUGCCAGG 20 9627
    BCL11A-7940 + GGAAAGCGCCCUUCUGCCAGG 21 9628
    BCL11A-7941 + UGGAAAGCGCCCUUCUGCCAGG 22 9629
    BCL11A-7942 + GUGGAAAGCGCCCUUCUGCCAGG 23 9630
    BCL11A-7943 + GGUGGAAAGCGCCCUUCUGCCAGG 24 9631
    BCL11A-7944 + AUCGCGGCCGGGGGCAGG 18 9632
    BCL11A-7945 + CAUCGCGGCCGGGGGCAGG 19 9633
    BCL11A-7946 + GCAUCGCGGCCGGGGGCAGG 20 9634
    BCL11A-7947 + GGCAUCGCGGCCGGGGGCAGG 21 9635
    BCL11A-7948 + GGGCAUCGCGGCCGGGGGCAGG 22 9636
    BCL11A-7949 + UGGGCAUCGCGGCCGGGGGCAGG 23 9637
    BCL11A-7950 + UUGGGCAUCGCGGCCGGGGGCAGG 24 9638
    BCL11A-7951 + CCGUUCUCCGGGAUCAGG 18 9639
    BCL11A-7952 + CCCGUUCUCCGGGAUCAGG 19 9640
    BCL11A-7953 + CCCCGUUCUCCGGGAUCAGG 20 9641
    BCL11A-7954 + UCCCCGUUCUCCGGGAUCAGG 21 9642
    BCL11A-7955 + GUCCCCGUUCUCCGGGAUCAGG 22 9643
    BCL11A-7956 + CGUCCCCGUUCUCCGGGAUCAGG 23 9644
    BCL11A-7957 + UCGUCCCCGUUCUCCGGGAUCAGG 24 9645
    BCL11A-7958 + GAAGAACCUAGAAAGAGG 18 9646
    BCL11A-7959 + UGAAGAACCUAGAAAGAGG 19 9647
    BCL11A-7960 + GUGAAGAACCUAGAAAGAGG 20 9648
    BCL11A-7961 + UGUGAAGAACCUAGAAAGAGG 21 9649
    BCL11A-7962 + GUGUGAAGAACCUAGAAAGAGG 22 9650
    BCL11A-7963 + UGUGUGAAGAACCUAGAAAGAGG 23 9651
    BCL11A-7964 + GUGUGUGAAGAACCUAGAAAGAGG 24 9652
    BCL11A-7965 + AGAGGUUGGAGACAGAGG 18 9653
    BCL11A-7966 + AAGAGGUUGGAGACAGAGG 19 9654
    BCL11A-6113 + AAAGAGGUUGGAGACAGAGG 20 9655
    BCL11A-7967 + GAAAGAGGUUGGAGACAGAGG 21 9656
    BCL11A-7968 + AGAAAGAGGUUGGAGACAGAGG 22 9657
    BCL11A-7969 + UAGAAAGAGGUUGGAGACAGAGG 23 9658
    BCL11A-7970 + CUAGAAAGAGGUUGGAGACAGAGG 24 9659
    BCL11A-7971 + AGGGGCGGAUUGCAGAGG 18 9660
    BCL11A-7972 + GAGGGGCGGAUUGCAGAGG 19 9661
    BCL11A-6114 + GGAGGGGCGGAUUGCAGAGG 20 9662
    BCL11A-7973 + AGGAGGGGCGGAUUGCAGAGG 21 9663
    BCL11A-7974 + GAGGAGGGGCGGAUUGCAGAGG 22 9664
    BCL11A-7975 + GGAGGAGGGGCGGAUUGCAGAGG 23 9665
    BCL11A-7976 + GGGAGGAGGGGCGGAUUGCAGAGG 24 9666
    BCL11A-7977 + GGCGGAUUGCAGAGGAGG 18 9667
    BCL11A-7978 + GGGCGGAUUGCAGAGGAGG 19 9668
    BCL11A-7979 + GGGGCGGAUUGCAGAGGAGG 20 9669
    BCL11A-7980 + AGGGGCGGAUUGCAGAGGAGG 21 9670
    BCL11A-7981 + GAGGGGCGGAUUGCAGAGGAGG 22 9671
    BCL11A-7982 + GGAGGGGCGGAUUGCAGAGGAGG 23 9672
    BCL11A-7983 + AGGAGGGGCGGAUUGCAGAGGAGG 24 9673
    BCL11A-7984 + GAUUGCAGAGGAGGGAGG 18 9674
    BCL11A-7985 + GGAUUGCAGAGGAGGGAGG 19 9675
    BCL11A-6118 + CGGAUUGCAGAGGAGGGAGG 20 9676
    BCL11A-7986 + GCGGAUUGCAGAGGAGGGAGG 21 9677
    BCL11A-7987 + GGCGGAUUGCAGAGGAGGGAGG 22 9678
    BCL11A-7988 + GGGCGGAUUGCAGAGGAGGGAGG 23 9679
    BCL11A-7989 + GGGGCGGAUUGCAGAGGAGGGAGG 24 9680
    BCL11A-7990 + CGGGGGCUGGGAGGGAGG 18 9681
    BCL11A-7991 + CCGGGGGCUGGGAGGGAGG 19 9682
    BCL11A-6119 + ACCGGGGGCUGGGAGGGAGG 20 9683
    BCL11A-7992 + GACCGGGGGCUGGGAGGGAGG 21 9684
    BCL11A-7993 + UGACCGGGGGCUGGGAGGGAGG 22 9685
    BCL11A-7994 + UUGACCGGGGGCUGGGAGGGAGG 23 9686
    BCL11A-7995 + CUUGACCGGGGGCUGGGAGGGAGG 24 9687
    BCL11A-7996 + UGACCGGGGGCUGGGAGG 18 9688
    BCL11A-7997 + UUGACCGGGGGCUGGGAGG 19 9689
    BCL11A-7998 + CUUGACCGGGGGCUGGGAGG 20 9690
    BCL11A-7999 + ACUUGACCGGGGGCUGGGAGG 21 9691
    BCL11A-8000 + GACUUGACCGGGGGCUGGGAGG 22 9692
    BCL11A-8001 + GGACUUGACCGGGGGCUGGGAGG 23 9693
    BCL11A-8002 + UGGACUUGACCGGGGGCUGGGAGG 24 9694
    BCL11A-8003 + CCGUGUUGGGCAUCGCGG 18 9695
    BCL11A-8004 + UCCGUGUUGGGCAUCGCGG 19 9696
    BCL11A-8005 + CUCCGUGUUGGGCAUCGCGG 20 9697
    BCL11A-8006 + UCUCCGUGUUGGGCAUCGCGG 21 9698
    BCL11A-8007 + UUCUCCGUGUUGGGCAUCGCGG 22 9699
    BCL11A-8008 + GUUCUCCGUGUUGGGCAUCGCGG 23 9700
    BCL11A-8009 + CGUUCUCCGUGUUGGGCAUCGCGG 24 9701
    BCL11A-8010 + GUUCCGGGGAGCUGGCGG 18 9702
    BCL11A-8011 + GGUUCCGGGGAGCUGGCGG 19 9703
    BCL11A-6125 + GGGUUCCGGGGAGCUGGCGG 20 9704
    BCL11A-8012 + CGGGUUCCGGGGAGCUGGCGG 21 9705
    BCL11A-8013 + CCGGGUUCCGGGGAGCUGGCGG 22 9706
    BCL11A-8014 + GCCGGGUUCCGGGGAGCUGGCGG 23 9707
    BCL11A-8015 + UGCCGGGUUCCGGGGAGCUGGCGG 24 9708
    BCL11A-8016 + CCCAGGCGCUCUAUGCGG 18 9709
    BCL11A-8017 + CCCCAGGCGCUCUAUGCGG 19 9710
    BCL11A-6126 + CCCCCAGGCGCUCUAUGCGG 20 9711
    BCL11A-8018 + GCCCCCAGGCGCUCUAUGCGG 21 9712
    BCL11A-8019 + CGCCCCCAGGCGCUCUAUGCGG 22 9713
    BCL11A-8020 + CCGCCCCCAGGCGCUCUAUGCGG 23 9714
    BCL11A-8021 + UCCGCCCCCAGGCGCUCUAUGCGG 24 9715
    BCL11A-8022 + GUGGUGGACUAAACAGGG 18 9716
    BCL11A-8023 + GGUGGUGGACUAAACAGGG 19 9717
    BCL11A-6131 + CGGUGGUGGACUAAACAGGG 20 9718
    BCL11A-8024 + UCGGUGGUGGACUAAACAGGG 21 9719
    BCL11A-8025 + CUCGGUGGUGGACUAAACAGGG 22 9720
    BCL11A-8026 + UCUCGGUGGUGGACUAAACAGGG 23 9721
    BCL11A-8027 + GUCUCGGUGGUGGACUAAACAGGG 24 9722
    BCL11A-8028 + GCGGAUUGCAGAGGAGGG 18 9723
    BCL11A-8029 + GGCGGAUUGCAGAGGAGGG 19 9724
    BCL11A-6133 + GGGCGGAUUGCAGAGGAGGG 20 9725
    BCL11A-8030 + GGGGCGGAUUGCAGAGGAGGG 21 9726
    BCL11A-8031 + AGGGGCGGAUUGCAGAGGAGGG 22 9727
    BCL11A-8032 + GAGGGGCGGAUUGCAGAGGAGGG 23 9728
    BCL11A-8033 + GGAGGGGCGGAUUGCAGAGGAGGG 24 9729
    BCL11A-8034 + GACCGGGGGCUGGGAGGG 18 9730
    BCL11A-8035 + UGACCGGGGGCUGGGAGGG 19 9731
    BCL11A-6135 + UUGACCGGGGGCUGGGAGGG 20 9732
    BCL11A-8036 + CUUGACCGGGGGCUGGGAGGG 21 9733
    BCL11A-8037 + ACUUGACCGGGGGCUGGGAGGG 22 9734
    BCL11A-8038 + GACUUGACCGGGGGCUGGGAGGG 23 9735
    BCL11A-8039 + GGACUUGACCGGGGGCUGGGAGGG 24 9736
    BCL11A-8040 + AGUAACCUUUGCAUAGGG 18 9737
    BCL11A-8041 + CAGUAACCUUUGCAUAGGG 19 9738
    BCL11A-8042 + GCAGUAACCUUUGCAUAGGG 20 9739
    BCL11A-8043 + UGCAGUAACCUUUGCAUAGGG 21 9740
    BCL11A-8044 + UUGCAGUAACCUUUGCAUAGGG 22 9741
    BCL11A-8045 + GUUGCAGUAACCUUUGCAUAGGG 23 9742
    BCL11A-8046 + GGUUGCAGUAACCUUUGCAUAGGG 24 9743
    BCL11A-8047 + GCCCUGCAUGACGUCGGG 18 9744
    BCL11A-8048 + UGCCCUGCAUGACGUCGGG 19 9745
    BCL11A-8049 + AUGCCCUGCAUGACGUCGGG 20 9746
    BCL11A-8050 + CAUGCCCUGCAUGACGUCGGG 21 9747
    BCL11A-8051 + CCAUGCCCUGCAUGACGUCGGG 22 9748
    BCL11A-8052 + ACCAUGCCCUGCAUGACGUCGGG 23 9749
    BCL11A-8053 + CACCAUGCCCUGCAUGACGUCGGG 24 9750
    BCL11A-8054 + CUUGGACUUGACCGGGGG 18 9751
    BCL11A-8055 + ACUUGGACUUGACCGGGGG 19 9752
    BCL11A-8056 + GACUUGGACUUGACCGGGGG 20 9753
    BCL11A-8057 + UGACUUGGACUUGACCGGGGG 21 9754
    BCL11A-8058 + AUGACUUGGACUUGACCGGGGG 22 9755
    BCL11A-8059 + CAUGACUUGGACUUGACCGGGGG 23 9756
    BCL11A-8060 + GCAUGACUUGGACUUGACCGGGGG 24 9757
    BCL11A-8061 + ACUUGACCGGGGGCUGGG 18 9758
    BCL11A-8062 + GACUUGACCGGGGGCUGGG 19 9759
    BCL11A-6146 + GGACUUGACCGGGGGCUGGG 20 9760
    BCL11A-8063 + UGGACUUGACCGGGGGCUGGG 21 9761
    BCL11A-8064 + UUGGACUUGACCGGGGGCUGGG 22 9762
    BCL11A-8065 + CUUGGACUUGACCGGGGGCUGGG 23 9763
    BCL11A-8066 + ACUUGGACUUGACCGGGGGCUGGG 24 9764
    BCL11A-8067 + CAUGGAGAGGUGGCUGGG 18 9765
    BCL11A-8068 + CCAUGGAGAGGUGGCUGGG 19 9766
    BCL11A-8069 + CCCAUGGAGAGGUGGCUGGG 20 9767
    BCL11A-8070 + UCCCAUGGAGAGGUGGCUGGG 21 9768
    BCL11A-8071 + AUCCCAUGGAGAGGUGGCUGGG 22 9769
    BCL11A-8072 + AAUCCCAUGGAGAGGUGGCUGGG 23 9770
    BCL11A-8073 + GAAUCCCAUGGAGAGGUGGCUGGG 24 9771
    BCL11A-8074 + AAACAGGGGGGGAGUGGG 18 9772
    BCL11A-8075 + UAAACAGGGGGGGAGUGGG 19 9773
    BCL11A-6147 + CUAAACAGGGGGGGAGUGGG 20 9774
    BCL11A-8076 + ACUAAACAGGGGGGGAGUGGG 21 9775
    BCL11A-8077 + GACUAAACAGGGGGGGAGUGGG 22 9776
    BCL11A-8078 + GGACUAAACAGGGGGGGAGUGGG 23 9777
    BCL11A-8079 + UGGACUAAACAGGGGGGGAGUGGG 24 9778
    BCL11A-8080 + UCCUAGAGAAAUCCAUGG 18 9779
    BCL11A-8081 + CUCCUAGAGAAAUCCAUGG 19 9780
    BCL11A-6149 + UCUCCUAGAGAAAUCCAUGG 20 9781
    BCL11A-8082 + GUCUCCUAGAGAAAUCCAUGG 21 9782
    BCL11A-8083 + AGUCUCCUAGAGAAAUCCAUGG 22 9783
    BCL11A-8084 + AAGUCUCCUAGAGAAAUCCAUGG 23 9784
    BCL11A-8085 + UAAGUCUCCUAGAGAAAUCCAUGG 24 9785
    BCL11A-8086 + UUCUCGCCCAGGACCUGG 18 9786
    BCL11A-8087 + CUUCUCGCCCAGGACCUGG 19 9787
    BCL11A-6152 + GCUUCUCGCCCAGGACCUGG 20 9788
    BCL11A-8088 + UGCUUCUCGCCCAGGACCUGG 21 9789
    BCL11A-8089 + AUGCUUCUCGCCCAGGACCUGG 22 9790
    BCL11A-8090 + UAUGCUUCUCGCCCAGGACCUGG 23 9791
    BCL11A-8091 + UUAUGCUUCUCGCCCAGGACCUGG 24 9792
    BCL11A-8092 + GGGCGGCUUGCUACCUGG 18 9793
    BCL11A-8093 + AGGGCGGCUUGCUACCUGG 19 9794
    BCL11A-8094 + AAGGGCGGCUUGCUACCUGG 20 9795
    BCL11A-8095 + GAAGGGCGGCUUGCUACCUGG 21 9796
    BCL11A-8096 + GGAAGGGCGGCUUGCUACCUGG 22 9797
    BCL11A-8097 + AGGAAGGGCGGCUUGCUACCUGG 23 9798
    BCL11A-8098 + CAGGAAGGGCGGCUUGCUACCUGG 24 9799
    BCL11A-8099 + GACUUGACCGGGGGCUGG 18 9800
    BCL11A-8100 + GGACUUGACCGGGGGCUGG 19 9801
    BCL11A-8101 + UGGACUUGACCGGGGGCUGG 20 9802
    BCL11A-8102 + UUGGACUUGACCGGGGGCUGG 21 9803
    BCL11A-8103 + CUUGGACUUGACCGGGGGCUGG 22 9804
    BCL11A-8104 + ACUUGGACUUGACCGGGGGCUGG 23 9805
    BCL11A-8105 + GACUUGGACUUGACCGGGGGCUGG 24 9806
    BCL11A-8106 + UAAACAGGGGGGGAGUGG 18 9807
    BCL11A-8107 + CUAAACAGGGGGGGAGUGG 19 9808
    BCL11A-8108 + ACUAAACAGGGGGGGAGUGG 20 9809
    BCL11A-8109 + GACUAAACAGGGGGGGAGUGG 21 9810
    BCL11A-8110 + GGACUAAACAGGGGGGGAGUGG 22 9811
    BCL11A-8111 + UGGACUAAACAGGGGGGGAGUGG 23 9812
    BCL11A-8112 + GUGGACUAAACAGGGGGGGAGUGG 24 9813
    BCL11A-8113 + AAUCCCAUGGAGAGGUGG 18 9814
    BCL11A-8114 + GAAUCCCAUGGAGAGGUGG 19 9815
    BCL11A-8115 + UGAAUCCCAUGGAGAGGUGG 20 9816
    BCL11A-8116 + AUGAAUCCCAUGGAGAGGUGG 21 9817
    BCL11A-8117 + UAUGAAUCCCAUGGAGAGGUGG 22 9818
    BCL11A-8118 + AUAUGAAUCCCAUGGAGAGGUGG 23 9819
    BCL11A-8119 + AAUAUGAAUCCCAUGGAGAGGUGG 24 9820
    BCL11A-8120 + UGCAAUAUGAAUCCCAUG 18 9821
    BCL11A-8121 + CUGCAAUAUGAAUCCCAUG 19 9822
    BCL11A-8122 + UCUGCAAUAUGAAUCCCAUG 20 9823
    BCL11A-8123 + GUCUGCAAUAUGAAUCCCAUG 21 9824
    BCL11A-8124 + UGUCUGCAAUAUGAAUCCCAUG 22 9825
    BCL11A-8125 + UUGUCUGCAAUAUGAAUCCCAUG 23 9826
    BCL11A-8126 + AUUGUCUGCAAUAUGAAUCCCAUG 24 9827
    BCL11A-8127 + CUCCUAGAGAAAUCCAUG 18 9828
    BCL11A-8128 + UCUCCUAGAGAAAUCCAUG 19 9829
    BCL11A-8129 + GUCUCCUAGAGAAAUCCAUG 20 9830
    BCL11A-8130 + AGUCUCCUAGAGAAAUCCAUG 21 9831
    BCL11A-8131 + AAGUCUCCUAGAGAAAUCCAUG 22 9832
    BCL11A-8132 + UAAGUCUCCUAGAGAAAUCCAUG 23 9833
    BCL11A-8133 + CUAAGUCUCCUAGAGAAAUCCAUG 24 9834
    BCL11A-8134 + UCGGACUUGACCGUCAUG 18 9835
    BCL11A-8135 + GUCGGACUUGACCGUCAUG 19 9836
    BCL11A-6164 + CGUCGGACUUGACCGUCAUG 20 9837
    BCL11A-8136 + UCGUCGGACUUGACCGUCAUG 21 9838
    BCL11A-8137 + GUCGUCGGACUUGACCGUCAUG 22 9839
    BCL11A-8138 + CGUCGUCGGACUUGACCGUCAUG 23 9840
    BCL11A-8139 + CCGUCGUCGGACUUGACCGUCAUG 24 9841
    BCL11A-8140 + CUUCUCGCCCAGGACCUG 18 9842
    BCL11A-8141 + GCUUCUCGCCCAGGACCUG 19 9843
    BCL11A-8142 + UGCUUCUCGCCCAGGACCUG 20 9844
    BCL11A-8143 + AUGCUUCUCGCCCAGGACCUG 21 9845
    BCL11A-8144 + UAUGCUUCUCGCCCAGGACCUG 22 9846
    BCL11A-8145 + UUAUGCUUCUCGCCCAGGACCUG 23 9847
    BCL11A-8146 + CUUAUGCUUCUCGCCCAGGACCUG 24 9848
    BCL11A-8147 + AUUCUGCACCUAGUCCUG 18 9849
    BCL11A-8148 + CAUUCUGCACCUAGUCCUG 19 9850
    BCL11A-8149 + ACAUUCUGCACCUAGUCCUG 20 9851
    BCL11A-8150 + GACAUUCUGCACCUAGUCCUG 21 9852
    BCL11A-8151 + GGACAUUCUGCACCUAGUCCUG 22 9853
    BCL11A-8152 + AGGACAUUCUGCACCUAGUCCUG 23 9854
    BCL11A-8153 + AAGGACAUUCUGCACCUAGUCCUG 24 9855
    BCL11A-6537 + GUUGUACAUGUGUAGCUG 18 9856
    BCL11A-6538 + AGUUGUACAUGUGUAGCUG 19 9857
    BCL11A-6539 + AAGUUGUACAUGUGUAGCUG 20 9858
    BCL11A-6540 + CAAGUUGUACAUGUGUAGCUG 21 9859
    BCL11A-6541 + GCAAGUUGUACAUGUGUAGCUG 22 9860
    BCL11A-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 9861
    BCL11A-6543 + UUGCAAGUUGUACAUGUGUAGCUG 24 9862
    BCL11A-8154 + GAGUACACGUUCUCCGUG 18 9863
    BCL11A-8155 + CGAGUACACGUUCUCCGUG 19 9864
    BCL11A-8156 + GCGAGUACACGUUCUCCGUG 20 9865
    BCL11A-8157 + UGCGAGUACACGUUCUCCGUG 21 9866
    BCL11A-8158 + CUGCGAGUACACGUUCUCCGUG 22 9867
    BCL11A-8159 + ACUGCGAGUACACGUUCUCCGUG 23 9868
    BCL11A-8160 + CACUGCGAGUACACGUUCUCCGUG 24 9869
    BCL11A-8161 + CCAGCUCCCCGGGCGGUG 18 9870
    BCL11A-8162 + UCCAGCUCCCCGGGCGGUG 19 9871
    BCL11A-6177 + GUCCAGCUCCCCGGGCGGUG 20 9872
    BCL11A-8163 + CGUCCAGCUCCCCGGGCGGUG 21 9873
    BCL11A-8164 + CCGUCCAGCUCCCCGGGCGGUG 22 9874
    BCL11A-8165 + UCCGUCCAGCUCCCCGGGCGGUG 23 9875
    BCL11A-8166 + CUCCGUCCAGCUCCCCGGGCGGUG 24 9876
    BCL11A-8167 + UCCGGGGAGCUGGCGGUG 18 9877
    BCL11A-8168 + UUCCGGGGAGCUGGCGGUG 19 9878
    BCL11A-8169 + GUUCCGGGGAGCUGGCGGUG 20 9879
    BCL11A-8170 + GGUUCCGGGGAGCUGGCGGUG 21 9880
    BCL11A-8171 + GGGUUCCGGGGAGCUGGCGGUG 22 9881
    BCL11A-8172 + CGGGUUCCGGGGAGCUGGCGGUG 23 9882
    BCL11A-8173 + CCGGGUUCCGGGGAGCUGGCGGUG 24 9883
    BCL11A-8174 + CCAAGUGAUGUCUCGGUG 18 9884
    BCL11A-8175 + UCCAAGUGAUGUCUCGGUG 19 9885
    BCL11A-8176 + GUCCAAGUGAUGUCUCGGUG 20 9886
    BCL11A-8177 + GGUCCAAGUGAUGUCUCGGUG 21 9887
    BCL11A-8178 + GGGUCCAAGUGAUGUCUCGGUG 22 9888
    BCL11A-8179 + GGGGUCCAAGUGAUGUCUCGGUG 23 9889
    BCL11A-8180 + GGGGGUCCAAGUGAUGUCUCGGUG 24 9890
    BCL11A-8181 + AGCUCCCCGGGCGGUGUG 18 9891
    BCL11A-8182 + CAGCUCCCCGGGCGGUGUG 19 9892
    BCL11A-8183 + CCAGCUCCCCGGGCGGUGUG 20 9893
    BCL11A-8184 + UCCAGCUCCCCGGGCGGUGUG 21 9894
    BCL11A-8185 + GUCCAGCUCCCCGGGCGGUGUG 22 9895
    BCL11A-8186 + CGUCCAGCUCCCCGGGCGGUGUG 23 9896
    BCL11A-8187 + CCGUCCAGCUCCCCGGGCGGUGUG 24 9897
    BCL11A-8188 + GCCGAAUGGGGGUGUGUG 18 9898
    BCL11A-8189 + CGCCGAAUGGGGGUGUGUG 19 9899
    BCL11A-8190 + ACGCCGAAUGGGGGUGUGUG 20 9900
    BCL11A-8191 + UACGCCGAAUGGGGGUGUGUG 21 9901
    BCL11A-8192 + CUACGCCGAAUGGGGGUGUGUG 22 9902
    BCL11A-8193 + ACUACGCCGAAUGGGGGUGUGUG 23 9903
    BCL11A-8194 + UACUACGCCGAAUGGGGGUGUGUG 24 9904
    BCL11A-8195 + GGGAGGAGGGGCGGAUUG 18 9905
    BCL11A-8196 + AGGGAGGAGGGGCGGAUUG 19 9906
    BCL11A-8197 + GAGGGAGGAGGGGCGGAUUG 20 9907
    BCL11A-8198 + GGAGGGAGGAGGGGCGGAUUG 21 9908
    BCL11A-8199 + GGGAGGGAGGAGGGGCGGAUUG 22 9909
    BCL11A-8200 + UGGGAGGGAGGAGGGGCGGAUUG 23 9910
    BCL11A-8201 + CUGGGAGGGAGGAGGGGCGGAUUG 24 9911
    BCL11A-8202 + UCGCACAGGUUGCACUUG 18 9912
    BCL11A-8203 + GUCGCACAGGUUGCACUUG 19 9913
    BCL11A-8204 + GGUCGCACAGGUUGCACUUG 20 9914
    BCL11A-8205 + UGGUCGCACAGGUUGCACUUG 21 9915
    BCL11A-8206 + GUGGUCGCACAGGUUGCACUUG 22 9916
    BCL11A-8207 + CGUGGUCGCACAGGUUGCACUUG 23 9917
    BCL11A-8208 + GCGUGGUCGCACAGGUUGCACUUG 24 9918
    BCL11A-8209 + ACCAGGUUGCUCUGAAAU 18 9919
    BCL11A-8210 + CACCAGGUUGCUCUGAAAU 19 9920
    BCL11A-8211 + CCACCAGGUUGCUCUGAAAU 20 9921
    BCL11A-8212 + ACCACCAGGUUGCUCUGAAAU 21 9922
    BCL11A-8213 + CACCACCAGGUUGCUCUGAAAU 22 9923
    BCL11A-8214 + GCACCACCAGGUUGCUCUGAAAU 23 9924
    BCL11A-8215 + UGCACCACCAGGUUGCUCUGAAAU 24 9925
    BCL11A-8216 + CGGGCCCGGACCACUAAU 18 9926
    BCL11A-8217 + CCGGGCCCGGACCACUAAU 19 9927
    BCL11A-8218 + CCCGGGCCCGGACCACUAAU 20 9928
    BCL11A-8219 + GCCCGGGCCCGGACCACUAAU 21 9929
    BCL11A-8220 + UGCCCGGGCCCGGACCACUAAU 22 9930
    BCL11A-8221 + CUGCCCGGGCCCGGACCACUAAU 23 9931
    BCL11A-8222 + CCUGCCCGGGCCCGGACCACUAAU 24 9932
    BCL11A-8223 + GGGCUCUCGAGCUUCCAU 18 9933
    BCL11A-8224 + AGGGCUCUCGAGCUUCCAU 19 9934
    BCL11A-8225 + AAGGGCUCUCGAGCUUCCAU 20 9935
    BCL11A-8226 + UAAGGGCUCUCGAGCUUCCAU 21 9936
    BCL11A-8227 + UUAAGGGCUCUCGAGCUUCCAU 22 9937
    BCL11A-8228 + CUUAAGGGCUCUCGAGCUUCCAU 23 9938
    BCL11A-8229 + ACUUAAGGGCUCUCGAGCUUCCAU 24 9939
    BCL11A-8230 + GUCGGACUUGACCGUCAU 18 9940
    BCL11A-8231 + CGUCGGACUUGACCGUCAU 19 9941
    BCL11A-6186 + UCGUCGGACUUGACCGUCAU 20 9942
    BCL11A-8232 + GUCGUCGGACUUGACCGUCAU 21 9943
    BCL11A-8233 + CGUCGUCGGACUUGACCGUCAU 22 9944
    BCL11A-8234 + CCGUCGUCGGACUUGACCGUCAU 23 9945
    BCL11A-8235 + ACCGUCGUCGGACUUGACCGUCAU 24 9946
    BCL11A-8236 + AUAGGGCUGGGCCGGCCU 18 9947
    BCL11A-8237 + CAUAGGGCUGGGCCGGCCU 19 9948
    BCL11A-6198 + GCAUAGGGCUGGGCCGGCCU 20 9949
    BCL11A-8238 + UGCAUAGGGCUGGGCCGGCCU 21 9950
    BCL11A-8239 + UUGCAUAGGGCUGGGCCGGCCU 22 9951
    BCL11A-8240 + UUUGCAUAGGGCUGGGCCGGCCU 23 9952
    BCL11A-8241 + CUUUGCAUAGGGCUGGGCCGGCCU 24 9953
    BCL11A-8242 + UCUGGAGUCUCCGAAGCU 18 9954
    BCL11A-8243 + GUCUGGAGUCUCCGAAGCU 19 9955
    BCL11A-8244 + UGUCUGGAGUCUCCGAAGCU 20 9956
    BCL11A-8245 + UUGUCUGGAGUCUCCGAAGCU 21 9957
    BCL11A-8246 + AUUGUCUGGAGUCUCCGAAGCU 22 9958
    BCL11A-8247 + GAUUGUCUGGAGUCUCCGAAGCU 23 9959
    BCL11A-8248 + CGAUUGUCUGGAGUCUCCGAAGCU 24 9960
    BCL11A-8249 + UCUCGAGCUUGAUGCGCU 18 9961
    BCL11A-8250 + UUCUCGAGCUUGAUGCGCU 19 9962
    BCL11A-8251 + CUUCUCGAGCUUGAUGCGCU 20 9963
    BCL11A-8252 + CCUUCUCGAGCUUGAUGCGCU 21 9964
    BCL11A-8253 + UCCUUCUCGAGCUUGAUGCGCU 22 9965
    BCL11A-8254 + CUCCUUCUCGAGCUUGAUGCGCU 23 9966
    BCL11A-8255 + ACUCCUUCUCGAGCUUGAUGCGCU 24 9967
    BCL11A-8256 + UGGACUUGACCGGGGGCU 18 9968
    BCL11A-8257 + UUGGACUUGACCGGGGGCU 19 9969
    BCL11A-6207 + CUUGGACUUGACCGGGGGCU 20 9970
    BCL11A-8258 + ACUUGGACUUGACCGGGGGCU 21 9971
    BCL11A-8259 + GACUUGGACUUGACCGGGGGCU 22 9972
    BCL11A-8260 + UGACUUGGACUUGACCGGGGGCU 23 9973
    BCL11A-8261 + AUGACUUGGACUUGACCGGGGGCU 24 9974
    BCL11A-8262 + UCCCAUGGAGAGGUGGCU 18 9975
    BCL11A-8263 + AUCCCAUGGAGAGGUGGCU 19 9976
    BCL11A-6208 + AAUCCCAUGGAGAGGUGGCU 20 9977
    BCL11A-8264 + GAAUCCCAUGGAGAGGUGGCU 21 9978
    BCL11A-8265 + UGAAUCCCAUGGAGAGGUGGCU 22 9979
    BCL11A-8266 + AUGAAUCCCAUGGAGAGGUGGCU 23 9980
    BCL11A-8267 + UAUGAAUCCCAUGGAGAGGUGGCU 24 9981
    BCL11A-8268 + GUGCACCACCAGGUUGCU 18 9982
    BCL11A-8269 + GGUGCACCACCAGGUUGCU 19 9983
    BCL11A-8270 + CGGUGCACCACCAGGUUGCU 20 9984
    BCL11A-8271 + CCGGUGCACCACCAGGUUGCU 21 9985
    BCL11A-8272 + GCCGGUGCACCACCAGGUUGCU 22 9986
    BCL11A-8273 + CGCCGGUGCACCACCAGGUUGCU 23 9987
    BCL11A-8274 + GCGCCGGUGCACCACCAGGUUGCU 24 9988
    BCL11A-8275 + AAGCUAAGGAAGGGAUCU 18 9989
    BCL11A-8276 + GAAGCUAAGGAAGGGAUCU 19 9990
    BCL11A-8277 + CGAAGCUAAGGAAGGGAUCU 20 9991
    BCL11A-8278 + CCGAAGCUAAGGAAGGGAUCU 21 9992
    BCL11A-8279 + UCCGAAGCUAAGGAAGGGAUCU 22 9993
    BCL11A-8280 + CUCCGAAGCUAAGGAAGGGAUCU 23 9994
    BCL11A-8281 + UCUCCGAAGCUAAGGAAGGGAUCU 24 9995
    BCL11A-8282 + GGCGAUUGUCUGGAGUCU 18 9996
    BCL11A-8283 + AGGCGAUUGUCUGGAGUCU 19 9997
    BCL11A-8284 + AAGGCGAUUGUCUGGAGUCU 20 9998
    BCL11A-8285 + AAAGGCGAUUGUCUGGAGUCU 21 9999
    BCL11A-8286 + AAAAGGCGAUUGUCUGGAGUCU 22 10000
    BCL11A-8287 + CAAAAGGCGAUUGUCUGGAGUCU 23 10001
    BCL11A-8288 + GCAAAAGGCGAUUGUCUGGAGUCU 24 10002
    BCL11A-8289 + CCUCCUCGUCCCCGUUCU 18 10003
    BCL11A-8290 + UCCUCCUCGUCCCCGUUCU 19 10004
    BCL11A-8291 + UUCCUCCUCGUCCCCGUUCU 20 10005
    BCL11A-8292 + CUUCCUCCUCGUCCCCGUUCU 21 10006
    BCL11A-8293 + UCUUCCUCCUCGUCCCCGUUCU 22 10007
    BCL11A-8294 + CUCUUCCUCCUCGUCCCCGUUCU 23 10008
    BCL11A-8295 + CCUCUUCCUCCUCGUCCCCGUUCU 24 10009
    BCL11A-8296 + AGCGCAAACUCCCGUUCU 18 10010
    BCL11A-8297 + AAGCGCAAACUCCCGUUCU 19 10011
    BCL11A-8298 + GAAGCGCAAACUCCCGUUCU 20 10012
    BCL11A-8299 + AGAAGCGCAAACUCCCGUUCU 21 10013
    BCL11A-8300 + GAGAAGCGCAAACUCCCGUUCU 22 10014
    BCL11A-8301 + GGAGAAGCGCAAACUCCCGUUCU 23 10015
    BCL11A-8302 + UGGAGAAGCGCAAACUCCCGUUCU 24 10016
    BCL11A-8303 + GGGGGCUUCAAAUUUUCU 18 10017
    BCL11A-8304 + UGGGGGCUUCAAAUUUUCU 19 10018
    BCL11A-8305 + CUGGGGGCUUCAAAUUUUCU 20 10019
    BCL11A-8306 + CCUGGGGGCUUCAAAUUUUCU 21 10020
    BCL11A-8307 + CCCUGGGGGCUUCAAAUUUUCU 22 10021
    BCL11A-8308 + CCCCUGGGGGCUUCAAAUUUUCU 23 10022
    BCL11A-8309 + ACCCCUGGGGGCUUCAAAUUUUCU 24 10023
    BCL11A-8310 + AAGAACCUAGAAAGAGGU 18 10024
    BCL11A-8311 + GAAGAACCUAGAAAGAGGU 19 10025
    BCL11A-6224 + UGAAGAACCUAGAAAGAGGU 20 10026
    BCL11A-8312 + GUGAAGAACCUAGAAAGAGGU 21 10027
    BCL11A-8313 + UGUGAAGAACCUAGAAAGAGGU 22 10028
    BCL11A-8314 + GUGUGAAGAACCUAGAAAGAGGU 23 10029
    BCL11A-8315 + UGUGUGAAGAACCUAGAAAGAGGU 24 10030
    BCL11A-8316 + UCCAGCUCCCCGGGCGGU 18 10031
    BCL11A-8317 + GUCCAGCUCCCCGGGCGGU 19 10032
    BCL11A-8318 + CGUCCAGCUCCCCGGGCGGU 20 10033
    BCL11A-8319 + CCGUCCAGCUCCCCGGGCGGU 21 10034
    BCL11A-8320 + UCCGUCCAGCUCCCCGGGCGGU 22 10035
    BCL11A-8321 + CUCCGUCCAGCUCCCCGGGCGGU 23 10036
    BCL11A-8322 + CCUCCGUCCAGCUCCCCGGGCGGU 24 10037
    BCL11A-8323 + GAUACCAACCCGCGGGGU 18 10038
    BCL11A-8324 + GGAUACCAACCCGCGGGGU 19 10039
    BCL11A-8325 + GGGAUACCAACCCGCGGGGU 20 10040
    BCL11A-8326 + AGGGAUACCAACCCGCGGGGU 21 10041
    BCL11A-8327 + AAGGGAUACCAACCCGCGGGGU 22 10042
    BCL11A-8328 + GAAGGGAUACCAACCCGCGGGGU 23 10043
    BCL11A-8329 + UGAAGGGAUACCAACCCGCGGGGU 24 10044
    BCL11A-8330 + UACGCCGAAUGGGGGUGU 18 10045
    BCL11A-8331 + CUACGCCGAAUGGGGGUGU 19 10046
    BCL11A-8332 + ACUACGCCGAAUGGGGGUGU 20 10047
    BCL11A-8333 + UACUACGCCGAAUGGGGGUGU 21 10048
    BCL11A-8334 + GUACUACGCCGAAUGGGGGUGU 22 10049
    BCL11A-8335 + GGUACUACGCCGAAUGGGGGUGU 23 10050
    BCL11A-8336 + GGGUACUACGCCGAAUGGGGGUGU 24 10051
    BCL11A-8337 + GAGGCAAAAGGCGAUUGU 18 10052
    BCL11A-8338 + GGAGGCAAAAGGCGAUUGU 19 10053
    BCL11A-8339 + AGGAGGCAAAAGGCGAUUGU 20 10054
    BCL11A-8340 + GAGGAGGCAAAAGGCGAUUGU 21 10055
    BCL11A-8341 + CGAGGAGGCAAAAGGCGAUUGU 22 10056
    BCL11A-8342 + ACGAGGAGGCAAAAGGCGAUUGU 23 10057
    BCL11A-8343 + GACGAGGAGGCAAAAGGCGAUUGU 24 10058
    BCL11A-8344 + CAAAUUUUCUCAGAACUU 18 10059
    BCL11A-8345 + UCAAAUUUUCUCAGAACUU 19 10060
    BCL11A-8346 + UUCAAAUUUUCUCAGAACUU 20 10061
    BCL11A-8347 + CUUCAAAUUUUCUCAGAACUU 21 10062
    BCL11A-8348 + GCUUCAAAUUUUCUCAGAACUU 22 10063
    BCL11A-8349 + GGCUUCAAAUUUUCUCAGAACUU 23 10064
    BCL11A-8350 + GGGCUUCAAAUUUUCUCAGAACUU 24 10065
    BCL11A-8351 + CGCUGCGUCUGCCCUCUU 18 10066
    BCL11A-8352 + UCGCUGCGUCUGCCCUCUU 19 10067
    BCL11A-8353 + GUCGCUGCGUCUGCCCUCUU 20 10068
    BCL11A-8354 + UGUCGCUGCGUCUGCCCUCUU 21 10069
    BCL11A-8355 + GUGUCGCUGCGUCUGCCCUCUU 22 10070
    BCL11A-8356 + AGUGUCGCUGCGUCUGCCCUCUU 23 10071
    BCL11A-8357 + AAGUGUCGCUGCGUCUGCCCUCUU 24 10072
    BCL11A-8358 + AGUCGCUGGUGCCGGGUU 18 10073
    BCL11A-8359 + AAGUCGCUGGUGCCGGGUU 19 10074
    BCL11A-8360 + CAAGUCGCUGGUGCCGGGUU 20 10075
    BCL11A-8361 + CCAAGUCGCUGGUGCCGGGUU 21 10076
    BCL11A-8362 + ACCAAGUCGCUGGUGCCGGGUU 22 10077
    BCL11A-8363 + CACCAAGUCGCUGGUGCCGGGUU 23 10078
    BCL11A-8364 + CCACCAAGUCGCUGGUGCCGGGUU 24 10079
    BCL11A-8365 + CUGCCCAGCAGCAGCUUU 18 10080
    BCL11A-8366 + GCUGCCCAGCAGCAGCUUU 19 10081
    BCL11A-8367 + GGCUGCCCAGCAGCAGCUUU 20 10082
    BCL11A-8368 + GGGCUGCCCAGCAGCAGCUUU 21 10083
    BCL11A-8369 + GGGGCUGCCCAGCAGCAGCUUU 22 10084
    BCL11A-8370 + UGGGGCUGCCCAGCAGCAGCUUU 23 10085
    BCL11A-8371 + CUGGGGCUGCCCAGCAGCAGCUUU 24 10086
    BCL11A-8372 - GGCAGGCCCAGCUCAAAA 18 10087
    BCL11A-8373 - GGGCAGGCCCAGCUCAAAA 19 10088
    BCL11A-8374 - CGGGCAGGCCCAGCUCAAAA 20 10089
    BCL11A-8375 - CCGGGCAGGCCCAGCUCAAAA 21 10090
    BCL11A-8376 - CCCGGGCAGGCCCAGCUCAAAA 22 10091
    BCL11A-8377 - GCCCGGGCAGGCCCAGCUCAAAA 23 10092
    BCL11A-8378 - GGCCCGGGCAGGCCCAGCUCAAAA 24 10093
    BCL11A-8379 - UAAGAAUCUACUUAGAAA 18 10094
    BCL11A-8380 - UUAAGAAUCUACUUAGAAA 19 10095
    BCL11A-8381 - AUUAAGAAUCUACUUAGAAA 20 10096
    BCL11A-8382 - GAUUAAGAAUCUACUUAGAAA 21 10097
    BCL11A-8383 - GGAUUAAGAAUCUACUUAGAAA 22 10098
    BCL11A-8384 - UGGAUUAAGAAUCUACUUAGAAA 23 10099
    BCL11A-8385 - AUGGAUUAAGAAUCUACUUAGAAA 24 10100
    BCL11A-8386 - CGGGCAGGCCCAGCUCAA 18 10101
    BCL11A-8387 - CCGGGCAGGCCCAGCUCAA 19 10102
    BCL11A-8388 - CCCGGGCAGGCCCAGCUCAA 20 10103
    BCL11A-8389 - GCCCGGGCAGGCCCAGCUCAA 21 10104
    BCL11A-8390 - GGCCCGGGCAGGCCCAGCUCAA 22 10105
    BCL11A-8391 - GGGCCCGGGCAGGCCCAGCUCAA 23 10106
    BCL11A-8392 - CGGGCCCGGGCAGGCCCAGCUCAA 24 10107
    BCL11A-8393 - GACGAGGAAGAGGAAGAA 18 10108
    BCL11A-8394 - CGACGAGGAAGAGGAAGAA 19 10109
    BCL11A-3947 - ACGACGAGGAAGAGGAAGAA 20 10110
    BCL11A-8395 - GACGACGAGGAAGAGGAAGAA 21 10111
    BCL11A-8396 - GGACGACGAGGAAGAGGAAGAA 22 10112
    BCL11A-8397 - AGGACGACGAGGAAGAGGAAGAA 23 10113
    BCL11A-8398 - GAGGACGACGAGGAAGAGGAAGAA 24 10114
    BCL11A-8399 - CAACCUGAUCCCGGAGAA 18 10115
    BCL11A-8400 - CCAACCUGAUCCCGGAGAA 19 10116
    BCL11A-5881 - CCCAACCUGAUCCCGGAGAA 20 10117
    BCL11A-8401 - CCCCAACCUGAUCCCGGAGAA 21 10118
    BCL11A-8402 - ACCCCAACCUGAUCCCGGAGAA 22 10119
    BCL11A-8403 - GACCCCAACCUGAUCCCGGAGAA 23 10120
    BCL11A-8404 - CGACCCCAACCUGAUCCCGGAGAA 24 10121
    BCL11A-8405 - GGAGCACUCCUCGGAGAA 18 10122
    BCL11A-8406 - CGGAGCACUCCUCGGAGAA 19 10123
    BCL11A-5882 - UCGGAGCACUCCUCGGAGAA 20 10124
    BCL11A-8407 - GUCGGAGCACUCCUCGGAGAA 21 10125
    BCL11A-8408 - CGUCGGAGCACUCCUCGGAGAA 22 10126
    BCL11A-8409 - UCGUCGGAGCACUCCUCGGAGAA 23 10127
    BCL11A-8410 - CUCGUCGGAGCACUCCUCGGAGAA 24 10128
    BCL11A-8411 - GAGGAGGACGACGAGGAA 18 10129
    BCL11A-8412 - AGAGGAGGACGACGAGGAA 19 10130
    BCL11A-3950 - AAGAGGAGGACGACGAGGAA 20 10131
    BCL11A-8413 - GAAGAGGAGGACGACGAGGAA 21 10132
    BCL11A-8414 - GGAAGAGGAGGACGACGAGGAA 22 10133
    BCL11A-8415 - AGGAAGAGGAGGACGACGAGGAA 23 10134
    BCL11A-8416 - GAGGAAGAGGAGGACGACGAGGAA 24 10135
    BCL11A-8417 - GAGGAAGAAGAGGAGGAA 18 10136
    BCL11A-8418 - AGAGGAAGAAGAGGAGGAA 19 10137
    BCL11A-3962 - AAGAGGAAGAAGAGGAGGAA 20 10138
    BCL11A-8419 - GAAGAGGAAGAAGAGGAGGAA 21 10139
    BCL11A-8420 - GGAAGAGGAAGAAGAGGAGGAA 22 10140
    BCL11A-8421 - AGGAAGAGGAAGAAGAGGAGGAA 23 10141
    BCL11A-8422 - GAGGAAGAGGAAGAAGAGGAGGAA 24 10142
    BCL11A-8423 - AACGGGGACGAGGAGGAA 18 10143
    BCL11A-8424 - GAACGGGGACGAGGAGGAA 19 10144
    BCL11A-3934 - AGAACGGGGACGAGGAGGAA 20 10145
    BCL11A-8425 - GAGAACGGGGACGAGGAGGAA 21 10146
    BCL11A-8426 - GGAGAACGGGGACGAGGAGGAA 22 10147
    BCL11A-8427 - CGGAGAACGGGGACGAGGAGGAA 23 10148
    BCL11A-8428 - CCGGAGAACGGGGACGAGGAGGAA 24 10149
    BCL11A-8429 - GGCGCAGCGGCACGGGAA 18 10150
    BCL11A-8430 - GGGCGCAGCGGCACGGGAA 19 10151
    BCL11A-3857 - GGGGCGCAGCGGCACGGGAA 20 10152
    BCL11A-8431 - CGGGGCGCAGCGGCACGGGAA 21 10153
    BCL11A-8432 - UCGGGGCGCAGCGGCACGGGAA 22 10154
    BCL11A-8433 - CUCGGGGCGCAGCGGCACGGGAA 23 10155
    BCL11A-8434 - UCUCGGGGCGCAGCGGCACGGGAA 24 10156
    BCL11A-8435 - CGGCCGCGAUGCCCAACA 18 10157
    BCL11A-8436 - CCGGCCGCGAUGCCCAACA 19 10158
    BCL11A-5893 - CCCGGCCGCGAUGCCCAACA 20 10159
    BCL11A-8437 - CCCCGGCCGCGAUGCCCAACA 21 10160
    BCL11A-8438 - CCCCCGGCCGCGAUGCCCAACA 22 10161
    BCL11A-8439 - GCCCCCGGCCGCGAUGCCCAACA 23 10162
    BCL11A-8440 - UGCCCCCGGCCGCGAUGCCCAACA 24 10163
    BCL11A-8441 - CUACUUAGAAAGCGAACA 18 10164
    BCL11A-8442 - UCUACUUAGAAAGCGAACA 19 10165
    BCL11A-5894 - AUCUACUUAGAAAGCGAACA 20 10166
    BCL11A-8443 - AAUCUACUUAGAAAGCGAACA 21 10167
    BCL11A-8444 - GAAUCUACUUAGAAAGCGAACA 22 10168
    BCL11A-8445 - AGAAUCUACUUAGAAAGCGAACA 23 10169
    BCL11A-8446 - AAGAAUCUACUUAGAAAGCGAACA 24 10170
    BCL11A-8447 - CCCCUGUUUAGUCCACCA 18 10171
    BCL11A-8448 - CCCCCUGUUUAGUCCACCA 19 10172
    BCL11A-8449 - CCCCCCUGUUUAGUCCACCA 20 10173
    BCL11A-8450 - CCCCCCCUGUUUAGUCCACCA 21 10174
    BCL11A-8451 - UCCCCCCCUGUUUAGUCCACCA 22 10175
    BCL11A-8452 - CUCCCCCCCUGUUUAGUCCACCA 23 10176
    BCL11A-8453 - ACUCCCCCCCUGUUUAGUCCACCA 24 10177
    BCL11A-8454 - CAUUCGGCGUAGUACCCA 18 10178
    BCL11A-8455 - CCAUUCGGCGUAGUACCCA 19 10179
    BCL11A-8456 - CCCAUUCGGCGUAGUACCCA 20 10180
    BCL11A-8457 - CCCCAUUCGGCGUAGUACCCA 21 10181
    BCL11A-8458 - CCCCCAUUCGGCGUAGUACCCA 22 10182
    BCL11A-8459 - ACCCCCAUUCGGCGUAGUACCCA 23 10183
    BCL11A-8460 - CACCCCCAUUCGGCGUAGUACCCA 24 10184
    BCL11A-8461 - GGCCGAGGCCGAGGGCCA 18 10185
    BCL11A-8462 - UGGCCGAGGCCGAGGGCCA 19 10186
    BCL11A-8463 - CUGGCCGAGGCCGAGGGCCA 20 10187
    BCL11A-8464 - CCUGGCCGAGGCCGAGGGCCA 21 10188
    BCL11A-8465 - ACCUGGCCGAGGCCGAGGGCCA 22 10189
    BCL11A-8466 - CACCUGGCCGAGGCCGAGGGCCA 23 10190
    BCL11A-8467 - CCACCUGGCCGAGGCCGAGGGCCA 24 10191
    BCL11A-8468 - UUUCUCUUGCAACACGCA 18 10192
    BCL11A-8469 - GUUUCUCUUGCAACACGCA 19 10193
    BCL11A-8470 - GGUUUCUCUUGCAACACGCA 20 10194
    BCL11A-8471 - UGGUUUCUCUUGCAACACGCA 21 10195
    BCL11A-8472 - AUGGUUUCUCUUGCAACACGCA 22 10196
    BCL11A-8473 - CAUGGUUUCUCUUGCAACACGCA 23 10197
    BCL11A-8474 - GCAUGGUUUCUCUUGCAACACGCA 24 10198
    BCL11A-8475 - ACUUGGACCCCCACCGCA 18 10199
    BCL11A-8476 - CACUUGGACCCCCACCGCA 19 10200
    BCL11A-8477 - UCACUUGGACCCCCACCGCA 20 10201
    BCL11A-8478 - AUCACUUGGACCCCCACCGCA 21 10202
    BCL11A-8479 - CAUCACUUGGACCCCCACCGCA 22 10203
    BCL11A-8480 - ACAUCACUUGGACCCCCACCGCA 23 10204
    BCL11A-8481 - GACAUCACUUGGACCCCCACCGCA 24 10205
    BCL11A-8482 - UCUCGGGGCGCAGCGGCA 18 10206
    BCL11A-8483 - AUCUCGGGGCGCAGCGGCA 19 10207
    BCL11A-5904 - GAUCUCGGGGCGCAGCGGCA 20 10208
    BCL11A-8484 - GGAUCUCGGGGCGCAGCGGCA 21 10209
    BCL11A-8485 - GGGAUCUCGGGGCGCAGCGGCA 22 10210
    BCL11A-8486 - AGGGAUCUCGGGGCGCAGCGGCA 23 10211
    BCL11A-8487 - GAGGGAUCUCGGGGCGCAGCGGCA 24 10212
    BCL11A-8488 - AGACUUAGAGAGCUGGCA 18 10213
    BCL11A-8489 - GAGACUUAGAGAGCUGGCA 19 10214
    BCL11A-5907 - GGAGACUUAGAGAGCUGGCA 20 10215
    BCL11A-8490 - AGGAGACUUAGAGAGCUGGCA 21 10216
    BCL11A-8491 - UAGGAGACUUAGAGAGCUGGCA 22 10217
    BCL11A-8492 - CUAGGAGACUUAGAGAGCUGGCA 23 10218
    BCL11A-8493 - UCUAGGAGACUUAGAGAGCUGGCA 24 10219
    BCL11A-8494 - GCUCCAUGCAGCACUUCA 18 10220
    BCL11A-8495 - AGCUCCAUGCAGCACUUCA 19 10221
    BCL11A-8496 - CAGCUCCAUGCAGCACUUCA 20 10222
    BCL11A-8497 - UCAGCUCCAUGCAGCACUUCA 21 10223
    BCL11A-8498 - CUCAGCUCCAUGCAGCACUUCA 22 10224
    BCL11A-8499 - GCUCAGCUCCAUGCAGCACUUCA 23 10225
    BCL11A-8500 - UGCUCAGCUCCAUGCAGCACUUCA 24 10226
    BCL11A-8501 - UGGUGGCCAAGUUCAAGA 18 10227
    BCL11A-8502 - GUGGUGGCCAAGUUCAAGA 19 10228
    BCL11A-8503 - CGUGGUGGCCAAGUUCAAGA 20 10229
    BCL11A-8504 - CCGUGGUGGCCAAGUUCAAGA 21 10230
    BCL11A-8505 - UCCGUGGUGGCCAAGUUCAAGA 22 10231
    BCL11A-8506 - GUCCGUGGUGGCCAAGUUCAAGA 23 10232
    BCL11A-8507 - AGUCCGUGGUGGCCAAGUUCAAGA 24 10233
    BCL11A-8508 - AGGAGGAGCUGACGGAGA 18 10234
    BCL11A-8509 - GAGGAGGAGCUGACGGAGA 19 10235
    BCL11A-8510 - GGAGGAGGAGCUGACGGAGA 20 10236
    BCL11A-8511 - AGGAGGAGGAGCUGACGGAGA 21 10237
    BCL11A-8512 - GAGGAGGAGGAGCUGACGGAGA 22 10238
    BCL11A-8513 - GGAGGAGGAGGAGCUGACGGAGA 23 10239
    BCL11A-8514 - AGGAGGAGGAGGAGCUGACGGAGA 24 10240
    BCL11A-8515 - CCAACCUGAUCCCGGAGA 18 10241
    BCL11A-8516 - CCCAACCUGAUCCCGGAGA 19 10242
    BCL11A-8517 - CCCCAACCUGAUCCCGGAGA 20 10243
    BCL11A-8518 - ACCCCAACCUGAUCCCGGAGA 21 10244
    BCL11A-8519 - GACCCCAACCUGAUCCCGGAGA 22 10245
    BCL11A-8520 - CGACCCCAACCUGAUCCCGGAGA 23 10246
    BCL11A-8521 - ACGACCCCAACCUGAUCCCGGAGA 24 10247
    BCL11A-8522 - CGGAGCACUCCUCGGAGA 18 10248
    BCL11A-8523 - UCGGAGCACUCCUCGGAGA 19 10249
    BCL11A-8524 - GUCGGAGCACUCCUCGGAGA 20 10250
    BCL11A-8525 - CGUCGGAGCACUCCUCGGAGA 21 10251
    BCL11A-8526 - UCGUCGGAGCACUCCUCGGAGA 22 10252
    BCL11A-8527 - CUCGUCGGAGCACUCCUCGGAGA 23 10253
    BCL11A-8528 - CCUCGUCGGAGCACUCCUCGGAGA 24 10254
    BCL11A-8529 - UACCAGGAUCAGUAUCGA 18 10255
    BCL11A-8530 - AUACCAGGAUCAGUAUCGA 19 10256
    BCL11A-8531 - AAUACCAGGAUCAGUAUCGA 20 10257
    BCL11A-8532 - GAAUACCAGGAUCAGUAUCGA 21 10258
    BCL11A-8533 - AGAAUACCAGGAUCAGUAUCGA 22 10259
    BCL11A-8534 - AAGAAUACCAGGAUCAGUAUCGA 23 10260
    BCL11A-8535 - UAAGAAUACCAGGAUCAGUAUCGA 24 10261
    BCL11A-8536 - UGUGUGGCAGUUUUCGGA 18 10262
    BCL11A-8537 - AUGUGUGGCAGUUUUCGGA 19 10263
    BCL11A-5929 - GAUGUGUGGCAGUUUUCGGA 20 10264
    BCL11A-8538 - AGAUGUGUGGCAGUUUUCGGA 21 10265
    BCL11A-8539 - AAGAUGUGUGGCAGUUUUCGGA 22 10266
    BCL11A-8540 - CAAGAUGUGUGGCAGUUUUCGGA 23 10267
    BCL11A-8541 - UCAAGAUGUGUGGCAGUUUUCGGA 24 10268
    BCL11A-8542 - ACCGCCCGGGGAGCUGGA 18 10269
    BCL11A-8543 - CACCGCCCGGGGAGCUGGA 19 10270
    BCL11A-5933 - ACACCGCCCGGGGAGCUGGA 20 10271
    BCL11A-8544 - CACACCGCCCGGGGAGCUGGA 21 10272
    BCL11A-8545 - CCACACCGCCCGGGGAGCUGGA 22 10273
    BCL11A-8546 - UCCACACCGCCCGGGGAGCUGGA 23 10274
    BCL11A-8547 - CUCCACACCGCCCGGGGAGCUGGA 24 10275
    BCL11A-8548 - AGCGGCACGGGAAGUGGA 18 10276
    BCL11A-8549 - CAGCGGCACGGGAAGUGGA 19 10277
    BCL11A-5934 - GCAGCGGCACGGGAAGUGGA 20 10278
    BCL11A-8550 - CGCAGCGGCACGGGAAGUGGA 21 10279
    BCL11A-8551 - GCGCAGCGGCACGGGAAGUGGA 22 10280
    BCL11A-8552 - GGCGCAGCGGCACGGGAAGUGGA 23 10281
    BCL11A-8553 - GGGCGCAGCGGCACGGGAAGUGGA 24 10282
    BCL11A-8554 - AGGAGGAGGAGGAGCUGA 18 10283
    BCL11A-8555 - GAGGAGGAGGAGGAGCUGA 19 10284
    BCL11A-5938 - AGAGGAGGAGGAGGAGCUGA 20 10285
    BCL11A-8556 - AAGAGGAGGAGGAGGAGCUGA 21 10286
    BCL11A-8557 - GAAGAGGAGGAGGAGGAGCUGA 22 10287
    BCL11A-8558 - GGAAGAGGAGGAGGAGGAGCUGA 23 10288
    BCL11A-8559 - AGGAAGAGGAGGAGGAGGAGCUGA 24 10289
    BCL11A-8560 - GGUUGAAUCCAAUGGCUA 18 10290
    BCL11A-8561 - CGGUUGAAUCCAAUGGCUA 19 10291
    BCL11A-5944 - GCGGUUGAAUCCAAUGGCUA 20 10292
    BCL11A-8562 - UGCGGUUGAAUCCAAUGGCUA 21 10293
    BCL11A-8563 - CUGCGGUUGAAUCCAAUGGCUA 22 10294
    BCL11A-8564 - GCUGCGGUUGAAUCCAAUGGCUA 23 10295
    BCL11A-8565 - UGCUGCGGUUGAAUCCAAUGGCUA 24 10296
    BCL11A-8566 - AGAAUACCAGGAUCAGUA 18 10297
    BCL11A-8567 - AAGAAUACCAGGAUCAGUA 19 10298
    BCL11A-8568 - UAAGAAUACCAGGAUCAGUA 20 10299
    BCL11A-8569 - CUAAGAAUACCAGGAUCAGUA 21 10300
    BCL11A-8570 - GCUAAGAAUACCAGGAUCAGUA 22 10301
    BCL11A-8571 - UGCUAAGAAUACCAGGAUCAGUA 23 10302
    BCL11A-8572 - CUGCUAAGAAUACCAGGAUCAGUA 24 10303
    BCL11A-8573 - AUUUCUCUAGGAGACUUA 18 10304
    BCL11A-8574 - GAUUUCUCUAGGAGACUUA 19 10305
    BCL11A-8575 - GGAUUUCUCUAGGAGACUUA 20 10306
    BCL11A-8576 - UGGAUUUCUCUAGGAGACUUA 21 10307
    BCL11A-8577 - AUGGAUUUCUCUAGGAGACUUA 22 10308
    BCL11A-8578 - CAUGGAUUUCUCUAGGAGACUUA 23 10309
    BCL11A-8579 - CCAUGGAUUUCUCUAGGAGACUUA 24 10310
    BCL11A-8580 - CCGGCCGCGAUGCCCAAC 18 10311
    BCL11A-8581 - CCCGGCCGCGAUGCCCAAC 19 10312
    BCL11A-8582 - CCCCGGCCGCGAUGCCCAAC 20 10313
    BCL11A-8583 - CCCCCGGCCGCGAUGCCCAAC 21 10314
    BCL11A-8584 - GCCCCCGGCCGCGAUGCCCAAC 22 10315
    BCL11A-8585 - UGCCCCCGGCCGCGAUGCCCAAC 23 10316
    BCL11A-8586 - CUGCCCCCGGCCGCGAUGCCCAAC 24 10317
    BCL11A-8587 - AACCUGAUCCCGGAGAAC 18 10318
    BCL11A-8588 - CAACCUGAUCCCGGAGAAC 19 10319
    BCL11A-5948 - CCAACCUGAUCCCGGAGAAC 20 10320
    BCL11A-8589 - CCCAACCUGAUCCCGGAGAAC 21 10321
    BCL11A-8590 - CCCCAACCUGAUCCCGGAGAAC 22 10322
    BCL11A-8591 - ACCCCAACCUGAUCCCGGAGAAC 23 10323
    BCL11A-8592 - GACCCCAACCUGAUCCCGGAGAAC 24 10324
    BCL11A-8593 - UCUACUUAGAAAGCGAAC 18 10325
    BCL11A-8594 - AUCUACUUAGAAAGCGAAC 19 10326
    BCL11A-8595 - AAUCUACUUAGAAAGCGAAC 20 10327
    BCL11A-8596 - GAAUCUACUUAGAAAGCGAAC 21 10328
    BCL11A-8597 - AGAAUCUACUUAGAAAGCGAAC 22 10329
    BCL11A-8598 - AAGAAUCUACUUAGAAAGCGAAC 23 10330
    BCL11A-8599 - UAAGAAUCUACUUAGAAAGCGAAC 24 10331
    BCL11A-8600 - GAGGCGGCGCGCCACCAC 18 10332
    BCL11A-8601 - GGAGGCGGCGCGCCACCAC 19 10333
    BCL11A-8602 - UGGAGGCGGCGCGCCACCAC 20 10334
    BCL11A-8603 - CUGGAGGCGGCGCGCCACCAC 21 10335
    BCL11A-8604 - CCUGGAGGCGGCGCGCCACCAC 22 10336
    BCL11A-8605 - GCCUGGAGGCGGCGCGCCACCAC 23 10337
    BCL11A-8606 - AGCCUGGAGGCGGCGCGCCACCAC 24 10338
    BCL11A-8607 - GUGCACCGGCGCAGCCAC 18 10339
    BCL11A-8608 - GGUGCACCGGCGCAGCCAC 19 10340
    BCL11A-8609 - UGGUGCACCGGCGCAGCCAC 20 10341
    BCL11A-8610 - GUGGUGCACCGGCGCAGCCAC 21 10342
    BCL11A-8611 - GGUGGUGCACCGGCGCAGCCAC 22 10343
    BCL11A-8612 - UGGUGGUGCACCGGCGCAGCCAC 23 10344
    BCL11A-8613 - CUGGUGGUGCACCGGCGCAGCCAC 24 10345
    BCL11A-8614 - AGCAAGCUGAAGCGCCAC 18 10346
    BCL11A-8615 - CAGCAAGCUGAAGCGCCAC 19 10347
    BCL11A-8616 - CCAGCAAGCUGAAGCGCCAC 20 10348
    BCL11A-8617 - GCCAGCAAGCUGAAGCGCCAC 21 10349
    BCL11A-8618 - GGCCAGCAAGCUGAAGCGCCAC 22 10350
    BCL11A-8619 - AGGCCAGCAAGCUGAAGCGCCAC 23 10351
    BCL11A-8620 - CAGGCCAGCAAGCUGAAGCGCCAC 24 10352
    BCL11A-8621 - GCCGAGGCCGAGGGCCAC 18 10353
    BCL11A-8622 - GGCCGAGGCCGAGGGCCAC 19 10354
    BCL11A-5951 - UGGCCGAGGCCGAGGGCCAC 20 10355
    BCL11A-8623 - CUGGCCGAGGCCGAGGGCCAC 21 10356
    BCL11A-8624 - CCUGGCCGAGGCCGAGGGCCAC 22 10357
    BCL11A-8625 - ACCUGGCCGAGGCCGAGGGCCAC 23 10358
    BCL11A-8626 - CACCUGGCCGAGGCCGAGGGCCAC 24 10359
    BCL11A-8627 - CUCGGGGCGCAGCGGCAC 18 10360
    BCL11A-8628 - UCUCGGGGCGCAGCGGCAC 19 10361
    BCL11A-5953 - AUCUCGGGGCGCAGCGGCAC 20 10362
    BCL11A-8629 - GAUCUCGGGGCGCAGCGGCAC 21 10363
    BCL11A-8630 - GGAUCUCGGGGCGCAGCGGCAC 22 10364
    BCL11A-8631 - GGGAUCUCGGGGCGCAGCGGCAC 23 10365
    BCL11A-8632 - AGGGAUCUCGGGGCGCAGCGGCAC 24 10366
    BCL11A-8633 - CCACCACCGAGACAUCAC 18 10367
    BCL11A-8634 - UCCACCACCGAGACAUCAC 19 10368
    BCL11A-8635 - GUCCACCACCGAGACAUCAC 20 10369
    BCL11A-8636 - AGUCCACCACCGAGACAUCAC 21 10370
    BCL11A-8637 - UAGUCCACCACCGAGACAUCAC 22 10371
    BCL11A-8638 - UUAGUCCACCACCGAGACAUCAC 23 10372
    BCL11A-8639 - UUUAGUCCACCACCGAGACAUCAC 24 10373
    BCL11A-8640 - GAGGAAGAGGAGGACGAC 18 10374
    BCL11A-8641 - GGAGGAAGAGGAGGACGAC 19 10375
    BCL11A-3949 - AGGAGGAAGAGGAGGACGAC 20 10376
    BCL11A-8642 - GAGGAGGAAGAGGAGGACGAC 21 10377
    BCL11A-8643 - CGAGGAGGAAGAGGAGGACGAC 22 10378
    BCL11A-8644 - ACGAGGAGGAAGAGGAGGACGAC 23 10379
    BCL11A-8645 - GACGAGGAGGAAGAGGAGGACGAC 24 10380
    BCL11A-8646 - GUCGUGGGCGUGGGCGAC 18 10381
    BCL11A-8647 - GGUCGUGGGCGUGGGCGAC 19 10382
    BCL11A-8648 - CGGUCGUGGGCGUGGGCGAC 20 10383
    BCL11A-8649 - GCGGUCGUGGGCGUGGGCGAC 21 10384
    BCL11A-8650 - CGCGGUCGUGGGCGUGGGCGAC 22 10385
    BCL11A-8651 - GCGCGGUCGUGGGCGUGGGCGAC 23 10386
    BCL11A-8652 - GGCGCGGUCGUGGGCGUGGGCGAC 24 10387
    BCL11A-8653 - AUCCCGGAGAACGGGGAC 18 10388
    BCL11A-8654 - GAUCCCGGAGAACGGGGAC 19 10389
    BCL11A-8655 - UGAUCCCGGAGAACGGGGAC 20 10390
    BCL11A-8656 - CUGAUCCCGGAGAACGGGGAC 21 10391
    BCL11A-8657 - CCUGAUCCCGGAGAACGGGGAC 22 10392
    BCL11A-8658 - ACCUGAUCCCGGAGAACGGGGAC 23 10393
    BCL11A-8659 - AACCUGAUCCCGGAGAACGGGGAC 24 10394
    BCL11A-8660 - UGGAGGCGGCGCGCCACC 18 10395
    BCL11A-8661 - CUGGAGGCGGCGCGCCACC 19 10396
    BCL11A-8662 - CCUGGAGGCGGCGCGCCACC 20 10397
    BCL11A-8663 - GCCUGGAGGCGGCGCGCCACC 21 10398
    BCL11A-8664 - AGCCUGGAGGCGGCGCGCCACC 22 10399
    BCL11A-8665 - GAGCCUGGAGGCGGCGCGCCACC 23 10400
    BCL11A-8666 - UGAGCCUGGAGGCGGCGCGCCACC 24 10401
    BCL11A-8667 - CCCAUUCGGCGUAGUACC 18 10402
    BCL11A-8668 - CCCCAUUCGGCGUAGUACC 19 10403
    BCL11A-8669 - CCCCCAUUCGGCGUAGUACC 20 10404
    BCL11A-8670 - ACCCCCAUUCGGCGUAGUACC 21 10405
    BCL11A-8671 - CACCCCCAUUCGGCGUAGUACC 22 10406
    BCL11A-8672 - ACACCCCCAUUCGGCGUAGUACC 23 10407
    BCL11A-8673 - CACACCCCCAUUCGGCGUAGUACC 24 10408
    BCL11A-8674 - GAGAAAAUUUGAAGCCCC 18 10409
    BCL11A-8675 - UGAGAAAAUUUGAAGCCCC 19 10410
    BCL11A-8676 - CUGAGAAAAUUUGAAGCCCC 20 10411
    BCL11A-8677 - UCUGAGAAAAUUUGAAGCCCC 21 10412
    BCL11A-8678 - UUCUGAGAAAAUUUGAAGCCCC 22 10413
    BCL11A-8679 - GUUCUGAGAAAAUUUGAAGCCCC 23 10414
    BCL11A-8680 - AGUUCUGAGAAAAUUUGAAGCCCC 24 10415
    BCL11A-8681 - CGCUUCUCCACACCGCCC 18 10416
    BCL11A-8682 - GCGCUUCUCCACACCGCCC 19 10417
    BCL11A-5976 - UGCGCUUCUCCACACCGCCC 20 10418
    BCL11A-8683 - UUGCGCUUCUCCACACCGCCC 21 10419
    BCL11A-8684 - UUUGCGCUUCUCCACACCGCCC 22 10420
    BCL11A-8685 - GUUUGCGCUUCUCCACACCGCCC 23 10421
    BCL11A-8686 - AGUUUGCGCUUCUCCACACCGCCC 24 10422
    BCL11A-8687 - UCUCCACCGCCAGCUCCC 18 10423
    BCL11A-8688 - CUCUCCACCGCCAGCUCCC 19 10424
    BCL11A-5982 - UCUCUCCACCGCCAGCUCCC 20 10425
    BCL11A-8689 - GUCUCUCCACCGCCAGCUCCC 21 10426
    BCL11A-8690 - GGUCUCUCCACCGCCAGCUCCC 22 10427
    BCL11A-8691 - CGGUCUCUCCACCGCCAGCUCCC 23 10428
    BCL11A-8692 - ACGGUCUCUCCACCGCCAGCUCCC 24 10429
    BCL11A-8693 - ACGGCUUCGGGCUGAGCC 18 10430
    BCL11A-8694 - UACGGCUUCGGGCUGAGCC 19 10431
    BCL11A-5986 - CUACGGCUUCGGGCUGAGCC 20 10432
    BCL11A-8695 - ACUACGGCUUCGGGCUGAGCC 21 10433
    BCL11A-8696 - GACUACGGCUUCGGGCUGAGCC 22 10434
    BCL11A-8697 - GGACUACGGCUUCGGGCUGAGCC 23 10435
    BCL11A-8698 - UGGACUACGGCUUCGGGCUGAGCC 24 10436
    BCL11A-8699 - GCGCUUCUCCACACCGCC 18 10437
    BCL11A-8700 - UGCGCUUCUCCACACCGCC 19 10438
    BCL11A-5987 - UUGCGCUUCUCCACACCGCC 20 10439
    BCL11A-8701 - UUUGCGCUUCUCCACACCGCC 21 10440
    BCL11A-8702 - GUUUGCGCUUCUCCACACCGCC 22 10441
    BCL11A-8703 - AGUUUGCGCUUCUCCACACCGCC 23 10442
    BCL11A-8704 - GAGUUUGCGCUUCUCCACACCGCC 24 10443
    BCL11A-8705 - CCCACCGCAUAGAGCGCC 18 10444
    BCL11A-8706 - CCCCACCGCAUAGAGCGCC 19 10445
    BCL11A-5988 - CCCCCACCGCAUAGAGCGCC 20 10446
    BCL11A-8707 - ACCCCCACCGCAUAGAGCGCC 21 10447
    BCL11A-8708 - GACCCCCACCGCAUAGAGCGCC 22 10448
    BCL11A-8709 - GGACCCCCACCGCAUAGAGCGCC 23 10449
    BCL11A-8710 - UGGACCCCCACCGCAUAGAGCGCC 24 10450
    BCL11A-8711 - GGCCACCUGGCCGAGGCC 18 10451
    BCL11A-8712 - CGGCCACCUGGCCGAGGCC 19 10452
    BCL11A-8713 - GCGGCCACCUGGCCGAGGCC 20 10453
    BCL11A-8714 - CGCGGCCACCUGGCCGAGGCC 21 10454
    BCL11A-8715 - GCGCGGCCACCUGGCCGAGGCC 22 10455
    BCL11A-8716 - AGCGCGGCCACCUGGCCGAGGCC 23 10456
    BCL11A-8717 - AAGCGCGGCCACCUGGCCGAGGCC 24 10457
    BCL11A-8718 - UCCCCGGGCGAGUCGGCC 18 10458
    BCL11A-8719 - CUCCCCGGGCGAGUCGGCC 19 10459
    BCL11A-8720 - GCUCCCCGGGCGAGUCGGCC 20 10460
    BCL11A-8721 - UGCUCCCCGGGCGAGUCGGCC 21 10461
    BCL11A-8722 - CUGCUCCCCGGGCGAGUCGGCC 22 10462
    BCL11A-8723 - GCUGCUCCCCGGGCGAGUCGGCC 23 10463
    BCL11A-8724 - GGCUGCUCCCCGGGCGAGUCGGCC 24 10464
    BCL11A-8725 - ACGACCCCAACCUGAUCC 18 10465
    BCL11A-8726 - AACGACCCCAACCUGAUCC 19 10466
    BCL11A-6004 - GAACGACCCCAACCUGAUCC 20 10467
    BCL11A-8727 - AGAACGACCCCAACCUGAUCC 21 10468
    BCL11A-8728 - GAGAACGACCCCAACCUGAUCC 22 10469
    BCL11A-8729 - CGAGAACGACCCCAACCUGAUCC 23 10470
    BCL11A-8730 - GCGAGAACGACCCCAACCUGAUCC 24 10471
    BCL11A-8731 - UCCUCGUCGGAGCACUCC 18 10472
    BCL11A-8732 - CUCCUCGUCGGAGCACUCC 19 10473
    BCL11A-8733 - CCUCCUCGUCGGAGCACUCC 20 10474
    BCL11A-8734 - GCCUCCUCGUCGGAGCACUCC 21 10475
    BCL11A-8735 - UGCCUCCUCGUCGGAGCACUCC 22 10476
    BCL11A-8736 - UUGCCUCCUCGUCGGAGCACUCC 23 10477
    BCL11A-8737 - UUUGCCUCCUCGUCGGAGCACUCC 24 10478
    BCL11A-8738 - CUCUCCACCGCCAGCUCC 18 10479
    BCL11A-8739 - UCUCUCCACCGCCAGCUCC 19 10480
    BCL11A-8740 - GUCUCUCCACCGCCAGCUCC 20 10481
    BCL11A-8741 - GGUCUCUCCACCGCCAGCUCC 21 10482
    BCL11A-8742 - CGGUCUCUCCACCGCCAGCUCC 22 10483
    BCL11A-8743 - ACGGUCUCUCCACCGCCAGCUCC 23 10484
    BCL11A-8744 - GACGGUCUCUCCACCGCCAGCUCC 24 10485
    BCL11A-8745 - AAUGGCCGCGGCUGCUCC 18 10486
    BCL11A-8746 - UAAUGGCCGCGGCUGCUCC 19 10487
    BCL11A-8747 - UUAAUGGCCGCGGCUGCUCC 20 10488
    BCL11A-8748 - GUUAAUGGCCGCGGCUGCUCC 21 10489
    BCL11A-8749 - UGUUAAUGGCCGCGGCUGCUCC 22 10490
    BCL11A-8750 - CUGUUAAUGGCCGCGGCUGCUCC 23 10491
    BCL11A-8751 - ACUGUUAAUGGCCGCGGCUGCUCC 24 10492
    BCL11A-8752 - CUUCCCAGCCACCUCUCC 18 10493
    BCL11A-8753 - CCUUCCCAGCCACCUCUCC 19 10494
    BCL11A-8754 - UCCUUCCCAGCCACCUCUCC 20 10495
    BCL11A-8755 - GUCCUUCCCAGCCACCUCUCC 21 10496
    BCL11A-8756 - UGUCCUUCCCAGCCACCUCUCC 22 10497
    BCL11A-8757 - AUGUCCUUCCCAGCCACCUCUCC 23 10498
    BCL11A-8758 - AAUGUCCUUCCCAGCCACCUCUCC 24 10499
    BCL11A-8759 - UCUCUAAGCGCAUCAAGC 18 10500
    BCL11A-8760 - UUCUCUAAGCGCAUCAAGC 19 10501
    BCL11A-8761 - CUUCUCUAAGCGCAUCAAGC 20 10502
    BCL11A-8762 - CCUUCUCUAAGCGCAUCAAGC 21 10503
    BCL11A-8763 - CCCUUCUCUAAGCGCAUCAAGC 22 10504
    BCL11A-8764 - CCCCUUCUCUAAGCGCAUCAAGC 23 10505
    BCL11A-8765 - GCCCCUUCUCUAAGCGCAUCAAGC 24 10506
    BCL11A-8766 - CAGUUUUCGGAUGGAAGC 18 10507
    BCL11A-8767 - GCAGUUUUCGGAUGGAAGC 19 10508
    BCL11A-8768 - GGCAGUUUUCGGAUGGAAGC 20 10509
    BCL11A-8769 - UGGCAGUUUUCGGAUGGAAGC 21 10510
    BCL11A-8770 - GUGGCAGUUUUCGGAUGGAAGC 22 10511
    BCL11A-8771 - UGUGGCAGUUUUCGGAUGGAAGC 23 10512
    BCL11A-8772 - GUGUGGCAGUUUUCGGAUGGAAGC 24 10513
    BCL11A-8773 - GUGGCCAAGUUCAAGAGC 18 10514
    BCL11A-8774 - GGUGGCCAAGUUCAAGAGC 19 10515
    BCL11A-8775 - UGGUGGCCAAGUUCAAGAGC 20 10516
    BCL11A-8776 - GUGGUGGCCAAGUUCAAGAGC 21 10517
    BCL11A-8777 - CGUGGUGGCCAAGUUCAAGAGC 22 10518
    BCL11A-8778 - CCGUGGUGGCCAAGUUCAAGAGC 23 10519
    BCL11A-8779 - UCCGUGGUGGCCAAGUUCAAGAGC 24 10520
    BCL11A-8780 - GAGGAGCUGACGGAGAGC 18 10521
    BCL11A-8781 - GGAGGAGCUGACGGAGAGC 19 10522
    BCL11A-8782 - AGGAGGAGCUGACGGAGAGC 20 10523
    BCL11A-8783 - GAGGAGGAGCUGACGGAGAGC 21 10524
    BCL11A-8784 - GGAGGAGGAGCUGACGGAGAGC 22 10525
    BCL11A-8785 - AGGAGGAGGAGCUGACGGAGAGC 23 10526
    BCL11A-8786 - GAGGAGGAGGAGCUGACGGAGAGC 24 10527
    BCL11A-8787 - UACGGCUUCGGGCUGAGC 18 10528
    BCL11A-8788 - CUACGGCUUCGGGCUGAGC 19 10529
    BCL11A-8789 - ACUACGGCUUCGGGCUGAGC 20 10530
    BCL11A-8790 - GACUACGGCUUCGGGCUGAGC 21 10531
    BCL11A-8791 - GGACUACGGCUUCGGGCUGAGC 22 10532
    BCL11A-8792 - UGGACUACGGCUUCGGGCUGAGC 23 10533
    BCL11A-8793 - GUGGACUACGGCUUCGGGCUGAGC 24 10534
    BCL11A-8794 - UGCGCUUCUCCACACCGC 18 10535
    BCL11A-8795 - UUGCGCUUCUCCACACCGC 19 10536
    BCL11A-8796 - UUUGCGCUUCUCCACACCGC 20 10537
    BCL11A-8797 - GUUUGCGCUUCUCCACACCGC 21 10538
    BCL11A-8798 - AGUUUGCGCUUCUCCACACCGC 22 10539
    BCL11A-8799 - GAGUUUGCGCUUCUCCACACCGC 23 10540
    BCL11A-8800 - GGAGUUUGCGCUUCUCCACACCGC 24 10541
    BCL11A-8801 - CCCCACCGCAUAGAGCGC 18 10542
    BCL11A-8802 - CCCCCACCGCAUAGAGCGC 19 10543
    BCL11A-8803 - ACCCCCACCGCAUAGAGCGC 20 10544
    BCL11A-8804 - GACCCCCACCGCAUAGAGCGC 21 10545
    BCL11A-8805 - GGACCCCCACCGCAUAGAGCGC 22 10546
    BCL11A-8806 - UGGACCCCCACCGCAUAGAGCGC 23 10547
    BCL11A-8807 - UUGGACCCCCACCGCAUAGAGCGC 24 10548
    BCL11A-8808 - AUCUCGGGGCGCAGCGGC 18 10549
    BCL11A-8809 - GAUCUCGGGGCGCAGCGGC 19 10550
    BCL11A-8810 - GGAUCUCGGGGCGCAGCGGC 20 10551
    BCL11A-8811 - GGGAUCUCGGGGCGCAGCGGC 21 10552
    BCL11A-8812 - AGGGAUCUCGGGGCGCAGCGGC 22 10553
    BCL11A-8813 - GAGGGAUCUCGGGGCGCAGCGGC 23 10554
    BCL11A-8814 - GGAGGGAUCUCGGGGCGCAGCGGC 24 10555
    BCL11A-8815 - CGGCGCAGCCACACGGGC 18 10556
    BCL11A-8816 - CCGGCGCAGCCACACGGGC 19 10557
    BCL11A-3804 - ACCGGCGCAGCCACACGGGC 20 10558
    BCL11A-8817 - CACCGGCGCAGCCACACGGGC 21 10559
    BCL11A-8818 - GCACCGGCGCAGCCACACGGGC 22 10560
    BCL11A-8819 - UGCACCGGCGCAGCCACACGGGC 23 10561
    BCL11A-8820 - GUGCACCGGCGCAGCCACACGGGC 24 10562
    BCL11A-8821 - CAUAUUAGUGGUCCGGGC 18 10563
    BCL11A-8822 - CCAUAUUAGUGGUCCGGGC 19 10564
    BCL11A-8823 - CCCAUAUUAGUGGUCCGGGC 20 10565
    BCL11A-8824 - CCCCAUAUUAGUGGUCCGGGC 21 10566
    BCL11A-8825 - GCCCCAUAUUAGUGGUCCGGGC 22 10567
    BCL11A-8826 - CGCCCCAUAUUAGUGGUCCGGGC 23 10568
    BCL11A-8827 - ACGCCCCAUAUUAGUGGUCCGGGC 24 10569
    BCL11A-8828 - UUCCACCAGGUCCUGGGC 18 10570
    BCL11A-8829 - CUUCCACCAGGUCCUGGGC 19 10571
    BCL11A-8830 - CCUUCCACCAGGUCCUGGGC 20 10572
    BCL11A-8831 - GCCUUCCACCAGGUCCUGGGC 21 10573
    BCL11A-8832 - GGCCUUCCACCAGGUCCUGGGC 22 10574
    BCL11A-8833 - AGGCCUUCCACCAGGUCCUGGGC 23 10575
    BCL11A-8834 - GAGGCCUUCCACCAGGUCCUGGGC 24 10576
    BCL11A-8835 - CGGGGCGCGGUCGUGGGC 18 10577
    BCL11A-8836 - GCGGGGCGCGGUCGUGGGC 19 10578
    BCL11A-8837 - CGCGGGGCGCGGUCGUGGGC 20 10579
    BCL11A-8838 - UCGCGGGGCGCGGUCGUGGGC 21 10580
    BCL11A-8839 - CUCGCGGGGCGCGGUCGUGGGC 22 10581
    BCL11A-8840 - GCUCGCGGGGCGCGGUCGUGGGC 23 10582
    BCL11A-8841 - AGCUCGCGGGGCGCGGUCGUGGGC 24 10583
    BCL11A-8842 - GAGACUUAGAGAGCUGGC 18 10584
    BCL11A-8843 - GGAGACUUAGAGAGCUGGC 19 10585
    BCL11A-6037 - AGGAGACUUAGAGAGCUGGC 20 10586
    BCL11A-8844 - UAGGAGACUUAGAGAGCUGGC 21 10587
    BCL11A-8845 - CUAGGAGACUUAGAGAGCUGGC 22 10588
    BCL11A-8846 - UCUAGGAGACUUAGAGAGCUGGC 23 10589
    BCL11A-8847 - CUCUAGGAGACUUAGAGAGCUGGC 24 10590
    BCL11A-8848 - GAGCUGGACGGAGGGAUC 18 10591
    BCL11A-8849 - GGAGCUGGACGGAGGGAUC 19 10592
    BCL11A-8850 - GGGAGCUGGACGGAGGGAUC 20 10593
    BCL11A-8851 - GGGGAGCUGGACGGAGGGAUC 21 10594
    BCL11A-8852 - CGGGGAGCUGGACGGAGGGAUC 22 10595
    BCL11A-8853 - CCGGGGAGCUGGACGGAGGGAUC 23 10596
    BCL11A-8854 - CCCGGGGAGCUGGACGGAGGGAUC 24 10597
    BCL11A-8855 - AACGACCCCAACCUGAUC 18 10598
    BCL11A-8856 - GAACGACCCCAACCUGAUC 19 10599
    BCL11A-8857 - AGAACGACCCCAACCUGAUC 20 10600
    BCL11A-8858 - GAGAACGACCCCAACCUGAUC 21 10601
    BCL11A-8859 - CGAGAACGACCCCAACCUGAUC 22 10602
    BCL11A-8860 - GCGAGAACGACCCCAACCUGAUC 23 10603
    BCL11A-8861 - AGCGAGAACGACCCCAACCUGAUC 24 10604
    BCL11A-8862 - AAUACCAGGAUCAGUAUC 18 10605
    BCL11A-8863 - GAAUACCAGGAUCAGUAUC 19 10606
    BCL11A-8864 - AGAAUACCAGGAUCAGUAUC 20 10607
    BCL11A-8865 - AAGAAUACCAGGAUCAGUAUC 21 10608
    BCL11A-8866 - UAAGAAUACCAGGAUCAGUAUC 22 10609
    BCL11A-8867 - CUAAGAAUACCAGGAUCAGUAUC 23 10610
    BCL11A-8868 - GCUAAGAAUACCAGGAUCAGUAUC 24 10611
    BCL11A-8869 - CCCGGGCGAGUCGGCCUC 18 10612
    BCL11A-8870 - CCCCGGGCGAGUCGGCCUC 19 10613
    BCL11A-6047 - UCCCCGGGCGAGUCGGCCUC 20 10614
    BCL11A-8871 - CUCCCCGGGCGAGUCGGCCUC 21 10615
    BCL11A-8872 - GCUCCCCGGGCGAGUCGGCCUC 22 10616
    BCL11A-8873 - UGCUCCCCGGGCGAGUCGGCCUC 23 10617
    BCL11A-8874 - CUGCUCCCCGGGCGAGUCGGCCUC 24 10618
    BCL11A-8875 - UCUAAGCGCAUCAAGCUC 18 10619
    BCL11A-8876 - CUCUAAGCGCAUCAAGCUC 19 10620
    BCL11A-8877 - UCUCUAAGCGCAUCAAGCUC 20 10621
    BCL11A-8878 - UUCUCUAAGCGCAUCAAGCUC 21 10622
    BCL11A-8879 - CUUCUCUAAGCGCAUCAAGCUC 22 10623
    BCL11A-8880 - CCUUCUCUAAGCGCAUCAAGCUC 23 10624
    BCL11A-8881 - CCCUUCUCUAAGCGCAUCAAGCUC 24 10625
    BCL11A-8882 - GUUUUCGGAUGGAAGCUC 18 10626
    BCL11A-8883 - AGUUUUCGGAUGGAAGCUC 19 10627
    BCL11A-8884 - CAGUUUUCGGAUGGAAGCUC 20 10628
    BCL11A-8885 - GCAGUUUUCGGAUGGAAGCUC 21 10629
    BCL11A-8886 - GGCAGUUUUCGGAUGGAAGCUC 22 10630
    BCL11A-8887 - UGGCAGUUUUCGGAUGGAAGCUC 23 10631
    BCL11A-8888 - GUGGCAGUUUUCGGAUGGAAGCUC 24 10632
    BCL11A-8889 - CCACCACGAGAACAGCUC 18 10633
    BCL11A-8890 - GCCACCACGAGAACAGCUC 19 10634
    BCL11A-8891 - CGCCACCACGAGAACAGCUC 20 10635
    BCL11A-8892 - GCGCCACCACGAGAACAGCUC 21 10636
    BCL11A-8893 - CGCGCCACCACGAGAACAGCUC 22 10637
    BCL11A-8894 - GCGCGCCACCACGAGAACAGCUC 23 10638
    BCL11A-8895 - GGCGCGCCACCACGAGAACAGCUC 24 10639
    BCL11A-8896 - UCCCGCCAUGGAUUUCUC 18 10640
    BCL11A-8897 - CUCCCGCCAUGGAUUUCUC 19 10641
    BCL11A-8898 - CCUCCCGCCAUGGAUUUCUC 20 10642
    BCL11A-8899 - GCCUCCCGCCAUGGAUUUCUC 21 10643
    BCL11A-8900 - AGCCUCCCGCCAUGGAUUUCUC 22 10644
    BCL11A-8901 - GAGCCUCCCGCCAUGGAUUUCUC 23 10645
    BCL11A-8902 - GGAGCCUCCCGCCAUGGAUUUCUC 24 10646
    BCL11A-8903 - GAGGCCUUCCACCAGGUC 18 10647
    BCL11A-8904 - CGAGGCCUUCCACCAGGUC 19 10648
    BCL11A-8905 - GCGAGGCCUUCCACCAGGUC 20 10649
    BCL11A-8906 - AGCGAGGCCUUCCACCAGGUC 21 10650
    BCL11A-8907 - CAGCGAGGCCUUCCACCAGGUC 22 10651
    BCL11A-8908 - UCAGCGAGGCCUUCCACCAGGUC 23 10652
    BCL11A-8909 - UUCAGCGAGGCCUUCCACCAGGUC 24 10653
    BCL11A-8910 - AGCUCGCGGGGCGCGGUC 18 10654
    BCL11A-8911 - CAGCUCGCGGGGCGCGGUC 19 10655
    BCL11A-8912 - ACAGCUCGCGGGGCGCGGUC 20 10656
    BCL11A-8913 - AACAGCUCGCGGGGCGCGGUC 21 10657
    BCL11A-8914 - GAACAGCUCGCGGGGCGCGGUC 22 10658
    BCL11A-8915 - AGAACAGCUCGCGGGGCGCGGUC 23 10659
    BCL11A-8916 - GAGAACAGCUCGCGGGGCGCGGUC 24 10660
    BCL11A-8917 - UACUGUGGGAAAGUCUUC 18 10661
    BCL11A-8918 - GUACUGUGGGAAAGUCUUC 19 10662
    BCL11A-8919 - AGUACUGUGGGAAAGUCUUC 20 10663
    BCL11A-8920 - GAGUACUGUGGGAAAGUCUUC 21 10664
    BCL11A-8921 - UGAGUACUGUGGGAAAGUCUUC 22 10665
    BCL11A-8922 - GUGAGUACUGUGGGAAAGUCUUC 23 10666
    BCL11A-8923 - UGUGAGUACUGUGGGAAAGUCUUC 24 10667
    BCL11A-8924 - UCCGUGGUGGCCAAGUUC 18 10668
    BCL11A-8925 - GUCCGUGGUGGCCAAGUUC 19 10669
    BCL11A-8926 - AGUCCGUGGUGGCCAAGUUC 20 10670
    BCL11A-8927 - AAGUCCGUGGUGGCCAAGUUC 21 10671
    BCL11A-8928 - CAAGUCCGUGGUGGCCAAGUUC 22 10672
    BCL11A-8929 - UCAAGUCCGUGGUGGCCAAGUUC 23 10673
    BCL11A-8930 - CUCAAGUCCGUGGUGGCCAAGUUC 24 10674
    BCL11A-6826 - AUUAUUUUGCAGGUAAAG 18 10675
    BCL11A-6827 - UAUUAUUUUGCAGGUAAAG 19 10676
    BCL11A-6828 - GUAUUAUUUUGCAGGUAAAG 20 10677
    BCL11A-8931 - UGCACCCAGGCCAGCAAG 18 10678
    BCL11A-8932 - GUGCACCCAGGCCAGCAAG 19 10679
    BCL11A-8933 - CGUGCACCCAGGCCAGCAAG 20 10680
    BCL11A-8934 - GCGUGCACCCAGGCCAGCAAG 21 10681
    BCL11A-8935 - CGCGUGCACCCAGGCCAGCAAG 22 10682
    BCL11A-8936 - ACGCGUGCACCCAGGCCAGCAAG 23 10683
    BCL11A-8937 - CACGCGUGCACCCAGGCCAGCAAG 24 10684
    BCL11A-8938 - ACGAGGAAGAGGAAGAAG 18 10685
    BCL11A-8939 - GACGAGGAAGAGGAAGAAG 19 10686
    BCL11A-3449 - CGACGAGGAAGAGGAAGAAG 20 10687
    BCL11A-8940 - ACGACGAGGAAGAGGAAGAAG 21 10688
    BCL11A-8941 - GACGACGAGGAAGAGGAAGAAG 22 10689
    BCL11A-8942 - GGACGACGAGGAAGAGGAAGAAG 23 10690
    BCL11A-8943 - AGGACGACGAGGAAGAGGAAGAAG 24 10691
    BCL11A-8944 - ACGACGAGGAAGAGGAAG 18 10692
    BCL11A-8945 - GACGACGAGGAAGAGGAAG 19 10693
    BCL11A-3959 - GGACGACGAGGAAGAGGAAG 20 10694
    BCL11A-8946 - AGGACGACGAGGAAGAGGAAG 21 10695
    BCL11A-8947 - GAGGACGACGAGGAAGAGGAAG 22 10696
    BCL11A-8948 - GGAGGACGACGAGGAAGAGGAAG 23 10697
    BCL11A-8949 - AGGAGGACGACGAGGAAGAGGAAG 24 10698
    BCL11A-8950 - AGGAGGACGACGAGGAAG 18 10699
    BCL11A-8951 - GAGGAGGACGACGAGGAAG 19 10700
    BCL11A-3448 - AGAGGAGGACGACGAGGAAG 20 10701
    BCL11A-8952 - AAGAGGAGGACGACGAGGAAG 21 10702
    BCL11A-8953 - GAAGAGGAGGACGACGAGGAAG 22 10703
    BCL11A-8954 - GGAAGAGGAGGACGACGAGGAAG 23 10704
    BCL11A-8955 - AGGAAGAGGAGGACGACGAGGAAG 24 10705
    BCL11A-8956 - AGGAAGAAGAGGAGGAAG 18 10706
    BCL11A-8957 - GAGGAAGAAGAGGAGGAAG 19 10707
    BCL11A-3453 - AGAGGAAGAAGAGGAGGAAG 20 10708
    BCL11A-8958 - AAGAGGAAGAAGAGGAGGAAG 21 10709
    BCL11A-8959 - GAAGAGGAAGAAGAGGAGGAAG 22 10710
    BCL11A-8960 - GGAAGAGGAAGAAGAGGAGGAAG 23 10711
    BCL11A-8961 - AGGAAGAGGAAGAAGAGGAGGAAG 24 10712
    BCL11A-8962 - ACGGGGACGAGGAGGAAG 18 10713
    BCL11A-8963 - AACGGGGACGAGGAGGAAG 19 10714
    BCL11A-3441 - GAACGGGGACGAGGAGGAAG 20 10715
    BCL11A-8964 - AGAACGGGGACGAGGAGGAAG 21 10716
    BCL11A-8965 - GAGAACGGGGACGAGGAGGAAG 22 10717
    BCL11A-8966 - GGAGAACGGGGACGAGGAGGAAG 23 10718
    BCL11A-8967 - CGGAGAACGGGGACGAGGAGGAAG 24 10719
    BCL11A-8968 - GCGCAGCGGCACGGGAAG 18 10720
    BCL11A-8969 - GGCGCAGCGGCACGGGAAG 19 10721
    BCL11A-3376 - GGGCGCAGCGGCACGGGAAG 20 10722
    BCL11A-8970 - GGGGCGCAGCGGCACGGGAAG 21 10723
    BCL11A-8971 - CGGGGCGCAGCGGCACGGGAAG 22 10724
    BCL11A-8972 - UCGGGGCGCAGCGGCACGGGAAG 23 10725
    BCL11A-8973 - CUCGGGGCGCAGCGGCACGGGAAG 24 10726
    BCL11A-8974 - AGGCUUCCGGCCUGGCAG 18 10727
    BCL11A-8975 - GAGGCUUCCGGCCUGGCAG 19 10728
    BCL11A-8976 - AGAGGCUUCCGGCCUGGCAG 20 10729
    BCL11A-8977 - GAGAGGCUUCCGGCCUGGCAG 21 10730
    BCL11A-8978 - AGAGAGGCUUCCGGCCUGGCAG 22 10731
    BCL11A-8979 - GAGAGAGGCUUCCGGCCUGGCAG 23 10732
    BCL11A-8980 - CGAGAGAGGCUUCCGGCCUGGCAG 24 10733
    BCL11A-8981 - GAGGAAGAGGAAGAAGAG 18 10734
    BCL11A-8982 - CGAGGAAGAGGAAGAAGAG 19 10735
    BCL11A-3948 - ACGAGGAAGAGGAAGAAGAG 20 10736
    BCL11A-8983 - GACGAGGAAGAGGAAGAAGAG 21 10737
    BCL11A-8984 - CGACGAGGAAGAGGAAGAAGAG 22 10738
    BCL11A-8985 - ACGACGAGGAAGAGGAAGAAGAG 23 10739
    BCL11A-8986 - GACGACGAGGAAGAGGAAGAAGAG 24 10740
    BCL11A-8987 - GAAGAAGAGGAGGAAGAG 18 10741
    BCL11A-8988 - GGAAGAAGAGGAGGAAGAG 19 10742
    BCL11A-3961 - AGGAAGAAGAGGAGGAAGAG 20 10743
    BCL11A-8989 - GAGGAAGAAGAGGAGGAAGAG 21 10744
    BCL11A-8990 - AGAGGAAGAAGAGGAGGAAGAG 22 10745
    BCL11A-8991 - AAGAGGAAGAAGAGGAGGAAGAG 23 10746
    BCL11A-8992 - GAAGAGGAAGAAGAGGAGGAAGAG 24 10747
    BCL11A-8993 - GGGGACGAGGAGGAAGAG 18 10748
    BCL11A-8994 - CGGGGACGAGGAGGAAGAG 19 10749
    BCL11A-3945 - ACGGGGACGAGGAGGAAGAG 20 10750
    BCL11A-8995 - AACGGGGACGAGGAGGAAGAG 21 10751
    BCL11A-8996 - GAACGGGGACGAGGAGGAAGAG 22 10752
    BCL11A-8997 - AGAACGGGGACGAGGAGGAAGAG 23 10753
    BCL11A-8998 - GAGAACGGGGACGAGGAGGAAGAG 24 10754
    BCL11A-8999 - CCGGAGAACGGGGACGAG 18 10755
    BCL11A-9000 - CCCGGAGAACGGGGACGAG 19 10756
    BCL11A-9001 - UCCCGGAGAACGGGGACGAG 20 10757
    BCL11A-9002 - AUCCCGGAGAACGGGGACGAG 21 10758
    BCL11A-9003 - GAUCCCGGAGAACGGGGACGAG 22 10759
    BCL11A-9004 - UGAUCCCGGAGAACGGGGACGAG 23 10760
    BCL11A-9005 - CUGAUCCCGGAGAACGGGGACGAG 24 10761
    BCL11A-9006 - GACUCGGUGGCCGGCGAG 18 10762
    BCL11A-9007 - AGACUCGGUGGCCGGCGAG 19 10763
    BCL11A-9008 - AAGACUCGGUGGCCGGCGAG 20 10764
    BCL11A-9009 - GAAGACUCGGUGGCCGGCGAG 21 10765
    BCL11A-9010 - CGAAGACUCGGUGGCCGGCGAG 22 10766
    BCL11A-9011 - ACGAAGACUCGGUGGCCGGCGAG 23 10767
    BCL11A-9012 - GACGAAGACUCGGUGGCCGGCGAG 24 10768
    BCL11A-9013 - AAGCGCAUCAAGCUCGAG 18 10769
    BCL11A-9014 - UAAGCGCAUCAAGCUCGAG 19 10770
    BCL11A-9015 - CUAAGCGCAUCAAGCUCGAG 20 10771
    BCL11A-9016 - UCUAAGCGCAUCAAGCUCGAG 21 10772
    BCL11A-9017 - CUCUAAGCGCAUCAAGCUCGAG 22 10773
    BCL11A-9018 - UCUCUAAGCGCAUCAAGCUCGAG 23 10774
    BCL11A-9019 - UUCUCUAAGCGCAUCAAGCUCGAG 24 10775
    BCL11A-9020 - GAAGAGGAGGAAGAGGAG 18 10776
    BCL11A-9021 - AGAAGAGGAGGAAGAGGAG 19 10777
    BCL11A-3964 - AAGAAGAGGAGGAAGAGGAG 20 10778
    BCL11A-9022 - GAAGAAGAGGAGGAAGAGGAG 21 10779
    BCL11A-9023 - GGAAGAAGAGGAGGAAGAGGAG 22 10780
    BCL11A-9024 - AGGAAGAAGAGGAGGAAGAGGAG 23 10781
    BCL11A-9025 - GAGGAAGAAGAGGAGGAAGAGGAG 24 10782
    BCL11A-9026 - GAGGAGGAAGAGGAGGAG 18 10783
    BCL11A-9027 - AGAGGAGGAAGAGGAGGAG 19 10784
    BCL11A-3965 - AAGAGGAGGAAGAGGAGGAG 20 10785
    BCL11A-9028 - GAAGAGGAGGAAGAGGAGGAG 21 10786
    BCL11A-9029 - AGAAGAGGAGGAAGAGGAGGAG 22 10787
    BCL11A-9030 - AAGAAGAGGAGGAAGAGGAGGAG 23 10788
    BCL11A-9031 - GAAGAAGAGGAGGAAGAGGAGGAG 24 10789
    BCL11A-9032 - UCCACACCGCCCGGGGAG 18 10790
    BCL11A-9033 - CUCCACACCGCCCGGGGAG 19 10791
    BCL11A-9034 - UCUCCACACCGCCCGGGGAG 20 10792
    BCL11A-9035 - UUCUCCACACCGCCCGGGGAG 21 10793
    BCL11A-9036 - CUUCUCCACACCGCCCGGGGAG 22 10794
    BCL11A-9037 - GCUUCUCCACACCGCCCGGGGAG 23 10795
    BCL11A-9038 - CGCUUCUCCACACCGCCCGGGGAG 24 10796
    BCL11A-9039 - GCCGCGAUGCCCAACACG 18 10797
    BCL11A-9040 - GGCCGCGAUGCCCAACACG 19 10798
    BCL11A-9041 - CGGCCGCGAUGCCCAACACG 20 10799
    BCL11A-9042 - CCGGCCGCGAUGCCCAACACG 21 10800
    BCL11A-9043 - CCCGGCCGCGAUGCCCAACACG 22 10801
    BCL11A-9044 - CCCCGGCCGCGAUGCCCAACACG 23 10802
    BCL11A-9045 - CCCCCGGCCGCGAUGCCCAACACG 24 10803
    BCL11A-9046 - AGGAAGAGGAGGACGACG 18 10804
    BCL11A-9047 - GAGGAAGAGGAGGACGACG 19 10805
    BCL11A-3450 - GGAGGAAGAGGAGGACGACG 20 10806
    BCL11A-9048 - AGGAGGAAGAGGAGGACGACG 21 10807
    BCL11A-9049 - GAGGAGGAAGAGGAGGACGACG 22 10808
    BCL11A-9050 - CGAGGAGGAAGAGGAGGACGACG 23 10809
    BCL11A-9051 - ACGAGGAGGAAGAGGAGGACGACG 24 10810
    BCL11A-9052 - AGGAGGAAGAGGAGGACG 18 10811
    BCL11A-9053 - GAGGAGGAAGAGGAGGACG 19 10812
    BCL11A-3953 - CGAGGAGGAAGAGGAGGACG 20 10813
    BCL11A-9054 - ACGAGGAGGAAGAGGAGGACG 21 10814
    BCL11A-9055 - GACGAGGAGGAAGAGGAGGACG 22 10815
    BCL11A-9056 - GGACGAGGAGGAAGAGGAGGACG 23 10816
    BCL11A-9057 - GGGACGAGGAGGAAGAGGAGGACG 24 10817
    BCL11A-9058 - UCCCGGAGAACGGGGACG 18 10818
    BCL11A-9059 - AUCCCGGAGAACGGGGACG 19 10819
    BCL11A-6081 - GAUCCCGGAGAACGGGGACG 20 10820
    BCL11A-9060 - UGAUCCCGGAGAACGGGGACG 21 10821
    BCL11A-9061 - CUGAUCCCGGAGAACGGGGACG 22 10822
    BCL11A-9062 - CCUGAUCCCGGAGAACGGGGACG 23 10823
    BCL11A-9063 - ACCUGAUCCCGGAGAACGGGGACG 24 10824
    BCL11A-9064 - CGCCCGGGGAGCUGGACG 18 10825
    BCL11A-9065 - CCGCCCGGGGAGCUGGACG 19 10826
    BCL11A-9066 - ACCGCCCGGGGAGCUGGACG 20 10827
    BCL11A-9067 - CACCGCCCGGGGAGCUGGACG 21 10828
    BCL11A-9068 - ACACCGCCCGGGGAGCUGGACG 22 10829
    BCL11A-9069 - CACACCGCCCGGGGAGCUGGACG 23 10830
    BCL11A-9070 - CCACACCGCCCGGGGAGCUGGACG 24 10831
    BCL11A-9071 - GAGGAGGAGGAGCUGACG 18 10832
    BCL11A-9072 - GGAGGAGGAGGAGCUGACG 19 10833
    BCL11A-9073 - AGGAGGAGGAGGAGCUGACG 20 10834
    BCL11A-9074 - GAGGAGGAGGAGGAGCUGACG 21 10835
    BCL11A-9075 - AGAGGAGGAGGAGGAGCUGACG 22 10836
    BCL11A-9076 - AAGAGGAGGAGGAGGAGCUGACG 23 10837
    BCL11A-9077 - GAAGAGGAGGAGGAGGAGCUGACG 24 10838
    BCL11A-9078 - GCUUCUCCACACCGCCCG 18 10839
    BCL11A-9079 - CGCUUCUCCACACCGCCCG 19 10840
    BCL11A-6087 - GCGCUUCUCCACACCGCCCG 20 10841
    BCL11A-9080 - UGCGCUUCUCCACACCGCCCG 21 10842
    BCL11A-9081 - UUGCGCUUCUCCACACCGCCCG 22 10843
    BCL11A-9082 - UUUGCGCUUCUCCACACCGCCCG 23 10844
    BCL11A-9083 - GUUUGCGCUUCUCCACACCGCCCG 24 10845
    BCL11A-9084 - GACCCCAACCUGAUCCCG 18 10846
    BCL11A-9085 - CGACCCCAACCUGAUCCCG 19 10847
    BCL11A-9086 - ACGACCCCAACCUGAUCCCG 20 10848
    BCL11A-9087 - AACGACCCCAACCUGAUCCCG 21 10849
    BCL11A-9088 - GAACGACCCCAACCUGAUCCCG 22 10850
    BCL11A-9089 - AGAACGACCCCAACCUGAUCCCG 23 10851
    BCL11A-9090 - GAGAACGACCCCAACCUGAUCCCG 24 10852
    BCL11A-9091 - CGGUCGUGGGCGUGGGCG 18 10853
    BCL11A-9092 - GCGGUCGUGGGCGUGGGCG 19 10854
    BCL11A-9093 - CGCGGUCGUGGGCGUGGGCG 20 10855
    BCL11A-9094 - GCGCGGUCGUGGGCGUGGGCG 21 10856
    BCL11A-9095 - GGCGCGGUCGUGGGCGUGGGCG 22 10857
    BCL11A-9096 - GGGCGCGGUCGUGGGCGUGGGCG 23 10858
    BCL11A-9097 - GGGGCGCGGUCGUGGGCGUGGGCG 24 10859
    BCL11A-9098 - GCCACAGGGACACUUGCG 18 10860
    BCL11A-9099 - GGCCACAGGGACACUUGCG 19 10861
    BCL11A-9100 - GGGCCACAGGGACACUUGCG 20 10862
    BCL11A-9101 - AGGGCCACAGGGACACUUGCG 21 10863
    BCL11A-9102 - GAGGGCCACAGGGACACUUGCG 22 10864
    BCL11A-9103 - CGAGGGCCACAGGGACACUUGCG 23 10865
    BCL11A-9104 - CCGAGGGCCACAGGGACACUUGCG 24 10866
    BCL11A-9105 - CCGGGCGAGUCGGCCUCG 18 10867
    BCL11A-9106 - CCCGGGCGAGUCGGCCUCG 19 10868
    BCL11A-6106 - CCCCGGGCGAGUCGGCCUCG 20 10869
    BCL11A-9107 - UCCCCGGGCGAGUCGGCCUCG 21 10870
    BCL11A-9108 - CUCCCCGGGCGAGUCGGCCUCG 22 10871
    BCL11A-9109 - GCUCCCCGGGCGAGUCGGCCUCG 23 10872
    BCL11A-9110 - UGCUCCCCGGGCGAGUCGGCCUCG 24 10873
    BCL11A-9111 - UCGUCGGAGCACUCCUCG 18 10874
    BCL11A-9112 - CUCGUCGGAGCACUCCUCG 19 10875
    BCL11A-9113 - CCUCGUCGGAGCACUCCUCG 20 10876
    BCL11A-9114 - UCCUCGUCGGAGCACUCCUCG 21 10877
    BCL11A-9115 - CUCCUCGUCGGAGCACUCCUCG 22 10878
    BCL11A-9116 - CCUCCUCGUCGGAGCACUCCUCG 23 10879
    BCL11A-9117 - GCCUCCUCGUCGGAGCACUCCUCG 24 10880
    BCL11A-9118 - UCGCCUUUUGCCUCCUCG 18 10881
    BCL11A-9119 - AUCGCCUUUUGCCUCCUCG 19 10882
    BCL11A-9120 - AAUCGCCUUUUGCCUCCUCG 20 10883
    BCL11A-9121 - CAAUCGCCUUUUGCCUCCUCG 21 10884
    BCL11A-9122 - ACAAUCGCCUUUUGCCUCCUCG 22 10885
    BCL11A-9123 - GACAAUCGCCUUUUGCCUCCUCG 23 10886
    BCL11A-9124 - AGACAAUCGCCUUUUGCCUCCUCG 24 10887
    BCL11A-9125 - CACCACGAGAACAGCUCG 18 10888
    BCL11A-9126 - CCACCACGAGAACAGCUCG 19 10889
    BCL11A-6107 - GCCACCACGAGAACAGCUCG 20 10890
    BCL11A-9127 - CGCCACCACGAGAACAGCUCG 21 10891
    BCL11A-9128 - GCGCCACCACGAGAACAGCUCG 22 10892
    BCL11A-9129 - CGCGCCACCACGAGAACAGCUCG 23 10893
    BCL11A-9130 - GCGCGCCACCACGAGAACAGCUCG 24 10894
    BCL11A-9131 - CUGGGCAGCCCCAGCUCG 18 10895
    BCL11A-9132 - GCUGGGCAGCCCCAGCUCG 19 10896
    BCL11A-9133 - UGCUGGGCAGCCCCAGCUCG 20 10897
    BCL11A-9134 - CUGCUGGGCAGCCCCAGCUCG 21 10898
    BCL11A-9135 - GCUGCUGGGCAGCCCCAGCUCG 22 10899
    BCL11A-9136 - UGCUGCUGGGCAGCCCCAGCUCG 23 10900
    BCL11A-9137 - CUGCUGCUGGGCAGCCCCAGCUCG 24 10901
    BCL11A-9138 - AGGAAGAGGAAGAAGAGG 18 10902
    BCL11A-9139 - GAGGAAGAGGAAGAAGAGG 19 10903
    BCL11A-3451 - CGAGGAAGAGGAAGAAGAGG 20 10904
    BCL11A-9140 - ACGAGGAAGAGGAAGAAGAGG 21 10905
    BCL11A-9141 - GACGAGGAAGAGGAAGAAGAGG 22 10906
    BCL11A-9142 - CGACGAGGAAGAGGAAGAAGAGG 23 10907
    BCL11A-9143 - ACGACGAGGAAGAGGAAGAAGAGG 24 10908
    BCL11A-9144 - AGGACGACGAGGAAGAGG 18 10909
    BCL11A-9145 - GAGGACGACGAGGAAGAGG 19 10910
    BCL11A-3957 - GGAGGACGACGAGGAAGAGG 20 10911
    BCL11A-9146 - AGGAGGACGACGAGGAAGAGG 21 10912
    BCL11A-9147 - GAGGAGGACGACGAGGAAGAGG 22 10913
    BCL11A-9148 - AGAGGAGGACGACGAGGAAGAGG 23 10914
    BCL11A-9149 - AAGAGGAGGACGACGAGGAAGAGG 24 10915
    BCL11A-9150 - AAGAAGAGGAGGAAGAGG 18 10916
    BCL11A-9151 - GAAGAAGAGGAGGAAGAGG 19 10917
    BCL11A-3452 - GGAAGAAGAGGAGGAAGAGG 20 10918
    BCL11A-9152 - AGGAAGAAGAGGAGGAAGAGG 21 10919
    BCL11A-9153 - GAGGAAGAAGAGGAGGAAGAGG 22 10920
    BCL11A-9154 - AGAGGAAGAAGAGGAGGAAGAGG 23 10921
    BCL11A-9155 - AAGAGGAAGAAGAGGAGGAAGAGG 24 10922
    BCL11A-9156 - CUGACGGAGAGCGAGAGG 18 10923
    BCL11A-9157 - GCUGACGGAGAGCGAGAGG 19 10924
    BCL11A-9158 - AGCUGACGGAGAGCGAGAGG 20 10925
    BCL11A-9159 - GAGCUGACGGAGAGCGAGAGG 21 10926
    BCL11A-9160 - GGAGCUGACGGAGAGCGAGAGG 22 10927
    BCL11A-9161 - AGGAGCUGACGGAGAGCGAGAGG 23 10928
    BCL11A-9162 - GAGGAGCUGACGGAGAGCGAGAGG 24 10929
    BCL11A-9163 - AAGAGGAGGACGACGAGG 18 10930
    BCL11A-9164 - GAAGAGGAGGACGACGAGG 19 10931
    BCL11A-3960 - GGAAGAGGAGGACGACGAGG 20 10932
    BCL11A-9165 - AGGAAGAGGAGGACGACGAGG 21 10933
    BCL11A-9166 - GAGGAAGAGGAGGACGACGAGG 22 10934
    BCL11A-9167 - GGAGGAAGAGGAGGACGACGAGG 23 10935
    BCL11A-9168 - AGGAGGAAGAGGAGGACGACGAGG 24 10936
    BCL11A-9169 - CGGAGAACGGGGACGAGG 18 10937
    BCL11A-9170 - CCGGAGAACGGGGACGAGG 19 10938
    BCL11A-3330 - CCCGGAGAACGGGGACGAGG 20 10939
    BCL11A-9171 - UCCCGGAGAACGGGGACGAGG 21 10940
    BCL11A-9172 - AUCCCGGAGAACGGGGACGAGG 22 10941
    BCL11A-9173 - GAUCCCGGAGAACGGGGACGAGG 23 10942
    BCL11A-9174 - UGAUCCCGGAGAACGGGGACGAGG 24 10943
    BCL11A-9175 - GCGGCCACCUGGCCGAGG 18 10944
    BCL11A-9176 - CGCGGCCACCUGGCCGAGG 19 10945
    BCL11A-9177 - GCGCGGCCACCUGGCCGAGG 20 10946
    BCL11A-9178 - AGCGCGGCCACCUGGCCGAGG 21 10947
    BCL11A-9179 - AAGCGCGGCCACCUGGCCGAGG 22 10948
    BCL11A-9180 - UAAGCGCGGCCACCUGGCCGAGG 23 10949
    BCL11A-9181 - AUAAGCGCGGCCACCUGGCCGAGG 24 10950
    BCL11A-9182 - AAGAGGAAGAAGAGGAGG 18 10951
    BCL11A-9183 - GAAGAGGAAGAAGAGGAGG 19 10952
    BCL11A-3963 - GGAAGAGGAAGAAGAGGAGG 20 10953
    BCL11A-9184 - AGGAAGAGGAAGAAGAGGAGG 21 10954
    BCL11A-9185 - GAGGAAGAGGAAGAAGAGGAGG 22 10955
    BCL11A-9186 - CGAGGAAGAGGAAGAAGAGGAGG 23 10956
    BCL11A-9187 - ACGAGGAAGAGGAAGAAGAGGAGG 24 10957
    BCL11A-9188 - AAGAGGAGGAAGAGGAGG 18 10958
    BCL11A-9189 - GAAGAGGAGGAAGAGGAGG 19 10959
    BCL11A-3454 - AGAAGAGGAGGAAGAGGAGG 20 10960
    BCL11A-9190 - AAGAAGAGGAGGAAGAGGAGG 21 10961
    BCL11A-9191 - GAAGAAGAGGAGGAAGAGGAGG 22 10962
    BCL11A-9192 - GGAAGAAGAGGAGGAAGAGGAGG 23 10963
    BCL11A-9193 - AGGAAGAAGAGGAGGAAGAGGAGG 24 10964
    BCL11A-9194 - AGAACGGGGACGAGGAGG 18 10965
    BCL11A-9195 - GAGAACGGGGACGAGGAGG 19 10966
    BCL11A-3918 - GGAGAACGGGGACGAGGAGG 20 10967
    BCL11A-9196 - CGGAGAACGGGGACGAGGAGG 21 10968
    BCL11A-9197 - CCGGAGAACGGGGACGAGGAGG 22 10969
    BCL11A-9198 - CCCGGAGAACGGGGACGAGGAGG 23 10970
    BCL11A-9199 - UCCCGGAGAACGGGGACGAGGAGG 24 10971
    BCL11A-9200 - AGGAGGAAGAGGAGGAGG 18 10972
    BCL11A-9201 - GAGGAGGAAGAGGAGGAGG 19 10973
    BCL11A-3455 - AGAGGAGGAAGAGGAGGAGG 20 10974
    BCL11A-9202 - AAGAGGAGGAAGAGGAGGAGG 21 10975
    BCL11A-9203 - GAAGAGGAGGAAGAGGAGGAGG 22 10976
    BCL11A-9204 - AGAAGAGGAGGAAGAGGAGGAGG 23 10977
    BCL11A-9205 - AAGAAGAGGAGGAAGAGGAGGAGG 24 10978
    BCL11A-9206 - ACCGGCGCAGCCACACGG 18 10979
    BCL11A-9207 - CACCGGCGCAGCCACACGG 19 10980
    BCL11A-3764 - GCACCGGCGCAGCCACACGG 20 10981
    BCL11A-9208 - UGCACCGGCGCAGCCACACGG 21 10982
    BCL11A-9209 - GUGCACCGGCGCAGCCACACGG 22 10983
    BCL11A-9210 - GGUGCACCGGCGCAGCCACACGG 23 10984
    BCL11A-9211 - UGGUGCACCGGCGCAGCCACACGG 24 10985
    BCL11A-9212 - UAGAGCGCCUGGGGGCGG 18 10986
    BCL11A-9213 - AUAGAGCGCCUGGGGGCGG 19 10987
    BCL11A-9214 - CAUAGAGCGCCUGGGGGCGG 20 10988
    BCL11A-9215 - GCAUAGAGCGCCUGGGGGCGG 21 10989
    BCL11A-9216 - CGCAUAGAGCGCCUGGGGGCGG 22 10990
    BCL11A-9217 - CCGCAUAGAGCGCCUGGGGGCGG 23 10991
    BCL11A-9218 - ACCGCAUAGAGCGCCUGGGGGCGG 24 10992
    BCL11A-9219 - AUGUGUGGCAGUUUUCGG 18 10993
    BCL11A-9220 - GAUGUGUGGCAGUUUUCGG 19 10994
    BCL11A-9221 - AGAUGUGUGGCAGUUUUCGG 20 10995
    BCL11A-9222 - AAGAUGUGUGGCAGUUUUCGG 21 10996
    BCL11A-9223 - CAAGAUGUGUGGCAGUUUUCGG 22 10997
    BCL11A-9224 - UCAAGAUGUGUGGCAGUUUUCGG 23 10998
    BCL11A-9225 - CUCAAGAUGUGUGGCAGUUUUCGG 24 10999
    BCL11A-9226 - AAUUUGAAGCCCCCAGGG 18 11000
    BCL11A-9227 - AAAUUUGAAGCCCCCAGGG 19 11001
    BCL11A-9228 - AAAAUUUGAAGCCCCCAGGG 20 11002
    BCL11A-9229 - GAAAAUUUGAAGCCCCCAGGG 21 11003
    BCL11A-9230 - AGAAAAUUUGAAGCCCCCAGGG 22 11004
    BCL11A-9231 - GAGAAAAUUUGAAGCCCCCAGGG 23 11005
    BCL11A-9232 - UGAGAAAAUUUGAAGCCCCCAGGG 24 11006
    BCL11A-9233 - GUGGACUACGGCUUCGGG 18 11007
    BCL11A-9234 - GGUGGACUACGGCUUCGGG 19 11008
    BCL11A-9235 - GGGUGGACUACGGCUUCGGG 20 11009
    BCL11A-9236 - AGGGUGGACUACGGCUUCGGG 21 11010
    BCL11A-9237 - GAGGGUGGACUACGGCUUCGGG 22 11011
    BCL11A-9238 - AGAGGGUGGACUACGGCUUCGGG 23 11012
    BCL11A-9239 - GAGAGGGUGGACUACGGCUUCGGG 24 11013
    BCL11A-9240 - UGAUCCCGGAGAACGGGG 18 11014
    BCL11A-9241 - CUGAUCCCGGAGAACGGGG 19 11015
    BCL11A-9242 - CCUGAUCCCGGAGAACGGGG 20 11016
    BCL11A-9243 - ACCUGAUCCCGGAGAACGGGG 21 11017
    BCL11A-9244 - AACCUGAUCCCGGAGAACGGGG 22 11018
    BCL11A-9245 - CAACCUGAUCCCGGAGAACGGGG 23 11019
    BCL11A-9246 - CCAACCUGAUCCCGGAGAACGGGG 24 11020
    BCL11A-9247 - GCAUAGAGCGCCUGGGGG 18 11021
    BCL11A-9248 - CGCAUAGAGCGCCUGGGGG 19 11022
    BCL11A-6143 - CCGCAUAGAGCGCCUGGGGG 20 11023
    BCL11A-9249 - ACCGCAUAGAGCGCCUGGGGG 21 11024
    BCL11A-9250 - CACCGCAUAGAGCGCCUGGGGG 22 11025
    BCL11A-9251 - CCACCGCAUAGAGCGCCUGGGGG 23 11026
    BCL11A-9252 - CCCACCGCAUAGAGCGCCUGGGGG 24 11027
    BCL11A-9253 - CGCAUAGAGCGCCUGGGG 18 11028
    BCL11A-9254 - CCGCAUAGAGCGCCUGGGG 19 11029
    BCL11A-9255 - ACCGCAUAGAGCGCCUGGGG 20 11030
    BCL11A-9256 - CACCGCAUAGAGCGCCUGGGG 21 11031
    BCL11A-9257 - CCACCGCAUAGAGCGCCUGGGG 22 11032
    BCL11A-9258 - CCCACCGCAUAGAGCGCCUGGGG 23 11033
    BCL11A-9259 - CCCCACCGCAUAGAGCGCCUGGGG 24 11034
    BCL11A-9260 - AUAAGCGCGGCCACCUGG 18 11035
    BCL11A-9261 - CAUAAGCGCGGCCACCUGG 19 11036
    BCL11A-9262 - GCAUAAGCGCGGCCACCUGG 20 11037
    BCL11A-9263 - AGCAUAAGCGCGGCCACCUGG 21 11038
    BCL11A-9264 - AAGCAUAAGCGCGGCCACCUGG 22 11039
    BCL11A-9265 - GAAGCAUAAGCGCGGCCACCUGG 23 11040
    BCL11A-9266 - AGAAGCAUAAGCGCGGCCACCUGG 24 11041
    BCL11A-9267 - GAGAGGCUUCCGGCCUGG 18 11042
    BCL11A-9268 - AGAGAGGCUUCCGGCCUGG 19 11043
    BCL11A-9269 - GAGAGAGGCUUCCGGCCUGG 20 11044
    BCL11A-9270 - CGAGAGAGGCUUCCGGCCUGG 21 11045
    BCL11A-9271 - UCGAGAGAGGCUUCCGGCCUGG 22 11046
    BCL11A-9272 - AUCGAGAGAGGCUUCCGGCCUGG 23 11047
    BCL11A-9273 - UAUCGAGAGAGGCUUCCGGCCUGG 24 11048
    BCL11A-9274 - CCUUCCACCAGGUCCUGG 18 11049
    BCL11A-9275 - GCCUUCCACCAGGUCCUGG 19 11050
    BCL11A-9276 - GGCCUUCCACCAGGUCCUGG 20 11051
    BCL11A-9277 - AGGCCUUCCACCAGGUCCUGG 21 11052
    BCL11A-9278 - GAGGCCUUCCACCAGGUCCUGG 22 11053
    BCL11A-9279 - CGAGGCCUUCCACCAGGUCCUGG 23 11054
    BCL11A-9280 - GCGAGGCCUUCCACCAGGUCCUGG 24 11055
    BCL11A-9281 - GGAGACUUAGAGAGCUGG 18 11056
    BCL11A-9282 - AGGAGACUUAGAGAGCUGG 19 11057
    BCL11A-9283 - UAGGAGACUUAGAGAGCUGG 20 11058
    BCL11A-9284 - CUAGGAGACUUAGAGAGCUGG 21 11059
    BCL11A-9285 - UCUAGGAGACUUAGAGAGCUGG 22 11060
    BCL11A-9286 - CUCUAGGAGACUUAGAGAGCUGG 23 11061
    BCL11A-9287 - UCUCUAGGAGACUUAGAGAGCUGG 24 11062
    BCL11A-9288 - CACCGCCCGGGGAGCUGG 18 11063
    BCL11A-9289 - ACACCGCCCGGGGAGCUGG 19 11064
    BCL11A-9290 - CACACCGCCCGGGGAGCUGG 20 11065
    BCL11A-9291 - CCACACCGCCCGGGGAGCUGG 21 11066
    BCL11A-9292 - UCCACACCGCCCGGGGAGCUGG 22 11067
    BCL11A-9293 - CUCCACACCGCCCGGGGAGCUGG 23 11068
    BCL11A-9294 - UCUCCACACCGCCCGGGGAGCUGG 24 11069
    BCL11A-9295 - CAGCGGCACGGGAAGUGG 18 11070
    BCL11A-9296 - GCAGCGGCACGGGAAGUGG 19 11071
    BCL11A-6157 - CGCAGCGGCACGGGAAGUGG 20 11072
    BCL11A-9297 - GCGCAGCGGCACGGGAAGUGG 21 11073
    BCL11A-9298 - GGCGCAGCGGCACGGGAAGUGG 22 11074
    BCL11A-9299 - GGGCGCAGCGGCACGGGAAGUGG 23 11075
    BCL11A-9300 - GGGGCGCAGCGGCACGGGAAGUGG 24 11076
    BCL11A-9301 - GCCCUGCCCGACGUCAUG 18 11077
    BCL11A-9302 - CGCCCUGCCCGACGUCAUG 19 11078
    BCL11A-9303 - GCGCCCUGCCCGACGUCAUG 20 11079
    BCL11A-9304 - CGCGCCCUGCCCGACGUCAUG 21 11080
    BCL11A-9305 - CCGCGCCCUGCCCGACGUCAUG 22 11081
    BCL11A-9306 - GCCGCGCCCUGCCCGACGUCAUG 23 11082
    BCL11A-9307 - AGCCGCGCCCUGCCCGACGUCAUG 24 11083
    BCL11A-9308 - CGACACUUGUGAGUACUG 18 11084
    BCL11A-9309 - GCGACACUUGUGAGUACUG 19 11085
    BCL11A-6169 - AGCGACACUUGUGAGUACUG 20 11086
    BCL11A-9310 - CAGCGACACUUGUGAGUACUG 21 11087
    BCL11A-9311 - GCAGCGACACUUGUGAGUACUG 22 11088
    BCL11A-9312 - CGCAGCGACACUUGUGAGUACUG 23 11089
    BCL11A-9313 - ACGCAGCGACACUUGUGAGUACUG 24 11090
    BCL11A-9314 - GAGGAGGAGGAGGAGCUG 18 11091
    BCL11A-9315 - AGAGGAGGAGGAGGAGCUG 19 11092
    BCL11A-9316 - AAGAGGAGGAGGAGGAGCUG 20 11093
    BCL11A-9317 - GAAGAGGAGGAGGAGGAGCUG 21 11094
    BCL11A-9318 - GGAAGAGGAGGAGGAGGAGCUG 22 11095
    BCL11A-9319 - AGGAAGAGGAGGAGGAGGAGCUG 23 11096
    BCL11A-9320 - GAGGAAGAGGAGGAGGAGGAGCUG 24 11097
    BCL11A-9321 - CUGUCCAAAAAGCUGCUG 18 11098
    BCL11A-9322 - CCUGUCCAAAAAGCUGCUG 19 11099
    BCL11A-9323 - GCCUGUCCAAAAAGCUGCUG 20 11100
    BCL11A-9324 - GGCCUGUCCAAAAAGCUGCUG 21 11101
    BCL11A-9325 - GGGCCUGUCCAAAAAGCUGCUG 22 11102
    BCL11A-9326 - GGGGCCUGUCCAAAAAGCUGCUG 23 11103
    BCL11A-9327 - GGGGGCCUGUCCAAAAAGCUGCUG 24 11104
    BCL11A-9328 - GCAGCGGCACGGGAAGUG 18 11105
    BCL11A-9329 - CGCAGCGGCACGGGAAGUG 19 11106
    BCL11A-9330 - GCGCAGCGGCACGGGAAGUG 20 11107
    BCL11A-9331 - GGCGCAGCGGCACGGGAAGUG 21 11108
    BCL11A-9332 - GGGCGCAGCGGCACGGGAAGUG 22 11109
    BCL11A-9333 - GGGGCGCAGCGGCACGGGAAGUG 23 11110
    BCL11A-9334 - CGGGGCGCAGCGGCACGGGAAGUG 24 11111
    BCL11A-9335 - CCCGGCACCAGCGACUUG 18 11112
    BCL11A-9336 - ACCCGGCACCAGCGACUUG 19 11113
    BCL11A-9337 - AACCCGGCACCAGCGACUUG 20 11114
    BCL11A-9338 - GAACCCGGCACCAGCGACUUG 21 11115
    BCL11A-9339 - GGAACCCGGCACCAGCGACUUG 22 11116
    BCL11A-9340 - CGGAACCCGGCACCAGCGACUUG 23 11117
    BCL11A-9341 - CCGGAACCCGGCACCAGCGACUUG 24 11118
    BCL11A-9342 - CUUAAGUUCUGAGAAAAU 18 11119
    BCL11A-9343 - CCUUAAGUUCUGAGAAAAU 19 11120
    BCL11A-9344 - CCCUUAAGUUCUGAGAAAAU 20 11121
    BCL11A-9345 - GCCCUUAAGUUCUGAGAAAAU 21 11122
    BCL11A-9346 - AGCCCUUAAGUUCUGAGAAAAU 22 11123
    BCL11A-9347 - GAGCCCUUAAGUUCUGAGAAAAU 23 11124
    BCL11A-9348 - AGAGCCCUUAAGUUCUGAGAAAAU 24 11125
    BCL11A-9349 - GGAUUUCUCUAGGAGACU 18 11126
    BCL11A-9350 - UGGAUUUCUCUAGGAGACU 19 11127
    BCL11A-9351 - AUGGAUUUCUCUAGGAGACU 20 11128
    BCL11A-9352 - CAUGGAUUUCUCUAGGAGACU 21 11129
    BCL11A-9353 - CCAUGGAUUUCUCUAGGAGACU 22 11130
    BCL11A-9354 - GCCAUGGAUUUCUCUAGGAGACU 23 11131
    BCL11A-9355 - CGCCAUGGAUUUCUCUAGGAGACU 24 11132
    BCL11A-9356 - AUGGAUUAAGAAUCUACU 18 11133
    BCL11A-9357 - CAUGGAUUAAGAAUCUACU 19 11134
    BCL11A-9358 - UCAUGGAUUAAGAAUCUACU 20 11135
    BCL11A-9359 - CUCAUGGAUUAAGAAUCUACU 21 11136
    BCL11A-9360 - ACUCAUGGAUUAAGAAUCUACU 22 11137
    BCL11A-9361 - CACUCAUGGAUUAAGAAUCUACU 23 11138
    BCL11A-9362 - ACACUCAUGGAUUAAGAAUCUACU 24 11139
    BCL11A-9363 - GCGACACUUGUGAGUACU 18 11140
    BCL11A-9364 - AGCGACACUUGUGAGUACU 19 11141
    BCL11A-9365 - CAGCGACACUUGUGAGUACU 20 11142
    BCL11A-9366 - GCAGCGACACUUGUGAGUACU 21 11143
    BCL11A-9367 - CGCAGCGACACUUGUGAGUACU 22 11144
    BCL11A-9368 - ACGCAGCGACACUUGUGAGUACU 23 11145
    BCL11A-9369 - GACGCAGCGACACUUGUGAGUACU 24 11146
    BCL11A-9370 - CCACCGCAUAGAGCGCCU 18 11147
    BCL11A-9371 - CCCACCGCAUAGAGCGCCU 19 11148
    BCL11A-6197 - CCCCACCGCAUAGAGCGCCU 20 11149
    BCL11A-9372 - CCCCCACCGCAUAGAGCGCCU 21 11150
    BCL11A-9373 - ACCCCCACCGCAUAGAGCGCCU 22 11151
    BCL11A-9374 - GACCCCCACCGCAUAGAGCGCCU 23 11152
    BCL11A-9375 - GGACCCCCACCGCAUAGAGCGCCU 24 11153
    BCL11A-9376 - CCCCGGGCGAGUCGGCCU 18 11154
    BCL11A-9377 - UCCCCGGGCGAGUCGGCCU 19 11155
    BCL11A-6200 - CUCCCCGGGCGAGUCGGCCU 20 11156
    BCL11A-9378 - GCUCCCCGGGCGAGUCGGCCU 21 11157
    BCL11A-9379 - UGCUCCCCGGGCGAGUCGGCCU 22 11158
    BCL11A-9380 - CUGCUCCCCGGGCGAGUCGGCCU 23 11159
    BCL11A-9381 - GCUGCUCCCCGGGCGAGUCGGCCU 24 11160
    BCL11A-9382 - CCUCGUCGGAGCACUCCU 18 11161
    BCL11A-9383 - UCCUCGUCGGAGCACUCCU 19 11162
    BCL11A-6202 - CUCCUCGUCGGAGCACUCCU 20 11163
    BCL11A-9384 - CCUCCUCGUCGGAGCACUCCU 21 11164
    BCL11A-9385 - GCCUCCUCGUCGGAGCACUCCU 22 11165
    BCL11A-9386 - UGCCUCCUCGUCGGAGCACUCCU 23 11166
    BCL11A-9387 - UUGCCUCCUCGUCGGAGCACUCCU 24 11167
    BCL11A-9388 - AAGAUCCCUUCCUUAGCU 18 11168
    BCL11A-9389 - AAAGAUCCCUUCCUUAGCU 19 11169
    BCL11A-9390 - CAAAGAUCCCUUCCUUAGCU 20 11170
    BCL11A-9391 - UCAAAGAUCCCUUCCUUAGCU 21 11171
    BCL11A-9392 - CUCAAAGAUCCCUUCCUUAGCU 22 11172
    BCL11A-9393 - GCUCAAAGAUCCCUUCCUUAGCU 23 11173
    BCL11A-9394 - AGCUCAAAGAUCCCUUCCUUAGCU 24 11174
    BCL11A-9395 - AGAGGGUGGACUACGGCU 18 11175
    BCL11A-9396 - GAGAGGGUGGACUACGGCU 19 11176
    BCL11A-9397 - CGAGAGGGUGGACUACGGCU 20 11177
    BCL11A-9398 - GCGAGAGGGUGGACUACGGCU 21 11178
    BCL11A-9399 - AGCGAGAGGGUGGACUACGGCU 22 11179
    BCL11A-9400 - GAGCGAGAGGGUGGACUACGGCU 23 11180
    BCL11A-9401 - AGAGCGAGAGGGUGGACUACGGCU 24 11181
    BCL11A-9402 - CGGUUGAAUCCAAUGGCU 18 11182
    BCL11A-9403 - GCGGUUGAAUCCAAUGGCU 19 11183
    BCL11A-9404 - UGCGGUUGAAUCCAAUGGCU 20 11184
    BCL11A-9405 - CUGCGGUUGAAUCCAAUGGCU 21 11185
    BCL11A-9406 - GCUGCGGUUGAAUCCAAUGGCU 22 11186
    BCL11A-9407 - UGCUGCGGUUGAAUCCAAUGGCU 23 11187
    BCL11A-9408 - GUGCUGCGGUUGAAUCCAAUGGCU 24 11188
    BCL11A-9409 - AGCUGGACGGAGGGAUCU 18 11189
    BCL11A-9410 - GAGCUGGACGGAGGGAUCU 19 11190
    BCL11A-6210 - GGAGCUGGACGGAGGGAUCU 20 11191
    BCL11A-9411 - GGGAGCUGGACGGAGGGAUCU 21 11192
    BCL11A-9412 - GGGGAGCUGGACGGAGGGAUCU 22 11193
    BCL11A-9413 - CGGGGAGCUGGACGGAGGGAUCU 23 11194
    BCL11A-9414 - CCGGGGAGCUGGACGGAGGGAUCU 24 11195
    BCL11A-9415 - CCCGCCAUGGAUUUCUCU 18 11196
    BCL11A-9416 - UCCCGCCAUGGAUUUCUCU 19 11197
    BCL11A-6212 - CUCCCGCCAUGGAUUUCUCU 20 11198
    BCL11A-9417 - CCUCCCGCCAUGGAUUUCUCU 21 11199
    BCL11A-9418 - GCCUCCCGCCAUGGAUUUCUCU 22 11200
    BCL11A-9419 - AGCCUCCCGCCAUGGAUUUCUCU 23 11201
    BCL11A-9420 - GAGCCUCCCGCCAUGGAUUUCUCU 24 11202
    BCL11A-9421 - CGAGAGCCCUUAAGUUCU 18 11203
    BCL11A-9422 - UCGAGAGCCCUUAAGUUCU 19 11204
    BCL11A-9423 - CUCGAGAGCCCUUAAGUUCU 20 11205
    BCL11A-9424 - GCUCGAGAGCCCUUAAGUUCU 21 11206
    BCL11A-9425 - AGCUCGAGAGCCCUUAAGUUCU 22 11207
    BCL11A-9426 - AAGCUCGAGAGCCCUUAAGUUCU 23 11208
    BCL11A-9427 - GAAGCUCGAGAGCCCUUAAGUUCU 24 11209
    BCL11A-9428 - CGCCUUUUGCCUCCUCGU 18 11210
    BCL11A-9429 - UCGCCUUUUGCCUCCUCGU 19 11211
    BCL11A-6220 - AUCGCCUUUUGCCUCCUCGU 20 11212
    BCL11A-9430 - AAUCGCCUUUUGCCUCCUCGU 21 11213
    BCL11A-9431 - CAAUCGCCUUUUGCCUCCUCGU 22 11214
    BCL11A-9432 - ACAAUCGCCUUUUGCCUCCUCGU 23 11215
    BCL11A-9433 - GACAAUCGCCUUUUGCCUCCUCGU 24 11216
    BCL11A-9434 - ACGCCCCAUAUUAGUGGU 18 11217
    BCL11A-9435 - CACGCCCCAUAUUAGUGGU 19 11218
    BCL11A-9436 - GCACGCCCCAUAUUAGUGGU 20 11219
    BCL11A-9437 - AGCACGCCCCAUAUUAGUGGU 21 11220
    BCL11A-9438 - GAGCACGCCCCAUAUUAGUGGU 22 11221
    BCL11A-9439 - GGAGCACGCCCCAUAUUAGUGGU 23 11222
    BCL11A-9440 - GGGAGCACGCCCCAUAUUAGUGGU 24 11223
    BCL11A-9441 - GACACUUGUGAGUACUGU 18 11224
    BCL11A-9442 - CGACACUUGUGAGUACUGU 19 11225
    BCL11A-6230 - GCGACACUUGUGAGUACUGU 20 11226
    BCL11A-9443 - AGCGACACUUGUGAGUACUGU 21 11227
    BCL11A-9444 - CAGCGACACUUGUGAGUACUGU 22 11228
    BCL11A-9445 - GCAGCGACACUUGUGAGUACUGU 23 11229
    BCL11A-9446 - CGCAGCGACACUUGUGAGUACUGU 24 11230
    BCL11A-9447 - CGCGGGUUGGUAUCCCUU 18 11231
    BCL11A-9448 - CCGCGGGUUGGUAUCCCUU 19 11232
    BCL11A-9449 - CCCGCGGGUUGGUAUCCCUU 20 11233
    BCL11A-9450 - CCCCGCGGGUUGGUAUCCCUU 21 11234
    BCL11A-9451 - ACCCCGCGGGUUGGUAUCCCUU 22 11235
    BCL11A-9452 - GACCCCGCGGGUUGGUAUCCCUU 23 11236
    BCL11A-9453 - UGACCCCGCGGGUUGGUAUCCCUU 24 11237
    BCL11A-9454 - AGAUCCCUUCCUUAGCUU 18 11238
    BCL11A-9455 - AAGAUCCCUUCCUUAGCUU 19 11239
    BCL11A-6234 - AAAGAUCCCUUCCUUAGCUU 20 11240
    BCL11A-9456 - CAAAGAUCCCUUCCUUAGCUU 21 11241
    BCL11A-9457 - UCAAAGAUCCCUUCCUUAGCUU 22 11242
    BCL11A-9458 - CUCAAAGAUCCCUUCCUUAGCUU 23 11243
    BCL11A-9459 - GCUCAAAGAUCCCUUCCUUAGCUU 24 11244
    BCL11A-9460 - CUCGAGAGCCCUUAAGUU 18 11245
    BCL11A-9461 - GCUCGAGAGCCCUUAAGUU 19 11246
    BCL11A-9462 - AGCUCGAGAGCCCUUAAGUU 20 11247
    BCL11A-9463 - AAGCUCGAGAGCCCUUAAGUU 21 11248
    BCL11A-9464 - GAAGCUCGAGAGCCCUUAAGUU 22 11249
    BCL11A-9465 - GGAAGCUCGAGAGCCCUUAAGUU 23 11250
    BCL11A-9466 - UGGAAGCUCGAGAGCCCUUAAGUU 24 11251
    BCL11A-9467 - GGCAAGACGUUCAAAUUU 18 11252
    BCL11A-9468 - CGGCAAGACGUUCAAAUUU 19 11253
    BCL11A-9469 - GCGGCAAGACGUUCAAAUUU 20 11254
    BCL11A-9470 - UGCGGCAAGACGUUCAAAUUU 21 11255
    BCL11A-9471 - CUGCGGCAAGACGUUCAAAUUU 22 11256
    BCL11A-9472 - UCUGCGGCAAGACGUUCAAAUUU 23 11257
    BCL11A-9473 - UUCUGCGGCAAGACGUUCAAAUUU 24 11258
  • Table 17A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 17A
    1st Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-9474 + CGAUUGGUGAAGGGGAA 17 11259
    BCL11A-9475 + AUUGGAUGCUUUUUUCA 17 11260
    BCL11A-9476 CAGGUCACGCCAGAGGA 17 11261
    BCL11A-9477 + CUUACGCGAGAAUUCCC 17 11262
    BCL11A-9478 + CCUGGAUGCCAACCUCC 17 11263
    BCL11A-9479 AACAAUGCAAUGGCAGC 17 11264
    BCL11A-9480 + GGGGAAGGUGGCUUAUC 17 11265
    BCL11A-9481 + GGUUCAUCAUCUGUAAG 17 11266
    BCL11A-5334 + UGCACUCAUCCCAGGCG 17 11267
    BCL11A-9482 + UUAAGUGCUGGGGUUUG 17 11268
    BCL11A-9483 + CCAACCUCCACGGGAUU 17 11269
    BCL11A-9484 + UCUCGAUUGGUGAAGGGGAA 20 11270
    BCL11A-9485 + GGGAUUGGAUGCUUUUUUCA 20 11271
    BCL11A-9486 AUCCAGGUCACGCCAGAGGA 20 11272
    BCL11A-9487 + UUACUUACGCGAGAAUUCCC 20 11273
    BCL11A-6420 + UGACCUGGAUGCCAACCUCC 20 11274
    BCL11A-9488 GGAAACAAUGCAAUGGCAGC 20 11275
    BCL11A-9489 + GAAGGGGAAGGUGGCUUAUC 20 11276
    BCL11A-9490 + UCUGGUUCAUCAUCUGUAAG 20 11277
    BCL11A-5480 + UUCUGCACUCAUCCCAGGCG 20 11278
    BCL11A-9491 + UGCUUAAGUGCUGGGGUUUG 20 11279
    BCL11A-9492 + AUGCCAACCUCCACGGGAUU 20 11280
  • Table 17B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500 bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 17B
    3rd Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-5515 + UCCGACGAGGAGGCAAA 17 11281
    BCL11A-5520 CUUCCGGCCUGGCAGAA 17 11282
    BCL11A-9493 + UCCGUGUUCGCUUUCUA 17 11283
    BCL11A-9494 AGAGCGAGAGGGUGGAC 17 11284
    BCL11A-9495 + CGGGAGGCUCCAUAGCC 17 11285
    BCL11A-9496 UUCCCAGCCACCUCUCC 17 11286
    BCL11A-9497 + AGCUGGGGCUGCCCAGC 17 11287
    BCL11A-9498 GCUAUGGAGCCUCCCGC 17 11288
    BCL11A-9499 + CGGCCAGGUGGCCGCGC 17 11289
    BCL11A-9500 + GCGUCUUCAUGUGGCGC 17 11290
    BCL11A-9501 + UCAGAACUUAAGGGCUC 17 11291
    BCL11A-9502 AGCUCAAAGAUCCCUUC 17 11292
    BCL11A-9503 + GCAGGUCGAACUCCUUC 17 11293
    BCL11A-9504 + GGGGCGUCGCCAGGAAG 17 11294
    BCL11A-9505 CCAGGAUCAGUAUCGAG 17 11295
    BCL11A-9506 + GGCUGGGAGGGAGGAGG 17 11296
    BCL11A-9507 + GACUUGACCGUCAUGGG 17 11297
    BCL11A-9508 + CGGCCUCGGCCAGGUGG 17 11298
    BCL11A-5799 + GCAUGUGCGUCUUCAUG 17 11299
    BCL11A-9509 + CGCACAGGUUGCACUUG 17 11300
    BCL11A-9510 + ACUCCUUCUCGAGCUUG 17 11301
    BCL11A-9511 AACACGCACAGAACACU 17 11302
    BCL11A-9512 CCUCGGAGAACGGGAGU 17 11303
    BCL11A-9513 + GGUCAGGGGACUUCCGU 17 11304
    BCL11A-5874 + UGCUCCGACGAGGAGGCAAA 20 11305
    BCL11A-5879 AGGCUUCCGGCCUGGCAGAA 20 11306
    BCL11A-9514 + ACUUCCGUGUUCGCUUUCUA 20 11307
    BCL11A-9515 CGGAGAGCGAGAGGGUGGAC 20 11308
    BCL11A-9516 + UGGCGGGAGGCUCCAUAGCC 20 11309
    BCL11A-8754 UCCUUCCCAGCCACCUCUCC 20 11310
    BCL11A-9517 + GCGAGCUGGGGCUGCCCAGC 20 11311
    BCL11A-9518 AUGGCUAUGGAGCCUCCCGC 20 11312
    BCL11A-9519 + CCUCGGCCAGGUGGCCGCGC 20 11313
    BCL11A-9520 + UGUGCGUCUUCAUGUGGCGC 20 11314
    BCL11A-7725 + UUCUCAGAACUUAAGGGCUC 20 11315
    BCL11A-9521 GGCAGCUCAAAGAUCCCUUC 20 11316
    BCL11A-7752 + GGGGCAGGUCGAACUCCUUC 20 11317
    BCL11A-9522 + GGGGGGGCGUCGCCAGGAAG 20 11318
    BCL11A-9523 AUACCAGGAUCAGUAUCGAG 20 11319
    BCL11A-9524 + GGGGGCUGGGAGGGAGGAGG 20 11320
    BCL11A-9525 + UCGGACUUGACCGUCAUGGG 20 11321
    BCL11A-9526 + CCUCGGCCUCGGCCAGGUGG 20 11322
    BCL11A-6165 + UGUGCAUGUGCGUCUUCAUG 20 11323
    BCL11A-8204 + GGUCGCACAGGUUGCACUUG 20 11324
    BCL11A-9527 + CGAACUCCUUCUCGAGCUUG 20 11325
    BCL11A-9528 UGCAACACGCACAGAACACU 20 11326
    BCL11A-9529 ACUCCUCGGAGAACGGGAGU 20 11327
    BCL11A-9530 + CGGGGUCAGGGGACUUCCGU 20 11328
  • Table 18A provides exemplary targeting domains for knocking down the BCL11A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 18A
    1st Tier
    Target SEQ
    DNA Site ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-9531 + AAGUGCAUACACGGCAA 17 11329
    BCL11A-5319 + UUGCUUGCGGCGAGACA 17 11330
    BCL11A-5320 AUGUCUCGCCGCAAGCA 17 11331
    BCL11A-9532 UGACGUUCAAGUUCGCA 17 11332
    BCL11A-9533 + UUGUGGGAGAGCCGUCA 17 11333
    BCL11A-9534 + ACGGCAAUGGUUCCAGA 17 11334
    BCL11A-9535 GCGCUCGCUGCGGCCAC 17 11335
    BCL11A-4560 + ACGCCAGACGCGGCCCC 17 11336
    BCL11A-9536 + UUCACAUCGGGAGAGCC 17 11337
    BCL11A-9537 + GUUCACAUCGGGAGAGC 17 11338
    BCL11A-9538 UAAUCACGAGAGCGCGC 17 11339
    BCL11A-9539 CUGACGUUCAAGUUCGC 17 11340
    BCL11A-5327 + CCCGUUUGCUUAAGUGC 17 11341
    BCL11A-9540 + ACGGCUCGGUUCACAUC 17 11342
    BCL11A-9541 + CUUGAACGUCAGGAGUC 17 11343
    BCL11A-9542 + CUGCGAACUUGAACGUC 17 11344
    BCL11A-9543 CCCCCGGGGGCCGCGUC 17 11345
    BCL11A-9544 + UCCGCGGACGCCAGACG 17 11346
    BCL11A-9545 GACUAGAAGCAAAAGCG 17 11347
    BCL11A-5335 + AGACAUGGUGGGCUGCG 17 11348
    BCL11A-9546 AAAACCUCCGAGAGUCG 17 11349
    BCL11A-9547 + UUUACCUCGACUCUCGG 17 11350
    BCL11A-9548 AGUCCGCGUGUGUGGGG 17 11351
    BCL11A-5336 + CGUUUGCUUAAGUGCUG 17 11352
    BCL11A-9549 UAGAGUCCGCGUGUGUG 17 11353
    BCL11A-9550 + GACGGCUCGGUUCACAU 17 11354
    BCL11A-9551 CUCCCCGCACUGGCCAU 17 11355
    BCL11A-9552 + CGGCAAUGGUUCCAGAU 17 11356
    BCL11A-9553 + GCGGGCGGACGACGGCU 17 11357
    BCL11A-5338 + CCGUUUGCUUAAGUGCU 17 11358
    BCL11A-5340 + UUGCGGCGAGACAUGGU 17 11359
    BCL11A-9554 + CGUGGCCGGGAGAGAAGAAA 20 11360
    BCL11A-5345 + GCCUUGCUUGCGGCGAGACA 20 11361
    BCL11A-5346 ACCAUGUCUCGCCGCAAGCA 20 11362
    BCL11A-9555 UCCUGACGUUCAAGUUCGCA 20 11363
    BCL11A-9556 + ACACCAAUGGACACACAUCA 20 11364
    BCL11A-9557 + UACACGGCAAUGGUUCCAGA 20 11365
    BCL11A-9558 + GCCAAUGGCCAGUGCGGGGA 20 11366
    BCL11A-9559 + AAUGGUUCCAGAUGGGAUGA 20 11367
    BCL11A-9560 GAGUCUCCUUCUUUCUAACC 20 11368
    BCL11A-9561 + CGGUUCACAUCGGGAGAGCC 20 11369
    BCL11A-9562 + UCGGUUCACAUCGGGAGAGC 20 11370
    BCL11A-9563 CCGCGUGUGUGGGGGGGAGC 20 11371
    BCL11A-9564 UAAUAAUCACGAGAGCGCGC 20 11372
    BCL11A-9565 + AAAUAAUACAAAGAUGGCGC 20 11373
    BCL11A-9566 CUCCUGACGUUCAAGUUCGC 20 11374
    BCL11A-9567 + GAGACACACAAAACAUGGGC 20 11375
    BCL11A-5352 + AUUCCCGUUUGCUUAAGUGC 20 11376
    BCL11A-9568 + ACGACGGCUCGGUUCACAUC 20 11377
    BCL11A-9569 CGCACUUGAACUUGCAGCUC 20 11378
    BCL11A-9570 + UCCCUGCGAACUUGAACGUC 20 11379
    BCL11A-9571 UCGAGGUAAAAGAGAUAAAG 20 11380
    BCL11A-9572 + CCAAUGGCCAGUGCGGGGAG 20 11381
    BCL11A-4351 + GACGCCAGACGCGGCCCCCG 20 11382
    BCL11A-9573 UGCGGCCACUGGUGAGCCCG 20 11383
    BCL11A-9574 GGGGCCGCGUCUGGCGUCCG 20 11384
    BCL11A-5359 + GCGAGACAUGGUGGGCUGCG 20 11385
    BCL11A-9575 AGAAAAACCUCCGAGAGUCG 20 11386
    BCL11A-4561 + ACGCCAGACGCGGCCCCCGG 20 11387
    BCL11A-9576 + UCUUUUACCUCGACUCUCGG 20 11388
    BCL11A-9577 UAGAGUCCGCGUGUGUGGGG 20 11389
    BCL11A-9578 UUUAGAGUCCGCGUGUGUGG 20 11390
    BCL11A-9579 + CAAUGGUUCCAGAUGGGAUG 20 11391
    BCL11A-5361 + CGGCGAGACAUGGUGGGCUG 20 11392
    BCL11A-9580 + CUGAGCUGCAAGUUCAAGUG 20 11393
    BCL11A-9581 CAUUUUAGAGUCCGCGUGUG 20 11394
    BCL11A-9582 + GACGACGGCUCGGUUCACAU 20 11395
    BCL11A-9583 AGCCCCUGAUGUGUGUCCAU 20 11396
    BCL11A-9584 + GCGGCGGGCGGACGACGGCU 20 11397
    BCL11A-9585 + AUCUCUUUUACCUCGACUCU 20 11398
    BCL11A-5365 + UGCUUGCGGCGAGACAUGGU 20 11399
    BCL11A-9586 AUUUUAGAGUCCGCGUGUGU 20 11400
  • Table 18B provides exemplary targeting domains for knocking down the BCL11A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 18B
    2nd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-9587 + GAGAGAGAUGAAAAAAA 17 11401
    BCL11A-5369 - CCCAGCACUUAAGCAAA 17 11402
    BCL11A-9588 - UUAUUUUGGAUGUCAAA 17 11403
    BCL11A-4473 + GGCCGGGAGAGAAGAAA 17 11404
    BCL11A-9589 + GCAGGGGUGGGAGGAAA 17 11405
    BCL11A-9590 - GAGGUAAAAGAGAUAAA 17 11406
    BCL11A-9591 + AAUUAAAUAAAAUUAAA 17 11407
    BCL11A-9592 + GGGGAAGCUCACACCAA 17 11408
    BCL11A-4574 + AGACCAGGACAAGCCAA 17 11409
    BCL11A-9593 + UGGCCGGGAGAGAAGAA 17 11410
    BCL11A-4491 + GGGCGAGCAGGAGAGAA 17 11411
    BCL11A-9594 + GGCAGGGGUGGGAGGAA 17 11412
    BCL11A-4570 + AGAAGGGGAGGAGGGAA 17 11413
    BCL11A-9595 - CGAGGUAAAAGAGAUAA 17 11414
    BCL11A-4625 + CAGAGACACACAAAACA 17 11415
    BCL11A-9596 + UCUCAAAAGUGCAUACA 17 11416
    BCL11A-9597 - GUGUGUGGGGGGGAGCA 17 11417
    BCL11A-9598 + AAUACAAAGAUGGCGCA 17 11418
    BCL11A-9599 + CACACAAAACAUGGGCA 17 11419
    BCL11A-9600 + AGAAGAAAGGGGUGGCA 17 11420
    BCL11A-9601 + CCAAUGGACACACAUCA 17 11421
    BCL11A-9602 - CUUGAACUUGCAGCUCA 17 11422
    BCL11A-4529 + AAAAAAAAAAAAAAAGA 17 11423
    BCL11A-9603 + UAGAAAUAAUACAAAGA 17 11424
    BCL11A-9604 + GAGCCGGGUUAGAAAGA 17 11425
    BCL11A-4592 + AGGGCGAGCAGGAGAGA 17 11426
    BCL11A-4534 - AAAGCGAGGGGGAGAGA 17 11427
    BCL11A-9605 + GAGAGAAGAGAGAUAGA 17 11428
    BCL11A-4674 + CGGCGGCGGGCGGACGA 17 11429
    BCL11A-4494 + GGGGAGGGGCGGGCCGA 17 11430
    BCL11A-9606 - ACUAGAAGCAAAAGCGA 17 11431
    BCL11A-4591 + AGGAGAGAAGGGGAGGA 17 11432
    BCL11A-4399 + GAGAAGGGGAGGAGGGA 17 11433
    BCL11A-4499 + GGGGCGGGCCGAGGGGA 17 11434
    BCL11A-9607 + AAUGGCCAGUGCGGGGA 17 11435
    BCL11A-4562 + ACGCGGCCCCCGGGGGA 17 11436
    BCL11A-9608 + AACGUCAGGAGUCUGGA 17 11437
    BCL11A-9609 - UUAAAAAAAAGCCAUGA 17 11438
    BCL11A-9610 + GGUUCCAGAUGGGAUGA 17 11439
    BCL11A-5383 - CCAGCACUUAAGCAAAC 17 11440
    BCL11A-9611 - CCUCCCCCUCCCCGCAC 17 11441
    BCL11A-9612 - UCUCCUUCUUUCUAACC 17 11442
    BCL11A-9613 + GACAUGAAAAAGAGACC 17 11443
    BCL11A-4662 + CGCCAGACGCGGCCCCC 17 11444
    BCL11A-9614 - CGGCCCGCCCCUCCCCC 17 11445
    BCL11A-9615 - UCGGCCCGCCCCUCCCC 17 11446
    BCL11A-9616 + GCGGCGGUGGCGUGGCC 17 11447
    BCL11A-9617 - ACCCCUUUCUUCUCUCC 17 11448
    BCL11A-9618 - UGGCCAUUGGCUUGUCC 17 11449
    BCL11A-9619 + ACAUGGGCAGGGCGAGC 17 11450
    BCL11A-9620 - CGUGUGUGGGGGGGAGC 17 11451
    BCL11A-9621 + GGGGGCGCUGGGGCCGC 17 11452
    BCL11A-4646 + CCGAGGGGAGGGGGCGC 17 11453
    BCL11A-9622 + UAAUACAAAGAUGGCGC 17 11454
    BCL11A-4441 + GCGGCGGCGGCGGCGGC 17 11455
    BCL11A-9623 + GGACACACAUCAGGGGC 17 11456
    BCL11A-4429 + GCCCCCGGGGGAGGGGC 17 11457
    BCL11A-5392 + AUGGUGGGCUGCGGGGC 17 11458
    BCL11A-9624 + AGGGGGAGGUGCGGGGC 17 11459
    BCL11A-9625 + ACACACAAAACAUGGGC 17 11460
    BCL11A-9626 + CGCGGCGGUGGCGUGGC 17 11461
    BCL11A-9627 + GAGAAGAAAGGGGUGGC 17 11462
    BCL11A-5395 + GAGACAUGGUGGGCUGC 17 11463
    BCL11A-9628 + AAGCCAAUGGCCAGUGC 17 11464
    BCL11A-9629 + CGGGGAGGGGGAGGUGC 17 11465
    BCL11A-9630 + ACCAAUGGACACACAUC 17 11466
    BCL11A-9631 - AAAACCCUCAUCCCAUC 17 11467
    BCL11A-9632 - ACUUGAACUUGCAGCUC 17 11468
    BCL11A-9633 - GAUGAAGAUAUUUUCUC 17 11469
    BCL11A-4528 + AAAAAAAAAAAAAAAAG 17 11470
    BCL11A-4433 + GCCGGGAGAGAAGAAAG 17 11471
    BCL11A-9634 - AGGUAAAAGAGAUAAAG 17 11472
    BCL11A-4475 + GGCGAGCAGGAGAGAAG 17 11473
    BCL11A-4389 + GAAGGGGAGGAGGGAAG 17 11474
    BCL11A-9635 + GGCCGCGGGCUCACCAG 17 11475
    BCL11A-9636 + GAAGAAAGGGGUGGCAG 17 11476
    BCL11A-9637 + CAAUGGACACACAUCAG 17 11477
    BCL11A-9638 - UUGAACUUGCAGCUCAG 17 11478
    BCL11A-4543 - AAGCGAGGGGGAGAGAG 17 11479
    BCL11A-4533 - AAAAGCGAGGGGGAGAG 17 11480
    BCL11A-4485 + GGGAGGGGCGGGCCGAG 17 11481
    BCL11A-9639 - CUAGAAGCAAAAGCGAG 17 11482
    BCL11A-4492 + GGGCGGGCCGAGGGGAG 17 11483
    BCL11A-9640 + AUGGCCAGUGCGGGGAG 17 11484
    BCL11A-4665 + CGCGGCCCCCGGGGGAG 17 11485
    BCL11A-9641 + AGAGAGAAGAGAGAUAG 17 11486
    BCL11A-9642 + GCUCCCCCCCACACACG 17 11487
    BCL11A-4427 + GCCAGACGCGGCCCCCG 17 11488
    BCL11A-9643 - GGCCCGCCCCUCCCCCG 17 11489
    BCL11A-9644 - GGCCACUGGUGAGCCCG 17 11490
    BCL11A-4670 - CGGCCACGCCACCGCCG 17 11491
    BCL11A-4470 + GGCCGCAGCGAGCGCCG 17 11492
    BCL11A-4502 + GGGGGAGGGGCGGGCCG 17 11493
    BCL11A-9645 + AGGGGGCGCUGGGGCCG 17 11494
    BCL11A-9646 + CGGGGCGGGGGGCUCCG 17 11495
    BCL11A-9647 - GCCGCGUCUGGCGUCCG 17 11496
    BCL11A-9648 + GGGGGAGGUGCGGGGCG 17 11497
    BCL11A-9649 + GCGCCGCGGCGGUGGCG 17 11498
    BCL11A-9650 + AGCCAAUGGCCAGUGCG 17 11499
    BCL11A-9651 + GGGGAGGGGGAGGUGCG 17 11500
    BCL11A-9652 - GGUAAAAGAGAUAAAGG 17 11501
    BCL11A-9653 - UGAACUUGCAGCUCAGG 17 11502
    BCL11A-9654 - UAGAAGCAAAAGCGAGG 17 11503
    BCL11A-4627 + CAGGAGAGAAGGGGAGG 17 11504
    BCL11A-4480 + GGCGGGCCGAGGGGAGG 17 11505
    BCL11A-9655 + UGGCCAGUGCGGGGAGG 17 11506
    BCL11A-4634 + CCAGACGCGGCCCCCGG 17 11507
    BCL11A-9656 - GCCCGCCCCUCCCCCGG 17 11508
    BCL11A-4660 + CGCAGCGAGCGCCGCGG 17 11509
    BCL11A-4588 + AGCGAGCGCCGCGGCGG 17 11510
    BCL11A-4478 + GGCGGCGGCGGCGGCGG 17 11511
    BCL11A-4447 + GCGGGCGGCGGCGGCGG 17 11512
    BCL11A-4500 + GGGGCGGGCGGCGGCGG 17 11513
    BCL11A-5409 + UGCGGGGCGGGCGGCGG 17 11514
    BCL11A-5410 + GGCUGCGGGGCGGGCGG 17 11515
    BCL11A-9657 + GGGGAGGUGCGGGGCGG 17 11516
    BCL11A-9658 + GGGGUGGGAGGAAAGGG 17 11517
    BCL11A-9659 - GAACUUGCAGCUCAGGG 17 11518
    BCL11A-4444 + GCGGCGGCGGCGGCGGG 17 11519
    BCL11A-5411 + GUGGGCUGCGGGGCGGG 17 11520
    BCL11A-9660 + GGGAGGUGCGGGGCGGG 17 11521
    BCL11A-4483 + GGGAGAGAAGAAAGGGG 17 11522
    BCL11A-4407 + GAGCAGGAGAGAAGGGG 17 11523
    BCL11A-9661 + GAAAGGGGUGGCAGGGG 17 11524
    BCL11A-4593 + AGGGGCGGGCCGAGGGG 17 11525
    BCL11A-4467 + GGCCCCCGGGGGAGGGG 17 11526
    BCL11A-5413 + CAUGGUGGGCUGCGGGG 17 11527
    BCL11A-9662 + CAAUGGCCAGUGCGGGG 17 11528
    BCL11A-9663 + GAGGGGGAGGUGCGGGG 17 11529
    BCL11A-9664 + CCAGUGCGGGGAGGGGG 17 11530
    BCL11A-4395 + GACGCGGCCCCCGGGGG 17 11531
    BCL11A-9665 + GGGAGGAAAGGGUGGGG 17 11532
    BCL11A-9666 + UGGGAGGAAAGGGUGGG 17 11533
    BCL11A-9667 + GGGGUGGCAGGGGUGGG 17 11534
    BCL11A-9668 - GAGUCCGCGUGUGUGGG 17 11535
    BCL11A-5414 + CUUGCGGCGAGACAUGG 17 11536
    BCL11A-9669 + GUGGGAGGAAAGGGUGG 17 11537
    BCL11A-9670 - AGAGUCCGCGUGUGUGG 17 11538
    BCL11A-9671 + UGGUUCCAGAUGGGAUG 17 11539
    BCL11A-9672 + GAGGGGAGGGGGCGCUG 17 11540
    BCL11A-9673 - CGCCGCGGCGCUCGCUG 17 11541
    BCL11A-5422 + CGAGACAUGGUGGGCUG 17 11542
    BCL11A-9674 + AGCUGCAAGUUCAAGUG 17 11543
    BCL11A-9675 + CAAGCCAAUGGCCAGUG 17 11544
    BCL11A-9676 + GCGGGGAGGGGGAGGUG 17 11545
    BCL11A-9677 + GGUGGGAGGAAAGGGUG 17 11546
    BCL11A-9678 - UUUAGAGUCCGCGUGUG 17 11547
    BCL11A-9679 + GCAGGGAAGAUGAAUUG 17 11548
    BCL11A-5426 + GGGGUUUGCCUUGCUUG 17 11549
    BCL11A-9680 + AGAGACACACAAAACAU 17 11550
    BCL11A-9681 - CCCUGAUGUGUGUCCAU 17 11551
    BCL11A-5431 + AUUAUUAUUACUAUUAU 17 11552
    BCL11A-9682 - CCAGCGCCCCCUCCCCU 17 11553
    BCL11A-9683 + CGAGGGGAGGGGGCGCU 17 11554
    BCL11A-9684 + UCUUUUACCUCGACUCU 17 11555
    BCL11A-9685 + GGGUGGGAGGAAAGGGU 17 11556
    BCL11A-9686 + AAAGGGGUGGCAGGGGU 17 11557
    BCL11A-9687 - UUAGAGUCCGCGUGUGU 17 11558
    BCL11A-9688 + CAGGGAAGAUGAAUUGU 17 11559
    BCL11A-5439 + UUAUUAUUACUAUUAUU 17 11560
    BCL11A-9689 - UUAUUUCUAAUUUAUUU 17 11561
    BCL11A-9690 + AGAGAGAGAGAUGAAAAAAA 20 11562
    BCL11A-5443 - AACCCCAGCACUUAAGCAAA 20 11563
    BCL11A-9691 - AAUUUAUUUUGGAUGUCAAA 20 11564
    BCL11A-9692 + GUGGCAGGGGUGGGAGGAAA 20 11565
    BCL11A-9693 - GUCGAGGUAAAAGAGAUAAA 20 11566
    BCL11A-9694 + UAAAAUUAAAUAAAAUUAAA 20 11567
    BCL11A-9695 + GAAGGGGAAGCUCACACCAA 20 11568
    BCL11A-4541 + AAGAGACCAGGACAAGCCAA 20 11569
    BCL11A-9696 + CAAAAGUGCAUACACGGCAA 20 11570
    BCL11A-9697 + GCGUGGCCGGGAGAGAAGAA 20 11571
    BCL11A-4422 + GCAGGGCGAGCAGGAGAGAA 20 11572
    BCL11A-9698 + GGUGGCAGGGGUGGGAGGAA 20 11573
    BCL11A-4404 + GAGAGAAGGGGAGGAGGGAA 20 11574
    BCL11A-9699 - AGUCGAGGUAAAAGAGAUAA 20 11575
    BCL11A-4455 + GGACAGAGACACACAAAACA 20 11576
    BCL11A-9700 + CUGUCUCAAAAGUGCAUACA 20 11577
    BCL11A-9701 - CGCGUGUGUGGGGGGGAGCA 20 11578
    BCL11A-9702 + AAUAAUACAAAGAUGGCGCA 20 11579
    BCL11A-9703 + AGACACACAAAACAUGGGCA 20 11580
    BCL11A-9704 + GAGAGAAGAAAGGGGUGGCA 20 11581
    BCL11A-9705 - GCACUUGAACUUGCAGCUCA 20 11582
    BCL11A-9706 + GAAUUGUGGGAGAGCCGUCA 20 11583
    BCL11A-4527 + AAAAAAAAAAAAAAAAAAGA 20 11584
    BCL11A-9707 + AAUUAGAAAUAAUACAAAGA 20 11585
    BCL11A-9708 + GGAGAGCCGGGUUAGAAAGA 20 11586
    BCL11A-4464 + GGCAGGGCGAGCAGGAGAGA 20 11587
    BCL11A-4418 - GCAAAAGCGAGGGGGAGAGA 20 11588
    BCL11A-9709 + AGAGAGAGAAGAGAGAUAGA 20 11589
    BCL11A-4673 + CGGCGGCGGCGGGCGGACGA 20 11590
    BCL11A-4648 + CCGGGGGAGGGGCGGGCCGA 20 11591
    BCL11A-9710 - AGGACUAGAAGCAAAAGCGA 20 11592
    BCL11A-4584 + AGCAGGAGAGAAGGGGAGGA 20 11593
    BCL11A-4459 + GGAGAGAAGGGGAGGAGGGA 20 11594
    BCL11A-4461 + GGAGGGGCGGGCCGAGGGGA 20 11595
    BCL11A-4624 + CAGACGCGGCCCCCGGGGGA 20 11596
    BCL11A-9711 + UUGAACGUCAGGAGUCUGGA 20 11597
    BCL11A-9712 - UGCUUAAAAAAAAGCCAUGA 20 11598
    BCL11A-5458 - ACCCCAGCACUUAAGCAAAC 20 11599
    BCL11A-9713 - GCGGCGCUCGCUGCGGCCAC 20 11600
    BCL11A-9714 - GCACCUCCCCCUCCCCGCAC 20 11601
    BCL11A-9715 + CUGGACAUGAAAAAGAGACC 20 11602
    BCL11A-4456 + GGACGCCAGACGCGGCCCCC 20 11603
    BCL11A-9716 - CCUCGGCCCGCCCCUCCCCC 20 11604
    BCL11A-4362 + CGGACGCCAGACGCGGCCCC 20 11605
    BCL11A-9717 - CCCUCGGCCCGCCCCUCCCC 20 11606
    BCL11A-9718 + GCCGCGGCGGUGGCGUGGCC 20 11607
    BCL11A-9719 - GCCACCCCUUUCUUCUCUCC 20 11608
    BCL11A-9720 - CACUGGCCAUUGGCUUGUCC 20 11609
    BCL11A-9721 + AAAACAUGGGCAGGGCGAGC 20 11610
    BCL11A-9722 + GGAGGGGGCGCUGGGGCCGC 20 11611
    BCL11A-4490 + GGGCCGAGGGGAGGGGGCGC 20 11612
    BCL11A-4442 + GCGGCGGCGGCGGCGGCGGC 20 11613
    BCL11A-9723 + AAUGGACACACAUCAGGGGC 20 11614
    BCL11A-4439 + GCGGCCCCCGGGGGAGGGGC 20 11615
    BCL11A-5465 + GACAUGGUGGGCUGCGGGGC 20 11616
    BCL11A-9724 + GGGAGGGGGAGGUGCGGGGC 20 11617
    BCL11A-9725 + CGCCGCGGCGGUGGCGUGGC 20 11618
    BCL11A-9726 + GGAGAGAAGAAAGGGGUGGC 20 11619
    BCL11A-5468 + GGCGAGACAUGGUGGGCUGC 20 11620
    BCL11A-9727 + GACAAGCCAAUGGCCAGUGC 20 11621
    BCL11A-9728 + GUGCGGGGAGGGGGAGGUGC 20 11622
    BCL11A-9729 + CACACCAAUGGACACACAUC 20 11623
    BCL11A-9730 - GAAAAAACCCUCAUCCCAUC 20 11624
    BCL11A-9731 - ACUGAUGAAGAUAUUUUCUC 20 11625
    BCL11A-9732 + GAACUUGAACGUCAGGAGUC 20 11626
    BCL11A-9733 - CCUCCCCCGGGGGCCGCGUC 20 11627
    BCL11A-4526 + AAAAAAAAAAAAAAAAAAAG 20 11628
    BCL11A-9734 + GUGGCCGGGAGAGAAGAAAG 20 11629
    BCL11A-4629 + CAGGGCGAGCAGGAGAGAAG 20 11630
    BCL11A-4577 + AGAGAAGGGGAGGAGGGAAG 20 11631
    BCL11A-9735 + UGGGGCCGCGGGCUCACCAG 20 11632
    BCL11A-9736 + AGAGAAGAAAGGGGUGGCAG 20 11633
    BCL11A-9737 + CACCAAUGGACACACAUCAG 20 11634
    BCL11A-9738 - CACUUGAACUUGCAGCUCAG 20 11635
    BCL11A-4611 - CAAAAGCGAGGGGGAGAGAG 20 11636
    BCL11A-4583 - AGCAAAAGCGAGGGGGAGAG 20 11637
    BCL11A-4677 + CGGGGGAGGGGCGGGCCGAG 20 11638
    BCL11A-9739 - GGACUAGAAGCAAAAGCGAG 20 11639
    BCL11A-4411 + GAGGGGCGGGCCGAGGGGAG 20 11640
    BCL11A-4575 + AGACGCGGCCCCCGGGGGAG 20 11641
    BCL11A-9740 + GAGAGAGAGAAGAGAGAUAG 20 11642
    BCL11A-9741 + CCUGCUCCCCCCCACACACG 20 11643
    BCL11A-9742 + GGCUCCGCGGACGCCAGACG 20 11644
    BCL11A-9743 - CUCGGCCCGCCCCUCCCCCG 20 11645
    BCL11A-9744 - UCCCGGCCACGCCACCGCCG 20 11646
    BCL11A-9745 + AGUGGCCGCAGCGAGCGCCG 20 11647
    BCL11A-4642 + CCCGGGGGAGGGGCGGGCCG 20 11648
    BCL11A-9746 + GGGAGGGGGCGCUGGGGCCG 20 11649
    BCL11A-9747 + GUGCGGGGCGGGGGGCUCCG 20 11650
    BCL11A-9748 - CAGGACUAGAAGCAAAAGCG 20 11651
    BCL11A-9749 + GGAGGGGGAGGUGCGGGGCG 20 11652
    BCL11A-9750 + CGAGCGCCGCGGCGGUGGCG 20 11653
    BCL11A-9751 + ACAAGCCAAUGGCCAGUGCG 20 11654
    BCL11A-9752 + UGCGGGGAGGGGGAGGUGCG 20 11655
    BCL11A-9753 - CGAGGUAAAAGAGAUAAAGG 20 11656
    BCL11A-9754 - ACUUGAACUUGCAGCUCAGG 20 11657
    BCL11A-9755 - GACUAGAAGCAAAAGCGAGG 20 11658
    BCL11A-4408 + GAGCAGGAGAGAAGGGGAGG 20 11659
    BCL11A-4594 + AGGGGCGGGCCGAGGGGAGG 20 11660
    BCL11A-9756 + CAAUGGCCAGUGCGGGGAGG 20 11661
    BCL11A-9757 - UCGGCCCGCCCCUCCCCCGG 20 11662
    BCL11A-4471 + GGCCGCAGCGAGCGCCGCGG 20 11663
    BCL11A-4661 + CGCAGCGAGCGCCGCGGCGG 20 11664
    BCL11A-4479 + GGCGGCGGCGGCGGCGGCGG 20 11665
    BCL11A-4448 + GCGGGCGGCGGCGGCGGCGG 20 11666
    BCL11A-4501 + GGGGCGGGCGGCGGCGGCGG 20 11667
    BCL11A-5484 + UGCGGGGCGGGCGGCGGCGG 20 11668
    BCL11A-5485 + GGCUGCGGGGCGGGCGGCGG 20 11669
    BCL11A-5486 + GUGGGCUGCGGGGCGGGCGG 20 11670
    BCL11A-9758 + GAGGGGGAGGUGCGGGGCGG 20 11671
    BCL11A-9759 + GCAGGGGUGGGAGGAAAGGG 20 11672
    BCL11A-9760 - CUUGAACUUGCAGCUCAGGG 20 11673
    BCL11A-4443 + GCGGCGGCGGCGGCGGCGGG 20 11674
    BCL11A-5487 + AUGGUGGGCUGCGGGGCGGG 20 11675
    BCL11A-9761 + AGGGGGAGGUGCGGGGCGGG 20 11676
    BCL11A-4434 + GCCGGGAGAGAAGAAAGGGG 20 11677
    BCL11A-4476 + GGCGAGCAGGAGAGAAGGGG 20 11678
    BCL11A-9762 + GAAGAAAGGGGUGGCAGGGG 20 11679
    BCL11A-4486 + GGGAGGGGCGGGCCGAGGGG 20 11680
    BCL11A-4666 + CGCGGCCCCCGGGGGAGGGG 20 11681
    BCL11A-5489 + AGACAUGGUGGGCUGCGGGG 20 11682
    BCL11A-9763 + AGCCAAUGGCCAGUGCGGGG 20 11683
    BCL11A-9764 + GGGGAGGGGGAGGUGCGGGG 20 11684
    BCL11A-9765 + UGGCCAGUGCGGGGAGGGGG 20 11685
    BCL11A-4635 + CCAGACGCGGCCCCCGGGGG 20 11686
    BCL11A-9766 + GGUGGGAGGAAAGGGUGGGG 20 11687
    BCL11A-9767 + GGGUGGGAGGAAAGGGUGGG 20 11688
    BCL11A-9768 + AAAGGGGUGGCAGGGGUGGG 20 11689
    BCL11A-9769 - UUAGAGUCCGCGUGUGUGGG 20 11690
    BCL11A-5490 + UUGCUUGCGGCGAGACAUGG 20 11691
    BCL11A-9770 + GGGGUGGGAGGAAAGGGUGG 20 11692
    BCL11A-9771 + GCCGAGGGGAGGGGGCGCUG 20 11693
    BCL11A-9772 - CACCGCCGCGGCGCUCGCUG 20 11694
    BCL11A-5497 + UCCCGUUUGCUUAAGUGCUG 20 11695
    BCL11A-9773 + GGACAAGCCAAUGGCCAGUG 20 11696
    BCL11A-9774 + AGUGCGGGGAGGGGGAGGUG 20 11697
    BCL11A-9775 + AGGGGUGGGAGGAAAGGGUG 20 11698
    BCL11A-9776 - UUUUAGAGUCCGCGUGUGUG 20 11699
    BCL11A-9777 + GGCGCAGGGAAGAUGAAUUG 20 11700
    BCL11A-5500 + GCUGGGGUUUGCCUUGCUUG 20 11701
    BCL11A-9778 + GACAGAGACACACAAAACAU 20 11702
    BCL11A-9779 - CCCCUCCCCGCACUGGCCAU 20 11703
    BCL11A-9780 + ACACGGCAAUGGUUCCAGAU 20 11704
    BCL11A-9781 + AUAAUUAUUAUUACUAUUAU 20 11705
    BCL11A-9782 - GCCCCAGCGCCCCCUCCCCU 20 11706
    BCL11A-9783 + GGCCGAGGGGAGGGGGCGCU 20 11707
    BCL11A-5509 + UUCCCGUUUGCUUAAGUGCU 20 11708
    BCL11A-9784 + CAGGGGUGGGAGGAAAGGGU 20 11709
    BCL11A-9785 + AAGAAAGGGGUGGCAGGGGU 20 11710
    BCL11A-9786 + GCGCAGGGAAGAUGAAUUGU 20 11711
    BCL11A-9787 + UAAUUAUUAUUACUAUUAUU 20 11712
    BCL11A-9788 - GUAUUAUUUCUAAUUUAUUU 20 11713
  • Table 18C provides exemplary targeting domains for knocking down the BCL11A gene selected according to the third tier parameters. The targeting domains binds within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to 1 kb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 18C
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-9789 - CACUCACCGUAAGAAAA 17 11714
    BCL11A-9790 + CCUCUGGCCGGAACAAA 17 11715
    BCL11A-9791 + CGAGGAGCCGGCACAAA 17 11716
    BCL11A-9792 - UAUUUCUCUUUUCGAAA 17 11717
    BCL11A-9793 - GGGAGCUGGUGGGGAAA 17 11718
    BCL11A-9794 - AAGUGGCACUGUGGAAA 17 11719
    BCL11A-9795 + GGGCUGCGGGUCCGGAA 17 11720
    BCL11A-9796 + GAAAUAAAGCGGCGGAA 17 11721
    BCL11A-9797 - UGGGAGCUGGUGGGGAA 17 11722
    BCL11A-9798 - AAAGUGGCACUGUGGAA 17 11723
    BCL11A-9799 + GCCCGAGGGCGCCCCCA 17 11724
    BCL11A-9800 + CGUCCUUCCCGGUCCCA 17 11725
    BCL11A-9801 + CCCCCAAGGCCGAGCCA 17 11726
    BCL11A-9802 + CCCGCGUGUGGACGCCA 17 11727
    BCL11A-9597 - GUGUGUGGGGGGGAGCA 17 11728
    BCL11A-9803 + AGGUGGGAGGGAGCGCA 17 11729
    BCL11A-9804 - GGACACCAGCGCGCUCA 17 11730
    BCL11A-9805 + CGCGCGGCCUGGAAAGA 17 11731
    BCL11A-9806 - UCCGCGGAGUCGGGAGA 17 11732
    BCL11A-9807 + CGCAGGCCGGGGCCCGA 17 11733
    BCL11A-9808 - GAGAGGGGCCGCGGCGA 17 11734
    BCL11A-9809 + AGCUCCGCAGCGGGCGA 17 11735
    BCL11A-9810 - CGUGGGACCGGGAAGGA 17 11736
    BCL11A-9811 - GGUGUGCGUACGGAGGA 17 11737
    BCL11A-9812 + AGGGCUGCGGGUCCGGA 17 11738
    BCL11A-9813 + GGGGAAGCGCGGGCGGA 17 11739
    BCL11A-9814 - AAAUGGGGGGGUAGGGA 17 11740
    BCL11A-9815 - GAGCCGUGGGACCGGGA 17 11741
    BCL11A-9816 - CGCGGCGGCGGCGGGGA 17 11742
    BCL11A-9817 + GGCGAGGGGAGGUGGGA 17 11743
    BCL11A-9818 + UCCAGCCUAAGUUUGGA 17 11744
    BCL11A-9819 - AAUAAUGAACAAUGCUA 17 11745
    BCL11A-9820 - GGAAGUGGGUGUGCGUA 17 11746
    BCL11A-9821 - AAGAAAAUGGGGGGGUA 17 11747
    BCL11A-9822 + ACCCCCCCAUUUUCUUA 17 11748
    BCL11A-9823 + UCAUUAUUUUGCAAAAC 17 11749
    BCL11A-9824 + AUAGAGCGAGAGUGCAC 17 11750
    BCL11A-9825 - GAGAAAAGAGGUGAGAC 17 11751
    BCL11A-9826 - AGAGGGGCCGCGGCGAC 17 11752
    BCL11A-9827 - GUGGGACCGGGAAGGAC 17 11753
    BCL11A-9828 + AAGGCCGAGCCAGGGAC 17 11754
    BCL11A-9829 + GCCUGGAAAGAGGGGAC 17 11755
    BCL11A-9830 - GGGGAGAGCCGUGGGAC 17 11756
    BCL11A-9831 - CAACUCACAUGCAAACC 17 11757
    BCL11A-9832 + UAGAGCGAGAGUGCACC 17 11758
    BCL11A-9833 + AGGCCGAGCCAGGGACC 17 11759
    BCL11A-9834 + CCUGGAAAGAGGGGACC 17 11760
    BCL11A-9835 - GGGAGAGCCGUGGGACC 17 11761
    BCL11A-9836 - CCGGGAGCAACUCUACC 17 11762
    BCL11A-9837 + CACCAGCUCCCACCCCC 17 11763
    BCL11A-9838 + CGGGAGGCUGCAGCCCC 17 11764
    BCL11A-9839 - GCUUUUACUUCGGCCCC 17 11765
    BCL11A-9840 - CUGUGGAAAGGGGCCCC 17 11766
    BCL11A-9841 + UCACCUCUUUUCUCCCC 17 11767
    BCL11A-9842 - CCGCGCUUCCCCAGCCC 17 11768
    BCL11A-9843 + CCGGGAGGCUGCAGCCC 17 11769
    BCL11A-9844 - GGGGCGCCCUCGGGCCC 17 11770
    BCL11A-9845 - CGCCGCCUGCCUCUCCC 17 11771
    BCL11A-9846 + CUCACCUCUUUUCUCCC 17 11772
    BCL11A-9847 - UCUAAAAAACGAUUCCC 17 11773
    BCL11A-9848 + GCGGGCGGAGGGAAGCC 17 11774
    BCL11A-9849 - CCCGCGCUUCCCCAGCC 17 11775
    BCL11A-9850 + GCCCCCAAGGCCGAGCC 17 11776
    BCL11A-9851 + CCCCGCGUGUGGACGCC 17 11777
    BCL11A-9852 + GCGGACUCAGGAGCGCC 17 11778
    BCL11A-9853 + GGCAGGCGGCGCAGGCC 17 11779
    BCL11A-9854 + CAGGAGCCCGCGCGGCC 17 11780
    BCL11A-9855 - CCGGGGCUGCAGCCUCC 17 11781
    BCL11A-9856 - CAGGCCGCGCGGGCUCC 17 11782
    BCL11A-9857 + CCAGGUAGAGUUGCUCC 17 11783
    BCL11A-9858 + GCAGCGCCCAAGUCUCC 17 11784
    BCL11A-9859 - UACGGAGGAGGGUGUCC 17 11785
    BCL11A-9860 - GUCUAAAAAACGAUUCC 17 11786
    BCL11A-9861 + GCGUCUCCCGUCCUUCC 17 11787
    BCL11A-9862 - CCCGGUCCCCUCUUUCC 17 11788
    BCL11A-9863 + AGUUACAGCUCCGCAGC 17 11789
    BCL11A-9864 + CCGGCACAAAAGGCAGC 17 11790
    BCL11A-9865 - ACGGUCAAGUGUGCAGC 17 11791
    BCL11A-9866 + GGGCAAGCGCGAGGAGC 17 11792
    BCL11A-9620 - CGUGUGUGGGGGGGAGC 17 11793
    BCL11A-9867 - AACCUGGGGGUGGGAGC 17 11794
    BCL11A-9868 - CCCUGGCGUCCACACGC 17 11795
    BCL11A-9869 - UUCCCGAGCGCAGCCGC 17 11796
    BCL11A-9870 + CCGGGCUGGGGAAGCGC 17 11797
    BCL11A-9871 + CGCGGACUCAGGAGCGC 17 11798
    BCL11A-9872 - CUCUUUCCAGGCCGCGC 17 11799
    BCL11A-9873 + CUUGACCGUGAGCGCGC 17 11800
    BCL11A-9874 + GGAGAGGCAGGCGGCGC 17 11801
    BCL11A-9875 + AGGCAGGCGGCGCAGGC 17 11802
    BCL11A-9876 + GGGGACCGGGGAGAGGC 17 11803
    BCL11A-9877 - GCCCUCCAAACUUAGGC 17 11804
    BCL11A-9878 - AGGACGGGAGACGCGGC 17 11805
    BCL11A-9879 - GCGAGCGCGGCGGCGGC 17 11806
    BCL11A-9880 + AGGCUGCAGCCCCGGGC 17 11807
    BCL11A-9881 + UGCAAAACUGGCGGGGC 17 11808
    BCL11A-9882 + UAUUUUGCAAAACUGGC 17 11809
    BCL11A-9883 + AAACACCCACCUCUGGC 17 11810
    BCL11A-9884 + UAAGUUUGGAGGGCUGC 17 11811
    BCL11A-9885 + ACAAAAGGCGGCAGUGC 17 11812
    BCL11A-9886 - CCCGCUGCCUUUUGUGC 17 11813
    BCL11A-9887 + CCCGACUCCGCGGACUC 17 11814
    BCL11A-9888 + GGACAAACACCCACCUC 17 11815
    BCL11A-9889 - GCCUUGGGGGCGCCCUC 17 11816
    BCL11A-9890 - UUUGCUGUCCUCUCCUC 17 11817
    BCL11A-9891 + AGCCCGCGGCUGCGCUC 17 11818
    BCL11A-9892 - AGCGCAGCCGCGGGCUC 17 11819
    BCL11A-9893 - CCUGAGUCCGCGGAGUC 17 11820
    BCL11A-9894 + UUGGAGGGCUGCGGGUC 17 11821
    BCL11A-9895 - GUACGGAGGAGGGUGUC 17 11822
    BCL11A-9896 - GCUCAGCUCUCAACUUC 17 11823
    BCL11A-9897 - CUUGGGCGCUGCCCUUC 17 11824
    BCL11A-9898 - ACUGCCGCCUUUUGUUC 17 11825
    BCL11A-9899 - AUUCCCGGGGAGAAAAG 17 11826
    BCL11A-9900 - CCACAAUAGUGAGAAAG 17 11827
    BCL11A-9901 + GGCGGAAAGGAGGAAAG 17 11828
    BCL11A-9902 + CCGCGCGGCCUGGAAAG 17 11829
    BCL11A-9903 - AGUGGCACUGUGGAAAG 17 11830
    BCL11A-9904 + CGAAAAGAGAAAUAAAG 17 11831
    BCL11A-9905 - GCGGCGGGGAGGGGAAG 17 11832
    BCL11A-9906 + CCGCGUGUGGACGCCAG 17 11833
    BCL11A-9907 - CCUUUUGUUCCGGCCAG 17 11834
    BCL11A-9908 + AAGUUACAGCUCCGCAG 17 11835
    BCL11A-9909 + GCCGGCACAAAAGGCAG 17 11836
    BCL11A-9910 - CACGGUCAAGUGUGCAG 17 11837
    BCL11A-9911 + GCGCGGCCUGGAAAGAG 17 11838
    BCL11A-9912 - CCGCGGAGUCGGGAGAG 17 11839
    BCL11A-9913 + GCUCCGCAGCGGGCGAG 17 11840
    BCL11A-9914 + AAACUUUGCCCGAGGAG 17 11841
    BCL11A-9915 - GUCCGCGGAGUCGGGAG 17 11842
    BCL11A-9916 + AAGAGGGGACCGGGGAG 17 11843
    BCL11A-9917 - GCGGCGGCGGCGGGGAG 17 11844
    BCL11A-9918 + GCGGGGCGGGGGGGGAG 17 11845
    BCL11A-9919 + CAUUUUCUUACGGUGAG 17 11846
    BCL11A-9920 + GGGAGCGCACGGCAACG 17 11847
    BCL11A-9642 + GCUCCCCCCCACACACG 17 11848
    BCL11A-9921 - CCCCUGGCGUCCACACG 17 11849
    BCL11A-9922 - GGGAAGGACGGGAGACG 17 11850
    BCL11A-9923 - GAGGGGCCGCGGCGACG 17 11851
    BCL11A-9924 + CUGGAAAGAGGGGACCG 17 11852
    BCL11A-9925 - CGCGCUUCCCCAGCCCG 17 11853
    BCL11A-9926 + UAAAAGCCCCGAGCCCG 17 11854
    BCL11A-9927 + GCGCAGGCCGGGGCCCG 17 11855
    BCL11A-9928 + UCGGGAAACUUUGCCCG 17 11856
    BCL11A-9929 - CUAAAAAACGAUUCCCG 17 11857
    BCL11A-9930 - UUUCCCGAGCGCAGCCG 17 11858
    BCL11A-9931 - GGCGACGGGGAGAGCCG 17 11859
    BCL11A-9932 + CGGACUCAGGAGCGCCG 17 11860
    BCL11A-9933 + GGCUCUCCCCGUCGCCG 17 11861
    BCL11A-9934 + GCAGGCGGCGCAGGCCG 17 11862
    BCL11A-9935 - AGUCGGGAGAGGGGCCG 17 11863
    BCL11A-9936 + CCCCUCUCCCGACUCCG 17 11864
    BCL11A-9937 - CGGCGCUCCUGAGUCCG 17 11865
    BCL11A-9938 + CCCGGGCUGGGGAAGCG 17 11866
    BCL11A-9939 - CACGCGGGGAGCGAGCG 17 11867
    BCL11A-9940 - CCUGGCGUCCACACGCG 17 11868
    BCL11A-9941 + GUCUCCAGGAGCCCGCG 17 11869
    BCL11A-9942 - CCUCUUUCCAGGCCGCG 17 11870
    BCL11A-9943 + GCGGGAGGGCAAGCGCG 17 11871
    BCL11A-9944 - CGAGCGCGGCGGCGGCG 17 11872
    BCL11A-9945 + CAGCUCCGCAGCGGGCG 17 11873
    BCL11A-9946 + GCAAAACUGGCGGGGCG 17 11874
    BCL11A-9947 + AUUUUGCAAAACUGGCG 17 11875
    BCL11A-9948 - GCGCAGCCGCGGGCUCG 17 11876
    BCL11A-9949 + CUGGCCGGAACAAAAGG 17 11877
    BCL11A-9950 + AUAAAGCGGCGGAAAGG 17 11878
    BCL11A-9951 + GACCGGGGAGAGGCAGG 17 11879
    BCL11A-9952 + GGAAAGGAGGAAAGAGG 17 11880
    BCL11A-9953 - UUUGUUCCGGCCAGAGG 17 11881
    BCL11A-9954 - GGGUGUGCGUACGGAGG 17 11882
    BCL11A-9955 + CAGCGGGCGAGGGGAGG 17 11883
    BCL11A-9956 - AGUGGGUGUGCGUACGG 17 11884
    BCL11A-9957 + GGACUCAGGAGCGCCGG 17 11885
    BCL11A-9958 + AAAGAGAAAUAAAGCGG 17 11886
    BCL11A-9959 - GCGGGGAGCGAGCGCGG 17 11887
    BCL11A-9960 - GGGAGCGAGCGCGGCGG 17 11888
    BCL11A-9961 - AGCGAGCGCGGCGGCGG 17 11889
    BCL11A-9962 + UGGGGAAGCGCGGGCGG 17 11890
    BCL11A-9963 + CAAAACUGGCGGGGCGG 17 11891
    BCL11A-9964 - AGCUGGUGGGGAAAGGG 17 11892
    BCL11A-9965 - AAAAUGGGGGGGUAGGG 17 11893
    BCL11A-9966 + AGCGAGAGUGCACCGGG 17 11894
    BCL11A-9967 - GUCAAGUGUGCAGCGGG 17 11895
    BCL11A-9968 + GGCUGGGGAAGCGCGGG 17 11896
    BCL11A-9969 + AAAACUGGCGGGGCGGG 17 11897
    BCL11A-9970 + CCGCAGCGGGCGAGGGG 17 11898
    BCL11A-9971 - GCGCGGCGGCGGCGGGG 17 11899
    BCL11A-9972 + AAACUGGCGGGGCGGGG 17 11900
    BCL11A-9973 + UUGCAAAACUGGCGGGG 17 11901
    BCL11A-9974 + AACUGGCGGGGCGGGGG 17 11902
    BCL11A-9975 - ACAUGCAAACCUGGGGG 17 11903
    BCL11A-9976 - ACCGUAAGAAAAUGGGG 17 11904
    BCL11A-9548 - AGUCCGCGUGUGUGGGG 17 11905
    BCL11A-9977 - CACCGUAAGAAAAUGGG 17 11906
    BCL11A-9978 + GGGCGAGGGGAGGUGGG 17 11907
    BCL11A-9668 - GAGUCCGCGUGUGUGGG 17 11908
    BCL11A-9979 - UCACCGUAAGAAAAUGG 17 11909
    BCL11A-9980 + UUAUUUUGCAAAACUGG 17 11910
    BCL11A-9981 - CUCACAUGCAAACCUGG 17 11911
    BCL11A-9982 - CUGGGGGUGGGAGCUGG 17 11912
    BCL11A-9670 - AGAGUCCGCGUGUGUGG 17 11913
    BCL11A-9983 - GCGGAGCUGUAACUUGG 17 11914
    BCL11A-9984 - CCCUGGCUCGGCCUUGG 17 11915
    BCL11A-9985 + AUCCAGCCUAAGUUUGG 17 11916
    BCL11A-9986 - CUCACCGUAAGAAAAUG 17 11917
    BCL11A-9987 - GUGAGAAAGUGGCACUG 17 11918
    BCL11A-9988 - ACUCACAUGCAAACCUG 17 11919
    BCL11A-9989 - CCUCCCCUCGCCCGCUG 17 11920
    BCL11A-9990 + CUAAGUUUGGAGGGCUG 17 11921
    BCL11A-9991 + GCUGCAGCCCCGGGCUG 17 11922
    BCL11A-9992 + CGCUCGCUCCCCGCGUG 17 11923
    BCL11A-9993 - GGGGGUGGGAGCUGGUG 17 11924
    BCL11A-9678 - UUUAGAGUCCGCGUGUG 17 11925
    BCL11A-9549 - UAGAGUCCGCGUGUGUG 17 11926
    BCL11A-9994 + ACUUUCUCACUAUUGUG 17 11927
    BCL11A-9995 + CCACUUUCUCACUAUUG 17 11928
    BCL11A-9996 - UCCCUGGCUCGGCCUUG 17 11929
    BCL11A-9997 - ACUCACCGUAAGAAAAU 17 11930
    BCL11A-9998 - GCUGCGGAGCUGUAACU 17 11931
    BCL11A-9999 - GCGGGCUCCUGGAGACU 17 11932
    BCL11A-10000 - AACUCACAUGCAAACCU 17 11933
    BCL11A-10001 - GGCCUUGGGGGCGCCCU 17 11934
    BCL11A-10002 - GGUCCCUGGCUCGGCCU 17 11935
    BCL11A-10003 - CUUUGCUGUCCUCUCCU 17 11936
    BCL11A-10004 + GAGCCCGCGGCUGCGCU 17 11937
    BCL11A-10005 + GGCUGCAGCCCCGGGCU 17 11938
    BCL11A-10006 - GAGCGCAGCCGCGGGCU 17 11939
    BCL11A-10007 - CGGCGGGGAGGGGAAGU 17 11940
    BCL11A-10008 - UCCUGAGUCCGCGGAGU 17 11941
    BCL11A-10009 + AUUUUCUUACGGUGAGU 17 11942
    BLC11A-10010 - GCGACGGGGAGAGCCGU 17 11943
    BCL11A-10011 - UUGUUCCGGCCAGAGGU 17 11944
    BCL11A-10012 + AGCGGGCGAGGGGAGGU 17 11945
    BCL11A-10013 - UAAGAAAAUGGGGGGGU 17 11946
    BCL11A-10014 - CAUGCAAACCUGGGGGU 17 11947
    BCL11A-10015 - UGGGGGUGGGAGCUGGU 17 11948
    BCL11A-9687 - UUAGAGUCCGCGUGUGU 17 11949
    BCL11A-10016 + CACUUUCUCACUAUUGU 17 11950
    BCL11A-10017 - CGCAGCCCUCCAAACUU 17 11951
    BCL11A-10018 - GGCUCAGCUCUCAACUU 17 11952
    BCL11A-10019 - CGGGCUCCUGGAGACUU 17 11953
    BCL11A-10020 - GCUCGGGGCUUUUACUU 17 11954
    BCL11A-10021 - GUCCCUGGCUCGGCCUU 17 11955
    BCL11A-10022 + GGAAUCCAGCCUAAGUU 17 11956
    BCL11A-10023 - GAGGUGAGACUGGCUUU 17 11957
    BCL11A-10024 - UCCCACUCACCGUAAGAAAA 20 11958
    BLC11A-10025 + CCACCUCUGGCCGGAACAAA 20 11959
    BCL11A-10026 + GCGCGAGGAGCCGGCACAAA 20 11960
    BCL11A-10027 - CUUUAUUUCUCUUUUCGAAA 20 11961
    BCL11A-10028 - GGUGGGAGCUGGUGGGGAAA 20 11962
    BCL11A-10029 - AGAAAGUGGCACUGUGGAAA 20 11963
    BCL11A-10030 + GGAGGGCUGCGGGUCCGGAA 20 11964
    BCL11A-10031 + AGAGAAAUAAAGCGGCGGAA 20 11965
    BCL11A-10032 - GGGUGGGAGCUGGUGGGGAA 20 11966
    BCL11A-10033 - GAGAAAGUGGCACUGUGGAA 20 11967
    BCL11A-10034 + GGGGCCCGAGGGCGCCCCCA 20 11968
    BCL11A-10035 + UCCCGUCCUUCCCGGUCCCA 20 11969
    BCL11A-10036 + GCGCCCCCAAGGCCGAGCCA 20 11970
    BCL11A-10037 + CUCCCCGCGUGUGGACGCCA 20 11971
    BCL11A-9701 - CGCGUGUGUGGGGGGGAGCA 20 11972
    BCL11A-10038 + GGGAGGUGGGAGGGAGCGCA 20 11973
    BCL11A-10039 - UUUGGACACCAGCGCGCUCA 20 11974
    BCL11A-10040 + GCCCGCGCGGCCUGGAAAGA 20 11975
    BCL11A-10041 - GAGUCCGCGGAGUCGGGAGA 20 11976
    BCL11A-10042 + CGGCGCAGGCCGGGGCCCGA 20 11977
    BCL11A-10043 - CGGGAGAGGGGCCGCGGCGA 20 11978
    BCL11A-10044 + UACAGCUCCGCAGCGGGCGA 20 11979
    BCL11A-10045 - AGCCGUGGGACCGGGAAGGA 20 11980
    BCL11A-10046 - GUGGGUGUGCGUACGGAGGA 20 11981
    BCL11A-10047 + UGGAGGGCUGCGGGUCCGGA 20 11982
    BCL11A-10048 + GCUGGGGAAGCGCGGGCGGA 20 11983
    BCL11A-10049 - AGAAAAUGGGGGGGUAGGGA 20 11984
    BCL11A-10050 - GGAGAGCCGUGGGACCGGGA 20 11985
    BCL11A-10051 - GAGCGCGGCGGCGGCGGGGA 20 11986
    BCL11A-10052 + GCGGGCGAGGGGAGGUGGGA 20 11987
    BCL11A-10053 + GAAUCCAGCCUAAGUUUGGA 20 11988
    BCL11A-10054 - CAAAAUAAUGAACAAUGCUA 20 11989
    BCL11A-10055 - AGGGGAAGUGGGUGUGCGUA 20 11990
    BCL11A-10056 - CGUAAGAAAAUGGGGGGGUA 20 11991
    BCL11A-10057 + CCUACCCCCCCAUUUUCUUA 20 11992
    BCL11A-10058 + UGUUCAUUAUUUUGCAAAAC 20 11993
    BCL11A-10059 + AAAAUAGAGCGAGAGUGCAC 20 11994
    BCL11A-10060 - GGGGAGAAAAGAGGUGAGAC 20 11995
    BCL11A-10061 - GGGAGAGGGGCCGCGGCGAC 20 11996
    BCL11A-10062 - GCCGUGGGACCGGGAAGGAC 20 11997
    BCL11A-10063 + CCCAAGGCCGAGCCAGGGAC 20 11998
    BCL11A-10064 + GCGGCCUGGAAAGAGGGGAC 20 11999
    BCL11A-10065 - GACGGGGAGAGCCGUGGGAC 20 12000
    BCL11A-10066 - GAACAACUCACAUGCAAACC 20 12001
    BCL11A-10067 + AAAUAGAGCGAGAGUGCACC 20 12002
    BCL11A-10068 + CCAAGGCCGAGCCAGGGACC 20 12003
    BCL11A-10069 + CGGCCUGGAAAGAGGGGACC 20 12004
    BCL11A-10070 - ACGGGGAGAGCCGUGGGACC 20 12005
    BCL11A-10071 - UGUCCGGGAGCAACUCUACC 20 12006
    BCL11A-10072 + CCCCACCAGCUCCCACCCCC 20 12007
    BCL11A-10073 + CACCGGGAGGCUGCAGCCCC 20 12008
    BCL11A-10074 - GGGGCUUUUACUUCGGCCCC 20 12009
    BCL11A-10075 - GCACUGUGGAAAGGGGCCCC 20 12010
    BCL11A-10076 + GUCUCACCUCUUUUCUCCCC 20 12011
    BCL11A-10077 - CGCCCGCGCUUCCCCAGCCC 20 12012
    BCL11A-10078 + GCACCGGGAGGCUGCAGCCC 20 12013
    BCL11A-10079 - UUGGGGGCGCCCUCGGGCCC 20 12014
    BCL11A-10080 - CUGCGCCGCCUGCCUCUCCC 20 12015
    BCL11A-10081 + AGUCUCACCUCUUUUCUCCC 20 12016
    BCL11A-10082 - AAGUCUAAAAAACGAUUCCC 20 12017
    BCL11A-10083 + AGCGCGGGCGGAGGGAAGCC 20 12018
    BCL11A-10084 - CCGCCCGCGCUUCCCCAGCC 20 12019
    BCL11A-10085 + GGCGCCCCCAAGGCCGAGCC 20 12020
    BCL11A-10086 + GCUCCCCGCGUGUGGACGCC 20 12021
    BCL11A-10087 + UCCGCGGACUCAGGAGCGCC 20 12022
    BCL11A-10088 + AGAGGCAGGCGGCGCAGGCC 20 12023
    BCL11A-10089 + CUCCAGGAGCCCGCGCGGCC 20 12024
    BCL11A-10090 - AGCCCGGGGCUGCAGCCUCC 20 12025
    BCL11A-10091 - UUCCAGGCCGCGCGGGCUCC 20 12026
    BCL11A-10092 + AAGCCAGGUAGAGUUGCUCC 20 12027
    BCL11A-10093 + AGGGCAGCGCCCAAGUCUCC 20 12028
    BCL11A-10094 - GCGUACGGAGGAGGGUGUCC 20 12029
    BCL11A-10095 - CAAGUCUAAAAAACGAUUCC 20 12030
    BCL11A-10096 + GCCGCGUCUCCCGUCCUUCC 20 12031
    BCL11A-10097 - CUCCCCGGUCCCCUCUUUCC 20 12032
    BCL11A-10098 + CCAAGUUACAGCUCCGCAGC 20 12033
    BCL11A-10099 + GAGCCGGCACAAAAGGCAGC 20 12034
    BCL11A-10100 - CUCACGGUCAAGUGUGCAGC 20 12035
    BCL11A-10101 + GGAGGGCAAGCGCGAGGAGC 20 12036
    BCL11A-9563 - CCGCGUGUGUGGGGGGGAGC 20 12037
    BCL11A-10102 - GCAAACCUGGGGGUGGGAGC 20 12038
    BCL11A-10103 - GGCCCCUGGCGUCCACACGC 20 12039
    BCL11A-10104 - AGUUUCCCGAGCGCAGCCGC 20 12040
    BCL11A-10105 + GCCCCGGGCUGGGGAAGCGC 20 12041
    BCL11A-10106 + CUCCGCGGACUCAGGAGCGC 20 12042
    BCL11A-10107 - CCCCUCUUUCCAGGCCGCGC 20 12043
    BCL11A-10108 + ACACUUGACCGUGAGCGCGC 20 12044
    BCL11A-10109 + CGGGGAGAGGCAGGCGGCGC 20 12045
    BCL11A-10110 + GAGAGGCAGGCGGCGCAGGC 20 12046
    BCL11A-10111 + AGAGGGGACCGGGGAGAGGC 20 12047
    BCL11A-10112 - GCAGCCCUCCAAACUUAGGC 20 12048
    BCL11A-10113 - GGAAGGACGGGAGACGCGGC 20 12049
    BCL11A-10114 - GGAGCGAGCGCGGCGGCGGC 20 12050
    BCL11A-10115 + GGGAGGCUGCAGCCCCGGGC 20 12051
    BCL11A-10116 + UUUUGCAAAACUGGCGGGGC 20 12052
    BCL11A-10117 + CAUUAUUUUGCAAAACUGGC 20 12053
    BCL11A-10118 + GACAAACACCCACCUCUGGC 20 12054
    BCL11A-10119 + GCCUAAGUUUGGAGGGCUGC 20 12055
    BCL11A-10120 + GGAACAAAAGGCGGCAGUGC 20 12056
    BCL11A-10121 - UGUCCCGCUGCCUUUUGUGC 20 12057
    BCL11A-10122 + UCUCCCGACUCCGCGGACUC 20 12058
    BCL11A-10123 + GCGGGACAAACACCCACCUC 20 12059
    BCL11A-10124 - UCGGCCUUGGGGGCGCCCUC 20 12060
    BCL11A-10125 - UUCUUUGCUGUCCUCUCCUC 20 12061
    BCL11A-10126 + CCGAGCCCGCGGCUGCGCUC 20 12062
    BCL11A-10127 - CCGAGCGCAGCCGCGGGCUC 20 12063
    BCL11A-10128 - GCUCCUGAGUCCGCGGAGUC 20 12064
    BCL11A-10129 + AGUUUGGAGGGCUGCGGGUC 20 12065
    BCL11A-10130 - UGCGUACGGAGGAGGGUGUC 20 12066
    BCL11A-10131 - GAGGCUCAGCUCUCAACUUC 20 12067
    BCL11A-10132 - AGACUUGGGCGCUGCCCUUC 20 12068
    BCL11A-10133 - GGCACUGCCGCCUUUUGUUC 20 12069
    BCL11A-10134 - ACGAUUCCCGGGGAGAAAAG 20 12070
    BCL11A-10135 - UCCCCACAAUAGUGAGAAAG 20 12071
    BCL11A-10136 + AGCGGCGGAAAGGAGGAAAG 20 12072
    BCL11A-10137 + AGCCCGCGCGGCCUGGAAAG 20 12073
    BCL11A-10138 - GAAAGUGGCACUGUGGAAAG 20 12074
    BCL11A-10139 + UUUCGAAAAGAGAAAUAAAG 20 12075
    BCL11A-10140 - GCGGCGGCGGGGAGGGGAAG 20 12076
    BCL11A-10141 + UCCCCGCGUGUGGACGCCAG 20 12077
    BCL11A-10142 - CCGCCUUUUGUUCCGGCCAG 20 12078
    BCL11A-10143 + UCCAAGUUACAGCUCCGCAG 20 12079
    BCL11A-10144 + GGAGCCGGCACAAAAGGCAG 20 12080
    BCL11A-10145 - GCUCACGGUCAAGUGUGCAG 20 12081
    BCL11A-10146 + CCCGCGCGGCCUGGAAAGAG 20 12082
    BCL11A-10147 - AGUCCGCGGAGUCGGGAGAG 20 12083
    BCL11A-10148 + ACAGCUCCGCAGCGGGCGAG 20 12084
    BCL11A-10149 + GGGAAACUUUGCCCGAGGAG 20 12085
    BCL11A-10150 - UGAGUCCGCGGAGUCGGGAG 20 12086
    BCL11A-10151 + GGAAAGAGGGGACCGGGGAG 20 12087
    BCL11A-10152 - AGCGCGGCGGCGGCGGGGAG 20 12088
    BCL11A-10153 + CUGGCGGGGCGGGGGGGGAG 20 12089
    BLC11A-10154 + CCCCAUUUUCUUACGGUGAG 20 12090
    BCL11A-10155 + GGAGGGAGCGCACGGCAACG 20 12091
    BCL11A-9741 + CCUGCUCCCCCCCACACACG 20 12092
    BCL11A-10156 - CGGCCCCUGGCGUCCACACG 20 12093
    BCL11A-10157 - ACCGGGAAGGACGGGAGACG 20 12094
    BCL11A-10158 - GGAGAGGGGCCGCGGCGACG 20 12095
    BCL11A-10159 + GGCCUGGAAAGAGGGGACCG 20 12096
    BCL11A-10160 - GCCCGCGCUUCCCCAGCCCG 20 12097
    BCL11A-10161 + AAGUAAAAGCCCCGAGCCCG 20 12098
    BCL11A-10162 + GCGGCGCAGGCCGGGGCCCG 20 12099
    BCL11A-10163 + CGCUCGGGAAACUUUGCCCG 20 12100
    BCL11A-10164 - AGUCUAAAAAACGAUUCCCG 20 12101
    BCL11A-10165 - AAGUUUCCCGAGCGCAGCCG 20 12102
    BCL11A-10166 - CGCGGCGACGGGGAGAGCCG 20 12103
    BCL11A-10167 + CCGCGGACUCAGGAGCGCCG 20 12104
    BCL11A-10168 + CACGGCUCUCCCCGUCGCCG 20 12105
    BCL11A-10169 + GAGGCAGGCGGCGCAGGCCG 20 12106
    BCL11A-10170 - CGGAGUCGGGAGAGGGGCCG 20 12107
    BCL11A-10171 + CGGCCCCUCUCCCGACUCCG 20 12108
    BCL11A-10172 - CCCCGGCGCUCCUGAGUCCG 20 12109
    BCL11A-10173 + AGCCCCGGGCUGGGGAAGCG 20 12110
    BCL11A-10174 - CCACACGCGGGGAGCGAGCG 20 12111
    BCL11A-10175 - GCCCCUGGCGUCCACACGCG 20 12112
    BCL11A-10176 + CAAGUCUCCAGGAGCCCGCG 20 12113
    BCL11A-10177 - UCCCCUCUUUCCAGGCCGCG 20 12114
    BCL11A-10178 + GGCGCGGGAGGGCAAGCGCG 20 12115
    BCL11A-10179 - GAGCGAGCGCGGCGGCGGCG 20 12116
    BCL11A-10180 + UUACAGCUCCGCAGCGGGCG 20 12117
    BCL11A-10181 + UUUGCAAAACUGGCGGGGCG 20 12118
    BCL11A-10182 + AUUAUUUUGCAAAACUGGCG 20 12119
    BCL11A-10183 - CGAGCGCAGCCGCGGGCUCG 20 12120
    BCL11A-10184 + CCUCUGGCCGGAACAAAAGG 20 12121
    BCL11A-10185 + GAAAUAAAGCGGCGGAAAGG 20 12122
    BCL11A-10186 + GGGGACCGGGGAGAGGCAGG 20 12123
    BCL11A-10187 + GGCGGAAAGGAGGAAAGAGG 20 12124
    BCL11A-10188 - CCUUUUGUUCCGGCCAGAGG 20 12125
    BCL11A-10189 - AGUGGGUGUGCGUACGGAGG 20 12126
    BCL11A-10190 + CCGCAGCGGGCGAGGGGAGG 20 12127
    BCL11A-10191 - GGAAGUGGGUGUGCGUACGG 20 12128
    BCL11A-10192 + CGCGGACUCAGGAGCGCCGG 20 12129
    BCL11A-10193 + CGAAAAGAGAAAUAAAGCGG 20 12130
    BCL11A-10194 - CACGCGGGGAGCGAGCGCGG 20 12131
    BLC11A-10195 - GCGGGGAGCGAGCGCGGCGG 20 12132
    BCL11A-10196 - GGGAGCGAGCGCGGCGGCGG 20 12133
    BCL11A-10197 + GGCUGGGGAAGCGCGGGCGG 20 12134
    BCL11A-10198 + UUGCAAAACUGGCGGGGCGG 20 12135
    BCL11A-10199 - GGGAGCUGGUGGGGAAAGGG 20 12136
    BCL11A-10200 - AAGAAAAUGGGGGGGUAGGG 20 12137
    BCL11A-10201 + UAGAGCGAGAGUGCACCGGG 20 12138
    BCL11A-10202 - ACGGUCAAGUGUGCAGCGGG 20 12139
    BCL11A-10203 + CCGGGCUGGGGAAGCGCGGG 20 12140
    BCL11A-10204 + UGCAAAACUGGCGGGGCGGG 20 12141
    BCL11A-10205 + GCUCCGCAGCGGGCGAGGGG 20 12142
    BCL11A-10206 - CGAGCGCGGCGGCGGCGGGG 20 12143
    BCL11A-10207 + GCAAAACUGGCGGGGCGGGG 20 12144
    BCL11A-10208 + AUUUUGCAAAACUGGCGGGG 20 12145
    BCL11A-10209 + CAAAACUGGCGGGGCGGGGG 20 12146
    BCL11A-10210 - CUCACAUGCAAACCUGGGGG 20 12147
    BCL11A-10211 - CUCACCGUAAGAAAAUGGGG 20 12148
    BCL11A-9577 - UAGAGUCCGCGUGUGUGGGG 20 12149
    BCL11A-10212 - ACUCACCGUAAGAAAAUGGG 20 12150
    BCL11A-10213 + AGCGGGCGAGGGGAGGUGGG 20 12151
    BCL11A-9769 - UUAGAGUCCGCGUGUGUGGG 20 12152
    BCL11A-10214 - CACUCACCGUAAGAAAAUGG 20 12153
    BCL11A-10215 + UCAUUAUUUUGCAAAACUGG 20 12154
    BCL11A-10216 - CAACUCACAUGCAAACCUGG 20 12155
    BCL11A-10217 - AACCUGGGGGUGGGAGCUGG 20 12156
    BCL11A-9578 - UUUAGAGUCCGCGUGUGUGG 20 12157
    BCL11A-10218 - GCUGCGGAGCUGUAACUUGG 20 12158
    BCL11A-10219 - GGUCCCUGGCUCGGCCUUGG 20 12159
    BCL11A-10220 + GGAAUCCAGCCUAAGUUUGG 20 12160
    BCL11A-10221 - CCACUCACCGUAAGAAAAUG 20 12161
    BCL11A-10222 - AUAGUGAGAAAGUGGCACUG 20 12162
    BCL11A-10223 - ACAACUCACAUGCAAACCUG 20 12163
    BCL11A-10224 - CCACCUCCCCUCGCCCGCUG 20 12164
    BCL11A-10225 + AGCCUAAGUUUGGAGGGCUG 20 12165
    BCL11A-10226 + GAGGCUGCAGCCCCGGGCUG 20 12166
    BCL11A-10227 + CCGCGCUCGCUCCCCGCGUG 20 12167
    BCL11A-10228 - CCUGGGGGUGGGAGCUGGUG 20 12168
    BCL11A-9581 - CAUUUUAGAGUCCGCGUGUG 20 12169
    BCL11A-9776 - UUUUAGAGUCCGCGUGUGUG 20 12170
    BCL11A-10229 + GCCACUUUCUCACUAUUGUG 20 12171
    BCL11A-10230 + GUGCCACUUUCUCACUAUUG 20 12172
    BCL11A-10231 - CGGUCCCUGGCUCGGCCUUG 20 12173
    BCL11A-10232 - CCCACUCACCGUAAGAAAAU 20 12174
    BCL11A-10233 - CCCGCUGCGGAGCUGUAACU 20 12175
    BCL11A-10234 - CGCGCGGGCUCCUGGAGACU 20 12176
    BCL11A-10235 - AACAACUCACAUGCAAACCU 20 12177
    BCL11A-10236 - CUCGGCCUUGGGGGCGCCCU 20 12178
    BCL11A-10237 - CCCGGUCCCUGGCUCGGCCU 20 12179
    BCL11A-10238 - UUUCUUUGCUGUCCUCUCCU 20 12180
    BCL11A-10239 + CCCGAGCCCGCGGCUGCGCU 20 12181
    BCL11A-10240 + GGAGGCUGCAGCCCCGGGCU 20 12182
    BCL11A-10241 - CCCGAGCGCAGCCGCGGGCU 20 12183
    BCL11A-10242 - CGGCGGCGGGGAGGGGAAGU 20 12184
    BCL11A-10243 - CGCUCCUGAGUCCGCGGAGU 20 12185
    BCL11A-10244 + CCCAUUUUCUUACGGUGAGU 20 12186
    BCL11A-10245 - GCGGCGACGGGGAGAGCCGU 20 12187
    BCL11A-10246 - CUUUUGUUCCGGCCAGAGGU 20 12188
    BCL11A-10247 + CGCAGCGGGCGAGGGGAGGU 20 12189
    BCL11A-10248 - CCGUAAGAAAAUGGGGGGGU 20 12190
    BCL11A-10249 - UCACAUGCAAACCUGGGGGU 20 12191
    BCL11A-10250 - ACCUGGGGGUGGGAGCUGGU 20 12192
    BCL11A-9586 - AUUUUAGAGUCCGCGUGUGU 20 12193
    BCL11A-10251 + UGCCACUUUCUCACUAUUGU 20 12194
    BCL11A-10252 - ACCCGCAGCCCUCCAAACUU 20 12195
    BCL11A-10253 - GGAGGCUCAGCUCUCAACUU 20 12196
    BCL11A-10254 - GCGCGGGCUCCUGGAGACUU 20 12197
    BCL11A-10255 - CGGGCUCGGGGCUUUUACUU 20 12198
    BCL11A-10256 - CCGGUCCCUGGCUCGGCCUU 20 12199
    BCL11A-10257 + CGCGGAAUCCAGCCUAAGUU 20 12200
    BCL11A-10258 - AAAGAGGUGAGACUGGCUUU 20 12201
  • Table 19A provides exemplary targeting domains for knocking down the BCL11A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 19A
    1st Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-10259 + GGCGUGGCCGGGAGAGAAGAA 21 12202
    BCL11A-10260 + UGGCGUGGCCGGGAGAGAAGAA 22 12203
    BCL11A-10261 + GUGGCGUGGCCGGGAGAGAAGAA 23 12204
    BCL11A-10262 + GGUGGCGUGGCCGGGAGAGAAGAA 24 12205
    BCL11A-10263 + CACGGCAAUGGUUCCAGA 18 12206
    BCL11A-10264 + ACACGGCAAUGGUUCCAGA 19 12207
    BCL11A-9557 + UACACGGCAAUGGUUCCAGA 20 12208
    BCL11A-10265 + AUACACGGCAAUGGUUCCAGA 21 12209
    BCL11A-10266 + CAUACACGGCAAUGGUUCCAGA 22 12210
    BCL11A-10267 + GCAUACACGGCAAUGGUUCCAGA 23 12211
    BCL11A-10268 + UGCAUACACGGCAAUGGUUCCAGA 24 12212
    BCL11A-6258 + UUAUUGGGUUACUUACGC 18 12213
    BCL11A-6259 + AUUAUUGGGUUACUUACGC 19 12214
    BCL11A-6260 + UAUUAUUGGGUUACUUACGC 20 12215
    BCL11A-6261 + CUAUUAUUGGGUUACUUACGC 21 12216
    BCL11A-6262 + ACUAUUAUUGGGUUACUUACGC 22 12217
    BCL11A-6263 + UACUAUUAUUGGGUUACUUACGC 23 12218
    BCL11A-6264 + UUACUAUUAUUGGGUUACUUACGC 24 12219
    BCL11A-10269 + GGGAGAGAAGAAAGGGGUGGC 21 12220
    BCL11A-10270 + CGGGAGAGAAGAAAGGGGUGGC 22 12221
    BCL11A-10271 + CCGGGAGAGAAGAAAGGGGUGGC 23 12222
    BCL11A-10272 + GCCGGGAGAGAAGAAAGGGGUGGC 24 12223
    BCL11A-6265 + UCCCGUUUGCUUAAGUGC 18 12224
    BCL11A-6266 + UUCCCGUUUGCUUAAGUGC 19 12225
    BCL11A-5352 + AUUCCCGUUUGCUUAAGUGC 20 12226
    BCL11A-6267 + AAUUCCCGUUUGCUUAAGUGC 21 12227
    BCL11A-6268 + GAAUUCCCGUUUGCUUAAGUGC 22 12228
    BCL11A-6269 + AGAAUUCCCGUUUGCUUAAGUGC 23 12229
    BCL11A-6270 + GAGAAUUCCCGUUUGCUUAAGUGC 24 12230
    BCL11A-10273 + CCUGCGAACUUGAACGUC 18 12231
    BCL11A-10274 + CCCUGCGAACUUGAACGUC 19 12232
    BCL11A-9570 + UCCCUGCGAACUUGAACGUC 20 12233
    BCL11A-10275 + GUCCCUGCGAACUUGAACGUC 21 12234
    BCL11A-10276 + CGUCCCUGCGAACUUGAACGUC 22 12235
    BCL11A-10277 + ACGUCCCUGCGAACUUGAACGUC 23 12236
    BCL11A-10278 + GACGUCCCUGCGAACUUGAACGUC 24 12237
    BCL11A-10279 + UACAAAGAUGGCGCAGGGAAG 21 12238
    BCL11A-10280 + AUACAAAGAUGGCGCAGGGAAG 22 12239
    BCL11A-10281 + AAUACAAAGAUGGCGCAGGGAAG 23 12240
    BCL11A-10282 + UAAUACAAAGAUGGCGCAGGGAAG 24 12241
    BCL11A-10283 + CGGUUCACAUCGGGAGAG 18 12242
    BCL11A-10284 + UCGGUUCACAUCGGGAGAG 19 12243
    BCL11A-10285 + CUCGGUUCACAUCGGGAGAG 20 12244
    BCL11A-10286 + GCUCGGUUCACAUCGGGAGAG 21 12245
    BCL11A-10287 + GGCUCGGUUCACAUCGGGAGAG 22 12246
    BCL11A-10288 + CGGCUCGGUUCACAUCGGGAGAG 23 12247
    BCL11A-10289 + ACGGCUCGGUUCACAUCGGGAGAG 24 12248
    BCL11A-10290 + AAUGGUUCCAGAUGGGAU 18 12249
    BCL11A-10291 + CAAUGGUUCCAGAUGGGAU 19 12250
    BCL11A-10292 + GCAAUGGUUCCAGAUGGGAU 20 12251
    BCL11A-10293 + GGCAAUGGUUCCAGAUGGGAU 21 12252
    BCL11A-10294 + CGGCAAUGGUUCCAGAUGGGAU 22 12253
    BCL11A-10295 + ACGGCAAUGGUUCCAGAUGGGAU 23 12254
    BCL11A-10296 + CACGGCAAUGGUUCCAGAUGGGAU 24 12255
    BCL11A-10297 + AACUUGAACGUCAGGAGU 18 12256
    BCL11A-10298 + GAACUUGAACGUCAGGAGU 19 12257
    BCL11A-10299 + CGAACUUGAACGUCAGGAGU 20 12258
    BCL11A-10300 + GCGAACUUGAACGUCAGGAGU 21 12259
    BCL11A-10301 + UGCGAACUUGAACGUCAGGAGU 22 12260
    BCL11A-10302 + CUGCGAACUUGAACGUCAGGAGU 23 12261
    BCL11A-10303 + CCUGCGAACUUGAACGUCAGGAGU 24 12262
    BCL11A-6304 - AACCCCAGCACUUAAGCAAAC 21 12263
    BCL11A-6305 - AAACCCCAGCACUUAAGCAAAC 22 12264
    BCL11A-6306 - CAAACCCCAGCACUUAAGCAAAC 23 12265
    BCL11A-6307 - GCAAACCCCAGCACUUAAGCAAAC 24 12266
    BCL11A-10304 - AAGCAAAAGCGAGGGGGAGAG 21 12267
    BCL11A-10305 - GAAGCAAAAGCGAGGGGGAGAG 22 12268
    BCL11A-10306 - AGAAGCAAAAGCGAGGGGGAGAG 23 12269
    BCL11A-10307 - UAGAAGCAAAAGCGAGGGGGAGAG 24 12270
  • Table 19B provides exemplary targeting domains for knocking down the BCL11A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 19B
    2nd Tier
    Target
    DNA Site SEQ
    gRNA Name Strand Targeting Domain Length ID NO:
    BCL11A-10308 + GUGGCCGGGAGAGAAGAA 18 12271
    BCL11A-10309 + CGUGGCCGGGAGAGAAGAA 19 12272
    BCL11A-9697 + GCGUGGCCGGGAGAGAAGAA 20 12273
    BCL11A-10310 + GUGGCAGGGGUGGGAGGA 18 12274
    BCL11A-10311 + GGUGGCAGGGGUGGGAGGA 19 12275
    BCL11A-10312 + GGGUGGCAGGGGUGGGAGGA 20 12276
    BCL11A-10313 + GGGGUGGCAGGGGUGGGAGGA 21 12277
    BCL11A-10314 + AGGGGUGGCAGGGGUGGGAGGA 22 12278
    BCL11A-10315 + AAGGGGUGGCAGGGGUGGGAGGA 23 12279
    BCL11A-10316 + AAAGGGGUGGCAGGGGUGGGAGGA 24 12280
    BCL11A-10317 + UAAUUAUUAUUACUAUUA 18 12281
    BCL11A-10318 + AUAAUUAUUAUUACUAUUA 19 12282
    BCL11A-10319 + AAUAAUUAUUAUUACUAUUA 20 12283
    BCL11A-10320 + UAAUAAUUAUUAUUACUAUUA 21 12284
    BCL11A-10321 + UUAAUAAUUAUUAUUACUAUUA 22 12285
    BCL11A-10322 + AUUAAUAAUUAUUAUUACUAUUA 23 12286
    BCL11A-10323 + UAUUAAUAAUUAUUAUUACUAUUA 24 12287
    BCL11A-10324 + AGAGAAGAAAGGGGUGGC 18 12288
    BCL11A-10325 + GAGAGAAGAAAGGGGUGGC 19 12289
    BCL11A-9726 + GGAGAGAAGAAAGGGGUGGC 20 12290
    BCL11A-10326 + AAAGAUGGCGCAGGGAAG 18 12291
    BCL11A-10327 + CAAAGAUGGCGCAGGGAAG 19 12292
    BCL11A-10328 + ACAAAGAUGGCGCAGGGAAG 20 12293
    BCL11A-6350 - CCCAGCACUUAAGCAAAC 18 12294
    BCL11A-6351 - CCCCAGCACUUAAGCAAAC 19 12295
    BCL11A-5458 - ACCCCAGCACUUAAGCAAAC 20 12296
    BCL11A-10329 - UUCACGAGAAAAACCUCC 18 12297
    BCL11A-10330 - UUUCACGAGAAAAACCUCC 19 12298
    BCL11A-10331 - UUUUCACGAGAAAAACCUCC 20 12299
    BCL11A-10332 - UUUUUCACGAGAAAAACCUCC 21 12300
    BCL11A-10333 - AUUUUUCACGAGAAAAACCUCC 22 12301
    BCL11A-10334 - AAUUUUUCACGAGAAAAACCUCC 23 12302
    BCL11A-10335 - AAAUUUUUCACGAGAAAAACCUCC 24 12303
    BCL11A-10336 - UGAUGAAGAUAUUUUCUC 18 12304
    BCL11A-10337 - CUGAUGAAGAUAUUUUCUC 19 12305
    BCL11A-9731 - ACUGAUGAAGAUAUUUUCUC 20 12306
    BCL11A-10338 - CACUGAUGAAGAUAUUUUCUC 21 12307
    BCL11A-10339 - GCACUGAUGAAGAUAUUUUCUC 22 12308
    BCL11A-10340 - GGCACUGAUGAAGAUAUUUUCUC 23 12309
    BCL11A-10341 - AGGCACUGAUGAAGAUAUUUUCUC 24 12310
    BCL11A-10342 - CAAAAGCGAGGGGGAGAG 18 12311
    BCL11A-10343 - GCAAAAGCGAGGGGGAGAG 19 12312
    BCL11A-4583 - AGCAAAAGCGAGGGGGAGAG 20 12313
    BCL11A-10344 - UAUUAUUUCUAAUUUAUU 18 12314
    BCL11A-10345 - GUAUUAUUUCUAAUUUAUU 19 12315
    BCL11A-10346 - UGUAUUAUUUCUAAUUUAUU 20 12316
    BCL11A-10347 - UUGUAUUAUUUCUAAUUUAUU 21 12317
    BCL11A-10348 - UUUGUAUUAUUUCUAAUUUAUU 22 12318
    BCL11A-10349 - CUUUGUAUUAUUUCUAAUUUAUU 23 12319
    BCL11A-10350 - UCUUUGUAUUAUUUCUAAUUUAUU 24 12320
    BCL11A-10351 - UUGAAUAAUCUUUCAUUU 18 12321
    BCL11A-10352 - UUUGAAUAAUCUUUCAUUU 19 12322
    BCL11A-10353 - UUUUGAAUAAUCUUUCAUUU 20 12323
    BCL11A-10354 - UUUUUGAAUAAUCUUUCAUUU 21 12324
    BCL11A-10355 - UUUUUUGAAUAAUCUUUCAUUU 22 12325
    BCL11A-10356 - CUUUUUUGAAUAAUCUUUCAUUU 23 12326
    BCL11A-10357 - UCUUUUUUGAAUAAUCUUUCAUUU 24 12327
  • Table 19C provides exemplary targeting domains for knocking down the BCL11A gene selected according to the third tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used
  • TABLE 19C
    3rd Tier
    Target
    DNA Site SEQ
    gRNA Name Strand Targeting Domain Length ID NO:
    BCL11A-10358 + AAAAAAAAAAAAAAAAAA 18 12328
    BCL11A-10359 + AAAAAAAAAAAAAAAAAAA 19 12329
    BCL11A-4899 + AAAAAAAAAAAAAAAAAAAA 20 12330
    BCL11A-10360 + AAAAAAAAAAAAAAAAAAAAA 21 12331
    BCL11A-10361 + AAAAAAAAAAAAAAAAAAAAAA 22 12332
    BCL11A-10362 + AAAAAAAAAAAAAAAAAAAAAAA 23 12333
    BCL11A-10363 + AAAAAAAAAAAAAAAAAAAAAAAA 24 12334
    BCL11A-10364 + CAGGGGCUGGACAUGAAA 18 12335
    BCL11A-10365 + UCAGGGGCUGGACAUGAAA 19 12336
    BCL11A-10366 + AUCAGGGGCUGGACAUGAAA 20 12337
    BCL11A-10367 + CAUCAGGGGCUGGACAUGAAA 21 12338
    BCL11A-10368 + ACAUCAGGGGCUGGACAUGAAA 22 12339
    BCL11A-10369 + CACAUCAGGGGCUGGACAUGAAA 23 12340
    BCL11A-10370 + ACACAUCAGGGGCUGGACAUGAAA 24 12341
    BCL11A-10371 + ACACACGCGGACUCUAAA 18 12342
    BCL11A-10372 + CACACACGCGGACUCUAAA 19 12343
    BCL11A-10373 + CCACACACGCGGACUCUAAA 20 12344
    BCL11A-10374 + CCCACACACGCGGACUCUAAA 21 12345
    BCL11A-10375 + CCCCACACACGCGGACUCUAAA 22 12346
    BCL11A-10376 + CCCCCACACACGCGGACUCUAAA 23 12347
    BCL11A-10377 + CCCCCCACACACGCGGACUCUAAA 24 12348
    BCL11A-10378 + AGAGGGAGAGAGAGAGAA 18 12349
    BCL11A-10379 + AAGAGGGAGAGAGAGAGAA 19 12350
    BCL11A-4921 + AAAGAGGGAGAGAGAGAGAA 20 12351
    BCL11A-10380 + AAAAGAGGGAGAGAGAGAGAA 21 12352
    BCL11A-10381 + AAAAAGAGGGAGAGAGAGAGAA 22 12353
    BCL11A-10382 + AAAAAAGAGGGAGAGAGAGAGAA 23 12354
    BCL11A-10383 + AAAAAAAGAGGGAGAGAGAGAGAA 24 12355
    BCL11A-10384 + AGGGCGAGCAGGAGAGAA 18 12356
    BCL11A-10385 + CAGGGCGAGCAGGAGAGAA 19 12357
    BCL11A-4422 + GCAGGGCGAGCAGGAGAGAA 20 12358
    BCL11A-10386 + GGCAGGGCGAGCAGGAGAGAA 21 12359
    BCL11A-10387 + GGGCAGGGCGAGCAGGAGAGAA 22 12360
    BCL11A-10388 + UGGGCAGGGCGAGCAGGAGAGAA 23 12361
    BCL11A-10389 + AUGGGCAGGGCGAGCAGGAGAGAA 24 12362
    BCL11A-10390 + GAGAAGGGGAGGAGGGAA 18 12363
    BCL11A-10391 + AGAGAAGGGGAGGAGGGAA 19 12364
    BCL11A-4404 + GAGAGAAGGGGAGGAGGGAA 20 12365
    BCL11A-10392 + GGAGAGAAGGGGAGGAGGGAA 21 12366
    BCL11A-10393 + AGGAGAGAAGGGGAGGAGGGAA 22 12367
    BCL11A-10394 + CAGGAGAGAAGGGGAGGAGGGAA 23 12368
    BCL11A-10395 + GCAGGAGAGAAGGGGAGGAGGGAA 24 12369
    BCL11A-10396 + ACGACGGCUCGGUUCACA 18 12370
    BCL11A-10397 + GACGACGGCUCGGUUCACA 19 12371
    BCL11A-10398 + GGACGACGGCUCGGUUCACA 20 12372
    BCL11A-10399 + CGGACGACGGCUCGGUUCACA 21 12373
    BCL11A-10400 + GCGGACGACGGCUCGGUUCACA 22 12374
    BCL11A-10401 + GGCGGACGACGGCUCGGUUCACA 23 12375
    BCL11A-10402 + GGGCGGACGACGGCUCGGUUCACA 24 12376
    BCL11A-10403 + AAGGGGAAGCUCACACCA 18 12377
    BCL11A-10404 + GAAGGGGAAGCUCACACCA 19 12378
    BCL11A-10405 + GGAAGGGGAAGCUCACACCA 20 12379
    BCL11A-10406 + GGGAAGGGGAAGCUCACACCA 21 12380
    BCL11A-10407 + AGGGAAGGGGAAGCUCACACCA 22 12381
    BCL11A-10408 + GAGGGAAGGGGAAGCUCACACCA 23 12382
    BCL11A-10409 + GGAGGGAAGGGGAAGCUCACACCA 24 12383
    BCL11A-10410 + AGAAAGAAGGAGACUCCA 18 12384
    BCL11A-10411 + UAGAAAGAAGGAGACUCCA 19 12385
    BCL11A-10412 + UUAGAAAGAAGGAGACUCCA 20 12386
    BCL11A-10413 + GUUAGAAAGAAGGAGACUCCA 21 12387
    BCL11A-10414 + GGUUAGAAAGAAGGAGACUCCA 22 12388
    BCL11A-10415 + GGGUUAGAAAGAAGGAGACUCCA 23 12389
    BCL11A-10416 + CGGGUUAGAAAGAAGGAGACUCCA 24 12390
    BCL11A-10417 + GGCUCACCAGUGGCCGCA 18 12391
    BCL11A-10418 + GGGCUCACCAGUGGCCGCA 19 12392
    BCL11A-10419 + CGGGCUCACCAGUGGCCGCA 20 12393
    BCL11A-10420 + GCGGGCUCACCAGUGGCCGCA 21 12394
    BCL11A-10421 + CGCGGGCUCACCAGUGGCCGCA 22 12395
    BCL11A-10422 + CCGCGGGCUCACCAGUGGCCGCA 23 12396
    BCL11A-10423 + GCCGCGGGCUCACCAGUGGCCGCA 24 12397
    BCL11A-10424 + UAAUACAAAGAUGGCGCA 18 12398
    BCL11A-10425 + AUAAUACAAAGAUGGCGCA 19 12399
    BCL11A-9702 + AAUAAUACAAAGAUGGCGCA 20 12400
    BCL11A-10426 + AAAUAAUACAAAGAUGGCGCA 21 12401
    BCL11A-10427 + GAAAUAAUACAAAGAUGGCGCA 22 12402
    BCL11A-10428 + AGAAAUAAUACAAAGAUGGCGCA 23 12403
    BCL11A-10429 + UAGAAAUAAUACAAAGAUGGCGCA 24 12404
    BCL11A-10430 + AAAAAAAAAAAAAAAAGA 18 12405
    BCL11A-10431 + AAAAAAAAAAAAAAAAAGA 19 12406
    BCL11A-4527 + AAAAAAAAAAAAAAAAAAGA 20 12407
    BCL11A-10432 + AAAAAAAAAAAAAAAAAAAGA 21 12408
    BCL11A-10433 + AAAAAAAAAAAAAAAAAAAAGA 22 12409
    BCL11A-10434 + AAAAAAAAAAAAAAAAAAAAAGA 23 12410
    BCL11A-10435 + AAAAAAAAAAAAAAAAAAAAAAGA 24 12411
    BCL11A-10436 + AGAGCCGGGUUAGAAAGA 18 12412
    BCL11A-10437 + GAGAGCCGGGUUAGAAAGA 19 12413
    BCL11A-9708 + GGAGAGCCGGGUUAGAAAGA 20 12414
    BCL11A-10438 + GGGAGAGCCGGGUUAGAAAGA 21 12415
    BCL11A-10439 + CGGGAGAGCCGGGUUAGAAAGA 22 12416
    BCL11A-10440 + UCGGGAGAGCCGGGUUAGAAAGA 23 12417
    BCL11A-10441 + AUCGGGAGAGCCGGGUUAGAAAGA 24 12418
    BCL11A-10442 + CGUGGCCGGGAGAGAAGA 18 12419
    BCL11A-10443 + GCGUGGCCGGGAGAGAAGA 19 12420
    BCL11A-10444 + GGCGUGGCCGGGAGAGAAGA 20 12421
    BCL11A-10445 + UGGCGUGGCCGGGAGAGAAGA 21 12422
    BCL11A-10446 + GUGGCGUGGCCGGGAGAGAAGA 22 12423
    BCL11A-10447 + GGUGGCGUGGCCGGGAGAGAAGA 23 12424
    BCL11A-10448 + CGGUGGCGUGGCCGGGAGAGAAGA 24 12425
    BCL11A-10449 + AGAGAGAGAGAAGAGAGA 18 12426
    BCL11A-10450 + GAGAGAGAGAGAAGAGAGA 19 12427
    BCL11A-4845 + GGAGAGAGAGAGAAGAGAGA 20 12428
    BCL11A-10451 + GGGAGAGAGAGAGAAGAGAGA 21 12429
    BCL11A-10452 + AGGGAGAGAGAGAGAAGAGAGA 22 12430
    BCL11A-10453 + GAGGGAGAGAGAGAGAAGAGAGA 23 12431
    BCL11A-10454 + AGAGGGAGAGAGAGAGAAGAGAGA 24 12432
    BCL11A-10455 + UAGAGGGAGAGAGAGAGA 18 12433
    BCL11A-10456 + AUAGAGGGAGAGAGAGAGA 19 12434
    BCL11A-10457 + GAUAGAGGGAGAGAGAGAGA 20 12435
    BCL11A-10458 + AGAUAGAGGGAGAGAGAGAGA 21 12436
    BCL11A-10459 + GAGAUAGAGGGAGAGAGAGAGA 22 12437
    BCL11A-10460 + AGAGAUAGAGGGAGAGAGAGAGA 23 12438
    BCL11A-10461 + GAGAGAUAGAGGGAGAGAGAGAGA 24 12439
    BCL11A-10462 + GAUAGAGGGAGAGAGAGA 18 12440
    BCL11A-10463 + AGAUAGAGGGAGAGAGAGA 19 12441
    BCL11A-10464 + GAGAUAGAGGGAGAGAGAGA 20 12442
    BCL11A-10465 + AGAGAUAGAGGGAGAGAGAGA 21 12443
    BCL11A-10466 + GAGAGAUAGAGGGAGAGAGAGA 22 12444
    BCL11A-10467 + AGAGAGAUAGAGGGAGAGAGAGA 23 12445
    BCL11A-10468 + AAGAGAGAUAGAGGGAGAGAGAGA 24 12446
    BCL11A-10469 + AAAAAAGAGGGAGAGAGA 18 12447
    BCL11A-10470 + AAAAAAAGAGGGAGAGAGA 19 12448
    BCL11A-4911 + AAAAAAAAGAGGGAGAGAGA 20 12449
    BCL11A-10471 + AAAAAAAAAGAGGGAGAGAGA 21 12450
    BCL11A-10472 + AAAAAAAAAAGAGGGAGAGAGA 22 12451
    BCL11A-10473 + AAAAAAAAAAAGAGGGAGAGAGA 23 12452
    BCL11A-10474 + AAAAAAAAAAAAGAGGGAGAGAGA 24 12453
    BCL11A-10475 + GAGAUAGAGGGAGAGAGA 18 12454
    BCL11A-10476 + AGAGAUAGAGGGAGAGAGA 19 12455
    BCL11A-10477 + GAGAGAUAGAGGGAGAGAGA 20 12456
    BCL11A-10478 + AGAGAGAUAGAGGGAGAGAGA 21 12457
    BCL11A-10479 + AAGAGAGAUAGAGGGAGAGAGA 22 12458
    BCL11A-10480 + GAAGAGAGAUAGAGGGAGAGAGA 23 12459
    BCL11A-10481 + AGAAGAGAGAUAGAGGGAGAGAGA 24 12460
    BCL11A-10482 + CAGGGCGAGCAGGAGAGA 18 12461
    BCL11A-10483 + GCAGGGCGAGCAGGAGAGA 19 12462
    BCL11A-4464 + GGCAGGGCGAGCAGGAGAGA 20 12463
    BCL11A-10484 + GGGCAGGGCGAGCAGGAGAGA 21 12464
    BCL11A-10485 + UGGGCAGGGCGAGCAGGAGAGA 22 12465
    BCL11A-10486 + AUGGGCAGGGCGAGCAGGAGAGA 23 12466
    BCL11A-10487 + CAUGGGCAGGGCGAGCAGGAGAGA 24 12467
    BCL11A-10488 + AAAAAAAAGAGGGAGAGA 18 12468
    BCL11A-10489 + AAAAAAAAAGAGGGAGAGA 19 12469
    BCL11A-4909 + AAAAAAAAAAGAGGGAGAGA 20 12470
    BCL11A-10490 + AAAAAAAAAAAGAGGGAGAGA 21 12471
    BCL11A-10491 + AAAAAAAAAAAAGAGGGAGAGA 22 12472
    BCL11A-10492 + AAAAAAAAAAAAAGAGGGAGAGA 23 12473
    BCL11A-10493 + AAAAAAAAAAAAAAGAGGGAGAGA 24 12474
    BCL11A-10494 + GAGAGAUAGAGGGAGAGA 18 12475
    BCL11A-10495 + AGAGAGAUAGAGGGAGAGA 19 12476
    BCL11A-10496 + AAGAGAGAUAGAGGGAGAGA 20 12477
    BCL11A-10497 + GAAGAGAGAUAGAGGGAGAGA 21 12478
    BCL11A-10498 + AGAAGAGAGAUAGAGGGAGAGA 22 12479
    BCL11A-10499 + GAGAAGAGAGAUAGAGGGAGAGA 23 12480
    BCL11A-10500 + AGAGAAGAGAGAUAGAGGGAGAGA 24 12481
    BCL11A-10501 + AAAAAAAAAAGAGGGAGA 18 12482
    BCL11A-10502 + AAAAAAAAAAAGAGGGAGA 19 12483
    BCL11A-4907 + AAAAAAAAAAAAGAGGGAGA 20 12484
    BCL11A-10503 + AAAAAAAAAAAAAGAGGGAGA 21 12485
    BCL11A-10504 + AAAAAAAAAAAAAAGAGGGAGA 22 12486
    BCL11A-10505 + AAAAAAAAAAAAAAAGAGGGAGA 23 12487
    BCL11A-10506 + AAAAAAAAAAAAAAAAGAGGGAGA 24 12488
    BCL11A-10507 + AAGAGAGAUAGAGGGAGA 18 12489
    BCL11A-10508 + GAAGAGAGAUAGAGGGAGA 19 12490
    BCL11A-10509 + AGAAGAGAGAUAGAGGGAGA 20 12491
    BCL11A-10510 + GAGAAGAGAGAUAGAGGGAGA 21 12492
    BCL11A-10511 + AGAGAAGAGAGAUAGAGGGAGA 22 12493
    BCL11A-10512 + GAGAGAAGAGAGAUAGAGGGAGA 23 12494
    BCL11A-10513 + AGAGAGAAGAGAGAUAGAGGGAGA 24 12495
    BCL11A-10514 + AGAGAGAAGAGAGAUAGA 18 12496
    BCL11A-10515 + GAGAGAGAAGAGAGAUAGA 19 12497
    BCL11A-9709 + AGAGAGAGAAGAGAGAUAGA 20 12498
    BCL11A-10516 + GAGAGAGAGAAGAGAGAUAGA 21 12499
    BCL11A-10517 + AGAGAGAGAGAAGAGAGAUAGA 22 12500
    BCL11A-10518 + GAGAGAGAGAGAAGAGAGAUAGA 23 12501
    BCL11A-10519 + GGAGAGAGAGAGAAGAGAGAUAGA 24 12502
    BCL11A-10520 + CGGGAGAGCCGGGUUAGA 18 12503
    BCL11A-10521 + UCGGGAGAGCCGGGUUAGA 19 12504
    BCL11A-10522 + AUCGGGAGAGCCGGGUUAGA 20 12505
    BCL11A-10523 + CAUCGGGAGAGCCGGGUUAGA 21 12506
    BCL11A-10524 + ACAUCGGGAGAGCCGGGUUAGA 22 12507
    BCL11A-10525 + CACAUCGGGAGAGCCGGGUUAGA 23 12508
    BCL11A-10526 + UCACAUCGGGAGAGCCGGGUUAGA 24 12509
    BCL11A-10527 + GGGGGAGGGGCGGGCCGA 18 12510
    BCL11A-10528 + CGGGGGAGGGGCGGGCCGA 19 12511
    BCL11A-4648 + CCGGGGGAGGGGCGGGCCGA 20 12512
    BCL11A-10529 + CCCGGGGGAGGGGCGGGCCGA 21 12513
    BCL11A-10530 + CCCCGGGGGAGGGGCGGGCCGA 22 12514
    BCL11A-10531 + CCCCCGGGGGAGGGGCGGGCCGA 23 12515
    BCL11A-10532 + GCCCCCGGGGGAGGGGCGGGCCGA 24 12516
    BCL11A-10533 + UGGGCAGGGCGAGCAGGA 18 12517
    BCL11A-10534 + AUGGGCAGGGCGAGCAGGA 19 12518
    BCL11A-10535 + CAUGGGCAGGGCGAGCAGGA 20 12519
    BCL11A-10536 + ACAUGGGCAGGGCGAGCAGGA 21 12520
    BCL11A-10537 + AACAUGGGCAGGGCGAGCAGGA 22 12521
    BCL11A-10538 + AAACAUGGGCAGGGCGAGCAGGA 23 12522
    BCL11A-10539 + AAAACAUGGGCAGGGCGAGCAGGA 24 12523
    BCL11A-10540 + CAGGAGAGAAGGGGAGGA 18 12524
    BCL11A-10541 + GCAGGAGAGAAGGGGAGGA 19 12525
    BCL11A-4584 + AGCAGGAGAGAAGGGGAGGA 20 12526
    BCL11A-10542 + GAGCAGGAGAGAAGGGGAGGA 21 12527
    BCL11A-10543 + CGAGCAGGAGAGAAGGGGAGGA 22 12528
    BCL11A-10544 + GCGAGCAGGAGAGAAGGGGAGGA 23 12529
    BCL11A-10545 + GGCGAGCAGGAGAGAAGGGGAGGA 24 12530
    BCL11A-10546 + AAAAAAAAAAAAGAGGGA 18 12531
    BCL11A-10547 + AAAAAAAAAAAAAGAGGGA 19 12532
    BCL11A-4905 + AAAAAAAAAAAAAAGAGGGA 20 12533
    BCL11A-10548 + AAAAAAAAAAAAAAAGAGGGA 21 12534
    BCL11A-10549 + AAAAAAAAAAAAAAAAGAGGGA 22 12535
    BCL11A-10550 + AAAAAAAAAAAAAAAAAGAGGGA 23 12536
    BCL11A-10551 + AAAAAAAAAAAAAAAAAAGAGGGA 24 12537
    BCL11A-10552 + AGAAGAGAGAUAGAGGGA 18 12538
    BCL11A-10553 + GAGAAGAGAGAUAGAGGGA 19 12539
    BCL11A-10554 + AGAGAAGAGAGAUAGAGGGA 20 12540
    BCL11A-10555 + GAGAGAAGAGAGAUAGAGGGA 21 12541
    BCL11A-10556 + AGAGAGAAGAGAGAUAGAGGGA 22 12542
    BCL11A-10557 + GAGAGAGAAGAGAGAUAGAGGGA 23 12543
    BCL11A-10558 + AGAGAGAGAAGAGAGAUAGAGGGA 24 12544
    BCL11A-10559 + AGAGAAGGGGAGGAGGGA 18 12545
    BCL11A-10560 + GAGAGAAGGGGAGGAGGGA 19 12546
    BCL11A-4459 + GGAGAGAAGGGGAGGAGGGA 20 12547
    BCL11A-10561 + AGGAGAGAAGGGGAGGAGGGA 21 12548
    BCL11A-10562 + CAGGAGAGAAGGGGAGGAGGGA 22 12549
    BCL11A-10563 + GCAGGAGAGAAGGGGAGGAGGGA 23 12550
    BCL11A-10564 + AGCAGGAGAGAAGGGGAGGAGGGA 24 12551
    BCL11A-10565 + GCGGUGGCGUGGCCGGGA 18 12552
    BCL11A-10566 + GGCGGUGGCGUGGCCGGGA 19 12553
    BCL11A-10567 + CGGCGGUGGCGUGGCCGGGA 20 12554
    BCL11A-10568 + GCGGCGGUGGCGUGGCCGGGA 21 12555
    BCL11A-10569 + CGCGGCGGUGGCGUGGCCGGGA 22 12556
    BCL11A-10570 + CCGCGGCGGUGGCGUGGCCGGGA 23 12557
    BCL11A-10571 + GCCGCGGCGGUGGCGUGGCCGGGA 24 12558
    BCL11A-10572 + AGGGGCGGGCCGAGGGGA 18 12559
    BCL11A-10573 + GAGGGGCGGGCCGAGGGGA 19 12560
    BCL11A-4461 + GGAGGGGCGGGCCGAGGGGA 20 12561
    BCL11A-10574 + GGGAGGGGCGGGCCGAGGGGA 21 12562
    BCL11A-10575 + GGGGAGGGGCGGGCCGAGGGGA 22 12563
    BCL11A-10576 + GGGGGAGGGGCGGGCCGAGGGGA 23 12564
    BCL11A-10577 + CGGGGGAGGGGCGGGCCGAGGGGA 24 12565
    BCL11A-10578 + CAAUGGCCAGUGCGGGGA 18 12566
    BCL11A-10579 + CCAAUGGCCAGUGCGGGGA 19 12567
    BCL11A-9558 + GCCAAUGGCCAGUGCGGGGA 20 12568
    BCL11A-10580 + AGCCAAUGGCCAGUGCGGGGA 21 12569
    BCL11A-10581 + AAGCCAAUGGCCAGUGCGGGGA 22 12570
    BCL11A-10582 + CAAGCCAAUGGCCAGUGCGGGGA 23 12571
    BCL11A-10583 + ACAAGCCAAUGGCCAGUGCGGGGA 24 12572
    BCL11A-10584 + GUCAGGAGUCUGGAUGGA 18 12573
    BCL11A-10585 + CGUCAGGAGUCUGGAUGGA 19 12574
    BCL11A-10586 + ACGUCAGGAGUCUGGAUGGA 20 12575
    BCL11A-10587 + AACGUCAGGAGUCUGGAUGGA 21 12576
    BCL11A-10588 + GAACGUCAGGAGUCUGGAUGGA 22 12577
    BCL11A-10589 + UGAACGUCAGGAGUCUGGAUGGA 23 12578
    BCL11A-10590 + UUGAACGUCAGGAGUCUGGAUGGA 24 12579
    BCL11A-10591 + AGAGAGAGAAGAGAGAUA 18 12580
    BCL11A-10592 + GAGAGAGAGAAGAGAGAUA 19 12581
    BCL11A-10593 + AGAGAGAGAGAAGAGAGAUA 20 12582
    BCL11A-10594 + GAGAGAGAGAGAAGAGAGAUA 21 12583
    BCL11A-10595 + GGAGAGAGAGAGAAGAGAGAUA 22 12584
    BCL11A-10596 + GGGAGAGAGAGAGAAGAGAGAUA 23 12585
    BCL11A-10597 + AGGGAGAGAGAGAGAAGAGAGAUA 24 12586
    BCL11A-10598 + GACAGAGACACACAAAAC 18 12587
    BCL11A-10599 + GGACAGAGACACACAAAAC 19 12588
    BCL11A-10600 + UGGACAGAGACACACAAAAC 20 12589
    BCL11A-10601 + AUGGACAGAGACACACAAAAC 21 12590
    BCL11A-10602 + GAUGGACAGAGACACACAAAAC 22 12591
    BCL11A-10603 + GGAUGGACAGAGACACACAAAAC 23 12592
    BCL11A-10604 + UGGAUGGACAGAGACACACAAAAC 24 12593
    BCL11A-10605 + CGUGACGUCCCUGCGAAC 18 12594
    BCL11A-10606 + ACGUGACGUCCCUGCGAAC 19 12595
    BCL11A-10607 + GACGUGACGUCCCUGCGAAC 20 12596
    BCL11A-10608 + GGACGUGACGUCCCUGCGAAC 21 12597
    BCL11A-10609 + CGGACGUGACGUCCCUGCGAAC 22 12598
    BCL11A-10610 + GCGGACGUGACGUCCCUGCGAAC 23 12599
    BCL11A-10611 + UGCGGACGUGACGUCCCUGCGAAC 24 12600
    BCL11A-10612 + CUGCUCCCCCCCACACAC 18 12601
    BCL11A-10613 + CCUGCUCCCCCCCACACAC 19 12602
    BCL11A-10614 + CCCUGCUCCCCCCCACACAC 20 12603
    BCL11A-10615 + GCCCUGCUCCCCCCCACACAC 21 12604
    BCL11A-10616 + CGCCCUGCUCCCCCCCACACAC 22 12605
    BCL11A-10617 + GCGCCCUGCUCCCCCCCACACAC 23 12606
    BCL11A-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 12607
    BCL11A-10619 + UGGACAUGAAAAAGAGAC 18 12608
    BCL11A-10620 + CUGGACAUGAAAAAGAGAC 19 12609
    BCL11A-10621 + GCUGGACAUGAAAAAGAGAC 20 12610
    BCL11A-10622 + GGCUGGACAUGAAAAAGAGAC 21 12611
    BCL11A-10623 + GGGCUGGACAUGAAAAAGAGAC 22 12612
    BCL11A-10624 + GGGGCUGGACAUGAAAAAGAGAC 23 12613
    BCL11A-10625 + AGGGGCUGGACAUGAAAAAGAGAC 24 12614
    BCL11A-10626 + ACACAUCAGGGGCUGGAC 18 12615
    BCL11A-10627 + CACACAUCAGGGGCUGGAC 19 12616
    BCL11A-10628 + ACACACAUCAGGGGCUGGAC 20 12617
    BCL11A-10629 + GACACACAUCAGGGGCUGGAC 21 12618
    BCL11A-10630 + GGACACACAUCAGGGGCUGGAC 22 12619
    BCL11A-10631 + UGGACACACAUCAGGGGCUGGAC 23 12620
    BCL11A-10632 + AUGGACACACAUCAGGGGCUGGAC 24 12621
    BCL11A-6411 + UAUUAUUGGGUUACUUAC 18 12622
    BCL11A-6412 + CUAUUAUUGGGUUACUUAC 19 12623
    BCL11A-6413 + ACUAUUAUUGGGUUACUUAC 20 12624
    BCL11A-6414 + UACUAUUAUUGGGUUACUUAC 21 12625
    BCL11A-6415 + UUACUAUUAUUGGGUUACUUAC 22 12626
    BCL11A-6416 + AUUACUAUUAUUGGGUUACUUAC 23 12627
    BCL11A-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 12628
    BCL11A-10633 + AAAAUGGCAAAAGCCCCC 18 12629
    BCL11A-10634 + AAAAAUGGCAAAAGCCCCC 19 12630
    BCL11A-10635 + AAAAAAUGGCAAAAGCCCCC 20 12631
    BCL11A-10636 + AAAAAAAUGGCAAAAGCCCCC 21 12632
    BCL11A-10637 + GAAAAAAAUGGCAAAAGCCCCC 22 12633
    BCL11A-10638 + UGAAAAAAAUGGCAAAAGCCCCC 23 12634
    BCL11A-10639 + AUGAAAAAAAUGGCAAAAGCCCCC 24 12635
    BCL11A-10640 + ACGCCAGACGCGGCCCCC 18 12636
    BCL11A-10641 + GACGCCAGACGCGGCCCCC 19 12637
    BCL11A-4456 + GGACGCCAGACGCGGCCCCC 20 12638
    BCL11A-10642 + CGGACGCCAGACGCGGCCCCC 21 12639
    BCL11A-10643 + GCGGACGCCAGACGCGGCCCCC 22 12640
    BCL11A-10644 + CGCGGACGCCAGACGCGGCCCCC 23 12641
    BCL11A-10645 + CCGCGGACGCCAGACGCGGCCCCC 24 12642
    BCL11A-10646 + GACGCCAGACGCGGCCCC 18 12643
    BCL11A-10647 + GGACGCCAGACGCGGCCCC 19 12644
    BCL11A-4362 + CGGACGCCAGACGCGGCCCC 20 12645
    BCL11A-10648 + GCGGACGCCAGACGCGGCCCC 21 12646
    BCL11A-10649 + CGCGGACGCCAGACGCGGCCCC 22 12647
    BCL11A-10650 + CCGCGGACGCCAGACGCGGCCCC 23 12648
    BCL11A-10651 + UCCGCGGACGCCAGACGCGGCCCC 24 12649
    BCL11A-10652 + GGACGCCAGACGCGGCCC 18 12650
    BCL11A-10653 + CGGACGCCAGACGCGGCCC 19 12651
    BCL11A-4825 + GCGGACGCCAGACGCGGCCC 20 12652
    BCL11A-10654 + CGCGGACGCCAGACGCGGCCC 21 12653
    BCL11A-10655 + CCGCGGACGCCAGACGCGGCCC 22 12654
    BCL11A-10656 + UCCGCGGACGCCAGACGCGGCCC 23 12655
    BCL11A-10657 + CUCCGCGGACGCCAGACGCGGCCC 24 12656
    BCL11A-10658 + CCGGGGGAGGGGCGGGCC 18 12657
    BCL11A-10659 + CCCGGGGGAGGGGCGGGCC 19 12658
    BCL11A-5064 + CCCCGGGGGAGGGGCGGGCC 20 12659
    BCL11A-10660 + CCCCCGGGGGAGGGGCGGGCC 21 12660
    BCL11A-10661 + GCCCCCGGGGGAGGGGCGGGCC 22 12661
    BCL11A-10662 + GGCCCCCGGGGGAGGGGCGGGCC 23 12662
    BCL11A-10663 + CGGCCCCCGGGGGAGGGGCGGGCC 24 12663
    BCL11A-10664 + GGAGGGGGCGCUGGGGCC 18 12664
    BCL11A-10665 + GGGAGGGGGCGCUGGGGCC 19 12665
    BCL11A-10666 + GGGGAGGGGGCGCUGGGGCC 20 12666
    BCL11A-10667 + AGGGGAGGGGGCGCUGGGGCC 21 12667
    BCL11A-10668 + GAGGGGAGGGGGCGCUGGGGCC 22 12668
    BCL11A-10669 + CGAGGGGAGGGGGCGCUGGGGCC 23 12669
    BCL11A-10670 + CCGAGGGGAGGGGGCGCUGGGGCC 24 12670
    BCL11A-10671 + CGCGGCGGUGGCGUGGCC 18 12671
    BCL11A-10672 + CCGCGGCGGUGGCGUGGCC 19 12672
    BCL11A-9718 + GCCGCGGCGGUGGCGUGGCC 20 12673
    BCL11A-10673 + CGCCGCGGCGGUGGCGUGGCC 21 12674
    BCL11A-10674 + GCGCCGCGGCGGUGGCGUGGCC 22 12675
    BCL11A-10675 + AGCGCCGCGGCGGUGGCGUGGCC 23 12676
    BCL11A-10676 + GAGCGCCGCGGCGGUGGCGUGGCC 24 12677
    BCL11A-10677 + UGCGGGGCGGGGGGCUCC 18 12678
    BCL11A-10678 + GUGCGGGGCGGGGGGCUCC 19 12679
    BCL11A-10679 + GGUGCGGGGCGGGGGGCUCC 20 12680
    BCL11A-10680 + AGGUGCGGGGCGGGGGGCUCC 21 12681
    BCL11A-10681 + GAGGUGCGGGGCGGGGGGCUCC 22 12682
    BCL11A-10682 + GGAGGUGCGGGGCGGGGGGCUCC 23 12683
    BCL11A-10683 + GGGAGGUGCGGGGCGGGGGGCUCC 24 12684
    BCL11A-10684 + AACAUGGGCAGGGCGAGC 18 12685
    BCL11A-10685 + AAACAUGGGCAGGGCGAGC 19 12686
    BCL11A-9721 + AAAACAUGGGCAGGGCGAGC 20 12687
    BCL11A-10686 + CAAAACAUGGGCAGGGCGAGC 21 12688
    BCL11A-10687 + ACAAAACAUGGGCAGGGCGAGC 22 12689
    BCL11A-10688 + CACAAAACAUGGGCAGGGCGAGC 23 12690
    BCL11A-10689 + ACACAAAACAUGGGCAGGGCGAGC 24 12691
    BCL11A-10690 + GCCGAGGGGAGGGGGCGC 18 12692
    BCL11A-10691 + GGCCGAGGGGAGGGGGCGC 19 12693
    BCL11A-4490 + GGGCCGAGGGGAGGGGGCGC 20 12694
    BCL11A-10692 + CGGGCCGAGGGGAGGGGGCGC 21 12695
    BCL11A-10693 + GCGGGCCGAGGGGAGGGGGCGC 22 12696
    BCL11A-10694 + GGCGGGCCGAGGGGAGGGGGCGC 23 12697
    BCL11A-10695 + GGGCGGGCCGAGGGGAGGGGGCGC 24 12698
    BCL11A-10696 + AUAAUACAAAGAUGGCGC 18 12699
    BCL11A-10697 + AAUAAUACAAAGAUGGCGC 19 12700
    BCL11A-9565 + AAAUAAUACAAAGAUGGCGC 20 12701
    BCL11A-10698 + GAAAUAAUACAAAGAUGGCGC 21 12702
    BCL11A-10699 + AGAAAUAAUACAAAGAUGGCGC 22 12703
    BCL11A-10700 + UAGAAAUAAUACAAAGAUGGCGC 23 12704
    BCL11A-10701 + UUAGAAAUAAUACAAAGAUGGCGC 24 12705
    BCL11A-10702 + GAGGGGGAGGUGCGGGGC 18 12706
    BCL11A-10703 + GGAGGGGGAGGUGCGGGGC 19 12707
    BCL11A-9724 + GGGAGGGGGAGGUGCGGGGC 20 12708
    BCL11A-10704 + GGGGAGGGGGAGGUGCGGGGC 21 12709
    BCL11A-10705 + CGGGGAGGGGGAGGUGCGGGGC 22 12710
    BCL11A-10706 + GCGGGGAGGGGGAGGUGCGGGGC 23 12711
    BCL11A-10707 + UGCGGGGAGGGGGAGGUGCGGGGC 24 12712
    BCL11A-10708 + CCGCGGCGGUGGCGUGGC 18 12713
    BCL11A-10709 + GCCGCGGCGGUGGCGUGGC 19 12714
    BCL11A-9725 + CGCCGCGGCGGUGGCGUGGC 20 12715
    BCL11A-10710 + GCGCCGCGGCGGUGGCGUGGC 21 12716
    BCL11A-10711 + AGCGCCGCGGCGGUGGCGUGGC 22 12717
    BCL11A-10712 + GAGCGCCGCGGCGGUGGCGUGGC 23 12718
    BCL11A-10713 + CGAGCGCCGCGGCGGUGGCGUGGC 24 12719
    BCL11A-10714 + CAAGCCAAUGGCCAGUGC 18 12720
    BCL11A-10715 + ACAAGCCAAUGGCCAGUGC 19 12721
    BCL11A-9727 + GACAAGCCAAUGGCCAGUGC 20 12722
    BCL11A-10716 + GGACAAGCCAAUGGCCAGUGC 21 12723
    BCL11A-10717 + AGGACAAGCCAAUGGCCAGUGC 22 12724
    BCL11A-10718 + CAGGACAAGCCAAUGGCCAGUGC 23 12725
    BCL11A-10719 + CCAGGACAAGCCAAUGGCCAGUGC 24 12726
    BCL11A-10720 + CACCAAUGGACACACAUC 18 12727
    BCL11A-10721 + ACACCAAUGGACACACAUC 19 12728
    BCL11A-9729 + CACACCAAUGGACACACAUC 20 12729
    BCL11A-10722 + UCACACCAAUGGACACACAUC 21 12730
    BCL11A-10723 + CUCACACCAAUGGACACACAUC 22 12731
    BCL11A-10724 + GCUCACACCAAUGGACACACAUC 23 12732
    BCL11A-10725 + AGCUCACACCAAUGGACACACAUC 24 12733
    BCL11A-10726 + GACGGCUCGGUUCACAUC 18 12734
    BCL11A-10727 + CGACGGCUCGGUUCACAUC 19 12735
    BCL11A-9568 + ACGACGGCUCGGUUCACAUC 20 12736
    BCL11A-10728 + GACGACGGCUCGGUUCACAUC 21 12737
    BCL11A-10729 + GGACGACGGCUCGGUUCACAUC 22 12738
    BCL11A-10730 + CGGACGACGGCUCGGUUCACAUC 23 12739
    BCL11A-10731 + GCGGACGACGGCUCGGUUCACAUC 24 12740
    BCL11A-10732 + UUAGAAAGAAGGAGACUC 18 12741
    BCL11A-10733 + GUUAGAAAGAAGGAGACUC 19 12742
    BCL11A-10734 + GGUUAGAAAGAAGGAGACUC 20 12743
    BCL11A-10735 + GGGUUAGAAAGAAGGAGACUC 21 12744
    BCL11A-10736 + CGGGUUAGAAAGAAGGAGACUC 22 12745
    BCL11A-10737 + CCGGGUUAGAAAGAAGGAGACUC 23 12746
    BCL11A-10738 + GCCGGGUUAGAAAGAAGGAGACUC 24 12747
    BCL11A-10739 + UCUCUUUUACCUCGACUC 18 12748
    BCL11A-10740 + AUCUCUUUUACCUCGACUC 19 12749
    BCL11A-10741 + UAUCUCUUUUACCUCGACUC 20 12750
    BCL11A-10742 + UUAUCUCUUUUACCUCGACUC 21 12751
    BCL11A-10743 + UUUAUCUCUUUUACCUCGACUC 22 12752
    BCL11A-10744 + CUUUAUCUCUUUUACCUCGACUC 23 12753
    BCL11A-10745 + CCUUUAUCUCUUUUACCUCGACUC 24 12754
    BCL11A-10746 + CUCUCGGAGGUUUUUCUC 18 12755
    BCL11A-10747 + ACUCUCGGAGGUUUUUCUC 19 12756
    BCL11A-10748 + GACUCUCGGAGGUUUUUCUC 20 12757
    BCL11A-10749 + CGACUCUCGGAGGUUUUUCUC 21 12758
    BCL11A-10750 + UCGACUCUCGGAGGUUUUUCUC 22 12759
    BCL11A-10751 + CUCGACUCUCGGAGGUUUUUCUC 23 12760
    BCL11A-10752 + CCUCGACUCUCGGAGGUUUUUCUC 24 12761
    BCL11A-10753 + AAAAAAAAAAAAAAAAAG 18 12762
    BCL11A-10754 + AAAAAAAAAAAAAAAAAAG 19 12763
    BCL11A-4526 + AAAAAAAAAAAAAAAAAAAG 20 12764
    BCL11A-10755 + AAAAAAAAAAAAAAAAAAAAG 21 12765
    BCL11A-10756 + AAAAAAAAAAAAAAAAAAAAAG 22 12766
    BCL11A-10757 + AAAAAAAAAAAAAAAAAAAAAAG 23 12767
    BCL11A-10758 + AAAAAAAAAAAAAAAAAAAAAAAG 24 12768
    BCL11A-10759 + GAGAGCCGGGUUAGAAAG 18 12769
    BCL11A-10760 + GGAGAGCCGGGUUAGAAAG 19 12770
    BCL11A-10761 + GGGAGAGCCGGGUUAGAAAG 20 12771
    BCL11A-10762 + CGGGAGAGCCGGGUUAGAAAG 21 12772
    BCL11A-10763 + UCGGGAGAGCCGGGUUAGAAAG 22 12773
    BCL11A-10764 + AUCGGGAGAGCCGGGUUAGAAAG 23 12774
    BCL11A-10765 + CAUCGGGAGAGCCGGGUUAGAAAG 24 12775
    BCL11A-10766 + GGGCGAGCAGGAGAGAAG 18 12776
    BCL11A-10767 + AGGGCGAGCAGGAGAGAAG 19 12777
    BCL11A-4629 + CAGGGCGAGCAGGAGAGAAG 20 12778
    BCL11A-10768 + GCAGGGCGAGCAGGAGAGAAG 21 12779
    BCL11A-10769 + GGCAGGGCGAGCAGGAGAGAAG 22 12780
    BCL11A-10770 + GGGCAGGGCGAGCAGGAGAGAAG 23 12781
    BCL11A-10771 + UGGGCAGGGCGAGCAGGAGAGAAG 24 12782
    BCL11A-10772 + AGAAGGGGAGGAGGGAAG 18 12783
    BCL11A-10773 + GAGAAGGGGAGGAGGGAAG 19 12784
    BCL11A-4577 + AGAGAAGGGGAGGAGGGAAG 20 12785
    BCL11A-10774 + GAGAGAAGGGGAGGAGGGAAG 21 12786
    BCL11A-10775 + GGAGAGAAGGGGAGGAGGGAAG 22 12787
    BCL11A-10776 + AGGAGAGAAGGGGAGGAGGGAAG 23 12788
    BCL11A-10777 + CAGGAGAGAAGGGGAGGAGGGAAG 24 12789
    BCL11A-10778 + ACACGGCAAUGGUUCCAG 18 12790
    BCL11A-10779 + UACACGGCAAUGGUUCCAG 19 12791
    BCL11A-10780 + AUACACGGCAAUGGUUCCAG 20 12792
    BCL11A-10781 + CAUACACGGCAAUGGUUCCAG 21 12793
    BCL11A-10782 + GCAUACACGGCAAUGGUUCCAG 22 12794
    BCL11A-10783 + UGCAUACACGGCAAUGGUUCCAG 23 12795
    BCL11A-10784 + GUGCAUACACGGCAAUGGUUCCAG 24 12796
    BCL11A-10785 + CAUGGGCAGGGCGAGCAG 18 12797
    BCL11A-10786 + ACAUGGGCAGGGCGAGCAG 19 12798
    BCL11A-10787 + AACAUGGGCAGGGCGAGCAG 20 12799
    BCL11A-10788 + AAACAUGGGCAGGGCGAGCAG 21 12800
    BCL11A-10789 + AAAACAUGGGCAGGGCGAGCAG 22 12801
    BCL11A-10790 + CAAAACAUGGGCAGGGCGAGCAG 23 12802
    BCL11A-10791 + ACAAAACAUGGGCAGGGCGAGCAG 24 12803
    BCL11A-10792 + GGAGAGAGAGAGAGAGAG 18 12804
    BCL11A-10793 + GGGAGAGAGAGAGAGAGAG 19 12805
    BCL11A-4999 + AGGGAGAGAGAGAGAGAGAG 20 12806
    BCL11A-10794 + GAGGGAGAGAGAGAGAGAGAG 21 12807
    BCL11A-10795 + AGAGGGAGAGAGAGAGAGAGAG 22 12808
    BCL11A-10796 + UAGAGGGAGAGAGAGAGAGAGAG 23 12809
    BCL11A-10797 + AUAGAGGGAGAGAGAGAGAGAGAG 24 12810
    BCL11A-10798 + AAAGAGGGAGAGAGAGAG 18 12811
    BCL11A-10799 + AAAAGAGGGAGAGAGAGAG 19 12812
    BCL11A-4916 + AAAAAGAGGGAGAGAGAGAG 20 12813
    BCL11A-10800 + AAAAAAGAGGGAGAGAGAGAG 21 12814
    BCL11A-10801 + AAAAAAAGAGGGAGAGAGAGAG 22 12815
    BCL11A-10802 + AAAAAAAAGAGGGAGAGAGAGAG 23 12816
    BCL11A-10803 + AAAAAAAAAGAGGGAGAGAGAGAG 24 12817
    BCL11A-10804 + GCAGGGCGAGCAGGAGAG 18 12818
    BCL11A-10805 + GGCAGGGCGAGCAGGAGAG 19 12819
    BCL11A-4870 + GGGCAGGGCGAGCAGGAGAG 20 12820
    BCL11A-10806 + UGGGCAGGGCGAGCAGGAGAG 21 12821
    BCL11A-10807 + AUGGGCAGGGCGAGCAGGAGAG 22 12822
    BCL11A-10808 + CAUGGGCAGGGCGAGCAGGAGAG 23 12823
    BCL11A-10809 + ACAUGGGCAGGGCGAGCAGGAGAG 24 12824
    BCL11A-10810 + GUGGCGUGGCCGGGAGAG 18 12825
    BCL11A-10811 + GGUGGCGUGGCCGGGAGAG 19 12826
    BCL11A-10812 + CGGUGGCGUGGCCGGGAGAG 20 12827
    BCL11A-10813 + GCGGUGGCGUGGCCGGGAGAG 21 12828
    BCL11A-10814 + GGCGGUGGCGUGGCCGGGAGAG 22 12829
    BCL11A-10815 + CGGCGGUGGCGUGGCCGGGAGAG 23 12830
    BCL11A-10816 + GCGGCGGUGGCGUGGCCGGGAGAG 24 12831
    BCL11A-10817 + GGGGAGGGGCGGGCCGAG 18 12832
    BCL11A-10818 + GGGGGAGGGGCGGGCCGAG 19 12833
    BCL11A-4677 + CGGGGGAGGGGCGGGCCGAG 20 12834
    BCL11A-10819 + CCGGGGGAGGGGCGGGCCGAG 21 12835
    BCL11A-10820 + CCCGGGGGAGGGGCGGGCCGAG 22 12836
    BCL11A-10821 + CCCCGGGGGAGGGGCGGGCCGAG 23 12837
    BCL11A-10822 + CCCCCGGGGGAGGGGCGGGCCGAG 24 12838
    BCL11A-10823 + AAACAUGGGCAGGGCGAG 18 12839
    BCL11A-10824 + AAAACAUGGGCAGGGCGAG 19 12840
    BCL11A-10825 + CAAAACAUGGGCAGGGCGAG 20 12841
    BCL11A-10826 + ACAAAACAUGGGCAGGGCGAG 21 12842
    BCL11A-10827 + CACAAAACAUGGGCAGGGCGAG 22 12843
    BCL11A-10828 + ACACAAAACAUGGGCAGGGCGAG 23 12844
    BCL11A-10829 + CACACAAAACAUGGGCAGGGCGAG 24 12845
    BCL11A-10830 + AGCAGGAGAGAAGGGGAG 18 12846
    BCL11A-10831 + GAGCAGGAGAGAAGGGGAG 19 12847
    BCL11A-5082 + CGAGCAGGAGAGAAGGGGAG 20 12848
    BCL11A-10832 + GCGAGCAGGAGAGAAGGGGAG 21 12849
    BCL11A-10833 + GGCGAGCAGGAGAGAAGGGGAG 22 12850
    BCL11A-10834 + GGGCGAGCAGGAGAGAAGGGGAG 23 12851
    BCL11A-10835 + AGGGCGAGCAGGAGAGAAGGGGAG 24 12852
    BCL11A-10836 + AAUGGCCAGUGCGGGGAG 18 12853
    BCL11A-10837 + CAAUGGCCAGUGCGGGGAG 19 12854
    BCL11A-9572 + CCAAUGGCCAGUGCGGGGAG 20 12855
    BCL11A-10838 + GCCAAUGGCCAGUGCGGGGAG 21 12856
    BCL11A-10839 + AGCCAAUGGCCAGUGCGGGGAG 22 12857
    BCL11A-10840 + AAGCCAAUGGCCAGUGCGGGGAG 23 12858
    BCL11A-10841 + CAAGCCAAUGGCCAGUGCGGGGAG 24 12859
    BCL11A-10842 + GAGAGAGAAGAGAGAUAG 18 12860
    BCL11A-10843 + AGAGAGAGAAGAGAGAUAG 19 12861
    BCL11A-9740 + GAGAGAGAGAAGAGAGAUAG 20 12862
    BCL11A-10844 + AGAGAGAGAGAAGAGAGAUAG 21 12863
    BCL11A-10845 + GAGAGAGAGAGAAGAGAGAUAG 22 12864
    BCL11A-10846 + GGAGAGAGAGAGAAGAGAGAUAG 23 12865
    BCL11A-10847 + GGGAGAGAGAGAGAAGAGAGAUAG 24 12866
    BCL11A-10848 + CGCCAGACGCGGCCCCCG 18 12867
    BCL11A-10849 + ACGCCAGACGCGGCCCCCG 19 12868
    BCL11A-4351 + GACGCCAGACGCGGCCCCCG 20 12869
    BCL11A-10850 + GGACGCCAGACGCGGCCCCCG 21 12870
    BCL11A-10851 + CGGACGCCAGACGCGGCCCCCG 22 12871
    BCL11A-10852 + GCGGACGCCAGACGCGGCCCCCG 23 12872
    BCL11A-10853 + CGCGGACGCCAGACGCGGCCCCCG 24 12873
    BCL11A-10854 + CGGGGGAGGGGCGGGCCG 18 12874
    BCL11A-10855 + CCGGGGGAGGGGCGGGCCG 19 12875
    BCL11A-4642 + CCCGGGGGAGGGGCGGGCCG 20 12876
    BCL11A-10856 + CCCCGGGGGAGGGGCGGGCCG 21 12877
    BCL11A-10857 + CCCCCGGGGGAGGGGCGGGCCG 22 12878
    BCL11A-10858 + GCCCCCGGGGGAGGGGCGGGCCG 23 12879
    BCL11A-10859 + GGCCCCCGGGGGAGGGGCGGGCCG 24 12880
    BCL11A-10860 + GCGGCGGCGGCGGCGGCG 18 12881
    BCL11A-10861 + GGCGGCGGCGGCGGCGGCG 19 12882
    BCL11A-5097 + CGGCGGCGGCGGCGGCGGCG 20 12883
    BCL11A-10862 + GCGGCGGCGGCGGCGGCGGCG 21 12884
    BCL11A-10863 + GGCGGCGGCGGCGGCGGCGGCG 22 12885
    BCL11A-10864 + CGGCGGCGGCGGCGGCGGCGGCG 23 12886
    BCL11A-10865 + GCGGCGGCGGCGGCGGCGGCGGCG 24 12887
    BCL11A-10866 + AGGGGGAGGUGCGGGGCG 18 12888
    BCL11A-10867 + GAGGGGGAGGUGCGGGGCG 19 12889
    BCL11A-9749 + GGAGGGGGAGGUGCGGGGCG 20 12890
    BCL11A-10868 + GGGAGGGGGAGGUGCGGGGCG 21 12891
    BCL11A-10869 + GGGGAGGGGGAGGUGCGGGGCG 22 12892
    BCL11A-10870 + CGGGGAGGGGGAGGUGCGGGGCG 23 12893
    BCL11A-10871 + GCGGGGAGGGGGAGGUGCGGGGCG 24 12894
    BCL11A-10872 + GGCCGAGGGGAGGGGGCG 18 12895
    BCL11A-10873 + GGGCCGAGGGGAGGGGGCG 19 12896
    BCL11A-5099 + CGGGCCGAGGGGAGGGGGCG 20 12897
    BCL11A-10874 + GCGGGCCGAGGGGAGGGGGCG 21 12898
    BCL11A-10875 + GGCGGGCCGAGGGGAGGGGGCG 22 12899
    BCL11A-10876 + GGGCGGGCCGAGGGGAGGGGGCG 23 12900
    BCL11A-10877 + GGGGCGGGCCGAGGGGAGGGGGCG 24 12901
    BCL11A-10878 + AAUAAUACAAAGAUGGCG 18 12902
    BCL11A-10879 + AAAUAAUACAAAGAUGGCG 19 12903
    BCL11A-10880 + GAAAUAAUACAAAGAUGGCG 20 12904
    BCL11A-10881 + AGAAAUAAUACAAAGAUGGCG 21 12905
    BCL11A-10882 + UAGAAAUAAUACAAAGAUGGCG 22 12906
    BCL11A-10883 + UUAGAAAUAAUACAAAGAUGGCG 23 12907
    BCL11A-10884 + AUUAGAAAUAAUACAAAGAUGGCG 24 12908
    BCL11A-10885 + AAGCCAAUGGCCAGUGCG 18 12909
    BCL11A-10886 + CAAGCCAAUGGCCAGUGCG 19 12910
    BCL11A-9751 + ACAAGCCAAUGGCCAGUGCG 20 12911
    BCL11A-10887 + GACAAGCCAAUGGCCAGUGCG 21 12912
    BCL11A-10888 + GGACAAGCCAAUGGCCAGUGCG 22 12913
    BCL11A-10889 + AGGACAAGCCAAUGGCCAGUGCG 23 12914
    BCL11A-10890 + CAGGACAAGCCAAUGGCCAGUGCG 24 12915
    BCL11A-6490 + GGGUUUGCCUUGCUUGCG 18 12916
    BCL11A-6491 + GGGGUUUGCCUUGCUUGCG 19 12917
    BCL11A-6492 + UGGGGUUUGCCUUGCUUGCG 20 12918
    BCL11A-6493 + CUGGGGUUUGCCUUGCUUGCG 21 12919
    BCL11A-6494 + GCUGGGGUUUGCCUUGCUUGCG 22 12920
    BCL11A-6495 + UGCUGGGGUUUGCCUUGCUUGCG 23 12921
    BCL11A-6496 + GUGCUGGGGUUUGCCUUGCUUGCG 24 12922
    BCL11A-10891 + CAGGGGUGGGAGGAAAGG 18 12923
    BCL11A-10892 + GCAGGGGUGGGAGGAAAGG 19 12924
    BCL11A-10893 + GGCAGGGGUGGGAGGAAAGG 20 12925
    BCL11A-10894 + UGGCAGGGGUGGGAGGAAAGG 21 12926
    BCL11A-10895 + GUGGCAGGGGUGGGAGGAAAGG 22 12927
    BCL11A-10896 + GGUGGCAGGGGUGGGAGGAAAGG 23 12928
    BCL11A-10897 + GGGUGGCAGGGGUGGGAGGAAAGG 24 12929
    BCL11A-10898 + ACACAAAACAUGGGCAGG 18 12930
    BCL11A-10899 + CACACAAAACAUGGGCAGG 19 12931
    BCL11A-10900 + ACACACAAAACAUGGGCAGG 20 12932
    BCL11A-10901 + GACACACAAAACAUGGGCAGG 21 12933
    BCL11A-10902 + AGACACACAAAACAUGGGCAGG 22 12934
    BCL11A-10903 + GAGACACACAAAACAUGGGCAGG 23 12935
    BCL11A-10904 + AGAGACACACAAAACAUGGGCAGG 24 12936
    BCL11A-10905 + AAAAAAAAAAAAAAGAGG 18 12937
    BCL11A-10906 + AAAAAAAAAAAAAAAGAGG 19 12938
    BCL11A-4903 + AAAAAAAAAAAAAAAAGAGG 20 12939
    BCL11A-10907 + AAAAAAAAAAAAAAAAAGAGG 21 12940
    BCL11A-10908 + AAAAAAAAAAAAAAAAAAGAGG 22 12941
    BCL11A-10909 + AAAAAAAAAAAAAAAAAAAGAGG 23 12942
    BCL11A-10910 + AAAAAAAAAAAAAAAAAAAAGAGG 24 12943
    BCL11A-10911 + AGAGAAGAGAGAUAGAGG 18 12944
    BCL11A-10912 + GAGAGAAGAGAGAUAGAGG 19 12945
    BCL11A-10913 + AGAGAGAAGAGAGAUAGAGG 20 12946
    BCL11A-10914 + GAGAGAGAAGAGAGAUAGAGG 21 12947
    BCL11A-10915 + AGAGAGAGAAGAGAGAUAGAGG 22 12948
    BCL11A-10916 + GAGAGAGAGAAGAGAGAUAGAGG 23 12949
    BCL11A-10917 + AGAGAGAGAGAAGAGAGAUAGAGG 24 12950
    BCL11A-10918 + GCAGGAGAGAAGGGGAGG 18 12951
    BCL11A-10919 + AGCAGGAGAGAAGGGGAGG 19 12952
    BCL11A-4408 + GAGCAGGAGAGAAGGGGAGG 20 12953
    BCL11A-10920 + CGAGCAGGAGAGAAGGGGAGG 21 12954
    BCL11A-10921 + GCGAGCAGGAGAGAAGGGGAGG 22 12955
    BCL11A-10922 + GGCGAGCAGGAGAGAAGGGGAGG 23 12956
    BCL11A-10923 + GGGCGAGCAGGAGAGAAGGGGAGG 24 12957
    BCL11A-10924 + AUGGCCAGUGCGGGGAGG 18 12958
    BCL11A-10925 + AAUGGCCAGUGCGGGGAGG 19 12959
    BCL11A-9756 + CAAUGGCCAGUGCGGGGAGG 20 12960
    BCL11A-10926 + CCAAUGGCCAGUGCGGGGAGG 21 12961
    BCL11A-10927 + GCCAAUGGCCAGUGCGGGGAGG 22 12962
    BCL11A-10928 + AGCCAAUGGCCAGUGCGGGGAGG 23 12963
    BCL11A-10929 + AAGCCAAUGGCCAGUGCGGGGAGG 24 12964
    BCL11A-10930 + GCCAGACGCGGCCCCCGG 18 12965
    BCL11A-10931 + CGCCAGACGCGGCCCCCGG 19 12966
    BCL11A-4561 + ACGCCAGACGCGGCCCCCGG 20 12967
    BCL11A-10932 + GACGCCAGACGCGGCCCCCGG 21 12968
    BCL11A-10933 + GGACGCCAGACGCGGCCCCCGG 22 12969
    BCL11A-10934 + CGGACGCCAGACGCGGCCCCCGG 23 12970
    BCL11A-10935 + GCGGACGCCAGACGCGGCCCCCGG 24 12971
    BCL11A-10936 + CGGCGGUGGCGUGGCCGG 18 12972
    BCL11A-10937 + GCGGCGGUGGCGUGGCCGG 19 12973
    BCL11A-10938 + CGCGGCGGUGGCGUGGCCGG 20 12974
    BCL11A-10939 + CCGCGGCGGUGGCGUGGCCGG 21 12975
    BCL11A-10940 + GCCGCGGCGGUGGCGUGGCCGG 22 12976
    BCL11A-10941 + CGCCGCGGCGGUGGCGUGGCCGG 23 12977
    BCL11A-10942 + GCGCCGCGGCGGUGGCGUGGCCGG 24 12978
    BCL11A-10943 + CGGCGGCGGCGGCGGCGG 18 12979
    BCL11A-10944 + GCGGCGGCGGCGGCGGCGG 19 12980
    BCL11A-4479 + GGCGGCGGCGGCGGCGGCGG 20 12981
    BCL11A-10945 + CGGCGGCGGCGGCGGCGGCGG 21 12982
    BCL11A-10946 + GCGGCGGCGGCGGCGGCGGCGG 22 12983
    BCL11A-10947 + GGCGGCGGCGGCGGCGGCGGCGG 23 12984
    BCL11A-10948 + CGGCGGCGGCGGCGGCGGCGGCGG 24 12985
    BCL11A-10949 + CGGCUCGGUUCACAUCGG 18 12986
    BCL11A-10950 + ACGGCUCGGUUCACAUCGG 19 12987
    BCL11A-10951 + GACGGCUCGGUUCACAUCGG 20 12988
    BCL11A-10952 + CGACGGCUCGGUUCACAUCGG 21 12989
    BCL11A-10953 + ACGACGGCUCGGUUCACAUCGG 22 12990
    BCL11A-10954 + GACGACGGCUCGGUUCACAUCGG 23 12991
    BCL11A-10955 + GGACGACGGCUCGGUUCACAUCGG 24 12992
    BCL11A-10956 + AGGGGUGGGAGGAAAGGG 18 12993
    BCL11A-10957 + CAGGGGUGGGAGGAAAGGG 19 12994
    BCL11A-9759 + GCAGGGGUGGGAGGAAAGGG 20 12995
    BCL11A-10958 + GGCAGGGGUGGGAGGAAAGGG 21 12996
    BCL11A-10959 + UGGCAGGGGUGGGAGGAAAGGG 22 12997
    BCL11A-10960 + GUGGCAGGGGUGGGAGGAAAGGG 23 12998
    BCL11A-10961 + GGUGGCAGGGGUGGGAGGAAAGGG 24 12999
    BCL11A-10962 + GCGAGCAGGAGAGAAGGG 18 13000
    BCL11A-10963 + GGCGAGCAGGAGAGAAGGG 19 13001
    BCL11A-4873 + GGGCGAGCAGGAGAGAAGGG 20 13002
    BCL11A-10964 + AGGGCGAGCAGGAGAGAAGGG 21 13003
    BCL11A-10965 + CAGGGCGAGCAGGAGAGAAGGG 22 13004
    BCL11A-10966 + GCAGGGCGAGCAGGAGAGAAGGG 23 13005
    BCL11A-10967 + GGCAGGGCGAGCAGGAGAGAAGGG 24 13006
    BCL11A-10968 + AAGAAAGGGGUGGCAGGG 18 13007
    BCL11A-10969 + GAAGAAAGGGGUGGCAGGG 19 13008
    BCL11A-10970 + AGAAGAAAGGGGUGGCAGGG 20 13009
    BCL11A-10971 + GAGAAGAAAGGGGUGGCAGGG 21 13010
    BCL11A-10972 + AGAGAAGAAAGGGGUGGCAGGG 22 13011
    BCL11A-10973 + GAGAGAAGAAAGGGGUGGCAGGG 23 13012
    BCL11A-10974 + GGAGAGAAGAAAGGGGUGGCAGGG 24 13013
    BCL11A-10975 + GGAGGGGCGGGCCGAGGG 18 13014
    BCL11A-10976 + GGGAGGGGCGGGCCGAGGG 19 13015
    BCL11A-4875 + GGGGAGGGGCGGGCCGAGGG 20 13016
    BCL11A-10977 + GGGGGAGGGGCGGGCCGAGGG 21 13017
    BCL11A-10978 + CGGGGGAGGGGCGGGCCGAGGG 22 13018
    BCL11A-10979 + CCGGGGGAGGGGCGGGCCGAGGG 23 13019
    BCL11A-10980 + CCCGGGGGAGGGGCGGGCCGAGGG 24 13020
    BCL11A-10981 + GAGAGAAGGGGAGGAGGG 18 13021
    BCL11A-10982 + GGAGAGAAGGGGAGGAGGG 19 13022
    BCL11A-4998 + AGGAGAGAAGGGGAGGAGGG 20 13023
    BCL11A-10983 + CAGGAGAGAAGGGGAGGAGGG 21 13024
    BCL11A-10984 + GCAGGAGAGAAGGGGAGGAGGG 22 13025
    BCL11A-10985 + AGCAGGAGAGAAGGGGAGGAGGG 23 13026
    BCL11A-10986 + GAGCAGGAGAGAAGGGGAGGAGGG 24 13027
    BCL11A-10987 + GCGGCCCCCGGGGGAGGG 18 13028
    BCL11A-10988 + CGCGGCCCCCGGGGGAGGG 19 13029
    BCL11A-4959 + ACGCGGCCCCCGGGGGAGGG 20 13030
    BCL11A-10989 + GACGCGGCCCCCGGGGGAGGG 21 13031
    BCL11A-10990 + AGACGCGGCCCCCGGGGGAGGG 22 13032
    BCL11A-10991 + CAGACGCGGCCCCCGGGGGAGGG 23 13033
    BCL11A-10992 + CCAGACGCGGCCCCCGGGGGAGGG 24 13034
    BCL11A-10993 + CCCCGGGGGAGGGGCGGG 18 13035
    BCL11A-10994 + CCCCCGGGGGAGGGGCGGG 19 13036
    BCL11A-4817 + GCCCCCGGGGGAGGGGCGGG 20 13037
    BCL11A-10995 + GGCCCCCGGGGGAGGGGCGGG 21 13038
    BCL11A-10996 + CGGCCCCCGGGGGAGGGGCGGG 22 13039
    BCL11A-10997 + GCGGCCCCCGGGGGAGGGGCGGG 23 13040
    BCL11A-10998 + CGCGGCCCCCGGGGGAGGGGCGGG 24 13041
    BCL11A-6504 + GACAUGGUGGGCUGCGGG 18 13042
    BCL11A-6505 + AGACAUGGUGGGCUGCGGG 19 13043
    BCL11A-6506 + GAGACAUGGUGGGCUGCGGG 20 13044
    BCL11A-6507 + CGAGACAUGGUGGGCUGCGGG 21 13045
    BCL11A-6508 + GCGAGACAUGGUGGGCUGCGGG 22 13046
    BCL11A-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 13047
    BCL11A-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 13048
    BCL11A-10999 + GCCAAUGGCCAGUGCGGG 18 13049
    BCL11A-11000 + AGCCAAUGGCCAGUGCGGG 19 13050
    BCL11A-11001 + AAGCCAAUGGCCAGUGCGGG 20 13051
    BCL11A-11002 + CAAGCCAAUGGCCAGUGCGGG 21 13052
    BCL11A-11003 + ACAAGCCAAUGGCCAGUGCGGG 22 13053
    BCL11A-11004 + GACAAGCCAAUGGCCAGUGCGGG 23 13054
    BCL11A-11005 + GGACAAGCCAAUGGCCAGUGCGGG 24 13055
    BCL11A-11006 + GGGAGGGGGAGGUGCGGG 18 13056
    BCL11A-11007 + GGGGAGGGGGAGGUGCGGG 19 13057
    BCL11A-11008 + CGGGGAGGGGGAGGUGCGGG 20 13058
    BCL11A-11009 + GCGGGGAGGGGGAGGUGCGGG 21 13059
    BCL11A-11010 + UGCGGGGAGGGGGAGGUGCGGG 22 13060
    BCL11A-11011 + GUGCGGGGAGGGGGAGGUGCGGG 23 13061
    BCL11A-11012 + AGUGCGGGGAGGGGGAGGUGCGGG 24 13062
    BCL11A-11013 + CGAGCAGGAGAGAAGGGG 18 13063
    BCL11A-11014 + GCGAGCAGGAGAGAAGGGG 19 13064
    BCL11A-4476 + GGCGAGCAGGAGAGAAGGGG 20 13065
    BCL11A-11015 + GGGCGAGCAGGAGAGAAGGGG 21 13066
    BCL11A-11016 + AGGGCGAGCAGGAGAGAAGGGG 22 13067
    BCL11A-11017 + CAGGGCGAGCAGGAGAGAAGGGG 23 13068
    BCL11A-11018 + GCAGGGCGAGCAGGAGAGAAGGGG 24 13069
    BCL11A-11019 + AGAAAGGGGUGGCAGGGG 18 13070
    BCL11A-11020 + AAGAAAGGGGUGGCAGGGG 19 13071
    BCL11A-9762 + GAAGAAAGGGGUGGCAGGGG 20 13072
    BCL11A-11021 + AGAAGAAAGGGGUGGCAGGGG 21 13073
    BCL11A-11022 + GAGAAGAAAGGGGUGGCAGGGG 22 13074
    BCL11A-11023 + AGAGAAGAAAGGGGUGGCAGGGG 23 13075
    BCL11A-11024 + GAGAGAAGAAAGGGGUGGCAGGGG 24 13076
    BCL11A-11025 + AUGGACACACAUCAGGGG 18 13077
    BCL11A-11026 + AAUGGACACACAUCAGGGG 19 13078
    BCL11A-11027 + CAAUGGACACACAUCAGGGG 20 13079
    BCL11A-11028 + CCAAUGGACACACAUCAGGGG 21 13080
    BCL11A-11029 + ACCAAUGGACACACAUCAGGGG 22 13081
    BCL11A-11030 + CACCAAUGGACACACAUCAGGGG 23 13082
    BCL11A-11031 + ACACCAAUGGACACACAUCAGGGG 24 13083
    BCL11A-11032 + GAGGGGCGGGCCGAGGGG 18 13084
    BCL11A-11033 + GGAGGGGCGGGCCGAGGGG 19 13085
    BCL11A-4486 + GGGAGGGGCGGGCCGAGGGG 20 13086
    BCL11A-11034 + GGGGAGGGGCGGGCCGAGGGG 21 13087
    BCL11A-11035 + GGGGGAGGGGCGGGCCGAGGGG 22 13088
    BCL11A-11036 + CGGGGGAGGGGCGGGCCGAGGGG 23 13089
    BCL11A-11037 + CCGGGGGAGGGGCGGGCCGAGGGG 24 13090
    BCL11A-11038 + CAGACGCGGCCCCCGGGG 18 13091
    BCL11A-11039 + CCAGACGCGGCCCCCGGGG 19 13092
    BCL11A-4816 + GCCAGACGCGGCCCCCGGGG 20 13093
    BCL11A-11040 + CGCCAGACGCGGCCCCCGGGG 21 13094
    BCL11A-11041 + ACGCCAGACGCGGCCCCCGGGG 22 13095
    BCL11A-11042 + GACGCCAGACGCGGCCCCCGGGG 23 13096
    BCL11A-11043 + GGACGCCAGACGCGGCCCCCGGGG 24 13097
    BCL11A-11044 + CCAAUGGCCAGUGCGGGG 18 13098
    BCL11A-11045 + GCCAAUGGCCAGUGCGGGG 19 13099
    BCL11A-9763 + AGCCAAUGGCCAGUGCGGGG 20 13100
    BCL11A-11046 + AAGCCAAUGGCCAGUGCGGGG 21 13101
    BCL11A-11047 + CAAGCCAAUGGCCAGUGCGGGG 22 13102
    BCL11A-11048 + ACAAGCCAAUGGCCAGUGCGGGG 23 13103
    BCL11A-11049 + GACAAGCCAAUGGCCAGUGCGGGG 24 13104
    BCL11A-11050 + GGAGGGGGAGGUGCGGGG 18 13105
    BCL11A-11051 + GGGAGGGGGAGGUGCGGGG 19 13106
    BCL11A-9764 + GGGGAGGGGGAGGUGCGGGG 20 13107
    BCL11A-11052 + CGGGGAGGGGGAGGUGCGGGG 21 13108
    BCL11A-11053 + GCGGGGAGGGGGAGGUGCGGGG 22 13109
    BCL11A-11054 + UGCGGGGAGGGGGAGGUGCGGGG 23 13110
    BCL11A-11055 + GUGCGGGGAGGGGGAGGUGCGGGG 24 13111
    BCL11A-11056 + AGACGCGGCCCCCGGGGG 18 13112
    BCL11A-11057 + CAGACGCGGCCCCCGGGGG 19 13113
    BCL11A-4635 + CCAGACGCGGCCCCCGGGGG 20 13114
    BCL11A-11058 + GCCAGACGCGGCCCCCGGGGG 21 13115
    BCL11A-11059 + CGCCAGACGCGGCCCCCGGGGG 22 13116
    BCL11A-11060 + ACGCCAGACGCGGCCCCCGGGGG 23 13117
    BCL11A-11061 + GACGCCAGACGCGGCCCCCGGGGG 24 13118
    BCL11A-11062 + UGGGAGGAAAGGGUGGGG 18 13119
    BCL11A-11063 + GUGGGAGGAAAGGGUGGGG 19 13120
    BCL11A-9766 + GGUGGGAGGAAAGGGUGGGG 20 13121
    BCL11A-11064 + GGGUGGGAGGAAAGGGUGGGG 21 13122
    BCL11A-11065 + GGGGUGGGAGGAAAGGGUGGGG 22 13123
    BCL11A-11066 + AGGGGUGGGAGGAAAGGGUGGGG 23 13124
    BCL11A-11067 + CAGGGGUGGGAGGAAAGGGUGGGG 24 13125
    BCL11A-11068 + AGACACACAAAACAUGGG 18 13126
    BCL11A-11069 + GAGACACACAAAACAUGGG 19 13127
    BCL11A-11070 + AGAGACACACAAAACAUGGG 20 13128
    BCL11A-11071 + CAGAGACACACAAAACAUGGG 21 13129
    BCL11A-11072 + ACAGAGACACACAAAACAUGGG 22 13130
    BCL11A-11073 + GACAGAGACACACAAAACAUGGG 23 13131
    BCL11A-11074 + GGACAGAGACACACAAAACAUGGG 24 13132
    BCL11A-11075 + GCAAUGGUUCCAGAUGGG 18 13133
    BCL11A-11076 + GGCAAUGGUUCCAGAUGGG 19 13134
    BCL11A-11077 + CGGCAAUGGUUCCAGAUGGG 20 13135
    BCL11A-11078 + ACGGCAAUGGUUCCAGAUGGG 21 13136
    BCL11A-11079 + CACGGCAAUGGUUCCAGAUGGG 22 13137
    BCL11A-11080 + ACACGGCAAUGGUUCCAGAUGGG 23 13138
    BCL11A-11081 + UACACGGCAAUGGUUCCAGAUGGG 24 13139
    BCL11A-11082 + GUGGGAGGAAAGGGUGGG 18 13140
    BCL11A-11083 + GGUGGGAGGAAAGGGUGGG 19 13141
    BCL11A-9767 + GGGUGGGAGGAAAGGGUGGG 20 13142
    BCL11A-11084 + GGGGUGGGAGGAAAGGGUGGG 21 13143
    BCL11A-11085 + AGGGGUGGGAGGAAAGGGUGGG 22 13144
    BCL11A-11086 + CAGGGGUGGGAGGAAAGGGUGGG 23 13145
    BCL11A-11087 + GCAGGGGUGGGAGGAAAGGGUGGG 24 13146
    BCL11A-11088 + AGGGGUGGCAGGGGUGGG 18 13147
    BCL11A-11089 + AAGGGGUGGCAGGGGUGGG 19 13148
    BCL11A-9768 + AAAGGGGUGGCAGGGGUGGG 20 13149
    BCL11A-11090 + GAAAGGGGUGGCAGGGGUGGG 21 13150
    BCL11A-11091 + AGAAAGGGGUGGCAGGGGUGGG 22 13151
    BCL11A-11092 + AAGAAAGGGGUGGCAGGGGUGGG 23 13152
    BCL11A-11093 + GAAGAAAGGGGUGGCAGGGGUGGG 24 13153
    BCL11A-11094 + UGAACGUCAGGAGUCUGG 18 13154
    BCL11A-11095 + UUGAACGUCAGGAGUCUGG 19 13155
    BCL11A-11096 + CUUGAACGUCAGGAGUCUGG 20 13156
    BCL11A-11097 + ACUUGAACGUCAGGAGUCUGG 21 13157
    BCL11A-11098 + AACUUGAACGUCAGGAGUCUGG 22 13158
    BCL11A-11099 + GAACUUGAACGUCAGGAGUCUGG 23 13159
    BCL11A-11100 + CGAACUUGAACGUCAGGAGUCUGG 24 13160
    BCL11A-11101 + GCCGCGGCGGUGGCGUGG 18 13161
    BCL11A-11102 + CGCCGCGGCGGUGGCGUGG 19 13162
    BCL11A-11103 + GCGCCGCGGCGGUGGCGUGG 20 13163
    BCL11A-11104 + AGCGCCGCGGCGGUGGCGUGG 21 13164
    BCL11A-11105 + GAGCGCCGCGGCGGUGGCGUGG 22 13165
    BCL11A-11106 + CGAGCGCCGCGGCGGUGGCGUGG 23 13166
    BCL11A-11107 + GCGAGCGCCGCGGCGGUGGCGUGG 24 13167
    BCL11A-11108 + GGUGGGAGGAAAGGGUGG 18 13168
    BCL11A-11109 + GGGUGGGAGGAAAGGGUGG 19 13169
    BCL11A-9770 + GGGGUGGGAGGAAAGGGUGG 20 13170
    BCL11A-11110 + AGGGGUGGGAGGAAAGGGUGG 21 13171
    BCL11A-11111 + CAGGGGUGGGAGGAAAGGGUGG 22 13172
    BCL11A-11112 + GCAGGGGUGGGAGGAAAGGGUGG 23 13173
    BCL11A-11113 + GGCAGGGGUGGGAGGAAAGGGUGG 24 13174
    BCL11A-11114 + GAGAGAAGAAAGGGGUGG 18 13175
    BCL11A-11115 + GGAGAGAAGAAAGGGGUGG 19 13176
    BCL11A-11116 + GGGAGAGAAGAAAGGGGUGG 20 13177
    BCL11A-11117 + CGGGAGAGAAGAAAGGGGUGG 21 13178
    BCL11A-11118 + CCGGGAGAGAAGAAAGGGGUGG 22 13179
    BCL11A-11119 + GCCGGGAGAGAAGAAAGGGGUGG 23 13180
    BCL11A-11120 + GGCCGGGAGAGAAGAAAGGGGUGG 24 13181
    BCL11A-11121 + AAGGGGUGGCAGGGGUGG 18 13182
    BCL11A-11122 + AAAGGGGUGGCAGGGGUGG 19 13183
    BCL11A-11123 + GAAAGGGGUGGCAGGGGUGG 20 13184
    BCL11A-11124 + AGAAAGGGGUGGCAGGGGUGG 21 13185
    BCL11A-11125 + AAGAAAGGGGUGGCAGGGGUGG 22 13186
    BCL11A-11126 + GAAGAAAGGGGUGGCAGGGGUGG 23 13187
    BCL11A-11127 + AGAAGAAAGGGGUGGCAGGGGUGG 24 13188
    BCL11A-11128 + AGGGAAGAUGAAUUGUGG 18 13189
    BCL11A-11129 + CAGGGAAGAUGAAUUGUGG 19 13190
    BCL11A-11130 + GCAGGGAAGAUGAAUUGUGG 20 13191
    BCL11A-11131 + CGCAGGGAAGAUGAAUUGUGG 21 13192
    BCL11A-11132 + GCGCAGGGAAGAUGAAUUGUGG 22 13193
    BCL11A-11133 + GGCGCAGGGAAGAUGAAUUGUGG 23 13194
    BCL11A-11134 + UGGCGCAGGGAAGAUGAAUUGUGG 24 13195
    BCL11A-6524 + UGCUUGCGGCGAGACAUG 18 13196
    BCL11A-6525 + UUGCUUGCGGCGAGACAUG 19 13197
    BCL11A-6526 + CUUGCUUGCGGCGAGACAUG 20 13198
    BCL11A-6527 + CCUUGCUUGCGGCGAGACAUG 21 13199
    BCL11A-6528 + GCCUUGCUUGCGGCGAGACAUG 22 13200
    BCL11A-6529 + UGCCUUGCUUGCGGCGAGACAUG 23 13201
    BCL11A-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 13202
    BCL11A-6544 + GCGAGACAUGGUGGGCUG 18 13203
    BCL11A-6545 + GGCGAGACAUGGUGGGCUG 19 13204
    BCL11A-5361 + CGGCGAGACAUGGUGGGCUG 20 13205
    BCL11A-6546 + GCGGCGAGACAUGGUGGGCUG 21 13206
    BCL11A-6547 + UGCGGCGAGACAUGGUGGGCUG 22 13207
    BCL11A-6548 + UUGCGGCGAGACAUGGUGGGCUG 23 13208
    BCL11A-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 13209
    BCL11A-6550 + UUCCCGUUUGCUUAAGUG 18 13210
    BCL11A-6551 + AUUCCCGUUUGCUUAAGUG 19 13211
    BCL11A-6552 + AAUUCCCGUUUGCUUAAGUG 20 13212
    BCL11A-6553 + GAAUUCCCGUUUGCUUAAGUG 21 13213
    BCL11A-6554 + AGAAUUCCCGUUUGCUUAAGUG 22 13214
    BCL11A-6555 + GAGAAUUCCCGUUUGCUUAAGUG 23 13215
    BCL11A-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 13216
    BCL11A-11135 + ACAAGCCAAUGGCCAGUG 18 13217
    BCL11A-11136 + GACAAGCCAAUGGCCAGUG 19 13218
    BCL11A-9773 + GGACAAGCCAAUGGCCAGUG 20 13219
    BCL11A-11137 + AGGACAAGCCAAUGGCCAGUG 21 13220
    BCL11A-11138 + CAGGACAAGCCAAUGGCCAGUG 22 13221
    BCL11A-11139 + CCAGGACAAGCCAAUGGCCAGUG 23 13222
    BCL11A-11140 + ACCAGGACAAGCCAAUGGCCAGUG 24 13223
    BCL11A-11141 + UGCGGGGAGGGGGAGGUG 18 13224
    BCL11A-11142 + GUGCGGGGAGGGGGAGGUG 19 13225
    BCL11A-9774 + AGUGCGGGGAGGGGGAGGUG 20 13226
    BCL11A-11143 + CAGUGCGGGGAGGGGGAGGUG 21 13227
    BCL11A-11144 + CCAGUGCGGGGAGGGGGAGGUG 22 13228
    BCL11A-11145 + GCCAGUGCGGGGAGGGGGAGGUG 23 13229
    BCL11A-11146 + GGCCAGUGCGGGGAGGGGGAGGUG 24 13230
    BCL11A-11147 + GGGUGGGAGGAAAGGGUG 18 13231
    BCL11A-11148 + GGGGUGGGAGGAAAGGGUG 19 13232
    BCL11A-9775 + AGGGGUGGGAGGAAAGGGUG 20 13233
    BCL11A-11149 + CAGGGGUGGGAGGAAAGGGUG 21 13234
    BCL11A-11150 + GCAGGGGUGGGAGGAAAGGGUG 22 13235
    BCL11A-11151 + GGCAGGGGUGGGAGGAAAGGGUG 23 13236
    BCL11A-11152 + UGGCAGGGGUGGGAGGAAAGGGUG 24 13237
    BCL11A-11153 + CGCAGGGAAGAUGAAUUG 18 13238
    BCL11A-11154 + GCGCAGGGAAGAUGAAUUG 19 13239
    BCL11A-9777 + GGCGCAGGGAAGAUGAAUUG 20 13240
    BCL11A-11155 + UGGCGCAGGGAAGAUGAAUUG 21 13241
    BCL11A-11156 + AUGGCGCAGGGAAGAUGAAUUG 22 13242
    BCL11A-11157 + GAUGGCGCAGGGAAGAUGAAUUG 23 13243
    BCL11A-11158 + AGAUGGCGCAGGGAAGAUGAAUUG 24 13244
    BCL11A-11159 + UUGACAUCCAAAAUAAAU 18 13245
    BCL11A-11160 + UUUGACAUCCAAAAUAAAU 19 13246
    BCL11A-11161 + UUUUGACAUCCAAAAUAAAU 20 13247
    BCL11A-11162 + CUUUUGACAUCCAAAAUAAAU 21 13248
    BCL11A-11163 + CCUUUUGACAUCCAAAAUAAAU 22 13249
    BCL11A-11164 + GCCUUUUGACAUCCAAAAUAAAU 23 13250
    BCL11A-11165 + UGCCUUUUGACAUCCAAAAUAAAU 24 13251
    BCL11A-11166 + ACACCAAUGGACACACAU 18 13252
    BCL11A-11167 + CACACCAAUGGACACACAU 19 13253
    BCL11A-11168 + UCACACCAAUGGACACACAU 20 13254
    BCL11A-11169 + CUCACACCAAUGGACACACAU 21 13255
    BCL11A-11170 + GCUCACACCAAUGGACACACAU 22 13256
    BCL11A-11171 + AGCUCACACCAAUGGACACACAU 23 13257
    BCL11A-11172 + AAGCUCACACCAAUGGACACACAU 24 13258
    BCL11A-11173 + CGACGGCUCGGUUCACAU 18 13259
    BCL11A-11174 + ACGACGGCUCGGUUCACAU 19 13260
    BCL11A-9582 + GACGACGGCUCGGUUCACAU 20 13261
    BCL11A-11175 + GGACGACGGCUCGGUUCACAU 21 13262
    BCL11A-11176 + CGGACGACGGCUCGGUUCACAU 22 13263
    BCL11A-11177 + GCGGACGACGGCUCGGUUCACAU 23 13264
    BCL11A-11178 + GGCGGACGACGGCUCGGUUCACAU 24 13265
    BCL11A-11179 + UGCGGACGUGACGUCCCU 18 13266
    BCL11A-11180 + GUGCGGACGUGACGUCCCU 19 13267
    BCL11A-11181 + AGUGCGGACGUGACGUCCCU 20 13268
    BCL11A-11182 + AAGUGCGGACGUGACGUCCCU 21 13269
    BCL11A-11183 + CAAGUGCGGACGUGACGUCCCU 22 13270
    BCL11A-11184 + UCAAGUGCGGACGUGACGUCCCU 23 13271
    BCL11A-11185 + UUCAAGUGCGGACGUGACGUCCCU 24 13272
    BCL11A-6618 + GGCGAGACAUGGUGGGCU 18 13273
    BCL11A-6619 + CGGCGAGACAUGGUGGGCU 19 13274
    BCL11A-6620 + GCGGCGAGACAUGGUGGGCU 20 13275
    BCL11A-6621 + UGCGGCGAGACAUGGUGGGCU 21 13276
    BCL11A-6622 + UUGCGGCGAGACAUGGUGGGCU 22 13277
    BCL11A-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 13278
    BCL11A-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 13279
    BCL11A-11186 + CUCUUUUACCUCGACUCU 18 13280
    BCL11A-11187 + UCUCUUUUACCUCGACUCU 19 13281
    BCL11A-9585 + AUCUCUUUUACCUCGACUCU 20 13282
    BCL11A-11188 + UAUCUCUUUUACCUCGACUCU 21 13283
    BCL11A-11189 + UUAUCUCUUUUACCUCGACUCU 22 13284
    BCL11A-11190 + UUUAUCUCUUUUACCUCGACUCU 23 13285
    BCL11A-11191 + CUUUAUCUCUUUUACCUCGACUCU 24 13286
    BCL11A-11192 + UGAGCUGCAAGUUCAAGU 18 13287
    BCL11A-11193 + CUGAGCUGCAAGUUCAAGU 19 13288
    BCL11A-11194 + CCUGAGCUGCAAGUUCAAGU 20 13289
    BCL11A-11195 + CCCUGAGCUGCAAGUUCAAGU 21 13290
    BCL11A-11196 + CCCCUGAGCUGCAAGUUCAAGU 22 13291
    BCL11A-11197 + CCCCCUGAGCUGCAAGUUCAAGU 23 13292
    BCL11A-11198 + CCCCCCUGAGCUGCAAGUUCAAGU 24 13293
    BCL11A-11199 + GACAAGCCAAUGGCCAGU 18 13294
    BCL11A-11200 + GGACAAGCCAAUGGCCAGU 19 13295
    BCL11A-11201 + AGGACAAGCCAAUGGCCAGU 20 13296
    BCL11A-11202 + CAGGACAAGCCAAUGGCCAGU 21 13297
    BCL11A-11203 + CCAGGACAAGCCAAUGGCCAGU 22 13298
    BCL11A-11204 + ACCAGGACAAGCCAAUGGCCAGU 23 13299
    BCL11A-11205 + GACCAGGACAAGCCAAUGGCCAGU 24 13300
    BCL11A-11206 + CCCUGCGAACUUGAACGU 18 13301
    BCL11A-11207 + UCCCUGCGAACUUGAACGU 19 13302
    BCL11A-11208 + GUCCCUGCGAACUUGAACGU 20 13303
    BCL11A-11209 + CGUCCCUGCGAACUUGAACGU 21 13304
    BCL11A-11210 + ACGUCCCUGCGAACUUGAACGU 22 13305
    BCL11A-11211 + GACGUCCCUGCGAACUUGAACGU 23 13306
    BCL11A-11212 + UGACGUCCCUGCGAACUUGAACGU 24 13307
    BCL11A-11213 + GUGCGGGGAGGGGGAGGU 18 13308
    BCL11A-11214 + AGUGCGGGGAGGGGGAGGU 19 13309
    BCL11A-11215 + CAGUGCGGGGAGGGGGAGGU 20 13310
    BCL11A-11216 + CCAGUGCGGGGAGGGGGAGGU 21 13311
    BCL11A-11217 + GCCAGUGCGGGGAGGGGGAGGU 22 13312
    BCL11A-11218 + GGCCAGUGCGGGGAGGGGGAGGU 23 13313
    BCL11A-11219 + UGGCCAGUGCGGGGAGGGGGAGGU 24 13314
    BCL11A-11220 + GGGGUGGGAGGAAAGGGU 18 13315
    BCL11A-11221 + AGGGGUGGGAGGAAAGGGU 19 13316
    BCL11A-9784 + CAGGGGUGGGAGGAAAGGGU 20 13317
    BCL11A-11222 + GCAGGGGUGGGAGGAAAGGGU 21 13318
    BCL11A-11223 + GGCAGGGGUGGGAGGAAAGGGU 22 13319
    BCL11A-11224 + UGGCAGGGGUGGGAGGAAAGGGU 23 13320
    BCL11A-11225 + GUGGCAGGGGUGGGAGGAAAGGGU 24 13321
    BCL11A-11226 + ACAUCGGGAGAGCCGGGU 18 13322
    BCL11A-11227 + CACAUCGGGAGAGCCGGGU 19 13323
    BCL11A-11228 + UCACAUCGGGAGAGCCGGGU 20 13324
    BCL11A-11229 + UUCACAUCGGGAGAGCCGGGU 21 13325
    BCL11A-11230 + GUUCACAUCGGGAGAGCCGGGU 22 13326
    BCL11A-11231 + GGUUCACAUCGGGAGAGCCGGGU 23 13327
    BCL11A-11232 + CGGUUCACAUCGGGAGAGCCGGGU 24 13328
    BCL11A-11233 + GAAAGGGGUGGCAGGGGU 18 13329
    BCL11A-11234 + AGAAAGGGGUGGCAGGGGU 19 13330
    BCL11A-9785 + AAGAAAGGGGUGGCAGGGGU 20 13331
    BCL11A-11235 + GAAGAAAGGGGUGGCAGGGGU 21 13332
    BCL11A-11236 + AGAAGAAAGGGGUGGCAGGGGU 22 13333
    BCL11A-11237 + GAGAAGAAAGGGGUGGCAGGGGU 23 13334
    BCL11A-11238 + AGAGAAGAAAGGGGUGGCAGGGGU 24 13335
    BCL11A-11239 + GCAGGGAAGAUGAAUUGU 18 13336
    BCL11A-11240 + CGCAGGGAAGAUGAAUUGU 19 13337
    BCL11A-9786 + GCGCAGGGAAGAUGAAUUGU 20 13338
    BCL11A-11241 + GGCGCAGGGAAGAUGAAUUGU 21 13339
    BCL11A-11242 + UGGCGCAGGGAAGAUGAAUUGU 22 13340
    BCL11A-11243 + AUGGCGCAGGGAAGAUGAAUUGU 23 13341
    BCL11A-11244 + GAUGGCGCAGGGAAGAUGAAUUGU 24 13342
    BCL11A-11245 + GCGCAGGGAAGAUGAAUU 18 13343
    BCL11A-11246 + GGCGCAGGGAAGAUGAAUU 19 13344
    BCL11A-11247 + UGGCGCAGGGAAGAUGAAUU 20 13345
    BCL11A-11248 + AUGGCGCAGGGAAGAUGAAUU 21 13346
    BCL11A-11249 + GAUGGCGCAGGGAAGAUGAAUU 22 13347
    BCL11A-11250 + AGAUGGCGCAGGGAAGAUGAAUU 23 13348
    BCL11A-11251 + AAGAUGGCGCAGGGAAGAUGAAUU 24 13349
    BCL11A-11252 - GCAGGACUAGAAGCAAAA 18 13350
    BCL11A-11253 - CGCAGGACUAGAAGCAAAA 19 13351
    BCL11A-11254 - GCGCAGGACUAGAAGCAAAA 20 13352
    BCL11A-11255 - CGCGCAGGACUAGAAGCAAAA 21 13353
    BCL11A-11256 - GCGCGCAGGACUAGAAGCAAAA 22 13354
    BCL11A-11257 - AGCGCGCAGGACUAGAAGCAAAA 23 13355
    BCL11A-11258 - GAGCGCGCAGGACUAGAAGCAAAA 24 13356
    BCL11A-6678 - CCCCAGCACUUAAGCAAA 18 13357
    BCL11A-6679 - ACCCCAGCACUUAAGCAAA 19 13358
    BCL11A-5443 - AACCCCAGCACUUAAGCAAA 20 13359
    BCL11A-6680 - AAACCCCAGCACUUAAGCAAA 21 13360
    BCL11A-6681 - CAAACCCCAGCACUUAAGCAAA 22 13361
    BCL11A-6682 - GCAAACCCCAGCACUUAAGCAAA 23 13362
    BCL11A-6683 - GGCAAACCCCAGCACUUAAGCAAA 24 13363
    BCL11A-11259 - CGAGGUAAAAGAGAUAAA 18 13364
    BCL11A-11260 - UCGAGGUAAAAGAGAUAAA 19 13365
    BCL11A-9693 - GUCGAGGUAAAAGAGAUAAA 20 13366
    BCL11A-11261 - AGUCGAGGUAAAAGAGAUAAA 21 13367
    BCL11A-11262 - GAGUCGAGGUAAAAGAGAUAAA 22 13368
    BCL11A-11263 - AGAGUCGAGGUAAAAGAGAUAAA 23 13369
    BCL11A-11264 - GAGAGUCGAGGUAAAAGAGAUAAA 24 13370
    BCL11A-6698 - ACCCCAGCACUUAAGCAA 18 13371
    BCL11A-6699 - AACCCCAGCACUUAAGCAA 19 13372
    BCL11A-6700 - AAACCCCAGCACUUAAGCAA 20 13373
    BCL11A-6701 - CAAACCCCAGCACUUAAGCAA 21 13374
    BCL11A-6702 - GCAAACCCCAGCACUUAAGCAA 22 13375
    BCL11A-6703 - GGCAAACCCCAGCACUUAAGCAA 23 13376
    BCL11A-6704 - AGGCAAACCCCAGCACUUAAGCAA 24 13377
    BCL11A-11265 - CGGCUCUCCCGAUGUGAA 18 13378
    BCL11A-11266 - CCGGCUCUCCCGAUGUGAA 19 13379
    BCL11A-11267 - CCCGGCUCUCCCGAUGUGAA 20 13380
    BCL11A-11268 - ACCCGGCUCUCCCGAUGUGAA 21 13381
    BCL11A-11269 - AACCCGGCUCUCCCGAUGUGAA 22 13382
    BCL11A-11270 - UAACCCGGCUCUCCCGAUGUGAA 23 13383
    BCL11A-11271 - CUAACCCGGCUCUCCCGAUGUGAA 24 13384
    BCL11A-11272 - UCGAGGUAAAAGAGAUAA 18 13385
    BCL11A-11273 - GUCGAGGUAAAAGAGAUAA 19 13386
    BCL11A-9699 - AGUCGAGGUAAAAGAGAUAA 20 13387
    BCL11A-11274 - GAGUCGAGGUAAAAGAGAUAA 21 13388
    BCL11A-11275 - AGAGUCGAGGUAAAAGAGAUAA 22 13389
    BCL11A-11276 - GAGAGUCGAGGUAAAAGAGAUAA 23 13390
    BCL11A-11277 - CGAGAGUCGAGGUAAAAGAGAUAA 24 13391
    BCL11A-11278 - CUCCGAGAGUCGAGGUAA 18 13392
    BCL11A-11279 - CCUCCGAGAGUCGAGGUAA 19 13393
    BCL11A-11280 - ACCUCCGAGAGUCGAGGUAA 20 13394
    BCL11A-11281 - AACCUCCGAGAGUCGAGGUAA 21 13395
    BCL11A-11282 - AAACCUCCGAGAGUCGAGGUAA 22 13396
    BCL11A-11283 - AAAACCUCCGAGAGUCGAGGUAA 23 13397
    BCL11A-11284 - AAAAACCUCCGAGAGUCGAGGUAA 24 13398
    BCL11A-11285 - ACUUGAACUUGCAGCUCA 18 13399
    BCL11A-11286 - CACUUGAACUUGCAGCUCA 19 13400
    BCL11A-9705 - GCACUUGAACUUGCAGCUCA 20 13401
    BCL11A-11287 - CGCACUUGAACUUGCAGCUCA 21 13402
    BCL11A-11288 - CCGCACUUGAACUUGCAGCUCA 22 13403
    BCL11A-11289 - UCCGCACUUGAACUUGCAGCUCA 23 13404
    BCL11A-11290 - GUCCGCACUUGAACUUGCAGCUCA 24 13405
    BCL11A-11291 - GCAAAAGCGAGGGGGAGA 18 13406
    BCL11A-11292 - AGCAAAAGCGAGGGGGAGA 19 13407
    BCL11A-4934 - AAGCAAAAGCGAGGGGGAGA 20 13408
    BCL11A-11293 - GAAGCAAAAGCGAGGGGGAGA 21 13409
    BCL11A-11294 - AGAAGCAAAAGCGAGGGGGAGA 22 13410
    BCL11A-11295 - UAGAAGCAAAAGCGAGGGGGAGA 23 13411
    BCL11A-11296 - CUAGAAGCAAAAGCGAGGGGGAGA 24 13412
    BCL11A-11297 - GACUAGAAGCAAAAGCGA 18 13413
    BCL11A-11298 - GGACUAGAAGCAAAAGCGA 19 13414
    BCL11A-9710 - AGGACUAGAAGCAAAAGCGA 20 13415
    BCL11A-11299 - CAGGACUAGAAGCAAAAGCGA 21 13416
    BCL11A-11300 - GCAGGACUAGAAGCAAAAGCGA 22 13417
    BCL11A-11301 - CGCAGGACUAGAAGCAAAAGCGA 23 13418
    BCL11A-11302 - GCGCAGGACUAGAAGCAAAAGCGA 24 13419
    BCL11A-11303 - AAGCAAAAGCGAGGGGGA 18 13420
    BCL11A-11304 - GAAGCAAAAGCGAGGGGGA 19 13421
    BCL11A-4972 - AGAAGCAAAAGCGAGGGGGA 20 13422
    BCL11A-11305 - UAGAAGCAAAAGCGAGGGGGA 21 13423
    BCL11A-11306 - CUAGAAGCAAAAGCGAGGGGGA 22 13424
    BCL11A-11307 - ACUAGAAGCAAAAGCGAGGGGGA 23 13425
    BCL11A-11308 - GACUAGAAGCAAAAGCGAGGGGGA 24 13426
    BCL11A-11309 - GUCGAGGUAAAAGAGAUA 18 13427
    BCL11A-11310 - AGUCGAGGUAAAAGAGAUA 19 13428
    BCL11A-11311 - GAGUCGAGGUAAAAGAGAUA 20 13429
    BCL11A-11312 - AGAGUCGAGGUAAAAGAGAUA 21 13430
    BCL11A-11313 - GAGAGUCGAGGUAAAAGAGAUA 22 13431
    BCL11A-11314 - CGAGAGUCGAGGUAAAAGAGAUA 23 13432
    BCL11A-11315 - CCGAGAGUCGAGGUAAAAGAGAUA 24 13433
    BCL11A-11316 - GGGACGUCACGUCCGCAC 18 13434
    BCL11A-11317 - AGGGACGUCACGUCCGCAC 19 13435
    BCL11A-11318 - CAGGGACGUCACGUCCGCAC 20 13436
    BCL11A-11319 - GCAGGGACGUCACGUCCGCAC 21 13437
    BCL11A-11320 - CGCAGGGACGUCACGUCCGCAC 22 13438
    BCL11A-11321 - UCGCAGGGACGUCACGUCCGCAC 23 13439
    BCL11A-11322 - UUCGCAGGGACGUCACGUCCGCAC 24 13440
    BCL11A-11323 - AUAAUUAUUAAUAAUCAC 18 13441
    BCL11A-11324 - AAUAAUUAUUAAUAAUCAC 19 13442
    BCL11A-11325 - UAAUAAUUAUUAAUAAUCAC 20 13443
    BCL11A-11326 - AUAAUAAUUAUUAAUAAUCAC 21 13444
    BCL11A-11327 - AAUAAUAAUUAUUAAUAAUCAC 22 13445
    BCL11A-11328 - UAAUAAUAAUUAUUAAUAAUCAC 23 13446
    BCL11A-11329 - GUAAUAAUAAUUAUUAAUAAUCAC 24 13447
    BCL11A-11330 - CAUUUUUAAAUUUUUCAC 18 13448
    BCL11A-11331 - GCAUUUUUAAAUUUUUCAC 19 13449
    BCL11A-11332 - UGCAUUUUUAAAUUUUUCAC 20 13450
    BCL11A-11333 - AUGCAUUUUUAAAUUUUUCAC 21 13451
    BCL11A-11334 - CAUGCAUUUUUAAAUUUUUCAC 22 13452
    BCL11A-11335 - GCAUGCAUUUUUAAAUUUUUCAC 23 13453
    BCL11A-11336 - UGCAUGCAUUUUUAAAUUUUUCAC 24 13454
    BCL11A-11337 - CACGAGAGCGCGCAGGAC 18 13455
    BCL11A-11338 - UCACGAGAGCGCGCAGGAC 19 13456
    BCL11A-11339 - AUCACGAGAGCGCGCAGGAC 20 13457
    BCL11A-11340 - AAUCACGAGAGCGCGCAGGAC 21 13458
    BCL11A-11341 - UAAUCACGAGAGCGCGCAGGAC 22 13459
    BCL11A-11342 - AUAAUCACGAGAGCGCGCAGGAC 23 13460
    BCL11A-11343 - AAUAAUCACGAGAGCGCGCAGGAC 24 13461
    BCL11A-11344 - UCGGCCCGCCCCUCCCCC 18 13462
    BCL11A-11345 - CUCGGCCCGCCCCUCCCCC 19 13463
    BCL11A-9716 - CCUCGGCCCGCCCCUCCCCC 20 13464
    BCL11A-11346 - CCCUCGGCCCGCCCCUCCCCC 21 13465
    BCL11A-11347 - CCCCUCGGCCCGCCCCUCCCCC 22 13466
    BCL11A-11348 - UCCCCUCGGCCCGCCCCUCCCCC 23 13467
    BCL11A-11349 - CUCCCCUCGGCCCGCCCCUCCCCC 24 13468
    BCL11A-11350 - CUCGGCCCGCCCCUCCCC 18 13469
    BCL11A-11351 - CCUCGGCCCGCCCCUCCCC 19 13470
    BCL11A-9717 - CCCUCGGCCCGCCCCUCCCC 20 13471
    BCL11A-11352 - CCCCUCGGCCCGCCCCUCCCC 21 13472
    BCL11A-11353 - UCCCCUCGGCCCGCCCCUCCCC 22 13473
    BCL11A-11354 - CUCCCCUCGGCCCGCCCCUCCCC 23 13474
    BCL11A-11355 - CCUCCCCUCGGCCCGCCCCUCCCC 24 13475
    BCL11A-11356 - CCUCGGCCCGCCCCUCCC 18 13476
    BCL11A-11357 - CCCUCGGCCCGCCCCUCCC 19 13477
    BCL11A-11358 - CCCCUCGGCCCGCCCCUCCC 20 13478
    BCL11A-11359 - UCCCCUCGGCCCGCCCCUCCC 21 13479
    BCL11A-11360 - CUCCCCUCGGCCCGCCCCUCCC 22 13480
    BCL11A-11361 - CCUCCCCUCGGCCCGCCCCUCCC 23 13481
    BCL11A-11362 - CCCUCCCCUCGGCCCGCCCCUCCC 24 13482
    BCL11A-11363 - GGGCCGCGUCUGGCGUCC 18 13483
    BCL11A-11364 - GGGGCCGCGUCUGGCGUCC 19 13484
    BCL11A-11365 - GGGGGCCGCGUCUGGCGUCC 20 13485
    BCL11A-11366 - CGGGGGCCGCGUCUGGCGUCC 21 13486
    BCL11A-11367 - CCGGGGGCCGCGUCUGGCGUCC 22 13487
    BCL11A-11368 - CCCGGGGGCCGCGUCUGGCGUCC 23 13488
    BCL11A-11369 - CCCCGGGGGCCGCGUCUGGCGUCC 24 13489
    BCL11A-11370 - AGGACUAGAAGCAAAAGC 18 13490
    BCL11A-11371 - CAGGACUAGAAGCAAAAGC 19 13491
    BCL11A-11372 - GCAGGACUAGAAGCAAAAGC 20 13492
    BCL11A-11373 - CGCAGGACUAGAAGCAAAAGC 21 13493
    BCL11A-11374 - GCGCAGGACUAGAAGCAAAAGC 22 13494
    BCL11A-11375 - CGCGCAGGACUAGAAGCAAAAGC 23 13495
    BCL11A-11376 - GCGCGCAGGACUAGAAGCAAAAGC 24 13496
    BCL11A-11377 - CCUGACGUUCAAGUUCGC 18 13497
    BCL11A-11378 - UCCUGACGUUCAAGUUCGC 19 13498
    BCL11A-9566 - CUCCUGACGUUCAAGUUCGC 20 13499
    BCL11A-11379 - ACUCCUGACGUUCAAGUUCGC 21 13500
    BCL11A-11380 - GACUCCUGACGUUCAAGUUCGC 22 13501
    BCL11A-11381 - AGACUCCUGACGUUCAAGUUCGC 23 13502
    BCL11A-11382 - CAGACUCCUGACGUUCAAGUUCGC 24 13503
    BCL11A-11383 - UAAUAAUUAUUAAUAAUC 18 13504
    BCL11A-11384 - AUAAUAAUUAUUAAUAAUC 19 13505
    BCL11A-11385 - AAUAAUAAUUAUUAAUAAUC 20 13506
    BCL11A-11386 - UAAUAAUAAUUAUUAAUAAUC 21 13507
    BCL11A-11387 - GUAAUAAUAAUUAUUAAUAAUC 22 13508
    BCL11A-11388 - AGUAAUAAUAAUUAUUAAUAAUC 23 13509
    BCL11A-11389 - UAGUAAUAAUAAUUAUUAAUAAUC 24 13510
    BCL11A-11390 - AAAAACCCUCAUCCCAUC 18 13511
    BCL11A-11391 - AAAAAACCCUCAUCCCAUC 19 13512
    BCL11A-9730 - GAAAAAACCCUCAUCCCAUC 20 13513
    BCL11A-11392 - GGAAAAAACCCUCAUCCCAUC 21 13514
    BCL11A-11393 - GGGAAAAAACCCUCAUCCCAUC 22 13515
    BCL11A-11394 - GGGGAAAAAACCCUCAUCCCAUC 23 13516
    BCL11A-11395 - GGGGGAAAAAACCCUCAUCCCAUC 24 13517
    BCL11A-11396 - CACUUGAACUUGCAGCUC 18 13518
    BCL11A-11397 - GCACUUGAACUUGCAGCUC 19 13519
    BCL11A-9569 - CGCACUUGAACUUGCAGCUC 20 13520
    BCL11A-11398 - CCGCACUUGAACUUGCAGCUC 21 13521
    BCL11A-11399 - UCCGCACUUGAACUUGCAGCUC 22 13522
    BCL11A-11400 - GUCCGCACUUGAACUUGCAGCUC 23 13523
    BCL11A-11401 - CGUCCGCACUUGAACUUGCAGCUC 24 13524
    BCL11A-11402 - UGCAUUUUUAAAUUUUUC 18 13525
    BCL11A-11403 - AUGCAUUUUUAAAUUUUUC 19 13526
    BCL11A-11404 - CAUGCAUUUUUAAAUUUUUC 20 13527
    BCL11A-11405 - GCAUGCAUUUUUAAAUUUUUC 21 13528
    BCL11A-11406 - UGCAUGCAUUUUUAAAUUUUUC 22 13529
    BCL11A-11407 - GUGCAUGCAUUUUUAAAUUUUUC 23 13530
    BCL11A-11408 - UGUGCAUGCAUUUUUAAAUUUUUC 24 13531
    BCL11A-11409 - GAGGUAAAAGAGAUAAAG 18 13532
    BCL11A-11410 - CGAGGUAAAAGAGAUAAAG 19 13533
    BCL11A-9571 - UCGAGGUAAAAGAGAUAAAG 20 13534
    BCL11A-11411 - GUCGAGGUAAAAGAGAUAAAG 21 13535
    BCL11A-11412 - AGUCGAGGUAAAAGAGAUAAAG 22 13536
    BCL11A-11413 - GAGUCGAGGUAAAAGAGAUAAAG 23 13537
    BCL11A-11414 - AGAGUCGAGGUAAAAGAGAUAAAG 24 13538
    BCL11A-11415 - CUUGAACUUGCAGCUCAG 18 13539
    BCL11A-11416 - ACUUGAACUUGCAGCUCAG 19 13540
    BCL11A-9738 - CACUUGAACUUGCAGCUCAG 20 13541
    BCL11A-11417 - GCACUUGAACUUGCAGCUCAG 21 13542
    BCL11A-11418 - CGCACUUGAACUUGCAGCUCAG 22 13543
    BCL11A-11419 - CCGCACUUGAACUUGCAGCUCAG 23 13544
    BCL11A-11420 - UCCGCACUUGAACUUGCAGCUCAG 24 13545
    BCL11A-11421 - GAGAAAAACCUCCGAGAG 18 13546
    BCL11A-11422 - CGAGAAAAACCUCCGAGAG 19 13547
    BCL11A-11423 - ACGAGAAAAACCUCCGAGAG 20 13548
    BCL11A-11424 - CACGAGAAAAACCUCCGAGAG 21 13549
    BCL11A-11425 - UCACGAGAAAAACCUCCGAGAG 22 13550
    BCL11A-11426 - UUCACGAGAAAAACCUCCGAGAG 23 13551
    BCL11A-11427 - UUUCACGAGAAAAACCUCCGAGAG 24 13552
    BCL11A-11428 - ACUAGAAGCAAAAGCGAG 18 13553
    BCL11A-11429 - GACUAGAAGCAAAAGCGAG 19 13554
    BCL11A-9739 - GGACUAGAAGCAAAAGCGAG 20 13555
    BCL11A-11430 - AGGACUAGAAGCAAAAGCGAG 21 13556
    BCL11A-11431 - CAGGACUAGAAGCAAAAGCGAG 22 13557
    BCL11A-11432 - GCAGGACUAGAAGCAAAAGCGAG 23 13558
    BCL11A-11433 - CGCAGGACUAGAAGCAAAAGCGAG 24 13559
    BCL11A-11434 - CGCGUGUGUGGGGGGGAG 18 13560
    BCL11A-11435 - CCGCGUGUGUGGGGGGGAG 19 13561
    BCL11A-11436 - UCCGCGUGUGUGGGGGGGAG 20 13562
    BCL11A-11437 - GUCCGCGUGUGUGGGGGGGAG 21 13563
    BCL11A-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 13564
    BCL11A-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 13565
    BCL11A-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 13566
    BCL11A-11441 - GGCCGCGUCUGGCGUCCG 18 13567
    BCL11A-11442 - GGGCCGCGUCUGGCGUCCG 19 13568
    BCL11A-9574 - GGGGCCGCGUCUGGCGUCCG 20 13569
    BCL11A-11443 - GGGGGCCGCGUCUGGCGUCCG 21 13570
    BCL11A-11444 - CGGGGGCCGCGUCUGGCGUCCG 22 13571
    BCL11A-11445 - CCGGGGGCCGCGUCUGGCGUCCG 23 13572
    BCL11A-11446 - CCCGGGGGCCGCGUCUGGCGUCCG 24 13573
    BCL11A-11447 - GGACUAGAAGCAAAAGCG 18 13574
    BCL11A-11448 - AGGACUAGAAGCAAAAGCG 19 13575
    BCL11A-9748 - CAGGACUAGAAGCAAAAGCG 20 13576
    BCL11A-11449 - GCAGGACUAGAAGCAAAAGCG 21 13577
    BCL11A-11450 - CGCAGGACUAGAAGCAAAAGCG 22 13578
    BCL11A-11451 - GCGCAGGACUAGAAGCAAAAGCG 23 13579
    BCL11A-11452 - CGCGCAGGACUAGAAGCAAAAGCG 24 13580
    BCL11A-11453 - AAUAAUCACGAGAGCGCG 18 13581
    BCL11A-11454 - UAAUAAUCACGAGAGCGCG 19 13582
    BCL11A-11455 - UUAAUAAUCACGAGAGCGCG 20 13583
    BCL11A-11456 - AUUAAUAAUCACGAGAGCGCG 21 13584
    BCL11A-11457 - UAUUAAUAAUCACGAGAGCGCG 22 13585
    BCL11A-11458 - UUAUUAAUAAUCACGAGAGCGCG 23 13586
    BCL11A-11459 - AUUAUUAAUAAUCACGAGAGCGCG 24 13587
    BCL11A-11460 - UCCUGACGUUCAAGUUCG 18 13588
    BCL11A-11461 - CUCCUGACGUUCAAGUUCG 19 13589
    BCL11A-11462 - ACUCCUGACGUUCAAGUUCG 20 13590
    BCL11A-11463 - GACUCCUGACGUUCAAGUUCG 21 13591
    BCL11A-11464 - AGACUCCUGACGUUCAAGUUCG 22 13592
    BCL11A-11465 - CAGACUCCUGACGUUCAAGUUCG 23 13593
    BCL11A-11466 - CCAGACUCCUGACGUUCAAGUUCG 24 13594
    BCL11A-11467 - AGGUAAAAGAGAUAAAGG 18 13595
    BCL11A-11468 - GAGGUAAAAGAGAUAAAGG 19 13596
    BCL11A-9753 - CGAGGUAAAAGAGAUAAAGG 20 13597
    BCL11A-11469 - UCGAGGUAAAAGAGAUAAAGG 21 13598
    BCL11A-11470 - GUCGAGGUAAAAGAGAUAAAGG 22 13599
    BCL11A-11471 - AGUCGAGGUAAAAGAGAUAAAGG 23 13600
    BCL11A-11472 - GAGUCGAGGUAAAAGAGAUAAAGG 24 13601
    BCL11A-11473 - CUAGAAGCAAAAGCGAGG 18 13602
    BCL11A-11474 - ACUAGAAGCAAAAGCGAGG 19 13603
    BCL11A-9755 - GACUAGAAGCAAAAGCGAGG 20 13604
    BCL11A-11475 - GGACUAGAAGCAAAAGCGAGG 21 13605
    BCL11A-11476 - AGGACUAGAAGCAAAAGCGAGG 22 13606
    BCL11A-11477 - CAGGACUAGAAGCAAAAGCGAGG 23 13607
    BCL11A-11478 - GCAGGACUAGAAGCAAAAGCGAGG 24 13608
    BCL11A-11479 - AGAAGCAAAAGCGAGGGG 18 13609
    BCL11A-11480 - UAGAAGCAAAAGCGAGGGG 19 13610
    BCL11A-11481 - CUAGAAGCAAAAGCGAGGGG 20 13611
    BCL11A-11482 - ACUAGAAGCAAAAGCGAGGGG 21 13612
    BCL11A-11483 - GACUAGAAGCAAAAGCGAGGGG 22 13613
    BCL11A-11484 - GGACUAGAAGCAAAAGCGAGGGG 23 13614
    BCL11A-11485 - AGGACUAGAAGCAAAAGCGAGGGG 24 13615
    BCL11A-11486 - GAGUCCGCGUGUGUGGGG 18 13616
    BCL11A-11487 - AGAGUCCGCGUGUGUGGGG 19 13617
    BCL11A-9577 - UAGAGUCCGCGUGUGUGGGG 20 13618
    BCL11A-11488 - UUAGAGUCCGCGUGUGUGGGG 21 13619
    BCL11A-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 13620
    BCL11A-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 13621
    BCL11A-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 13622
    BCL11A-11492 - AGAGUCCGCGUGUGUGGG 18 13623
    BCL11A-11493 - UAGAGUCCGCGUGUGUGGG 19 13624
    BCL11A-9769 - UUAGAGUCCGCGUGUGUGGG 20 13625
    BCL11A-11494 - UUUAGAGUCCGCGUGUGUGGG 21 13626
    BCL11A-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 13627
    BCL11A-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 13628
    BCL11A-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 13629
    BCL11A-11498 - UAGAGUCCGCGUGUGUGG 18 13630
    BCL11A-11499 - UUAGAGUCCGCGUGUGUGG 19 13631
    BCL11A-9578 - UUUAGAGUCCGCGUGUGUGG 20 13632
    BCL11A-11500 - UUUUAGAGUCCGCGUGUGUGG 21 13633
    BCL11A-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 13634
    BCL11A-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 13635
    BCL11A-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 13636
    BCL11A-11504 - CGCUCGCUGCGGCCACUG 18 13637
    BCL11A-11505 - GCGCUCGCUGCGGCCACUG 19 13638
    BCL11A-11506 - GGCGCUCGCUGCGGCCACUG 20 13639
    BCL11A-11507 - CGGCGCUCGCUGCGGCCACUG 21 13640
    BCL11A-11508 - GCGGCGCUCGCUGCGGCCACUG 22 13641
    BCL11A-11509 - CGCGGCGCUCGCUGCGGCCACUG 23 13642
    BCL11A-11510 - CCGCGGCGCUCGCUGCGGCCACUG 24 13643
    BCL11A-11511 - GGAUGUCAAAAGGCACUG 18 13644
    BCL11A-11512 - UGGAUGUCAAAAGGCACUG 19 13645
    BCL11A-11513 - UUGGAUGUCAAAAGGCACUG 20 13646
    BCL11A-11514 - UUUGGAUGUCAAAAGGCACUG 21 13647
    BCL11A-11515 - UUUUGGAUGUCAAAAGGCACUG 22 13648
    BCL11A-11516 - AUUUUGGAUGUCAAAAGGCACUG 23 13649
    BCL11A-11517 - UAUUUUGGAUGUCAAAAGGCACUG 24 13650
    BCL11A-11518 - UUUUAGAGUCCGCGUGUG 18 13651
    BCL11A-11519 - AUUUUAGAGUCCGCGUGUG 19 13652
    BCL11A-9581 - CAUUUUAGAGUCCGCGUGUG 20 13653
    BCL11A-11520 - UCAUUUUAGAGUCCGCGUGUG 21 13654
    BCL11A-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 13655
    BCL11A-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 13656
    BCL11A-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 13657
    BCL11A-11524 - UUAGAGUCCGCGUGUGUG 18 13658
    BCL11A-11525 - UUUAGAGUCCGCGUGUGUG 19 13659
    BCL11A-9776 - UUUUAGAGUCCGCGUGUGUG 20 13660
    BCL11A-11526 - AUUUUAGAGUCCGCGUGUGUG 21 13661
    BCL11A-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 13662
    BCL11A-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 13663
    BCL11A-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 13664
    BCL11A-11530 - AAAAAACCCUCAUCCCAU 18 13665
    BCL11A-11531 - GAAAAAACCCUCAUCCCAU 19 13666
    BCL11A-11532 - GGAAAAAACCCUCAUCCCAU 20 13667
    BCL11A-11533 - GGGAAAAAACCCUCAUCCCAU 21 13668
    BCL11A-11534 - GGGGAAAAAACCCUCAUCCCAU 22 13669
    BCL11A-11535 - GGGGGAAAAAACCCUCAUCCCAU 23 13670
    BCL11A-11536 - AGGGGGAAAAAACCCUCAUCCCAU 24 13671
    BCL11A-11537 - UAACCCGGCUCUCCCGAU 18 13672
    BCL11A-11538 - CUAACCCGGCUCUCCCGAU 19 13673
    BCL11A-11539 - UCUAACCCGGCUCUCCCGAU 20 13674
    BCL11A-11540 - UUCUAACCCGGCUCUCCCGAU 21 13675
    BCL11A-11541 - UUUCUAACCCGGCUCUCCCGAU 22 13676
    BCL11A-11542 - CUUUCUAACCCGGCUCUCCCGAU 23 13677
    BCL11A-11543 - UCUUUCUAACCCGGCUCUCCCGAU 24 13678
    BCL11A-11544 - UUUUCACGAGAAAAACCU 18 13679
    BCL11A-11545 - UUUUUCACGAGAAAAACCU 19 13680
    BCL11A-11546 - AUUUUUCACGAGAAAAACCU 20 13681
    BCL11A-11547 - AAUUUUUCACGAGAAAAACCU 21 13682
    BCL11A-11548 - AAAUUUUUCACGAGAAAAACCU 22 13683
    BCL11A-11549 - UAAAUUUUUCACGAGAAAAACCU 23 13684
    BCL11A-11550 - UUAAAUUUUUCACGAGAAAAACCU 24 13685
    BCL11A-11551 - GCACUUGAACUUGCAGCU 18 13686
    BCL11A-11552 - CGCACUUGAACUUGCAGCU 19 13687
    BCL11A-11553 - CCGCACUUGAACUUGCAGCU 20 13688
    BCL11A-11554 - UCCGCACUUGAACUUGCAGCU 21 13689
    BCL11A-11555 - GUCCGCACUUGAACUUGCAGCU 22 13690
    BCL11A-11556 - CGUCCGCACUUGAACUUGCAGCU 23 13691
    BCL11A-11557 - ACGUCCGCACUUGAACUUGCAGCU 24 13692
    BCL11A-11558 - CUGAUGAAGAUAUUUUCU 18 13693
    BCL11A-11559 - ACUGAUGAAGAUAUUUUCU 19 13694
    BCL11A-11560 - CACUGAUGAAGAUAUUUUCU 20 13695
    BCL11A-11561 - GCACUGAUGAAGAUAUUUUCU 21 13696
    BCL11A-11562 - GGCACUGAUGAAGAUAUUUUCU 22 13697
    BCL11A-11563 - AGGCACUGAUGAAGAUAUUUUCU 23 13698
    BCL11A-11564 - AAGGCACUGAUGAAGAUAUUUUCU 24 13699
    BCL11A-11565 - UGAUGUGUGUCCAUUGGU 18 13700
    BCL11A-11566 - CUGAUGUGUGUCCAUUGGU 19 13701
    BCL11A-11567 - CCUGAUGUGUGUCCAUUGGU 20 13702
    BCL11A-11568 - CCCUGAUGUGUGUCCAUUGGU 21 13703
    BCL11A-11569 - CCCCUGAUGUGUGUCCAUUGGU 22 13704
    BCL11A-11570 - GCCCCUGAUGUGUGUCCAUUGGU 23 13705
    BCL11A-11571 - AGCCCCUGAUGUGUGUCCAUUGGU 24 13706
    BCL11A-11572 - AUUUUAGAGUCCGCGUGU 18 13707
    BCL11A-11573 - CAUUUUAGAGUCCGCGUGU 19 13708
    BCL11A-11574 - UCAUUUUAGAGUCCGCGUGU 20 13709
    BCL11A-11575 - UUCAUUUUAGAGUCCGCGUGU 21 13710
    BCL11A-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 13711
    BCL11A-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 13712
    BCL11A-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 13713
    BCL11A-11579 - UUUAGAGUCCGCGUGUGU 18 13714
    BCL11A-11580 - UUUUAGAGUCCGCGUGUGU 19 13715
    BCL11A-9586 - AUUUUAGAGUCCGCGUGUGU 20 13716
    BCL11A-11581 - CAUUUUAGAGUCCGCGUGUGU 21 13717
    BCL11A-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 13718
    BCL11A-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 13719
    BCL11A-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 13720
    BCL11A-11585 - AUUGCCGUGUAUGCACUU 18 13721
    BCL11A-11586 - CAUUGCCGUGUAUGCACUU 19 13722
    BCL11A-11587 - CCAUUGCCGUGUAUGCACUU 20 13723
    BCL11A-11588 - ACCAUUGCCGUGUAUGCACUU 21 13724
    BCL11A-11589 - AACCAUUGCCGUGUAUGCACUU 22 13725
    BCL11A-11590 - GAACCAUUGCCGUGUAUGCACUU 23 13726
    BCL11A-11591 - GGAACCAUUGCCGUGUAUGCACUU 24 13727
  • Table 19D provides exemplary targeting domains for knocking down the BCL13A gene selected according to the fourth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to 1 kb upstream and downstream of a TSS, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL13A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 19D
    4th Tier
    DNA Target Site SEQ
    gRNA Name Strand Targeting Domain Length ID NO:
    BCL11A-11592 + CUCACCUCUUUUCUCCCC 18 13728
    BCL11A-11593 + UCUCACCUCUUUUCUCCCC 19 13729
    BCL11A-10076 + GUCUCACCUCUUUUCUCCCC 20 13730
    BCL11A-11594 + AGUCUCACCUCUUUUCUCCCC 21 13731
    BCL11A-11595 + CAGUCUCACCUCUUUUCUCCCC 22 13732
    BCL11A-11596 + CCAGUCUCACCUCUUUUCUCCCC 23 13733
    BCL11A-11597 + GCCAGUCUCACCUCUUUUCUCCCC 24 13734
    BCL11A-11598 + AAAAGAAAAAAAUAGAGC 18 13735
    BCL11A-11599 + AAAAAGAAAAAAAUAGAGC 19 13736
    BCL11A-11600 + AAAAAAGAAAAAAAUAGAGC 20 13737
    BCL11A-11601 + CAAAAAAGAAAAAAAUAGAGC 21 13738
    BCL11A-11602 + UCAAAAAAGAAAAAAAUAGAGC 22 13739
    BCL11A-11603 + UUCAAAAAAGAAAAAAAUAGAGC 23 13740
    BCL11A-11604 + AUUCAAAAAAGAAAAAAAUAGAGC 24 13741
    BCL11A-11605 + GGCGGGGCGGGGGGGGAG 18 13742
    BCL11A-11606 + UGGCGGGGCGGGGGGGGAG 19 13743
    BCL11A-10153 + CUGGCGGGGCGGGGGGGGAG 20 13744
    BCL11A-11607 + ACUGGCGGGGCGGGGGGGGAG 21 13745
    BCL11A-11608 + AACUGGCGGGGCGGGGGGGGAG 22 13746
    BCL11A-11609 + AAACUGGCGGGGCGGGGGGGGAG 23 13747
    BCL11A-11610 + AAAACUGGCGGGGCGGGGGGGGAG 24 13748
    BCL11A-11611 + AGGGAGCGCACGGCAACG 18 13749
    BCL11A-11612 + GAGGGAGCGCACGGCAACG 19 13750
    BCL11A-10155 + GGAGGGAGCGCACGGCAACG 20 13751
    BCL11A-11613 + GGGAGGGAGCGCACGGCAACG 21 13752
    BCL11A-11614 + UGGGAGGGAGCGCACGGCAACG 22 13753
    BCL11A-11615 + GUGGGAGGGAGCGCACGGCAACG 23 13754
    BCL11A-11616 + GGUGGGAGGGAGCGCACGGCAACG 24 13755
    BCL11A-11617 + CCCCCCCAUUUUCUUACG 18 13756
    BCL11A-11618 + ACCCCCCCAUUUUCUUACG 19 13757
    BCL11A-11619 + UACCCCCCCAUUUUCUUACG 20 13758
    BCL11A-11620 + CUACCCCCCCAUUUUCUUACG 21 13759
    BCL11A-11621 + CCUACCCCCCCAUUUUCUUACG 22 13760
    BCL11A-11622 + CCCUACCCCCCCAUUUUCUUACG 23 13761
    BCL11A-11623 + UCCCUACCCCCCCAUUUUCUUACG 24 13762
    BCL11A-11624 + GGGCGGAGGGAAGCCAGG 18 13763
    BCL11A-11625 + CGGGCGGAGGGAAGCCAGG 19 13764
    BCL11A-11626 + GCGGGCGGAGGGAAGCCAGG 20 13765
    BCL11A-11627 + CGCGGGCGGAGGGAAGCCAGG 21 13766
    BCL11A-11628 + GCGCGGGCGGAGGGAAGCCAGG 22 13767
    BCL11A-11629 + AGCGCGGGCGGAGGGAAGCCAGG 23 13768
    BCL11A-11630 + AAGCGCGGGCGGAGGGAAGCCAGG 24 13769
    BCL11A-11631 + CGGAAAGGAGGAAAGAGG 18 13770
    BCL11A-11632 + GCGGAAAGGAGGAAAGAGG 19 13771
    BCL11A-10187 + GGCGGAAAGGAGGAAAGAGG 20 13772
    BCL11A-11633 + CGGCGGAAAGGAGGAAAGAGG 21 13773
    BCL11A-11634 + GCGGCGGAAAGGAGGAAAGAGG 22 13774
    BCL11A-11635 + AGCGGCGGAAAGGAGGAAAGAGG 23 13775
    BCL11A-11636 + AAGCGGCGGAAAGGAGGAAAGAGG 24 13776
    BCL11A-11637 + AAACUGGCGGGGCGGGGG 18 13777
    BCL11A-11638 + AAAACUGGCGGGGCGGGGG 19 13778
    BCL11A-10209 + CAAAACUGGCGGGGCGGGGG 20 13779
    BCL11A-11639 + GCAAAACUGGCGGGGCGGGGG 21 13780
    BCL11A-11640 + UGCAAAACUGGCGGGGCGGGGG 22 13781
    BCL11A-11641 + UUGCAAAACUGGCGGGGCGGGGG 23 13782
    BCL11A-11642 + UUUGCAAAACUGGCGGGGCGGGGG 24 13783
    BCL11A-11643 + CCACCCCCAGGUUUGCAU 18 13784
    BCL11A-11644 + CCCACCCCCAGGUUUGCAU 19 13785
    BCL11A-11645 + UCCCACCCCCAGGUUUGCAU 20 13786
    BCL11A-11646 + CUCCCACCCCCAGGUUUGCAU 21 13787
    BCL11A-11647 + GCUCCCACCCCCAGGUUUGCAU 22 13788
    BCL11A-11648 + AGCUCCCACCCCCAGGUUUGCAU 23 13789
    BCL11A-11649 + CAGCUCCCACCCCCAGGUUUGCAU 24 13790
    BCL11A-11650 + GCCUAAGUUUGGAGGGCU 18 13791
    BCL11A-11651 + AGCCUAAGUUUGGAGGGCU 19 13792
    BCL11A-11652 + CAGCCUAAGUUUGGAGGGCU 20 13793
    BCL11A-11653 + CCAGCCUAAGUUUGGAGGGCU 21 13794
    BCL11A-11654 + UCCAGCCUAAGUUUGGAGGGCU 22 13795
    BCL11A-11655 + AUCCAGCCUAAGUUUGGAGGGCU 23 13796
    BCL11A-11656 + AAUCCAGCCUAAGUUUGGAGGGCU 24 13797
    BCL11A-11657 + CCACUUUCUCACUAUUGU 18 13798
    BCL11A-11658 + GCCACUUUCUCACUAUUGU 19 13799
    BCL11A-10251 + UGCCACUUUCUCACUAUUGU 20 13800
    BCL11A-11659 + GUGCCACUUUCUCACUAUUGU 21 13801
    BCL11A-11660 + AGUGCCACUUUCUCACUAUUGU 22 13802
    BCL11A-11661 + CAGUGCCACUUUCUCACUAUUGU 23 13803
    BCL11A-11662 + ACAGUGCCACUUUCUCACUAUUGU 24 13804
    BCL11A-11663 - UUAUUUCUCUUUUCGAAA 18 13805
    BCL11A-11664 - UUUAUUUCUCUUUUCGAAA 19 13806
    BCL11A-10027 - CUUUAUUUCUCUUUUCGAAA 20 13807
    BCL11A-11665 - GCUUUAUUUCUCUUUUCGAAA 21 13808
    BCL11A-11666 - CGCUUUAUUUCUCUUUUCGAAA 22 13809
    BCL11A-11667 - CCGCUUUAUUUCUCUUUUCGAAA 23 13810
    BCL11A-11668 - GCCGCUUUAUUUCUCUUUUCGAAA 24 13811
    BCL11A-11669 - CGGCGGCGGGGAGGGGAA 18 13812
    BCL11A-11670 - GCGGCGGCGGGGAGGGGAA 19 13813
    BCL11A-11671 - GGCGGCGGCGGGGAGGGGAA 20 13814
    BCL11A-11672 - CGGCGGCGGCGGGGAGGGGAA 21 13815
    BCL11A-11673 - GCGGCGGCGGCGGGGAGGGGAA 22 13816
    BCL11A-11674 - CGCGGCGGCGGCGGGGAGGGGAA 23 13817
    BCL11A-11675 - GCGCGGCGGCGGCGGGGAGGGGAA 24 13818
    BCL11A-11676 - UGGGGGGGUAGGGAGGGA 18 13819
    BCL11A-11677 - AUGGGGGGGUAGGGAGGGA 19 13820
    BCL11A-11678 - AAUGGGGGGGUAGGGAGGGA 20 13821
    BCL11A-11679 - AAAUGGGGGGGUAGGGAGGGA 21 13822
    BCL11A-11680 - AAAAUGGGGGGGUAGGGAGGGA 22 13823
    BCL11A-11681 - GAAAAUGGGGGGGUAGGGAGGGA 23 13824
    BCL11A-11682 - AGAAAAUGGGGGGGUAGGGAGGGA 24 13825
    BCL11A-11683 - AAAAUGGGGGGGUAGGGA 18 13826
    BCL11A-11684 - GAAAAUGGGGGGGUAGGGA 19 13827
    BCL11A-10049 - AGAAAAUGGGGGGGUAGGGA 20 13828
    BCL11A-11685 - AAGAAAAUGGGGGGGUAGGGA 21 13829
    BCL11A-11686 - UAAGAAAAUGGGGGGGUAGGGA 22 13830
    BCL11A-11687 - GUAAGAAAAUGGGGGGGUAGGGA 23 13831
    BCL11A-11688 - CGUAAGAAAAUGGGGGGGUAGGGA 24 13832
    BCL11A-11689 - AAGGGGCCCCCGGCGCUC 18 13833
    BCL11A-11690 - AAAGGGGCCCCCGGCGCUC 19 13834
    BCL11A-11691 - GAAAGGGGCCCCCGGCGCUC 20 13835
    BCL11A-11692 - GGAAAGGGGCCCCCGGCGCUC 21 13836
    BCL11A-11693 - UGGAAAGGGGCCCCCGGCGCUC 22 13837
    BCL11A-11694 - GUGGAAAGGGGCCCCCGGCGCUC 23 13838
    BCL11A-11695 - UGUGGAAAGGGGCCCCCGGCGCUC 24 13839
    BCL11A-11696 - CUUUUGUUCCGGCCAGAG 18 13840
    BCL11A-11697 - CCUUUUGUUCCGGCCAGAG 19 13841
    BCL11A-11698 - GCCUUUUGUUCCGGCCAGAG 20 13842
    BCL11A-11699 - CGCCUUUUGUUCCGGCCAGAG 21 13843
    BCL11A-11700 - CCGCCUUUUGUUCCGGCCAGAG 22 13844
    BCL11A-11701 - GCCGCCUUUUGUUCCGGCCAGAG 23 13845
    BCL11A-11702 - UGCCGCCUUUUGUUCCGGCCAGAG 24 13846
    BCL11A-11703 - GUGGGUGUGCGUACGGAG 18 13847
    BCL11A-11704 - AGUGGGUGUGCGUACGGAG 19 13848
    BCL11A-11705 - AAGUGGGUGUGCGUACGGAG 20 13849
    BCL11A-11706 - GAAGUGGGUGUGCGUACGGAG 21 13850
    BCL11A-11707 - GGAAGUGGGUGUGCGUACGGAG 22 13851
    BCL11A-11708 - GGGAAGUGGGUGUGCGUACGGAG 23 13852
    BCL11A-11709 - GGGGAAGUGGGUGUGCGUACGGAG 24 13853
    BCL11A-11710 - CCGGCGCUCCUGAGUCCG 18 13854
    BCL11A-11711 - CCCGGCGCUCCUGAGUCCG 19 13855
    BCL11A-10172 - CCCCGGCGCUCCUGAGUCCG 20 13856
    BCL11A-11712 - CCCCCGGCGCUCCUGAGUCCG 21 13857
    BCL11A-11713 - GCCCCCGGCGCUCCUGAGUCCG 22 13858
    BCL11A-11714 - GGCCCCCGGCGCUCCUGAGUCCG 23 13859
    BCL11A-11715 - GGGCCCCCGGCGCUCCUGAGUCCG 24 13860
    BCL11A-11716 - CAGCCCUCCAAACUUAGG 18 13861
    BCL11A-11717 - GCAGCCCUCCAAACUUAGG 19 13862
    BCL11A-11718 - CGCAGCCCUCCAAACUUAGG 20 13863
    BCL11A-11719 - CCGCAGCCCUCCAAACUUAGG 21 13864
    BCL11A-11720 - CCCGCAGCCCUCCAAACUUAGG 22 13865
    BCL11A-11721 - ACCCGCAGCCCUCCAAACUUAGG 23 13866
    BCL11A-11722 - GACCCGCAGCCCUCCAAACUUAGG 24 13867
    BCL11A-11723 - CUCACCGUAAGAAAAUGG 18 13868
    BCL11A-11724 - ACUCACCGUAAGAAAAUGG 19 13869
    BCL11A-10214 - CACUCACCGUAAGAAAAUGG 20 13870
    BCL11A-11725 - CCACUCACCGUAAGAAAAUGG 21 13871
    BCL11A-11726 - CCCACUCACCGUAAGAAAAUGG 22 13872
    BCL11A-11727 - UCCCACUCACCGUAAGAAAAUGG 23 13873
    BCL11A-11728 - UUCCCACUCACCGUAAGAAAAUGG 24 13874
    BCL11A-11729 - GAGGCUCAGCUCUCAACU 18 13875
    BCL11A-11730 - GGAGGCUCAGCUCUCAACU 19 13876
    BCL11A-11731 - UGGAGGCUCAGCUCUCAACU 20 13877
    BCL11A-11732 - UUGGAGGCUCAGCUCUCAACU 21 13878
    BCL11A-11733 - CUUGGAGGCUCAGCUCUCAACU 22 13879
    BCL11A-11734 - ACUUGGAGGCUCAGCUCUCAACU 23 13880
    BCL11A-11735 - AACUUGGAGGCUCAGCUCUCAACU 24 13881
    BCL11A-11736 - CAACUCACAUGCAAACCU 18 13882
    BCL11A-11737 - ACAACUCACAUGCAAACCU 19 13883
    BCL11A-10235 - AACAACUCACAUGCAAACCU 20 13884
    BCL11A-11738 - GAACAACUCACAUGCAAACCU 21 13885
    BCL11A-11739 - CGAACAACUCACAUGCAAACCU 22 13886
    BCL11A-11740 - GCGAACAACUCACAUGCAAACCU 23 13887
    BCL11A-11741 - UGCGAACAACUCACAUGCAAACCU 24 13888
    BCL11A-10351 - UUGAAUAAUCUUUCAUUU 18 13889
    BCL11A-10352 - UUUGAAUAAUCUUUCAUUU 19 13890
    BCL11A-10353 - UUUUGAAUAAUCUUUCAUUU 20 13891
    BCL11A-10354 - UUUUUGAAUAAUCUUUCAUUU 21 13892
    BCL11A-10355 - UUUUUUGAAUAAUCUUUCAUUU 22 13893
    BCL11A-10356 - CUUUUUUGAAUAAUCUUUCAUUU 23 13894
    BCL11A-10357 - UCUUUUUUGAAUAAUCUUUCAUUU 24 13895
    BCL11A-11742 - GCUCUAUUUUUUUCUUUU 18 13896
    BCL11A-11743 - CGCUCUAUUUUUUUCUUUU 19 13897
    BCL11A-11744 - UCGCUCUAUUUUUUUCUUUU 20 13898
    BCL11A-11745 - CUCGCUCUAUUUUUUUCUUUU 21 13899
    BCL11A-11746 - UCUCGCUCUAUUUUUUUCUUUU 22 13900
    BCL11A-11747 - CUCUCGCUCUAUUUUUUUCUUUU 23 13901
    BCL11A-11748 - ACUCUCGCUCUAUUUUUUUCUUUU 24 13902
  • Table 19E provides exemplary targeting domains for knocking down the BCL11A gene selected according to the fifth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to 1 kb upstream and downstream of a TSS, and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL13A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 19E
    5th Tier
    Target
    DNA Site SEQ
    gRNA Name Strand Targeting Domain Length ID NO:
    BCL11A-11749 + AUUCAAAAAAGAAAAAAA 18 13903
    BCL11A-11750 + UAUUCAAAAAAGAAAAAAA 19 13904
    BCL11A-11751 + UUAUUCAAAAAAGAAAAAAA 20 13905
    BCL11A-11752 + AUUAUUCAAAAAAGAAAAAAA 21 13906
    BCL11A-11753 + GAUUAUUCAAAAAAGAAAAAAA 22 13907
    BCL11A-11754 + AGAUUAUUCAAAAAAGAAAAAAA 23 13908
    BCL11A-11755 + AAGAUUAUUCAAAAAAGAAAAAAA 24 13909
    BCL11A-11756 + AUGAAAGAUUAUUCAAAA 18 13910
    BCL11A-11757 + AAUGAAAGAUUAUUCAAAA 19 13911
    BCL11A-11758 + AAAUGAAAGAUUAUUCAAAA 20 13912
    BCL11A-11759 + AAAAUGAAAGAUUAUUCAAAA 21 13913
    BCL11A-11760 + UAAAAUGAAAGAUUAUUCAAAA 22 13914
    BCL11A-11761 + CUAAAAUGAAAGAUUAUUCAAAA 23 13915
    BCL11A-11762 + UCUAAAAUGAAAGAUUAUUCAAAA 24 13916
    BCL11A-11763 + UGCAUUCCUUUUCGAAAA 18 13917
    BCL11A-11764 + UUGCAUUCCUUUUCGAAAA 19 13918
    BCL11A-11765 + AUUGCAUUCCUUUUCGAAAA 20 13919
    BCL11A-11766 + CAUUGCAUUCCUUUUCGAAAA 21 13920
    BCL11A-11767 + UCAUUGCAUUCCUUUUCGAAAA 22 13921
    BCL11A-11768 + AUCAUUGCAUUCCUUUUCGAAAA 23 13922
    BCL11A-11769 + AAUCAUUGCAUUCCUUUUCGAAAA 24 13923
    BCL11A-11770 + GCGGCGGAAAGGAGGAAA 18 13924
    BCL11A-11771 + AGCGGCGGAAAGGAGGAAA 19 13925
    BCL11A-11772 + AAGCGGCGGAAAGGAGGAAA 20 13926
    BCL11A-11773 + AAAGCGGCGGAAAGGAGGAAA 21 13927
    BCL11A-11774 + UAAAGCGGCGGAAAGGAGGAAA 22 13928
    BCL11A-11775 + AUAAAGCGGCGGAAAGGAGGAAA 23 13929
    BCL11A-11776 + AAUAAAGCGGCGGAAAGGAGGAAA 24 13930
    BCL11A-11777 + GCCCGCGCGGCCUGGAAA 18 13931
    BCL11A-11778 + AGCCCGCGCGGCCUGGAAA 19 13932
    BCL11A-11779 + GAGCCCGCGCGGCCUGGAAA 20 13933
    BCL11A-11780 + GGAGCCCGCGCGGCCUGGAAA 21 13934
    BCL11A-11781 + AGGAGCCCGCGCGGCCUGGAAA 22 13935
    BCL11A-11782 + CAGGAGCCCGCGCGGCCUGGAAA 23 13936
    BCL11A-11783 + CCAGGAGCCCGCGCGGCCUGGAAA 24 13937
    BCL11A-10371 + ACACACGCGGACUCUAAA 18 13938
    BCL11A-10372 + CACACACGCGGACUCUAAA 19 13939
    BCL11A-10373 + CCACACACGCGGACUCUAAA 20 13940
    BCL11A-10374 + CCCACACACGCGGACUCUAAA 21 13941
    BCL11A-10375 + CCCCACACACGCGGACUCUAAA 22 13942
    BCL11A-10376 + CCCCCACACACGCGGACUCUAAA 23 13943
    BCL11A-10377 + CCCCCCACACACGCGGACUCUAAA 24 13944
    BCL11A-11784 + AUUGCAUUCCUUUUCGAA 18 13945
    BCL11A-11785 + CAUUGCAUUCCUUUUCGAA 19 13946
    BCL11A-11786 + UCAUUGCAUUCCUUUUCGAA 20 13947
    BCL11A-11787 + AUCAUUGCAUUCCUUUUCGAA 21 13948
    BCL11A-11788 + AAUCAUUGCAUUCCUUUUCGAA 22 13949
    BCL11A-11789 + GAAUCAUUGCAUUCCUUUUCGAA 23 13950
    BCL11A-11790 + GGAAUCAUUGCAUUCCUUUUCGAA 24 13951
    BCL11A-11791 + AGAAAUAAAGCGGCGGAA 18 13952
    BCL11A-11792 + GAGAAAUAAAGCGGCGGAA 19 13953
    BCL11A-10031 + AGAGAAAUAAAGCGGCGGAA 20 13954
    BCL11A-11793 + AAGAGAAAUAAAGCGGCGGAA 21 13955
    BCL11A-11794 + AAAGAGAAAUAAAGCGGCGGAA 22 13956
    BCL11A-11795 + AAAAGAGAAAUAAAGCGGCGGAA 23 13957
    BCL11A-11796 + GAAAAGAGAAAUAAAGCGGCGGAA 24 13958
    BCL11A-11797 + CCCGAGGAGAGGACAGCA 18 13959
    BCL11A-11798 + GCCCGAGGAGAGGACAGCA 19 13960
    BCL11A-11799 + UGCCCGAGGAGAGGACAGCA 20 13961
    BCL11A-11800 + UUGCCCGAGGAGAGGACAGCA 21 13962
    BCL11A-11801 + UUUGCCCGAGGAGAGGACAGCA 22 13963
    BCL11A-11802 + CUUUGCCCGAGGAGAGGACAGCA 23 13964
    BCL11A-11803 + ACUUUGCCCGAGGAGAGGACAGCA 24 13965
    BCL11A-11804 + CCAAGUUACAGCUCCGCA 18 13966
    BCL11A-11805 + UCCAAGUUACAGCUCCGCA 19 13967
    BCL11A-11806 + CUCCAAGUUACAGCUCCGCA 20 13968
    BCL11A-11807 + CCUCCAAGUUACAGCUCCGCA 21 13969
    BCL11A-11808 + GCCUCCAAGUUACAGCUCCGCA 22 13970
    BCL11A-11809 + AGCCUCCAAGUUACAGCUCCGCA 23 13971
    BCL11A-11810 + GAGCCUCCAAGUUACAGCUCCGCA 24 13972
    BCL11A-11811 + GAGCCGGCACAAAAGGCA 18 13973
    BCL11A-11812 + GGAGCCGGCACAAAAGGCA 19 13974
    BCL11A-11813 + AGGAGCCGGCACAAAAGGCA 20 13975
    BCL11A-11814 + GAGGAGCCGGCACAAAAGGCA 21 13976
    BCL11A-11815 + CGAGGAGCCGGCACAAAAGGCA 22 13977
    BCL11A-11816 + GCGAGGAGCCGGCACAAAAGGCA 23 13978
    BCL11A-11817 + CGCGAGGAGCCGGCACAAAAGGCA 24 13979
    BCL11A-11818 + AAAUAGAGCGAGAGUGCA 18 13980
    BCL11A-11819 + AAAAUAGAGCGAGAGUGCA 19 13981
    BCL11A-11820 + AAAAAUAGAGCGAGAGUGCA 20 13982
    BCL11A-11821 + AAAAAAUAGAGCGAGAGUGCA 21 13983
    BCL11A-11822 + AAAAAAAUAGAGCGAGAGUGCA 22 13984
    BCL11A-11823 + GAAAAAAAUAGAGCGAGAGUGCA 23 13985
    BCL11A-11824 + AGAAAAAAAUAGAGCGAGAGUGCA 24 13986
    BCL11A-11825 + CCGCGCGGCCUGGAAAGA 18 13987
    BCL11A-11826 + CCCGCGCGGCCUGGAAAGA 19 13988
    BCL11A-10040 + GCCCGCGCGGCCUGGAAAGA 20 13989
    BCL11A-11827 + AGCCCGCGCGGCCUGGAAAGA 21 13990
    BCL11A-11828 + GAGCCCGCGCGGCCUGGAAAGA 22 13991
    BCL11A-11829 + GGAGCCCGCGCGGCCUGGAAAGA 23 13992
    BCL11A-11830 + AGGAGCCCGCGCGGCCUGGAAAGA 24 13993
    BCL11A-11831 + AAAAAAGAAAAAAAUAGA 18 13994
    BCL11A-11832 + CAAAAAAGAAAAAAAUAGA 19 13995
    BCL11A-11833 + UCAAAAAAGAAAAAAAUAGA 20 13996
    BCL11A-11834 + UUCAAAAAAGAAAAAAAUAGA 21 13997
    BCL11A-11835 + AUUCAAAAAAGAAAAAAAUAGA 22 13998
    BCL11A-11836 + UAUUCAAAAAAGAAAAAAAUAGA 23 13999
    BCL11A-11837 + UUAUUCAAAAAAGAAAAAAAUAGA 24 14000
    BCL11A-11838 + CAGCUCCGCAGCGGGCGA 18 14001
    BCL11A-11839 + ACAGCUCCGCAGCGGGCGA 19 14002
    BCL11A-10044 + UACAGCUCCGCAGCGGGCGA 20 14003
    BCL11A-11840 + UUACAGCUCCGCAGCGGGCGA 21 14004
    BCL11A-11841 + GUUACAGCUCCGCAGCGGGCGA 22 14005
    BCL11A-11842 + AGUUACAGCUCCGCAGCGGGCGA 23 14006
    BCL11A-11843 + AAGUUACAGCUCCGCAGCGGGCGA 24 14007
    BCL11A-11844 + GGAAACUUUGCCCGAGGA 18 14008
    BCL11A-11845 + GGGAAACUUUGCCCGAGGA 19 14009
    BCL11A-11846 + CGGGAAACUUUGCCCGAGGA 20 14010
    BCL11A-11847 + UCGGGAAACUUUGCCCGAGGA 21 14011
    BCL11A-11848 + CUCGGGAAACUUUGCCCGAGGA 22 14012
    BCL11A-11849 + GCUCGGGAAACUUUGCCCGAGGA 23 14013
    BCL11A-11850 + CGCUCGGGAAACUUUGCCCGAGGA 24 14014
    BCL11A-11851 + AAGCGGCGGAAAGGAGGA 18 14015
    BCL11A-11852 + AAAGCGGCGGAAAGGAGGA 19 14016
    BCL11A-11853 + UAAAGCGGCGGAAAGGAGGA 20 14017
    BCL11A-11854 + AUAAAGCGGCGGAAAGGAGGA 21 14018
    BCL11A-11855 + AAUAAAGCGGCGGAAAGGAGGA 22 14019
    BCL11A-11856 + AAAUAAAGCGGCGGAAAGGAGGA 23 14020
    BCL11A-11857 + GAAAUAAAGCGGCGGAAAGGAGGA 24 14021
    BCL11A-11858 + GAGAAAUAAAGCGGCGGA 18 14022
    BCL11A-11859 + AGAGAAAUAAAGCGGCGGA 19 14023
    BCL11A-11860 + AAGAGAAAUAAAGCGGCGGA 20 14024
    BCL11A-11861 + AAAGAGAAAUAAAGCGGCGGA 21 14025
    BCL11A-11862 + AAAAGAGAAAUAAAGCGGCGGA 22 14026
    BCL11A-11863 + GAAAAGAGAAAUAAAGCGGCGGA 23 14027
    BCL11A-11864 + CGAAAAGAGAAAUAAAGCGGCGGA 24 14028
    BCL11A-11865 + UGGGGAAGCGCGGGCGGA 18 14029
    BCL11A-11866 + CUGGGGAAGCGCGGGCGGA 19 14030
    BCL11A-10048 + GCUGGGGAAGCGCGGGCGGA 20 14031
    BCL11A-11867 + GGCUGGGGAAGCGCGGGCGGA 21 14032
    BCL11A-11868 + GGGCUGGGGAAGCGCGGGCGGA 22 14033
    BCL11A-11869 + CGGGCUGGGGAAGCGCGGGCGGA 23 14034
    BCL11A-11870 + CCGGGCUGGGGAAGCGCGGGCGGA 24 14035
    BCL11A-11871 + CCAAGGCCGAGCCAGGGA 18 14036
    BCL11A-11872 + CCCAAGGCCGAGCCAGGGA 19 14037
    BCL11A-11873 + CCCCAAGGCCGAGCCAGGGA 20 14038
    BCL11A-11874 + CCCCCAAGGCCGAGCCAGGGA 21 14039
    BCL11A-11875 + GCCCCCAAGGCCGAGCCAGGGA 22 14040
    BCL11A-11876 + CGCCCCCAAGGCCGAGCCAGGGA 23 14041
    BCL11A-11877 + GCGCCCCCAAGGCCGAGCCAGGGA 24 14042
    BCL11A-11878 + CGGCCUGGAAAGAGGGGA 18 14043
    BCL11A-11879 + GCGGCCUGGAAAGAGGGGA 19 14044
    BCL11A-11880 + CGCGGCCUGGAAAGAGGGGA 20 14045
    BCL11A-11881 + GCGCGGCCUGGAAAGAGGGGA 21 14046
    BCL11A-11882 + CGCGCGGCCUGGAAAGAGGGGA 22 14047
    BCL11A-11883 + CCGCGCGGCCUGGAAAGAGGGGA 23 14048
    BCL11A-11884 + CCCGCGCGGCCUGGAAAGAGGGGA 24 14049
    BCL11A-11885 + UGGCGGGGCGGGGGGGGA 18 14050
    BCL11A-11886 + CUGGCGGGGCGGGGGGGGA 19 14051
    BCL11A-11887 + ACUGGCGGGGCGGGGGGGGA 20 14052
    BCL11A-11888 + AACUGGCGGGGCGGGGGGGGA 21 14053
    BCL11A-11889 + AAACUGGCGGGGCGGGGGGGGA 22 14054
    BCL11A-11890 + AAAACUGGCGGGGCGGGGGGGGA 23 14055
    BCL11A-11891 + CAAAACUGGCGGGGCGGGGGGGGA 24 14056
    BCL11A-11892 + GGGCGAGGGGAGGUGGGA 18 14057
    BCL11A-11893 + CGGGCGAGGGGAGGUGGGA 19 14058
    BCL11A-10052 + GCGGGCGAGGGGAGGUGGGA 20 14059
    BCL11A-11894 + AGCGGGCGAGGGGAGGUGGGA 21 14060
    BCL11A-11895 + CAGCGGGCGAGGGGAGGUGGGA 22 14061
    BCL11A-11896 + GCAGCGGGCGAGGGGAGGUGGGA 23 14062
    BCL11A-11897 + CGCAGCGGGCGAGGGGAGGUGGGA 24 14063
    BCL11A-11898 + GAGCCCGCGCGGCCUGGA 18 14064
    BCL11A-11899 + GGAGCCCGCGCGGCCUGGA 19 14065
    BCL11A-11900 + AGGAGCCCGCGCGGCCUGGA 20 14066
    BCL11A-11901 + CAGGAGCCCGCGCGGCCUGGA 21 14067
    BCL11A-11902 + CCAGGAGCCCGCGCGGCCUGGA 22 14068
    BCL11A-11903 + UCCAGGAGCCCGCGCGGCCUGGA 23 14069
    BCL11A-11904 + CUCCAGGAGCCCGCGCGGCCUGGA 24 14070
    BCL11A-11905 + CCCAUUUUCUUACGGUGA 18 14071
    BCL11A-11906 + CCCCAUUUUCUUACGGUGA 19 14072
    BCL11A-11907 + CCCCCAUUUUCUUACGGUGA 20 14073
    BCL11A-11908 + CCCCCCAUUUUCUUACGGUGA 21 14074
    BCL11A-11909 + CCCCCCCAUUUUCUUACGGUGA 22 14075
    BCL11A-11910 + ACCCCCCCAUUUUCUUACGGUGA 23 14076
    BCL11A-11911 + UACCCCCCCAUUUUCUUACGGUGA 24 14077
    BCL11A-11912 + GAGGGAGCGCACGGCAAC 18 14078
    BCL11A-11913 + GGAGGGAGCGCACGGCAAC 19 14079
    BCL11A-11914 + GGGAGGGAGCGCACGGCAAC 20 14080
    BCL11A-11915 + UGGGAGGGAGCGCACGGCAAC 21 14081
    BCL11A-11916 + GUGGGAGGGAGCGCACGGCAAC 22 14082
    BCL11A-11917 + GGUGGGAGGGAGCGCACGGCAAC 23 14083
    BCL11A-11918 + AGGUGGGAGGGAGCGCACGGCAAC 24 14084
    BCL11A-10612 + CUGCUCCCCCCCACACAC 18 14085
    BCL11A-10613 + CCUGCUCCCCCCCACACAC 19 14086
    BCL11A-10614 + CCCUGCUCCCCCCCACACAC 20 14087
    BCL11A-10615 + GCCCUGCUCCCCCCCACACAC 21 14088
    BCL11A-10616 + CGCCCUGCUCCCCCCCACACAC 22 14089
    BCL11A-10617 + GCGCCCUGCUCCCCCCCACACAC 23 14090
    BCL11A-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 14091
    BCL11A-11919 + AAUAGAGCGAGAGUGCAC 18 14092
    BCL11A-11920 + AAAUAGAGCGAGAGUGCAC 19 14093
    BCL11A-10059 + AAAAUAGAGCGAGAGUGCAC 20 14094
    BCL11A-11921 + AAAAAUAGAGCGAGAGUGCAC 21 14095
    BCL11A-11922 + AAAAAAUAGAGCGAGAGUGCAC 22 14096
    BCL11A-11923 + AAAAAAAUAGAGCGAGAGUGCAC 23 14097
    BCL11A-11924 + GAAAAAAAUAGAGCGAGAGUGCAC 24 14098
    BCL11A-11925 + ACAGCAAAGAAAAAUCAC 18 14099
    BCL11A-11926 + GACAGCAAAGAAAAAUCAC 19 14100
    BCL11A-11927 + GGACAGCAAAGAAAAAUCAC 20 14101
    BCL11A-11928 + AGGACAGCAAAGAAAAAUCAC 21 14102
    BCL11A-11929 + GAGGACAGCAAAGAAAAAUCAC 22 14103
    BCL11A-11930 + AGAGGACAGCAAAGAAAAAUCAC 23 14104
    BCL11A-11931 + GAGAGGACAGCAAAGAAAAAUCAC 24 14105
    BCL11A-11932 + CAAGGCCGAGCCAGGGAC 18 14106
    BCL11A-11933 + CCAAGGCCGAGCCAGGGAC 19 14107
    BCL11A-10063 + CCCAAGGCCGAGCCAGGGAC 20 14108
    BCL11A-11934 + CCCCAAGGCCGAGCCAGGGAC 21 14109
    BCL11A-11935 + CCCCCAAGGCCGAGCCAGGGAC 22 14110
    BCL11A-11936 + GCCCCCAAGGCCGAGCCAGGGAC 23 14111
    BCL11A-11937 + CGCCCCCAAGGCCGAGCCAGGGAC 24 14112
    BCL11A-11938 + GGCCUGGAAAGAGGGGAC 18 14113
    BCL11A-11939 + CGGCCUGGAAAGAGGGGAC 19 14114
    BCL11A-10064 + GCGGCCUGGAAAGAGGGGAC 20 14115
    BCL11A-11940 + CGCGGCCUGGAAAGAGGGGAC 21 14116
    BCL11A-11941 + GCGCGGCCUGGAAAGAGGGGAC 22 14117
    BCL11A-11942 + CGCGCGGCCUGGAAAGAGGGGAC 23 14118
    BCL11A-11943 + CCGCGCGGCCUGGAAAGAGGGGAC 24 14119
    BCL11A-11944 + AUAGAGCGAGAGUGCACC 18 14120
    BCL11A-11945 + AAUAGAGCGAGAGUGCACC 19 14121
    BCL11A-10067 + AAAUAGAGCGAGAGUGCACC 20 14122
    BCL11A-11946 + AAAAUAGAGCGAGAGUGCACC 21 14123
    BCL11A-11947 + AAAAAUAGAGCGAGAGUGCACC 22 14124
    BCL11A-11948 + AAAAAAUAGAGCGAGAGUGCACC 23 14125
    BCL11A-11949 + AAAAAAAUAGAGCGAGAGUGCACC 24 14126
    BCL11A-11950 + AAGGCCGAGCCAGGGACC 18 14127
    BCL11A-11951 + CAAGGCCGAGCCAGGGACC 19 14128
    BCL11A-10068 + CCAAGGCCGAGCCAGGGACC 20 14129
    BCL11A-11952 + CCCAAGGCCGAGCCAGGGACC 21 14130
    BCL11A-11953 + CCCCAAGGCCGAGCCAGGGACC 22 14131
    BCL11A-11954 + CCCCCAAGGCCGAGCCAGGGACC 23 14132
    BCL11A-11955 + GCCCCCAAGGCCGAGCCAGGGACC 24 14133
    BCL11A-11956 + GCCUGGAAAGAGGGGACC 18 14134
    BCL11A-11957 + GGCCUGGAAAGAGGGGACC 19 14135
    BCL11A-10069 + CGGCCUGGAAAGAGGGGACC 20 14136
    BCL11A-11958 + GCGGCCUGGAAAGAGGGGACC 21 14137
    BCL11A-11959 + CGCGGCCUGGAAAGAGGGGACC 22 14138
    BCL11A-11960 + GCGCGGCCUGGAAAGAGGGGACC 23 14139
    BCL11A-11961 + CGCGCGGCCUGGAAAGAGGGGACC 24 14140
    BCL11A-11962 + CCCGCUGCACACUUGACC 18 14141
    BCL11A-11963 + UCCCGCUGCACACUUGACC 19 14142
    BCL11A-11964 + CUCCCGCUGCACACUUGACC 20 14143
    BCL11A-11965 + CCUCCCGCUGCACACUUGACC 21 14144
    BCL11A-11966 + UCCUCCCGCUGCACACUUGACC 22 14145
    BCL11A-11967 + UUCCUCCCGCUGCACACUUGACC 23 14146
    BCL11A-11968 + UUUCCUCCCGCUGCACACUUGACC 24 14147
    BCL11A-11969 + CGGCGCAGGCCGGGGCCC 18 14148
    BCL11A-11970 + GCGGCGCAGGCCGGGGCCC 19 14149
    BCL11A-11971 + GGCGGCGCAGGCCGGGGCCC 20 14150
    BCL11A-11972 + AGGCGGCGCAGGCCGGGGCCC 21 14151
    BCL11A-11973 + CAGGCGGCGCAGGCCGGGGCCC 22 14152
    BCL11A-11974 + GCAGGCGGCGCAGGCCGGGGCCC 23 14153
    BCL11A-11975 + GGCAGGCGGCGCAGGCCGGGGCCC 24 14154
    BCL11A-11976 + GCUCGGGAAACUUUGCCC 18 14155
    BCL11A-11977 + CGCUCGGGAAACUUUGCCC 19 14156
    BCL11A-11978 + GCGCUCGGGAAACUUUGCCC 20 14157
    BCL11A-11979 + UGCGCUCGGGAAACUUUGCCC 21 14158
    BCL11A-11980 + CUGCGCUCGGGAAACUUUGCCC 22 14159
    BCL11A-11981 + GCUGCGCUCGGGAAACUUUGCCC 23 14160
    BCL11A-11982 + GGCUGCGCUCGGGAAACUUUGCCC 24 14161
    BCL11A-11983 + UCUCACCUCUUUUCUCCC 18 14162
    BCL11A-11984 + GUCUCACCUCUUUUCUCCC 19 14163
    BCL11A-10081 + AGUCUCACCUCUUUUCUCCC 20 14164
    BCL11A-11985 + CAGUCUCACCUCUUUUCUCCC 21 14165
    BCL11A-11986 + CCAGUCUCACCUCUUUUCUCCC 22 14166
    BCL11A-11987 + GCCAGUCUCACCUCUUUUCUCCC 23 14167
    BCL11A-11988 + AGCCAGUCUCACCUCUUUUCUCCC 24 14168
    BCL11A-11989 + GGGGCCGAAGUAAAAGCC 18 14169
    BCL11A-11990 + AGGGGCCGAAGUAAAAGCC 19 14170
    BCL11A-11991 + CAGGGGCCGAAGUAAAAGCC 20 14171
    BCL11A-11992 + CCAGGGGCCGAAGUAAAAGCC 21 14172
    BCL11A-11993 + GCCAGGGGCCGAAGUAAAAGCC 22 14173
    BCL11A-11994 + CGCCAGGGGCCGAAGUAAAAGCC 23 14174
    BCL11A-11995 + ACGCCAGGGGCCGAAGUAAAAGCC 24 14175
    BCL11A-11996 + CACCGGGAGGCUGCAGCC 18 14176
    BCL11A-11997 + GCACCGGGAGGCUGCAGCC 19 14177
    BCL11A-11998 + UGCACCGGGAGGCUGCAGCC 20 14178
    BCL11A-11999 + GUGCACCGGGAGGCUGCAGCC 21 14179
    BCL11A-12000 + AGUGCACCGGGAGGCUGCAGCC 22 14180
    BCL11A-12001 + GAGUGCACCGGGAGGCUGCAGCC 23 14181
    BCL11A-12002 + AGAGUGCACCGGGAGGCUGCAGCC 24 14182
    BCL11A-12003 + CGCCCCCAAGGCCGAGCC 18 14183
    BCL11A-12004 + GCGCCCCCAAGGCCGAGCC 19 14184
    BCL11A-10085 + GGCGCCCCCAAGGCCGAGCC 20 14185
    BCL11A-12005 + GGGCGCCCCCAAGGCCGAGCC 21 14186
    BCL11A-12006 + AGGGCGCCCCCAAGGCCGAGCC 22 14187
    BCL11A-12007 + GAGGGCGCCCCCAAGGCCGAGCC 23 14188
    BCL11A-12008 + CGAGGGCGCCCCCAAGGCCGAGCC 24 14189
    BCL11A-12009 + UCCCCGCGUGUGGACGCC 18 14190
    BCL11A-12010 + CUCCCCGCGUGUGGACGCC 19 14191
    BCL11A-10086 + GCUCCCCGCGUGUGGACGCC 20 14192
    BCL11A-12011 + CGCUCCCCGCGUGUGGACGCC 21 14193
    BCL11A-12012 + UCGCUCCCCGCGUGUGGACGCC 22 14194
    BCL11A-12013 + CUCGCUCCCCGCGUGUGGACGCC 23 14195
    BCL11A-12014 + GCUCGCUCCCCGCGUGUGGACGCC 24 14196
    BCL11A-12015 + CGCGGACUCAGGAGCGCC 18 14197
    BCL11A-12016 + CCGCGGACUCAGGAGCGCC 19 14198
    BCL11A-10087 + UCCGCGGACUCAGGAGCGCC 20 14199
    BCL11A-12017 + CUCCGCGGACUCAGGAGCGCC 21 14200
    BCL11A-12018 + ACUCCGCGGACUCAGGAGCGCC 22 14201
    BCL11A-12019 + GACUCCGCGGACUCAGGAGCGCC 23 14202
    BCL11A-12020 + CGACUCCGCGGACUCAGGAGCGCC 24 14203
    BCL11A-12021 + CCAGGAGCCCGCGCGGCC 18 14204
    BCL11A-12022 + UCCAGGAGCCCGCGCGGCC 19 14205
    BCL11A-10089 + CUCCAGGAGCCCGCGCGGCC 20 14206
    BCL11A-12023 + UCUCCAGGAGCCCGCGCGGCC 21 14207
    BCL11A-12024 + GUCUCCAGGAGCCCGCGCGGCC 22 14208
    BCL11A-12025 + AGUCUCCAGGAGCCCGCGCGGCC 23 14209
    BCL11A-12026 + AAGUCUCCAGGAGCCCGCGCGGCC 24 14210
    BCL11A-12027 + GGCCCCUCUCCCGACUCC 18 14211
    BCL11A-12028 + CGGCCCCUCUCCCGACUCC 19 14212
    BCL11A-12029 + GCGGCCCCUCUCCCGACUCC 20 14213
    BCL11A-12030 + CGCGGCCCCUCUCCCGACUCC 21 14214
    BCL11A-12031 + CCGCGGCCCCUCUCCCGACUCC 22 14215
    BCL11A-12032 + GCCGCGGCCCCUCUCCCGACUCC 23 14216
    BCL11A-12033 + CGCCGCGGCCCCUCUCCCGACUCC 24 14217
    BCL11A-12034 + GGCAGCGCCCAAGUCUCC 18 14218
    BCL11A-12035 + GGGCAGCGCCCAAGUCUCC 19 14219
    BCL11A-10093 + AGGGCAGCGCCCAAGUCUCC 20 14220
    BCL11A-12036 + AAGGGCAGCGCCCAAGUCUCC 21 14221
    BCL11A-12037 + GAAGGGCAGCGCCCAAGUCUCC 22 14222
    BCL11A-12038 + GGAAGGGCAGCGCCCAAGUCUCC 23 14223
    BCL11A-12039 + CGGAAGGGCAGCGCCCAAGUCUCC 24 14224
    BCL11A-12040 + GUCUCACCUCUUUUCUCC 18 14225
    BCL11A-12041 + AGUCUCACCUCUUUUCUCC 19 14226
    BCL11A-12042 + CAGUCUCACCUCUUUUCUCC 20 14227
    BCL11A-12043 + CCAGUCUCACCUCUUUUCUCC 21 14228
    BCL11A-12044 + GCCAGUCUCACCUCUUUUCUCC 22 14229
    BCL11A-12045 + AGCCAGUCUCACCUCUUUUCUCC 23 14230
    BCL11A-12046 + AAGCCAGUCUCACCUCUUUUCUCC 24 14231
    BCL11A-12047 + CGGCGCGGGAGGGCAAGC 18 14232
    BCL11A-12048 + GCGGCGCGGGAGGGCAAGC 19 14233
    BCL11A-12049 + GGCGGCGCGGGAGGGCAAGC 20 14234
    BCL11A-12050 + GCCCCGGGCUGGGGAAGC 18 14235
    BCL11A-12051 + AGCCCCGGGCUGGGGAAGC 19 14236
    BCL11A-12052 + CAGCCCCGGGCUGGGGAAGC 20 14237
    BCL11A-12053 + GCAGCCCCGGGCUGGGGAAGC 21 14238
    BCL11A-12054 + UGCAGCCCCGGGCUGGGGAAGC 22 14239
    BCL11A-12055 + CUGCAGCCCCGGGCUGGGGAAGC 23 14240
    BCL11A-12056 + GCUGCAGCCCCGGGCUGGGGAAGC 24 14241
    BCL11A-12057 + GCGCCCCCAAGGCCGAGC 18 14242
    BCL11A-12058 + GGCGCCCCCAAGGCCGAGC 19 14243
    BCL11A-12059 + GGGCGCCCCCAAGGCCGAGC 20 14244
    BCL11A-12060 + AGGGCGCCCCCAAGGCCGAGC 21 14245
    BCL11A-12061 + GAGGGCGCCCCCAAGGCCGAGC 22 14246
    BCL11A-12062 + CGAGGGCGCCCCCAAGGCCGAGC 23 14247
    BCL11A-12063 + CCGAGGGCGCCCCCAAGGCCGAGC 24 14248
    BCL11A-12064 + CUCCCCGCGUGUGGACGC 18 14249
    BCL11A-12065 + GCUCCCCGCGUGUGGACGC 19 14250
    BCL11A-12066 + CGCUCCCCGCGUGUGGACGC 20 14251
    BCL11A-12067 + UCGCUCCCCGCGUGUGGACGC 21 14252
    BCL11A-12068 + CUCGCUCCCCGCGUGUGGACGC 22 14253
    BCL11A-12069 + GCUCGCUCCCCGCGUGUGGACGC 23 14254
    BCL11A-12070 + CGCUCGCUCCCCGCGUGUGGACGC 24 14255
    BCL11A-12071 + GCGCGGGAGGGCAAGCGC 18 14256
    BCL11A-12072 + GGCGCGGGAGGGCAAGCGC 19 14257
    BCL11A-12073 + CGGCGCGGGAGGGCAAGCGC 20 14258
    BCL11A-12074 + CCGCGGACUCAGGAGCGC 18 14259
    BCL11A-12075 + UCCGCGGACUCAGGAGCGC 19 14260
    BCL11A-10106 + CUCCGCGGACUCAGGAGCGC 20 14261
    BCL11A-12076 + ACUCCGCGGACUCAGGAGCGC 21 14262
    BCL11A-12077 + GACUCCGCGGACUCAGGAGCGC 22 14263
    BCL11A-12078 + CGACUCCGCGGACUCAGGAGCGC 23 14264
    BCL11A-12079 + CCGACUCCGCGGACUCAGGAGCGC 24 14265
    BCL11A-12080 + CCGAGCCCGCGGCUGCGC 18 14266
    BCL11A-12081 + CCCGAGCCCGCGGCUGCGC 19 14267
    BCL11A-12082 + CCCCGAGCCCGCGGCUGCGC 20 14268
    BCL11A-12083 + GCCCCGAGCCCGCGGCUGCGC 21 14269
    BCL11A-12084 + AGCCCCGAGCCCGCGGCUGCGC 22 14270
    BCL11A-12085 + AAGCCCCGAGCCCGCGGCUGCGC 23 14271
    BCL11A-12086 + AAAGCCCCGAGCCCGCGGCUGCGC 24 14272
    BCL11A-12087 + GAGGCAGGCGGCGCAGGC 18 14273
    BCL11A-12088 + AGAGGCAGGCGGCGCAGGC 19 14274
    BCL11A-10110 + GAGAGGCAGGCGGCGCAGGC 20 14275
    BCL11A-12089 + GGAGAGGCAGGCGGCGCAGGC 21 14276
    BCL11A-12090 + GGGAGAGGCAGGCGGCGCAGGC 22 14277
    BCL11A-12091 + GGGGAGAGGCAGGCGGCGCAGGC 23 14278
    BCL11A-12092 + CGGGGAGAGGCAGGCGGCGCAGGC 24 14279
    BCL11A-12093 + UCCAGGAGCCCGCGCGGC 18 14280
    BCL11A-12094 + CUCCAGGAGCCCGCGCGGC 19 14281
    BCL11A-12095 + UCUCCAGGAGCCCGCGCGGC 20 14282
    BCL11A-12096 + GUCUCCAGGAGCCCGCGCGGC 21 14283
    BCL11A-12097 + AGUCUCCAGGAGCCCGCGCGGC 22 14284
    BCL11A-12098 + AAGUCUCCAGGAGCCCGCGCGGC 23 14285
    BCL11A-12099 + CAAGUCUCCAGGAGCCCGCGCGGC 24 14286
    BCL11A-12100 + GAGGCUGCAGCCCCGGGC 18 14287
    BCL11A-12101 + GGAGGCUGCAGCCCCGGGC 19 14288
    BCL11A-10115 + GGGAGGCUGCAGCCCCGGGC 20 14289
    BCL11A-12102 + CGGGAGGCUGCAGCCCCGGGC 21 14290
    BCL11A-12103 + CCGGGAGGCUGCAGCCCCGGGC 22 14291
    BCL11A-12104 + ACCGGGAGGCUGCAGCCCCGGGC 23 14292
    BCL11A-12105 + CACCGGGAGGCUGCAGCCCCGGGC 24 14293
    BCL11A-12106 + UACAGCUCCGCAGCGGGC 18 14294
    BCL11A-12107 + UUACAGCUCCGCAGCGGGC 19 14295
    BCL11A-12108 + GUUACAGCUCCGCAGCGGGC 20 14296
    BCL11A-12109 + AGUUACAGCUCCGCAGCGGGC 21 14297
    BCL11A-12110 + AAGUUACAGCUCCGCAGCGGGC 22 14298
    BCL11A-12111 + CAAGUUACAGCUCCGCAGCGGGC 23 14299
    BCL11A-12112 + CCAAGUUACAGCUCCGCAGCGGGC 24 14300
    BCL11A-12113 + GGCGGCGCAGGCCGGGGC 18 14301
    BCL11A-12114 + AGGCGGCGCAGGCCGGGGC 19 14302
    BCL11A-12115 + CAGGCGGCGCAGGCCGGGGC 20 14303
    BCL11A-12116 + GCAGGCGGCGCAGGCCGGGGC 21 14304
    BCL11A-12117 + GGCAGGCGGCGCAGGCCGGGGC 22 14305
    BCL11A-12118 + AGGCAGGCGGCGCAGGCCGGGGC 23 14306
    BCL11A-12119 + GAGGCAGGCGGCGCAGGCCGGGGC 24 14307
    BCL11A-12120 + UUGCAAAACUGGCGGGGC 18 14308
    BCL11A-12121 + UUUGCAAAACUGGCGGGGC 19 14309
    BCL11A-10116 + UUUUGCAAAACUGGCGGGGC 20 14310
    BCL11A-12122 + AUUUUGCAAAACUGGCGGGGC 21 14311
    BCL11A-12123 + UAUUUUGCAAAACUGGCGGGGC 22 14312
    BCL11A-12124 + UUAUUUUGCAAAACUGGCGGGGC 23 14313
    BCL11A-12125 + AUUAUUUUGCAAAACUGGCGGGGC 24 14314
    BCL11A-12126 + CAAACACCCACCUCUGGC 18 14315
    BCL11A-12127 + ACAAACACCCACCUCUGGC 19 14316
    BCL11A-10118 + GACAAACACCCACCUCUGGC 20 14317
    BCL11A-12128 + GGACAAACACCCACCUCUGGC 21 14318
    BCL11A-12129 + GGGACAAACACCCACCUCUGGC 22 14319
    BCL11A-12130 + CGGGACAAACACCCACCUCUGGC 23 14320
    BCL11A-12131 + GCGGGACAAACACCCACCUCUGGC 24 14321
    BCL11A-12132 + GCGCUCGGGAAACUUUGC 18 14322
    BCL11A-12133 + UGCGCUCGGGAAACUUUGC 19 14323
    BCL11A-12134 + CUGCGCUCGGGAAACUUUGC 20 14324
    BCL11A-12135 + GCUGCGCUCGGGAAACUUUGC 21 14325
    BCL11A-12136 + GGCUGCGCUCGGGAAACUUUGC 22 14326
    BCL11A-12137 + CGGCUGCGCUCGGGAAACUUUGC 23 14327
    BCL11A-12138 + GCGGCUGCGCUCGGGAAACUUUGC 24 14328
    BCL11A-12139 + UCCCGACUCCGCGGACUC 18 14329
    BCL11A-12140 + CUCCCGACUCCGCGGACUC 19 14330
    BCL11A-10122 + UCUCCCGACUCCGCGGACUC 20 14331
    BCL11A-12141 + CUCUCCCGACUCCGCGGACUC 21 14332
    BCL11A-12142 + CCUCUCCCGACUCCGCGGACUC 22 14333
    BCL11A-12143 + CCCUCUCCCGACUCCGCGGACUC 23 14334
    BCL11A-12144 + CCCCUCUCCCGACUCCGCGGACUC 24 14335
    BCL11A-12145 + GAGCCCGCGGCUGCGCUC 18 14336
    BCL11A-12146 + CGAGCCCGCGGCUGCGCUC 19 14337
    BCL11A-10126 + CCGAGCCCGCGGCUGCGCUC 20 14338
    BCL11A-12147 + CCCGAGCCCGCGGCUGCGCUC 21 14339
    BCL11A-12148 + CCCCGAGCCCGCGGCUGCGCUC 22 14340
    BCL11A-12149 + GCCCCGAGCCCGCGGCUGCGCUC 23 14341
    BCL11A-12150 + AGCCCCGAGCCCGCGGCUGCGCUC 24 14342
    BCL11A-12151 + AGCCAGGUAGAGUUGCUC 18 14343
    BCL11A-12152 + AAGCCAGGUAGAGUUGCUC 19 14344
    BCL11A-12153 + GAAGCCAGGUAGAGUUGCUC 20 14345
    BCL11A-12154 + GGAAGCCAGGUAGAGUUGCUC 21 14346
    BCL11A-12155 + GGGAAGCCAGGUAGAGUUGCUC 22 14347
    BCL11A-12156 + AGGGAAGCCAGGUAGAGUUGCUC 23 14348
    BCL11A-12157 + GAGGGAAGCCAGGUAGAGUUGCUC 24 14349
    BCL11A-12158 + GGGCAGCGCCCAAGUCUC 18 14350
    BCL11A-12159 + AGGGCAGCGCCCAAGUCUC 19 14351
    BCL11A-12160 + AAGGGCAGCGCCCAAGUCUC 20 14352
    BCL11A-12161 + GAAGGGCAGCGCCCAAGUCUC 21 14353
    BCL11A-12162 + GGAAGGGCAGCGCCCAAGUCUC 22 14354
    BCL11A-12163 + CGGAAGGGCAGCGCCCAAGUCUC 23 14355
    BCL11A-12164 + CCGGAAGGGCAGCGCCCAAGUCUC 24 14356
    BCL11A-12165 + UUUGGAGGGCUGCGGGUC 18 14357
    BCL11A-12166 + GUUUGGAGGGCUGCGGGUC 19 14358
    BCL11A-10129 + AGUUUGGAGGGCUGCGGGUC 20 14359
    BCL11A-12167 + AAGUUUGGAGGGCUGCGGGUC 21 14360
    BCL11A-12168 + UAAGUUUGGAGGGCUGCGGGUC 22 14361
    BCL11A-12169 + CUAAGUUUGGAGGGCUGCGGGUC 23 14362
    BCL11A-12170 + CCUAAGUUUGGAGGGCUGCGGGUC 24 14363
    BCL11A-12171 + CGGCGGAAAGGAGGAAAG 18 14364
    BCL11A-12172 + GCGGCGGAAAGGAGGAAAG 19 14365
    BCL11A-10136 + AGCGGCGGAAAGGAGGAAAG 20 14366
    BCL11A-12173 + AAGCGGCGGAAAGGAGGAAAG 21 14367
    BCL11A-12174 + AAAGCGGCGGAAAGGAGGAAAG 22 14368
    BCL11A-12175 + UAAAGCGGCGGAAAGGAGGAAAG 23 14369
    BCL11A-12176 + AUAAAGCGGCGGAAAGGAGGAAAG 24 14370
    BCL11A-12177 + AAAUAAAGCGGCGGAAAG 18 14371
    BCL11A-12178 + GAAAUAAAGCGGCGGAAAG 19 14372
    BCL11A-12179 + AGAAAUAAAGCGGCGGAAAG 20 14373
    BCL11A-12180 + GAGAAAUAAAGCGGCGGAAAG 21 14374
    BCL11A-12181 + AGAGAAAUAAAGCGGCGGAAAG 22 14375
    BCL11A-12182 + AAGAGAAAUAAAGCGGCGGAAAG 23 14376
    BCL11A-12183 + AAAGAGAAAUAAAGCGGCGGAAAG 24 14377
    BCL11A-12184 + CCCGCGCGGCCUGGAAAG 18 14378
    BCL11A-12185 + GCCCGCGCGGCCUGGAAAG 19 14379
    BCL11A-10137 + AGCCCGCGCGGCCUGGAAAG 20 14380
    BCL11A-12186 + GAGCCCGCGCGGCCUGGAAAG 21 14381
    BCL11A-12187 + GGAGCCCGCGCGGCCUGGAAAG 22 14382
    BCL11A-12188 + AGGAGCCCGCGCGGCCUGGAAAG 23 14383
    BCL11A-12189 + CAGGAGCCCGCGCGGCCUGGAAAG 24 14384
    BCL11A-12190 + AAGAAAAAUCACCCGAAG 18 14385
    BCL11A-12191 + AAAGAAAAAUCACCCGAAG 19 14386
    BCL11A-12192 + CAAAGAAAAAUCACCCGAAG 20 14387
    BCL11A-12193 + GCAAAGAAAAAUCACCCGAAG 21 14388
    BCL11A-12194 + AGCAAAGAAAAAUCACCCGAAG 22 14389
    BCL11A-12195 + CAGCAAAGAAAAAUCACCCGAAG 23 14390
    BCL11A-12196 + ACAGCAAAGAAAAAUCACCCGAAG 24 14391
    BCL11A-12197 + AGCCGGCACAAAAGGCAG 18 14392
    BCL11A-12198 + GAGCCGGCACAAAAGGCAG 19 14393
    BCL11A-10144 + GGAGCCGGCACAAAAGGCAG 20 14394
    BCL11A-12199 + AGGAGCCGGCACAAAAGGCAG 21 14395
    BCL11A-12200 + GAGGAGCCGGCACAAAAGGCAG 22 14396
    BCL11A-12201 + CGAGGAGCCGGCACAAAAGGCAG 23 14397
    BCL11A-12202 + GCGAGGAGCCGGCACAAAAGGCAG 24 14398
    BCL11A-12203 + GCGGAAAGGAGGAAAGAG 18 14399
    BCL11A-12204 + GGCGGAAAGGAGGAAAGAG 19 14400
    BCL11A-12205 + CGGCGGAAAGGAGGAAAGAG 20 14401
    BCL11A-12206 + GCGGCGGAAAGGAGGAAAGAG 21 14402
    BCL11A-12207 + AGCGGCGGAAAGGAGGAAAGAG 22 14403
    BCL11A-12208 + AAGCGGCGGAAAGGAGGAAAGAG 23 14404
    BCL11A-12209 + AAAGCGGCGGAAAGGAGGAAAGAG 24 14405
    BCL11A-12210 + AUCACCCGAAGUUGAGAG 18 14406
    BCL11A-12211 + AAUCACCCGAAGUUGAGAG 19 14407
    BCL11A-12212 + AAAUCACCCGAAGUUGAGAG 20 14408
    BCL11A-12213 + AAAAUCACCCGAAGUUGAGAG 21 14409
    BCL11A-12214 + AAAAAUCACCCGAAGUUGAGAG 22 14410
    BCL11A-12215 + GAAAAAUCACCCGAAGUUGAGAG 23 14411
    BCL11A-12216 + AGAAAAAUCACCCGAAGUUGAGAG 24 14412
    BCL11A-12217 + CGGGAAACUUUGCCCGAG 18 14413
    BCL11A-12218 + UCGGGAAACUUUGCCCGAG 19 14414
    BCL11A-12219 + CUCGGGAAACUUUGCCCGAG 20 14415
    BCL11A-12220 + GCUCGGGAAACUUUGCCCGAG 21 14416
    BCL11A-12221 + CGCUCGGGAAACUUUGCCCGAG 22 14417
    BCL11A-12222 + GCGCUCGGGAAACUUUGCCCGAG 23 14418
    BCL11A-12223 + UGCGCUCGGGAAACUUUGCCCGAG 24 14419
    BCL11A-12224 + AGCUCCGCAGCGGGCGAG 18 14420
    BCL11A-12225 + CAGCUCCGCAGCGGGCGAG 19 14421
    BCL11A-10148 + ACAGCUCCGCAGCGGGCGAG 20 14422
    BCL11A-12226 + UACAGCUCCGCAGCGGGCGAG 21 14423
    BCL11A-12227 + UUACAGCUCCGCAGCGGGCGAG 22 14424
    BCL11A-12228 + GUUACAGCUCCGCAGCGGGCGAG 23 14425
    BCL11A-12229 + AGUUACAGCUCCGCAGCGGGCGAG 24 14426
    BCL11A-12230 + CGCAGCGGGCGAGGGGAG 18 14427
    BCL11A-12231 + CCGCAGCGGGCGAGGGGAG 19 14428
    BCL11A-12232 + UCCGCAGCGGGCGAGGGGAG 20 14429
    BCL11A-12233 + CUCCGCAGCGGGCGAGGGGAG 21 14430
    BCL11A-12234 + GCUCCGCAGCGGGCGAGGGGAG 22 14431
    BCL11A-12235 + AGCUCCGCAGCGGGCGAGGGGAG 23 14432
    BCL11A-12236 + CAGCUCCGCAGCGGGCGAGGGGAG 24 14433
    BCL11A-12237 + CCAUUUUCUUACGGUGAG 18 14434
    BCL11A-12238 + CCCAUUUUCUUACGGUGAG 19 14435
    BCL11A-10154 + CCCCAUUUUCUUACGGUGAG 20 14436
    BCL11A-12239 + CCCCCAUUUUCUUACGGUGAG 21 14437
    BCL11A-12240 + CCCCCCAUUUUCUUACGGUGAG 22 14438
    BCL11A-12241 + CCCCCCCAUUUUCUUACGGUGAG 23 14439
    BCL11A-12242 + ACCCCCCCAUUUUCUUACGGUGAG 24 14440
    BCL11A-12243 + CCUGGAAAGAGGGGACCG 18 14441
    BCL11A-12244 + GCCUGGAAAGAGGGGACCG 19 14442
    BCL11A-10159 + GGCCUGGAAAGAGGGGACCG 20 14443
    BCL11A-12245 + CGGCCUGGAAAGAGGGGACCG 21 14444
    BCL11A-12246 + GCGGCCUGGAAAGAGGGGACCG 22 14445
    BCL11A-12247 + CGCGGCCUGGAAAGAGGGGACCG 23 14446
    BCL11A-12248 + GCGCGGCCUGGAAAGAGGGGACCG 24 14447
    BCL11A-12249 + CUCGGGAAACUUUGCCCG 18 14448
    BCL11A-12250 + GCUCGGGAAACUUUGCCCG 19 14449
    BCL11A-10163 + CGCUCGGGAAACUUUGCCCG 20 14450
    BCL11A-12251 + GCGCUCGGGAAACUUUGCCCG 21 14451
    BCL11A-12252 + UGCGCUCGGGAAACUUUGCCCG 22 14452
    BCL11A-12253 + CUGCGCUCGGGAAACUUUGCCCG 23 14453
    BCL11A-12254 + GCUGCGCUCGGGAAACUUUGCCCG 24 14454
    BCL11A-12255 + GAAAAGAGAAAUAAAGCG 18 14455
    BCL11A-12256 + CGAAAAGAGAAAUAAAGCG 19 14456
    BCL11A-12257 + UCGAAAAGAGAAAUAAAGCG 20 14457
    BCL11A-12258 + UUCGAAAAGAGAAAUAAAGCG 21 14458
    BCL11A-12259 + UUUCGAAAAGAGAAAUAAAGCG 22 14459
    BCL11A-12260 + UUUUCGAAAAGAGAAAUAAAGCG 23 14460
    BCL11A-12261 + CUUUUCGAAAAGAGAAAUAAAGCG 24 14461
    BCL11A-12262 + UCCGCGGACUCAGGAGCG 18 14462
    BCL11A-12263 + CUCCGCGGACUCAGGAGCG 19 14463
    BCL11A-12264 + ACUCCGCGGACUCAGGAGCG 20 14464
    BCL11A-12265 + GACUCCGCGGACUCAGGAGCG 21 14465
    BCL11A-12266 + CGACUCCGCGGACUCAGGAGCG 22 14466
    BCL11A-12267 + CCGACUCCGCGGACUCAGGAGCG 23 14467
    BCL11A-12268 + CCCGACUCCGCGGACUCAGGAGCG 24 14468
    BCL11A-12269 + CGCGGGAGGGCAAGCGCG 18 14469
    BCL11A-12270 + GCGCGGGAGGGCAAGCGCG 19 14470
    BCL11A-10178 + GGCGCGGGAGGGCAAGCGCG 20 14471
    BCL11A-12271 + ACAGCUCCGCAGCGGGCG 18 14472
    BCL11A-12272 + UACAGCUCCGCAGCGGGCG 19 14473
    BCL11A-10180 + UUACAGCUCCGCAGCGGGCG 20 14474
    BCL11A-12273 + GUUACAGCUCCGCAGCGGGCG 21 14475
    BCL11A-12274 + AGUUACAGCUCCGCAGCGGGCG 22 14476
    BCL11A-12275 + AAGUUACAGCUCCGCAGCGGGCG 23 14477
    BCL11A-12276 + CAAGUUACAGCUCCGCAGCGGGCG 24 14478
    BCL11A-12277 + GCUGGGGAAGCGCGGGCG 18 14479
    BCL11A-12278 + GGCUGGGGAAGCGCGGGCG 19 14480
    BCL11A-12279 + GGGCUGGGGAAGCGCGGGCG 20 14481
    BCL11A-12280 + CGGGCUGGGGAAGCGCGGGCG 21 14482
    BCL11A-12281 + CCGGGCUGGGGAAGCGCGGGCG 22 14483
    BCL11A-12282 + CCCGGGCUGGGGAAGCGCGGGCG 23 14484
    BCL11A-12283 + CCCCGGGCUGGGGAAGCGCGGGCG 24 14485
    BCL11A-12284 + UGCAAAACUGGCGGGGCG 18 14486
    BCL11A-12285 + UUGCAAAACUGGCGGGGCG 19 14487
    BCL11A-10181 + UUUGCAAAACUGGCGGGGCG 20 14488
    BCL11A-12286 + UUUUGCAAAACUGGCGGGGCG 21 14489
    BCL11A-12287 + AUUUUGCAAAACUGGCGGGGCG 22 14490
    BCL11A-12288 + UAUUUUGCAAAACUGGCGGGGCG 23 14491
    BCL11A-12289 + UUAUUUUGCAAAACUGGCGGGGCG 24 14492
    BCL11A-12290 + AAUAAAGCGGCGGAAAGG 18 14493
    BCL11A-12291 + AAAUAAAGCGGCGGAAAGG 19 14494
    BCL11A-10185 + GAAAUAAAGCGGCGGAAAGG 20 14495
    BCL11A-12292 + AGAAAUAAAGCGGCGGAAAGG 21 14496
    BCL11A-12293 + GAGAAAUAAAGCGGCGGAAAGG 22 14497
    BCL11A-12294 + AGAGAAAUAAAGCGGCGGAAAGG 23 14498
    BCL11A-12295 + AAGAGAAAUAAAGCGGCGGAAAGG 24 14499
    BCL11A-12296 + CCGAGGGCGCCCCCAAGG 18 14500
    BCL11A-12297 + CCCGAGGGCGCCCCCAAGG 19 14501
    BCL11A-12298 + GCCCGAGGGCGCCCCCAAGG 20 14502
    BCL11A-12299 + GGCCCGAGGGCGCCCCCAAGG 21 14503
    BCL11A-12300 + GGGCCCGAGGGCGCCCCCAAGG 22 14504
    BCL11A-12301 + GGGGCCCGAGGGCGCCCCCAAGG 23 14505
    BCL11A-12302 + CGGGGCCCGAGGGCGCCCCCAAGG 24 14506
    BCL11A-12303 + AGAGGCAGGCGGCGCAGG 18 14507
    BCL11A-12304 + GAGAGGCAGGCGGCGCAGG 19 14508
    BCL11A-12305 + GGAGAGGCAGGCGGCGCAGG 20 14509
    BCL11A-12306 + GGGAGAGGCAGGCGGCGCAGG 21 14510
    BCL11A-12307 + GGGGAGAGGCAGGCGGCGCAGG 22 14511
    BCL11A-12308 + CGGGGAGAGGCAGGCGGCGCAGG 23 14512
    BCL11A-12309 + CCGGGGAGAGGCAGGCGGCGCAGG 24 14513
    BCL11A-12310 + GCAGCGGGCGAGGGGAGG 18 14514
    BCL11A-12311 + CGCAGCGGGCGAGGGGAGG 19 14515
    BCL11A-10190 + CCGCAGCGGGCGAGGGGAGG 20 14516
    BCL11A-12312 + UCCGCAGCGGGCGAGGGGAGG 21 14517
    BCL11A-12313 + CUCCGCAGCGGGCGAGGGGAGG 22 14518
    BCL11A-12314 + GCUCCGCAGCGGGCGAGGGGAGG 23 14519
    BCL11A-12315 + AGCUCCGCAGCGGGCGAGGGGAGG 24 14520
    BCL11A-12316 + GGAGGGCUGCGGGUCCGG 18 14521
    BCL11A-12317 + UGGAGGGCUGCGGGUCCGG 19 14522
    BCL11A-12318 + UUGGAGGGCUGCGGGUCCGG 20 14523
    BCL11A-12319 + UUUGGAGGGCUGCGGGUCCGG 21 14524
    BCL11A-12320 + GUUUGGAGGGCUGCGGGUCCGG 22 14525
    BCL11A-12321 + AGUUUGGAGGGCUGCGGGUCCGG 23 14526
    BCL11A-12322 + AAGUUUGGAGGGCUGCGGGUCCGG 24 14527
    BCL11A-12323 + AAAAGAGAAAUAAAGCGG 18 14528
    BCL11A-12324 + GAAAAGAGAAAUAAAGCGG 19 14529
    BCL11A-10193 + CGAAAAGAGAAAUAAAGCGG 20 14530
    BCL11A-12325 + UCGAAAAGAGAAAUAAAGCGG 21 14531
    BCL11A-12326 + UUCGAAAAGAGAAAUAAAGCGG 22 14532
    BCL11A-12327 + UUUCGAAAAGAGAAAUAAAGCGG 23 14533
    BCL11A-12328 + UUUUCGAAAAGAGAAAUAAAGCGG 24 14534
    BCL11A-12329 + GUUACAGCUCCGCAGCGG 18 14535
    BCL11A-12330 + AGUUACAGCUCCGCAGCGG 19 14536
    BCL11A-12331 + AAGUUACAGCUCCGCAGCGG 20 14537
    BCL11A-12332 + CAAGUUACAGCUCCGCAGCGG 21 14538
    BCL11A-12333 + CCAAGUUACAGCUCCGCAGCGG 22 14539
    BCL11A-12334 + UCCAAGUUACAGCUCCGCAGCGG 23 14540
    BCL11A-12335 + CUCCAAGUUACAGCUCCGCAGCGG 24 14541
    BCL11A-12336 + CGGGCUGGGGAAGCGCGG 18 14542
    BCL11A-12337 + CCGGGCUGGGGAAGCGCGG 19 14543
    BCL11A-12338 + CCCGGGCUGGGGAAGCGCGG 20 14544
    BCL11A-12339 + CCCCGGGCUGGGGAAGCGCGG 21 14545
    BCL11A-12340 + GCCCCGGGCUGGGGAAGCGCGG 22 14546
    BCL11A-12341 + AGCCCCGGGCUGGGGAAGCGCGG 23 14547
    BCL11A-12342 + CAGCCCCGGGCUGGGGAAGCGCGG 24 14548
    BCL11A-12343 + CUGGGGAAGCGCGGGCGG 18 14549
    BCL11A-12344 + GCUGGGGAAGCGCGGGCGG 19 14550
    BCL11A-10197 + GGCUGGGGAAGCGCGGGCGG 20 14551
    BCL11A-12345 + GGGCUGGGGAAGCGCGGGCGG 21 14552
    BCL11A-12346 + CGGGCUGGGGAAGCGCGGGCGG 22 14553
    BCL11A-12347 + CCGGGCUGGGGAAGCGCGGGCGG 23 14554
    BCL11A-12348 + CCCGGGCUGGGGAAGCGCGGGCGG 24 14555
    BCL11A-12349 + GCAAAACUGGCGGGGCGG 18 14556
    BCL11A-12350 + UGCAAAACUGGCGGGGCGG 19 14557
    BCL11A-10198 + UUGCAAAACUGGCGGGGCGG 20 14558
    BCL11A-12351 + UUUGCAAAACUGGCGGGGCGG 21 14559
    BCL11A-12352 + UUUUGCAAAACUGGCGGGGCGG 22 14560
    BCL11A-12353 + AUUUUGCAAAACUGGCGGGGCGG 23 14561
    BCL11A-12354 + UAUUUUGCAAAACUGGCGGGGCGG 24 14562
    BCL11A-12355 + UGGAAAGAGGGGACCGGG 18 14563
    BCL11A-12356 + CUGGAAAGAGGGGACCGGG 19 14564
    BCL11A-12357 + CCUGGAAAGAGGGGACCGGG 20 14565
    BCL11A-12358 + GCCUGGAAAGAGGGGACCGGG 21 14566
    BCL11A-12359 + GGCCUGGAAAGAGGGGACCGGG 22 14567
    BCL11A-12360 + CGGCCUGGAAAGAGGGGACCGGG 23 14568
    BCL11A-12361 + GCGGCCUGGAAAGAGGGGACCGGG 24 14569
    BCL11A-12362 + GGAGGCUGCAGCCCCGGG 18 14570
    BCL11A-12363 + GGGAGGCUGCAGCCCCGGG 19 14571
    BCL11A-12364 + CGGGAGGCUGCAGCCCCGGG 20 14572
    BCL11A-12365 + CCGGGAGGCUGCAGCCCCGGG 21 14573
    BCL11A-12366 + ACCGGGAGGCUGCAGCCCCGGG 22 14574
    BCL11A-12367 + CACCGGGAGGCUGCAGCCCCGGG 23 14575
    BCL11A-12368 + GCACCGGGAGGCUGCAGCCCCGGG 24 14576
    BCL11A-12369 + GGGCUGGGGAAGCGCGGG 18 14577
    BCL11A-12370 + CGGGCUGGGGAAGCGCGGG 19 14578
    BCL11A-10203 + CCGGGCUGGGGAAGCGCGGG 20 14579
    BCL11A-12371 + CCCGGGCUGGGGAAGCGCGGG 21 14580
    BCL11A-12372 + CCCCGGGCUGGGGAAGCGCGGG 22 14581
    BCL11A-12373 + GCCCCGGGCUGGGGAAGCGCGGG 23 14582
    BCL11A-12374 + AGCCCCGGGCUGGGGAAGCGCGGG 24 14583
    BCL11A-12375 + CAAAACUGGCGGGGCGGG 18 14584
    BCL11A-12376 + GCAAAACUGGCGGGGCGGG 19 14585
    BCL11A-10204 + UGCAAAACUGGCGGGGCGGG 20 14586
    BCL11A-12377 + UUGCAAAACUGGCGGGGCGGG 21 14587
    BCL11A-12378 + UUUGCAAAACUGGCGGGGCGGG 22 14588
    BCL11A-12379 + UUUUGCAAAACUGGCGGGGCGGG 23 14589
    BCL11A-12380 + AUUUUGCAAAACUGGCGGGGCGGG 24 14590
    BCL11A-12381 + UUUUGCAAAACUGGCGGG 18 14591
    BCL11A-12382 + AUUUUGCAAAACUGGCGGG 19 14592
    BCL11A-12383 + UAUUUUGCAAAACUGGCGGG 20 14593
    BCL11A-12384 + UUAUUUUGCAAAACUGGCGGG 21 14594
    BCL11A-12385 + AUUAUUUUGCAAAACUGGCGGG 22 14595
    BCL11A-12386 + CAUUAUUUUGCAAAACUGGCGGG 23 14596
    BCL11A-12387 + UCAUUAUUUUGCAAAACUGGCGGG 24 14597
    BCL11A-12388 + GCGUGUGGACGCCAGGGG 18 14598
    BCL11A-12389 + CGCGUGUGGACGCCAGGGG 19 14599
    BCL11A-12390 + CCGCGUGUGGACGCCAGGGG 20 14600
    BCL11A-12391 + CCCGCGUGUGGACGCCAGGGG 21 14601
    BCL11A-12392 + CCCCGCGUGUGGACGCCAGGGG 22 14602
    BCL11A-12393 + UCCCCGCGUGUGGACGCCAGGGG 23 14603
    BCL11A-12394 + CUCCCCGCGUGUGGACGCCAGGGG 24 14604
    BCL11A-12395 + AAAACUGGCGGGGCGGGG 18 14605
    BCL11A-12396 + CAAAACUGGCGGGGCGGGG 19 14606
    BCL11A-10207 + GCAAAACUGGCGGGGCGGGG 20 14607
    BCL11A-12397 + UGCAAAACUGGCGGGGCGGGG 21 14608
    BCL11A-12398 + UUGCAAAACUGGCGGGGCGGGG 22 14609
    BCL11A-12399 + UUUGCAAAACUGGCGGGGCGGGG 23 14610
    BCL11A-12400 + UUUUGCAAAACUGGCGGGGCGGGG 24 14611
    BCL11A-12401 + UUUGCAAAACUGGCGGGG 18 14612
    BCL11A-12402 + UUUUGCAAAACUGGCGGGG 19 14613
    BCL11A-10208 + AUUUUGCAAAACUGGCGGGG 20 14614
    BCL11A-12403 + UAUUUUGCAAAACUGGCGGGG 21 14615
    BCL11A-12404 + UUAUUUUGCAAAACUGGCGGGG 22 14616
    BCL11A-12405 + AUUAUUUUGCAAAACUGGCGGGG 23 14617
    BCL11A-12406 + CAUUAUUUUGCAAAACUGGCGGGG 24 14618
    BCL11A-12407 + CGGGCGAGGGGAGGUGGG 18 14619
    BCL11A-12408 + GCGGGCGAGGGGAGGUGGG 19 14620
    BCL11A-10213 + AGCGGGCGAGGGGAGGUGGG 20 14621
    BCL11A-12409 + CAGCGGGCGAGGGGAGGUGGG 21 14622
    BCL11A-12410 + GCAGCGGGCGAGGGGAGGUGGG 22 14623
    BCL11A-12411 + CGCAGCGGGCGAGGGGAGGUGGG 23 14624
    BCL11A-12412 + CCGCAGCGGGCGAGGGGAGGUGGG 24 14625
    BCL11A-12413 + AUUAUUUUGCAAAACUGG 18 14626
    BCL11A-12414 + CAUUAUUUUGCAAAACUGG 19 14627
    BCL11A-10215 + UCAUUAUUUUGCAAAACUGG 20 14628
    BCL11A-12415 + UUCAUUAUUUUGCAAAACUGG 21 14629
    BCL11A-12416 + GUUCAUUAUUUUGCAAAACUGG 22 14630
    BCL11A-12417 + UGUUCAUUAUUUUGCAAAACUGG 23 14631
    BCL11A-12418 + UUGUUCAUUAUUUUGCAAAACUGG 24 14632
    BCL11A-12419 + ACAAACACCCACCUCUGG 18 14633
    BCL11A-12420 + GACAAACACCCACCUCUGG 19 14634
    BCL11A-12421 + GGACAAACACCCACCUCUGG 20 14635
    BCL11A-12422 + GGGACAAACACCCACCUCUGG 21 14636
    BCL11A-12423 + CGGGACAAACACCCACCUCUGG 22 14637
    BCL11A-12424 + GCGGGACAAACACCCACCUCUGG 23 14638
    BCL11A-12425 + AGCGGGACAAACACCCACCUCUGG 24 14639
    BCL11A-12426 + GCGGGCGAGGGGAGGUGG 18 14640
    BCL11A-12427 + AGCGGGCGAGGGGAGGUGG 19 14641
    BCL11A-12428 + CAGCGGGCGAGGGGAGGUGG 20 14642
    BCL11A-12429 + GCAGCGGGCGAGGGGAGGUGG 21 14643
    BCL11A-12430 + CGCAGCGGGCGAGGGGAGGUGG 22 14644
    BCL11A-12431 + CCGCAGCGGGCGAGGGGAGGUGG 23 14645
    BCL11A-12432 + UCCGCAGCGGGCGAGGGGAGGUGG 24 14646
    BCL11A-12433 + CAUUAUUUUGCAAAACUG 18 14647
    BCL11A-12434 + UCAUUAUUUUGCAAAACUG 19 14648
    BCL11A-12435 + UUCAUUAUUUUGCAAAACUG 20 14649
    BCL11A-12436 + GUUCAUUAUUUUGCAAAACUG 21 14650
    BCL11A-12437 + UGUUCAUUAUUUUGCAAAACUG 22 14651
    BCL11A-12438 + UUGUUCAUUAUUUUGCAAAACUG 23 14652
    BCL11A-12439 + AUUGUUCAUUAUUUUGCAAAACUG 24 14653
    BCL11A-12440 + GGCUGCAGCCCCGGGCUG 18 14654
    BCL11A-12441 + AGGCUGCAGCCCCGGGCUG 19 14655
    BCL11A-10226 + GAGGCUGCAGCCCCGGGCUG 20 14656
    BCL11A-12442 + GGAGGCUGCAGCCCCGGGCUG 21 14657
    BCL11A-12443 + GGGAGGCUGCAGCCCCGGGCUG 22 14658
    BCL11A-12444 + CGGGAGGCUGCAGCCCCGGGCUG 23 14659
    BCL11A-12445 + CCGGGAGGCUGCAGCCCCGGGCUG 24 14660
    BCL11A-12446 + GCCACUUUCUCACUAUUG 18 14661
    BCL11A-12447 + UGCCACUUUCUCACUAUUG 19 14662
    BCL11A-10230 + GUGCCACUUUCUCACUAUUG 20 14663
    BCL11A-12448 + AGUGCCACUUUCUCACUAUUG 21 14664
    BCL11A-12449 + CAGUGCCACUUUCUCACUAUUG 22 14665
    BCL11A-12450 + ACAGUGCCACUUUCUCACUAUUG 23 14666
    BCL11A-12451 + CACAGUGCCACUUUCUCACUAUUG 24 14667
    BCL11A-12452 + GAAUCCAGCCUAAGUUUG 18 14668
    BCL11A-12453 + GGAAUCCAGCCUAAGUUUG 19 14669
    BCL11A-12454 + CGGAAUCCAGCCUAAGUUUG 20 14670
    BCL11A-12455 + GCGGAAUCCAGCCUAAGUUUG 21 14671
    BCL11A-12456 + CGCGGAAUCCAGCCUAAGUUUG 22 14672
    BCL11A-12457 + ACGCGGAAUCCAGCCUAAGUUUG 23 14673
    BCL11A-12458 + AACGCGGAAUCCAGCCUAAGUUUG 24 14674
    BCL11A-12459 + CUCCCGACUCCGCGGACU 18 14675
    BCL11A-12460 + UCUCCCGACUCCGCGGACU 19 14676
    BCL11A-12461 + CUCUCCCGACUCCGCGGACU 20 14677
    BCL11A-12462 + CCUCUCCCGACUCCGCGGACU 21 14678
    BCL11A-12463 + CCCUCUCCCGACUCCGCGGACU 22 14679
    BCL11A-12464 + CCCCUCUCCCGACUCCGCGGACU 23 14680
    BCL11A-12465 + GCCCCUCUCCCGACUCCGCGGACU 24 14681
    BCL11A-12466 + CGAGCCCGCGGCUGCGCU 18 14682
    BCL11A-12467 + CCGAGCCCGCGGCUGCGCU 19 14683
    BCL11A-10239 + CCCGAGCCCGCGGCUGCGCU 20 14684
    BCL11A-12468 + CCCCGAGCCCGCGGCUGCGCU 21 14685
    BCL11A-12469 + GCCCCGAGCCCGCGGCUGCGCU 22 14686
    BCL11A-12470 + AGCCCCGAGCCCGCGGCUGCGCU 23 14687
    BCL11A-12471 + AAGCCCCGAGCCCGCGGCUGCGCU 24 14688
    BCL11A-12472 + AGGCUGCAGCCCCGGGCU 18 14689
    BCL11A-12473 + GAGGCUGCAGCCCCGGGCU 19 14690
    BCL11A-10240 + GGAGGCUGCAGCCCCGGGCU 20 14691
    BCL11A-12474 + GGGAGGCUGCAGCCCCGGGCU 21 14692
    BCL11A-12475 + CGGGAGGCUGCAGCCCCGGGCU 22 14693
    BCL11A-12476 + CCGGGAGGCUGCAGCCCCGGGCU 23 14694
    BCL11A-12477 + ACCGGGAGGCUGCAGCCCCGGGCU 24 14695
    BCL11A-12478 + GCGGAAUCCAGCCUAAGU 18 14696
    BCL11A-12479 + CGCGGAAUCCAGCCUAAGU 19 14697
    BCL11A-12480 + ACGCGGAAUCCAGCCUAAGU 20 14698
    BCL11A-12481 + AACGCGGAAUCCAGCCUAAGU 21 14699
    BCL11A-12482 + CAACGCGGAAUCCAGCCUAAGU 22 14700
    BCL11A-12483 + GCAACGCGGAAUCCAGCCUAAGU 23 14701
    BCL11A-12484 + GGCAACGCGGAAUCCAGCCUAAGU 24 14702
    BCL11A-12485 + CAUUUUCUUACGGUGAGU 18 14703
    BCL11A-12486 + CCAUUUUCUUACGGUGAGU 19 14704
    BCL11A-10244 + CCCAUUUUCUUACGGUGAGU 20 14705
    BCL11A-12487 + CCCCAUUUUCUUACGGUGAGU 21 14706
    BCL11A-12488 + CCCCCAUUUUCUUACGGUGAGU 22 14707
    BCL11A-12489 + CCCCCCAUUUUCUUACGGUGAGU 23 14708
    BCL11A-12490 + CCCCCCCAUUUUCUUACGGUGAGU 24 14709
    BCL11A-12491 + CGCGCUCGCUCCCCGCGU 18 14710
    BCL11A-12492 + CCGCGCUCGCUCCCCGCGU 19 14711
    BCL11A-12493 + GCCGCGCUCGCUCCCCGCGU 20 14712
    BCL11A-12494 + CGCCGCGCUCGCUCCCCGCGU 21 14713
    BCL11A-12495 + CCGCCGCGCUCGCUCCCCGCGU 22 14714
    BCL11A-12496 + GCCGCCGCGCUCGCUCCCCGCGU 23 14715
    BCL11A-12497 + CGCCGCCGCGCUCGCUCCCCGCGU 24 14716
    BCL11A-12498 + CAGCGGGCGAGGGGAGGU 18 14717
    BCL11A-12499 + GCAGCGGGCGAGGGGAGGU 19 14718
    BCL11A-10247 + CGCAGCGGGCGAGGGGAGGU 20 14719
    BCL11A-12500 + CCGCAGCGGGCGAGGGGAGGU 21 14720
    BCL11A-12501 + UCCGCAGCGGGCGAGGGGAGGU 22 14721
    BCL11A-12502 + CUCCGCAGCGGGCGAGGGGAGGU 23 14722
    BCL11A-12503 + GCUCCGCAGCGGGCGAGGGGAGGU 24 14723
    BCL11A-12504 + GUUUGGAGGGCUGCGGGU 18 14724
    BCL11A-12505 + AGUUUGGAGGGCUGCGGGU 19 14725
    BCL11A-12506 + AAGUUUGGAGGGCUGCGGGU 20 14726
    BCL11A-12507 + UAAGUUUGGAGGGCUGCGGGU 21 14727
    BCL11A-12508 + CUAAGUUUGGAGGGCUGCGGGU 22 14728
    BCL11A-12509 + CCUAAGUUUGGAGGGCUGCGGGU 23 14729
    BCL11A-12510 + GCCUAAGUUUGGAGGGCUGCGGGU 24 14730
    BCL11A-12511 + UGCCACUUUCUCACUAUU 18 14731
    BCL11A-12512 + GUGCCACUUUCUCACUAUU 19 14732
    BCL11A-12513 + AGUGCCACUUUCUCACUAUU 20 14733
    BCL11A-12514 + CAGUGCCACUUUCUCACUAUU 21 14734
    BCL11A-12515 + ACAGUGCCACUUUCUCACUAUU 22 14735
    BCL11A-12516 + CACAGUGCCACUUUCUCACUAUU 23 14736
    BCL11A-12517 + CCACAGUGCCACUUUCUCACUAUU 24 14737
    BCL11A-12518 + GAAAAAUCACCCGAAGUU 18 14738
    BCL11A-12519 + AGAAAAAUCACCCGAAGUU 19 14739
    BCL11A-12520 + AAGAAAAAUCACCCGAAGUU 20 14740
    BCL11A-12521 + AAAGAAAAAUCACCCGAAGUU 21 14741
    BCL11A-12522 + CAAAGAAAAAUCACCCGAAGUU 22 14742
    BCL11A-12523 + GCAAAGAAAAAUCACCCGAAGUU 23 14743
    BCL11A-12524 + AGCAAAGAAAAAUCACCCGAAGUU 24 14744
    BCL11A-12525 + CGGAAUCCAGCCUAAGUU 18 14745
    BCL11A-12526 + GCGGAAUCCAGCCUAAGUU 19 14746
    BCL11A-10257 + CGCGGAAUCCAGCCUAAGUU 20 14747
    BCL11A-12527 + ACGCGGAAUCCAGCCUAAGUU 21 14748
    BCL11A-12528 + AACGCGGAAUCCAGCCUAAGUU 22 14749
    BCL11A-12529 + CAACGCGGAAUCCAGCCUAAGUU 23 14750
    BCL11A-12530 + GCAACGCGGAAUCCAGCCUAAGUU 24 14751
    BCL11A-12531 + GAAUCAUUGCAUUCCUUU 18 14752
    BCL11A-12532 + GGAAUCAUUGCAUUCCUUU 19 14753
    BCL11A-12533 + UGGAAUCAUUGCAUUCCUUU 20 14754
    BCL11A-12534 + GUGGAAUCAUUGCAUUCCUUU 21 14755
    BCL11A-12535 + AGUGGAAUCAUUGCAUUCCUUU 22 14756
    BCL11A-12536 + GAGUGGAAUCAUUGCAUUCCUUU 23 14757
    BCL11A-12537 + GGAGUGGAAUCAUUGCAUUCCUUU 24 14758
    BCL11A-12538 - CCACUCACCGUAAGAAAA 18 14759
    BCL11A-12539 - CCCACUCACCGUAAGAAAA 19 14760
    BCL11A-10024 - UCCCACUCACCGUAAGAAAA 20 14761
    BCL11A-12540 - UUCCCACUCACCGUAAGAAAA 21 14762
    BCL11A-12541 - CUUCCCACUCACCGUAAGAAAA 22 14763
    BCL11A-12542 - GCUUCCCACUCACCGUAAGAAAA 23 14764
    BCL11A-12543 - UGCUUCCCACUCACCGUAAGAAAA 24 14765
    BCL11A-12544 - CCCACUCACCGUAAGAAA 18 14766
    BCL11A-12545 - UCCCACUCACCGUAAGAAA 19 14767
    BCL11A-12546 - UUCCCACUCACCGUAAGAAA 20 14768
    BCL11A-12547 - CUUCCCACUCACCGUAAGAAA 21 14769
    BCL11A-12548 - GCUUCCCACUCACCGUAAGAAA 22 14770
    BCL11A-12549 - UGCUUCCCACUCACCGUAAGAAA 23 14771
    BCL11A-12550 - UUGCUUCCCACUCACCGUAAGAAA 24 14772
    BCL11A-12551 - UGGGAGCUGGUGGGGAAA 18 14773
    BCL11A-12552 - GUGGGAGCUGGUGGGGAAA 19 14774
    BCL11A-10028 - GGUGGGAGCUGGUGGGGAAA 20 14775
    BCL11A-12553 - GGGUGGGAGCUGGUGGGGAAA 21 14776
    BCL11A-12554 - GGGGUGGGAGCUGGUGGGGAAA 22 14777
    BCL11A-12555 - GGGGGUGGGAGCUGGUGGGGAAA 23 14778
    BCL11A-12556 - UGGGGGUGGGAGCUGGUGGGGAAA 24 14779
    BCL11A-12557 - AACGAUUCCCGGGGAGAA 18 14780
    BCL11A-12558 - AAACGAUUCCCGGGGAGAA 19 14781
    BCL11A-12559 - AAAACGAUUCCCGGGGAGAA 20 14782
    BCL11A-12560 - AAAAACGAUUCCCGGGGAGAA 21 14783
    BCL11A-12561 - AAAAAACGAUUCCCGGGGAGAA 22 14784
    BCL11A-12562 - UAAAAAACGAUUCCCGGGGAGAA 23 14785
    BCL11A-12563 - CUAAAAAACGAUUCCCGGGGAGAA 24 14786
    BCL11A-12564 - UUUAUUUCUCUUUUCGAA 18 14787
    BCL11A-12565 - CUUUAUUUCUCUUUUCGAA 19 14788
    BCL11A-12566 - GCUUUAUUUCUCUUUUCGAA 20 14789
    BCL11A-12567 - CGCUUUAUUUCUCUUUUCGAA 21 14790
    BCL11A-12568 - CCGCUUUAUUUCUCUUUUCGAA 22 14791
    BCL11A-12569 - GCCGCUUUAUUUCUCUUUUCGAA 23 14792
    BCL11A-12570 - CGCCGCUUUAUUUCUCUUUUCGAA 24 14793
    BCL11A-12571 - GUGGGAGCUGGUGGGGAA 18 14794
    BCL11A-12572 - GGUGGGAGCUGGUGGGGAA 19 14795
    BCL11A-10032 - GGGUGGGAGCUGGUGGGGAA 20 14796
    BCL11A-12573 - GGGGUGGGAGCUGGUGGGGAA 21 14797
    BCL11A-12574 - GGGGGUGGGAGCUGGUGGGGAA 22 14798
    BCL11A-12575 - UGGGGGUGGGAGCUGGUGGGGAA 23 14799
    BCL11A-12576 - CUGGGGGUGGGAGCUGGUGGGGAA 24 14800
    BCL11A-12577 - GAAAGUGGCACUGUGGAA 18 14801
    BCL11A-12578 - AGAAAGUGGCACUGUGGAA 19 14802
    BCL11A-10033 - GAGAAAGUGGCACUGUGGAA 20 14803
    BCL11A-12579 - UGAGAAAGUGGCACUGUGGAA 21 14804
    BCL11A-12580 - GUGAGAAAGUGGCACUGUGGAA 22 14805
    BCL11A-12581 - AGUGAGAAAGUGGCACUGUGGAA 23 14806
    BCL11A-12582 - UAGUGAGAAAGUGGCACUGUGGAA 24 14807
    BCL11A-12583 - CUCACGGUCAAGUGUGCA 18 14808
    BCL11A-12584 - GCUCACGGUCAAGUGUGCA 19 14809
    BCL11A-12585 - CGCUCACGGUCAAGUGUGCA 20 14810
    BCL11A-12586 - GCGCUCACGGUCAAGUGUGCA 21 14811
    BCL11A-12587 - CGCGCUCACGGUCAAGUGUGCA 22 14812
    BCL11A-12588 - GCGCGCUCACGGUCAAGUGUGCA 23 14813
    BCL11A-12589 - AGCGCGCUCACGGUCAAGUGUGCA 24 14814
    BCL11A-12590 - GGAGAGGGGCCGCGGCGA 18 14815
    BCL11A-12591 - GGGAGAGGGGCCGCGGCGA 19 14816
    BCL11A-10043 - CGGGAGAGGGGCCGCGGCGA 20 14817
    BCL11A-12592 - UCGGGAGAGGGGCCGCGGCGA 21 14818
    BCL11A-12593 - GUCGGGAGAGGGGCCGCGGCGA 22 14819
    BCL11A-12594 - AGUCGGGAGAGGGGCCGCGGCGA 23 14820
    BCL11A-12595 - GAGUCGGGAGAGGGGCCGCGGCGA 24 14821
    BCL11A-12596 - CCGUGGGACCGGGAAGGA 18 14822
    BCL11A-12597 - GCCGUGGGACCGGGAAGGA 19 14823
    BCL11A-10045 - AGCCGUGGGACCGGGAAGGA 20 14824
    BCL11A-12598 - GAGCCGUGGGACCGGGAAGGA 21 14825
    BCL11A-12599 - AGAGCCGUGGGACCGGGAAGGA 22 14826
    BCL11A-12600 - GAGAGCCGUGGGACCGGGAAGGA 23 14827
    BCL11A-12601 - GGAGAGCCGUGGGACCGGGAAGGA 24 14828
    BCL11A-12602 - GAGUCCGCGGAGUCGGGA 18 14829
    BCL11A-12603 - UGAGUCCGCGGAGUCGGGA 19 14830
    BCL11A-12604 - CUGAGUCCGCGGAGUCGGGA 20 14831
    BCL11A-12605 - CCUGAGUCCGCGGAGUCGGGA 21 14832
    BCL11A-12606 - UCCUGAGUCCGCGGAGUCGGGA 22 14833
    BCL11A-12607 - CUCCUGAGUCCGCGGAGUCGGGA 23 14834
    BCL11A-12608 - GCUCCUGAGUCCGCGGAGUCGGGA 24 14835
    BCL11A-12609 - GGCGUCCACACGCGGGGA 18 14836
    BCL11A-12610 - UGGCGUCCACACGCGGGGA 19 14837
    BCL11A-12611 - CUGGCGUCCACACGCGGGGA 20 14838
    BCL11A-12612 - CCUGGCGUCCACACGCGGGGA 21 14839
    BCL11A-12613 - CCCUGGCGUCCACACGCGGGGA 22 14840
    BCL11A-12614 - CCCCUGGCGUCCACACGCGGGGA 23 14841
    BCL11A-12615 - GCCCCUGGCGUCCACACGCGGGGA 24 14842
    BCL11A-12616 - GCGCGGCGGCGGCGGGGA 18 14843
    BCL11A-12617 - AGCGCGGCGGCGGCGGGGA 19 14844
    BCL11A-10051 - GAGCGCGGCGGCGGCGGGGA 20 14845
    BCL11A-12618 - CGAGCGCGGCGGCGGCGGGGA 21 14846
    BCL11A-12619 - GCGAGCGCGGCGGCGGCGGGGA 22 14847
    BCL11A-12620 - AGCGAGCGCGGCGGCGGCGGGGA 23 14848
    BCL11A-12621 - GAGCGAGCGCGGCGGCGGCGGGGA 24 14849
    BCL11A-12622 - GGUGGGAGCUGGUGGGGA 18 14850
    BCL11A-12623 - GGGUGGGAGCUGGUGGGGA 19 14851
    BCL11A-12624 - GGGGUGGGAGCUGGUGGGGA 20 14852
    BCL11A-12625 - GGGGGUGGGAGCUGGUGGGGA 21 14853
    BCL11A-12626 - UGGGGGUGGGAGCUGGUGGGGA 22 14854
    BCL11A-12627 - CUGGGGGUGGGAGCUGGUGGGGA 23 14855
    BCL11A-12628 - CCUGGGGGUGGGAGCUGGUGGGGA 24 14856
    BCL11A-12629 - ACGGGGAGAGCCGUGGGA 18 14857
    BCL11A-12630 - GACGGGGAGAGCCGUGGGA 19 14858
    BCL11A-12631 - CGACGGGGAGAGCCGUGGGA 20 14859
    BCL11A-12632 - GCGACGGGGAGAGCCGUGGGA 21 14860
    BCL11A-12633 - GGCGACGGGGAGAGCCGUGGGA 22 14861
    BCL11A-12634 - CGGCGACGGGGAGAGCCGUGGGA 23 14862
    BCL11A-12635 - GCGGCGACGGGGAGAGCCGUGGGA 24 14863
    BCL11A-12636 - AGAAAGUGGCACUGUGGA 18 14864
    BCL11A-12637 - GAGAAAGUGGCACUGUGGA 19 14865
    BCL11A-12638 - UGAGAAAGUGGCACUGUGGA 20 14866
    BCL11A-12639 - GUGAGAAAGUGGCACUGUGGA 21 14867
    BCL11A-12640 - AGUGAGAAAGUGGCACUGUGGA 22 14868
    BCL11A-12641 - UAGUGAGAAAGUGGCACUGUGGA 23 14869
    BCL11A-12642 - AUAGUGAGAAAGUGGCACUGUGGA 24 14870
    BCL11A-12643 - CGCCAGUUUUGCAAAAUA 18 14871
    BCL11A-12644 - CCGCCAGUUUUGCAAAAUA 19 14872
    BCL11A-12645 - CCCGCCAGUUUUGCAAAAUA 20 14873
    BCL11A-12646 - CCCCGCCAGUUUUGCAAAAUA 21 14874
    BCL11A-12647 - GCCCCGCCAGUUUUGCAAAAUA 22 14875
    BCL11A-12648 - CGCCCCGCCAGUUUUGCAAAAUA 23 14876
    BCL11A-12649 - CCGCCCCGCCAGUUUUGCAAAAUA 24 14877
    BCL11A-12650 - GUAGUCAUCCCCACAAUA 18 14878
    BCL11A-12651 - AGUAGUCAUCCCCACAAUA 19 14879
    BCL11A-12652 - AAGUAGUCAUCCCCACAAUA 20 14880
    BCL11A-12653 - AAAGUAGUCAUCCCCACAAUA 21 14881
    BCL11A-12654 - GAAAGUAGUCAUCCCCACAAUA 22 14882
    BCL11A-12655 - GGAAAGUAGUCAUCCCCACAAUA 23 14883
    BCL11A-12656 - AGGAAAGUAGUCAUCCCCACAAUA 24 14884
    BCL11A-12657 - GGGAAGUGGGUGUGCGUA 18 14885
    BCL11A-12658 - GGGGAAGUGGGUGUGCGUA 19 14886
    BCL11A-10055 - AGGGGAAGUGGGUGUGCGUA 20 14887
    BCL11A-12659 - GAGGGGAAGUGGGUGUGCGUA 21 14888
    BCL11A-12660 - GGAGGGGAAGUGGGUGUGCGUA 22 14889
    BCL11A-12661 - GGGAGGGGAAGUGGGUGUGCGUA 23 14890
    BCL11A-12662 - GGGGAGGGGAAGUGGGUGUGCGUA 24 14891
    BCL11A-12663 - UAAGAAAAUGGGGGGGUA 18 14892
    BCL11A-12664 - GUAAGAAAAUGGGGGGGUA 19 14893
    BCL11A-10056 - CGUAAGAAAAUGGGGGGGUA 20 14894
    BCL11A-12665 - CCGUAAGAAAAUGGGGGGGUA 21 14895
    BCL11A-12666 - ACCGUAAGAAAAUGGGGGGGUA 22 14896
    BCL11A-12667 - CACCGUAAGAAAAUGGGGGGGUA 23 14897
    BCL11A-12668 - UCACCGUAAGAAAAUGGGGGGGUA 24 14898
    BCL11A-12669 - AACAACUCACAUGCAAAC 18 14899
    BCL11A-12670 - GAACAACUCACAUGCAAAC 19 14900
    BCL11A-12671 - CGAACAACUCACAUGCAAAC 20 14901
    BCL11A-12672 - GCGAACAACUCACAUGCAAAC 21 14902
    BCL11A-12673 - UGCGAACAACUCACAUGCAAAC 22 14903
    BCL11A-12674 - UUGCGAACAACUCACAUGCAAAC 23 14904
    BCL11A-12675 - GUUGCGAACAACUCACAUGCAAAC 24 14905
    BCL11A-12676 - CCGCUGCGGAGCUGUAAC 18 14906
    BCL11A-12677 - CCCGCUGCGGAGCUGUAAC 19 14907
    BCL11A-12678 - GCCCGCUGCGGAGCUGUAAC 20 14908
    BCL11A-12679 - CGCCCGCUGCGGAGCUGUAAC 21 14909
    BCL11A-12680 - UCGCCCGCUGCGGAGCUGUAAC 22 14910
    BCL11A-12681 - CUCGCCCGCUGCGGAGCUGUAAC 23 14911
    BCL11A-12682 - CCUCGCCCGCUGCGGAGCUGUAAC 24 14912
    BCL11A-12683 - GGCCCCUGGCGUCCACAC 18 14913
    BCL11A-12684 - CGGCCCCUGGCGUCCACAC 19 14914
    BCL11A-12685 - UCGGCCCCUGGCGUCCACAC 20 14915
    BCL11A-12686 - UUCGGCCCCUGGCGUCCACAC 21 14916
    BCL11A-12687 - CUUCGGCCCCUGGCGUCCACAC 22 14917
    BCL11A-12688 - ACUUCGGCCCCUGGCGUCCACAC 23 14918
    BCL11A-12689 - UACUUCGGCCCCUGGCGUCCACAC 24 14919
    BCL11A-12690 - GCGCGGGCUCCUGGAGAC 18 14920
    BCL11A-12691 - CGCGCGGGCUCCUGGAGAC 19 14921
    BCL11A-12692 - CCGCGCGGGCUCCUGGAGAC 20 14922
    BCL11A-12693 - GCCGCGCGGGCUCCUGGAGAC 21 14923
    BCL11A-12694 - GGCCGCGCGGGCUCCUGGAGAC 22 14924
    BCL11A-12695 - AGGCCGCGCGGGCUCCUGGAGAC 23 14925
    BCL11A-12696 - CAGGCCGCGCGGGCUCCUGGAGAC 24 14926
    BCL11A-12697 - GAGAGGGGCCGCGGCGAC 18 14927
    BCL11A-12698 - GGAGAGGGGCCGCGGCGAC 19 14928
    BCL11A-10061 - GGGAGAGGGGCCGCGGCGAC 20 14929
    BCL11A-12699 - CGGGAGAGGGGCCGCGGCGAC 21 14930
    BCL11A-12700 - UCGGGAGAGGGGCCGCGGCGAC 22 14931
    BCL11A-12701 - GUCGGGAGAGGGGCCGCGGCGAC 23 14932
    BCL11A-12702 - AGUCGGGAGAGGGGCCGCGGCGAC 24 14933
    BCL11A-12703 - CGUGGGACCGGGAAGGAC 18 14934
    BCL11A-12704 - CCGUGGGACCGGGAAGGAC 19 14935
    BCL11A-10062 - GCCGUGGGACCGGGAAGGAC 20 14936
    BCL11A-12705 - AGCCGUGGGACCGGGAAGGAC 21 14937
    BCL11A-12706 - GAGCCGUGGGACCGGGAAGGAC 22 14938
    BCL11A-12707 - AGAGCCGUGGGACCGGGAAGGAC 23 14939
    BCL11A-12708 - GAGAGCCGUGGGACCGGGAAGGAC 24 14940
    BCL11A-12709 - CGGGGAGAGCCGUGGGAC 18 14941
    BCL11A-12710 - ACGGGGAGAGCCGUGGGAC 19 14942
    BCL11A-10065 - GACGGGGAGAGCCGUGGGAC 20 14943
    BCL11A-12711 - CGACGGGGAGAGCCGUGGGAC 21 14944
    BCL11A-12712 - GCGACGGGGAGAGCCGUGGGAC 22 14945
    BCL11A-12713 - GGCGACGGGGAGAGCCGUGGGAC 23 14946
    BCL11A-12714 - CGGCGACGGGGAGAGCCGUGGGAC 24 14947
    BCL11A-12715 - ACAACUCACAUGCAAACC 18 14948
    BCL11A-12716 - AACAACUCACAUGCAAACC 19 14949
    BCL11A-10066 - GAACAACUCACAUGCAAACC 20 14950
    BCL11A-12717 - CGAACAACUCACAUGCAAACC 21 14951
    BCL11A-12718 - GCGAACAACUCACAUGCAAACC 22 14952
    BCL11A-12719 - UGCGAACAACUCACAUGCAAACC 23 14953
    BCL11A-12720 - UUGCGAACAACUCACAUGCAAACC 24 14954
    BCL11A-12721 - GGGGAGAGCCGUGGGACC 18 14955
    BCL11A-12722 - CGGGGAGAGCCGUGGGACC 19 14956
    BCL11A-10070 - ACGGGGAGAGCCGUGGGACC 20 14957
    BCL11A-12723 - GACGGGGAGAGCCGUGGGACC 21 14958
    BCL11A-12724 - CGACGGGGAGAGCCGUGGGACC 22 14959
    BCL11A-12725 - GCGACGGGGAGAGCCGUGGGACC 23 14960
    BCL11A-12726 - GGCGACGGGGAGAGCCGUGGGACC 24 14961
    BCL11A-12727 - UCGGCCUUGGGGGCGCCC 18 14962
    BCL11A-12728 - CUCGGCCUUGGGGGCGCCC 19 14963
    BCL11A-12729 - GCUCGGCCUUGGGGGCGCCC 20 14964
    BCL11A-12730 - GGCUCGGCCUUGGGGGCGCCC 21 14965
    BCL11A-12731 - UGGCUCGGCCUUGGGGGCGCCC 22 14966
    BCL11A-12732 - CUGGCUCGGCCUUGGGGGCGCCC 23 14967
    BCL11A-12733 - CCUGGCUCGGCCUUGGGGGCGCCC 24 14968
    BCL11A-12734 - GUCUAAAAAACGAUUCCC 18 14969
    BCL11A-12735 - AGUCUAAAAAACGAUUCCC 19 14970
    BCL11A-10082 - AAGUCUAAAAAACGAUUCCC 20 14971
    BCL11A-12736 - CAAGUCUAAAAAACGAUUCCC 21 14972
    BCL11A-12737 - ACAAGUCUAAAAAACGAUUCCC 22 14973
    BCL11A-12738 - UACAAGUCUAAAAAACGAUUCCC 23 14974
    BCL11A-12739 - GUACAAGUCUAAAAAACGAUUCCC 24 14975
    BCL11A-12740 - GCCCGCGCUUCCCCAGCC 18 14976
    BCL11A-12741 - CGCCCGCGCUUCCCCAGCC 19 14977
    BCL11A-10084 - CCGCCCGCGCUUCCCCAGCC 20 14978
    BCL11A-12742 - UCCGCCCGCGCUUCCCCAGCC 21 14979
    BCL11A-12743 - CUCCGCCCGCGCUUCCCCAGCC 22 14980
    BCL11A-12744 - CCUCCGCCCGCGCUUCCCCAGCC 23 14981
    BCL11A-12745 - CCCUCCGCCCGCGCUUCCCCAGCC 24 14982
    BCL11A-12746 - AGUUUCCCGAGCGCAGCC 18 14983
    BCL11A-12747 - AAGUUUCCCGAGCGCAGCC 19 14984
    BCL11A-12748 - AAAGUUUCCCGAGCGCAGCC 20 14985
    BCL11A-12749 - CAAAGUUUCCCGAGCGCAGCC 21 14986
    BCL11A-12750 - GCAAAGUUUCCCGAGCGCAGCC 22 14987
    BCL11A-12751 - GGCAAAGUUUCCCGAGCGCAGCC 23 14988
    BCL11A-12752 - GGGCAAAGUUUCCCGAGCGCAGCC 24 14989
    BCL11A-12753 - GCGGCGACGGGGAGAGCC 18 14990
    BCL11A-12754 - CGCGGCGACGGGGAGAGCC 19 14991
    BCL11A-12755 - CCGCGGCGACGGGGAGAGCC 20 14992
    BCL11A-12756 - GCCGCGGCGACGGGGAGAGCC 21 14993
    BCL11A-12757 - GGCCGCGGCGACGGGGAGAGCC 22 14994
    BCL11A-12758 - GGGCCGCGGCGACGGGGAGAGCC 23 14995
    BCL11A-12759 - GGGGCCGCGGCGACGGGGAGAGCC 24 14996
    BCL11A-12760 - CCGGUCCCUGGCUCGGCC 18 14997
    BCL11A-12761 - CCCGGUCCCUGGCUCGGCC 19 14998
    BCL11A-12762 - UCCCGGUCCCUGGCUCGGCC 20 14999
    BCL11A-12763 - CCAGGCCGCGCGGGCUCC 18 15000
    BCL11A-12764 - UCCAGGCCGCGCGGGCUCC 19 15001
    BCL11A-10091 - UUCCAGGCCGCGCGGGCUCC 20 15002
    BCL11A-12765 - UUUCCAGGCCGCGCGGGCUCC 21 15003
    BCL11A-12766 - CUUUCCAGGCCGCGCGGGCUCC 22 15004
    BCL11A-12767 - UCUUUCCAGGCCGCGCGGGCUCC 23 15005
    BCL11A-12768 - CUCUUUCCAGGCCGCGCGGGCUCC 24 15006
    BCL11A-12769 - UUCUUUGCUGUCCUCUCC 18 15007
    BCL11A-12770 - UUUCUUUGCUGUCCUCUCC 19 15008
    BCL11A-12771 - UUUUCUUUGCUGUCCUCUCC 20 15009
    BCL11A-12772 - UUUUUCUUUGCUGUCCUCUCC 21 15010
    BCL11A-12773 - AUUUUUCUUUGCUGUCCUCUCC 22 15011
    BCL11A-12774 - GAUUUUUCUUUGCUGUCCUCUCC 23 15012
    BCL11A-12775 - UGAUUUUUCUUUGCUGUCCUCUCC 24 15013
    BCL11A-12776 - CCCGGCGCUCCUGAGUCC 18 15014
    BCL11A-12777 - CCCCGGCGCUCCUGAGUCC 19 15015
    BCL11A-12778 - CCCCCGGCGCUCCUGAGUCC 20 15016
    BCL11A-12779 - GCCCCCGGCGCUCCUGAGUCC 21 15017
    BCL11A-12780 - GGCCCCCGGCGCUCCUGAGUCC 22 15018
    BCL11A-12781 - GGGCCCCCGGCGCUCCUGAGUCC 23 15019
    BCL11A-12782 - GGGGCCCCCGGCGCUCCUGAGUCC 24 15020
    BCL11A-12783 - GUACGGAGGAGGGUGUCC 18 15021
    BCL11A-12784 - CGUACGGAGGAGGGUGUCC 19 15022
    BCL11A-10094 - GCGUACGGAGGAGGGUGUCC 20 15023
    BCL11A-12785 - UGCGUACGGAGGAGGGUGUCC 21 15024
    BCL11A-12786 - GUGCGUACGGAGGAGGGUGUCC 22 15025
    BCL11A-12787 - UGUGCGUACGGAGGAGGGUGUCC 23 15026
    BCL11A-12788 - GUGUGCGUACGGAGGAGGGUGUCC 24 15027
    BCL11A-12789 - AGUCUAAAAAACGAUUCC 18 15028
    BCL11A-12790 - AAGUCUAAAAAACGAUUCC 19 15029
    BCL11A-10095 - CAAGUCUAAAAAACGAUUCC 20 15030
    BCL11A-12791 - ACAAGUCUAAAAAACGAUUCC 21 15031
    BCL11A-12792 - UACAAGUCUAAAAAACGAUUCC 22 15032
    BCL11A-12793 - GUACAAGUCUAAAAAACGAUUCC 23 15033
    BCL11A-12794 - AGUACAAGUCUAAAAAACGAUUCC 24 15034
    BCL11A-12795 - CGCCCGCGCUUCCCCAGC 18 15035
    BCL11A-12796 - CCGCCCGCGCUUCCCCAGC 19 15036
    BCL11A-12797 - UCCGCCCGCGCUUCCCCAGC 20 15037
    BCL11A-12798 - CUCCGCCCGCGCUUCCCCAGC 21 15038
    BCL11A-12799 - CCUCCGCCCGCGCUUCCCCAGC 22 15039
    BCL11A-12800 - CCCUCCGCCCGCGCUUCCCCAGC 23 15040
    BCL11A-12801 - UCCCUCCGCCCGCGCUUCCCCAGC 24 15041
    BCL11A-12802 - CACGGUCAAGUGUGCAGC 18 15042
    BCL11A-12803 - UCACGGUCAAGUGUGCAGC 19 15043
    BCL11A-10100 - CUCACGGUCAAGUGUGCAGC 20 15044
    BCL11A-12804 - GCUCACGGUCAAGUGUGCAGC 21 15045
    BCL11A-12805 - CGCUCACGGUCAAGUGUGCAGC 22 15046
    BCL11A-12806 - GCGCUCACGGUCAAGUGUGCAGC 23 15047
    BCL11A-12807 - CGCGCUCACGGUCAAGUGUGCAGC 24 15048
    BCL11A-12808 - CCCCUGGCGUCCACACGC 18 15049
    BCL11A-12809 - GCCCCUGGCGUCCACACGC 19 15050
    BCL11A-10103 - GGCCCCUGGCGUCCACACGC 20 15051
    BCL11A-12810 - CGGCCCCUGGCGUCCACACGC 21 15052
    BCL11A-12811 - UCGGCCCCUGGCGUCCACACGC 22 15053
    BCL11A-12812 - UUCGGCCCCUGGCGUCCACACGC 23 15054
    BCL11A-12813 - CUUCGGCCCCUGGCGUCCACACGC 24 15055
    BCL11A-12814 - CCCCUCUUUCCAGGCCGC 18 15056
    BCL11A-12815 - UCCCCUCUUUCCAGGCCGC 19 15057
    BCL11A-12816 - GUCCCCUCUUUCCAGGCCGC 20 15058
    BCL11A-12817 - GGUCCCCUCUUUCCAGGCCGC 21 15059
    BCL11A-12818 - CGGUCCCCUCUUUCCAGGCCGC 22 15060
    BCL11A-12819 - CCGGUCCCCUCUUUCCAGGCCGC 23 15061
    BCL11A-12820 - CCCGGUCCCCUCUUUCCAGGCCGC 24 15062
    BCL11A-12821 - GCCGCCUUUUGUUCCGGC 18 15063
    BCL11A-12822 - UGCCGCCUUUUGUUCCGGC 19 15064
    BCL11A-12823 - CUGCCGCCUUUUGUUCCGGC 20 15065
    BCL11A-12824 - ACUGCCGCCUUUUGUUCCGGC 21 15066
    BCL11A-12825 - CACUGCCGCCUUUUGUUCCGGC 22 15067
    BCL11A-12826 - GCACUGCCGCCUUUUGUUCCGGC 23 15068
    BCL11A-12827 - GGCACUGCCGCCUUUUGUUCCGGC 24 15069
    BCL11A-12828 - AGCGAGCGCGGCGGCGGC 18 15070
    BCL11A-12829 - GAGCGAGCGCGGCGGCGGC 19 15071
    BCL11A-10114 - GGAGCGAGCGCGGCGGCGGC 20 15072
    BCL11A-12830 - GGGAGCGAGCGCGGCGGCGGC 21 15073
    BCL11A-12831 - GGGGAGCGAGCGCGGCGGCGGC 22 15074
    BCL11A-12832 - CGGGGAGCGAGCGCGGCGGCGGC 23 15075
    BCL11A-12833 - GCGGGGAGCGAGCGCGGCGGCGGC 24 15076
    BCL11A-12834 - CCGAGCGCAGCCGCGGGC 18 15077
    BCL11A-12835 - CCCGAGCGCAGCCGCGGGC 19 15078
    BCL11A-12836 - UCCCGAGCGCAGCCGCGGGC 20 15079
    BCL11A-12837 - UUCCCGAGCGCAGCCGCGGGC 21 15080
    BCL11A-12838 - UUUCCCGAGCGCAGCCGCGGGC 22 15081
    BCL11A-12839 - GUUUCCCGAGCGCAGCCGCGGGC 23 15082
    BCL11A-12840 - AGUUUCCCGAGCGCAGCCGCGGGC 24 15083
    BCL11A-12841 - UCCAGGCCGCGCGGGCUC 18 15084
    BCL11A-12842 - UUCCAGGCCGCGCGGGCUC 19 15085
    BCL11A-12843 - UUUCCAGGCCGCGCGGGCUC 20 15086
    BCL11A-12844 - CUUUCCAGGCCGCGCGGGCUC 21 15087
    BCL11A-12845 - UCUUUCCAGGCCGCGCGGGCUC 22 15088
    BCL11A-12846 - CUCUUUCCAGGCCGCGCGGGCUC 23 15089
    BCL11A-12847 - CCUCUUUCCAGGCCGCGCGGGCUC 24 15090
    BCL11A-12848 - UCCUGAGUCCGCGGAGUC 18 15091
    BCL11A-12849 - CUCCUGAGUCCGCGGAGUC 19 15092
    BCL11A-10128 - GCUCCUGAGUCCGCGGAGUC 20 15093
    BCL11A-12850 - CGCUCCUGAGUCCGCGGAGUC 21 15094
    BCL11A-12851 - GCGCUCCUGAGUCCGCGGAGUC 22 15095
    BCL11A-12852 - GGCGCUCCUGAGUCCGCGGAGUC 23 15096
    BCL11A-12853 - CGGCGCUCCUGAGUCCGCGGAGUC 24 15097
    BCL11A-12854 - CGUACGGAGGAGGGUGUC 18 15098
    BCL11A-12855 - GCGUACGGAGGAGGGUGUC 19 15099
    BCL11A-10130 - UGCGUACGGAGGAGGGUGUC 20 15100
    BCL11A-12856 - GUGCGUACGGAGGAGGGUGUC 21 15101
    BCL11A-12857 - UGUGCGUACGGAGGAGGGUGUC 22 15102
    BCL11A-12858 - GUGUGCGUACGGAGGAGGGUGUC 23 15103
    BCL11A-12859 - GGUGUGCGUACGGAGGAGGGUGUC 24 15104
    BCL11A-12860 - AAGUCUAAAAAACGAUUC 18 15105
    BCL11A-12861 - CAAGUCUAAAAAACGAUUC 19 15106
    BCL11A-12862 - ACAAGUCUAAAAAACGAUUC 20 15107
    BCL11A-12863 - UACAAGUCUAAAAAACGAUUC 21 15108
    BCL11A-12864 - GUACAAGUCUAAAAAACGAUUC 22 15109
    BCL11A-12865 - AGUACAAGUCUAAAAAACGAUUC 23 15110
    BCL11A-12866 - GAGUACAAGUCUAAAAAACGAUUC 24 15111
    BCL11A-12867 - CUCCUCGGGCAAAGUUUC 18 15112
    BCL11A-12868 - UCUCCUCGGGCAAAGUUUC 19 15113
    BCL11A-12869 - CUCUCCUCGGGCAAAGUUUC 20 15114
    BCL11A-12870 - CCUCUCCUCGGGCAAAGUUUC 21 15115
    BCL11A-12871 - UCCUCUCCUCGGGCAAAGUUUC 22 15116
    BCL11A-12872 - GUCCUCUCCUCGGGCAAAGUUUC 23 15117
    BCL11A-12873 - UGUCCUCUCCUCGGGCAAAGUUUC 24 15118
    BCL11A-12874 - UCACGGUCAAGUGUGCAG 18 15119
    BCL11A-12875 - CUCACGGUCAAGUGUGCAG 19 15120
    BCL11A-10145 - GCUCACGGUCAAGUGUGCAG 20 15121
    BCL11A-12876 - CGCUCACGGUCAAGUGUGCAG 21 15122
    BCL11A-12877 - GCGCUCACGGUCAAGUGUGCAG 22 15123
    BCL11A-12878 - CGCGCUCACGGUCAAGUGUGCAG 23 15124
    BCL11A-12879 - GCGCGCUCACGGUCAAGUGUGCAG 24 15125
    BCL11A-12880 - UUCCCGGGGAGAAAAGAG 18 15126
    BCL11A-12881 - AUUCCCGGGGAGAAAAGAG 19 15127
    BCL11A-12882 - GAUUCCCGGGGAGAAAAGAG 20 15128
    BCL11A-12883 - CGAUUCCCGGGGAGAAAAGAG 21 15129
    BCL11A-12884 - ACGAUUCCCGGGGAGAAAAGAG 22 15130
    BCL11A-12885 - AACGAUUCCCGGGGAGAAAAGAG 23 15131
    BCL11A-12886 - AAACGAUUCCCGGGGAGAAAAGAG 24 15132
    BCL11A-12887 - GCUCCUGAGUCCGCGGAG 18 15133
    BCL11A-12888 - CGCUCCUGAGUCCGCGGAG 19 15134
    BCL11A-12889 - GCGCUCCUGAGUCCGCGGAG 20 15135
    BCL11A-12890 - GGCGCUCCUGAGUCCGCGGAG 21 15136
    BCL11A-12891 - CGGCGCUCCUGAGUCCGCGGAG 22 15137
    BCL11A-12892 - CCGGCGCUCCUGAGUCCGCGGAG 23 15138
    BCL11A-12893 - CCCGGCGCUCCUGAGUCCGCGGAG 24 15139
    BCL11A-12894 - AGUCCGCGGAGUCGGGAG 18 15140
    BCL11A-12895 - GAGUCCGCGGAGUCGGGAG 19 15141
    BCL11A-10150 - UGAGUCCGCGGAGUCGGGAG 20 15142
    BCL11A-12896 - CUGAGUCCGCGGAGUCGGGAG 21 15143
    BCL11A-12897 - CCUGAGUCCGCGGAGUCGGGAG 22 15144
    BCL11A-12898 - UCCUGAGUCCGCGGAGUCGGGAG 23 15145
    BCL11A-12899 - CUCCUGAGUCCGCGGAGUCGGGAG 24 15146
    BCL11A-12900 - CGCGGCGGCGGCGGGGAG 18 15147
    BCL11A-12901 - GCGCGGCGGCGGCGGGGAG 19 15148
    BCL11A-10152 - AGCGCGGCGGCGGCGGGGAG 20 15149
    BCL11A-12902 - GAGCGCGGCGGCGGCGGGGAG 21 15150
    BCL11A-12903 - CGAGCGCGGCGGCGGCGGGGAG 22 15151
    BCL11A-12904 - GCGAGCGCGGCGGCGGCGGGGAG 23 15152
    BCL11A-12905 - AGCGAGCGCGGCGGCGGCGGGGAG 24 15153
    BCL11A-11434 - CGCGUGUGUGGGGGGGAG 18 15154
    BCL11A-11435 - CCGCGUGUGUGGGGGGGAG 19 15155
    BCL11A-11436 - UCCGCGUGUGUGGGGGGGAG 20 15156
    BCL11A-11437 - GUCCGCGUGUGUGGGGGGGAG 21 15157
    BCL11A-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 15158
    BCL11A-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 15159
    BCL11A-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 15160
    BCL11A-12906 - GCCCCUGGCGUCCACACG 18 15161
    BCL11A-12907 - GGCCCCUGGCGUCCACACG 19 15162
    BCL11A-10156 - CGGCCCCUGGCGUCCACACG 20 15163
    BCL11A-12908 - UCGGCCCCUGGCGUCCACACG 21 15164
    BCL11A-12909 - UUCGGCCCCUGGCGUCCACACG 22 15165
    BCL11A-12910 - CUUCGGCCCCUGGCGUCCACACG 23 15166
    BCL11A-12911 - ACUUCGGCCCCUGGCGUCCACACG 24 15167
    BCL11A-12912 - AGAGGGGCCGCGGCGACG 18 15168
    BCL11A-12913 - GAGAGGGGCCGCGGCGACG 19 15169
    BCL11A-10158 - GGAGAGGGGCCGCGGCGACG 20 15170
    BCL11A-12914 - GGGAGAGGGGCCGCGGCGACG 21 15171
    BCL11A-12915 - CGGGAGAGGGGCCGCGGCGACG 22 15172
    BCL11A-12916 - UCGGGAGAGGGGCCGCGGCGACG 23 15173
    BCL11A-12917 - GUCGGGAGAGGGGCCGCGGCGACG 24 15174
    BCL11A-12918 - GAAGUGGGUGUGCGUACG 18 15175
    BCL11A-12919 - GGAAGUGGGUGUGCGUACG 19 15176
    BCL11A-12920 - GGGAAGUGGGUGUGCGUACG 20 15177
    BCL11A-12921 - GGGGAAGUGGGUGUGCGUACG 21 15178
    BCL11A-12922 - AGGGGAAGUGGGUGUGCGUACG 22 15179
    BCL11A-12923 - GAGGGGAAGUGGGUGUGCGUACG 23 15180
    BCL11A-12924 - GGAGGGGAAGUGGGUGUGCGUACG 24 15181
    BCL11A-12925 - UCUAAAAAACGAUUCCCG 18 15182
    BCL11A-12926 - GUCUAAAAAACGAUUCCCG 19 15183
    BCL11A-10164 - AGUCUAAAAAACGAUUCCCG 20 15184
    BCL11A-12927 - AAGUCUAAAAAACGAUUCCCG 21 15185
    BCL11A-12928 - CAAGUCUAAAAAACGAUUCCCG 22 15186
    BCL11A-12929 - ACAAGUCUAAAAAACGAUUCCCG 23 15187
    BCL11A-12930 - UACAAGUCUAAAAAACGAUUCCCG 24 15188
    BCL11A-12931 - CGGCGACGGGGAGAGCCG 18 15189
    BCL11A-12932 - GCGGCGACGGGGAGAGCCG 19 15190
    BCL11A-10166 - CGCGGCGACGGGGAGAGCCG 20 15191
    BCL11A-12933 - CCGCGGCGACGGGGAGAGCCG 21 15192
    BCL11A-12934 - GCCGCGGCGACGGGGAGAGCCG 22 15193
    BCL11A-12935 - GGCCGCGGCGACGGGGAGAGCCG 23 15194
    BCL11A-12936 - GGGCCGCGGCGACGGGGAGAGCCG 24 15195
    BCL11A-12937 - CCCUGGCGUCCACACGCG 18 15196
    BCL11A-12938 - CCCCUGGCGUCCACACGCG 19 15197
    BCL11A-10175 - GCCCCUGGCGUCCACACGCG 20 15198
    BCL11A-12939 - GGCCCCUGGCGUCCACACGCG 21 15199
    BCL11A-12940 - CGGCCCCUGGCGUCCACACGCG 22 15200
    BCL11A-12941 - UCGGCCCCUGGCGUCCACACGCG 23 15201
    BCL11A-12942 - UUCGGCCCCUGGCGUCCACACGCG 24 15202
    BCL11A-12943 - GGGAGAGGGGCCGCGGCG 18 15203
    BCL11A-12944 - CGGGAGAGGGGCCGCGGCG 19 15204
    BCL11A-12945 - UCGGGAGAGGGGCCGCGGCG 20 15205
    BCL11A-12946 - GUCGGGAGAGGGGCCGCGGCG 21 15206
    BCL11A-12947 - AGUCGGGAGAGGGGCCGCGGCG 22 15207
    BCL11A-12948 - GAGUCGGGAGAGGGGCCGCGGCG 23 15208
    BCL11A-12949 - GGAGUCGGGAGAGGGGCCGCGGCG 24 15209
    BCL11A-12950 - GGAGCGAGCGCGGCGGCG 18 15210
    BCL11A-12951 - GGGAGCGAGCGCGGCGGCG 19 15211
    BCL11A-12952 - GGGGAGCGAGCGCGGCGGCG 20 15212
    BCL11A-12953 - CGGGGAGCGAGCGCGGCGGCG 21 15213
    BCL11A-12954 - GCGGGGAGCGAGCGCGGCGGCG 22 15214
    BCL11A-12955 - CGCGGGGAGCGAGCGCGGCGGCG 23 15215
    BCL11A-12956 - ACGCGGGGAGCGAGCGCGGCGGCG 24 15216
    BCL11A-12957 - GCGAGCGCGGCGGCGGCG 18 15217
    BCL11A-12958 - AGCGAGCGCGGCGGCGGCG 19 15218
    BCL11A-10179 - GAGCGAGCGCGGCGGCGGCG 20 15219
    BCL11A-12959 - GGAGCGAGCGCGGCGGCGGCG 21 15220
    BCL11A-12960 - GGGAGCGAGCGCGGCGGCGGCG 22 15221
    BCL11A-12961 - GGGGAGCGAGCGCGGCGGCGGCG 23 15222
    BCL11A-12962 - CGGGGAGCGAGCGCGGCGGCGGCG 24 15223
    BCL11A-12963 - GCCGUGGGACCGGGAAGG 18 15224
    BCL11A-12964 - AGCCGUGGGACCGGGAAGG 19 15225
    BCL11A-12965 - GAGCCGUGGGACCGGGAAGG 20 15226
    BCL11A-12966 - AGAGCCGUGGGACCGGGAAGG 21 15227
    BCL11A-12967 - GAGAGCCGUGGGACCGGGAAGG 22 15228
    BCL11A-12968 - GGAGAGCCGUGGGACCGGGAAGG 23 15229
    BCL11A-12969 - GGGAGAGCCGUGGGACCGGGAAGG 24 15230
    BCL11A-12970 - AGAAAAUGGGGGGGUAGG 18 15231
    BCL11A-12971 - AAGAAAAUGGGGGGGUAGG 19 15232
    BCL11A-12972 - UAAGAAAAUGGGGGGGUAGG 20 15233
    BCL11A-12973 - GUAAGAAAAUGGGGGGGUAGG 21 15234
    BCL11A-12974 - CGUAAGAAAAUGGGGGGGUAGG 22 15235
    BCL11A-12975 - CCGUAAGAAAAUGGGGGGGUAGG 23 15236
    BCL11A-12976 - ACCGUAAGAAAAUGGGGGGGUAGG 24 15237
    BCL11A-12977 - AAGUGGGUGUGCGUACGG 18 15238
    BCL11A-12978 - GAAGUGGGUGUGCGUACGG 19 15239
    BCL11A-10191 - GGAAGUGGGUGUGCGUACGG 20 15240
    BCL11A-12979 - GGGAAGUGGGUGUGCGUACGG 21 15241
    BCL11A-12980 - GGGGAAGUGGGUGUGCGUACGG 22 15242
    BCL11A-12981 - AGGGGAAGUGGGUGUGCGUACGG 23 15243
    BCL11A-12982 - GAGGGGAAGUGGGUGUGCGUACGG 24 15244
    BCL11A-12983 - CGGUCAAGUGUGCAGCGG 18 15245
    BCL11A-12984 - ACGGUCAAGUGUGCAGCGG 19 15246
    BCL11A-12985 - CACGGUCAAGUGUGCAGCGG 20 15247
    BCL11A-12986 - UCACGGUCAAGUGUGCAGCGG 21 15248
    BCL11A-12987 - CUCACGGUCAAGUGUGCAGCGG 22 15249
    BCL11A-12988 - GCUCACGGUCAAGUGUGCAGCGG 23 15250
    BCL11A-12989 - CGCUCACGGUCAAGUGUGCAGCGG 24 15251
    BCL11A-12990 - GAGCGAGCGCGGCGGCGG 18 15252
    BCL11A-12991 - GGAGCGAGCGCGGCGGCGG 19 15253
    BCL11A-10196 - GGGAGCGAGCGCGGCGGCGG 20 15254
    BCL11A-12992 - GGGGAGCGAGCGCGGCGGCGG 21 15255
    BCL11A-12993 - CGGGGAGCGAGCGCGGCGGCGG 22 15256
    BCL11A-12994 - GCGGGGAGCGAGCGCGGCGGCGG 23 15257
    BCL11A-12995 - CGCGGGGAGCGAGCGCGGCGGCGG 24 15258
    BCL11A-12996 - CUGAGUCCGCGGAGUCGG 18 15259
    BCL11A-12997 - CCUGAGUCCGCGGAGUCGG 19 15260
    BCL11A-12998 - UCCUGAGUCCGCGGAGUCGG 20 15261
    BCL11A-12999 - CUCCUGAGUCCGCGGAGUCGG 21 15262
    BCL11A-13000 - GCUCCUGAGUCCGCGGAGUCGG 22 15263
    BCL11A-13001 - CGCUCCUGAGUCCGCGGAGUCGG 23 15264
    BCL11A-13002 - GCGCUCCUGAGUCCGCGGAGUCGG 24 15265
    BCL11A-13003 - gaaaauggggggguaggg 18 15266
    BCL11A-13004 - AGAAAAUGGGGGGGUAGGG 19 15267
    BCL11A-10200 - AAGAAAAUGGGGGGGUAGGG 20 15268
    BCL11A-13005 - UAAGAAAAUGGGGGGGUAGGG 21 15269
    BCL11A-13006 - GUAAGAAAAUGGGGGGGUAGGG 22 15270
    BCL11A-13007 - CGUAAGAAAAUGGGGGGGUAGGG 23 15271
    BCL11A-13008 - CCGUAAGAAAAUGGGGGGGUAGGG 24 15272
    BCL11A-13009 - AGGGGCCGCGGCGACGGG 18 15273
    BCL11A-13010 - GAGGGGCCGCGGCGACGGG 19 15274
    BCL11A-13011 - AGAGGGGCCGCGGCGACGGG 20 15275
    BCL11A-13012 - GAGAGGGGCCGCGGCGACGGG 21 15276
    BCL11A-13013 - GGAGAGGGGCCGCGGCGACGGG 22 15277
    BCL11A-13014 - GGGAGAGGGGCCGCGGCGACGGG 23 15278
    BCL11A-13015 - CGGGAGAGGGGCCGCGGCGACGGG 24 15279
    BCL11A-13016 - GAGAGCCGUGGGACCGGG 18 15280
    BCL11A-13017 - GGAGAGCCGUGGGACCGGG 19 15281
    BCL11A-13018 - GGGAGAGCCGUGGGACCGGG 20 15282
    BCL11A-13019 - GGGGAGAGCCGUGGGACCGGG 21 15283
    BCL11A-13020 - CGGGGAGAGCCGUGGGACCGGG 22 15284
    BCL11A-13021 - ACGGGGAGAGCCGUGGGACCGGG 23 15285
    BCL11A-13022 - GACGGGGAGAGCCGUGGGACCGGG 24 15286
    BCL11A-13023 - UAAAAAACGAUUCCCGGG 18 15287
    BCL11A-13024 - CUAAAAAACGAUUCCCGGG 19 15288
    BCL11A-13025 - UCUAAAAAACGAUUCCCGGG 20 15289
    BCL11A-13026 - GUCUAAAAAACGAUUCCCGGG 21 15290
    BCL11A-13027 - AGUCUAAAAAACGAUUCCCGGG 22 15291
    BCL11A-13028 - AAGUCUAAAAAACGAUUCCCGGG 23 15292
    BCL11A-13029 - CAAGUCUAAAAAACGAUUCCCGGG 24 15293
    BCL11A-13030 - GGUCAAGUGUGCAGCGGG 18 15294
    BCL11A-13031 - CGGUCAAGUGUGCAGCGGG 19 15295
    BCL11A-10202 - ACGGUCAAGUGUGCAGCGGG 20 15296
    BCL11A-13032 - CACGGUCAAGUGUGCAGCGGG 21 15297
    BCL11A-13033 - UCACGGUCAAGUGUGCAGCGGG 22 15298
    BCL11A-13034 - CUCACGGUCAAGUGUGCAGCGGG 23 15299
    BCL11A-13035 - GCUCACGGUCAAGUGUGCAGCGGG 24 15300
    BCL11A-13036 - GAGCGCGGCGGCGGCGGG 18 15301
    BCL11A-13037 - CGAGCGCGGCGGCGGCGGG 19 15302
    BCL11A-13038 - GCGAGCGCGGCGGCGGCGGG 20 15303
    BCL11A-13039 - AGCGAGCGCGGCGGCGGCGGG 21 15304
    BCL11A-13040 - GAGCGAGCGCGGCGGCGGCGGG 22 15305
    BCL11A-13041 - GGAGCGAGCGCGGCGGCGGCGGG 23 15306
    BCL11A-13042 - GGGAGCGAGCGCGGCGGCGGCGGG 24 15307
    BCL11A-13043 - AGCGCGGCGGCGGCGGGG 18 15308
    BCL11A-13044 - GAGCGCGGCGGCGGCGGGG 19 15309
    BCL11A-10206 - CGAGCGCGGCGGCGGCGGGG 20 15310
    BCL11A-13045 - GCGAGCGCGGCGGCGGCGGGG 21 15311
    BCL11A-13046 - AGCGAGCGCGGCGGCGGCGGGG 22 15312
    BCL11A-13047 - GAGCGAGCGCGGCGGCGGCGGGG 23 15313
    BCL11A-13048 - GGAGCGAGCGCGGCGGCGGCGGGG 24 15314
    BCL11A-13049 - CGUAAGAAAAUGGGGGGG 18 15315
    BCL11A-13050 - CCGUAAGAAAAUGGGGGGG 19 15316
    BCL11A-13051 - ACCGUAAGAAAAUGGGGGGG 20 15317
    BCL11A-13052 - CACCGUAAGAAAAUGGGGGGG 21 15318
    BCL11A-13053 - UCACCGUAAGAAAAUGGGGGGG 22 15319
    BCL11A-13054 - CUCACCGUAAGAAAAUGGGGGGG 23 15320
    BCL11A-13055 - ACUCACCGUAAGAAAAUGGGGGGG 24 15321
    BCL11A-13056 - CACAUGCAAACCUGGGGG 18 15322
    BCL11A-13057 - UCACAUGCAAACCUGGGGG 19 15323
    BCL11A-10210 - CUCACAUGCAAACCUGGGGG 20 15324
    BCL11A-13058 - ACUCACAUGCAAACCUGGGGG 21 15325
    BCL11A-13059 - AACUCACAUGCAAACCUGGGGG 22 15326
    BCL11A-13060 - CAACUCACAUGCAAACCUGGGGG 23 15327
    BCL11A-13061 - ACAACUCACAUGCAAACCUGGGGG 24 15328
    BCL11A-13062 - UCACAUGCAAACCUGGGG 18 15329
    BCL11A-13063 - CUCACAUGCAAACCUGGGG 19 15330
    BCL11A-13064 - ACUCACAUGCAAACCUGGGG 20 15331
    BCL11A-13065 - AACUCACAUGCAAACCUGGGG 21 15332
    BCL11A-13066 - CAACUCACAUGCAAACCUGGGG 22 15333
    BCL11A-13067 - ACAACUCACAUGCAAACCUGGGG 23 15334
    BCL11A-13068 - AACAACUCACAUGCAAACCUGGGG 24 15335
    BCL11A-11486 - GAGUCCGCGUGUGUGGGG 18 15336
    BCL11A-11487 - AGAGUCCGCGUGUGUGGGG 19 15337
    BCL11A-9577 - UAGAGUCCGCGUGUGUGGGG 20 15338
    BCL11A-11488 - UUAGAGUCCGCGUGUGUGGGG 21 15339
    BCL11A-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 15340
    BCL11A-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 15341
    BCL11A-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 15342
    BCL11A-11492 - AGAGUCCGCGUGUGUGGG 18 15343
    BCL11A-11493 - UAGAGUCCGCGUGUGUGGG 19 15344
    BCL11A-9769 - UUAGAGUCCGCGUGUGUGGG 20 15345
    BCL11A-11494 - UUUAGAGUCCGCGUGUGUGGG 21 15346
    BCL11A-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 15347
    BCL11A-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 15348
    BCL11A-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 15349
    BCL11A-13069 - CCUGGGGGUGGGAGCUGG 18 15350
    BCL11A-13070 - ACCUGGGGGUGGGAGCUGG 19 15351
    BCL11A-10217 - AACCUGGGGGUGGGAGCUGG 20 15352
    BCL11A-13071 - AAACCUGGGGGUGGGAGCUGG 21 15353
    BCL11A-13072 - CAAACCUGGGGGUGGGAGCUGG 22 15354
    BCL11A-13073 - GCAAACCUGGGGGUGGGAGCUGG 23 15355
    BCL11A-13074 - UGCAAACCUGGGGGUGGGAGCUGG 24 15356
    BCL11A-11498 - UAGAGUCCGCGUGUGUGG 18 15357
    BCL11A-11499 - UUAGAGUCCGCGUGUGUGG 19 15358
    BCL11A-9578 - UUUAGAGUCCGCGUGUGUGG 20 15359
    BCL11A-11500 - UUUUAGAGUCCGCGUGUGUGG 21 15360
    BCL11A-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 15361
    BCL11A-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 15362
    BCL11A-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 15363
    BCL11A-13075 - ACUCACCGUAAGAAAAUG 18 15364
    BCL11A-13076 - CACUCACCGUAAGAAAAUG 19 15365
    BCL11A-10221 - CCACUCACCGUAAGAAAAUG 20 15366
    BCL11A-13077 - CCCACUCACCGUAAGAAAAUG 21 15367
    BCL11A-13078 - UCCCACUCACCGUAAGAAAAUG 22 15368
    BCL11A-13079 - UUCCCACUCACCGUAAGAAAAUG 23 15369
    BCL11A-13080 - CUUCCCACUCACCGUAAGAAAAUG 24 15370
    BCL11A-13081 - AGUGAGAAAGUGGCACUG 18 15371
    BCL11A-13082 - UAGUGAGAAAGUGGCACUG 19 15372
    BCL11A-10222 - AUAGUGAGAAAGUGGCACUG 20 15373
    BCL11A-13083 - AAUAGUGAGAAAGUGGCACUG 21 15374
    BCL11A-13084 - CAAUAGUGAGAAAGUGGCACUG 22 15375
    BCL11A-13085 - ACAAUAGUGAGAAAGUGGCACUG 23 15376
    BCL11A-13086 - CACAAUAGUGAGAAAGUGGCACUG 24 15377
    BCL11A-13087 - ACCUGGGGGUGGGAGCUG 18 15378
    BCL11A-13088 - AACCUGGGGGUGGGAGCUG 19 15379
    BCL11A-13089 - AAACCUGGGGGUGGGAGCUG 20 15380
    BCL11A-13090 - CAAACCUGGGGGUGGGAGCUG 21 15381
    BCL11A-13091 - GCAAACCUGGGGGUGGGAGCUG 22 15382
    BCL11A-13092 - UGCAAACCUGGGGGUGGGAGCUG 23 15383
    BCL11A-13093 - AUGCAAACCUGGGGGUGGGAGCUG 24 15384
    BCL11A-13094 - ACCUCCCCUCGCCCGCUG 18 15385
    BCL11A-13095 - CACCUCCCCUCGCCCGCUG 19 15386
    BCL11A-10224 - CCACCUCCCCUCGCCCGCUG 20 15387
    BCL11A-13096 - CCCACCUCCCCUCGCCCGCUG 21 15388
    BCL11A-13097 - UCCCACCUCCCCUCGCCCGCUG 22 15389
    BCL11A-13098 - CUCCCACCUCCCCUCGCCCGCUG 23 15390
    BCL11A-13099 - CCUCCCACCUCCCCUCGCCCGCUG 24 15391
    BCL11A-13100 - UGGGGGUGGGAGCUGGUG 18 15392
    BCL11A-13101 - CUGGGGGUGGGAGCUGGUG 19 15393
    BCL11A-10228 - CCUGGGGGUGGGAGCUGGUG 20 15394
    BCL11A-13102 - ACCUGGGGGUGGGAGCUGGUG 21 15395
    BCL11A-13103 - AACCUGGGGGUGGGAGCUGGUG 22 15396
    BCL11A-13104 - AAACCUGGGGGUGGGAGCUGGUG 23 15397
    BCL11A-13105 - CAAACCUGGGGGUGGGAGCUGGUG 24 15398
    BCL11A-11518 - UUUUAGAGUCCGCGUGUG 18 15399
    BCL11A-11519 - AUUUUAGAGUCCGCGUGUG 19 15400
    BCL11A-9581 - CAUUUUAGAGUCCGCGUGUG 20 15401
    BCL11A-11520 - UCAUUUUAGAGUCCGCGUGUG 21 15402
    BCL11A-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 15403
    BCL11A-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 15404
    BCL11A-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 15405
    BCL11A-11524 - UUAGAGUCCGCGUGUGUG 18 15406
    BCL11A-11525 - UUUAGAGUCCGCGUGUGUG 19 15407
    BCL11A-9776 - UUUUAGAGUCCGCGUGUGUG 20 15408
    BCL11A-11526 - AUUUUAGAGUCCGCGUGUGUG 21 15409
    BCL11A-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 15410
    BCL11A-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 15411
    BCL11A-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 15412
    BCL11A-13106 - CACUCACCGUAAGAAAAU 18 15413
    BCL11A-13107 - CCACUCACCGUAAGAAAAU 19 15414
    BCL11A-10232 - CCCACUCACCGUAAGAAAAU 20 15415
    BCL11A-13108 - UCCCACUCACCGUAAGAAAAU 21 15416
    BCL11A-13109 - UUCCCACUCACCGUAAGAAAAU 22 15417
    BCL11A-13110 - CUUCCCACUCACCGUAAGAAAAU 23 15418
    BCL11A-13111 - GCUUCCCACUCACCGUAAGAAAAU 24 15419
    BCL11A-13112 - CGCUGCGGAGCUGUAACU 18 15420
    BCL11A-13113 - CCGCUGCGGAGCUGUAACU 19 15421
    BCL11A-10233 - CCCGCUGCGGAGCUGUAACU 20 15422
    BCL11A-13114 - GCCCGCUGCGGAGCUGUAACU 21 15423
    BCL11A-13115 - CGCCCGCUGCGGAGCUGUAACU 22 15424
    BCL11A-13116 - UCGCCCGCUGCGGAGCUGUAACU 23 15425
    BCL11A-13117 - CUCGCCCGCUGCGGAGCUGUAACU 24 15426
    BCL11A-13118 - UAGUGAGAAAGUGGCACU 18 15427
    BCL11A-13119 - AUAGUGAGAAAGUGGCACU 19 15428
    BCL11A-13120 - AAUAGUGAGAAAGUGGCACU 20 15429
    BCL11A-13121 - CAAUAGUGAGAAAGUGGCACU 21 15430
    BCL11A-13122 - ACAAUAGUGAGAAAGUGGCACU 22 15431
    BCL11A-13123 - CACAAUAGUGAGAAAGUGGCACU 23 15432
    BCL11A-13124 - CCACAAUAGUGAGAAAGUGGCACU 24 15433
    BCL11A-13125 - CGGUCCCUGGCUCGGCCU 18 15434
    BCL11A-13126 - CCGGUCCCUGGCUCGGCCU 19 15435
    BCL11A-10237 - CCCGGUCCCUGGCUCGGCCU 20 15436
    BCL11A-13127 - CACCUCCCCUCGCCCGCU 18 15437
    BCL11A-13128 - CCACCUCCCCUCGCCCGCU 19 15438
    BCL11A-13129 - CCCACCUCCCCUCGCCCGCU 20 15439
    BCL11A-13130 - UCCCACCUCCCCUCGCCCGCU 21 15440
    BCL11A-13131 - CUCCCACCUCCCCUCGCCCGCU 22 15441
    BCL11A-13132 - CCUCCCACCUCCCCUCGCCCGCU 23 15442
    BCL11A-13133 - CCCUCCCACCUCCCCUCGCCCGCU 24 15443
    BCL11A-13134 - CGAGCGCAGCCGCGGGCU 18 15444
    BCL11A-13135 - CCGAGCGCAGCCGCGGGCU 19 15445
    BCL11A-10241 - CCCGAGCGCAGCCGCGGGCU 20 15446
    BCL11A-13136 - UCCCGAGCGCAGCCGCGGGCU 21 15447
    BCL11A-13137 - UUCCCGAGCGCAGCCGCGGGCU 22 15448
    BCL11A-13138 - UUUCCCGAGCGCAGCCGCGGGCU 23 15449
    BCL11A-13139 - GUUUCCCGAGCGCAGCCGCGGGCU 24 15450
    BCL11A-13140 - CUCCUGAGUCCGCGGAGU 18 15451
    BCL11A-13141 - GCUCCUGAGUCCGCGGAGU 19 15452
    BCL11A-10243 - CGCUCCUGAGUCCGCGGAGU 20 15453
    BCL11A-13142 - GCGCUCCUGAGUCCGCGGAGU 21 15454
    BCL11A-13143 - GGCGCUCCUGAGUCCGCGGAGU 22 15455
    BCL11A-13144 - CGGCGCUCCUGAGUCCGCGGAGU 23 15456
    BCL11A-13145 - CCGGCGCUCCUGAGUCCGCGGAGU 24 15457
    BCL11A-13146 - AGUCAUCCCCACAAUAGU 18 15458
    BCL11A-13147 - UAGUCAUCCCCACAAUAGU 19 15459
    BCL11A-13148 - GUAGUCAUCCCCACAAUAGU 20 15460
    BCL11A-13149 - AGUAGUCAUCCCCACAAUAGU 21 15461
    BCL11A-13150 - AAGUAGUCAUCCCCACAAUAGU 22 15462
    BCL11A-13151 - AAAGUAGUCAUCCCCACAAUAGU 23 15463
    BCL11A-13152 - GAAAGUAGUCAUCCCCACAAUAGU 24 15464
    BCL11A-13153 - UUGCUUCCCACUCACCGU 18 15465
    BCL11A-13154 - GUUGCUUCCCACUCACCGU 19 15466
    BCL11A-13155 - GGUUGCUUCCCACUCACCGU 20 15467
    BCL11A-13156 - AGGUUGCUUCCCACUCACCGU 21 15468
    BCL11A-13157 - GAGGUUGCUUCCCACUCACCGU 22 15469
    BCL11A-13158 - GGAGGUUGCUUCCCACUCACCGU 23 15470
    BCL11A-13159 - GGGAGGUUGCUUCCCACUCACCGU 24 15471
    BCL11A-13160 - GGGGAAGUGGGUGUGCGU 18 15472
    BCL11A-13161 - AGGGGAAGUGGGUGUGCGU 19 15473
    BCL11A-13162 - GAGGGGAAGUGGGUGUGCGU 20 15474
    BCL11A-13163 - GGAGGGGAAGUGGGUGUGCGU 21 15475
    BCL11A-13164 - GGGAGGGGAAGUGGGUGUGCGU 22 15476
    BCL11A-13165 - GGGGAGGGGAAGUGGGUGUGCGU 23 15477
    BCL11A-13166 - CGGGGAGGGGAAGUGGGUGUGCGU 24 15478
    BCL11A-13167 - GUAAGAAAAUGGGGGGGU 18 15479
    BCL11A-13168 - CGUAAGAAAAUGGGGGGGU 19 15480
    BCL11A-10248 - CCGUAAGAAAAUGGGGGGGU 20 15481
    BCL11A-13169 - ACCGUAAGAAAAUGGGGGGGU 21 15482
    BCL11A-13170 - CACCGUAAGAAAAUGGGGGGGU 22 15483
    BCL11A-13171 - UCACCGUAAGAAAAUGGGGGGGU 23 15484
    BCL11A-13172 - CUCACCGUAAGAAAAUGGGGGGGU 24 15485
    BCL11A-13173 - ACAUGCAAACCUGGGGGU 18 15486
    BCL11A-13174 - CACAUGCAAACCUGGGGGU 19 15487
    BCL11A-10249 - UCACAUGCAAACCUGGGGGU 20 15488
    BCL11A-13175 - CUCACAUGCAAACCUGGGGGU 21 15489
    BCL11A-13176 - ACUCACAUGCAAACCUGGGGGU 22 15490
    BCL11A-13177 - AACUCACAUGCAAACCUGGGGGU 23 15491
    BCL11A-13178 - CAACUCACAUGCAAACCUGGGGGU 24 15492
    BCL11A-13179 - CUGGGGGUGGGAGCUGGU 18 15493
    BCL11A-13180 - CCUGGGGGUGGGAGCUGGU 19 15494
    BCL11A-10250 - ACCUGGGGGUGGGAGCUGGU 20 15495
    BCL11A-13181 - AACCUGGGGGUGGGAGCUGGU 21 15496
    BCL11A-13182 - AAACCUGGGGGUGGGAGCUGGU 22 15497
    BCL11A-13183 - CAAACCUGGGGGUGGGAGCUGGU 23 15498
    BCL11A-13184 - GCAAACCUGGGGGUGGGAGCUGGU 24 15499
    BCL11A-11572 - AUUUUAGAGUCCGCGUGU 18 15500
    BCL11A-11573 - CAUUUUAGAGUCCGCGUGU 19 15501
    BCL11A-11574 - UCAUUUUAGAGUCCGCGUGU 20 15502
    BCL11A-11575 - UUCAUUUUAGAGUCCGCGUGU 21 15503
    BCL11A-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 15504
    BCL11A-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 15505
    BCL11A-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 15506
    BCL11A-13185 - GCGUACGGAGGAGGGUGU 18 15507
    BCL11A-13186 - UGCGUACGGAGGAGGGUGU 19 15508
    BCL11A-13187 - GUGCGUACGGAGGAGGGUGU 20 15509
    BCL11A-13188 - UGUGCGUACGGAGGAGGGUGU 21 15510
    BCL11A-13189 - GUGUGCGUACGGAGGAGGGUGU 22 15511
    BCL11A-13190 - GGUGUGCGUACGGAGGAGGGUGU 23 15512
    BCL11A-13191 - GGGUGUGCGUACGGAGGAGGGUGU 24 15513
    BCL11A-11579 - UUUAGAGUCCGCGUGUGU 18 15514
    BCL11A-11580 - UUUUAGAGUCCGCGUGUGU 19 15515
    BCL11A-9586 - AUUUUAGAGUCCGCGUGUGU 20 15516
    BCL11A-11581 - CAUUUUAGAGUCCGCGUGUGU 21 15517
    BCL11A-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 15518
    BCL11A-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 15519
    BCL11A-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 15520
    BCL11A-13192 - GACUUGGGCGCUGCCCUU 18 15521
    BCL11A-13193 - AGACUUGGGCGCUGCCCUU 19 15522
    BCL11A-13194 - GAGACUUGGGCGCUGCCCUU 20 15523
    BCL11A-13195 - GGAGACUUGGGCGCUGCCCUU 21 15524
    BCL11A-13196 - UGGAGACUUGGGCGCUGCCCUU 22 15525
    BCL11A-13197 - CUGGAGACUUGGGCGCUGCCCUU 23 15526
    BCL11A-13198 - CCUGGAGACUUGGGCGCUGCCCUU 24 15527
    BCL11A-13199 - GGUCCCUGGCUCGGCCUU 18 15528
    BCL11A-13200 - CGGUCCCUGGCUCGGCCUU 19 15529
    BCL11A-10256 - CCGGUCCCUGGCUCGGCCUU 20 15530
    BCL11A-13201 - AAGAGGUGAGACUGGCUU 18 15531
    BCL11A-13202 - AAAGAGGUGAGACUGGCUU 19 15532
    BCL11A-13203 - AAAAGAGGUGAGACUGGCUU 20 15533
    BCL11A-13204 - GAAAAGAGGUGAGACUGGCUU 21 15534
    BCL11A-13205 - AGAAAAGAGGUGAGACUGGCUU 22 15535
    BCL11A-13206 - GAGAAAAGAGGUGAGACUGGCUU 23 15536
    BCL11A-13207 - GGAGAAAAGAGGUGAGACUGGCUU 24 15537
    BCL11A-13208 - AUGAACAAUGCUAAGGUU 18 15538
    BCL11A-13209 - AAUGAACAAUGCUAAGGUU 19 15539
    BCL11A-13210 - UAAUGAACAAUGCUAAGGUU 20 15540
    BCL11A-13211 - AUAAUGAACAAUGCUAAGGUU 21 15541
    BCL11A-13212 - AAUAAUGAACAAUGCUAAGGUU 22 15542
    BCL11A-13213 - AAAUAAUGAACAAUGCUAAGGUU 23 15543
    BCL11A-13214 - AAAAUAAUGAACAAUGCUAAGGUU 24 15544
    BCL11A-13215 - GCCGCUUUAUUUCUCUUU 18 15545
    BCL11A-13216 - CGCCGCUUUAUUUCUCUUU 19 15546
    BCL11A-13217 - CCGCCGCUUUAUUUCUCUUU 20 15547
    BCL11A-13218 - UCCGCCGCUUUAUUUCUCUUU 21 15548
    BCL11A-13219 - UUCCGCCGCUUUAUUUCUCUUU 22 15549
    BCL11A-13220 - UUUCCGCCGCUUUAUUUCUCUUU 23 15550
    BCL11A-13221 - CUUUCCGCCGCUUUAUUUCUCUUU 24 15551
  • Table 20A provides exemplary targeting domains for knocking down the BCL11A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL17A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL15A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 20A
    1st Tier
    Target
    DNA Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-13222 + ACACACCCCUCUCUCCC 17 15552
    BCL11A-9477 + CUUACGCGAGAAUUCCC 17 15553
    BCL11A-13223 + CCCUCUCUCCCCCUCGC 17 15554
    BCL11A-13224 + UCUAGUCCUGCGCGCUC 17 15555
    BCL11A-9638 - UUGAACUUGCAGCUCAG 17 15556
    BCL11A-9482 + UUAAGUGCUGGGGUUUG 17 15557
    BCL11A-13225 + CACGCGGACUCUAAAAU 17 15558
    BCL11A-13226 + AAUUGUGGGAGAGCCGU 17 15559
    BCL11A-13227 - GAUGUGUGUCCAUUGGU 17 15560
    BCL11A-13228 + UGCACACACCCCUCUCUCCC 20 15561
    BCL11A-9487 + UUACUUACGCGAGAAUUCCC 20 15562
    BCL11A-13229 + CACCCCUCUCUCCCCCUCGC 20 15563
    BCL11A-13230 + GCUUCUAGUCCUGCGCGCUC 20 15564
    BCL11A-9738 - CACUUGAACUUGCAGCUCAG 20 15565
    BCL11A-9491 + UGCUUAAGUGCUGGGGUUUG 20 15566
    BCL11A-13231 + AUGAAUUGUGGGAGAGCCGU 20 15567
    BCL11A-11567 - CCUGAUGUGUGUCCAUUGGU 20 15568
  • Table 20B provides exemplary targeting domains for knocking down the BCL11A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL11A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 20B
    2nd Tier
    DNA Target Site SEQ
    gRNA Name Strand Targeting Domain Length ID NO:
    BCL11A-13232 - CCCUCCCCGCACUGGCC 17 15569
    BCL11A-13233 - UUUUUUUUUUUUUUUUU 17 15570
    BCL11A-13234 - UCCCCCUCCCCGCACUGGCC 20 15571
    BCL11A-13235 + ACACACGCGGACUCUAAAAU 20 15572
    BCL11A-13236 - UUUUUUUUUUUUUUUUUUUU 20 15573
  • Table 20C provides exemplary targeting domains for knocking down the BCL11A gene selected according to the third tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to 1 kb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCL11A gene (e.g., reduce or eliminate BCL11A gene expression, BCL15A protein function, or the level of BCL11A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • TABLE 20C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length NO:
    BCL11A-13237 - GUGAGUACAAGUCUAAA 17 15574
    BCL11A-13238 - GCUGGUGGGGAAAGGGA 17 15575
    BCL11A-13239 - GUCCGGGAGCAACUCUA 17 15576
    BCL11A-13240 - CCUUUUGUGCCGGCUCC 17 15577
    BCL11A-13241 - ACCUGGCUUCCCUCCGC 17 15578
    BCL11A-9896 - GCUCAGCUCUCAACUUC 17 15579
    BCL11A-13242 - UCCUCUUUCCUCCUUUC 17 15580
    BCL11A-13243 - GGGAGAAAAGAGGUGAG 17 15581
    BCL11A-13244 - CAGCCCUCCAAACUUAG 17 15582
    BCL11A-13245 - CUUUUCGAAAAGGAAUG 17 15583
    BCL11A-13225 + CACGCGGACUCUAAAAU 17 15584
    BCL11A-10006 - GAGCGCAGCCGCGGGCU 17 15585
    BCL11A-13246 - GGAGUGAGUACAAGUCUAAA 20 15586
    BCL11A-13247 - GGAGCUGGUGGGGAAAGGGA 20 15587
    BCL11A-13248 - GGUGUCCGGGAGCAACUCUA 20 15588
    BCL11A-13249 - CUGCCUUUUGUGCCGGCUCC 20 15589
    BCL11A-13250 - UCUACCUGGCUUCCCUCCGC 20 15590
    BCL11A-10131 - GAGGCUCAGCUCUCAACUUC 20 15591
    BCL11A-13251 - uccuccucuuuccuccuuuc 20 15592
    BCL11A-13252 - CCGGGGAGAAAAGAGGUGAG 20 15593
    BCL11A-13253 - CCGCAGCCCUCCAAACUUAG 20 15594
    BCL11A-13254 - UCUCUUUUCGAAAAGGAAUG 20 15595
    BCL11A-13235 + ACACACGCGGACUCUAAAAU 20 15596
    BCL11A-10241 - CCCGAGCGCAGCCGCGGGCU 20 15597
  • Table 21A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and have a high level of orthogonality and starts with 5′G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 21A
    1st Tier
    Target
    DNA Site SEQ ID
    gRNA Name Strand Targeting Domain Length 5′ or 3′ NO:
    BCL11A-13255 + GCACUAGGUGAAAUCUC 17 5′ 15598
    BCL11A-13256 - GAAAGCAGUGUAAGGCU 17 5′ 15599
    BCL11A-13257 - GUAAUUAAGAAAGCAGUGUA 20 5′ 15600
    BCL11A-13258 + GUUGCACUAGGUGAAAUCUC 20 5′ 15601
    BCL11A-13259 - GGCUGUUUUGGAAUGUAGAG 20 5′ 15602
    BCL11A-13260 - GGCUGUUUUUGGAUCUU 17 3′ 15603
    BCL11A-13261 + GUGCUACUUAUACAAUUCAC 20 3′ 15604
    BCL11A-13262 + GAAAAUACUUACUGUACUGC 20 3′ 15605
  • Table 21B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 21B
    2nd Tier
    Target
    DNA Site SEQ ID
    gRNA Name Strand Targeting Domain Length 5′ or 3′ NO:
    BCL11A-13263 - AUUAAGAAAGCAGUGUA 17 5′ 15606
    BCL11A-13264 + AUUUUACUAGUGAAUUA 17 5′ 15607
    BCL11A-13265 + AUUUAAGACGGGAAAAC 17 5′ 15608
    BCL11A-13266 - AGAAAGCAGUGUAAGGC 17 5′ 15609
    BCL11A-13267 - UGUUUUGGAAUGUAGAG 17 5′ 15610
    BCL11A-13268 + ACAACUUGUGUUGCACU 17 5′ 15611
    BCL11A-13269 + UCUCACAUAAAAAUUUAAGA 20 5′ 15612
    BCL11A-13270 - UUGGAAUGUAGAGAGGCAGA 20 5′ 15613
    BCL11A-13271 + AUUAUUUUACUAGUGAAUUA 20 5′ 15614
    BCL11A-13272 + AAAAUUUAAGACGGGAAAAC 20 5′ 15615
    BCL11A-13273 + CUCACAUAAAAAUUUAAGAC 20 5′ 15616
    BCL11A-13274 + UACACAACUUGUGUUGCACU 20 5′ 15617
    BCL11A-13275 - UAAGAAAGCAGUGUAAGGCU 20 5′ 15618
    BCL11A-13276 - AUUAGAAUAAAAGGCUGUUU 20 5′ 15619
    BCL11A-13277 - UAUUUACAGCCAUAACA 17 3′ 15620
    BCL11A-13278 + AUACUUACUGUACUGCA 17 3′ 15621
    BCL11A-13279 + CACUGGAAACCCUGUUA 17 3′ 15622
    BCL11A-13280 - CUAUUUACAGCCAUAAC 17 3′ 15623
    BCL11A-13281 + CUACUUAUACAAUUCAC 17 3′ 15624
    BCL11A-13282 + AAUACUUACUGUACUGC 17 3′ 15625
    BCL11A-13283 + UACUUACUGUACUGCAG 17 3′ 15626
    BCL11A-13284 + UGUACUGCAGGGGAAUU 17 3′ 15627
    BCL11A-13285 - UGGGUAGCAGUGGCUUU 17 3′ 15628
    BCL11A-13286 - UGGCUUUAGGCUGUUUU 17 3′ 15629
    BCL11A-13287 - AACUAUUUACAGCCAUAACA 20 3′ 15630
    BCL11A-13288 + AAAAUACUUACUGUACUGCA 20 3′ 15631
    BCL11A-13289 + AUUCACUGGAAACCCUGUUA 20 3′ 15632
    BCL11A-13290 - AAACUAUUUACAGCCAUAAC 20 3′ 15633
    BCL11A-13291 + AAAUACUUACUGUACUGCAG 20 3′ 15634
    BCL11A-13292 + UACUGUACUGCAGGGGAAUU 20 3′ 15635
    BCL11A-13293 - UUAGGCUGUUUUUGGAUCUU 20 3′ 15636
    BCL11A-13294 - CAGUGGCUUUAGGCUGUUUU 20 3′ 15637
  • Table 21C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the third tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and starts with 5′G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 21C
    3rd Tier
    DNA Target Site SEQ ID
    gRNA Name Strand Targeting Domain Length 5′ or 3′ NO:
    BCL11A-13295 - GAAUGUAGAGAGGCAGA 17 5′ 15638
    BCL11A-13296 - GGAAUGUAGAGAGGCAG 17 5′ 15639
    BCL11A-13297 - GUAUUUUCUUUCAUUGG 17 3′ 15640
    BCL11A-13298 - GUAAGUAUUUUCUUUCAUUG 20 3′ 15641
  • Table 21D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 21D
    4th Tier
    Target
    DNA Site SEQ ID
    gRNA Name Strand Targeting Domain Length 5′ or 3′ NO:
    BCL11A-13299 - AAAAUAAUUAGAAUAAA 17 5′ 15642
    BCL11A-13300 + CACAUAAAAAUUUAAGA 17 5′ 15643
    BCL11A-13301 + ACAUAAAAAUUUAAGAC 17 5′ 15644
    BCL11A-13302 - UGUAAGGCUGGGCGCAG 17 5′ 15645
    BCL11A-13303 - AAUGUAGAGAGGCAGAG 17 5′ 15646
    BCL11A-13304 - AGAAUAAAAGGCUGUUU 17 5′ 15647
    BCL11A-13305 - AGUAAAAUAAUUAGAAUAAA 20 5′ 15648
    BCL11A-13306 - UUAAGAAAGCAGUGUAAGGC 20 5′ 15649
    BCL11A-13307 - CAGUGUAAGGCUGGGCGCAG 20 5′ 15650
    BCL11A-13308 - UUUGGAAUGUAGAGAGGCAG 20 5′ 15651
    BCL11A-13309 - UGGAAUGUAGAGAGGCAGAG 20 5′ 15652
    BCL11A-13310 - AGUAUUUUCUUUCAUUG 17 3′ 15653
    BCL11A-13311 - UAAGUAUUUUCUUUCAU 17 3′ 15654
    BCL11A-13312 - AAGUAUUUUCUUUCAUU 17 3′ 15655
    BCL11A-13313 - UAAGUAUUUUCUUUCAUUGG 20 3′ 15656
    BCL11A-13314 - CAGUAAGUAUUUUCUUUCAU 20 3′ 15657
    BCL11A-13315 - AGUAAGUAUUUUCUUUCAUU 20 3′ 15658
  • Table 21E provides targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene by dual targeting (e.g., dual double strand cleavage). It is contemplated herein that an upstream gRNA can be paired with a downstream gRNA to guide Cas9 nuclease pairs. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B, or include a targeting domain from Group C and a second targeting domain from Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. For example, BCL11A-13271 or BCL11A-13264 can be combined with BCL11A-13276; or BCL11A-13262 or BCL11A-13282 can be combined with BCL11A-13290 or BCL11A-13280.
  • TABLE 21E
    Group A Group B
    BCL11A-13271, BCL11A- BCL11A-13276
    13264
    Group C Group D
    BCL11A-13262, BCL11A- BCL11A-13290, BCL11A-
    13282 13280
  • Table 22A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), have a high level of orthogonality, and start with 5′G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 22A
    1st Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13316 GGGGCUGAUAUAACUUCU 18 5′ 15659
    BCL11A-13317 GAGGGGCUGAUAUAACUUCU 20 5′ 15660
    BCL11A-13318 GCAGAGGGGCUGAUAUAACUUCU 23 5′ 15661
    BCL11A-13319 GGCAGAGGGGCUGAUAUAACUUCU 24 5′ 15662
    BCL11A-13320 GCAAACUAUUUACAGCCAUAA 21 3′ 15663
    BCL11A-13321 GAAGCAAACUAUUUACAGCCAUAA 24 3′ 15664
    BCL11A-13322 GCCAUAACAGGGUUUCCA 18 3′ 15665
    BCL11A-13323 GUGAAUUGUAUAAGUAGCA 19 3′ 15666
    BCL11A-13324 GCAAAACUAGAAAGUUUUA 19 3′ 15667
    BCL11A-13325 GCAGUGGCUUUAGGCUGUUU 20 3′ 15668
    BCL11A-13326 GUAGCAGUGGCUUUAGGCUGUUU 23 3′ 15669
    BCL11A-13327 GGUAGCAGUGGCUUUAGGCUGUUU 24 3′ 15670
  • Table 22B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and have a high level of orthogonality. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 22B
    2nd Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13328 + UUUAUUCUAAUUAUUUUACUA 21 5′ 15671
    BCL11A-13329 + UUUUAUUCUAAUUAUUUUACUA 22 5′ 15672
    BCL11A-13330 + CUUUUAUUCUAAUUAUUUUACUA 23 5′ 15673
    BCL11A-13331 + CCUUUUAUUCUAAUUAUUUUACUA 24 5′ 15674
    BCL11A-13332 + UAUUUUACUAGUGAAUUA 18 5′ 15675
    BCL11A-13333 + UUAUUUUACUAGUGAAUUA 19 5′ 15676
    BCL11A-13334 + AUUAUUUUACUAGUGAAUUA 20 5′ 15677
    BCL11A-13335 + AAUUAUUUUACUAGUGAAUUA 21 5′ 15678
    BCL11A-13336 + UAAUUAUUUUACUAGUGAAUUA 22 5′ 15679
    BCL11A-13337 + CUAAUUAUUUUACUAGUGAAUUA 23 5′ 15680
    BCL11A-13338 + UCUAAUUAUUUUACUAGUGAAUUA 24 5′ 15681
    BCL11A-13339 AUUCACUAGUAAAAUAAU 18 5′ 15682
    BCL11A-13340 AAUUCACUAGUAAAAUAAU 19 5′ 15683
    BCL11A-13341 UAAUUCACUAGUAAAAUAAU 20 5′ 15684
    BCL11A-13342 AGGGGCUGAUAUAACUUCU 19 5′ 15685
    BCL11A-13343 AGAGGGGCUGAUAUAACUUCU 21 5′ 15686
    BCL11A-13344 CAGAGGGGCUGAUAUAACUUCU 22 5′ 15687
    BCL11A-13345 UAGAAUAAAAGGCUGUUU 18 5′ 15688
    BCL11A-13346 UUAGAAUAAAAGGCUGUUU 19 5′ 15689
    BCL11A-13347 AUUAGAAUAAAAGGCUGUUU 20 5′ 15690
    BCL11A-13348 AAUUAGAAUAAAAGGCUGUUU 21 5′ 15691
    BCL11A-13349 UAAUUAGAAUAAAAGGCUGUUU 22 5′ 15692
    BCL11A-13350 AUAAUUAGAAUAAAAGGCUGUUU 23 5′ 15693
    BCL11A-13351 AAUAAUUAGAAUAAAAGGCUGUUU 24 5′ 15694
    BCL11A-13352 + AUACUUACUGUACUGCAG 18 3′ 15695
    BCL11A-13353 + AAUACUUACUGUACUGCAG 19 3′ 15696
    BCL11A-13354 + AAAUACUUACUGUACUGCAG 20 3′ 15697
    BCL11A-13355 AACUAUUUACAGCCAUAA 18 3′ 15698
    BCL11A-13356 AAACUAUUUACAGCCAUAA 19 3′ 15699
    BCL11A-13357 CAAACUAUUUACAGCCAUAA 20 3′ 15700
    BCL11A-13358 AGCAAACUAUUUACAGCCAUAA 22 3′ 15701
    BCL11A-13359 AAGCAAACUAUUUACAGCCAUAA 23 3′ 15702
    BCL11A-13360 AGCCAUAACAGGGUUUCCA 19 3′ 15703
    BCL11A-13361 CAGCCAUAACAGGGUUUCCA 20 3′ 15704
    BCL11A-13362 ACAGCCAUAACAGGGUUUCCA 21 3′ 15705
    BCL11A-13363 UACAGCCAUAACAGGGUUUCCA 22 3′ 15706
    BCL11A-13364 UUACAGCCAUAACAGGGUUUCCA 23 3′ 15707
    BCL11A-13365 UUUACAGCCAUAACAGGGUUUCCA 24 3′ 15708
    BCL11A-13366 UGAAUUGUAUAAGUAGCA 18 3′ 15709
    BCL11A-13367 AGUGAAUUGUAUAAGUAGCA 20 3′ 15710
    BCL11A-13368 CAGUGAAUUGUAUAAGUAGCA 21 3′ 15711
    BCL11A-13369 CCAGUGAAUUGUAUAAGUAGCA 22 3′ 15712
    BCL11A-13370 UCCAGUGAAUUGUAUAAGUAGCA 23 3′ 15713
    BCL11A-13371 UUCCAGUGAAUUGUAUAAGUAGCA 24 3′ 15714
    BCL11A-13372 CAAAACUAGAAAGUUUUA 18 3′ 15715
    BCL11A-13373 AGCAAAACUAGAAAGUUUUA 20 3′ 15716
    BCL11A-13374 AGUGGCUUUAGGCUGUUU 18 3′ 15717
    BCL11A-13375 CAGUGGCUUUAGGCUGUUU 19 3′ 15718
    BCL11A-13376 AGCAGUGGCUUUAGGCUGUUU 21 3′ 15719
    BCL11A-13377 UAGCAGUGGCUUUAGGCUGUUU 22 3′ 15720
  • Table 22C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the third tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and start with 5′G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 22C
    3rd Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13378 + GAAAAUACUUACUGUACUGCAG 22 3′ 15721
    BCL11A-13379 GUUAAGCAAAACUAGAAAGUUUUA 24 3′ 15722
  • Table 22D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 22D
    4th Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13380 + AUUCUAAUUAUUUUACUA 18 5′ 15723
    BCL11A-13381 + UAUUCUAAUUAUUUUACUA 19 5′ 15724
    BCL11A-13382 + UUAUUCUAAUUAUUUUACUA 20 5′ 15725
    BCL11A-13383 AUAAUUCACUAGUAAAAUAAU 21 5′ 15726
    BCL11A-13384 CAUAAUUCACUAGUAAAAUAAU 22 5′ 15727
    BCL11A-13385 CCAUAAUUCACUAGUAAAAUAAU 23 5′ 15728
    BCL11A-13386 UCCAUAAUUCACUAGUAAAAUAAU 24 5′ 15729
    BCL11A-13387 + AAAAUACUUACUGUACUGCAG 21 3′ 15730
    BCL11A-13388 + AGAAAAUACUUACUGUACUGCAG 23 3′ 15731
    BCL11A-13389 + AAGAAAAUACUUACUGUACUGCAG 24 3′ 15732
    BCL11A-13390 AAGCAAAACUAGAAAGUUUUA 21 3′ 15733
    BCL11A-13391 UAAGCAAAACUAGAAAGUUUUA 22 3′ 15734
    BCL11A-13392 UUAAGCAAAACUAGAAAGUUUUA 23 3′ 15735
  • Table 22E provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the third tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 22E
    5th Tier
    Target SEQ
    DNA Site 5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13393 + AAAUUUAAGACGGGAAAA 18 5′ 15736
    BCL11A-13394 + AAAAUUUAAGACGGGAAAA 19 5′ 15737
    BCL11A-13395 + AAAAAUUUAAGACGGGAAAA 20 5′ 15738
    BCL11A-13396 + UAAAAAUUUAAGACGGGAAAA 21 5′ 15739
    BCL11A-13397 + AUAAAAAUUUAAGACGGGAAAA 22 5′ 15740
    BCL11A-13398 + CAUAAAAAUUUAAGACGGGAAAA 23 5′ 15741
    BCL11A-13399 + ACAUAAAAAUUUAAGACGGGAAAA 24 5′ 15742
    BCL11A-13400 + UCACAUAAAAAUUUAAGA 18 5′ 15743
    BCL11A-13401 + CUCACAUAAAAAUUUAAGA 19 5′ 15744
    BCL11A-13402 + UCUCACAUAAAAAUUUAAGA 20 5′ 15745
    BCL11A-13403 + AUCUCACAUAAAAAUUUAAGA 21 5′ 15746
    BCL11A-13404 + CAUCUCACAUAAAAAUUUAAGA 22 5′ 15747
    BCL11A-13405 + UCAUCUCACAUAAAAAUUUAAGA 23 5′ 15748
    BCL11A-13406 + CUCAUCUCACAUAAAAAUUUAAGA 24 5′ 15749
    BCL11A-13407 + AAUUUAAGACGGGAAAAC 18 5′ 15750
    BCL11A-13408 + AAAUUUAAGACGGGAAAAC 19 5′ 15751
    BCL11A-13409 + AAAAUUUAAGACGGGAAAAC 20 5′ 15752
    BCL11A-13410 + AAAAAUUUAAGACGGGAAAAC 21 5′ 15753
    BCL11A-13411 + UAAAAAUUUAAGACGGGAAAAC 22 5′ 15754
    BCL11A-13412 + AUAAAAAUUUAAGACGGGAAAAC 23 5′ 15755
    BCL11A-13413 + CAUAAAAAUUUAAGACGGGAAAAC 24 5′ 15756
    BCL11A-13414 + CACAUAAAAAUUUAAGAC 18 5′ 15757
    BCL11A-13415 + UCACAUAAAAAUUUAAGAC 19 5′ 15758
    BCL11A-13416 + CUCACAUAAAAAUUUAAGAC 20 5′ 15759
    BCL11A-13417 + UCUCACAUAAAAAUUUAAGAC 21 5′ 15760
    BCL11A-13418 + AUCUCACAUAAAAAUUUAAGAC 22 5′ 15761
    BCL11A-13419 + CAUCUCACAUAAAAAUUUAAGAC 23 5′ 15762
    BCL11A-13420 + UCAUCUCACAUAAAAAUUUAAGAC 24 5′ 15763
    BCL11A-13421 + CUCACAUAAAAAUUUAAG 18 5′ 15764
    BCL11A-13422 + UCUCACAUAAAAAUUUAAG 19 5′ 15765
    BCL11A-13423 + AUCUCACAUAAAAAUUUAAG 20 5′ 15766
    BCL11A-13424 + CAUCUCACAUAAAAAUUUAAG 21 5′ 15767
    BCL11A-13425 + UCAUCUCACAUAAAAAUUUAAG 22 5′ 15768
    BCL11A-13426 + CUCAUCUCACAUAAAAAUUUAAG 23 5′ 15769
    BCL11A-13427 + GCUCAUCUCACAUAAAAAUUUAAG 24 5′ 15770
    BCL11A-13428 + CAACUUGUGUUGCACUAG 18 5′ 15771
    BCL11A-13429 + ACAACUUGUGUUGCACUAG 19 5′ 15772
    BCL11A-13430 + CACAACUUGUGUUGCACUAG 20 5′ 15773
    BCL11A-13431 + ACACAACUUGUGUUGCACUAG 21 5′ 15774
    BCL11A-13432 + UACACAACUUGUGUUGCACUAG 22 5′ 15775
    BCL11A-13433 + CUACACAACUUGUGUUGCACUAG 23 5′ 15776
    BCL11A-13434 + UCUACACAACUUGUGUUGCACUAG 24 5′ 15777
    BCL11A-13435 + AACAGGAAGAUGCAUUCU 18 5′ 15778
    BCL11A-13436 + AAACAGGAAGAUGCAUUCU 19 5′ 15779
    BCL11A-13437 + AAAACAGGAAGAUGCAUUCU 20 5′ 15780
    BCL11A-13438 + GAAAACAGGAAGAUGCAUUCU 21 5′ 15781
    BCL11A-13439 + GGAAAACAGGAAGAUGCAUUCU 22 5′ 15782
    BCL11A-13440 + GGGAAAACAGGAAGAUGCAUUCU 23 5′ 15783
    BCL11A-13441 + CGGGAAAACAGGAAGAUGCAUUCU 24 5′ 15784
    BCL11A-13442 + UUAUUUUACUAGUGAAUU 18 5′ 15785
    BCL11A-13443 + AUUAUUUUACUAGUGAAUU 19 5′ 15786
    BCL11A-13444 + AAUUAUUUUACUAGUGAAUU 20 5′ 15787
    BCL11A-13445 + UAAUUAUUUUACUAGUGAAUU 21 5′ 15788
    BCL11A-13446 + CUAAUUAUUUUACUAGUGAAUU 22 5′ 15789
    BCL11A-13447 + UCUAAUUAUUUUACUAGUGAAUU 23 5′ 15790
    BCL11A-13448 + UUCUAAUUAUUUUACUAGUGAAUU 24 5′ 15791
    BCL11A-13449 + AAAACAGGAAGAUGCAUU 18 5′ 15792
    BCL11A-13450 + GAAAACAGGAAGAUGCAUU 19 5′ 15793
    BCL11A-13451 + GGAAAACAGGAAGAUGCAUU 20 5′ 15794
    BCL11A-13452 + GGGAAAACAGGAAGAUGCAUU 21 5′ 15795
    BCL11A-13453 + CGGGAAAACAGGAAGAUGCAUU 22 5′ 15796
    BCL11A-13454 + ACGGGAAAACAGGAAGAUGCAUU 23 5′ 15797
    BCL11A-13455 + GACGGGAAAACAGGAAGAUGCAUU 24 5′ 15798
    BCL11A-13456 UUGGAAUGUAGAGAGGCA 18 5′ 15799
    BCL11A-13457 UUUGGAAUGUAGAGAGGCA 19 5′ 15800
    BCL11A-13458 UUUUGGAAUGUAGAGAGGCA 20 5′ 15801
    BCL11A-13459 GUUUUGGAAUGUAGAGAGGCA 21 5′ 15802
    BCL11A-13460 UGUUUUGGAAUGUAGAGAGGCA 22 5′ 15803
    BCL11A-13461 CUGUUUUGGAAUGUAGAGAGGCA 23 5′ 15804
    BCL11A-13462 GCUGUUUUGGAAUGUAGAGAGGCA 24 5′ 15805
    BCL11A-13463 CAACACAAGUUGUGUAGA 18 5′ 15806
    BCL11A-13464 GCAACACAAGUUGUGUAGA 19 5′ 15807
    BCL11A-13465 UGCAACACAAGUUGUGUAGA 20 5′ 15808
    BCL11A-13466 GUGCAACACAAGUUGUGUAGA 21 5′ 15809
    BCL11A-13467 AGUGCAACACAAGUUGUGUAGA 22 5′ 15810
    BCL11A-13468 UAGUGCAACACAAGUUGUGUAGA 23 5′ 15811
    BCL11A-13469 CUAGUGCAACACAAGUUGUGUAGA 24 5′ 15812
    BCL11A-13470 AGGCUGUUUUGGAAUGUA 18 5′ 15813
    BCL11A-13471 AAGGCUGUUUUGGAAUGUA 19 5′ 15814
    BCL11A-13472 AAAGGCUGUUUUGGAAUGUA 20 5′ 15815
    BCL11A-13473 AAAAGGCUGUUUUGGAAUGUA 21 5′ 15816
    BCL11A-13474 UAAAAGGCUGUUUUGGAAUGUA 22 5′ 15817
    BCL11A-13475 AUAAAAGGCUGUUUUGGAAUGUA 23 5′ 15818
    BCL11A-13476 AAUAAAAGGCUGUUUUGGAAUGUA 24 5′ 15819
    BCL11A-13477 UGGAAUGUAGAGAGGCAG 18 5′ 15820
    BCL11A-13478 UUGGAAUGUAGAGAGGCAG 19 5′ 15821
    BCL11A-13479 UUUGGAAUGUAGAGAGGCAG 20 5′ 15822
    BCL11A-13480 UUUUGGAAUGUAGAGAGGCAG 21 5′ 15823
    BCL11A-13481 GUUUUGGAAUGUAGAGAGGCAG 22 5′ 15824
    BCL11A-13482 UGUUUUGGAAUGUAGAGAGGCAG 23 5′ 15825
    BCL11A-13483 CUGUUUUGGAAUGUAGAGAGGCAG 24 5′ 15826
    BCL11A-13484 CUUAAAUUUUUAUGUGAG 18 5′ 15827
    BCL11A-13485 UCUUAAAUUUUUAUGUGAG 19 5′ 15828
    BCL11A-13486 GUCUUAAAUUUUUAUGUGAG 20 5′ 15829
    BCL11A-13487 CGUCUUAAAUUUUUAUGUGAG 21 5′ 15830
    BCL11A-13488 CCGUCUUAAAUUUUUAUGUGAG 22 5′ 15831
    BCL11A-13489 CCCGUCUUAAAUUUUUAUGUGAG 23 5′ 15832
    BCL11A-13490 UCCCGUCUUAAAUUUUUAUGUGAG 24 5′ 15833
    BCL11A-13491 UAAGAAAGCAGUGUAAGG 18 5′ 15834
    BCL11A-13492 UUAAGAAAGCAGUGUAAGG 19 5′ 15835
    BCL11A-13493 AUUAAGAAAGCAGUGUAAGG 20 5′ 15836
    BCL11A-13494 AAUUAAGAAAGCAGUGUAAGG 21 5′ 15837
    BCL11A-13495 UAAUUAAGAAAGCAGUGUAAGG 22 5′ 15838
    BCL11A-13496 GUAAUUAAGAAAGCAGUGUAAGG 23 5′ 15839
    BCL11A-13497 UGUAAUUAAGAAAGCAGUGUAAGG 24 5′ 15840
    BCL11A-13498 UUUUGGAAUGUAGAGAGG 18 5′ 15841
    BCL11A-13499 GUUUUGGAAUGUAGAGAGG 19 5′ 15842
    BCL11A-13500 UGUUUUGGAAUGUAGAGAGG 20 5′ 15843
    BCL11A-13501 CUGUUUUGGAAUGUAGAGAGG 21 5′ 15844
    BCL11A-13502 GCUGUUUUGGAAUGUAGAGAGG 22 5′ 15845
    BCL11A-13503 GGCUGUUUUGGAAUGUAGAGAGG 23 5′ 15846
    BCL11A-13504 AGGCUGUUUUGGAAUGUAGAGAGG 24 5′ 15847
    BCL11A-13505 AAAGGCUGUUUUGGAAUG 18 5′ 15848
    BCL11A-13506 AAAAGGCUGUUUUGGAAUG 19 5′ 15849
    BCL11A-13507 UAAAAGGCUGUUUUGGAAUG 20 5′ 15850
    BCL11A-13508 AUAAAAGGCUGUUUUGGAAUG 21 5′ 15851
    BCL11A-13509 AAUAAAAGGCUGUUUUGGAAUG 22 5′ 15852
    BCL11A-13510 GAAUAAAAGGCUGUUUUGGAAUG 23 5′ 15853
    BCL11A-13511 AGAAUAAAAGGCUGUUUUGGAAUG 24 5′ 15854
    BCL11A-13512 AGUGCAACACAAGUUGUG 18 5′ 15855
    BCL11A-13513 UAGUGCAACACAAGUUGUG 19 5′ 15856
    BCL11A-13514 CUAGUGCAACACAAGUUGUG 20 5′ 15857
    BCL11A-13515 CCUAGUGCAACACAAGUUGUG 21 5′ 15858
    BCL11A-13516 ACCUAGUGCAACACAAGUUGUG 22 5′ 15859
    BCL11A-13517 CACCUAGUGCAACACAAGUUGUG 23 5′ 15860
    BCL11A-13518 UCACCUAGUGCAACACAAGUUGUG 24 5′ 15861
    BCL11A-13519 CCCGUCUUAAAUUUUUAU 18 5′ 15862
    BCL11A-13520 UCCCGUCUUAAAUUUUUAU 19 5′ 15863
    BCL11A-13521 UUCCCGUCUUAAAUUUUUAU 20 5′ 15864
    BCL11A-13522 UUUCCCGUCUUAAAUUUUUAU 21 5′ 15865
    BCL11A-13523 UUUUCCCGUCUUAAAUUUUUAU 22 5′ 15866
    BCL11A-13524 GUUUUCCCGUCUUAAAUUUUUAU 23 5′ 15867
    BCL11A-13525 UGUUUUCCCGUCUUAAAUUUUUAU 24 5′ 15868
    BCL11A-13526 GAGCACACUGCUGUAAUU 18 5′ 15869
    BCL11A-13527 UGAGCACACUGCUGUAAUU 19 5′ 15870
    BCL11A-13528 AUGAGCACACUGCUGUAAUU 20 5′ 15871
    BCL11A-13529 GAUGAGCACACUGCUGUAAUU 21 5′ 15872
    BCL11A-13530 AGAUGAGCACACUGCUGUAAUU 22 5′ 15873
    BCL11A-13531 GAGAUGAGCACACUGCUGUAAUU 23 5′ 15874
    BCL11A-13532 UGAGAUGAGCACACUGCUGUAAUU 24 5′ 15875
    BCL11A-13533 UUAGAAUAAAAGGCUGUU 18 5′ 15876
    BCL11A-13534 AUUAGAAUAAAAGGCUGUU 19 5′ 15877
    BCL11A-13535 AAUUAGAAUAAAAGGCUGUU 20 5′ 15878
    BCL11A-13536 UAAUUAGAAUAAAAGGCUGUU 21 5′ 15879
    BCL11A-13537 AUAAUUAGAAUAAAAGGCUGUU 22 5′ 15880
    BCL11A-13538 AAUAAUUAGAAUAAAAGGCUGUU 23 5′ 15881
    BCL11A-13539 AAAUAAUUAGAAUAAAAGGCUGUU 24 5′ 15882
    BCL11A-13540 + UUUCAUUUUUUGCUGACA 18 3′ 15883
    BCL11A-13541 + GUUUCAUUUUUUGCUGACA 19 3′ 15884
    BCL11A-13542 + UGUUUCAUUUUUUGCUGACA 20 3′ 15885
    BCL11A-13543 + UUGUUUCAUUUUUUGCUGACA 21 3′ 15886
    BCL11A-13544 + UUUGUUUCAUUUUUUGCUGACA 22 3′ 15887
    BCL11A-13545 + UUUUGUUUCAUUUUUUGCUGACA 23 3′ 15888
    BCL11A-13546 + UUUUUGUUUCAUUUUUUGCUGACA 24 3′ 15889
    BCL11A-13547 + AAUAGUUUGCUUCCCCCA 18 3′ 15890
    BCL11A-13548 + AAAUAGUUUGCUUCCCCCA 19 3′ 15891
    BCL11A-13549 + UAAAUAGUUUGCUUCCCCCA 20 3′ 15892
    BCL11A-13550 + GUAAAUAGUUUGCUUCCCCCA 21 3′ 15893
    BCL11A-13551 + UGUAAAUAGUUUGCUUCCCCCA 22 3′ 15894
    BCL11A-13552 + CUGUAAAUAGUUUGCUUCCCCCA 23 3′ 15895
    BCL11A-13553 + GCUGUAAAUAGUUUGCUUCCCCCA 24 3′ 15896
    BCL11A-13554 + AAUACUUACUGUACUGCA 18 3′ 15897
    BCL11A-13555 + AAAUACUUACUGUACUGCA 19 3′ 15898
    BCL11A-13556 + AAAAUACUUACUGUACUGCA 20 3′ 15899
    BCL11A-13557 + GAAAAUACUUACUGUACUGCA 21 3′ 15900
    BCL11A-13558 + AGAAAAUACUUACUGUACUGCA 22 3′ 15901
    BCL11A-13559 + AAGAAAAUACUUACUGUACUGCA 23 3′ 15902
    BCL11A-13560 + AAAGAAAAUACUUACUGUACUGCA 24 3′ 15903
    BCL11A-13561 + UGCUACUUAUACAAUUCA 18 3′ 15904
    BCL11A-13562 + GUGCUACUUAUACAAUUCA 19 3′ 15905
    BCL11A-13563 + AGUGCUACUUAUACAAUUCA 20 3′ 15906
    BCL11A-13564 + CAGUGCUACUUAUACAAUUCA 21 3′ 15907
    BCL11A-13565 + UCAGUGCUACUUAUACAAUUCA 22 3′ 15908
    BCL11A-13566 + CUCAGUGCUACUUAUACAAUUCA 23 3′ 15909
    BCL11A-13567 + ACUCAGUGCUACUUAUACAAUUCA 24 3′ 15910
    BCL11A-13568 + GUUUGCUUCCCCCAAUGA 18 3′ 15911
    BCL11A-13569 + AGUUUGCUUCCCCCAAUGA 19 3′ 15912
    BCL11A-13570 + UAGUUUGCUUCCCCCAAUGA 20 3′ 15913
    BCL11A-13571 + AUAGUUUGCUUCCCCCAAUGA 21 3′ 15914
    BCL11A-13572 + AAUAGUUUGCUUCCCCCAAUGA 22 3′ 15915
    BCL11A-13573 + AAAUAGUUUGCUUCCCCCAAUGA 23 3′ 15916
    BCL11A-13574 + UAAAUAGUUUGCUUCCCCCAAUGA 24 3′ 15917
    BCL11A-13575 + UUUCUAGUUUUGCUUAAC 18 3′ 15918
    BCL11A-13576 + CUUUCUAGUUUUGCUUAAC 19 3′ 15919
    BCL11A-13577 + ACUUUCUAGUUUUGCUUAAC 20 3′ 15920
    BCL11A-13578 + AACUUUCUAGUUUUGCUUAAC 21 3′ 15921
    BCL11A-13579 + AAACUUUCUAGUUUUGCUUAAC 22 3′ 15922
    BCL11A-13580 + AAAACUUUCUAGUUUUGCUUAAC 23 3′ 15923
    BCL11A-13581 + UAAAACUUUCUAGUUUUGCUUAAC 24 3′ 15924
    BCL11A-13582 + GCUACUUAUACAAUUCAC 18 3′ 15925
    BCL11A-13583 + UGCUACUUAUACAAUUCAC 19 3′ 15926
    BCL11A-13584 + GUGCUACUUAUACAAUUCAC 20 3′ 15927
    BCL11A-13585 + AGUGCUACUUAUACAAUUCAC 21 3′ 15928
    BCL11A-13586 + CAGUGCUACUUAUACAAUUCAC 22 3′ 15929
    BCL11A-13587 + UCAGUGCUACUUAUACAAUUCAC 23 3′ 15930
    BCL11A-13588 + CUCAGUGCUACUUAUACAAUUCAC 24 3′ 15931
    BCL11A-13589 + AAAUACUUACUGUACUGC 18 3′ 15932
    BCL11A-13590 + AAAAUACUUACUGUACUGC 19 3′ 15933
    BCL11A-13591 + GAAAAUACUUACUGUACUGC 20 3′ 15934
    BCL11A-13592 + AGAAAAUACUUACUGUACUGC 21 3′ 15935
    BCL11A-13593 + AAGAAAAUACUUACUGUACUGC 22 3′ 15936
    BCL11A-13594 + AAAGAAAAUACUUACUGUACUGC 23 3′ 15937
    BCL11A-13595 + GAAAGAAAAUACUUACUGUACUGC 24 3′ 15938
    BCL11A-13596 + AAAAUACUUACUGUACUG 18 3′ 15939
    BCL11A-13597 + GAAAAUACUUACUGUACUG 19 3′ 15940
    BCL11A-13598 + AGAAAAUACUUACUGUACUG 20 3′ 15941
    BCL11A-13599 + AAGAAAAUACUUACUGUACUG 21 3′ 15942
    BCL11A-13600 + AAAGAAAAUACUUACUGUACUG 22 3′ 15943
    BCL11A-13601 + GAAAGAAAAUACUUACUGUACUG 23 3′ 15944
    BCL11A-13602 + UGAAAGAAAAUACUUACUGUACUG 24 3′ 15945
    BCL11A-13603 GUUCUGUGUCAGCAAAAA 18 3′ 15946
    BCL11A-13604 AGUUCUGUGUCAGCAAAAA 19 3′ 15947
    BCL11A-13605 GAGUUCUGUGUCAGCAAAAA 20 3′ 15948
    BCL11A-13606 UGAGUUCUGUGUCAGCAAAAA 21 3′ 15949
    BCL11A-13607 CUGAGUUCUGUGUCAGCAAAAA 22 3′ 15950
    BCL11A-13608 ACUGAGUUCUGUGUCAGCAAAAA 23 3′ 15951
    BCL11A-13609 CACUGAGUUCUGUGUCAGCAAAAA 24 3′ 15952
    BCL11A-13610 AGUAAGUAUUUUCUUUCA 18 3′ 15953
    BCL11A-13611 CAGUAAGUAUUUUCUUUCA 19 3′ 15954
    BCL11A-13612 ACAGUAAGUAUUUUCUUUCA 20 3′ 15955
    BCL11A-13613 UACAGUAAGUAUUUUCUUUCA 21 3′ 15956
    BCL11A-13614 GUACAGUAAGUAUUUUCUUUCA 22 3′ 15957
    BCL11A-13615 AGUACAGUAAGUAUUUUCUUUCA 23 3′ 15958
    BCL11A-13616 CAGUACAGUAAGUAUUUUCUUUCA 24 3′ 15959
    BCL11A-13617 UUUCAUGUUAAGCAAAAC 18 3′ 15960
    BCL11A-13618 UUUUCAUGUUAAGCAAAAC 19 3′ 15961
    BCL11A-13619 AUUUUCAUGUUAAGCAAAAC 20 3′ 15962
    BCL11A-13620 UAUUUUCAUGUUAAGCAAAAC 21 3′ 15963
    BCL11A-13621 UUAUUUUCAUGUUAAGCAAAAC 22 3′ 15964
    BCL11A-13622 AUUAUUUUCAUGUUAAGCAAAAC 23 3′ 15965
    BCL11A-13623 UAUUAUUUUCAUGUUAAGCAAAAC 24 3′ 15966
    BCL11A-13624 AGUAUUUUCUUUCAUUGG 18 3′ 15967
    BCL11A-13625 AAGUAUUUUCUUUCAUUGG 19 3′ 15968
    BCL11A-13626 UAAGUAUUUUCUUUCAUUGG 20 3′ 15969
    BCL11A-13627 GUAAGUAUUUUCUUUCAUUGG 21 3′ 15970
    BCL11A-13628 AGUAAGUAUUUUCUUUCAUUGG 22 3′ 15971
    BCL11A-13629 CAGUAAGUAUUUUCUUUCAUUGG 23 3′ 15972
    BCL11A-13630 ACAGUAAGUAUUUUCUUUCAUUGG 24 3′ 15973
    BCL11A-13631 AAGUAUUUUCUUUCAUUG 18 3′ 15974
    BCL11A-13632 UAAGUAUUUUCUUUCAUUG 19 3′ 15975
    BCL11A-13633 GUAAGUAUUUUCUUUCAUUG 20 3′ 15976
    BCL11A-13634 AGUAAGUAUUUUCUUUCAUUG 21 3′ 15977
    BCL11A-13635 CAGUAAGUAUUUUCUUUCAUUG 22 3′ 15978
    BCL11A-13636 ACAGUAAGUAUUUUCUUUCAUUG 23 3′ 15979
    BCL11A-13637 UACAGUAAGUAUUUUCUUUCAUUG 24 3′ 15980
    BCL11A-13638 GUAAGUAUUUUCUUUCAU 18 3′ 15981
    BCL11A-13639 AGUAAGUAUUUUCUUUCAU 19 3′ 15982
    BCL11A-13640 CAGUAAGUAUUUUCUUUCAU 20 3′ 15983
    BCL11A-13641 ACAGUAAGUAUUUUCUUUCAU 21 3′ 15984
    BCL11A-13642 UACAGUAAGUAUUUUCUUUCAU 22 3′ 15985
    BCL11A-13643 GUACAGUAAGUAUUUUCUUUCAU 23 3′ 15986
    BCL11A-13644 AGUACAGUAAGUAUUUUCUUUCAU 24 3′ 15987
    BCL11A-13645 UUGGCUAUUGAUACUGAU 18 3′ 15988
    BCL11A-13646 UUUGGCUAUUGAUACUGAU 19 3′ 15989
    BCL11A-13647 CUUUGGCUAUUGAUACUGAU 20 3′ 15990
    BCL11A-13648 UCUUUGGCUAUUGAUACUGAU 21 3′ 15991
    BCL11A-13649 AUCUUUGGCUAUUGAUACUGAU 22 3′ 15992
    BCL11A-13650 GAUCUUUGGCUAUUGAUACUGAU 23 3′ 15993
    BCL11A-13651 GGAUCUUUGGCUAUUGAUACUGAU 24 3′ 15994
    BCL11A-13652 UAAGUAUUUUCUUUCAUU 18 3′ 15995
    BCL11A-13653 GUAAGUAUUUUCUUUCAUU 19 3′ 15996
    BCL11A-13654 AGUAAGUAUUUUCUUUCAUU 20 3′ 15997
    BCL11A-13655 CAGUAAGUAUUUUCUUUCAUU 21 3′ 15998
    BCL11A-13656 ACAGUAAGUAUUUUCUUUCAUU 22 3′ 15999
    BCL11A-13657 UACAGUAAGUAUUUUCUUUCAUU 23 3′ 16000
    BCL11A-13658 GUACAGUAAGUAUUUUCUUUCAUU 24 3′ 16001
  • Table 23A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the first tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS), have a high level of orthogonality, and start with 5′G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 23A
    1st Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13659 GGAUCUUUGGCUAUUGA 17 3′ 16002
  • Table 23B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 23B
    2nd Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13660 + UCGGUAAAACUUUCUAG 17 3′ 16003
    BCL11A-13661 UUUGGAUCUUUGGCUAUUGA 20 3′ 16004
    BCL11A-13662 + CCCUGUUAUGGCUGUAAAUA 20 3′ 16005
    BCL11A-13663 + AAUUCGGUAAAACUUUCUAG 20 3′ 16006
  • Table 23C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCL11A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5′ (51.5 to 51.7 kb downstream of TSS) or 3′ (65.1 to 65.3 kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
  • TABLE 23C
    4th Tier
    Target SEQ
    DNA Site
    5′ ID
    gRNA Name Strand Targeting Domain Length or 3′ NO:
    BCL11A-13664 + CACUGCGCCCAGCCUUA 17 5′ 16007
    BCL11A-13665 + AGCCACUGCGCCCAGCCUUA 20 5′ 16008
    BCL11A-13666 + UGUUAUGGCUGUAAAUA 17 3′ 16009
  • Table 24A provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and have a high level of orthogonality. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 24A
    1st Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-19 + GUUCACCUUGCCCCACA 17 16010
    HBB-5 + AGGAGUCAGGUGCACCA 17 16011
    HBB-40 UACUGCCCUGUGGGGCA 17 16012
    HBB-70 GCUGGGCAUAAAAGUCA 17 16013
    HBB-71 GUUACAAGACAGGUUUA 17 16014
    HBB-72 AGGAGACCAAUAGAAAC 17 16015
    HBB-37 + CGUUCACCUUGCCCCAC 17 16016
    HBB-3 + ACGGCAGACUUCUCCAC 17 16017
    HBB-41 UAUCAAGGUUACAAGAC 17 16018
    HBB-73 + ACUUUUAUGCCCAGCCC 17 16019
    HBB-74 GGCUGGGCAUAAAAGUC 17 16020
    HBB-4 + ACUUCUCCACAGGAGUC 17 16021
    HBB-75 AAUAGAAACUGGGCAUG 17 16022
    HBB-38 CUGCCGUUACUGCCCUG 17 16023
    HBB-13 GGAUGAAGUUGGUGGUG 17 16024
    HBB-12 GCCGUUACUGCCCUGUG 17 16025
    HBB-76 + ACAUGCCCAGUUUCUAU 17 16026
    HBB-77 GGAGACCAAUAGAAACU 17 16027
    HBB-15 GUGAACGUGGAUGAAGU 17 16028
    HBB-47 UGCCGUUACUGCCCUGU 17 16029
    HBB-39 + CUUGCCCCACAGGGCAGUAA 20 16030
    HBB-30 + CACGUUCACCUUGCCCCACA 20 16031
    HBB-7 + CACAGGAGUCAGGUGCACCA 20 16032
    HBB-78 AGCAGGGAGGGCAGGAGCCA 20 16033
    HBB-36 CGUUACUGCCCUGUGGGGCA 20 16034
    HBB-79 AGGGCUGGGCAUAAAAGUCA 20 16035
    HBB-22 + AAGCAAAUGUAAGCAAUAGA 20 16036
    HBB-80 AAGGUUACAAGACAGGUUUA 20 16037
    HBB-81 UUAAGGAGACCAAUAGAAAC 20 16038
    HBB-2 + GUAACGGCAGACUUCUCCAC 20 16039
    HBB-49 UGGUAUCAAGGUUACAAGAC 20 16040
    HBB-82 + CUGACUUUUAUGCCCAGCCC 20 16041
    HBB-43 UGAAGUUGGUGGUGAGGCCC 20 16042
    HBB-83 GAGCAGGGAGGGCAGGAGCC 20 16043
    HBB-84 CAGGGCUGGGCAUAAAAGUC 20 16044
    HBB-8 + CAGACUUCUCCACAGGAGUC 20 16045
    HBB-16 GUGAACGUGGAUGAAGUUGG 20 16046
    HBB-85 ACCAAUAGAAACUGGGCAUG 20 16047
    HBB-27 AGUCUGCCGUUACUGCCCUG 20 16048
    HBB-35 CGUGGAUGAAGUUGGUGGUG 20 16049
    HBB-42 UCUGCCGUUACUGCCCUGUG 20 16050
    HBB-86 UAAGGAGACCAAUAGAAACU 20 16051
    HBB-9 GAAGUUGGUGGUGAGGCCCU 20 16052
    HBB-87 GGAGGGCAGGAGCCAGGGCU 20 16053
    HBB-23 AAGGUGAACGUGGAUGAAGU 20 16054
    HBB-14 GUCUGCCGUUACUGCCCUGU 20 16055
  • Table 24B provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the second tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and start with a 5′G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 24B
    2nd Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-11 + GCCCCACAGGGCAGUAA 17 16056
    HBB-18 GUGGUGAGGCCCUGGGC 17 16057
    HBB-17 GUGGGGCAAGGUGAACG 17 16058
    HBB-1 GGUGCACCUGACUCCUG 17 16059
    HBB-20 GUUGGUGGUGAGGCCCU 17 16060
    HBB-88 GGGCAGGAGCCAGGGCU 17 16061
    HBB-10 GCAACCUCAAACAGACACCA 20 16062
    HBB-89 GGGAGGGCAGGAGCCAGGGC 20 16063
  • Table 24C provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the third tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V). It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 24C
    3rd Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-25 ACCUCAAACAGACACCA 17 16064
    HBB-45 + UGAUACCAACCUGCCCA 17 16065
    HBB-90 AGGGAGGGCAGGAGCCA 17 16066
    HBB-48 UGGGCAGGUUGGUAUCA 17 16067
    HBB-29 + CAAAUGUAAGCAAUAGA 17 16068
    HBB-28 AGUUGGUGGUGAGGCCC 17 16069
    HBB-51 + UUGAUACCAACCUGCCC 17 16070
    HBB-91 CAGGGAGGGCAGGAGCC 17 16071
    HBB-92 AGGGCAGGAGCCAGGGC 17 16072
    HBB-21 AACGUGGAUGAAGUUGG 17 16073
    HBB-24 + ACCAUGGUGUCUGUUUG 17 16074
    HBB-44 UGAGGCCCUGGGCAGGU 17 16075
    HBB-34 + CCUUGAUACCAACCUGCCCA 20 16076
    HBB-32 CCCUGGGCAGGUUGGUAUCA 20 16077
    HBB-31 + CCACGUUCACCUUGCCCCAC 20 16078
    HBB-26 + ACCUUGAUACCAACCUGCCC 20 16079
    HBB-52 UUGGUGGUGAGGCCCUGGGC 20 16080
    HBB-33 CCUGUGGGGCAAGGUGAACG 20 16081
    HBB-6 CAUGGUGCACCUGACUCCUG 20 16082
    HBB-46 + UGCACCAUGGUGUCUGUUUG 20 16083
    HBB-50 UGGUGAGGCCCUGGGCAGGU 20 16084
  • Table 24D provides targeting domains for correcting a mutation (e.g., E6V) in the HBB gene by dual targeting (e.g., dual single strand cleavages). In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5′ ends of the gRNAs is 0-50 bp. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B in Table 24D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B in Table 24D (for S. pyogenes). For example, HBB-9 or HBB-20 can be combined with HBB-11 or HBB-39.
  • TABLE 24D
    Group A Group B
    HBB-9, HBB-20 HBB-11, HBB-39
  • Table 25A provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V), and have a high level of orthogonality. The PAM is NNGRRT. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 25A
    1st Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-93 + AACGGCAGACUUCUCCAC 18 16085
    HBB-94 + UAACGGCAGACUUCUCCAC 19 16086
    HBB-2 + GUAACGGCAGACUUCUCCAC 20 16087
    HBB-95 + AGUAACGGCAGACUUCUCCAC 21 16088
    HBB-96 + CAGUAACGGCAGACUUCUCCAC 22 16089
    HBB-97 + GCAGUAACGGCAGACUUCUCCAC 23 16090
    HBB-98 + GGCAGUAACGGCAGACUUCUCCAC 24 16091
    HBB-99 CUGUGGGGCAAGGUGAAC 18 16092
    HBB-100 CCUGUGGGGCAAGGUGAAC 19 16093
    HBB-101 CCCUGUGGGGCAAGGUGAAC 20 16094
    HBB-102 GCCCUGUGGGGCAAGGUGAAC 21 16095
    HBB-103 UGCCCUGUGGGGCAAGGUGAAC 22 16096
    HBB-104 CUGCCCUGUGGGGCAAGGUGAAC 23 16097
    HBB-105 ACUGCCCUGUGGGGCAAGGUGAAC 24 16098
  • Table 25B provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V), and the PAM is NNGRRV. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 25B
    4th Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-106 + CACGUUCACCUUGCCCCA 18 16099
    HBB-107 + CCACGUUCACCUUGCCCCA 19 16100
    HBB-58 + UCCACGUUCACCUUGCCCCA 20 16101
    HBB-108 + AUCCACGUUCACCUUGCCCCA 21 16102
    HBB-109 + CAUCCACGUUCACCUUGCCCCA 22 16103
    HBB-110 + UCAUCCACGUUCACCUUGCCCCA 23 16104
    HBB-111 + UUCAUCCACGUUCACCUUGCCCCA 24 16105
    HBB-112 + UAACGGCAGACUUCUCCA 18 16106
    HBB-113 + GUAACGGCAGACUUCUCCA 19 16107
    HBB-69 + AGUAACGGCAGACUUCUCCA 20 16108
    HBB-114 + CAGUAACGGCAGACUUCUCCA 21 16109
    HBB-115 + GCAGUAACGGCAGACUUCUCCA 22 16110
    HBB-116 + GGCAGUAACGGCAGACUUCUCCA 23 16111
    HBB-117 + GGGCAGUAACGGCAGACUUCUCCA 24 16112
    HBB-118 + GUCUGUUUGAGGUUGCUA 18 16113
    HBB-119 + UGUCUGUUUGAGGUUGCUA 19 16114
    HBB-66 + GUGUCUGUUUGAGGUUGCUA 20 16115
    HBB-120 + GGUGUCUGUUUGAGGUUGCUA 21 16116
    HBB-121 + UGGUGUCUGUUUGAGGUUGCUA 22 16117
    HBB-122 + AUGGUGUCUGUUUGAGGUUGCUA 23 16118
    HBB-123 + CAUGGUGUCUGUUUGAGGUUGCUA 24 16119
    HBB-124 + CCUUGAUACCAACCUGCC 18 16120
    HBB-125 + ACCUUGAUACCAACCUGCC 19 16121
    HBB-57 + AACCUUGAUACCAACCUGCC 20 16122
    HBB-126 + UAACCUUGAUACCAACCUGCC 21 16123
    HBB-127 + GUAACCUUGAUACCAACCUGCC 22 16124
    HBB-128 + UGUAACCUUGAUACCAACCUGCC 23 16125
    HBB-129 + UUGUAACCUUGAUACCAACCUGCC 24 16126
    HBB-130 + GUGCACCAUGGUGUCUGU 18 16127
    HBB-131 + GGUGCACCAUGGUGUCUGU 19 16128
    HBB-62 + AGGUGCACCAUGGUGUCUGU 20 16129
    HBB-132 + CAGGUGCACCAUGGUGUCUGU 21 16130
    HBB-133 + UCAGGUGCACCAUGGUGUCUGU 22 16131
    HBB-134 + GUCAGGUGCACCAUGGUGUCUGU 23 16132
    HBB-135 + AGUCAGGUGCACCAUGGUGUCUGU 24 16133
    HBB-136 + UAGUGAACACAGUUGUGU 18 16134
    HBB-137 + CUAGUGAACACAGUUGUGU 19 16135
    HBB-59 + GCUAGUGAACACAGUUGUGU 20 16136
    HBB-138 + UGCUAGUGAACACAGUUGUGU 21 16137
    HBB-139 + UUGCUAGUGAACACAGUUGUGU 22 16138
    HBB-140 + GUUGCUAGUGAACACAGUUGUGU 23 16139
    HBB-141 + GGUUGCUAGUGAACACAGUUGUGU 24 16140
    HBB-142 UAAGGAGACCAAUAGAAA 18 16141
    HBB-143 UUAAGGAGACCAAUAGAAA 19 16142
    HBB-144 UUUAAGGAGACCAAUAGAAA 20 16143
    HBB-145 GUUUAAGGAGACCAAUAGAAA 21 16144
    HBB-146 GGUUUAAGGAGACCAAUAGAAA 22 16145
    HBB-147 AGGUUUAAGGAGACCAAUAGAAA 23 16146
    HBB-148 CAGGUUUAAGGAGACCAAUAGAAA 24 16147
    HBB-149 CAGGUUUAAGGAGACCAA 18 16148
    HBB-150 ACAGGUUUAAGGAGACCAA 19 16149
    HBB-151 GACAGGUUUAAGGAGACCAA 20 16150
    HBB-152 AGACAGGUUUAAGGAGACCAA 21 16151
    HBB-153 AAGACAGGUUUAAGGAGACCAA 22 16152
    HBB-154 CAAGACAGGUUUAAGGAGACCAA 23 16153
    HBB-155 ACAAGACAGGUUUAAGGAGACCAA 24 16154
    HBB-156 GGUUACAAGACAGGUUUA 18 16155
    HBB-157 AGGUUACAAGACAGGUUUA 19 16156
    HBB-80 AAGGUUACAAGACAGGUUUA 20 16157
    HBB-158 CAAGGUUACAAGACAGGUUUA 21 16158
    HBB-159 UCAAGGUUACAAGACAGGUUUA 22 16159
    HBB-160 AUCAAGGUUACAAGACAGGUUUA 23 16160
    HBB-161 UAUCAAGGUUACAAGACAGGUUUA 24 16161
    HBB-162 GAAGUUGGUGGUGAGGCC 18 16162
    HBB-163 UGAAGUUGGUGGUGAGGCC 19 16163
    HBB-68 AUGAAGUUGGUGGUGAGGCC 20 16164
    HBB-164 GAUGAAGUUGGUGGUGAGGCC 21 16165
    HBB-165 GGAUGAAGUUGGUGGUGAGGCC 22 16166
    HBB-166 UGGAUGAAGUUGGUGGUGAGGCC 23 16167
    HBB-167 GUGGAUGAAGUUGGUGGUGAGGCC 24 16168
    HBB-168 ACUGCCCUGUGGGGCAAG 18 16169
    HBB-169 UACUGCCCUGUGGGGCAAG 19 16170
    HBB-65 UUACUGCCCUGUGGGGCAAG 20 16171
    HBB-170 GUUACUGCCCUGUGGGGCAAG 21 16172
    HBB-171 CGUUACUGCCCUGUGGGGCAAG 22 16173
    HBB-172 CCGUUACUGCCCUGUGGGGCAAG 23 16174
    HBB-173 GCCGUUACUGCCCUGUGGGGCAAG 24 16175
    HBB-174 GGAGGGCAGGAGCCAGGG 18 16176
    HBB-175 GGGAGGGCAGGAGCCAGGG 19 16177
    HBB-176 AGGGAGGGCAGGAGCCAGGG 20 16178
    HBB-177 CAGGGAGGGCAGGAGCCAGGG 21 16179
    HBB-178 GCAGGGAGGGCAGGAGCCAGGG 22 16180
    HBB-179 AGCAGGGAGGGCAGGAGCCAGGG 23 16181
    HBB-180 GAGCAGGGAGGGCAGGAGCCAGGG 24 16182
    HBB-181 UGGGCAUAAAAGUCAGGG 18 16183
    HBB-182 CUGGGCAUAAAAGUCAGGG 19 16184
    HBB-183 GCUGGGCAUAAAAGUCAGGG 20 16185
    HBB-184 GGCUGGGCAUAAAAGUCAGGG 21 16186
    HBB-185 GGGCUGGGCAUAAAAGUCAGGG 22 16187
    HBB-186 AGGGCUGGGCAUAAAAGUCAGGG 23 16188
    HBB-187 CAGGGCUGGGCAUAAAAGUCAGGG 24 16189
    HBB-188 GGGGCAAGGUGAACGUGG 18 16190
    HBB-189 UGGGGCAAGGUGAACGUGG 19 16191
    HBB-67 GUGGGGCAAGGUGAACGUGG 20 16192
    HBB-190 UGUGGGGCAAGGUGAACGUGG 21 16193
    HBB-191 CUGUGGGGCAAGGUGAACGUGG 22 16194
    HBB-192 CCUGUGGGGCAAGGUGAACGUGG 23 16195
    HBB-193 CCCUGUGGGGCAAGGUGAACGUGG 24 16196
    HBB-194 UCUGCCGUUACUGCCCUG 18 16197
    HBB-195 GUCUGCCGUUACUGCCCUG 19 16198
    HBB-27 AGUCUGCCGUUACUGCCCUG 20 16199
    HBB-196 AAGUCUGCCGUUACUGCCCUG 21 16200
    HBB-197 GAAGUCUGCCGUUACUGCCCUG 22 16201
    HBB-198 AGAAGUCUGCCGUUACUGCCCUG 23 16202
    HBB-199 GAGAAGUCUGCCGUUACUGCCCUG 24 16203
    HBB-200 UGGUGCACCUGACUCCUG 18 16204
    HBB-201 AUGGUGCACCUGACUCCUG 19 16205
    HBB-6 CAUGGUGCACCUGACUCCUG 20 16206
    HBB-202 CCAUGGUGCACCUGACUCCUG 21 16207
    HBB-203 ACCAUGGUGCACCUGACUCCUG 22 16208
    HBB-204 CACCAUGGUGCACCUGACUCCUG 23 16209
    HBB-205 ACACCAUGGUGCACCUGACUCCUG 24 16210
    HBB-206 ACGUGGAUGAAGUUGGUG 18 16211
    HBB-207 AACGUGGAUGAAGUUGGUG 19 16212
    HBB-64 GAACGUGGAUGAAGUUGGUG 20 16213
    HBB-208 UGAACGUGGAUGAAGUUGGUG 21 16214
    HBB-209 GUGAACGUGGAUGAAGUUGGUG 22 16215
    HBB-210 GGUGAACGUGGAUGAAGUUGGUG 23 16216
    HBB-211 AGGUGAACGUGGAUGAAGUUGGUG 24 16217
    HBB-212 GUGCACCUGACUCCUGUG 18 16218
    HBB-213 GGUGCACCUGACUCCUGUG 19 16219
    HBB-63 UGGUGCACCUGACUCCUGUG 20 16220
    HBB-214 AUGGUGCACCUGACUCCUGUG 21 16221
    HBB-215 CAUGGUGCACCUGACUCCUGUG 22 16222
    HBB-216 CCAUGGUGCACCUGACUCCUGUG 23 16223
    HBB-217 ACCAUGGUGCACCUGACUCCUGUG 24 16224
    HBB-218 GUCUGCCGUUACUGCCCU 18 16225
    HBB-219 AGUCUGCCGUUACUGCCCU 19 16226
    HBB-56 AAGUCUGCCGUUACUGCCCU 20 16227
    HBB-220 GAAGUCUGCCGUUACUGCCCU 21 16228
    HBB-221 AGAAGUCUGCCGUUACUGCCCU 22 16229
    HBB-222 GAGAAGUCUGCCGUUACUGCCCU 23 16230
    HBB-223 GGAGAAGUCUGCCGUUACUGCCCU 24 16231
    HBB-224 AUGGUGCACCUGACUCCU 18 16232
    HBB-225 CAUGGUGCACCUGACUCCU 19 16233
    HBB-60 CCAUGGUGCACCUGACUCCU 20 16234
    HBB-226 ACCAUGGUGCACCUGACUCCU 21 16235
    HBB-227 CACCAUGGUGCACCUGACUCCU 22 16236
    HBB-228 ACACCAUGGUGCACCUGACUCCU 23 16237
    HBB-229 GACACCAUGGUGCACCUGACUCCU 24 16238
    HBB-230 AGGGCUGGGCAUAAAAGU 18 16239
    HBB-231 CAGGGCUGGGCAUAAAAGU 19 16240
    HBB-232 CCAGGGCUGGGCAUAAAAGU 20 16241
    HBB-233 GCCAGGGCUGGGCAUAAAAGU 21 16242
    HBB-234 AGCCAGGGCUGGGCAUAAAAGU 22 16243
    HBB-235 GAGCCAGGGCUGGGCAUAAAAGU 23 16244
    HBB-236 GGAGCCAGGGCUGGGCAUAAAAGU 24 16245
    HBB-237 AGGUUACAAGACAGGUUU 18 16246
    HBB-238 AAGGUUACAAGACAGGUUU 19 16247
    HBB-239 CAAGGUUACAAGACAGGUUU 20 16248
    HBB-240 UCAAGGUUACAAGACAGGUUU 21 16249
    HBB-241 AUCAAGGUUACAAGACAGGUUU 22 16250
    HBB-242 UAUCAAGGUUACAAGACAGGUUU 23 16251
    HBB-243 GUAUCAAGGUUACAAGACAGGUUU 24 16252
  • Table 26 provides exemplary targeting domains for correcting a mutation (e.g., E6V) in the HBB gene selected according to the first tier parameters. The targeting domains bind within 200 bp to a mutation (e.g., E6V) and have a high level of orthogonality. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
  • TABLE 26
    1st Tier
    Target SEQ
    gRNA DNA Site ID
    Name Strand Targeting Domain Length NO:
    HBB-244 AGCCAUCUAUUGCUUAC 17 16253
    HBB-245 GUCAGGGCAGAGCCAUC 17 16254
    HBB-246 CAGAGCCAUCUAUUGCUUAC 20 16255
    HBB-247 AAAGUCAGGGCAGAGCCAUC 20 16256
  • III. Cas9 Molecules
  • Cas9 molecules of a variety of species can be used in the methods and compositions described herein. While the S. pyogenes, S. aureus, and S. thermophilus Cas9 molecules are the subject of much of the disclosure herein, Cas9 molecules of, derived from, or based on the Cas9 proteins of other species listed herein can be used as well. In other words, while the much of the description herein uses S. pyogenes and S. thermophilus Cas9 molecules, Cas9 molecules from the other species can replace them, e.g., Staphylococcus aureus and Neisseria meningitidis Cas9 molecules. Additional Cas9 species include: Acidovorax avenae, Actinobacillus pleuropneumoniae, Actinobacillus succinogenes, Actinobacillus suis, Actinomyces sp., Cycliphilus denitrificans, Aminomonas paucivorans, Bacillus cereus, Bacillus smithii, Bacillus thuringiensis, Bacteroides sp., Blastopirellula marina, Bradyrhizobium sp., Brevibacillus laterosporus, Campylobacter coli, Campylobacter jejuni, Campylobacter lari, Candidatus puniceispirillum, Clostridium cellulolyticum, Clostridium perfringens, Corynebacterium accolens, Corynebacterium diphtheria, Corynebacterium matruchotii, Dinoroseobacter shibae, Eubacterium dolichum, gamma proteobacterium, Gluconacetobacter diazotrophicus, Haemophilus parainfluenzae, Haemophilus sputorum, Helicobacter canadensis, Helicobacter cinaedi, Helicobacter mustelae, Ilyobacter polytropus, Kingella kingae, Lactobacillus crispatus, Listeria ivanovii, Listeria monocytogenes, Listeriaceae bacterium, Methylocystis sp., Methylosinus trichosporium, Mobiluncus mulieris, Neisseria bacilliformis, Neisseria cinerea, Neisseria flavescens, Neisseria lactamica, Neisseria sp., Neisseria wadsworthii, Nitrosomonas sp., Parvibaculum lavamentivorans, Pasteurella multocida, Phascolarctobacterium succinatutens, Ralstonia syzygii, Rhodopseudomonas palustris, Rhodovulum sp., Simonsiella muelleri, Sphingomonas sp., Sporolactobacillus vineae, Staphylococcus lugdunensis, Streptococcus sp., Subdoligranulum sp., Tistrella mobilis, Treponema sp., or Verminephrobacter eiseniae.
  • A Cas9 molecule, or Cas9 polypeptide, as that term is used herein, refers to a molecule or a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence. Cas9 molecule and Cas9 polypeptide, as those terms are used herein, refer to naturally occurring Cas9 molecules and to engineered, altered, or modified Cas9 molecules or Cas9 polypeptides that differ, e.g., by at least one amino acid residue, from a reference sequence, e.g., the most similar naturally occurring Cas9 molecule or a sequence of Table 28.
  • Cas9 Domains
  • Crystal structures have been determined for two different naturally occurring bacterial Cas9 molecules (Jinek et al., Science, 343(6176):1247997, 2014) and for S. pyogenes Cas9 with a guide RNA (e.g., a synthetic fusion of crRNA and tracrRNA) (Nishimasu et al., Cell, 156:935-949, 2014; and Anders et al., Nature, 2014, doi: 10.1038/nature13579).
  • A naturally occurring Cas9 molecule comprises two lobes: a recognition (REC) lobe and a nuclease (NUC) lobe; each of which further comprise domains described herein. FIGS. 9A-9B provide a schematic of the organization of important Cas9 domains in the primary structure. The domain nomenclature and the numbering of the amino acid residues encompassed by each domain used throughout this disclosure is as described in Nishimasu et al. The numbering of the amino acid residues is with reference to Cas9 from S. pyogenes.
  • The REC lobe comprises the arginine-rich bridge helix (BH), the REC1 domain, and the REC2 domain. The REC lobe does not share structural similarity with other known proteins, indicating that it is a Cas9-specific functional domain. The BH domain is a long c helix and arginine rich region and comprises amino acids 60-93 of the sequence of S. pyogenes Cas9. The REC1 domain is important for recognition of the repeat:anti-repeat duplex, e.g., of a gRNA or a tracrRNA, and is therefore critical for Cas9 activity by recognizing the target sequence. The REC1 domain comprises two REC1 motifs at amino acids 94 to 179 and 308 to 717 of the sequence of S. pyogenes Cas9. These two REC1 domains, though separated by the REC2 domain in the linear primary structure, assemble in the tertiary structure to form the REC1 domain. The REC2 domain, or parts thereof, may also play a role in the recognition of the repeat:anti-repeat duplex. The REC2 domain comprises amino acids 180-307 of the sequence of S. pyogenes Cas9.
  • The NUC lobe comprises the RuvC domain, the HNH domain, and the PAM-interacting (PI) domain. The RuvC domain shares structural similarity to retroviral integrase superfamily members and cleaves a single strand, e.g., the non-complementary strand of the target nucleic acid molecule. The RuvC domain is assembled from the three split RuvC motifs (RuvC I, RuvCII, and RuvCIII, which are often commonly referred to in the art as RuvCI domain, or N-terminal RuvC domain, RuvCII domain, and RuvCIII domain) at amino acids 1-59, 718-769, and 909-1098, respectively, of the sequence of S. pyogenes Cas9. Similar to the REC1 domain, the three RuvC motifs are linearly separated by other domains in the primary structure, however in the tertiary structure, the three RuvC motifs assemble and form the RuvC domain. The HNH domain shares structural similarity with HNH endonucleases, and cleaves a single strand, e.g., the complementary strand of the target nucleic acid molecule. The HNH domain lies between the RuvC II-III motifs and comprises amino acids 775-908 of the sequence of S. pyogenes Cas9. The PI domain interacts with the PAM of the target nucleic acid molecule, and comprises amino acids 1099-1368 of the sequence of S. pyogenes Cas9.
  • A RuvC-Like Domain and an HNH-Like Domain
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises an HNH-like domain and a RuvC-like domain. In an embodiment, cleavage activity is dependent on a RuvC-like domain and an HNH-like domain. A Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more of the following domains: a RuvC-like domain and an HNH-like domain. In an embodiment, a Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide and the eaCas9 molecule or eaCas9 polypeptide comprises a RuvC-like domain, e.g., a RuvC-like domain described below, and/or an HNH-like domain, e.g., an HNH-like domain described below.
  • RuvC-Like Domains
  • In an embodiment, a RuvC-like domain cleaves, a single strand, e.g., the non-complementary strand of the target nucleic acid molecule. The Cas9 molecule or Cas9 polypeptide can include more than one RuvC-like domain (e.g., one, two, three or more RuvC-like domains). In an embodiment, a RuvC-like domain is at least 5, 6, 7, 8 amino acids in length but not more than 20, 19, 18, 17, 16 or 15 amino acids in length. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises an N-terminal RuvC-like domain of about 10 to 20 amino acids, e.g., about 15 amino acids in length.
  • N-Terminal RuvC-Like Domains
  • Some naturally occurring Cas9 molecules comprise more than one RuvC-like domain with cleavage being dependent on the N-terminal RuvC-like domain. Accordingly, Cas9 molecules or Cas9 polypeptide can comprise an N-terminal RuvC-like domain. Exemplary N-terminal RuvC-like domains are described below.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula I:
  • (SEQ ID NO: 8)
    D-X1-G-X2-X3-X4-X5-G-X6-X7-X8-X9,
  • wherein,
  • X1 is selected from I, V, M, L and T (e.g., selected from I, V, and L);
  • X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
  • X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
  • X4 is selected from S, Y, N and F (e.g., S);
  • X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
  • X6 is selected from W, F, V, Y, S and L (e.g., W);
  • X7 is selected from A, S, C, V and G (e.g., selected from A and S);
  • X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
  • X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R, or, e.g., selected from T, V, I, L and A).
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:8, by as many as 1 but no more than 2, 3, 4, or 5 residues.
  • In embodiment, the N-terminal RuvC-like domain is cleavage competent.
  • In embodiment, the N-terminal RuvC-like domain is cleavage incompetent.
  • In an embodiment, a eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula II:
  • (SEQ ID NO: 9)
    D-X1-G-X2-X3-S-X5-G-X6-X7-X8-X9,,
  • wherein
  • X1 is selected from I, V, M, L and T (e.g., selected from I, V, and L);
  • X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
  • X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
  • X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
  • X6 is selected from W, F, V, Y, S and L (e.g., W);
  • X7 is selected from A, S, C, V and G (e.g., selected from A and S);
  • X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
  • X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A,
  • Y, M and R or selected from e.g., T, V, I, L and A).
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:9 by as many as 1 but no more than 2, 3, 4, or 5 residues.
  • In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
  • (SEQ ID NO: 10)
    D-I-G-X2-X3-S-V-G-W-A-X8-X9,
  • wherein
  • X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
  • X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
  • X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
  • X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:10 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
  • In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
  • (SEQ ID NO: 11)
    D-I-G-T-N-S-V-G-W-A-V-X,
  • wherein
  • X is a non-polar alkyl amino acid or a hydroxyl amino acid, e.g., X is selected from V, I, L and T (e.g., the eaCas9 molecule can comprise an N-terminal RuvC-like domain shown in FIGS. 2A-2G (is depicted as Y)).
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:11 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N-terminal RuvC like domain disclosed herein, e.g., in FIGS. 3A-3B or FIGS. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, 3 or all of the highly conserved residues identified in FIGS. 3A-3B or FIGS. 7A-7B are present.
  • In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N-terminal RuvC-like domain disclosed herein, e.g., in FIGS. 4A-4B or FIGS. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, or all of the highly conserved residues identified in FIGS. 4A-4B or FIGS. 7A-7B are present.
  • Additional RuvC-Like Domains
  • In addition to the N-terminal RuvC-like domain, the Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more additional RuvC-like domains. In an embodiment, the Cas9 molecule or Cas9 polypeptide can comprise two additional RuvC-like domains. Preferably, the additional RuvC-like domain is at least 5 amino acids in length and, e.g., less than 15 amino acids in length, e.g., 5 to 10 amino acids in length, e.g., 8 amino acids in length.
  • An additional RuvC-like domain can comprise an amino acid sequence:
  • (SEQ ID NO: 12)
    I-X1-X2-E-X3-A-R-E,

    wherein
  • X1 is V or H,
  • X2 is I, L or V (e.g., I or V); and
  • X3 is M or T.
  • In an embodiment, the additional RuvC-like domain comprises the amino acid sequence:
  • (SEQ ID NO: 13)
    I-V-X2-E-M-A-R-E,

    wherein
  • X2 is I, L or V (e.g., I or V) (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an additional RuvC-like domain shown in FIG. 2A-2G or FIGS. 7A-7B (depicted as B)).
  • An additional RuvC-like domain can comprise an amino acid sequence:
  • (SEQ ID NO: 14)
    H-H-A-X1-D-A-X2-X3,

    wherein
  • X1 is H or L;
  • X2 is R or V; and
  • X3 is E or V.
  • In an embodiment, the additional RuvC-like domain comprises the amino acid sequence:
  •  (SEQ ID NO: 15)
    H-H-A-H-D-A-Y-L.
  • In an embodiment, the additional RuvC-like domain differs from a sequence of SEQ ID NO: 12, 13, 14 or 15 by as many as 1 but no more than 2, 3, 4, or 5 residues.
  • In some embodiments, the sequence flanking the N-terminal RuvC-like domain is a sequences of formula V:
  • (SEQ ID NO: 16)
    K-X1′-Y-X2′-X3′-X4′-Z-T-D-X9′-Y,.
  • wherein
  • X1′ is selected from K and P,
  • X2′ is selected from V, L, I, and F (e.g., V, I and L);
  • X3′ is selected from G, A and S (e.g., G),
  • X4′ is selected from L, I, V and F (e.g., L);
  • X9′ is selected from D, E, N and Q; and
  • Z is an N-terminal RuvC-like domain, e.g., as described above.
  • HNH-Like Domains
  • In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. In an embodiment, an HNH-like domain is at least 15, 20, 25 amino acids in length but not more than 40, 35 or 30 amino acids in length, e.g., 20 to 35 amino acids in length, e.g., 25 to 30 amino acids in length. Exemplary HNH-like domains are described below.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VI:
  • (SEQ ID NO: 17)
    X1-X2-X3-H-X4-X5-P-X6-X7-X8-X9-X10-X11-X12-X13-
    X14-X15-N-X16-X17-X18-X19-X20-X21-X22-X23-N,

    wherein
  • X1 is selected from D, E, Q and N (e.g., D and E);
  • X2 is selected from L, I, R, Q, V, M and K;
  • X3 is selected from D and E;
  • X4 is selected from I, V, T, A and L (e.g., A, I and V);
  • X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
  • X6 is selected from Q, H, R, K, Y, I, L, F and W;
  • X7 is selected from S, A, D, T and K (e.g., S and A);
  • X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
  • X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
  • X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
  • X11 is selected from D, S, N, R, L and T (e.g., D);
  • X12 is selected from D, N and S;
  • X13 is selected from S, A, T, G and R (e.g., S);
  • X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
  • X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
  • X16 is selected from K, L, R, M, T and F (e.g., L, R and K);
  • X17 is selected from V, L, I, A and T;
  • X18 is selected from L, I, V and A (e.g., L and I);
  • X19 is selected from T, V, C, E, S and A (e.g., T and V);
  • X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
  • X21 is selected from S, P, R, K, N, A, H, Q, G and L;
  • X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
  • X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
  • In an embodiment, a HNH-like domain differs from a sequence of SEQ ID NO: 17 by at least one but no more than, 2, 3, 4, or 5 residues.
  • In an embodiment, the HNH-like domain is cleavage competent.
  • In an embodiment, the HNH-like domain is cleavage incompetent.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
  • (SEQ ID NO: 18)
    X1-X2-X3-H-X4-X5-P-X6-S-X8-X9-X10-D-D-S-X14-X15-
    N-K-V-L-X19-X20-X21-X22-X23-N,
  • wherein
  • X1 is selected from D and E;
  • X2 is selected from L, I, R, Q, V, M and K;
  • X3 is selected from D and E;
  • X4 is selected from I, V, T, A and L (e.g., A, I and V);
  • X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
  • X6 is selected from Q, H, R, K, Y, I, L, F and W;
  • X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
  • X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
  • X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
  • X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
  • X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
  • X19 is selected from T, V, C, E, S and A (e.g., T and V);
  • X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
  • X21 is selected from S, P, R, K, N, A, H, Q, G and L;
  • X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
  • X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
  • In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 18 by 1, 2, 3, 4, or 5 residues.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
  • (SEQ ID NO: 19)
    X1-V-X3-H-I-V-P-X6-S-X8-X9-X10-D-D-S-X14-X15-N-K-
    V-L-T-X20-X21-X22-X23-N,
  • wherein
  • X1 is selected from D and E;
  • X3 is selected from D and E;
  • X6 is selected from Q, H, R, K, Y, I, L and W;
  • X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
  • X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
  • X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
  • X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
  • X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
  • X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
  • X21 is selected from S, P, R, K, N, A, H, Q, G and L;
  • X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
  • X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
  • In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 19 by 1, 2, 3, 4, or 5 residues.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VIII:
  • (SEQ ID NO: 20)
    D-X2-D-H-I-X5-P-Q-X7-F-X9-X10-D-X12-S-I-D-N-X16-
    V-L-X19-X20-S-X22-X23-N,
  • wherein
  • X2 is selected from I and V;
  • X5 is selected from I and V;
  • X7 is selected from A and S;
  • X9 is selected from I and L;
  • X10 is selected from K and T;
  • X12 is selected from D and N;
  • X16 is selected from R, K and L; X19 is selected from T and V;
  • X20 is selected from S and R;
  • X22 is selected from K, D and A; and
  • X23 is selected from E, K, G and N (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an HNH-like domain as described herein).
  • In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 20 by as many as 1 but no more than 2, 3, 4, or 5 residues.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises the amino acid sequence of formula IX:
  • (SEQ ID NO: 21)
    L-Y-Y-L-Q-N-G-X1’-D-M-Y-X2’-X3’-X4’-X5’-L-D-I-
    X6’-X7’-L-S-X8’-Y-Z-N-R-X9’-K-X10’-D-X11’-V-P,
  • wherein
  • X1′ is selected from K and R;
  • X2′ is selected from V and T;
  • X3′ is selected from G and D;
  • X4′ is selected from E, Q and D;
  • X5′ is selected from E and D;
  • X6′ is selected from D, N and H;
  • X7′ is selected from Y, R and N;
  • X8′ is selected from Q, D and N; X9′ is selected from G and E;
  • X10′ is selected from S and G;
  • X11′ is selected from D and N; and
  • Z is an HNH-like domain, e.g., as described above.
  • In an embodiment, the eaCas9 molecule or eaCas9 polypeptide comprises an amino acid sequence that differs from a sequence of SEQ ID NO:21 by as many as 1 but no more than 2, 3, 4, or 5 residues.
  • In an embodiment, the HNH-like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in FIGS. 5A-5C or FIGS. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1 or both of the highly conserved residues identified in FIGS. 5A-5C or FIGS. 7A-7B are present.
  • In an embodiment, the HNH-like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in FIGS. 6A-6B or FIGS. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, all 3 of the highly conserved residues identified in FIGS. 6A-6B or FIGS. 7A-7B are present.
  • Cas9 Activities
  • Nuclease and Helicase Activities
  • In an embodiment, the Cas9 molecule or Cas9 polypeptide is capable of cleaving a target nucleic acid molecule. Typically wild type Cas9 molecules cleave both strands of a target nucleic acid molecule. Cas9 molecules and Cas9 polypeptides can be engineered to alter nuclease cleavage (or other properties), e.g., to provide a Cas9 molecule or Cas9 polypeptide which is a nickase, or which lacks the ability to cleave target nucleic acid. A Cas9 molecule or Cas9 polypeptide that is capable of cleaving a target nucleic acid molecule is referred to herein as an eaCas9 (an enzymatically active Cas9) molecule or eaCas9 polypeptide.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following enzymatic activities:
  • a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule;
  • a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
  • an endonuclease activity;
  • an exonuclease activity; and
  • a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid.
  • In an embodiment, an enzymatically active or an eaCas9 molecule or eaCas9 polypeptide cleaves both DNA strands and results in a double stranded break. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide cleaves only one strand, e.g., the strand to which the gRNA hybridizes to, or the strand complementary to the strand the gRNA hybridizes with. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH domain and an inactive, or cleavage incompetent, RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, RuvC domain.
  • Some Cas9 molecules or Cas9 polypeptides have the ability to interact with a gRNA molecule, and in conjunction with the gRNA molecule localize to a core target domain, but are incapable of cleaving the target nucleic acid, or incapable of cleaving at efficient rates. Cas9 molecules having no, or no substantial, cleavage activity are referred to herein as an eiCas9 molecule or eiCas9 polypeptide. For example, an eiCas9 molecule or eiCas9 polypeptide can lack cleavage activity or have substantially less, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule or eiCas9 polypeptide, as measured by an assay described herein.
  • Targeting And PAMs
  • A Cas9 molecule or Cas9 polypeptide, is a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence.
  • In an embodiment, the ability of an eaCas9 molecule or eaCas9 polypeptide to interact with and cleave a target nucleic acid is PAM sequence dependent. A PAM sequence is a sequence in the target nucleic acid. In an embodiment, cleavage of the target nucleic acid occurs upstream from the PAM sequence. EaCas9 molecules from different bacterial species can recognize different sequence motifs (e.g., PAM sequences). In an embodiment, an eaCas9 molecule of S. pyogenes recognizes the sequence motif NGG and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Mali et al., SCIENCE 2013; 339(6121): 823-826. In an embodiment, an eaCas9 molecule of S. thermophilus recognizes the sequence motif NGGNG (SEQ ID NO.: 90) and/or NNAGAAW (W=A or T) (SEQ ID NO.: 91) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from these sequences. See, e.g., Horvath et al., SCIENCE 2010; 327(5962):167-170, and Deveau et al., J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. mutans recognizes the sequence motif NGG and/or NAAR (R=A or G) (SEQ ID NO.: 92) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5 base pairs, upstream from this sequence. See, e.g., Deveau et al., J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRR (R=A or G) (SEQ ID NO.: 93) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRN (R=A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRT (R=A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRV (R=A or G) (SEQ ID NO.:) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of N. meningitidis recognizes the sequence motif NNNNGATT (SEQ ID NO.: 94) or NNNGCTT (R=A or G) (SEQ ID NO: 95) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Hou et al., PNAS 2013; 110(39):15644-15649. The ability of a Cas9 molecule to recognize a PAM sequence can be determined, e.g., using a transformation assay described in Jinek et al., SCIENCE 2012, 337:816. In the aforementioned embodiments, N can be any nucleotide residue, e.g., any of A, G, C or T.
  • As is discussed herein, Cas9 molecules can be engineered to alter the PAM specificity of the Cas9 molecule.
  • Exemplary naturally occurring Cas9 molecules are described in Chylinski et al., RNA BIOLOGY 2013 10:5, 727-737. Such Cas9 molecules include Cas9 molecules of a cluster 1 bacterial family, cluster 2 bacterial family, cluster 3 bacterial family, cluster 4 bacterial family, cluster 5 bacterial family, cluster 6 bacterial family, a cluster 7 bacterial family, a cluster 8 bacterial family, a cluster 9 bacterial family, a cluster 10 bacterial family, a cluster 11 bacterial family, a cluster 12 bacterial family, a cluster 13 bacterial family, a cluster 14 bacterial family, a cluster 15 bacterial family, a cluster 16 bacterial family, a cluster 17 bacterial family, a cluster 18 bacterial family, a cluster 19 bacterial family, a cluster 20 bacterial family, a cluster 21 bacterial family, a cluster 22 bacterial family, a cluster 23 bacterial family, a cluster 24 bacterial family, a cluster 25 bacterial family, a cluster 26 bacterial family, a cluster 27 bacterial family, a cluster 28 bacterial family, a cluster 29 bacterial family, a cluster 30 bacterial family, a cluster 31 bacterial family, a cluster 32 bacterial family, a cluster 33 bacterial family, a cluster 34 bacterial family, a cluster 35 bacterial family, a cluster 36 bacterial family, a cluster 37 bacterial family, a cluster 38 bacterial family, a cluster 39 bacterial family, a cluster 40 bacterial family, a cluster 41 bacterial family, a cluster 42 bacterial family, a cluster 43 bacterial family, a cluster 44 bacterial family, a cluster 45 bacterial family, a cluster 46 bacterial family, a cluster 47 bacterial family, a cluster 48 bacterial family, a cluster 49 bacterial family, a cluster 50 bacterial family, a cluster 51 bacterial family, a cluster 52 bacterial family, a cluster 53 bacterial family, a cluster 54 bacterial family, a cluster 55 bacterial family, a cluster 56 bacterial family, a cluster 57 bacterial family, a cluster 58 bacterial family, a cluster 59 bacterial family, a cluster 60 bacterial family, a cluster 61 bacterial family, a cluster 62 bacterial family, a cluster 63 bacterial family, a cluster 64 bacterial family, a cluster 65 bacterial family, a cluster 66 bacterial family, a cluster 67 bacterial family, a cluster 68 bacterial family, a cluster 69 bacterial family, a cluster 70 bacterial family, a cluster 71 bacterial family, a cluster 72 bacterial family, a cluster 73 bacterial family, a cluster 74 bacterial family, a cluster 75 bacterial family, a cluster 76 bacterial family, a cluster 77 bacterial family, or a cluster 78 bacterial family.
  • Exemplary naturally occurring Cas9 molecules include a Cas9 molecule of a cluster 1 bacterial family. Examples include a Cas9 molecule of: S. pyogenes (e.g., strain SF370, MGAS10270, MGAS10750, MGAS2096, MGAS315, MGAS5005, MGAS6180, MGAS9429, NZ131 and SSI-1), S. thermophilus (e.g., strain LMD-9), S. pseudoporcinus (e.g., strain SPIN 20026), S. mutans (e.g., strain UA159, NN2025), S. macacae (e.g., strain NCTC11558), S. gallolyticus (e.g., strain UCN34, ATCC BAA-2069), S. equines (e.g., strain ATCC 9812, MGCS 124), S. dysdalactiae (e.g., strain GGS 124), S. bovis (e.g., strain ATCC 700338), S. anginosus (e.g., strain F0211), S. agalactiae (e.g., strain NEM316, A909), Listeria monocytogenes (e.g., strain F6854), Listeria innocua (L. innocua, e.g., strain Clip11262), Enterococcus italicus (e.g., strain DSM 15952), or Enterococcus faecium (e.g., strain 1,231,408). Additional exemplary Cas9 molecules are a Cas9 molecule of Neisseria meningitidis (Hou et al., PNAS Early Edition 2013, 1-6 and a S. aureus cas9 molecule.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence: having 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with;
  • differs at no more than, 2, 5, 10, 15, 20, 30, or 40% of the amino acid residues when compared with;
  • differs by at least 1, 2, 5, 10 or 20 amino acids, but by no more than 100, 80, 70, 60, 50, 40 or 30 amino acids from; or
  • is identical to any Cas9 molecule sequence described herein, or a naturally occurring Cas9 molecule sequence, e.g., a Cas9 molecule from a species listed herein or described in Chylinski et al., RNA BIOLOGY 2013 10:5, 727-737; Hou et al., PNAS Early Edition 2013, 1-6; SEQ ID NO:1-4. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises one or more of the following activities: a nickase activity; a double stranded cleavage activity (e.g., an endonuclease and/or exonuclease activity); a helicase activity; or the ability, together with a gRNA molecule, to localize to a target nucleic acid.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises any of the amino acid sequence of the consensus sequence of FIGS. 2A-2G, wherein “*” indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, S. thermophilus, S. mutans and L. innocua, and “-” indicates any amino acid. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of the consensus sequence disclosed in FIGS. 2A-2G by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues. In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises the amino acid sequence of SEQ ID NO:7 of FIGS. 7A-7B, wherein “*” indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, or N. meningitidis, “-” indicates any amino acid, and “-” indicates any amino acid or absent. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of SEQ ID NO:6 or 7 disclosed in FIGS. 7A-7B by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues.
  • A comparison of the sequence of a number of Cas9 molecules indicate that certain regions are conserved. These are identified below as:
  • region 1 (residues1 to 180, or in the case of region 1'residues 120 to 180)
  • region 2 (residues360 to 480);
  • region 3 (residues 660 to 720);
  • region 4 (residues 817 to 900); and
  • region 5 (residues 900 to 960);
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises regions 1-5, together with sufficient additional Cas9 molecule sequence to provide a biologically active molecule, e.g., a Cas9 molecule having at least one activity described herein. In an embodiment, each of regions 1-5, independently, have 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with the corresponding residues of a Cas9 molecule or Cas9 polypeptide described herein, e.g., a sequence from FIGS. 2A-2G or from FIGS. 7A-7B.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1:
  • having 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 1-180 (the numbering is according to the motif sequence in FIG. 2 ; 52% of residues in the four Cas9 sequences in FIGS. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes;
  • differs by at least 1, 2, 5, 10 or 20 amino acids but by no more than 90, 80, 70, 60, 50, 40 or 30 amino acids from amino acids 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or Listeria innocua; or
  • is identical to 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1′:
  • having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 120-180 (55% of residues in the four Cas9 sequences in FIG. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
  • differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua; or
  • is identical to 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 2: having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 360-480 (52% of residues in the four Cas9 sequences in FIG. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
  • differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua; or
  • is identical to 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 3:
  • having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 660-720 (56% of residues in the four Cas9 sequences in FIG. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
  • differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua; or
  • is identical to 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 4:
  • having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 817-900 (55% of residues in the four Cas9 sequences in FIGS. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
  • differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua; or
  • is identical to 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 5:
  • having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 900-960 (60% of residues in the four Cas9 sequences in FIGS. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
  • differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua; or
  • is identical to 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
  • Engineered Or Altered Cas9 Molecules And Cas9 Polypeptides
  • Cas9 molecules and Cas9 polypeptides described herein, e.g., naturally occurring Cas9 molecules, can possess any of a number of properties, including: nuclease activity (e.g., endonuclease and/or exonuclease activity); helicase activity; the ability to associate functionally with a gRNA molecule; and the ability to target (or localize to) a site on a nucleic acid (e.g., PAM recognition and specificity). In an embodiment, a Cas9 molecule or Cas9 polypeptide can include all or a subset of these properties. In a typical embodiment, a Cas9 molecule or Cas9 polypeptide has the ability to interact with a gRNA molecule and, in concert with the gRNA molecule, localize to a site in a nucleic acid. Other activities, e.g., PAM specificity, cleavage activity, or helicase activity can vary more widely in Cas9 molecules and Cas9 polypeptides.
  • Cas9 molecules include engineered Cas9 molecules and engineered Cas9 polypeptides (engineered, as used in this context, means merely that the Cas9 molecule or Cas9 polypeptide differs from a reference sequences, and implies no process or origin limitation). An engineered Cas9 molecule or Cas9 polypeptide can comprise altered enzymatic properties, e.g., altered nuclease activity, (as compared with a naturally occurring or other reference Cas9 molecule) or altered helicase activity. As discussed herein, an engineered Cas9 molecule or Cas9 polypeptide can have nickase activity (as opposed to double strand nuclease activity). In an embodiment an engineered Cas9 molecule or Cas9 polypeptide can have an alteration that alters its size, e.g., a deletion of amino acid sequence that reduces its size, e.g., without significant effect on one or more, or any Cas9 activity. In an embodiment, an engineered Cas9 molecule or Cas9 polypeptide can comprise an alteration that affects PAM recognition. E.g., an engineered Cas9 molecule can be altered to recognize a PAM sequence other than that recognized by the endogenous wild-type PI domain. In an embodiment a Cas9 molecule or Cas9 polypeptide can differ in sequence from a naturally occurring Cas9 molecule but not have significant alteration in one or more Cas9 activities.
  • Cas9 molecules or Cas9 polypeptides with desired properties can be made in a number of ways, e.g., by alteration of a parental, e.g., naturally occurring, Cas9 molecules or Cas9 polypeptides, to provide an altered Cas9 molecule or Cas9 polypeptide having a desired property. For example, one or more mutations or differences relative to a parental Cas9 molecule, e.g., a naturally occurring or engineered Cas9 molecule, can be introduced. Such mutations and differences comprise: substitutions (e.g., conservative substitutions or substitutions of non-essential amino acids); insertions; or deletions. In an embodiment, a Cas9 molecule or Cas9 polypeptide can comprises one or more mutations or differences, e.g., at least 1, 2, 3, 4, 5, 10, 15, 20, 30, 40 or 50 mutations but less than 200, 100, or 80 mutations relative to a reference, e.g., a parental, Cas9 molecule.
  • In an embodiment, a mutation or mutations do not have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. In an embodiment, a mutation or mutations have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein.
  • Non-Cleaving and Modified-Cleavage Cas9 Molecules and Cas9 Polypeptides
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule or Cas9 polypeptide can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S. pyogenes, as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded nucleic acid (endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complementary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
  • Modified Cleavage eaCas9 Molecules and eaCas9 Polypeptides
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following activities: cleavage activity associated with an N-terminal RuvC-like domain; cleavage activity associated with an HNH-like domain; cleavage activity associated with an HNH-like domain and cleavage activity associated with an N-terminal RuvC-like domain.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH-like domain (e.g., an HNH-like domain described herein, e.g., SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 or SEQ ID NO: 21) and an inactive, or cleavage incompetent, N-terminal RuvC-like domain. An exemplary inactive, or cleavage incompetent N-terminal RuvC-like domain can have a mutation of an aspartic acid in an N-terminal RuvC-like domain, e.g., an aspartic acid at position 9 of the consensus sequence disclosed in FIGS. 2A-2G or an aspartic acid at position 10 of SEQ ID NO: 7, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 molecule or eaCas9 polypeptide differs from wild type in the N-terminal RuvC-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
  • In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, N-terminal RuvC-like domain (e.g., a RuvC-like domain described herein, e.g., SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, or SEQ ID NO: 16). Exemplary inactive, or cleavage incompetent HNH-like domains can have a mutation at one or more of: a histidine in an HNH-like domain, e.g., a histidine shown at position 856 of the consensus sequence disclosed in FIGS. 2A-2G, e.g., can be substituted with an alanine; and one or more asparagines in an HNH-like domain, e.g., an asparagine shown at position 870 of the consensus sequence disclosed in FIGS. 2A-2G and/or at position 879 of the consensus sequence disclosed in FIGS. 2A-2G, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 differs from wild type in the HNH-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
  • Alterations in the Ability to Cleave One or Both Strands of a Target Nucleic Acid
  • In an embodiment, exemplary Cas9 activities comprise one or more of PAM specificity, cleavage activity, and helicase activity. A mutation(s) can be present, e.g., in: one or more RuvC domains, e.g., an N-terminal RuvC domain; an HNH domain; a region outside the RuvC domains and the HNH domain. In an embodiment, a mutation(s) is present in a RuvC domain. In an embodiment, a mutation(s) is present in an HNH domain. In an embodiment, mutations are present in both a RuvC domain and an HNH domain.
  • Exemplary mutations that may be made in the RuvC domain or HNH domain with reference to the S. pyogenes sequence include: D10A, E762A, H840A, N854A, N863A and/or D986A.
  • In an embodiment, a Cas9 molecule is an eiCas9 molecule comprising one or more differences in a RuvC domain and/or in an HNH domain as compared to a reference Cas9 molecule, and the eiCas9 molecule does not cleave a nucleic acid, or cleaves with significantly less efficiency than does wildtype, e.g., when compared with wild type in a cleavage assay, e.g., as described herein, cuts with less than 50, 25, 10, or 1% of a reference Cas9 molecule, as measured by an assay described herein.
  • Whether or not a particular sequence, e.g., a substitution, may affect one or more activity, such as targeting activity, cleavage activity, etc, can be evaluated or predicted, e.g., by evaluating whether the mutation is conservative. In an embodiment, a “non-essential” amino acid residue, as used in the context of a Cas9 molecule, is a residue that can be altered from the wild-type sequence of a Cas9 molecule, e.g., a naturally occurring Cas9 molecule, e.g., an eaCas9 molecule, without abolishing or more preferably, without substantially altering a Cas9 activity (e.g., cleavage activity), whereas changing an “essential” amino acid residue results in a substantial loss of activity (e.g., cleavage activity).
  • In an embodiment, a Cas9 molecule comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S. aureus, S. pyogenes, or C. jejuni as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded break (endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. aureus, S. pyogenes, or C. jejuni); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complimentary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. aureus, S. pyogenes, or C. jejuni); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
  • In an embodiment, the altered Cas9 molecule is an eaCas9 molecule comprising one or more of the following activities: cleavage activity associated with a RuvC domain; cleavage activity associated with an HNH domain; cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain.
  • In an embodiment, the altered Cas9 molecule is an eiCas9 molecule which does not cleave a nucleic acid molecule (either double stranded or single stranded nucleic acid molecules) or cleaves a nucleic acid molecule with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can be a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. thermophilus, S. aureus, C. jejuni or N. meningitidis. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology. In an embodiment, the eiCas9 molecule lacks substantial cleavage activity associated with a RuvC domain and cleavage activity associated with an HNH domain.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. pyogenes shown in the consensus sequence disclosed in FIGS. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. pyogenes (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an “-” in the consensus sequence disclosed in FIGS. 2A-2G or SEQ ID NO: 7.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
  • the sequence corresponding to the fixed sequence of the consensus sequence disclosed in FIGS. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in FIGS. 2A-2G;
  • the sequence corresponding to the residues identified by “*” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the “*” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule; and,
  • the sequence corresponding to the residues identified by “-” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the “-” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. thermophilus shown in the consensus sequence disclosed in FIGS. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. thermophilus (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an “-” in the consensus sequence disclosed in FIGS. 2A-2G. In an embodiment
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
  • the sequence corresponding to the fixed sequence of the consensus sequence disclosed in FIGS. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in FIGS. 2A-2G;
  • the sequence corresponding to the residues identified by “*” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the “*” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule; and,
  • the sequence corresponding to the residues identified by “-” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the “-” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. mutans shown in the consensus sequence disclosed in FIGS. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. mutans (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an “-” in the consensus sequence disclosed in FIGS. 2A-2G.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
  • the sequence corresponding to the fixed sequence of the consensus sequence disclosed in FIGS. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in FIGS. 2A-2G;
  • the sequence corresponding to the residues identified by “*” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the “*” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule; and,
  • the sequence corresponding to the residues identified by “-” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the “-” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of L. innocula shown in the consensus sequence disclosed in FIGS. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of L. innocula (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an “-” in the consensus sequence disclosed in FIGS. 2A-2G.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
  • the sequence corresponding to the fixed sequence of the consensus sequence disclosed in FIGS. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in FIGS. 2A-2G;
  • the sequence corresponding to the residues identified by “*” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the “*” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule; and,
  • the sequence corresponding to the residues identified by “-” in the consensus sequence disclosed in FIGS. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the “-” residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule.
  • In an embodiment, the altered Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can be a fusion, e.g., of two of more different Cas9 molecules, e.g., of two or more naturally occurring Cas9 molecules of different species. For example, a fragment of a naturally occurring Cas9 molecule of one species can be fused to a fragment of a Cas9 molecule of a second species. As an example, a fragment of a Cas9 molecule of S. pyogenes comprising an N-terminal RuvC-like domain can be fused to a fragment of Cas9 molecule of a species other than S. pyogenes (e.g., S. thermophilus) comprising an HNH-like domain.
  • Cas9 Molecules and Cas9 Polypeptides with Altered PAM Recognition or No PAM Recognition
  • Naturally occurring Cas9 molecules can recognize specific PAM sequences, for example the PAM recognition sequences described above for, e.g., S. pyogenes, S. thermophilus, S. mutans, S. aureus and N. meningitidis.
  • In an embodiment, a Cas9 molecule or Cas9 polypeptide has the same PAM specificities as a naturally occurring Cas9 molecule. In an embodiment, a Cas9 molecule or Cas9 polypeptide has a PAM specificity not associated with a naturally occurring Cas9 molecule, or a PAM specificity not associated with the naturally occurring Cas9 molecule to which it has the closest sequence homology. For example, a naturally occurring Cas9 molecule can be altered, e.g., to alter PAM recognition, e.g., to alter the PAM sequence that the Cas9 molecule or Cas9 polypeptide recognizes to decrease off target sites and/or improve specificity; or eliminate a PAM recognition requirement. In an embodiment, a Cas9 molecule or Cas9 polypeptide can be altered, e.g., to increase length of PAM recognition sequence and/or improve Cas9 specificity to high level of identity (e.g., 98%, 99% or 100% match between gRNA and a PAM sequence), e.g., to decrease off target sites and increase specificity. In an embodiment, the length of the PAM recognition sequence is at least 4, 5, 6, 7, 8, 9, 10 or 15 amino acids in length. In an embodiment, the Cas9 specificity requires at least 90%, 95%, 96%, 97%, 98%, 99% or more homology between the gRNA and the PAM sequence. Cas9 molecules or Cas9 polypeptides that recognize different PAM sequences and/or have reduced off-target activity can be generated using directed evolution. Exemplary methods and systems that can be used for directed evolution of Cas9 molecules are described, e.g., in Esvelt et al. Nature 2011, 472(7344): 499-503. Candidate Cas9 molecules can be evaluated, e.g., by methods described in Section IV.
  • Alterations of the PI domain, which mediates PAM recognition are discussed below.
  • Synthetic Cas9 Molecules and Cas9 Polypeptides with Altered PI Domains
  • Current genome-editing methods are limited in the diversity of target sequences that can be targeted by the PAM sequence that is recognized by the Cas9 molecule utilized. A synthetic Cas9 molecule (or Syn-Cas9 molecule), or synthetic Cas9 polypeptide (or syn-Cas9 polypeptide), as that term is used herein, refers to a Cas9 molecule or Cas9 polypeptide that comprises a Cas9 core domain from one bacterial species and a functional altered PI domain, i.e., a PI domain other than that naturally associated with the Cas9 core domain, e.g., from a different bacterial species.
  • In an embodiment, the altered PI domain recognizes a PAM sequence that is different from the PAM sequence recognized by the naturally-occurring Cas9 from which the Cas9 core domain is derived. In an embodiment, the altered PI domain recognizes the same PAM sequence recognized by the naturally-occurring Cas9 from which the Cas9 core domain is derived, but with different affinity or specificity. A Syn-Cas9 molecule or Syn-Cas9 polypetide can be, respectively, a Syn-eaCas9 molecule or Syn-eaCas9 polypeptide or a Syn-eiCas9 molecule Syn-eiCas9 polypeptide.
  • An exemplary Syn-Cas9 molecule Syn-Cas9 polypetide comprises:
  • a) a Cas9 core domain, e.g., a Cas9 core domain from Table 28 or 29, e.g., a S. aureus, S. pyogenes, or C. jejuni Cas9 core domain; and
  • b) an altered PI domain from a species X Cas9 sequence selected from Tables 31 and 32.
  • In an embodiment, the RKR motif (the PAM binding motif) of said altered PI domain comprises: differences at 1, 2, or 3 amino acid residues; a difference in amino acid sequence at the first, second, or third position; differences in amino acid sequence at the first and second positions, the first and third positions, or the second and third positions; as compared with the sequence of the RKR motif of the native or endogenous PI domain associated with the Cas9 core domain.
  • In an embodiment, the Cas9 core domain comprises the Cas9 core domain from a species X Cas9 from Table 28 and said altered PI domain comprises a PI domain from a species Y Cas9 from Table 28.
  • In an embodiment, the RKR motif of the species X Cas9 is other than the RKR motif of the species Y Cas9.
  • In an embodiment, the RKR motif of the altered PI domain is selected from XXY, XNG, and XNQ.
  • In an embodiment, the altered PI domain has at least 60, 70, 80, 90, 95, or 100% homology with the amino acid sequence of a naturally occurring PI domain of said species Y from Table 28.
  • In an embodiment, the altered PI domain differs by no more than 50, 40, 30, 25, 20, 15, 10, 5, 4, 3, 2, or 1 amino acid residue from the amino acid sequence of a naturally occurring PI domain of said second species from Table 28.
  • In an embodiment, the Cas9 core domain comprises a S. aureus core domain and altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 32.
  • In an embodiment, the Cas9 core domain comprises a S. pyogenes core domain and the altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 32.
  • In an embodiment, the Cas9 core domain comprises a C. jejuni core domain and the altered PI domain comprises: an A. denitrificans PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 32.
  • In an embodiment, the Cas9 molecule further comprises a linker disposed between said Cas9 core domain and said altered PI domain.
  • In an embodiment, the linker comprises: a linker described elsewhere herein disposed between the Cas9 core domain and the heterologous PI domain. Suitable linkers are further described in Section V.
  • Exemplary altered PI domains for use in Syn-Cas9 molecules are described in Tables 31 and 32. The sequences for the 83 Cas9 orthologs referenced in Tables 31 and 32 are provided in Table 28. Table 30 provides the Cas9 orthologs with known PAM sequences and the corresponding RKR motif.
  • In an embodiment, a Syn-Cas9 molecule may also be size-optimized, e.g., the Syn-Cas9 molecule comprises one or more deletions, and optionally one or more linkers disposed between the amino acid residues flanking the deletions. In an embodiment, a Syn-Cas9 molecule comprises a REC deletion.
  • Size-Optimized Cas9 Molecules
  • Engineered Cas9 molecules and engineered Cas9 polypeptides described herein include a Cas9 molecule or Cas9 polypeptide comprising a deletion that reduces the size of the molecule while still retaining desired Cas9 properties, e.g., essentially native conformation, Cas9 nuclease activity, and/or target nucleic acid molecule recognition. Provided herein are Cas9 molecules or Cas9 polypeptides comprising one or more deletions and optionally one or more linkers, wherein a linker is disposed between the amino acid residues that flank the deletion. Methods for identifying suitable deletions in a reference Cas9 molecule, methods for generating Cas9 molecules with a deletion and a linker, and methods for using such Cas9 molecules will be apparent to one of ordinary skill in the art upon review of this document.
  • A Cas9 molecule, e.g., a S. aureus, S. pyogenes, or C. jejuni, Cas9 molecule, having a deletion is smaller, e.g., has reduced number of amino acids, than the corresponding naturally-occurring Cas9 molecule. The smaller size of the Cas9 molecules allows increased flexibility for delivery methods, and thereby increases utility for genome-editing. A Cas9 molecule can comprise one or more deletions that do not substantially affect or decrease the activity of the resultant Cas9 molecules described herein. Activities that are retained in the Cas9 molecules comprising a deletion as described herein include one or more of the following:
  • a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule; a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities; an endonuclease activity;
  • an exonuclease activity;
  • a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid;
  • and recognition activity of a nucleic acid molecule, e.g., a target nucleic acid or a gRNA.
  • Activity of the Cas9 molecules described herein can be assessed using the activity assays described herein or in the art.
  • Identifying Regions Suitable for Deletion
  • Suitable regions of Cas9 molecules for deletion can be identified by a variety of methods. Naturally-occurring orthologous Cas9 molecules from various bacterial species, e.g., any one of those listed in Table 28, can be modeled onto the crystal structure of S. pyogenes Cas9 (Nishimasu et al., Cell, 156:935-949, 2014) to examine the level of conservation across the selected Cas9 orthologs with respect to the three-dimensional conformation of the protein. Less conserved or unconserved regions that are spatially located distant from regions involved in Cas9 activity, e.g., interface with the target nucleic acid molecule and/or gRNA, represent regions or domains are candidates for deletion without substantially affecting or decreasing Cas9 activity.
  • REC-Optimized Cas9 Molecules
  • A REC-optimized Cas9 molecule, as that term is used herein, refers to a Cas9 molecule that comprises a deletion in one or both of the REC2 domain and the RE1CT domain (collectively a REC deletion), wherein the deletion comprises at least 10% of the amino acid residues in the cognate domain. A REC-optimized Cas9 molecule can be an eaCas9 molecule or an eiCas9 molecule. An exemplary REC-optimizedCas9 molecule comprises:
  • a) a deletion selected from:
      • i) a REC2 deletion;
      • ii) a REC1CT deletion; or
      • iii) a REC1SUB deletion.
  • Optionally, a linker is disposed between the amino acid residues that flank the deletion. In an embodiment a Cas9 molecule includes only one deletion, or only two deletions. A Cas9 molecule can comprise a REC2 deletion and a REC1CT deletion. A Cas9 molecule can comprise a REC2 deletion and a REC1SUB deletion.
  • Generally, the deletion will contain at least 10% of the amino acids in the cognate domain, e.g., a REC2 deletion will include at least 10% of the amino acids in the REC2 domain.
  • A deletion can comprise: at least 10, 20, 30, 40, 50, 60, 70, 80, or 90% of the amino acid residues of its cognate domain; all of the amino acid residues of its cognate domain; an amino acid residue outside its cognate domain; a plurality of amino acid residues outside its cognate domain; the amino acid residue immediately N terminal to its cognate domain; the amino acid residue immediately C terminal to its cognate domain; the amino acid residue immediately N terminal to its cognate and the amino acid residue immediately C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to its cognate domain and a plurality of e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain.
  • In an embodiment, a deletion does not extend beyond: its cognate domain; the N terminal amino acid residue of its cognate domain; the C terminal amino acid residue of its cognate domain.
  • A REC-optimized Cas9 molecule can include a linker disposed between the amino acid residues that flank the deletion. Suitable linkers for use between the amino acid resides that flank a REC deletion in a REC-optimized Cas9 molecule is disclosed in Section V.
  • In an embodiment a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, has at least 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99, or 100% homology with the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
  • In an embodiment, a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
  • In an embodiment, a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associate linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25% of the, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 28, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
  • For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters. Methods of alignment of sequences for comparison are well known in the art. Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith and Waterman, (1970) Adv. Appl. Math. 2:482c, by the homology alignment algorithm of Needleman and Wunsch, (1970) J. Mol. Biol. 48:443, by the search for similarity method of Pearson and Lipman, (1988) Proc. Nat'l. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, Wis.), or by manual alignment and visual inspection (see, e.g., Brent et al., (2003) Current Protocols in Molecular Biology).
  • Two examples of algorithms that are suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2.0 algorithms, which are described in Altschul et al., (1977) Nuc. Acids Res. 25:3389-3402; and Altschul et al., (1990) J. Mol. Biol. 215:403-410, respectively. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information.
  • The percent identity between two amino acid sequences can also be determined using the algorithm of E. Meyers and W. Miller, (1988) Comput. Appl. Biosci. 4:11-17) which has been incorporated into the ALIGN program (version 2.0), using a PAM120 weight residue table, a gap length penalty of 12 and a gap penalty of 4. In addition, the percent identity between two amino acid sequences can be determined using the Needleman and Wunsch (1970) J. Mol. Biol. 48:444-453) algorithm which has been incorporated into the GAP program in the GCG software package (available at www.gcg.com), using either a Blossom 62 matrix or a PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length weight of 1, 2, 3, 4, 5, or 6.
  • Sequence information for exemplary REC deletions are provided for 83 naturally-occurring Cas9 orthologs in Table 28.
  • The amino acid sequences of exemplary Cas9 molecules from different bacterial species are shown below.
  • TABLE 28
    Amino Add Sequence of Cas9 Orthologs
    REC2 REC1CT Recsub
    start stop start stop start stop
    Amino acid (AA (AA # AA (AA (AA # AA (AA (AA # AA
    Species/Composite ID sequence pos) pos) deleted (n) pos) pos) deleted (n) pos) pos) deleted (n)
    Staphylococcus Aureus SEQ ID NO: 126 166 41 296 352 57 296 352 57
    tr|J7RUA5|J7RUA5_STAAU 304
    Streptococcus Pyogenes SEQ ID NO: 176 314 139 511 592 82 511 592 82
    sp|Q99ZW2|CAS9_STRP1 305
    Campylobacter jejuni NCTC SEQ ID NO: 137 181 45 316 360 45 316 360 45
    11168 306
    gi|218563121|ref|YP_002344900.1
    Bacteroides fragilis NCTC 9343 SEQ ID NO: 148 339 192 524 617 84 524 617 84
    gi|60683389|ref|YP_213533.1| 307
    Bifidobacterium bifidum S17 SEQ ID NO: 173 335 163 516 607 87 516 607 87
    gi|310286728|ref|YP_003937986. 308
    Veillonella atypica ACS-134-V- SEQ ID NO: 185 339 155 574 663 79 574 663 79
    Col7a 309
    gi|303229466|ref|ZP_07316256.1
    Lactobacillus rhamnosus GG SEQ ID NO: 169 320 152 559 645 78 559 645 78
    gi|258509199|ref|YP_003171950.1 310
    Filifactor alocis ATCC 35896 SEQ ID NO: 166 314 149 508 592 76 508 592 76
    gi|374307738|ref|YP_005054169.1 311
    Oenococcus kitaharae DSM SEQ ID NO: 169 317 149 555 639 80 555 639 80
    17330 312
    gi|366983953|gb|EHN59352.1|
    Fructobacillus fructosus KCTC SEQ ID NO: 168 314 147 488 571 76 488 571 76
    3544 313
    gi|339625081|ref|ZP_08660870.1
    Catenibacterium mitsuokai DSM SEQ ID NO: 173 318 146 511 594 78 511 594 78
    15897 314
    gi|224543312|ref|ZP_03683851.1
    Finegoldia magna ATCC 29328 SEQ ID NO: 168 313 146 452 534 77 452 534 77
    gi|169823755|ref|YP_001691366.1 315
    Coriobacterium glomerans PW2 SEQ ID NO: 175 318 144 511 592 82 511 592 82
    gi|328956315|ref|YP_004373648.1 316
    Eubacterium yurii ATCC 43715 SEQ ID NO: 169 310 142 552 633 76 552 633 76
    gi|306821691|ref|ZP_07455288.1 317
    Peptoniphilus duerdenii ATCC SEQ ID NO: 171 311 141 535 615 76 535 615 76
    BAA-1640 318
    gi|304438954|ref|ZP_07398877.1
    Acidaminococcus sp. D21 SEQ ID NO: 167 306 140 511 591 75 511 591 75
    gi|227824983|ref|ZP_03989815.1 319
    Lactobacillus farciminis KCTC SEQ ID NO: 171 310 140 542 621 85 542 621 85
    3681 320
    gi|336394882|ref|ZP_08576281.1
    Streptococcus sanguinis SK49 SEQ ID NO: 185 324 140 411 490 85 411 490 85
    gi|422884106|ref|ZP_16930555.1 321
    Coprococcus catus GD-7 SEQ ID NO: 172 310 139 556 634 76 556 634 76
    gi|291520705|emb|CBK78998.11 322
    Streptococcus mutans UA159 SEQ ID NO: 176 314 139 392 470 84 392 470 84
    gi|24379809|ref|NP_721764.1| 323
    Streptococcus pyogenes M1 GAS SEQ ID NO: 176 314 139 523 600 82 523 600 82
    gi|13622193|gb|AAK33936.1| 324
    Streptococcus thermophilus SEQ ID NO: 176 314 139 481 558 81 481 558 81
    LMD-9 325
    gi|116628213|ref|YP_820832.1|
    Fusobacterium nucleatum SEQ ID NO: 171 308 138 537 614 76 537 614 76
    ATCC49256 326
    gi|34762592|ref|ZP_00143587.1|
    Pianococcus antarcticus DSM SEQ ID NO: 162 299 138 538 614 94 538 614 94
    14505 327
    gi|389815359|ref|ZP_10206685.1
    Treponema denticola ATCC SEQ ID NO: 169 305 137 524 600 81 524 600 81
    35405 328
    gi|42525843|ref|NP_970941.1|
    Solobacterium moorei F0204 SEQ ID NO: 179 314 136 544 619 77 544 619 77
    gi|320528778|ref|ZP_08029929.1 329
    Staphylococcus SEQ ID NO: 164 299 136 531 606 92 531 606 92
    pseudintermedius ED99 330
    gb|323463801|gb|ADX75954.1|
    Flavobacterium branchiophilum SEQ ID NO: 162 286 125 538 613 63 538 613 63
    FL-15 331
    gi|347536497|ref|YP_004843922.1
    Ignavibacterium album JCM SEQ ID NO: 223 329 107 357 432 90 357 432 90
    16511 332
    gi|385811609|ref|YP_005848005.1
    Bergeyella zoohelcum ATCC SEQ ID NO: 165 261 97 529 604 56 529 604 56
    43767 333
    gi|423317190|ref|ZP_17295095.1
    Nitrobacter hamburgensis X14 SEQ ID NO: 169 253 85 536 611 48 536 611 48
    gi|92109262|ref|YP_571550.1| 334
    Odoribacter laneus YIT 12061 SEQ ID NO: 164 242 79 535 610 63 535 610 63
    gi|374384763|ref|ZP_09642280.1 335
    Legionella pneumophila str. SEQ ID NO: 164 239 76 402 476 67 402 476 67
    Paris 336
    gi|54296138|ref|YP_122507.1|
    Bacteroides sp. 20 3 SEQ ID NO: 198 269 72 530 604 83 530 604 83
    gi|301311869|ref|ZP_07217791.1 337
    Akkermansia muciniphila ATCC SEQ ID NO: 136 202 67 348 418 62 348 418 62
    BAA-835 338
    gi|187736489|ref|YP_001878601
    Prevotella sp. C561 SEQ ID NO: 184 250 67 357 425 78 357 425 78
    gi|345885718|ref|ZP_08837074.1 339
    Wolinella succinogenes DSM SEQ ID NO: 157 218 36 401 468 60 401 468 60
    1740 340
    gi|34557932|ref|NP_907747.1|
    Alicyclobacillus hesperidum SEQ ID NO: 142 196 55 416 482 61 416 482 61
    URH17-3-68 341
    gi|403744858|ref|ZP_10953934.1
    Caenispirillum salinarum AK4 SEQ ID NO: 161 214 54 330 393 68 330 393 68
    gi|427429481|ref|ZP_18919511.1 342
    Eubacterium rectale ATCC SEQ ID NO: 133 185 53 322 384 60 322 384 60
    33656 343
    gi|238924075|ref|YP_002937591.1
    Mycoplasma synoviae 53 SEQ ID NO: 187 239 53 319 381 80 319 381 80
    gi|71894592|ref|YP_278700.1| 344
    Porphyromonas sp. oral taxon SEQ ID NO: 150 202 53 309 371 60 309 371 60
    279 str. F0450 345
    gi|402847315|ref|ZP_10895610.1
    Streptococcus thermophilus SEQ ID NO: 127 178 139 424 486 81 424 486 81
    LMD-9 346
    gi|116627542|ref|YP_820161.1|
    Roseburia inulinivorans DSM SEQ ID NO: 154 204 51 318 380 69 318 380 69
    16841 347
    gi|225377804|ref|ZP_03755025.1
    Methylosinus trichosporium SEQ ID NO: 144 193 50 426 488 64 426 488 64
    OB3b 348
    gi|296446027|ref|ZP_06887976.1
    Ruminococcus albus 8 SEQ ID NO: 139 187 49 351 412 55 351 412 55
    gi|325677756|ref|ZP_08157403.1 349
    Bifidobacterium longum SEQ ID NO: 183 230 48 370 431 44 370 431 44
    DJO10A 350
    gi|189440764|ref|YP_001955845
    Enterococcus faecalis TX0012 SEQ ID NO: 123 170 48 327 387 60 327 387 60
    gi|315149830|gb|EFT93846.1| 351
    Mycoplasma mobile 163K SEQ ID NO: 179 226 48 314 374 79 314 374 79
    gi|47458868|ref|YP_015730.1| 352
    Actinomyces coleocanis DSM SEQ ID NO: 147 193 47 358 418 40 358 418 40
    15436 353
    gi|227494853|ref|ZP_03925169.1
    Dinoroseobacter shibae DFL 12 SEQ ID NO: 138 184 47 338 398 48 338 398 48
    gi|159042956|ref|YP_001531750.1 354
    Actinomyces sp. oral taxon 180 SEQ ID NO: 183 228 46 349 409 40 349 409 40
    str. F0310 355
    gi|315605738|ref|ZP_07880770.1
    Alcanivorax sp. W11-5 SEQ ID NO: 139 183 45 344 404 61 344 404 61
    gi|407803669|ref|ZP_11150502.1 356
    Aminomonas paucivorans DSM SEQ ID NO: 134 178 45 341 401 63 341 401 63
    12260 357
    gi|312879015|ref|ZP_07738815.1
    Mycoplasma cams PG 14 SEQ ID NO: 139 183 45 319 379 76 319 379 76
    gi|384393286|gb|EIE39736.1| 358
    Lactobacillus coryniformis SEQ ID NO: 141 184 44 328 387 61 328 387 61
    KCTC 3535 359
    gi|336393381|ref|ZP_08574780.1
    Elusimicrobium minutum Pei191 SEQ ID NO: 177 219 43 322 381 47 322 381 47
    gi|187250660|ref|YP_001875142.1 360
    Neisseria meningitidis Z2491 SEQ ID NO: 147 189 43 360 419 61 360 419 61
    gi|218767588|ref|YP_002342100.1 361
    Pasteurella multocida str. Pm70 SEQ ID NO: 139 181 43 319 378 61 319 378 61
    gi|15602992|ref|NP_246064.1| 362
    Rhodovulum sp. PH10 SEQ ID NO: 141 183 43 319 378 48 319 378 48
    gi|402849997|ref|ZP_10898214.1 363
    Eubacterium dolichum DSM SEQ ID NO: 131 172 42 303 361 59 303 361 59
    3991 364
    gi|160915782|ref|ZP_02077990.1
    Nitratifractor salsuginis DSM SEQ ID NO: 143 184 42 347 404 61 347 404 61
    16511 365
    gi|319957206|ref|YP_004168469.1
    Rhodospirillum rubrum ATCC SEQ ID NO: 139 180 42 314 371 55 314 371 55
    11170 366
    gi|83591793|ref|YP_425545.1|
    Clostridium cellulolyticum H10 SEQ ID NO: 137 176 40 320 376 61 320 376 61
    gi|220930482|ref|YP_002507391.1 367
    Helicobacter mustelae 12198 SEQ ID NO: 148 187 40 298 354 48 298 354 48
    gi|291276265|ref|YP_003516037.1 368
    Ilyobacter polytropus DSM 2926 SEQ ID NO: 134 173 40 462 517 63 462 517 63
    gi|310780384|ref|YP_003968716.1 369
    Sphaerochaeta globus str. Buddy SEQ ID NO: 163 202 40 335 389 45 335 389 45
    gi|325972003|ref|YP_004248194.1 370
    Staphylococcus lugdunensis SEQ ID NO: 128 167 40 337 391 57 337 391 57
    M23590 371
    gi|315659848|ref|ZP_07912707.1
    Treponema sp. JC4 SEQ ID NO: 144 183 40 328 382 63 328 382 63
    gi|384109266|ref|ZP_10010146.1 372
    uncultured delta proteobacterium SEQ ID NO: 154 193 40 313 365 55 313 365 55
    HF0070 07E19 373
    gi|297182908|gb|ADI19058.1|
    Alicycliphilus denitrificans K601 SEQ ID NO: 140 178 39 317 366 48 317 366 48
    gi|330822845|ref|YP_004386148.1 374
    Azospirillum sp. B510 SEQ ID NO: 205 243 39 342 389 46 342 389 46
    gi|288957741|ref|YP_003448082.1 375
    Bradyrhizobium sp. BTAi1 SEQ ID NO: 143 181 39 323 370 48 323 370 48
    gi|148255343|ref|YP_001239928.1 376
    Parvibaculum lavamentivorans SEQ ID NO: 138 176 39 327 374 58 327 374 58
    DS-1 377
    gi|154250555|ref|YP_001411379.1
    Prevotella timonensis CRIS 5C- SEQ ID NO: 170 208 39 328 375 61 328 375 61
    B1 378
    gi|282880052|ref|ZP_06288774.1
    Bacillus smithii 7 3 47FAA SEQ ID NO: 134 171 38 401 448 63 401 448 63
    gi|365156657|ref|ZP_09352959.1 379
    Cand. Puniceispirillum marinum SEQ ID NO: 135 172 38 344 391 53 344 391 53
    IMCC1322 380
    gi|294086111|ref|YP_003552871.1
    Barnesiella intestinihominis YIT SEQ ID NO: 140 176 37 371 417 60 371 417 60
    11860 381
    gi|404487228|ref|ZP_11022414.1
    Ralstonia syzygii R24 SEQ ID NO: 140 176 37 395 440 50 395 440 50
    gi|344171927|emb|CCA84553.1| 382
    Wolinella succinogenes DSM SEQ ID NO: 145 180 36 348 392 60 348 392 60
    1740 383
    gi|34557790|ref|NP_907605.1|
    Mycoplasma gallisepticumstr. F SEQ ID NO: 144 177 34 373 416 71 373 416 71
    gi|284931710|gb|ADC31648.1| 384
    Acidothermus cellulolyticus 11B SEQ ID NO: 150 182 33 341 380 58 341 380 58
    gi|117929158|ref|YP_873709.1| 385
    Mycoplasma ovipneumoniae SEQ ID NO: 156 184 29 381 420 62 381 420 62
    SC01 386
    gi|363542550|ref|ZP_09312133.1
  • TABLE 29
    Amino Acid Sequence of Cas9 Core Domains
    Cas9 Start (AA Cas9 Stop (AA
    Strain Name pos) pos)
    Start and Stop numbers refer to the
    sequence in Table 28
    Staphylococcus Aureus 1 772
    Streptococcus Pyogenes 1 1099
    Campulobacter Jejuni 1 741
  • TABLE 30
    Identified PAM sequences and corresponding RKR motifs.
    PAM sequence RKR motif
    Strain Name (NA) (AA)
    Streptococcus pyogenes NGG RKR
    Streptococcus mutans NGG RKR
    Streptococcus thermophilus A NGGNG RYR
    Treponema denticola NAAAAN VAK
    Streptococcus thermophilus B NNAAAAW IYK
    Campylobacter jejuni NNNNACA NLK
    Pasteurella multocida GNNNCNNA KDG
    Neisseria meningitidis NNNNGATT or IGK
    Staphylococcus aureus NNGRRV (R = A or G; V = A. G NDK
    or C)
    NNGRRT (R = A or G)

    PI domains are provided in Tables 31 and 32.
  • TABLE 31
    Altered PI Domains
    PI Start PI Stop (AA Length of RKR
    Strain Name (AA pos) pos) PI (AA) motif (AA)
    Start and Stop numbers
    refer to the sequences in
    Table 28
    Alicycliphilus denitrificans K601 837 1029 193 --Y
    Campylobacter jejuni NCTC 11168 741 984 244 -NG
    Helicobacter mustelae 12198 771 1024 254 -NQ
  • TABLE 32
    Other Altered PI Domains
    PI Start PI Stop Length RKR
    (AA (AA of PI motif
    Strain Name pos) pos) (AA) (AA)
    Start and Stop numbers
    refer to the sequences in
    Table 28
    Akkermansia muciniphila ATCC BAA-835 871 1101 231 ALK
    Ralstonia syzygii R24 821 1062 242 APY
    Cand. Puniceispirillum marinum IMCC1322 815 1035 221 AYK
    Fructobacillus fructosus KCTC 3544 1074 1323 250 DGN
    Eubacterium yurii ATCC 43715 1107 1391 285 DGY
    Eubacterium dolichum DSM 3991 779 1096 318 DKK
    Dinoroseobacter shibae DFL 12 851 1079 229 DPI
    Clostridium cellulolyticum H10 767 1021 255 EGK
    Pasteurella multocida str. Pm70 815 1056 242 ENN
    Mycoplasma canis PG 14 907 1233 327 EPK
    Porphyromonas sp. oral taxon 279 str. F0450 935 1197 263 EPT
    Filifactor alocis ATCC 35896 1094 1365 272 EVD
    Aminomonas paucivorans DSM 12260 801 1052 252 EVY
    Wolinella succinogenes DSM 1740 1034 1409 376 EYK
    Oenococcus kitaharae DSM 17330 1119 1389 271 GAL
    CoriobacteriumglomeransPW2 1126 1384 259 GDR
    Peptoniphilus duerdenii ATCC BAA-1640 1091 1364 274 GDS
    Bifidobacterium bifidum S17 1138 1420 283 GGL
    Alicyclobacillus hesperidum URH17-3-68 876 1146 271 GGR
    Roseburia inulinivorans DSM 16841 895 1152 258 GGT
    Actinomyces coleocanis DSM 15436 843 1105 263 GKK
    Odoribacter laneus YIT 12061 1103 1498 396 GKV
    Coprococcus catus GD-7 1063 1338 276 GNQ
    Enterococcus faecalis TX0012 829 1150 322 GRK
    Bacillus smithii 7 3 47FAA 809 1088 280 GSK
    Legionella pneumophila str. Paris 1021 1372 352 GTM
    Bacteroides fragilis NCTC 9343 1140 1436 297 IPV
    Mycoplasma ovipneumoniae SC01 923 1265 343 IRI
    Actinomyces sp. oral taxon 180 str. F0310 895 1181 287 KEK
    Treponema sp. JC4 832 1062 231 KIS
    Fusobacteriumnucleatum ATCC49256 1073 1374 302 KKV
    Lactobacillus farciminis KCTC 3681 1101 1356 256 KKV
    Nitratifractor salsuginis DSM 16511 840 1132 293 KMR
    Lactobacillus coryniformis KCTC 3535 850 1119 270 KNK
    Mycoplasma mobile 163K 916 1236 321 KNY
    Flavobacterium branchiophilum FL-15 1182 1473 292 KQK
    Prevotella timonensis CRIS 5C-B1 957 1218 262 KQQ
    Methylosinus trichosporium OB3b 830 1082 253 KRP
    Prevotella sp. C561 1099 1424 326 KRY
    Mycoplasma gallisepticum str. F 911 1269 359 KTA
    Lactobacillus rhamnosus GG 1077 1363 287 KYG
    Wolinella succinogenes DSM 1740 811 1059 249 LPN
    Streptococcus thermophilus LMD-9 1099 1388 290 MLA
    Treponema denticola ATCC 35405 1092 1395 304 NDS
    Bergeyella zoohelcum ATCC 43767 1098 1415 318 NEK
    Veillonella atypica ACS-134-V-Col7a 1107 1398 292 NGF
    Neisseria meningitidis Z2491 835 1082 248 NHN
    Ignavibacterium album JCM 16511 1296 1688 393 NKK
    Ruminococcus albus 8 853 1156 304 NNF
    Streptococcus thermophilus LMD-9 811 1121 311 NNK
    Barnesiella intestinihominis YIT 11860 871 1153 283 NPV
    Azospirillum sp. B510 911 1168 258 PFH
    Rhodospirillum rubrum ATCC 11170 863 1173 311 PRG
    Pianococcus antarcticus DSM 14505 1087 1333 247 PYY
    Staphylococcus pseudintermedius ED99 1073 1334 262 QIV
    Alcanivorax sp. W11-5 843 1113 271 RIE
    Bradyrhizobium sp. BTAi1 811 1064 254 RIY
    Streptococcus pyogenes M1 GAS 1099 1368 270 RKR
    Streptococcus mutans UA159 1078 1345 268 RKR
    Streptococcus Pyogenes 1099 1368 270 RKR
    Bacteroides sp. 20 3 1147 1517 371 RNI
    S. aureus 772 1053 282 RNK
    Solobacterium moorei F0204 1062 1327 266 RSG
    Finegoldia magna ATCC 29328 1081 1348 268 RTE
    uncultured delta proteobacterium HF0070 07E19 770 1011 242 SGG
    Acidaminococcus sp. D21 1064 1358 295 SIG
    Eubacterium rectale ATCC 33656 824 1114 291 SKK
    Caenispirillum salinarum AK4 1048 1442 395 SLV
    Acidothermus cellulolyticus 11B 830 1138 309 SPS
    Catenibacterium mitsuokai DSM 15897 1068 1329 262 SPT
    Parvibaculum lavamentivorans DS-1 827 1037 211 TGN
    Staphylococcus lugdunensis M23590 772 1054 283 TKK
    Streptococcus sanguinis SK49 1123 1421 299 TRM
    Elusimicrobium minutum Pei191 910 1195 286 TTG
    Nitrobacter hamburgensis X14 914 1166 253 VAY
    Mycoplasma synoviae 53 991 1314 324 VGF
    Sphaerochaeta globus str. Buddy 877 1179 303 VKG
    Ilyobacter polytropus DSM 2926 837 1092 256 VNG
    Rhodovulum sp. PH 10 821 1059 239 VPY
    Bifidobacterium longum DJO10A 904 1187 284 VRK
  • Amino acid sequences described in Table 28:
    SEQ ID NO: 304
    MKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI
    QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT
    GNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQ
    LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY
    NALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK
    PEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS
    NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP
    VVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTT
    GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRSVSFDNSFNNKVLVK
    QEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDINRFSVQKD
    FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAED
    ALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD
    YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH
    DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD
    YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNQA
    EFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRIIKTIASKT
    QSIKKYSTDILGNLYEVKSKKHPQIIKKG
    SEQ ID NO: 305
    MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRL
    KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY
    HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY
    NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF
    DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS
    MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD
    GTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI
    PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS
    LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD
    SVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA
    HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF
    KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ
    TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR
    LSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK
    FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS
    KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK
    SEQEIGKATAKYFEYSNIMNEFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS
    MPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG
    KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLAS
    AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRV
    ILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD
    ATLIHQSITGLYETRIDLSQLGGD
    SEQ ID NO: 306
    MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKAR
    LNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKR
    RGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYE
    RCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAP
    KNSPLAFMEVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYE
    FKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDS
    LSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVT
    NPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELEC
    EKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVL
    VFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDT
    RYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNH
    LHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLD
    KIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFR
    VDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCESLYKDSLILI
    QTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVF
    EKYIVSALGEVTKAEFRQREDFKK
    SEQ ID NO: 307
    MKRILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRTLK
    RGMRRNLQRYKLRRETLTEVLKEHKLITEDTILSENGNRTTFETYRLRAKAVTEEISLEEFARV
    LLMINKKRGYKSSRKAKGVEEGTLIDGMDIARELYNNNLTPGELCLQLLDAGKKFLPDFYRSDL
    QNELDRIWEKQKEYYPEILTDVLKEELRGKKRDAVWAICAKYFVWKENYTEWNKEKGKTEQQER
    EHKLEGIYSKRKRDEAKRENLQWRVNGLKEKLSLEQLVIVFQEMNTQINNSSGYLGAISDRSKE
    LYFNKQTVGQYQMEMLDKNPNASLRNMVFYRQDYLDEFNMLWEKQAVYHKELTEELKKEIRDII
    IFYQRRLKSQKGLIGFCEFESRQIEVDIDGKKKIKTVGNRVISRSSPLFQEFKIWQILNNIEVT
    VVGKKRKRRKLKENYSALFEELNDAEQLELNGSRRLCQEEKELLAQELFIRDKMTKSEVLKLLF
    DNPQELDLNFKTIDGNKTGYALFQAYSKMIEMSGHEPVDFKKPVEKVVEYIKAVFDLLNWNTDI
    LGFNSNEELDNQPYYKLWHLLYSFEGDNTPTGNGRLIQKMTELYGFEKEYATILANVSFQDDYG
    SLSAKAIHKILPHLKEGNRYDVACVYAGYRHSESSLTREEIANKVLKDRLMLLPKNSLHNPVVE
    KILNQMVNVINVIIDIYGKPDEIRVELARELKKNAKEREELTKSIAQTTKAHEEYKTLLQTEFG
    LTNVSRTDILRYKLYKELESCGYKTLYSNTYISREKLFSKEFDIEHIIPQARLFDDSFSNKTLE
    ARSVNIEKGNKTAYDFVKEKFGESGADNSLEHYLNNIEDLFKSGKISKTKYNKLKMAEQDIPDG
    FIERDLRNTQYIAKKALSMLNEISHRVVATSGSVTDKLREDWQLIDVMKELNWEKYKALGLVEY
    FEDRDGRQIGRIKDWTKRNDHRHHAMDALTVAFTKDVFIQYFNNKNASLDPNANEHAIKNKYFQ
    NGRAIAPMPLREFRAEAKKHLENTLISIKAKNKVITGNINKTRKKGGVNKNMQQTPRGQLHLET
    IYGSGKQYLTKEEKVNASFDMRKIGTVSKSAYRDALLKRLYENDNDPKKAFAGKNSLDKQPIWL
    DKEQMRKVPEKVKIVTLEAIYTIRKEISPDLKVDKVIDVGVRKILIDRLNEYGNDAKKAFSNLD
    KNPIWLNKEKGISIKRVTISGISNAQSLHVKKDKDGKPILDENGRNIPVDFVNTGNNHHVAVYY
    RPVIDKRGQLVVDEAGNPKYELEEVVVSFFEAVTRANLGLPIIDKDYKTTEGWQFLFSMKQNEY
    FVFPNEKTGFNPKEIDLLDVENYGLISPNLFRVQKFSLKNYVFRHHLETTIKDTSSILRGITWI
    DFRSSKGLDTIVKVRVNHIGQIVSVGEY
    SEQ ID NO: 308
    MSRKNYVDDYAISLDIGNASVGWSAFTPNYRLVRAKGHELIGVRLFDPADTAESRRMARTTRRR
    YSRRRWRLRLLDALFDQALSEIDPSFLARRKYSWVHPDDENNADCWYGSVLFDSNEQDKRFYEK
    YPTIYHLRKALMEDDSQHDIREIYLAIHHMVKYRGNFLVEGTLESSNAFKEDELLKLLGRITRY
    EMSEGEQNSDIEQDDENKLVAPANGQLADALCATRGSRSMRVDNALEALSAVNDLSREQRAIVK
    AIFAGLEGNKLDLAKIFVSKEFSSENKKILGIYFNKSDYEEKCVQIVDSGLLDDEEREFLDRMQ
    GQYNAIALKQLLGRSTSVSDSKCASYDAHRANWNLIKLQLRTKENEKDINENYGILVGWKIDSG
    QRKSVRGESAYENMRKKANVFFKKMIETSDLSETDKNRLIHDIEEDKLFPIQRDSDNGVIPHQL
    HQNELKQIIKKQGKYYPFLLDAFEKDGKQINKIEGLLTFRVPYFVGPLVVPEDLQKSDNSENHW
    MVRKKKGEITPWNFDEMVDKDASGRKFIERLVGTDSYLLGEPTLPKNSLLYQEYEVLNELNNVR
    LSVRTGNHWNDKRRMRLGREEKTLLCQRLFMKGQTVTKRTAENLLRKEYGRTYELSGLSDESKF
    TSSLSTYGKMCRIFGEKYVNEHRDLMEKIVELQTVFEDKETLLHQLRQLEGISEADCALLVNTH
    YTGWGRLSRKLLTTKAGECKISDDFAPRKHSIIEIMRAEDRNLMEIITDKQLGFSDWIEQENLG
    AENGSSLMEVVDDLRVSPKVKRGIIQSIRLIDDISKAVGKRPSRIFLELADDIQPSGRTISRKS
    RLQDLYRNANLGKEFKGIADELNACSDKDLQDDRLFLYYTQLGKDMYTGEELDLDRLSSAYDID
    HIIPQAVTQNDSIDNRVLVARAENARKTDSFTYMPQIADRMRNFWQILLDNGLISRVKFERLTR
    QNEFSEREKERFVQRSLVETRQIMKNVATLMRQRYGNSAAVIGLNAELTKEMHRYLGFSHKNRD
    INDYHHAQDALCVGIAGQFAANRGFFADGEVSDGAQNSYNQYLRDYLRGYREKLSAEDRKQGRA
    FGFIVGSMRSQDEQKRVNPRTGEVVWSEEDKDYLRKVMNYRKMLVTQKVGDDFGALYDETRYAA
    TDPKGIKGIPFDGAKQDTSLYGGFSSAKPAYAVLIESKGKTRLVNVTMQEYSLLGDRPSDDELR
    KVLAKKKSEYAKANILLRHVPKMQLIRYGGGLMVIKSAGELNNAQQLWLPYEEYCYFDDLSQGK
    GSLEKDDLKKLLDSILGSVQCLYPWHRFTEEELADLHVAFDKLPEDEKKNVITGIVSALHADAK
    TANLSIVGMTGSWRRMNNKSGYTFSDEDEFIFQSPSGLFEKRVTVGELKRKAKKEVNSKYRTNE
    KRLPTLSGASQP
    SEQ ID NO: 309
    METQTSNQLITSHLKDYPKQDYFVGLDIGTNSVGWAVTNTSYELLKFHSHKMWGSRLFEEGESA
    VTRRGFRSMRRRLERRKLRLKLLEELFADAMAQVDSTFFIRLHESKYHYEDKTTGHSSKHILFI
    DEDYTDQDYFTEYPTIYHLRKDLMENGTDDIRKLFLAVHHILKYRGNFLYEGATFNSNAFTFED
    VLKQALVNITFNCFDTNSAISSISNILMESGKTKSDKAKAIERLVDTYTVFDEVNTPDKPQKEQ
    VKEDKKTLKAFANLVLGLSANLIDLFGSVEDIDDDLKKLQIVGDTYDEKRDELAKVWGDEIHII
    DDCKSVYDAIILMSIKEPGLTISQSKVKAFDKHKEDLVILKSLLKLDRNVYNEMFKSDKKGLHN
    YVHYIKQGRTEETSCSREDFYKYTKKIVEGLADSKDKEYILNEIELQTLLPLQRIKDNGVIPYQ
    LHLEELKVILDKCGPKFPFLHTVSDGFSVTEKLIKMLEFRIPYYVGPLNTHHNIDNGGFSWAVR
    KQAGRVTPWNFEEKIDREKSAAAFIKNLTNKCTYLFGEDVLPKSSLLYSEFMLLNELNNVRIDG
    KALAQGVKQHLIDSIFKQDHKKMTKNRIELFLKDNNYITKKHKPEITGLDGEIKNDLTSYRDMV
    RILGNNFDVSMAEDIITDITIFGESKKMLRQTLRNKFGSQLNDETIKKLSKLRYRDWGRLSKKL
    LKGIDGCDKAGNGAPKTIIELMRNDSYNLMEILGDKFSFMECIEEENAKLAQGQVVNPHDIIDE
    LALSPAVKRAVWQALRIVDEVAHIKKALPSRIFVEVARTNKSEKKKKDSRQKRLSDLYSAIKKD
    DVLQSGLQDKEFGALKSGLANYDDAALRSKKLYLYYTQMGRCAYTGNIIDLNQLNTDNYDIDHI
    YPRSLTKDDSFDNLVLCERTANAKKSDIYPIDNRIQTKQKPFWAFLKHQGLISERKYERLTRIA
    PLTADDLSGFIARQLVETNQSVKATTTLLRRLYPDIDVVFVKAENVSDFRHNNNFIKVRSLNHH
    HHAKDAYLNIVVGNVYHEKFTRNFRLFFKKNGANRTYNLAKMFNYDVICTNAQDGKAWDVKTSM
    NTVKKMMASNDVRVTRRLLEQSGALADATIYKASVAAKAKDGAYIGMKTKYSVFADVTKYGGMT
    KIKNAYSIIVQYTGKKGEEIKEIVPLPIYLINRNATDIELIDYVKSVIPKAKDISIKYRKLCIN
    QLVKVNGFYYYLGGKTNDKIYIDNAIELVVPHDIATYIKLLDKYDLLRKENKTLKASSITTSIY
    NINTSTVVSLNKVGIDVFDYFMSKLRTPLYMKMKGNKVDELSSTGRSKFIKMTLEEQSIYLLEV
    LNLLTNSKTTFDVKPLGITGSRSTIGVKIHNLDEFKIINESITGLYSNEVTIV
    SEQ ID NO: 310
    MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLS
    RTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMY
    HLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYP
    DLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLK
    TKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAG
    MSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTK
    EVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQIIANQSKYYDWLAAPNPVE
    AHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREA
    SANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERH
    SSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENII
    TWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLS
    NHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQ
    DPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLY
    FMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGK
    MKATWRKWHEAGLISGRKLRNLMLRPDEIDKFAKGFVARQLVETRQIIKLTEQIAAAQYPNTKI
    IAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVK
    KEREFNFIGALTHAKKNIIAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTI
    YAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKISAQNASKI
    ASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDT
    YYRNYQELWLSRENQKLLKKLFSIKYEKTQMNHDALQVYKAIIDQVEKFFKLYDINQFRAKLSD
    AIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQ
    IVYQSPSGLFKRRIPLADL
    SEQ ID NO: 311
    MTKEYYLGLDVGTNSVGWAVTDSQYNLCKFKKKDMWGIRLFESANTAKDRRLQRGNRRRLERKK
    QRIDLLQEIFSPEICKIDPTFFIRLNESRLHLEDKSNDFKYPLFIEKDYSDIEYYKEFPTIFHL
    RKHLIESEEKQDIRLIYLALHNIIKTRGHFLIDGDLQSAKQLRPILDTFLLSLQEEQNLSVSLS
    ENQKDEYEEILKNRSIAKSEKVKKLKNLFEISDELEKEEKKAQSAVIENFCKFIVGNKGDVCKF
    LRVSKEELEIDSFSFSEGKYEDDIVKNLEEKVPEKVYLFEQMKAMYDWNILVDILETEEYISFA
    KVKQYEKHKTNLRLLRDIILKYCTKDEYNRMFNDEKEAGSYTAYVGKLKKNNKKYWIEKKRNPE
    EFYKSLGKLLDKIEPLKEDLEVLTMMIEECKNHTLLPIQKNKDNGVIPHQVHEVELKKILENAK
    KYYSFLTETDKDGYSVVQKIESIFRFRIPYYVGPLSTRHQEKGSNVWMVRKPGREDRIYPWNME
    EIIDFEKSNENFITRMTNKCTYLIGEDVLPKHSLLYSKYMVLNELNNVKVRGKKLPTSLKQKVF
    EDLFENKSKVTGKNLLEYLQIQDKDIQIDDLSGFDKDFKTSLKSYLDFKKQIFGEEIEKESIQN
    MIEDIIKWITIYGNDKEMLKRVIRANYSNQLTEEQMKKITGFQYSGWGNFSKMFLKGISGSDVS
    TGETEDIITAMWETDNNLMQILSKKETFMDNVEDENSGKVGKIDKITYDSTVKEMELSPENKRA
    VWQTIQVAEEIKKVMGCEPKKIFIEMARGGEKVKKRTKSRKAQLLELYAACEEDCRELIKEIED
    RDERDFNSMKLFLYYTQFGKCMYSGDDIDINELIRGNSKWDRDHIYPQSKIKDDSIDNLVLVNK
    TYNAKKSNELLSEDIQKKMHSFWLSLLNKKLITKSKYDRLTRKGDFTDEELSGFIARQLVETRQ
    STKAIADIFKQIYSSEVVYVKSSLVSDFRKKPLNYLKSRRVNDYHHAKDAYLNIVVGNVYNKKF
    TSNPIQWMKKNRDTNYSLNKVFEHDVVINGEVIWEKCTYHEDTNTYDGGTLDRIRKIVERDNIL
    YTEYAYCEKGELENATIQNKNGNSTVSLKKGLDVKKYGGYFSANTSYFSLIEFEDKKGDRARHI
    IGVPIYIANMLEHSPSAFLEYCEQKGYQNVRILVEKIKKNSLLIINGYPLRIRGENEVDTSFKR
    AIQLKLDQKNYELVRNIEKFLEKYVEKKGNYPIDENRDHITHEKMNQLYEVLLSKMKKFNKKGM
    ADPSDRIEKSKPKFIKLEDLIDKINVINKMLNLLRCDNDTKADLSLIELPKNAGSFVVKKNTIG
    KSKIILVNQSVTGLYENRREL
    SEQ ID NO: 312
    MARDYSVGLDIGTSSVGWAAIDNKYHLIRAKSKNLIGVRLFDSAVTAEKRRGYRTTRRRLSRRH
    WRLRLLNDIFAGPLTDFGDENFLARLKYSWVHPQDQSNQAHFAAGLLFDSKEQDKDFYRKYPTI
    YHLRLALMNDDQKHDLREVYLAIHHLVKYRGHFLIEGDVKADSAFDVHTFADAIQRYAESNNSD
    ENLLGKIDEKKLSAALTDKHGSKSQRAETAETAFDILDLQSKKQIQAILKSVVGNQANLMAIFG
    LDSSAISKDEQKNYKFSFDDADIDEKIADSEALLSDTEFEFLCDLKAAFDGLTLKMLLGDDKTV
    SAAMVRRFNEHQKDWEYIKSHIRNAKNAGNGLYEKSKKFDGINAAYLALQSDNEDDRKKAKKIF
    QDEISSADIPDDVKADFLKKIDDDQFLPIQRTKNNGTIPHQLHRNELEQIIEKQGIYYPFLKDT
    YQENSHELNKITALINFRVPYYVGPLVEEEQKIADDGKNIPDPTNHWMVRKSNDTITPWNLSQV
    VDLDKSGRRFIERLTGTDTYLIGEPTLPKNSLLYQKFDVLQELNNIRVSGRRLDIRAKQDAFEH
    LFKVQKTVSATNLKDFLVQAGYISEDTQIEGLADVNGKNFNNALTTYNYLVSVLGREFVENPSN
    EELLEEITELQTVFEDKKVLRRQLDQLDGLSDHNREKLSRKHYTGWGRISKKLLTTKIVQNADK
    IDNQTFDVPRMNQSIIDTLYNTKMNLMEIINNAEDDFGVRAWIDKQNTTDGDEQDVYSLIDELA
    GPKEIKRGIVQSFRILDDITKAVGYAPKRVYLEFARKTQESHLTNSRKNQLSTLLKNAGLSELV
    TQVSQYDAAALQNDRLYLYFLQQGKDMYSGEKLNLDNLSNYDIDHIIPQAYTKDNSLDNRVLVS
    NITNRRKSDSSNYLPALIDKMRPFWSVLSKQGLLSKHKFANLTRTRDFDDMEKERFIARSLVET
    RQIIKNVASLIDSHFGGETKAVAIRSSLTADMRRYVDIPKNRDINDYHHAFDALLESTVGQYTE
    NSGLMKKGQLSDSAGNQYNRYIKEWIHAARLNAQSQRVNPFGFVVGSMRNAAPGKLNPETGEIT
    PEENADWSIADLDYLHKVMNFRKITVTRRLKDQKGQLYDESRYPSVLHDAKSKASINFDKHKPV
    DLYGGFSSAKPAYAALIKFKNKFRLVNVLRQWTYSDKNSEDYILEQIRGKYPKAEMVLSHIPYG
    QLVKKDGALVTISSATELHNFEQLWLPLADYKLINTLLKTKEDNLVDILHNRLDLPEMTIESAF
    YKAFDSILSFAFNRYALHQNALVKLQAHRDDFNALNYEDKQQTLERILDALHASPASSDLKKIN
    LSSGFGRLFSPSHFTLADTDEFIFQSVTGLFSTQKTVAQLYQETK
    SEQ ID NO: 313
    MVYDVGLDIGTGSVGWVALDENGKLARAKGKNLVGVRLFDTAQTAADRRGFRTTRRRLSRRKWR
    LRLLDELFSAEINEIDSSFFQRLKYSYVHPKDEENKAHYYGGYLFPTEEETKKFHRSYPTIYHL
    RQELMAQPNKRFDIREIYLAIHHLVKYRGHFLSSQEKITIGSTYNPEDLANAIEVYADEKGLSW
    ELNNPEQLTEIISGEAGYGLNKSMKADEALKLFEFDNNQDKVAIKTLLAGLTGNQIDFAKLFGK
    DISDKDEAKLWKLKLDDEALEEKSQTILSQLTDEEIELFHAVVQAYDGFVLIGLLNGADSVSAA
    MVQLYDQHREDRKLLKSLAQKAGLKHKRFSEIYEQLALATDEATIKNGISTARELVEESNLSKE
    VKEDTLRRLDENEFLPKQRTKANSVIPHQLHLAELQKILQNQGQYYPFLLDTFEKEDGQDNKIE
    ELLRFRIPYYVGPLVTKKDVEHAGGDADNHWVERNEGFEKSRVTPWNFDKVFNRDKAARDFIER
    LTGNDTYLIGEKTLPQNSLRYQLFTVLNELNNVRVNGKKFDSKTKADLINDLFKARKTVSLSAL
    KDYLKAQGKGDVTITGLADESKFNSSLSSYNDLKKTFDAEYLENEDNQETLEKIIEIQTVFEDS
    KIASRELSKLPLDDDQVKKLSQTHYTGWGRLSEKLLDSKIIDERGQKVSILDKLKSTSQNFMSI
    INNDKYGVQAWITEQNTGSSKLTFDEKVNELTTSPANKRGIKQSFAVLNDIKKAMKEEPRRVYL
    EFAREDQTSVRSVPRYNQLKEKYQSKSLSEEAKVLKKTLDGNKNKMSDDRYFLYFQQQGKDMYT
    GRPINFERLSQDYDIDHIIPQAFTKDDSLDNRVLVSRPENARKSDSFAYTDEVQKQDGSLWTSL
    LKSGFINRKKYERLTKAGKYLDGQKTGFIARQLVETRQIIKNVASLIEGEYENSKAVAIRSEIT
    ADMRLLVGIKKHREINSFHHAFDALLITAAGQYMQNRYPDRDSTNVYNEFDRYTNDYLKNLRQL
    SSRDEVRRLKSFGEVVGTMRKGNEDWSEENTSYLRKVMMFKNILTTKKTEKDRGPLNKETIFSP
    KSGKKLIPLNSKRSDTALYGGYSNVYSAYMTLVRANGKNLLIKIPISIANQIEVGNLKINDYIV
    NNPAIKKFEKILISKLPLGQLVNEDGNLIYLASNEYRHNAKQLWLSTTDADKIASISENSSDEE
    LLEAYDILTSENVKNRFPFFKKDIDKLSQVRDEFLDSDKRIAVIQTILRGLQIDAAYQAPVKII
    SKKVSDWHKLQQSGGIKLSDNSEMIYQSATGIFETRVKISDLL
    SEQ ID NO: 314
    IVDYCIGLDLGTGSVGWAVVDMNHRLMKRNGKHLWGSRLFSNAETAANRRASRSIRRRYNKRRE
    RIRLLRAILQDMVLEKDPTFFIRLEHTSFLDEEDKAKYLGTDYKDNYNLFIDEDFNDYTYYHKY
    PTIYHLRKALCESTEKADPRLIYLALHHIVKYRGNFLYEGQKFNMDASNIEDKLSDIFTQFTSF
    NNIPYEDDEKKNLEILEILKKPLSKKAKVDEVMTLIAPEKDYKSAFKELVTGIAGNKMNVTKMI
    LCEPIKQGDSEIKLKFSDSNYDDQFSEVEKDLGEYVEFVDALHNVYSWVELQTIMGATHTDNAS
    ISEAMVSRYNKHHDDLKLLKDCIKNNVPNKYFDMFRNDSEKSKGYYNYINRPSKAPVDEFYKYV
    KKCIEKVDTPEAKQILNDIELENFLLKQNSRTNGSVPYQMQLDEMIKIIDNQAEYYPILKEKRE
    QLLSILTFRIPYYFGPLNETSEHAWIKRLEGKENQRILPWNYQDIVDVDATAEGFIKRMRSYCT
    YFPDEEVLPKNSLIVSKYEVYNELNKIRVDDKLLEVDVKNDIYNELFMKNKTVTEKKLKNWLVN
    NQCCSKDAEIKGFQKENQFSTSLTPWIDFTNIFGKIDQSNFDLIENIIYDLTVFEDKKIMKRRL
    KKKYALPDDKVKQILKLKYKDWSRLSKKLLDGIVADNRFGSSVTVLDVLEMSRLNLMEIINDKD
    LGYAQMIEEATSCPEDGKFTYEEVERLAGSPALKRGIWQSLQIVEEITKVMKCRPKYIYIEFER
    SEEAKERTESKIKKLENVYKDLDEQTKKEYKSVLEELKGFDNTKKISSDSLFLYFTQLGKCMYS
    GKKLDIDSLDKYQIDHIVPQSLVKDDSFDNRVLVVPSENQRKLDDLVVPFDIRDKMYRFWKLLF
    DHELISPKKFYSLIKTEYTERDEERFINRQLVETRQITKNVTQIIEDHYSTTKVAAIRANLSHE
    FRVKNHIYKNRDINDYHHAHDAYIVALIGGFMRDRYPNMHDSKAVYSEYMKMFRKNKNDQKRWK
    DGFVINSMNYPYEVDGKLIWNPDLINEIKKCFYYKDCYCTTKLDQKSGQLFNLTVLSNDAHADK
    GVTKAVVPVNKNRSDVHKYGGFSGLQYTIVAIEGQKKKGKKTELVKKISGVPLHLKAASINEKI
    NYIEEKEGLSDVRIIKDNIPVNQMIEMDGGEYLLTSPTEYVNARQLVLNEKQCALIADIYNAIY
    KQDYDNLDDILMIQLYIELTNKMKVLYPAYRGIAEKFESMNENYVVISKEEKANIIKQMLIVMH
    RGPQNGNIVYDDFKISDRIGRLKTKNHNLNNIVFISQSPTGIYTKKYKL
    SEQ ID NO: 315
    MKSEKKYYIGLDVGTNSVGWAVTDEFYNILRAKGKDLWGVRLFEKADTAANTRIFRSGRRRNDR
    KGMRLQILREIFEDEIKKVDKDFYDRLDESKFWAEDKKVSGKYSLFNDKNFSDKQYFEKFPTIF
    HLRKYLMEEHGKVDIRYYFLAINQMMKRRGHFLIDGQISHVTDDKPLKEQLILLINDLLKIELE
    EELMDSIEEILADVNEKRTDKKNNLKELIKGQDFNKQEGNILNSIEESIVTGKAKIKNIISDED
    ILEKIKEDNKEDFVLTGDSYEENLQYFEEVLQENITLFNTLKSTYDFLILQSILKGKSTLSDAQ
    VERYDEHKKDLEILKKVIKKYDEDGKLFKQVFKEDNGNGYVSYIGYYLNKNKKITAKKKISNIE
    FTKYVKGILEKQCDCEDEDVKYLLGKIEQENFLLKQISSINSVIPHQIHLFELDKILENLAKNY
    PSFNNKKEEFTKIEKIRKTFTFRIPYYVGPLNDYHKNNGGNAWIFRNKGEKIRPWNFEKIVDLH
    KSEEEFIKRMLNQCTYLPEETVLPKSSILYSEYMVLNELNNLRINGKPLDTDVKLKLIEELFKK
    KTKVTLKSIRDYMVRNNFADKEDFDNSEKNLEIASNMKSYIDFNNILEDKFDVEMVEDLIEKIT
    IHTGNKKLLKKYIEETYPDLSSSQIQKIINLKYKDWGRLSRKLLDGIKGTKKETEKTDTVINFL
    RNSSDNLMQIIGSQNYSFNEYIDKLRKKYIPQEISYEVVENLYVSPSVKKMIWQVIRVTEEITK
    VMGYDPDKIFIEMAKSEEEKKTTISRKNKLLDLYKAIKKDERDSQYEKLLTGLNKLDDSDLRSR
    KLYLYYTQMGRDMYTGEKIDLDKLFDSTHYDKDHIIPQSMKKDDSIINNLVLVNKNANQTTKGN
    IYPVPSSIRNNPKIYNYWKYLMEKEFISKEKYNRLIRNTPLTNEELGGFINRQLVETRQSTKAI
    KELFEKFYQKSKIIPVKASLASDLRKDMNTLKSREVNDLHHAHDAFLNIVAGDVWNREFTSNPI
    NYVKENREGDKVKYSLSKDFTRPRKSKGKVIWTPEKGRKLIVDTLNKPSVLISNESHVKKGELF
    NATIAGKKDYKKGKIYLPLKKDDRLQDVSKYGGYKAINGAFFFLVEHTKSKKRIRSIELEPLHL
    LSKFYEDKNTVLDYAINVLQLQDPKIIIDKINYRTEIIIDNFSYLISTKSNDGSITVKPNEQMY
    WRVDEISNLKKIENKYKKDAILTEEDRKIMESYIDKIYQQFKAGKYKNRRTTDTIIEKYEIIDL
    DTLDNKQLYQLLVAFISLSYKTSNNAVDFTVIGLGTECGKPRITNLPDNTYLVYKSITGIYEKR
    IRIK
    SEQ ID NO: 316
    MKLRGIEDDYSIGLDMGTSSVGWAVTDERGTLAHFKRKPTWGSRLFREAQTAAVARMPRGQRRR
    YVRRRWRLDLLQKLFEQQMEQADPDFFIRLRQSRLLRDDRAEEHADYRWPLFNDCKFTERDYYQ
    RFPTIYHVRSWLMETDEQADIRLIYLALHNIVKHRGNFLREGQSLSAKSARPDEALNHLRETLR
    VWSSERGFECSIADNGSILAMLTHPDLSPSDRRKKIAPLFDVKSDDAAADKKLGIALAGAVIGL
    KTEFKNIFGDFPCEDSSIYLSNDEAVDAVRSACPDDCAELFDRLCEVYSAYVLQGLLSYAPGQT
    ISANMVEKYRRYGEDLALLKKLVKIYAPDQYRMFFSGATYPGTGIYDAAQARGYTKYNLGPKKS
    EYKPSESMQYDDFRKAVEKLFAKTDARADERYRMMMDRFDKQQFLRRLKTSDNGSIYHQLHLEE
    LKAIVENQGRFYPFLKRDADKLVSLVSFRIPYYVGPLSTRNARTDQHGENRFAWSERKPGMQDE
    PIFPWNWESIIDRSKSAEKFILRMTGMCTYLQQEPVLPKSSLLYEEFCVLNELNGAHWSIDGDD
    EHRFDAADREGIIEELFRRKRTVSYGDVAGWMERERNQIGAHVCGGQGEKGFESKLGSYIFECK
    DVFKVERLEQSDYPMIERIILWNTLFEDRKILSQRLKEEYGSRLSAEQIKTICKKRFTGWGRLS
    EKFLTGITVQVDEDSVSIMDVLREGCPVSGKRGRAMVMMEILRDEELGFQKKVDDFNRAFFAEN
    AQALGVNELPGSPAVRRSLNQSIRIVDEIASIAGKAPANIFIEVTRDEDPKKKGRRTKRRYNDL
    KDALEAFKKEDPELWRELCETAPNDMDERLSLYFMQRGKCLYSGRAIDIHQLSNAGIYEVDHII
    PRTYVKDDSLENKALVYREENQRKTDMLLIDPEIRRRMSGYWRMLHEAKLIGDKKFRNLLRSRI
    DDKALKGFIARQLVETGQMVKLVRSLLEARYPETNIISVKASISHDLRTAAELVKCREANDFHH
    AHDAFLACRVGLFIQKRHPCVYENPIGLSQVVRNYVRQQADIFKRCRTIPGSSGFIVNSFMTSG
    FDKETGEIFKDDWDAEAEVEGIRRSLNFRQCFISRMPFEDHGVFWDATIYSPRAKKTAALPLKQ
    GLNPSRYGSFSREQFAYFFIYKARNPRKEQTLFEFAQVPVRLSAQIRQDENALERYARELAKDQ
    GLEFIRIERSKILKNQLIEIDGDRLCITGKEEVRNACELAFAQDEMRVIRMLVSEKPVSRECVI
    SLFNRILLHGDQASRRLSKQLKLALLSEAFSEASDNVQRNVVLGLIAIFNGSTNMVNLSDIGGS
    KFAGNVRIKYKKELASPKVNVHLIDQSVTGMFERRTKIGL
    SEQ ID NO: 317
    MENKQYYIGLDVGTNSVGWAVTDTSYNLLRAKGKDMWGARLFEKANTAAERRTKRTSRRRSERE
    KARKAMLKELFADEINRVDPSFFIRLEESKFFLDDRSENNRQRYTLFNDATFTDKDYYEKYKTI
    FHLRSALINSDEKFDVRLVFLAILNLFSHRGHFLNASLKGDGDIQGMDVFYNDLVESCEYFEIE
    LPRITNIDNFEKILSQKGKSRTKILEELSEELSISKKDKSKYNLIKLISGLEASVVELYNIEDI
    QDENKKIKIGFRESDYEESSLKVKEIIGDEYFDLVERAKSVHDMGLLSNIIGNSKYLCEARVEA
    YENHHKDLLKIKELLKKYDKKAYNDMFRKMTDKNYSAYVGSVNSNIAKERRSVDKRKIEDLYKY
    IEDTALKNIPDDNKDKIEILEKIKLGEFLKKQLTASNGVIPNQLQSRELRAILKKAENYLPFLK
    EKGEKNLTVSEMIIQLFEFQIPYYVGPLDKNPKKDNKANSWAKIKQGGRILPWNFEDKVDVKGS
    RKEFIEKMVRKCTYISDEHTLPKQSLLYEKFMVLNEINNIKIDGEKISVEAKQKIYNDLFVKGK
    KVSQKDIKKELISLNIMDKDSVLSGTDTVCNAYLSSIGKFTGVFKEEINKQSIVDMIEDIIFLK
    TVYGDEKRFVKEEIVEKYGDEIDKDKIKRILGFKFSNWGNLSKSFLELEGADVGTGEVRSIIQS
    LWETNFNLMELLSSRFTYMDELEKRVKKLEKPLSEWTIEDLDDMYLSSPVKRMIWQSMKIVDEI
    QTVIGYAPKRIFVEMTRSEGEKVRTKSRKDRLKELYNGIKEDSKQWVKELDSKDESYFRSKKMY
    LYYLQKGRCMYSGEVIELDKLMDDNLYDIDHIYPRSFVKDDSLDNLVLVKKEINNRKQNDPITP
    QIQASCQGFWKILHDQGFMSNEKYSRLTRKTQEFSDEEKLSFINRQIVETGQATKCMAQILQKS
    MGEDVDVVFSKARLVSEFRHKFELFKSRLINDFHHANDAYLNIVVGNSYFVKFTRNPANFIKDA
    RKNPDNPVYKYHMDRFFERDVKSKSEVAWIGQSEGNSGTIVIVKKTMAKNSPLITKKVEEGHGS
    ITKETIVGVKEIKFGRNKVEKADKTPKKPNLQAYRPIKTSDERLCNILRYGGRTSISISGYCLV
    EYVKKRKTIRSLEAIPVYLGRKDSLSEEKLLNYFRYNLNDGGKDSVSDIRLCLPFISTNSLVKI
    DGYLYYLGGKNDDRIQLYNAYQLKMKKEEVEYIRKIEKAVSMSKFDEIDREKNPVLTEEKNIEL
    YNKIQDKFENTVFSKRMSLVKYNKKDLSFGDFLKNKKSKFEEIDLEKQCKVLYNIIFNLSNLKE
    VDLSDIGGSKSTGKCRCKKNITNYKEFKLIQQSITGLYSCEKDLMTI
    SEQ ID NO: 318
    MKNLKEYYIGLDIGTASVGWAVTDESYNIPKFNGKKMWGVRLFDDAKTAEERRTQRGSRRRLNR
    RKERINLLQDLFATEISKVDPNFFLRLDNSDLYREDKDEKLKSKYTLFNDKDFKDRDYHKKYPT
    IHHLIMDLIEDEGKKDIRLLYLACHYLLKNRGHFIFEGQKFDTKNSFDKSINDLKIHLRDEYNI
    DLEFNNEDLIEIITDTTLNKTNKKKELKNIVGDTKFLKAISAIMIGSSQKLVDLFEDGEFEETT
    VKSVDFSTTAFDDKYSEYEEALGDTISLLNILKSIYDSSILENLLKDADKSKDGNKYISKAFVK
    KFNKHGKDLKTLKRIIKKYLPSEYANIFRNKSINDNYVAYTKSNITSNKRTKASKFTKQEDFYK
    FIKKHLDTIKETKLNSSENEDLKLIDEMLTDIEFKTFIPKLKSSDNGVIPYQLKLMELKKILDN
    QSKYYDFLNESDEYGTVKDKVESIMEFRIPYYVGPLNPDSKYAWIKRENTKITPWNFKDIVDLD
    SSREEFIDRLIGRCTYLKEEKVLPKASLIYNEFMVLNELNNLKLNEFLITEEMKKAIFEELFKT
    KKKVTLKAVSNLLKKEFNLTGDILLSGTDGDFKQGLNSYIDFKNIIGDKVDRDDYRIKIEEIIK
    LIVLYEDDKTYLKKKIKSAYKNDFTDDEIKKIAALNYKDWGRLSKRFLTGIEGVDKTTGEKGSI
    IYFMREYNLNLMELMSGHYTFTEEVEKLNPVENRELCYEMVDELYLSPSVKRMLWQSLRVVDEI
    KRIIGKDPKKIFIEMARAKEAKNSRKESRKNKLLEFYKFGKKAFINEIGEERYNYLLNEINSEE
    ESKFRWDNLYLYYTQLGRCMYSLEPIDLADLKSNNIYDQDHIYPKSKIYDDSLENRVLVKKNLN
    HEKGNQYPIPEKVLNKNAYGFWKILFDKGLIGQKKYTRLTRRTPFEERELAEFIERQIVETRQA
    TKETANLLKNICQDSEIVYSKAENASRFRQEFDIIKCRTVNDLHHMHDAYLNIVVGNVYNTKFT
    KNPLNFIKDKDNVRSYNLENMFKYDVVRGSYTAWIADDSEGNVKAATIKKVKRELEGKNYRFTR
    MSYIGTGGLYDQNLMRKGKGQIPQKENTNKSNIEKYGGYNKASSAYFALIESDGKAGRERTLET
    IPIMVYNQEKYGNTEAVDKYLKDNLELQDPKILKDKIKINSLIKLDGFLYNIKGKTGDSLSIAG
    SVQLIVNKEEQKLIKKMDKFLVKKKDNKDIKVTSFDNIKEEELIKLYKTLSDKLNNGIYSNKRN
    NQAKNISEALDKFKEISIEEKIDVLNQIILLFQSYNNGCNLKSIGLSAKTGVVFIPKKLNYKEC
    KLINQSITGLFENEVDLLNL
    SEQ ID NO: 319
    MGKMYYLGLDIGTNSVGYAVTDPSYHLLKFKGEPMWGAHVFAAGNQSAERRSFRTSRRRLDRRQ
    QRVKLVQEIFAPVISPIDPRFFIRLHESALWRDDVAETDKHIFFNDPTYTDKEYYSDYPTIHHL
    IVDLMESSEKHDPRLVYLAVAWLVAHRGHFLNEVDKDNIGDVLSFDAFYPEFLAFLSDNGVSPW
    VCESKALQATLLSRNSVNDKYKALKSLIFGSQKPEDNFDANISEDGLIQLLAGKKVKVNKLFPQ
    ESNDASFTLNDKEDAIEEILGTLTPDECEWIAHIRRLFDWAIMKHALKDGRTISESKVKLYEQH
    HHDLTQLKYFVKTYLAKEYDDIFRNVDSETTKNYVAYSYHVKEVKGTLPKNKATQEEFCKYVLG
    KVKNIECSEADKVDFDEMIQRLTDNSFMPKQVSGENRVIPYQLYYYELKTILNKAASYLPFLTQ
    CGKDAISNQDKLLSIMTFRIPYFVGPLRKDNSEHAWLERKAGKIYPWNFNDKVDLDKSEEAFIR
    RMTNTCTYYPGEDVLPLDSLIYEKFMILNEINNIRIDGYPISVDVKQQVFGLFEKKRRVTVKDI
    QNLLLSLGALDKHGKLTGIDTTIHSNYNTYHHFKSLMERGVLTRDDVERIVERMTYSDDTKRVR
    LWLNNNYGTLTADDVKHISRLRKHDFGRLSKMFLTGLKGVHKETGERASILDFMWNTNDNLMQL
    LSECYTFSDEITKLQEAYYAKAQLSLNDFLDSMYISNAVKRPIYRTLAVVNDIRKACGTAPKRI
    FIEMARDGESKKKRSVTRREQIKNLYRSIRKDFQQEVDFLEKILENKSDGQLQSDALYLYFAQL
    GRDMYTGDPIKLEHIKDQSFYNIDHIYPQSMVKDDSLDNKVLVQSEINGEKSSRYPLDAAIRNK
    MKPLWDAYYNHGLISLKKYQRLTRSTPFTDDEKWDFINRQLVETRQSTKALAILLKRKFPDTEI
    VYSKAGLSSDFRHEFGLVKSRNINDLHHAKDAFLAIVTGNVYHERFNRRWEMVNQPYSVKTKTL
    FTHSIKNGNFVAWNGEEDLGRIVKMLKQNKNTIHFTRFSFDRKEGLFDIQPLKASTGLVPRKAG
    LDVVKYGGYDKSTAAYYLLVRFTLEDKKTQHKLMMIPVEGLYKARIDHDKEFLTDYAQTTISEI
    LQKDKQKVINIMFPMGTRHIKLNSMISIDGFYLSIGGKSSKGKSVLCHAMVPLIVPHKIECYIK
    AMESFARKFKENNKLRIVEKFDKITVEDNLNLYELFLQKLQHNPYNKFFSTQFDVLTNGRSTFT
    KLSPEEQVQTLLNILSIFKTCRSSGCDLKSINGSAQAARIMISADLTGLSKKYSDIRLVEQSAS
    GLFVSKSQNLLEYL
    SEQ ID NO: 320
    MTKKEQPYNIGLDIGTSSVGWAVTNDNYDLLNIKKKNLWGVRLFEEAQTAKETRLNRSTRRRYR
    RRKNRINWLNEIFSEELAKTDPSFLIRLQNSWVSKKDPDRKRDKYNLFIDGPYTDKEYYREFPT
    IFHLRKELILNKDKADIRLIYLALHNILKYRGNFTYEHQKFNISNLNNNLSKELIELNQQLIKY
    DISFPDDCDWNHISDILIGRGNATQKSSNILKDFTLDKETKKLLKEVINLILGNVAHLNTIFKT
    SLTKDEEKLNFSGKDIESKLDDLDSILDDDQFTVLDAANRIYSTITLNEILNGESYFSMAKVNQ
    YENHAIDLCKLRDMWHTTKNEEAVEQSRQAYDDYINKPKYGTKELYTSLKKFLKVALPTNLAKE
    AEEKISKGTYLVKPRNSENGVVPYQLNKIEMEKIIDNQSQYYPFLKENKEKLLSILSFRIPYYV
    GPLQSAEKNPFAWMERKSNGHARPWNFDEIVDREKSSNKFIRRMTVTDSYLVGEPVLPKNSLIY
    QRYEVLNELNNIRITENLKTNPIGSRLTVETKQRIYNELFKKYKKVTVKKLTKWLIAQGYYKNP
    ILIGLSQKDEFNSTLTTYLDMKKIFGSSFMEDNKNYDQIEELIEWLTIFEDKQILNEKLHSSKY
    SYTPDQIKKISNMRYKGWGRLSKKILMDITTETNTPQLLQLSNYSILDLMWATNNNFISIMSND
    KYDFKNYIENHNLNKNEDQNISDLVNDIHVSPALKRGITQSIKIVQEIVKFMGHAPKHIFIEVT
    RETKKSEITTSREKRIKRLQSKLLNKANDFKPQLREYLVPNKKIQEELKKHKNDLSSERIMLYF
    LQNGKSLYSEESLNINKLSDYQVDHILPRTYIPDDSLENKALVLAKENQRKADDLLLNSNVIDR
    NLERWTYMLNNNMIGLKKFKNLTRRVITDKDKLGFIHRQLVQTSQMVKGVANILDNMYKNQGTT
    CIQARANLSTAFRKALSGQDDTYHFKHPELVKNRNVNDFHHAQDAYLASFLGTYRLRRFPTNEM
    LLMNGEYNKFYGQVKELYSKKKKLPDSRKNGFIISPLVNGTTQYDRNTGEIIWNVGFRDKILKI
    FNYHQCNVTRKTEIKTGQFYDQTIYSPKNPKYKKLIAQKKDMDPNIYGGFSGDNKSSITIVKID
    NNKIKPVAIPIRLINDLKDKKTLQNWLEENVKHKKSIQIIKNNVPIGQIIYSKKVGLLSLNSDR
    EVANRQQLILPPEHSALLRLLQIPDEDLDQILAFYDKNILVEILQELITKMKKFYPFYKGEREF
    LIANIENFNQATTSEKVNSLEELITLLHANSTSAHLIFNNIEKKAFGRKTHGLTLNNTDFIYQS
    VTGLYETRIHIE
    SEQ ID NO: 321
    MTKFNKNYSIGLDIGVSSVGYAVVTEDYRVPAFKFKVLGNTEKEKIKKNLIGSTTFVSAQPAKG
    TRVFRVNRRRIDRRNHRITYLRDIFQKEIEKVDKNFYRRLDESFRVLGDKSEDLQIKQPFFGDK
    ELETAYHKKYPTIYHLRKHLADADKNSPVADIREVYMAISHILKYRGHFLTLDKINPNNINMQN
    SWIDFIESCQEVFDLEISDESKNIADIFKSSENRQEKVKKILPYFQQELLKKDKSIFKQLLQLL
    FGLKTKFKDCFELEEEPDLNFSKENYDENLENFLGSLEEDFSDVFAKLKVLRDTILLSGMLTYT
    GATHARFSATMVERYEEHRKDLQRFKFFIKQNLSEQDYLDIFGRKTQNGFDVDKETKGYVGYIT
    NKMVLTNPQKQKTIQQNFYDYISGKITGIEGAEYFLNKISDGTFLRKLRTSDNGAIPNQIHAYE
    LEKIIERQGKDYPFLLENKDKLLSILTFKIPYYVGPLAKGSNSRFAWIKRATSSDILDDNDEDT
    RNGKIRPWNYQKLINMDETRDAFITNLIGNDIILLNEKVLPKRSLIYEEVMLQNELTRVKYKDK
    YGKAHEFDSELRQNIINGLFKNNSKRVNAKSLIKYLSDNHKDLNAIEIVSGVEKGKSFNSTLKT
    YNDLKTIFSEELLDSEIYQKELEEIIKVITVFDDKKSIKNYLTKFFGHLEILDEEKINQLSKLR
    YSGWGRYSAKLLLDIRDEDTGFNLLQFLRNDEENRNLTKLISDNTLSFEPKIKDIQSKSTIEDD
    IFDEIKKLAGSPAIKRGILNSIKIVDELVQIIGYPPHNIVIEMARENMTTEEGQKKAKTRKTKL
    ESALKNIENSLLENGKVPHSDEQLQSEKLYLYYLQNGKDMYTLDKTGSPAPLYLDQLDQYEVDH
    IIPYSFLPIDSIDNKVLTHRENNQQKLNNIPDKETVANMKPFWEKLYNAKLISQTKYQRLTTSE
    RTPDGVLTESMKAGFIERQLVETRQIIKHVARILDNRFSDTKIITLKSQLITNFRNTFHIAKIR
    ELNDYHHAHDAYLAVVVGQTLLKVYPKLAPELIYGHHAHFNRHEENKATLRKHLYSNIMRFFNN
    PDSKVSKDIWDCNRDLPIIKDVIYNSQINFVKRTMIKKGAFYNQNPVGKFNKQLAANNRYPLKT
    KALCLDTSIYGGYGPMNSALSIIIIAERFNEKKGKIETVKEFHDIFIIDYEKFNNNPFQFLNDT
    SENGFLKKNNINRVLGFYRIPKYSLMQKIDGTRMLFESKSNLHKATQFKLTKTQNELFFHMKRL
    LTKSNLMDLKSKSAIKESQNFILKHKEEFDNISNQLSAFSQKMLGNTTSLKNLIKGYNERKIKE
    IDIRDETIKYFYDNFIKMFSFVKSGAPKDINDFFDNKCTVARMRPKPDKKLLNATLIHQSITGL
    YETRIDLSKLGED
    SEQ ID NO: 322
    MKQEYFLGLDMGTGSLGWAVTDSTYQVMRKHGKALWGTRLFESASTAEERRMFRTARRRLDRRN
    WRIQVLQEIFSEEISKVDPGFFLRMKESKYYPEDKRDAEGNCPELPYALFVDDNYTDKNYHKDY
    PTIYHLRKMLMETTEIPDIRLVYLVLHHMMKHRGHFLLSGDISQIKEFKSTFEQLIQNIQDEEL
    EWHISLDDAAIQFVEHVLKDRNLTRSTKKSRLIKQLNAKSACEKAILNLLSGGTVKLSDIFNNK
    ELDESERPKVSFADSGYDDYIGIVEAELAEQYYIIASAKAVYDWSVLVEILGNSVSISEAKIKV
    YQKHQADLKTLKKIVRQYMTKEDYKRVFVDTEEKLNNYSAYIGMTKKNGKKVDLKSKQCTQADF
    YDFLKKNVIKVIDHKEITQEIESEIEKENFLPKQVTKDNGVIPYQVHDYELKKILDNLGTRMPF
    IKENAEKIQQLFEFRIPYYVGPLNRVDDGKDGKFTWSVRKSDARIYPWNFTEVIDVEASAEKFI
    RRMTNKCTYLVGEDVLPKDSLVYSKFMVLNELNNLRLNGEKISVELKQRIYEELFCKYRKVTRK
    KLERYLVIEGIAKKGVEITGIDGDFKASLTAYHDFKERLTDVQLSQRAKEAIVLNVVLFGDDKK
    LLKQRLSKMYPNLTTGQLKGICSLSYQGWGRLSKTFLEEITVPAPGTGEVWNIMTALWQTNDNL
    MQLLSRNYGFTNEVEEFNTLKKETDLSYKTVDELYVSPAVKRQIWQTLKVVKEIQKVMGNAPKR
    VFVEMAREKQEGKRSDSRKKQLVELYRACKNEERDWITELNAQSDQQLRSDKLFLYYIQKGRCM
    YSGETIQLDELWDNTKYDIDHIYPQSKTMDDSLNNRVLVKKNYNAIKSDTYPLSLDIQKKMMSF
    WKMLQQQGFITKEKYVRLVRSDELSADELAGFIERQIVETRQSTKAVATILKEALPDTEIVYVK
    AGNVSNFRQTYELLKVREMNDLHHAKDAYLNIVVGNAYFVKFTKNAAWFIRNNPGRSYNLKRMF
    EEDIERSGEIAWKAGNKGSIVTVKKVMQKNNILVTRKAYEVKGGLFDQQIMKKGKGQVPIKGND
    ERLADIEKYGGYNKAAGTYFMLVKSLDKKGKEIRTIEFVPLYLKNQIEINHESAIQYLAQERGL
    NSPEILLSKIKIDTLFKVDGFKMWLSGRTGNQLIFKGANQLILSHQEAAILKGVVKYVNRKNEN
    KDAKLSERDGMTEEKLLQLYDTFLDKLSNTVYSIRLSAQIKTLTEKRAKFIGLSNEDQCIVLNE
    ILHMFQCQSGSANLKLIGGPGSAGILVMNNNITACKQISVINQSPTGIYEKEIDLIKL
    SEQ ID NO: 323
    MKKPYSIGLDIGTNSVGWAVVTDDYKVPAKKMKVLGNTDKSHIEKNLLGALLFDSGNTAEDRRL
    KRTARRRYTRRRNRILYLQEIFSEEMGKVDDSFFHRLEDSFLVTEDKRGERHPIFGNLEEEVKY
    HENFPTIYHLRQYLADNPEKVDLRLVYLALAHIIKFRGHFLIEGKFDTRNNDVQRLFQEFLAVY
    DNTFENSSLQEQNVQVEEILTDKISKSAKKDRVLKLFPNEKSNGRFAEFLKLIVGNQADFKKHF
    ELEEKAPLQFSKDTYEEELEVLLAQIGDNYAELFLSAKKLYDSILLSGILTVTDVGTKAPLSAS
    MIQRYNEHQMDLAQLKQFIRQKLSDKYNEVFSDVSKDGYAGYIDGKTNQEAFYKYLKGLLNKIE
    GSGYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMRAIIRRQAEFYPFLADNQDRIEKLLTFRI
    PYYVGPLARGKSDFAWLSRKSADKITPWNFDEIVDKESSAEAFINRMTNYDLYLPNQKVLPKHS
    LLYEKFTVYNELTKVKYKTEQGKTAFFDANMKQEIFDGVFKVYRKVTKDKLMDFLEKEFDEFRI
    VDLTGLDKENKVFNASYGTYHDLCKILDKDFLDNSKNEKILEDIVLTLTLFEDREMIRKRLENY
    SDLLTKEQVKKLERRHYTGWGRLSAELIHGIRNKESRKTILDYLIDDGNSNRNFMQLINDDALS
    FKEEIAKAQVIGETDNLNQVVSDIAGSPAIKKGILQSLKIVDELVKIMGHQPENIVVEMARENQ
    FTNQGRRNSQQRLKGLTDSIKEFGSQILKEHPVENSQLQNDRLFLYYLQNGRDMYTGEELDIDY
    LSQYDIDHIIPQAFIKDNSIDNRVLTSSKENRGKSDDVPSKDVVRKMKSYWSKLLSAKLITQRK
    FDNLTKAERGGLTDDDKAGFIKRQLVETRQITKHVARILDERFNTETDENNKKIRQVKIVTLKS
    NLVSNFRKEFELYKVREINDYHHAHDAYLNAVIGKALLGVYPQLEPEFVYGDYPHFHGHKENKA
    TAKKFFYSNIMNFFKKDDVRTDKNGEIIWKKDEHISNIKKVLSYPQVNIVKKVEEQTGGFSKES
    ILPKGNSDKLIPRKTKKFYWDTKKYGGFDSPIVAYSILVIADIEKGKSKKLKTVKALVGVTIME
    KMTFERDPVAFLERKGYRNVQEENIIKLPKYSLFKLENGRKRLLASARELQKGNEIVLPNHLGT
    LLYHAKNIHKVDEPKHLDYVDKHKDEFKELLDVVSNFSKKYTLAEGNLEKIKELYAQNNGEDLK
    ELASSFINLLTFTAIGAPATFKFFDKNIDRKRYTSTTEILNATLIHQSITGLYETRIDLNKLGG
    D
    SEQ ID NO: 324
    MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRL
    KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY
    HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY
    NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF
    DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS
    MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD
    GTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI
    PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS
    LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD
    SVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA
    HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF
    KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ
    TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR
    LSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK
    FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS
    KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK
    SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS
    MPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG
    KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLAS
    AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRV
    ILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD
    ATLIHQSITGLYETRIDLSQLGGD
    SEQ ID NO: 325
    MTKPYSIGLDIGTNSVGWAVTTDNYKVPSKKMKVLGNTSKKYIKKNLLGVLLFDSGITAEGRRL
    KRTARRRYTRRRNRILYLQEIFSTEMATLDDAFFQRLDDSFLVPDDKRDSKYPIFGNLVEEKAY
    HDEFPTIYHLRKYLADSTKKADLRLVYLALAHMIKYRGHFLIEGEFNSKNNDIQKNFQDFLDTY
    NAIFESDLSLENSKQLEEIVKDKISKLEKKDRILKLFPGEKNSGIFSEFLKLIVGNQADFRKCF
    NLDEKASLHFSKESYDEDLETLLGYIGDDYSDVFLKAKKLYDAILLSGFLTVTDNETEAPLSSA
    MIKRYNEHKEDLALLKEYIRNISLKTYNEVFKDDTKNGYAGYIDGKTNQEDFYVYLKKLLAEFE
    GADYFLEKIDREDFLRKQRTFDNGSIPYQIHLQEMRAILDKQAKFYPFLAKNKERIEKILTFRI
    PYYVGPLARGNSDFAWSIRKRNEKITPWNFEDVIDKESSAEAFINRMTSFDLYLPEEKVLPKHS
    LLYETFNVYNELTKVRFIAESMRDYQFLDSKQKKDIVRLYFKDKRKVTDKDIIEYLHAIYGYDG
    IELKGIEKQFNSSLSTYHDLLNIINDKEFLDDSSNEAIIEEIIHTLTIFEDREMIKQRLSKFEN
    IFDKSVLKKLSRRHYTGWGKLSAKLINGIRDEKSGNTILDYLIDDGISNRNFMQLIHDDALSFK
    KKIQKAQIIGDEDKGNIKEVVKSLPGSPAIKKGILQSIKIVDELVKVMGGRKPESIVVEMAREN
    QYTNQGKSNSQQRLKRLEKSLKELGSKILKENIPAKLSKIDNNALQNDRLYLYYLQNGKDMYTG
    DDLDIDRLSNYDIDHIIPQAFLKDNSIDNKVLVSSASNRGKSDDVPSLEVVKKRKTFWYQLLKS
    KLISQRKFDNLTKAERGGLSPEDKAGFIQRQLVETRQITKHVARLLDEKFNNKKDENNRAVRTV
    KIITLKSTLVSQFRKDFELYKVREINDFHHAHDAYLNAVVASALLKKYPKLEPEFVYGDYPKYN
    SFRERKSATEKVYFYSNIMNIFKKSISLADGRVIERPLIEVNEETGESVWNKESDLATVRRVLS
    YPQVNVVKKVEEQNHGLDRGKPKGLFNANLSSKPKPNSNENLVGAKEYLDPKKYGGYAGISNSF
    TVLVKGTIEKGAKKKITNVLEFQGISILDRINYRKDKLNFLLEKGYKDIELIIELPKYSLFELS
    DGSRRMLASILSTNNKRGEIHKGNQIFLSQKFVKLLYHAKRISNTINENHRKYVENHKKEFEEL
    FYYILEFNENYVGAKKNGKLLNSAFQSWQNHSIDELCSSFIGPTGSERKGLFELTSRGSAADFE
    FLGVKIPRYRDYTPSSLLKDATLIHQSVTGLYETRIDLAKLGEG
    SEQ ID NO: 326
    MKKQKFSDYYLGFDIGTNSVGWCVTDLDYNVLRFNKKDMWGSRLFDEAKTAAERRVQRNSRRRL
    KRRKWRLNLLEEIFSDEIMKIDSNFFRRLKESSLWLEDKNSKEKFTLFNDDNYKDYDFYKQYPT
    IFHLRDELIKNPEKKDIRLIYLALHSIFKSRGHFLFEGQNLKEIKNFETLYNNLISFLEDNGIN
    KSIDKDNIEKLEKIICDSGKGLKDKEKEFKGIFNSDKQLVAIFKLSVGSSVSLNDLFDTDEYKK
    EEVEKEKISFREQIYEDDKPIYYSILGEKIELLDIAKSFYDFMVLNNILSDSNYISEAKVKLYE
    EHKKDLKNLKYIIRKYNKENYDKLFKDKNENNYPAYIGLNKEKDKKEVVEKSRLKIDDLIKVIK
    GYLPKPERIEEKDKTIFNEILNKIELKTILPKQRISDNGTLPYQIHEVELEKILENQSKYYDFL
    NYEENGVSTKDKLLKTFKFRIPYYVGPLNSYHKDKGGNSWIVRKEEGKILPWNFEQKVDIEKSA
    EEFIKRMTNKCTYLNGEDVIPKDSFLYSEYIILNELNKVQVNDEFLNEENKRKIIDELFKENKK
    VSEKKFKEYLLVNQIANRTVELKGIKDSFNSNYVSYIKFKDIFGEKLNLDIYKEISEKSILWKC
    LYGDDKKIFEKKIKNEYGDILNKDEIKKINSFKFNTWGRLSEKLLTGIEFINLETGECYSSVME
    ALRRTNYNLMELLSSKFTLQESIDNENKEMNEVSYRDLIEESYVSPSLKRAILQTLKIYEEIKK
    ITGRVPKKVFIEMARGGDESMKNKKIPARQEQLKKLYDSCGNDIANFSIDIKEMKNSLSSYDNN
    SLRQKKLYLYYLQFGKCMYTGREIDLDRLLQNNDTYDIDHIYPRSKVIKDDSFDNLVLVLKNEN
    AEKSNEYPVKKEIQEKMKSFWRFLKEKNFISDEKYKRLTGKDDFELRGFMARQLVNVRQTTKEV
    GKILQQIEPEIKIVYSKAEIASSFREMFDFIKVRELNDTHHAKDAYLNIVAGNVYNTKFTEKPY
    RYLQEIKENYDVKKIYNYDIKNAWDKENSLEIVKKNMEKNTVNITRFIKEEKGELFNLNPIKKG
    ETSNEIISIKPKLYDGKDNKLNEKYGYYTSLKAAYFIYVEHEKKNKKVKTFERITRIDSTLIKN
    EKNLIKYLVSQKKLLNPKIIKKIYKEQTLIIDSYPYTFTGVDSNKKVELKNKKQLYLEKKYEQI
    LKNALKFVEDNQGETEENYKFIYLKKRNNNEKNETIDAVKERYNIEFNEMYDKFLEKLSSKDYK
    NYINNKLYTNFLNSKEKFKKLKLWEKSLILREFLKIFNKNTYGKYEIKDSQTKEKLFSFPEDTG
    RIRLGQSSLGNNKELLEESVTGLFVKKIKL
    SEQ ID NO: 327
    MKNYTIGLDIGVASVGWVCIDENYKILNYNNRHAFGVHEEESAESAAGRRLKRGMRRRYNRRKK
    RLQLLQSLFDSYITDSGFFSKTDSQHFWKNNNEFENRSLTEVLSSLRISSRKYPTIYHLRSDLI
    ESNKKMDLRLVYLALHNLVKYRGHFLQEGNWSEAASAEGMDDQLLELVTRYAELENLSPLDLSE
    SQWKAAETLLLNRNLTKTDQSKELTAMFGKEYEPFCKLVAGLGVSLHQLFPSSEQALAYKETKT
    KVQLSNENVEEVMELLLEEESALLEAVQPFYQQVVLYELLKGETYVAKAKVSAFKQYQKDMASL
    KNLLDKTFGEKVYRSYFISDKNSQREYQKSHKVEVLCKLDQFNKEAKFAETFYKDLKKLLEDKS
    KTSIGTTEKDEMLRIIKAIDSNQFLQKQKGIQNAAIPHQNSLYEAEKILRNQQAHYPFITTEWI
    EKVKQILAFRIPYYIGPLVKDTTQSPFSWVERKGDAPITPWNFDEQIDKAASAEAFISRMRKTC
    TYLKGQEVLPKSSLTYERFEVLNELNGIQLRTTGAESDFRHRLSYEMKCWIIDNVFKQYKTVST
    KRLLQELKKSPYADELYDEHTGEIKEVFGTQKENAFATSLSGYISMKSILGAVVDDNPAMTEEL
    IYWIAVFEDREILHLKIQEKYPSITDVQRQKLALVKLPGWGRFSRLLIDGLPLDEQGQSVLDHM
    EQYSSVFMEVLKNKGFGLEKKIQKMNQHQVDGTKKIRYEDIEELAGSPALKRGIWRSVKIVEEL
    VSIFGEPANIVLEVAREDGEKKRTKSRKDQWEELTKTTLKNDPDLKSFIGEIKSQGDORFNEQR
    FWLYVTQQGKCLYTGKALDIQNLSMYEVDHILPQNFVKDDSLDNLALVMPEANQRKNQVGQNKM
    PLEIIEANQQYAMRTLWERLHELKLISSGKLGRLKKPSFDEVDKDKFIARQLVETRQIIKHVRD
    LLDERFSKSDIHLVKAGIVSKFRRFSEIPKIRDYNNKHHAMDALFAAALIQSILGKYGKNFLAF
    DLSKKDRQKQWRSVKGSNKEFFLFKNFGNLRLQSPVTGEEVSGVEYMKHVYFELPWQTTKMTQT
    GDGMFYKESIFSPKVKQAKYVSPKTEKFVHDEVKNHSICLVEFTFMKKEKEVQETKEIDLKVIE
    HHQFLKEPESQLAKFLAEKETNSPIIHARIIRTIPKYQKIWIEHFPYYFISTRELHNARQFEIS
    YELMEKVKQLSERSSVEELKIVFGLLIDQMNDNYPIYTKSSIQDRVQKFVDTQLYDFKSFEIGF
    EELKKAVAANAQRSDTFGSRISKKPKPEEVAIGYESITGLKYRKPRSVVGTKR
    SEQ ID NO: 328
    MKKEIKDYFLGLDVGTGSVGWAVTDTDYKLLKANRKDLWGMRCFETAETAEVRRLHRGARRRIE
    RRKKRIKLLQELFSQEIAKTDEGFFQRMKESPFYAEDKTILQENTLFNDKDFADKTYHKAYPTI
    NHLIKAWIENKVKPDPRLLYLACHNIIKKRGHFLFEGDFDSENQFDTSIQALFEYLREDMEVDI
    DADSQKVKEILKDSSLKNSEKQSRLNKILGLKPSDKQKKAITNLISGNKINFADLYDNPDLKDA
    EKNSISFSKDDFDALSDDLASILGDSFELLLKAKAVYNCSVLSKVIGDEQYLSFAKVKIYEKHK
    TDLTKLKNVIKKHFPKDYKKVFGYNKNEKNNNNYSGYVGVCKTKSKKLIINNSVNQEDFYKFLK
    TILSAKSEIKEVNDILTEIETGTFLPKQISKSNAEIPYQLRKMELEKILSNAEKHFSFLKQKDE
    KGLSHSEKIIMLLTFKIPYYIGPINDNHKKFFPDRCWVVKKEKSPSGKTTPWNFFDHIDKEKTA
    EAFITSRTNFCTYLVGESVLPKSSLLYSEYTVLNEINNLQIIIDGKNICDIKLKQKIYEDLFKK
    YKKITQKQISTFIKHEGICNKTDEVIILGIDKECTSSLKSYIELKNIFGKQVDEISTKNMLEEI
    IRWATIYDEGEGKTILKTKIKAEYGKYCSDEQIKKILNLKFSGWGRLSRKFLETVTSEMPGFSE
    PVNIITAMRETQNNLMELLSSEFTFTENIKKINSGFEDAEKQFSYDGLVKPLFLSPSVKKMLWQ
    TLKLVKEISHITQAPPKKIFIEMAKGAELEPARTKTRLKILQDLYNNCKNDADAFSSEIKDLSG
    KIENEDNLRLRSDKLYLYYTQLGKCMYCGKPIEIGHVFDTSNYDIDHIYPQSKIKDDSISNRVL
    VCSSCNKNKEDKYPLKSEIQSKQRGFWNFLQRNNFISLEKLNRLTRATPISDDETAKFIARQLV
    ETRQATKVAAKVLEKMFPETKIVYSKAETVSMFRNKFDIVKCREINDFHHAHDAYLNIVVGNVY
    NTKFTNNPWNFIKEKRDNPKIADTYNYYKVFDYDVKRNNITAWEKGKTIITVKDMLKRNTPIYT
    RQAACKKGELFNQTIMKKGLGQHPLKKEGPFSNISKYGGYNKVSAAYYTLIEYEEKGNKIRSLE
    TIPLYLVKDIQKDQDVLKSYLTDLLGKKEFKILVPKIKINSLLKINGFPCHITGKTNDSFLLRP
    AVQFCCSNNEVLYFKKIIRFSEIRSQREKIGKTISPYEDLSFRSYIKENLWKKTKNDEIGEKEF
    YDLLQKKNLEIYDMLLTKHKDTIYKKRPNSATIDILVKGKEKFKSLIIENQFEVILEILKLFSA
    TRNVSDLQHIGGSKYSGVAKIGNKISSLDNCILIYQSITGIFEKRIDLLKV
    SEQ ID NO: 329
    MEGQMKNNGNNLQQGNYYLGLDVGTSSVGWAVTDTDYNVLKFRGKSMWGARLFDEASTAEERRT
    HRGNRRRLARRKYRLLLLEQLFEKEIRKIDDNFFVRLHESNLWADDKSKPSKFLLFNDTNFTDK
    DYLKKYPTIYHLRSDLIHNSTEHDIRLVFLALHHLIKYRGHFIYDNSANGDVKTLDEAVSDFEE
    YLNENDIEFNIENKKEFINVLSDKHLTKKEKKISLKKLYGDITDSENINISVLIEMLSGSSISL
    SNLFKDIEFDGKQNLSLDSDIEETLNDVVDILGDNIDLLIHAKEVYDIAVLTSSLGKHKYLCDA
    KVELFEKNKKDLMILKKYIKKNHPEDYKKIFSSPTEKKNYAAYSQTNSKNVCSQEEFCLFIKPY
    IRDMVKSENEDEVRIAKEVEDKSFLTKLKGTNNSVVPYQIHERELNQILKNIVAYLPFMNDEQE
    DISVVDKIKLIFKFKIPYYVGPLNTKSTRSWVYRSDEKIYPWNFSNVIDLDKTAHEFMNRLIGR
    CTYTNDPVLPMDSLLYSKYNVLNEINPIKVNGKAIPVEVKQAIYTDLFENSKKKVTRKSIYIYL
    LKNGYIEKEDIVSGIDIEIKSKLKSHHDFTQIVQENKCTPEEIERIIKGILVYSDDKSMLRRWL
    KNNIKGLSENDVKYLAKLNYKEWGRLSKTLLTDIYTINPEDGEACSILDIMWNTNATLMEILSN
    EKYQFKQNIENYKAENYDEKQNLHEELDDMYISPAARRSIWQALRIVDEIVDIKKSAPKKIFIE
    MAREKKSAMKKKRTESRKDTLLELYKSCKSQADGFYDEELFEKLSNESNSRLRRDQLYLYYTOM
    GRSMYTGKRIDFDKLINDKNTYDIDHIYPRSKIKDDSITNRVLVEKDINGEKTDIYPISEDIRQ
    KMQPFWKILKEKGLINEEKYKRLTRNYELTDEELSSFVARQLVETQQSTKALATLLKKEYPSAK
    IVYSKAGNVSEFRNRKDKELPKFREINDLHHAKDAYLNIVVGNVYDTKFTEKFFNNIRNENYSL
    KRVFDFSVPGAWDAKGSTFNTIKKYMAKNNPIIAFAPYEVKGELFDQQIVPKGKGQFPIKQGKD
    IEKYGGYNKLSSAFLFAVEYKGKKARERSLETVYIKDVELYLQDPIKYCESVLGLKEPQIIKPK
    ILMGSLFSINNKKLVVTGRSGKQYVCHHIYQLSINDEDSQYLKNIAKYLQEEPDGNIERQNILN
    ITSVNNIKLFDVLCTKFNSNTYEIILNSLKNDVNEGREKFSELDILEQCNILLQLLKAFKCNRE
    SSNLEKLNNKKQAGVIVIPHLFTKCSVFKVIHQSITGLFEKEMDLLK
    SEQ ID NO: 330
    MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKNRR
    IKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYHLQEA
    LLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNNIKLNLD
    YEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFSIMLLGLKFNEGKLFNHADNAEELKGANQ
    SHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAYDKFRNELKQV
    KDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKKQYSLLIKELKKI
    IPQDSELYFEAENDTLLKVLNTTDNASIPMQINLYEAETILRNQQKYHAEITDEMIEKVLSLIQ
    FRIPYYVGPLVNDHTASKFGWMERKSNESIKPWNFDEVVDRSKSATQFIRRMTNKCSYLINEDV
    LPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEHIFKKYKTVSHSKFLEIML
    NSNHRENFMNHGEKLSIFGTQDDKKFASKLSSYQDMTKIFGDIEGKRAQIEEIIQWITIFEDKK
    ILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQGHSIIELLRHSDENFMEILTND
    VYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWSTIKLVRELTSIFGEPEKIIMEFATE
    DQQKGKKQKSRKQLWDDNIKKNKLKSVDEYKYIIDVANKLNNEQLQQEKLWLYLSQNGKCMYSG
    QSIDLDALLSPNATKHYEVDHIFPRSFIKDDSIDNKVLVIKKMNQTKGDQVPLQFIQQPYERIA
    YWKSLNKAGLISDSKLHKLMKPEFTAMDKEGFIQRQLVETRQISVHVRDFLKEEYPNTKVIPMK
    AKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNGVVYHGAQLAYPNVDLFDFNFKWEKVREKWKAL
    GEFNTKQKSRELFFFKKLEKMEVSQGERLISKIKLDMNHFKINYSRKLANIPQQFYNQTAVSPK
    TAELKYESNKSNEVVYKGLTPYQTYVVAIKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELA
    LYLAQRENKDEVLDAQIVYSLNKGDLLYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNN
    KETNVEKLLIEYDFIAEKVINEYHHYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKVVTAS
    ATRSDKIGSRKNSMTHRAFLGKGKDVKIAYTSISGLKTTKPKSLFKLAESRNEL
    SEQ ID NO: 331
    MAKILGLDLGTNSIGWAVVERENIDFSLIDKGVRIFSEGVKSEKGIESSRAAERTGYRSARKIK
    YRRKLRKYETLKVLSLNRMCPLSIEEVEEWKKSGFKDYPLNPEFLKWLSTDEESNVNPYFFRDR
    ASKHKVSLFELGRAFYHIAQRRGFLSNRLDQSAEGILEEHCPKIEAIVEDLISIDEISTNITDY
    FFETGILDSNEKNGYAKDLDEGDKKLVSLYKSLLAILKKNESDFENCKSEIIERLNKKDVLGKV
    KGKIKDISQAMLDGNYKTLGQYFYSLYSKEKIRNQYTSREEHYLSEFITICKVQGIDQINEEEK
    INEKKFDGLAKDLYKAIFFQRPLKSQKGLIGKCSFEKSKSRCAISHPDFEEYRMWTYLNTIKIG
    TQSDKKLRFLTQDEKLKLVPKFYRKNDFNFDVLAKELIEKGSSFGFYKSSKKNDFFYWFNYKPT
    DTVAACQVAASLKNAIGEDWKTKSFKYQTINSNKEQVSRTVDYKDLWHLLTVATSDVYLYEFAI
    DKLGLDEKNAKAFSKTKLKKDFASLSLSAINKILPYLKEGLLYSHAVFVANIENIVDENIWKDE
    KQRDYIKTQISEIIENYTLEKSRFEIINGLLKEYKSENEDGKRVYYSKEAEQSFENDLKKKLVL
    FYKSNEIENKEQQETIFNELLPIFIQQLKDYEFIKIQRLDQKVLIFLKGKNETGQIFCTEEKGT
    AEEKEKKIKNRLKKLYHPSDIEKFKKKIIKDEFGNEKIVLGSPLTPSIKNPMAMRALHQLRKVL
    NALILEGQIDEKTIIHIEMARELNDANKRKGIQDYQNDNKKFREDAIKEIKKLYFEDCKKEVEP
    TEDDILRYQLWMEQNRSEIYEEGKNISICDIIGSNPAYDIEHTIPRSRSQDNSQMNKTLCSQRF
    NREVKKQSMPIELNNHLEILPRIAHWKEEADNLTREIEIISRSIKAAATKEIKDKKIRRRHYLT
    LKRDYLQGKYDRFIWEEPKVGFKNSQIPDTGIITKYAQAYLKSYFKKVESVKGGMVAEFRKIWG
    IQESFIDENGMKHYKVKDRSKHTHHTIDAITIACMTKEKYDVLAHAWTLEDQQNKKEARSIIEA
    SKPWKTFKEDLLKIEEEILVSHYTPDNVKKQAKKIVRVRGKKQFVAEVERDVNGKAVPKKAASG
    KTIYKLDGEGKKLPRLQQGDTIRGSLHQDSIYGAIKNPLNTDEIKYVIRKDLESIKGSDVESIV
    DEVVKEKIKEAIANKVLLLSSNAQQKNKLVGTVWMNEEKRIAINKVRIYANSVKNPLHIKEHSL
    LSKSKHVHKQKVYGQNDENYAMAIYELDGKRDFELINIFNLAKLIKQGQGFYPLHKKKEIKGKI
    VFVPIEKRNKRDVVLKRGQQVVFYDKEVENPKDISEIVDFKGRIYIIEGLSIQRIVRPSGKVDE
    YGVIMLRYFKEARKADDIKQDNFKPDGVFKLGENKPTRKMNHQFTAFVEGIDFKVLPSGKFEKI
    SEQ ID NO: 332
    MEFKKVLGLDIGTNSIGCALLSLPKSIQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLPQV
    ITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETISTEGKESERIS
    DYVPISDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWVVYYLRKKALI
    KPTTKEELIRIIYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYETKFVSITKV
    KEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEKGKFKQNKPDL
    PKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRYKKELEFIWTKQC
    QLNPELNNLNINKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHIISEDIIYYQRDLKSQKSL
    ISECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIHNIKVIRKESEVNGKKKINIDETQLY
    INENIKEKLFELFNSKDSLSEKDILELISLNIINSGIKISKKEEETTHRINLFANRKELKGNET
    KSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTEKSILSSLGWKNRNGKWEKSK
    NYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLVVMRDGKYWQHPDQIAKDQENTSLMLE
    DKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIEHNPYKLELVSDQDLEKQVLKSFLE
    KKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDELGEYIRKKLPNNSLRNPIVEQVIRETI
    FIVRDVWKSFGIIDEIHIELGRELKNNSEERKKTSESQEKNFQEKERARKLLKELLNSSNFEHY
    DENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSGLTDEELNKKLKDEKIPTEIEVKKYILWLTQ
    KCRSPYTGKIIPLSKLFDSNVYEIEHIIPRSKMKNDSTNNLVICELGVNKAKGDRLAANFISES
    NGKCKFGEVEYTLLKYGDYLQYCKDTFKYQKAKYKNLLATEPPEDFIERQINDTRYIGRKLAEL
    LTPVVKDSKNIIFTIGSITSELKITWGLNGVWKDILRPRFKRLESIINKKLIFQDEDDPNKYHF
    DLSINPQLDKEGLKRLDHRHHALDATIIAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIR
    DFKLPWENFTSEVKSKLLSCVVSYKESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAV
    RRSMFKEPIGTVWIKKIKEVSLKEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQEL
    GLSSSMRKQDDEKLNKFINEAKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPL
    NKKEYIEKLSLQKMFNDLPNFILEKSILDNYPEILKELESDNKYIIEPHKKNNPVNRLLLEHIL
    EYHNNPKEAFSTEGLEKLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMY
    ENNQTKDREFLKPNPSISVLKAIEHKNKIDFFAPNRLGFSRIILSPGDLVYVPTNDQYVLIKDN
    SSNETIINWDDNEFISNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNISEYSVD
    DPPIRIKDVCIKIRVDRLGNVRPL
    SEQ ID NO: 333
    MKHILGLDLGTNSIGWALIERNIEEKYGKIIGMGSRIVPMGAELSKFEQGQAQTKNADRRTNRG
    ARRLNKRYKQRRNKLIYILQKLDMLPSQIKLKEDFSDPNKIDKITILPISKKQEQLTAFDLVSL
    RVKALTEKVGLEDLGKIIYKYNQLRGYAGGSLEPEKEDIFDEEQSKDKKNKSFIAFSKIVFLGE
    PQEEIFKNKKLNRRAIIVETEEGNFEGSTFLENIKVGDSLELLINISASKSGDTITIKLPNKTN
    WRKKMENIENQLKEKSKEMGREFYISEFLLELLKENRWAKIRNNTILRARYESEFEAIWNEQVK
    HYPFLENLDKKTLIEIVSFIFPGEKESQKKYRELGLEKGLKYIIKNQVVFYQRELKDQSHLISD
    CRYEPNEKAIAKSHPVFQEYKVWEQINKLIVNTKIEAGTNRKGEKKYKYIDRPIPTALKEWIFE
    ELQNKKEITFSAIFKKLKAEFDLREGIDFLNGMSPKDKLKGNETKLQLQKSLGELWDVLGLDSI
    NRQIELWNILYNEKGNEYDLTSDRTSKVLEFINKYGNNIVDDNAEETAIRISKIKFARAYSSLS
    LKAVERILPLVRAGKYFNNDFSQQLQSKILKLLNENVEDPFAKAAQTYLDNNQSVLSEGGVGNS
    IATILVYDKHTAKEYSHDELYKSYKEINLLKQGDLRNPLVEQIINEALVLIRDIWKNYGIKPNE
    IRVELARDLKNSAKERATIHKRNKDNQTINNKIKETLVKNKKELSLANIEKVKLWEAQRHLSPY
    TGQPIPLSDLFDKEKYDVDHIIPISRYEDDSFTNKVISEKSVNQEKANRTAMEYFEVGSLKYSI
    FTKEQFIAHVNEYFSGVKRKNLLATSIPEDPVQRQIKDTQYIAIRVKEELNKIVGNENVKTTTG
    SITDYLRNHWGLTDKFKLLLKERYEALLESEKFLEAEYDNYKKDFDSRKKEYEEKEVLFEEQEL
    TREEFIKEYKENYIRYKKNKLIIKGWSKRIDHRHHAIDALIVACTEPAHIKRLNDLNKVLQDWL
    VEHKSEFMPNFEGSNSELLEEILSLPENERTEIFTQIEKFRAIEMPWKGFPEQVEQKLKEIIIS
    HKPKDKLLLQYNKAGDRQIKLRGQLHEGTLYGISQGKEAYRIPLTKFGGSKFATEKNIQKIVSP
    FLSGFIANHLKEYNNKKEEAFSAEGIMDLNNKLAQYRNEKGELKPHTPISTVKIYYKDPSKNKK
    KKDEEDLSLQKLDREKAFNEKLYVKTGDNYLFAVLEGEIKTKKTSQIKRLYDIISFFDATNFLK
    EEFRNAPDKKTFDKDLLFRQYFEERNKAKLLFTLKQGDFVYLPNENEEVILDKESPLYNQYWGD
    LKERGKNIYVVQKFSKKQIYFIKHTIADIIKKDVEFGSQNCYETVEGRSIKENCFKLEIDRLGN
    IVKVIKR
    SEQ ID NO: 334
    MHVEIDFPHFSRGDSHLAMNKNEILRGSSVLYRLGLDLGSNSLGWFVTHLEKRGDRHEPVALGP
    GGVRIFPDGRDPQSGTSNAVDRRMARGARKRRDRFVERRKELIAALIKYNLLPDDARERRALEV
    LDPYALRKTALTDTLPAHHVGRALFHLNQRRGFQSNRKTDSKQSEDGAIKQAASRLATDKGNET
    LGVFFADMHLRKSYEDRQTAIRAELVRLGKDHLTGNARKKIWAKVRKRLFGDEVLPRADAPHGV
    RARATITGTKASYDYYPTRDMLRDEFNAIWAGQSAHHATITDEARTEIEHIIFYQRPLKPAIVG
    KCTLDPATRPFKEDPEGYRAPWSHPLAQRFRILSEARNLEIRDTGKGSRRLTKEQSDLVVAALL
    ANREVKFDKLRTLLKLPAEARFNLESDRRAALDGDQTAARLSDKKGFNKAWRGFPPERQIAIVA
    RLEETEDENELIAWLEKECALDGAAAARVANTTLPDGHCRLGLRAIKKIVPIMQDGLDEDGVAG
    AGYHIAAKRAGYDHAKLPTGEQLGRLPYYGQWLQDAVVGSGDARDQKEKQYGQFPNPTVHIGLG
    QLRRVVNDLIDKYGPPTEISIEFTRALKLSEQQKAERQREQRRNQDKNKARAEELAKFGRPANP
    RNLLKMRLWEELAHDPLDRKCVYTGEQISIERLLSDEVDIDHILPVAMTLDDSPANKIICMRYA
    NRHKRKQTPSEAFGSSPTLQGHRYNWDDIAARATGLPRNKRWRFDANAREEFDKRGGFLARQLN
    ETGWLARLAKQYLGAVTDPNQIWVVPGRLTSMLRGKWGLNGLLPSDNYAGVQDKAEEFLASTDD
    MEFSGVKNRADHRHHAIDGLVTALTDRSLLWKMANAYDEEHEKFVIEPPWPTMRDDLKAALEKM
    VVSHKPDHGIEGKLHEDSAYGFVKPLDATGLKEEEAGNLVYRKAIESLNENEVDRIRDIQLRTI
    VRDHVNVEKTKGVALADALRQLQAPSDDYPQFKHGLRHVRILKKEKGDYLVPIANRASGVAYKA
    YSAGENFCVEVFETAGGKWDGEAVRRFDANKKNAGPKIAHAPQWRDANEGAKLVMRIHKGDLIR
    LDHEGRARIMVVHRLDAAAGRFKLADHNETGNLDKRHATNNDIDPFRWLMASYNTLKKLAAVPV
    RVDELGRVWRVMPN
    SEQ ID NO: 335
    METTLGIDLGTNSIGLALVDQEEHQILYSGVRIFPEGINKDTIGLGEKEESRNATRRAKRQMRR
    QYFRKKLRKAKLLELLIAYDMCPLKPEDVRRWKNWDKQQKSTVRQFPDTPAFREWLKQNPYELR
    KQAVTEDVTRPELGRILYQMIQRRGFLSSRKGKEEGKIFTGKDRMVGIDETRKNLQKQTLGAYL
    YDIAPKNGEKYRFRTERVRARYTLRDMYIREFEIIWQRQAGHLGLAHEQATRKKNIFLEGSATN
    VRNSKLITHLQAKYGRGHVLIEDTRITVTFQLPLKEVLGGKIEIEEEQLKFKSNESVLFWQRPL
    RSQKSLLSKCVFEGRNFYDPVHQKWIIAGPTPAPLSHPEFEEFRAYQFINNIIYGKNEHLTAIQ
    REAVFELMCTESKDFNFEKIPKHLKLFEKFNFDDTTKVPACTTISQLRKLFPHPVWEEKREEIW
    HCFYFYDDNTLLFEKLQKDYALQTNDLEKIKKIRLSESYGNVSLKAIRRINPYLKKGYAYSTAV
    LLGGIRNSFGKRFEYFKEYEPEIEKAVCRILKEKNAEGEVIRKIKDYLVHNRFGFAKNDRAFQK
    LYHHSQAITTQAQKERLPETGNLRNPIVQQGLNELRRTVNKLLATCREKYGPSFKFDHIHVEMG
    RELRSSKTEREKQSRQIRENEKKNEAAKVKLAEYGLKAYRDNIQKYLLYKEIEEKGGTVCCPYT
    GKTLNISHTLGSDNSVQIEHIIPYSISLDDSLANKTLCDATFNREKGELTPYDFYQKDPSPEKW
    GASSWEEIEDRAFRLLPYAKAQRFIRRKPQESNEFISRQLNDTRYISKKAVEYLSAICSDVKAF
    PGQLTAELRHLWGLNNILQSAPDITFPLPVSATENHREYYVITNEQNEVIRLFPKQGETPRTEK
    GELLLTGEVERKVFRCKGMQEFQTDVSDGKYWRRIKLSSSVTWSPLFAPKPISADGQIVLKGRI
    EKGVFVCNQLKQKLKTGLPDGSYWISLPVISQTFKEGESVNNSKLTSQQVQLFGRVREGIFRCH
    NYQCPASGADGNFWCTLDTDTAQPAFTPIKNAPPGVGGGQIILTGDVDDKGIFHADDDLHYELP
    ASLPKGKYYGIFTVESCDPTLIPIELSAPKTSKGENLIEGNIWVDEHTGEVRFDPKKNREDQRH
    HAIDAIVIALSSQSLFQRLSTYNARRENKKRGLDSTEHFPSPWPGFAQDVRQSVVPLLVSYKQN
    PKTLCKISKTLYKDGKKIHSCGNAVRGQLHKETVYGQRTAPGATEKSYHIRKDIRELKTSKHIG
    KVVDITIRQMLLKHLQENYHIDITQEFNIPSNAFFKEGVYRIFLPNKHGEPVPIKKIRMKEELG
    NAERLKDNINQYVNPRNNHHVMIYQDADGNLKEEIVSFWSVIERQNQGQPIYQLPREGRNIVSI
    LQINDTFLIGLKEEEPEVYRNDLSTLSKHLYRVQKLSGMYYTFRHHLASTLNNEREEFRIQSLE
    AWKRANPVKVQIDEIGRITFLNGPLC
    SEQ ID NO: 336
    MESSQILSPIGIDLGGKFTGVCLSHLEAFAELPNHANTKYSVILIDHNNFQLSQAQRRATRHRV
    RNKKRNQFVKRVALQLFQHILSRDLNAKEETALCHYLNNRGYTYVDTDLDEYIKDETTINLLKE
    LLPSESEHNFIDWFLQKMQSSEFRKILVSKVEEKKDDKELKNAVKNIKNFITGFEKNSVEGHRH
    RKVYFENIKSDITKDNQLDSIKKKIPSVCLSNLLGHLSNLQWKNLHRYLAKNPKQFDEQTFGNE
    FLRMLKNFRHLKGSQESLAVRNLIQQLEQSQDYISILEKTPPEITIPPYEARTNTGMEKDQSLL
    LNPEKLNNLYPNWRNLIPGIIDAHPFLEKDLEHTKLRDRKRIISPSKQDEKRDSYILQRYLDLN
    KKIDKFKIKKQLSFLGQGKQLPANLIETQKEMETHFNSSLVSVLIQIASAYNKEREDAAQGIWF
    DNAFSLCELSNINPPRKQKILPLLVGAILSEDFINNKDKWAKFKIFWNTHKIGRTSLKSKCKEI
    EEARKNSGNAFKIDYEEALNHPEHSNNKALIKIIQTIPDIIQAIQSHLGHNDSQALIYHNPFSL
    SQLYTILETKRDGFHKNCVAVTCENYWRSQKTEIDPEISYASRLPADSVRPFDGVLARMMQRLA
    YEIAMAKWEQIKHIPDNSSLLIPIYLEQNRFEFEESFKKIKGSSSDKTLEQAIEKQNIQWEEKF
    QRIINASMNICPYKGASIGGQGEIDHIYPRSLSKKHFGVIFNSEVNLIYCSSQGNREKKEEHYL
    LEHLSPLYLKHQFGTDNVSDIKNFISQNVANIKKYISFHLLTPEQQKAARHALFLDYDDEAFKT
    ITKFLMSQQKARVNGTQKFLGKQIMEFLSTLADSKQLQLEFSIKQITAEEVHDHRELLSKQEPK
    LVKSRQQSFPSHAIDATLTMSIGLKEFPQFSQELDNSWFINHLMPDEVHLNPVRSKEKYNKPNI
    SSTPLFKDSLYAERFIPVWVKGETFAIGFSEKDLFEIKPSNKEKLFTLLKTYSTKNPGESLQEL
    QAKSKAKWLYFPINKTLALEFLHHYFHKEIVTPDDTTVCHFINSLRYYTKKESITVKILKEPMP
    VLSVKFESSKKNVLGSFKHTIALPATKDWERLFNHPNFLALKANPAPNPKEFNEFIRKYFLSDN
    NPNSDIPNNGHNIKPQKHKAVRKVFSLPVIPGNAGTMMRIRRKDNKGQPLYQLQTIDDTPSMGI
    QINEDRLVKQEVLMDAYKTRNLSTIDGINNSEGQAYATFDNWLTLPVSTFKPEIIKLEMKPHSK
    TRRYIRITQSLADFIKTIDEALMIKPSDSIDDPLNMPNEIVCKNKLFGNELKPRDGKMKIVSTG
    KIVTYEFESDSTPQWIQTLYVTQLKKQP
    SEQ ID NO: 337
    MKKIVGLDLGTNSIGWALINAYINKEHLYGIEACGSRIIPMDAAILGNFDKGNSISQTADRTSY
    RGIRRLRERHLLRRERLHRILDLLGFLPKHYSDSLNRYGKFLNDIECKLPWVKDETGSYKFIFQ
    ESFKEMLANFTEHHPILIANNKKVPYDWTIYYLRKKALTQKISKEELAWILLNFNQKRGYYQLR
    GEEEETPNKLVEYYSLKVEKVEDSGERKGKDTWYNVHLENGMIYRRTSNIPLDWEGKTKEFIVT
    TDLEADGSPKKDKEGNIKRSFRAPKDDDWTLIKKKTEADIDKIKMTVGAYIYDTLLQKPDQKIR
    GKLVRTIERKYYKNELYQILKTQSEFHEELRDKQLYIACLNELYPNNEPRRNSISTRDFCHLFI
    EDIIFYQRPLKSKKSLIDNCPYEENRYIDKESGEIKHASIKCIAKSHPLYQEFRLWQFIVNLRI
    YRKETDVDVTQELLPTEADYVTLFEWLNEKKEIDQKAFFKYPPFGFKKTTSNYRWNYVEDKPYP
    CNETHAQIIARLGKAHIPKAFLSKEKEETLWHILYSIEDKQEIEKALHSFANKNNLSEEFIEQF
    KNEPPEKKEYGSYSAKAIKKLLPLMRMGKYWSIENIDNGTRIRINKIIDGEYDENIRERVRQKA
    INLTDITHFRALPLWLACYLVYDRHSEVKDIVKWKTPKDIDLYLKSFKQHSLRNPIVEQVITET
    LRTVRDIWQQVGHIDEIHIELGREMKNPADKRARMSQQMIKNENTNLRIKALLTEFLNPEFGIE
    NVRPYSPSQQDLLRIYEEGVLNSILELPEDIGIILGKFNQTDTLKRPTRSEILRYKLWLEQKYR
    SPYTGEMIPLSKLFTPAYEIEHIIPQSRYFDDSLSNKVICESEINKLKDRSLGYEFIKNHHGEK
    VELAFDKPVEVLSVEAYEKLVHESYSHNRSKMKKLLMEDIPDQFIERQLNDSRYISKVVKSLLS
    NIVREENEQEAISKNVIPCTGGITDRLKKDWGINDVWNKIVLPRFIRLNELTESTRFTSINTNN
    TMIPSMPLELQKGFNKKRIDHRHHAMDAIIIACANRNIVNYLNNVSASKNTKITRRDLQTLLCH
    KDKTDNNGNYKWVIDKPWETFTQDTLTALQKITVSFKQNLRVINKTTNHYQHYENGKKIVSNQS
    KGDSWAIRKSMHKETVHGEVNLRMIKTVSFNEALKKPQAIVEMDLKKKILAMLELGYDTKRIKN
    YFEENKDTWQDINPSKIKVYYFTKETKDRYFAVRKPIDTSFDKKKIKESITDTGIQQIMLRHLE
    TKDNDPTLAFSPDGIDEMNRNILILNKGKKHQPIYKVRVYEKAEKFTVGQKGNKRTKFVEAAKG
    TNLFFAIYETEEIDKDTKKVIRKRSYSTIPLNVVIERQKQGLSSAPEDENGNLPKYILSPNDLV
    YVPTQEEINKGEVVMPIDRDRIYKMVDSSGITANFIPASTANLIFALPKATAEIYCNGENCIQN
    EYGIGSPQSKNQKAITGEMVKEICFPIKVDRLGNIIQVGSCILTN
    SEQ ID NO: 338
    MSRSLTFSFDIGYASIGWAVIASASHDDADPSVCGCGTVLFPKDDCQAFKRREYRRLRRNIRSR
    RVRIERIGRLLVQAQIITPEMKETSGHPAPFYLASEALKGHRTLAPIELWHVLRWYAHNRGYDN
    NASWSNSLSEDGGNGEDTERVKHAQDLMDKHGTATMAETICRELKLEEGKADAPMEVSTPAYKN
    LNTAFPRLIVEKEVRRILELSAPLIPGLTAEIIELIAQHHPLTTEQRGVLLQHGIKLARRYRGS
    LLFGQLIPRFDNRIISRCPVTWAQVYEAELKKGNSEQSARERAEKLSKVPTANCPEFYEYRMAR
    ILCNIRADGEPLSAEIRRELMNQARQEGKLTKASLEKAISSRLGKETETNVSNYFTLHPDSEEA
    LYLNPAVEVLQRSGIGQILSPSVYRIAANRLRRGKSVTPNYLLNLLKSRGESGEALEKKIEKES
    KKKEADYADTPLKPKYATGRAPYARTVLKKVVEEILDGEDPTRPARGEAHPDGELKAHDGCLYC
    LLDTDSSVNQHQKERRLDTMTNNHLVRHRMLILDRLLKDLIQDFADGQKDRISRVCVEVGKELT
    TFSAMDSKKIQRELTLRQKSHTDAVNRLKRKLPGKALSANLIRKCRIAMDMNWTCPFTGATYGD
    HELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGYDFVEQEQENPVPDKPNLHICSL
    NNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQSQNHEAMKEIGMTEGMMTQSSHLM
    KLACKSIKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFKELCPEAADPDSGKILKENLRSLTHLH
    HALDACVLGLIPYIIPAHHNGLLRRVLAMRRIPEKLIPQVRPVANQRHYVLNDDGRMMLRDLSA
    SLKENIREQLMEQRVIQHVPADMGGALLKETMQRVLSVDGSGEDAMVSLSKKKDGKKEKNQVKA
    SKLVGVFPEGPSKLKALKAAIEIDGNYGVALDPKPVVIRHIKVFKRIMALKEQNGGKPVRILKK
    GMLIHLTSSKDPKHAGVWRIESIQDSKGGVKLDLQRAHCAVPKNKTHECNWREVDLISLLKKYQ
    MKRYPTSYTGTPR
    SEQ ID NO: 339
    MTQKVLGLDLGTNSIGSAVRNLDLSDDLQWQLEFFSSDIFRSSVNKESNGREYSLAAQRSAHRR
    SRGLNEVRRRRLWATLNLLIKHGFCPMSSESLMRWCTYDKRKGLFREYPIDDKDFNAWILLDFN
    GDGRPDYSSPYQLRRELVTRQFDFEQPIERYKLGRALYHIAQHRGFKSSKGETLSQQETNSKPS
    STDEIPDVAGAMKASEEKLSKGLSTYMKEHNLLTVGAAFAQLEDEGVRVRNNNDYRAIRSQFQH
    EIETIFKFQQGLSVESELYERLISEKKNVGTIFYKRPLRSQRGNVGKCTLERSKPRCAIGHPLF
    EKFRAWTLINNIKVRMSVDTLDEQLPMKLRLDLYNECFLAFVRTEFKFEDIRKYLEKRLGIHFS
    YNDKTINYKDSTSVAGCPITARFRKMLGEEWESFRVEGQKERQAHSKNNISFHRVSYSIEDIWH
    FCYDAEEPEAVLAFAQETLRLERKKAEELVRIWSAMPQGYAMLSQKAIRNINKILMLGLKYSDA
    VILAKVPELVDVSDEELLSIAKDYYLVEAQVNYDKRINSIVNGLIAKYKSVSEEYRFADHNYEY
    LLDESDEKDIIRQIENSLGARRWSLMDANEQTDILQKVRDRYQDFFRSHERKFVESPKLGESFE
    NYLTKKFPMVEREQWKKLYHPSQITIYRPVSVGKDRSVLRLGNPDIGAIKNPTVLRVLNTLRRR
    VNQLLDDGVISPDETRVVVETARELNDANRKWALDTYNRIRHDENEKIKKILEEFYPKRDGIST
    DDIDKARYVIDQREVDYFTGSKTYNKDIKKYKFWLEQGGQCMYTGRTINLSNLFDPNAFDIEHT
    IPESLSFDSSDMNLTLCDAHYNRFIKKNHIPTDMPNYDKAITIDGKEYPAITSQLQRWVERVER
    LNRNVEYWKGQARRAQNKDRKDQCMREMHLWKMELEYWKKKLERFTVTEVTDGFKNSQLVDTRV
    ITRHAVLYLKSIFPHVDVQRGDVTAKFRKILGIQSVDEKKDRSLHSHHAIDATTLTIIPVSAKR
    DRMLELFAKIEEINKMLSFSGSEDRTGLIQELEGLKNKLQMEVKVCRIGHNVSEIGTFINDNII
    VNHHIKNQALTPVRRRLRKKGYIVGGVDNPRWQTGDALRGEIHKASYYGAITQFAKDDEGKVLM
    KEGRPQVNPTIKFVIRRELKYKKSAADSGFASWDDLGKAIVDKELFALMKGQFPAETSFKDACE
    QGIYMIKKGKNGMPDIKLHHIRHVRCEAPQSGLKIKEQTYKSEKEYKRYFYAAVGDLYAMCCYT
    NGKIREFRIYSLYDVSCHRKSDIEDIPEFITDKKGNRLMLDYKLRTGDMILLYKDNPAELYDLD
    NVNLSRRLYKINRFESQSNLVLMTHHLSTSKERGRSLGKTVDYQNLPESIRSSVKSLNFLIMGE
    NRDFVIKNGKIIFNHR
    SEQ ID NO: 340
    MLVSPISVDLGGKNTGFFSFTDSLDNSQSGTVIYDESFVLSQVGRRSKRHSKRNNLRNKLVKRL
    FLLILQEHHGLSIDVLPDEIRGLFNKRGYTYAGFELDEKKKDALESDTLKEFLSEKLQSIDRDS
    DVEDFLNQIASNAESFKDYKKGFEAVFASATHSPNKKLELKDELKSEYGENAKELLAGLRVTKE
    ILDEFDKQENQGNLPRAKYFEELGEYIATNEKVKSFFDSNSLKLTDMTKLIGNISNYQLKELRR
    YFNDKEMEKGDIWIPNKLHKITERFVRSWHPKNDADRQRRAELMKDLKSKEIMELLTTTEPVMT
    IPPYDDMNNRGAVKCQTLRLNEEYLDKHLPNWRDIAKRLNHGKFNDDLADSTVKGYSEDSTLLH
    RLLDTSKEIDIYELRGKKPNELLVKTLGQSDANRLYGFAQNYYELIRQKVRAGIWVPVKNKDDS
    LNLEDNSNMLKRCNHNPPHKKNQIHNLVAGILGVKLDEAKFAEFEKELWSAKVGNKKLSAYCKN
    IEELRKTHGNTFKIDIEELRKKDPAELSKEEKAKLRLTDDVILNEWSQKIANFFDIDDKHRQRF
    NNLFSMAQLHTVIDTPRSGFSSTCKRCTAENRFRSETAFYNDETGEFHKKATATCQRLPADTQR
    PFSGKIERYIDKLGYELAKIKAKELEGMEAKEIKVPIILEQNAFEYEESLRKSKTGSNDRVINS
    KKDRDGKKLAKAKENAEDRLKDKDKRIKAFSSGICPYCGDTIGDDGEIDHILPRSHTLKIYGTV
    FNPEGNLIYVHQKCNQAKADSIYKLSDIKAGVSAQWIEEQVANIKGYKTFSVLSAEQQKAFRYA
    LFLQNDNEAYKKVVDWLRTDQSARVNGTQKYLAKKIQEKLTKMLPNKHLSFEFILADATEVSEL
    RRQYARQNPLLAKAEKQAPSSHAIDAVMAFVARYQKVFKDGTPPNADEVAKLAMLDSWNPASNE
    PLTKGLSTNQKIEKMIKSGDYGQKNMREVFGKSIFGENAIGERYKPIVVQEGGYYIGYPATVKK
    GYELKNCKVVTSKNDIAKLEKIIKNQDLISLKENQYIKIFSINKQTISELSNRYFNMNYKNLVE
    RDKEIVGLLEFIVENCRYYTKKVDVKFAPKYIHETKYPFYDDWRRFDEAWRYLQENQNKTSSKD
    RFVIDKSSLNEYYQPDKNEYKLDVDTQPIWDDFCRWYFLDRYKTANDKKSIRIKARKTFSLLAE
    SGVQGKVFRAKRKIPTGYAYQALPMDNNVIAGDYANILLEANSKTLSLVPKSGISIEKQLDKKL
    DVIKKTDVRGLAIDNNSFFNADFDTHGIRLIVENTSVKVGNFPISAIDKSAKRMIFRALFEKEK
    GKRKKKTTISFKESGPVQDYLKVFLKKIVKIQLRTDGSISNIVVRKNAADFTLSFRSEHIQKLL
    K
    SEQ ID NO: 341
    MAYRLGLDIGITSVGWAVVALEKDESGLKPVRIQDLGVRIFDKAEDSKTGASLALPRREARSAR
    RRTRRRRHRLWRVKRLLEQHGILSMEQIEALYAQRTSSPDVYALRVAGLDRCLIAEEIARVLIH
    IAHRRGFQSNRKSEIKDSDAGKLLKAVQENENLMQSKGYRTVAEMLVSEATKTDAEGKLVHGKK
    HGYVSNVRNKAGEYRHTVSRQAIVDEVRKIFAAQRALGNDVMSEELEDSYLKILCSQRNFDDGP
    GGDSPYGHGSVSPDGVRQSIYERMVGSCTFETGEKRAPRSSYSFERFQLLTKVVNLRIYRQQED
    GGRYPCELTQTERARVIDCAYEQTKITYGKLRKLLDMKDTESFAGLTYGLNRSRNKTEDTVFVE
    MKFYHEVRKALQRAGVFIQDLSIETLDQIGWILSVWKSDDNRRKKLSTLGLSDNVIEELLPLNG
    SKFGHLSLKAIRKILPFLEDGYSYDVACELAGYQFQGKTEYVKQRLLPPLGEGEVTNPVVRRAL
    SQAIKVVNAVIRKHGSPESIHIELARELSKNLDERRKIEKAQKENQKNNEQIKDEIREILGSAH
    VTGRDIVKYKLFKQQQEFCMYSGEKLDVTRLFEPGYAEVDHIIPYGISFDDSYDNKVLVKTEQN
    RQKGNRTPLEYLRDKPEQKAKFIALVESIPLSQKKKNHLLMDKRAIDLEQEGFRERNLSDTRYI
    TRALMNHIQAWLLFDETASTRSKRVVCVNGAVTAYMRARWGLTKDRDAGDKHHAADAVVVACIG
    DSLIQRVTKYDKFKRNALADRNRYVQQVSKSEGITQYVDKETGEVFTWESFDERKFLPNEPLEP
    WPFFRDELLARLSDDPSKNIRAIGLLTYSETEQIDPIFVSRMPTRKVTGAAHKETIRSPRIVKV
    DDNKGTEIQVVVSKVALTELKLTKDGEIKDYFRPEDDPRLYNTLRERLVQFGGDAKAAFKEPVY
    KISKDGSVRTPVRKVKIQEKLTLGVPVHGGRGIAENGGMVRIDVFAKGGKYYFVPIYVADVLKR
    ELPNRLATAHKPYSEWRVVDDSYQFKFSLYPNDAVMIKPSREVDITYKDRKEPVGCRIMYFVSA
    NIASASISLRTHDNSGELEGLGIQGLEVFEKYVVGPLGDTHPVYKERRMPFRVERKMN
    SEQ ID NO: 342
    MPVLSPLSPNAAQGRRRWSLALDIGEGSIGWAVAEVDAEGRVLQLTGTGVTLFPSAWSNENGTY
    VAHGAADRAVRGQQQRHDSRRRRLAGLARLCAPVLERSPEDLKDLTRTPPKADPRAIFFLRADA
    ARRPLDGPELFRVLHHMAAHRGIRLAELQEVDPPPESDADDAAPAATEDEDGTRRAAADERAFR
    RLMAEHMHRHGTQPTCGEIMAGRLRETPAGAQPVTRARDGLRVGGGVAVPTRALIEQEFDAIRA
    IQAPRHPDLPWDSLRRLVLDQAPIAVPPATPCLFLEELRRRGETFQGRTITREAIDRGLTVDPL
    IQALRIRETVGNLRLHERITEPDGRQRYVPRAMPELGLSHGELTAPERDTLVRALMHDPDGLAA
    KDGRIPYTRLRKLIGYDNSPVCFAQERDTSGGGITVNPTDPLMARWIDGWVDLPLKARSLYVRD
    VVARGADSAALARLLAEGAHGVPPVAAAAVPAATAAILESDIMQPGRYSVCPWAAEAILDAWAN
    APTEGFYDVTRGLFGFAPGEIVLEDLRRARGALLAHLPRTMAAARTPNRAAQQRGPLPAYESVI
    PSQLITSLRRAHKGRAADWSAADPEERNPFLRTWTGNAATDHILNQVRKTANEVITKYGNRRGW
    DPLPSRITVELAREAKHGVIRRNEIAKENRENEGRRKKESAALDTFCQDNTVSWQAGGLPKERA
    ALRLRLAQRQEFFCPYCAERPKLRATDLFSPAETEIDHVIERRMGGDGPDNLVLAHKDCNNAKG
    KKTPHEHAGDLLDSPALAALWQGWRKENADRLKGKGHKARTPREDKDFMDRVGWRFEEDARAKA
    EENQERRGRRMLHDTARATRLARLYLAAAVMPEDPAEIGAPPVETPPSPEDPTGYTAIYRTISR
    VQPVNGSVTHMLRQRLLQRDKNRDYQTHHAEDACLLLLAGPAVVQAFNTEAAQHGADAPDDRPV
    DLMPTSDAYHQQRRARALGRVPLATVDAALADIVMPESDRQDPETGRVHWRLTRAGRGLKRRID
    DLTRNCVILSRPRRPSETGTPGALHNATHYGRREITVDGRTDTVVTQRMNARDLVALLDNAKIV
    PAARLDAAAPGDTILKEIGTEIADRHDRVVDPEGTHARRWISARLAALVPAHAEAVARDIAELA
    DLDALADADRTPEQEARRSALRQSPYLGRAISAKKADGRARAREQEILTRALLDPHWGPRGLRH
    LIMREARAPSLVRIRANKTDAFGRPVPDAAVWVKTDGNAVSQLWRLTSVVTDDGRRIPLPKPIE
    KRIEISNLEYARLNGLDEGAGVTGNNAPPRPLRQDIDRLTPLWRDHGTAPGGYLGTAVGELEDK
    ARSALRGKAMRQTLTDAGITAEAGWRLDSEGAVCDLEVAKGDTVKKDGKTYKVGVITQGIFGMP
    VDAAGSAPRTPEDCEKFEEQYGIKPWKAKGIPLA
    SEQ ID NO: 343
    MNYTEKEKLFMKYILALDIGIASVGWAILDKESETVIEAGSNIFPEASAADNQLRRDMRGAKRN
    NRRLKTRINDFIKLWENNNLSIPQFKSTEIVGLKVRAITEEITLDELYLILYSYLKHRGISYLE
    DALDDTVSGSSAYANGLKLNAKELETHYPCEIQQERLNTIGKYRGQSQIINENGEVLDLSNVFT
    IGAYRKEIQRVFEIQKKYHPELTDEFCDGYMLIFNRKRKYYEGPGNEKSRTDYGRFTTKLDANG
    NYITEDNIFEKLIGKCSVYPDELRAAAASYTAQEYNVLNDLNNLTINGRKLEENEKHEIVERIK
    SSNTINMRKIISDCMGENIDDFAGARIDKSGKEIFHKFEVYNKMRKALLEIGIDISNYSREELD
    EIGYIMTINTDKEAMMEAFQKSWIDLSDDVKQCLINMRKTNGALFNKWQSFSLKIMNELIPEMY
    AQPKEQMTLLTEMGVTKGTQEEFAGLKYIPVDVVSEDIFNPVVRRSVRISFKILNAVLKKYKAL
    DTIVIEMPRDRNSEEQKKRINDSQKLNEKEMEYIEKKLAVTYGIKLSPSDFSSQKQLSLKLKLW
    NEQDGICLYSGKTIDPNDIINNPQLFEIDHIIPRSISFDDARSNKVLVYRSENQKKGNQTPYYY
    LTHSHSEWSFEQYKATVMNLSKKKEYAISRKKIQNLLYSEDITKMDVLKGFINRNINDTSYASR
    LVLNTIQNFFMANEADTKVKVIKGSYTHQMRCNLKLDKNRDESYSHHAVDAMLIGYSELGYEAY
    HKLQGEFIDFETGEILRKDMWDENMSDEVYADYLYGKKWANIRNEVVKAEKNVKYWHYVMRKSN
    RGLCNQTIRGTREYDGKQYKINKLDIRTKEGIKVFAKLAFSKKDSDRERLLVYLNDRRTFDDLC
    KIYEDYSDAANPFVQYEKETGDIIRKYSKKHNGPRIDKLKYKDGEVGACIDISHKYGFEKGSKK
    VILESLVPYRMDVYYKEENHSYYLVGVKQSDIKFEKGRNVIDEEAYARILVNEKMIQPGQSRAD
    LENLGFKFKLSFYKNDIIEYEKDGKIYTERLVSRTMPKQRNYIETKPIDKAKFEKQNLVGLGKT
    KFIKKYRYDILGNKYSCSEEKFTSFC
    SEQ ID NO: 344
    MLRLYCANNLVLNNVQNLWKYLLLLIFDKKIIFLFKIKVILIRRYMENNNKEKIVIGFDLGVAS
    VGWSIVNAETKEVIDLGVRLFSEPEKADYRRAKRTTRRLLRRKKFKREKFHKLILKNAEIFGLQ
    SRNEILNVYKDQSSKYRNILKLKINALKEEIKPSELVWILRDYLQNRGYFYKNEKLTDEFVSNS
    FPSKKLHEHYEKYGFFRGSVKLDNKLDNKKDKAKEKDEEEESDAKKESEELIFSNKQWINEIVK
    VFENQSYLTESFKEEYLKLFNYVRPFNKGPGSKNSRTAYGVFSTDIDPETNKFKDYSNIWDKTI
    GKCSLFEEEIRAPKNLPSALIFNLQNEICTIKNEFTEFKNWWLNAEQKSEILKFVFTELFNWKD
    KKYSDKKFNKNLQDKIKKYLLNFALENFNLNEEILKNRDLENDTVLGLKGVKYYEKSNATADAA
    LEFSSLKPLYVFIKFLKEKKLDLNYLLGLENTEILYFLDSIYLAISYSSDLKERNEWFKKLLKE
    LYPKIKNNNLEIIENVEDIFEITDQEKFESFSKTHSLSREAFNHIIPLLLSNNEGKNYESLKHS
    NEELKKRTEKAELKAQQNQKYLKDNFLKEALVPLSVKTSVLQAIKIFNQIIKNFGKKYEISQVV
    IEMARELTKPNLEKLLNNATNSNIKILKEKLDQTEKFDDFTKKKFIDKIENSVVFRNKLFLWFE
    QDRKDPYTQLDIKINEIEDETEIDHVIPYSKSADDSWFNKLLVKKSTNQLKKNKTVWEYYQNES
    DPEAKWNKFVAWAKRIYLVQKSDKESKDNSEKNSIFKNKKPNLKFKNITKKLFDPYKDLGFLAR
    NLNDTRYATKVFRDQLNNYSKHHSKDDENKLFKVVCMNGSITSFLRKSMWRKNEEQVYRFNFWK
    KDRDQFFHHAVDASIIAIFSLLTKTLYNKLRVYESYDVQRREDGVYLINKETGEVKKADKDYWK
    DQHNFLKIRENAIEIKNVLNNVDFQNQVRYSRKANTKLNTQLFNETLYGVKEFENNFYKLEKVN
    LFSRKDLRKFILEDLNEESEKNKKNENGSRKRILTEKYIVDEILQILENEEFKDSKSDINALNK
    YMDSLPSKFSEFFSQDFINKCKKENSLILTFDAIKHNDPKKVIKIKNLKFFREDATLKNKQAVH
    KDSKNQIKSFYESYKCVGFIWLKNKNDLEESIFVPINSRVIHFGDKDKDIFDEDSYNKEKLLNE
    INLKRPENKKFNSINEIEFVKFVKPGALLLNFENQQIYYISTLESSSLRAKIKLLNKMDKGKAV
    SMKKITNPDEYKIIEHVNPLGINLNWTKKLENNN
    SEQ ID NO: 345
    MLMSKHVLGLDLGVGSIGWCLIALDAQGDPAEILGMGSRVVPLNNATKAIEAFNAGAAFTASQE
    RTARRTMRRGFARYQLRRYRLRRELEKVGMLPDAALIQLPLLELWELRERAATAGRRLTLPELG
    RVLCHINQKRGYRHVKSDAAAIVGDEGEKKKDSNSAYLAGIRANDEKLQAEHKTVGQYFAEQLR
    QNQSESPTGGISYRIKDQIFSRQCYIDEYDQIMAVQRVHYPDILTDEFIRMLRDEVIEMQRPLK
    SCKHLVSLCEFEKQERVMRVQQDDGKGGWQLVERRVKFGPKVAPKSSPLFQLCCIYEAVNNIRL
    TRPNGSPCDITPEERAKIVAHLQSSASLSFAALKKLLKEKALIADQLTSKSGLKGNSTRVALAS
    ALQPYPQYHHLLDMELETRMMTVQLTDEETGEVTEREVAVVTDSYVRKPLYRLWHILYSIEERE
    AMRRALITQLGMKEEDLDGGLLDQLYRLDFVKPGYGNKSAKFICKLLPQLQQGLGYSEACAAVG
    YRHSNSPTSEEITERTLLEKIPLLQRNELRQPLVEKILNQMINLVNALKAEYGIDEVRVELARE
    LKMSREERERMARNNKDREERNKGVAAKIRECGLYPTKPRIQKYMLWKEAGRQCLYCGRSIEEE
    QCLREGGMEVEHIIPKSVLYDDSYGNKTCACRRCNKEKGNRTALEYIRAKGREAEYMKRINDLL
    KEKKISYSKHQRLRWLKEDIPSDFLERQLRLTQYISRQAMAILQQGIRRVSASEGGVTARLRSL
    WGYGKILHTLNLDRYDSMGETERVSREGEATEELHITNWSKRMDHRHHAIDALVVACTRQSYIQ
    RLNRLSSEFGREDKKKEDQEAQEQQATETGRLSNLERWLTQRPHFSVRTVSDKVAEILISYRPG
    QRVVTRGRNIYRKKMADGREVSCVQRGVLVPRGELMEASFYGKILSQGRVRIVKRYPLHDLKGE
    VVDPHLRELITTYNQELKSREKGAPIPPLCLDKDKKQEVRSVRCYAKTLSLDKAIPMCFDEKGE
    PTAFVKSASNHHLALYRTPKGKLVESIVTFWDAVDRARYGIPLVITHPREVMEQVLQRGDIPEQ
    VLSLLPPSDWVFVDSLQQDEMVVIGLSDEELQRALEAQNYRKISEHLYRVQKMSSSYYVFRYHL
    ETSVADDKNTSGRIPKFHRVQSLKAYEERNIRKVRVDLLGRISLL
    SEQ ID NO: 346
    MSDLVLGLDIGIGSVGVGILNKVTGEIIHKNSRIFPAAQAENNLVRRTNRQGRRLARRKKHRRV
    RLNRLFEESGLITDFTKISINLNPYQLRVKGLTDELSNEELFIALKNMVKHRGISYLDDASDDG
    NSSVGDYAQIVKENSKQLETKTPGQIQLERYQTYGQLRGDFTVEKDGKKHRLINVFPTSAYRSE
    ALRILQTQQEFNPQITDEFINRYLEILTGKRKYYHGPGNEKSRTDYGRYRTSGETLDNIFGILI
    GKCTFYPDEFRAAKASYTAQEFNLLNDLNNLTVPTETKKLSKEQKNQIINYVKNEKAMGPAKLF
    KYIAKLLSCDVADIKGYRIDKSGKAEIHTFEAYRKMKTLETLDIEQMDRETLDKLAYVLTLNTE
    REGIQEALEHEFADGSFSQKQVDELVQFRKANSSIFGKGWHNFSVKLMMELIPELYETSEEQMT
    ILTRLGKQKTTSSSNKTKYIDEKLLTEEIYNPVVAKSVRQAIKIVNAAIKEYGDFDNIVIEMAR
    ETNEDDEKKAIQKIQKANKDEKDAAMLKAANQYNGKAELPHSVFHGHKQLATKIRLWHQQGERC
    LYTGKTISIHDLINNSNQFEVDHILPLSITFDDSLANKVLVYATANQEKGQRTPYQALDSMDDA
    WSFRELKAFVRESKTLSNKKKEYLLTEEDISKFDVRKKFIERNLVDTRYASRVVLNALQEHFRA
    HKIDTKVSVVRGQFTSQLRRHWGIEKTRDTYHHHAVDALIIAASSQLNLWKKQKNTLVSYSEDQ
    LLDIETGELISDDEYKESVFKAPYQHFVDTLKSKEFEDSILFSYQVDSKFNRKISDATIYATRQ
    AKVGKDKADETYVLGKIKDIYTQDGYDAFMKIYKKDKSKFLMYRHDPQTFEKVIEPILENYPNK
    QINEKGKEVPCNPFLKYKEEHGYIRKYSKKGNGPEIKSLKYYDSKLGNHIDITPKDSNNKVVLQ
    SVSPWRADVYFNKTTGKYEILGLKYADLQFEKGTGTYKISQEKYNDIKKKEGVDSDSEFKFTLY
    KNDLLLVKDTETKEQQLFRFLSRTMPKQKHYVELKPYDKQKFEGGEALIKVLGNVANSGQCKKG
    LGKSNISIYKVRTDVLGNQHIIKNEGDKPKLDF
    SEQ ID NO: 347
    MNAEHGKEGLLIMEENFQYRIGLDIGITSVGWAVLQNNSQDEPVRITDLGVRIFDVAENPKNGD
    ALAAPRRDARTTRRRLRRRRHRLERIKFLLQENGLIEMDSFMERYYKGNLPDVYQLRYEGLDRK
    LKDEELAQVLIHIAKHRGFRSTRKAETKEKEGGAVLKATTENQKIMQEKGYRTVGEMLYLDEAF
    HTECLWNEKGYVLTPRNRPDDYKHTILRSMLVEEVHAIFAAQRAHGNQKATEGLEEAYVEIMTS
    QRSFDMGPGLQPDGKPSPYAMEGFGDRVGKCTFEKDEYRAPKATYTAELFVALQKINHTKLIDE
    FGTGRFFSEEERKTIIGLLLSSKELKYGTIRKKLNIDPSLKFNSLNYSAKKEGETEEERVLDTE
    KAKFASMFWTYEYSKCLKDRTEEMPVGEKADLFDRIGEILTAYKNDDSRSSRLKELGLSGEEID
    GLLDLSPAKYQRVSLKAMRKMQPYLEDGLIYDKACEAAGYDFRALNDGNKKHLLKGEEINAIVN
    DITNPVVKRSVSQTIKVINAIIQKYGSPOAVNIELAREMSKNFODRTNLEKEMKKROQENERAK
    QQIIELGKQNPTGQDILKYRLWNDQGGYCLYSGKKIPLEELFDGGYDIDHILPYSITFDDSYRN
    KVLVTAQENRQKGNRTPYEYFGADEKRWEDYEASVRLLVRDYKKQQKLLKKNFTEEERKEFKER
    NLNDTKYITRVVYNMIRQNLELEPFNHPEKKKQVWAVNGAVTSYLRKRWGLMQKDRSTDRHHAM
    DAVVIACCTDGMIHKISRYMQGRELAYSRNFKFPDEETGEILNRDNFTREQWDEKFGVKVPLPW
    NSFRDELDIRLLNEDPKNFLLTHADVQRELDYPGWMYGEEESPIEEGRYINYIRPLFVSRMPNH
    KVTGSAHDATIRSARDYETRGVVITKVPLTDLKLNKDNEIEGYYDKDSDRLLYQALVRQLLLHG
    NDGKKAFAEDFHKPKADGTEGPVVRKVKIEKKQTSGVMVRGGTGIAANGEMVRIDVFRENGKYY
    FVPVYTADVVRKVLPNRAATHTKPYSEWRVMDDANFVFSLYSRDLIHVKSKKDIKTNLVNGGLL
    LQKEIFAYYTGADIATASIAGFANDSNFKFRGLGIQSLEIFEKCQVDILGNISVVRHENRQEFH
    SEQ ID NO: 348
    MRVLGLDAGIASLGWALIEIEESNRGELSQGTIIGAGTWMFDAPEEKTQAGAKLKSEQRRTFRG
    QRRVVRRRRQRMNEVRRILHSHGLLPSSDRDALKQPGLDPWRIRAEALDRLLGPVELAVALGHI
    ARHRGFKSNSKGAKTNDPADDTSKMKRAVNETREKLARFGSAAKMLVEDESFVLRQTPTKNGAS
    EIVRRFRNREGDYSRSLLRDDLAAEMRALFTAQARFQSAIATADLQTAFTKAAFFQRPLQDSEK
    LVGPCPFEVDEKRAPKRGYSFELFRFLSRLNHVTLRDGKQERTLTRDELALAAADFGAAAKVSF
    TALRKKLKLPETTVFVGVKADEESKLDVVARSGKAAEGTARLRSVIVDALGELAWGALLCSPEK
    LDKIAEVISFRSDIGRISEGLAQAGCNAPLVDALTAAASDGRFDPFTGAGHISSKAARNILSGL
    RQGMTYDKACCAADYDHTASRERGAFDVGGHGREALKRILQEERISRELVGSPTARKALIESIK
    QVKAIVERYGVPDRIHVELARDVGKSIEEREEITRGIEKRNRQKDKLRGLFEKEVGRPPQDGAR
    GKEELLRFELWSEQMGRCLYTDDYISPSQLVATDDAVQVDHILPWSRFADDSYANKTLCMAKAN
    QDKKGRTPYEWFKAEKTDTEWDAFIVRVEALADMKGFKKRNYKLRNAEEAAAKFRNRNLNDTRW
    ACRLLAEALKQLYPKGEKDKDGKERRRVFSRPGALTDRLRRAWGLQWMKKSTKGDRIPDDRHHA
    LDAIVIAATTESLLQRATREVQEIEDKGLHYDLVKNVTPPWPGFREQAVEAVEKVFVARAERRR
    ARGKAHDATIRHIAVREGEQRVYERRKVAELKLADLDRVKDAERNARLIEKLRNWIEAGSPKDD
    PPLSPKGDPIFKVRLVTKSKVNIALDTGNPKRPGTVDRGEMARVDVFRKASKKGKYEYYLVPIY
    PHDIATMKTPPIRAVQAYKPEDEWPEMDSSYEFCWSLVPMTYLQVISSKGEIFEGYYRGMNRSV
    GAIQLSAHSNSSDVVQGIGARTLTEFKKFNVDRFGRKHEVERELRTWRGETWRGKAYI
    SEQ ID NO: 349
    MGNYYLGLDVGIGSIGWAVINIEKKRIEDFNVRIFKSGEIQEKNRNSRASQQCRRSRGLRRLYR
    RKSHRKLRLKNYLSIIGLTTSEKIDYYYETADNNVIQLRNKGLSEKLTPEEIAACLIHICNNRG
    YKDFYEVNVEDIEDPDERNEYKEEHDSIVLISNLMNEGGYCTPAEMICNCREFDEPNSVYRKFH
    NSAASKNHYLITRHMLVKEVDLILENQSKYYGILDDKTIAKIKDIIFAQRDFEIGPGKNERFRR
    FTGYLDSIGKCQFFKDQERGSRFTVIADIYAFVNVLSQYTYTNNRGESVFDTSFANDLINSALK
    NGSMDKRELKAIAKSYHIDISDKNSDTSLTKCFKYIKVVKPLFEKYGYDWDKLIENYTDTDNNV
    LNRIGIVLSQAQTPKRRREKLKALNIGLDDGLINELTKLKLSGTANVSYKYMQGSIEAFCEGDL
    YGKYQAKFNKEIPDIDENAKPQKLPPFKNEDDCEFFKNPVVFRSINETRKLINAIIDKYGYPAA
    VNIETADELNKTFEDRAIDTKRNNDNQKENDRIVKEIIECIKCDEVHARHLIEKYKLWEAQEGK
    CLYSGETITKEDMLRDKDKLFEVDHIVPYSLILDNTINNKALVYAEENQKKGQRTPLMYMNEAQ
    AADYRVRVNTMFKSKKCSKKKYQYLMLPDLNDQELLGGWRSRNLNDTRYICKYLVNYLRKNLRF
    DRSYESSDEDDLKIRDHYRVFPVKSRFTSMFRRWWLNEKTWGRYDKAELKKLTYLDHAADAIII
    ANCRPEYVVLAGEKLKLNKMYHQAGKRITPEYEQSKKACIDNLYKLFRMDRRTAEKLLSGHGRL
    TPIIPNLSEEVDKRLWDKNIYEQFWKDDKDKKSCEELYRENVASLYKGDPKFASSLSMPVISLK
    PDHKYRGTITGEEAIRVKEIDGKLIKLKRKSISEITAESINSIYTDDKILIDSLKTIFEQADYK
    DVGDYLKKTNQHFFTTSSGKRVNKVTVIEKVPSRWLRKEIDDNNFSLLNDSSYYCIELYKDSKG
    DNNLQGIAMSDIVHDRKTKKLYLKPDFNYPDDYYTHVMYIFPGDYLRIKSTSKKSGEQLKFEGY
    FISVKNVNENSFRFISDNKPCAKDKRVSITKKDIVIKLAVDLMGKVQGENNGKGISCGEPLSLL
    KEKN
    SEQ ID NO: 350
    MLSRQLLGASHLARPVSYSYNVQDNDVHCSYGERCFMRGKRYRIGIDVGLNSVGLAAVEVSDEN
    SPVRLLNAQSVIHDGGVDPQKNKEAITRKNMSGVARRTRRMRRRKRERLHKLDMLLGKFGYPVI
    EPESLDKPFEEWHVRAELATRYIEDDELRRESISIALRHMARHRGWRNPYRQVDSLISDNPYSK
    QYGELKEKAKAYNDDATAAEEESTPAQLVVAMLDAGYAEAPRLRWRTGSKKPDAEGYLPVRLMQ
    EDNANELKQIFRVQRVPADEWKPLFRSVFYAVSPKGSAEQRVGQDPLAPEQARALKASLAFQEY
    RIANVITNLRIKDASAELRKLTVDEKQSIYDQLVSPSSEDITWSDLCDFLGFKRSQLKGVGSLT
    EDGEERISSRPPRLTSVQRIYESDNKIRKPLVAWWKSASDNEHEAMIRLLSNTVDIDKVREDVA
    YASAIEFIDGLDDDALTKLDSVDLPSGRAAYSVETLQKLTRQMLTTDDDLHEARKTLFNVTDSW
    RPPADPIGEPLGNPSVDRVLKNVNRYLMNCQQRWGNPVSVNIEHVRSSFSSVAFARKDKREYEK
    NNEKRSIFRSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRK
    GVGSTNTRTNFAAVCAECNRMKSNTPFAIWARSEDAQTRGVSLAEAKKRVTMFTFNPKSYAPRE
    VKAFKQAVIARLQQTEDDAAIDNRSIESVAWMADELHRRIDWYFNAKQYVNSASIDDAEAETMK
    TTVSVFQGRVTASARRAAGIEGKIHFIGQQSKTRLDRRHHAVDASVIAMMNTAAAQTLMERESL
    RESQRLIGLMPGERSWKEYPYEGTSRYESFHLWLDNMDVLLELLNDALDNDRIAVMQSQRYVLG
    NSIAHDATIHPLEKVPLGSAMSADLIRRASTPALWCALTRLPDYDEKEGLPEDSHREIRVHDTR
    YSADDEMGFFASQAAQIAVQEGSADIGSAIHHARVYRCWKTNAKGVRKYFYGMIRVFQTDLLRA
    CHDDLFTVPLPPQSISMRYGEPRVVQALQSGNAQYLGSLVVGDEIEMDFSSLDVDGQIGEYLQF
    FSQFSGGNLAWKHWVVDGFFNQTQLRIRPRYLAAEGLAKAFSDDVVPDGVQKIVTKQGWLPPVN
    TASKTAVRIVRRNAFGEPRLSSAHHMPCSWQWRHE
    SEQ ID NO: 351
    MYSIGLDLGISSVGWSVIDERTGNVIDLGVRLFSAKNSEKNLERRTNRGGRRLIRRKTNRLKDA
    KKILAAVGFYEDKSLKNSCPYQLRVKGLTEPLSRGEIYKVTLHILKKRGISYLDEVDTEAAKES
    QDYKEQVRKNAQLLTKYTPGQIQLQRLKENNRVKTGINAQGNYQLNVFKVSAYANELATILKTQ
    QAFYPNELTDDWIALFVQPGIAEEAGLIYRKRPYYHGPGNEANNSPYGRWSDFQKTGEPATNIF
    DKLIGKDFQGELRASGLSLSAQQYNLLNDLTNLKIDGEVPLSSEQKEYILTELMTKEFTRFGVN
    DVVKLLGVKKERLSGWRLDKKGKPEIHTLKGYRNWRKIFAEAGIDLATLPTETIDCLAKVLTLN
    TEREGIENTLAFELPELSESVKLLVLDRYKELSQSISTQSWHRFSLKTLHLLIPELMNATSEQN
    TLLEQFQLKSDVRKRYSEYKKLPTKDVLAEIYNPTVNKTVSQAFKVIDALLVKYGKEQIRYITI
    EMPRDDNEEDEKKRIKELHAKNSQRKNDSQSYFMQKSGWSQEKFQTTIQKNRRFLAKLLYYYEQ
    DGICAYTGLPISPELLVSDSTEIDHIIPISISLDDSINNKVLVLSKANQVKGQQTPYDAWMDGS
    FKKINGKFSNWDDYQKWVESRHFSHKKENNLLETRNIFDSEQVEKFLARNLNDTRYASRLVLNT
    LQSFFTNQETKVRVVNGSFTHTLRKKWGADLDKTRETHHHHAVDATLCAVTSFVKVSRYHYAVK
    EETGEKVMREIDFETGEIVNEMSYWEFKKSKKYERKTYQVKWPNFREQLKPVNLHPRIKFSHQV
    DRKANRKLSDATIYSVREKTEVKTLKSGKQKITTDEYTIGKIKDIYTLDGWEAFKKKQDKLLMK
    DLDEKTYERLLSIAETTPDFQEVEEKNGKVKRVKRSPFAVYCEENDIPAIQKYAKKNNGPLIRS
    LKYYDGKLNKHINITKDSQGRPVEKTKNGRKVTLQSLKPYRYDIYQDLETKAYYTVQLYYSDLR
    FVEGKYGITEKEYMKKVAEQTKGQVVRFCFSLQKNDGLEIEWKDSQRYDVRFYNFQSANSINFK
    GLEQEMMPAENQFKQKPYNNGAINLNIAKYGKEGKKLRKFNTDILGKKHYLFYEKEPKNIIK
    SEQ ID NO: 352
    MYFYKNKENKLNKKVVLGLDLGIASVGWCLTDISQKEDNKFPIILHGVRLFETVDDSDDKLLNE
    TRRKKRGQRRRNRRLFTRKRDFIKYLIDNNIIELEFDKNPKILVRNFIEKYINPFSKNLELKYK
    SVTNLPIGFHNLRKAAINEKYKLDKSELIVLLYEYLSLRGAFFDNPEDTKSKEMNKNEIEIEDK
    NESIKNAEFPIDKIIEFYKISGKIRSTINLKFGHQDYLKEIKQVFEKQNIDFMNYEKFAMEEKS
    FFSRIRNYSEGPGNEKSFSKYGLYANENGNPELIINEKGQKIYTKIFKTLWESKIGKCSYDKKL
    YRAPKNSFSAKVFDITNKLTDWKHKNEYISERLKRKILLSRFLNKDSKSAVEKILKEENIKFEN
    LSEIAYNKDDNKINLPIINAYHSLTTIFKKHLINFENYLISNENDLSKLMSFYKQQSEKLFVPN
    EKGSYEINQNNNVLHIFDAISNILNKFSTIQDRIRILEGYFEFSNLKKDVKSSEIYSEIAKLRE
    FSGTSSLSFGAYYKFIPNLISEGSKNYSTISYEEKALQNQKNNFSHSNLFEKTWVEDLIASPTV
    KRSLRQTMNLLKEIFKYSEKNNLEIEKIVVEVTRSSNNKHERKKIEGINKYRKEKYEELKKVYD
    LPNENTTLLKKLWLLRQQQGYDAYSLRKIEANDVINKPWNYDIDHIVPRSISFDDSFSNLVIVN
    KLDNAKKSNDLSAKQFIEKIYGIEKLKEAKENWGNWYLRNANGKAFNDKGKFIKLYTIDNLDEF
    DNSDFINRNLSDTSYITNALVNHLTFSNSKYKYSVVSVNGKQTSNLRNQIAFVGIKNNKETERE
    WKRPEGFKSINSNDFLIREEGKNDVKDDVLIKDRSFNGHHAEDAYFITIISQYFRSFKRIERLN
    VNYRKETRELDDLEKNNIKFKEKASFDNFLLINALDELNEKLNQMRFSRMVITKKNTQLFNETL
    YSGKYDKGKNTIKKVEKLNLLDNRTDKIKKIEEFFDEDKLKENELTKLHIFNHDKNLYETLKII
    WNEVKIEIKNKNLNEKNYFKYFVNKKLQEGKISFNEWVPILDNDFKIIRKIRYIKFSSEEKETD
    EIIFSQSNFLKIDQRQNFSFHNTLYWVQIWVYKNQKDQYCFISIDARNSKFEKDEIKINYEKLK
    TQKEKLQIINEEPILKINKGDLFENEEKELFYIVGRDEKPQKLEIKYILGKKIKDQKQIQKPVK
    KYFPNWKKVNLTYMGEIFKK
    SEQ ID NO: 353
    MDNKNYRIGIDVGLNSIGFCAVEVDQHDTPLGFLNLSVYRHDAGIDPNGKKTNTTRLAMSGVAR
    RTRRLFRKRKRRLAALDRFIEAQGWTLPDHADYKDPYTPWLVRAELAQTPIRDENDLHEKLAIA
    VRHIARHRGWRSPWVPVRSLHVEQPPSDQYLALKERVEAKTLLQMPEGATPAEMVVALDLSVDV
    NLRPKNREKTDTRPENKKPGFLGGKLMQSDNANELRKIAKIQGLDDALLRELIELVFAADSPKG
    ASGELVGYDVLPGQHGKRRAEKAHPAFQRYRIASIVSNLRIRHLGSGADERLDVETQKRVFEYL
    LNAKPTADITWSDVAEEIGVERNLLMGTATQTADGERASAKPPVDVTNVAFATCKIKPLKEWWL
    NADYEARCVMVSALSHAEKLTEGTAAEVEVAEFLQNLSDEDNEKLDSFSLPIGRAAYSVDSLER
    LTKRMIENGEDLFEARVNEFGVSEDWRPPAEPIGARVGNPAVDRVLKAVNRYLMAAEAEWGAPL
    SVNIEHVREGFISKRQAVEIDRENQKRYQRNQAVRSQIADHINATSGVRGSDVTRYLAIQRQNG
    ECLYCGTAITFVNSEMDHIVPRAGLGSTNTRDNLVATCERCNKSKSNKPFAVWAAECGIPGVSV
    AEALKRVDFWIADGFASSKEHRELQKGVKDRLKRKVSDPEIDNRSMESVAWMARELAHRVQYYF
    DEKHTGTKVRVFRGSLTSAARKASGFESRVNFIGGNGKTRLDRRHHAMDAATVAMLRNSVAKTL
    VLRGNIRASERAIGAAETWKSFRGENVADRQIEESWSENMRVLVEKFNLALYNDEVSIESSLRL
    QLGNGKAHDDTITKLQMHKVGDAWSLTEIDRASTPALWCALTRQPDFTWKDGLPANEDRTIIVN
    GTHYGPLDKVGIFGKAAASLLVRGGSVDIGSAIHHARIYRIAGKKPTYGMVRVFAPDLLRYRNE
    DLFNVELPPQSVSMRYAEPKVREAIREGKAEYLGWLVVGDELLLDLSSETSGQIAELQQDFPGT
    THWTVAGFFSPSRLRLRPVYLAQEGLGEDVSEGSKSIIAGQGWRPAVNKVFGSAMPEVIRRDGL
    GRKRRFSYSGLPVSWQG
    SEQ ID NO: 354
    MRLGLDIGTSSIGWWLYETDGAGSDARITGVVDGGVRIFSDGRDPKSGASLAVDRRAARAMRRR
    RDRYLRRRATLMKVLAETGLMPADPAEAKALEALDPFALRAAGLDEPLPLPHLGRALFHLNQRR
    GFKSNRKTDRGDNESGKIKDATARLDMEMMANGARTYGEFLHKRRQKATDPRHVPSVRTRLSIA
    NRGGPDGKEEAGYDFYPDRRHLEEEFHKLWAAQGAHHPELTETLRDLLFEKIFFQRPLKEPEVG
    LCLFSGHHGVPPKDPRLPKAHPLTQRRVLYETVNQLRVTADGREARPLTREERDQVIHALDNKK
    PTKSLSSMVLKLPALAKVLKLRDGERFTLETGVRDAIACDPLRASPAHPDRFGPRWSILDADAQ
    WEVISRIRRVQSDAEHAALVDWLTEAHGLDRAHAEATAHAPLPDGYGRLGLTATTRILYQLTAD
    VVTYADAVKACGWHHSDGRTGECFDRLPYYGEVLERHVIPGSYHPDDDDITRFGRITNPTVHIG
    LNQLRRLVNRIIETHGKPHQIVVELARDLKKSEEQKRADIKRIRDTTEAAKKRSEKLEELEIED
    NGRNRMLLRLWEDLNPDDAMRRFCPYTGTRISAAMIFDGSCDVDHILPYSRTLDDSFPNRTLCL
    REANRQKRNQTPWQAWGDTPHWHAIAANLKNLPENKRWRFAPDAMTRFEGENGFLDRALKDTQY
    LARISRSYLDTLFTKGGHVWVVPGRFTEMLRRHWGLNSLLSDAGRGAVKAKNRTDHRHHAIDAA
    VIAATDPGLLNRISRAAGQGEAAGQSAELIARDTPPPWEGFRDDLRVRLDRIIVSHRADHGRID
    HAARKQGRDSTAGQLHQETAYSIVDDIHVASRTDLLSLKPAQLLDEPGRSGQVRDPQLRKALRV
    ATGGKTGKDFENALRYFASKPGPYQAIRRVRIIKPLQAQARVPVPAQDPIKAYQGGSNHLFEIW
    RLPDGEIEAQVITSFEAHTLEGEKRPHPAAKRLLRVHKGDMVALERDGRRVVGHVQKMDIANGL
    FIVPHNEANADTRNNDKSDPFKWIQIGARPAIASGIRRVSVDEIGRLRDGGTRPI
    SEQ ID NO: 355
    MLHCIAVIRVPPSEEPGFFETHADSCALCHHGCMTYAANDKAIRYRVGIDVGLRSIGFCAVEVD
    DEDHPIRILNSVVHVHDAGTGGPGETESLRKRSGVAARARRRGRAEKQRLKKLDVLLEELGWGV
    SSNELLDSHAPWHIRKRLVSEYIEDETERRQCLSVAMAHIARHRGWRNSFSKVDTLLLEQAPSD
    RMQGLKERVEDRTGLQFSEEVTQGELVATLLEHDGDVTIRGFVRKGGKATKVHGVLEGKYMQSD
    LVAELRQICRTQRVSETTFEKLVLSIFHSKEPAPSAARQRERVGLDELQLALDPAAKQPRAERA
    HPAFQKFKVVATLANMRIREQSAGERSLTSEELNRVARYLLNHTESESPTWDDVARKLEVPRHR
    LRGSSRASLETGGGLTYPPVDDTTVRVMSAEVDWLADWWDCANDESRGHMIDAISNGCGSEPDD
    VEDEEVNELISSATAEDMLKLELLAKKLPSGRVAYSLKTLREVTAAILETGDDLSQAITRLYGV
    DPGWVPTPAPIEAPVGNPSVDRVLKQVARWLKFASKRWGVPQTVNIEHTREGLKSASLLEEERE
    RWERFEARREIRQKEMYKRLGISGPFRRSDQVRYEILDLQDCACLYCGNEINFQTFEVDHIIPR
    VDASSDSRRTNLAAVCHSCNSAKGGLAFGQWVKRGDCPSGVSLENAIKRVRSWSKDRLGLTEKA
    MGKRKSEVISRLKTEMPYEEFDGRSMESVAWMAIELKKRIEGYFNSDRPEGCAAVQVNAYSGRL
    TACARRAAHVDKRVRLIRLKGDDGHHKNRFDRRNHAMDALVIALMTPAIARTIAVREDRREAQQ
    LTRAFESWKNFLGSEERMQDRWESWIGDVEYACDRLNELIDADKIPVTENLRLRNSGKLHADQP
    ESLKKARRGSKRPRPQRYVLGDALPADVINRVTDPGLWTALVRAPGFDSQLGLPADLNRGLKLR
    GKRISADFPIDYFPTDSPALAVQGGYVGLEFHHARLYRIIGPKEKVKYALLRVCAIDLCGIDCD
    DLFEVELKPSSISMRTADAKLKEAMGNGSAKQIGWLVLGDEIQIDPTKFPKQSIGKELKECGPV
    SSWRVSALDTPSKITLKPRLLSNEPLLKTSRVGGHESDLVVAECVEKIMKKTGWWEINALCQS
    GLIRVIRRNALGEVRTSPKSGLPISLNLR
    SEQ ID NO: 356
    MRYRVGLDLGTASVGAAVFSMDEQGNPMELIWHYERLFSEPLVPDMGQLKPKKAARRLARQQRR
    QIDRRASRLRRIAIVSRRLGIAPGRNDSGVHGNDVPTLRAMAVNERIELGQLRAVLLRMGKKRG
    YGGTFKAVRKVGEAGEVASGASRLEEEMVALASVQNKDSVTVGEYLAARVEHGLPSKLKVAANN
    EYYAPEYALFRQYLGLPAIKGRPDCLPNMYALRHQIEHEFERIWATQSQFHDVMKDHGVKEEIR
    NAIFFQRPLKSPADKVGRCSLQTNLPRAPRAQIAAQNFRIEKQMADLRWGMGRRAEMLNDHQKA
    VIRELLNQQKELSFRKIYKELERAGCPGPEGKGLNMDRAALGGRDDLSGNTTLAAWRKLGLEDR
    WQELDEVTQIQVINFLADLGSPEQLDTDDWSCRFMGKNGRPRNFSDEFVAFMNELRMTDGFDRL
    SKMGFEGGRSSYSIKALKALTEWMIAPHWRETPETHRVDEEAAIRECYPESLATPAQGGRQSKL
    EPPPLTGNEVVDVALRQVRHTINMMIDDLGSVPAQIVVEMAREMKGGVTRRNDIEKQNKRFASE
    RKKAAQSIEENGKTPTPARILRYQLWIEQGHQCPYCESNISLEQALSGAYTNFEHILPRTLTQI
    GRKRSELVLAHRECNDEKGNRTPYQAFGHDDRRWRIVEQRANALPKKSSRKTRLLLLKDFEGEA
    LTDESIDEFADRQLHESSWLAKVTTQWLSSLGSDVYVSRGSLTAELRRRWGLDTVIPQVRFESG
    MPVVDEEGAEITPEEFEKFRLQWEGHRVTREMRTDRRPDKRIDHRHHLVDAIVTALTSRSLYQQ
    YAKAWKVADEKQRHGRVDVKVELPMPILTIRDIALEAVRSVRISHKPDRYPDGRFFEATAYGIA
    QRLDERSGEKVDWLVSRKSLTDLAPEKKSIDVDKVRANISRIVGEAIRLHISNIFEKRVSKGMT
    PQQALREPIEFQGNILRKVRCFYSKADDCVRIEHSSRRGHHYKMLLNDGFAYMEVPCKEGILYG
    VPNLVRPSEAVGIKRAPESGDFIRFYKGDTVKNIKTGRVYTIKQILGDGGGKLILTPVTETKPA
    DLLSAKWGRLKVGGRNIHLLRLCAE
    SEQ ID NO: 357
    MIGEHVRGGCLFDDHWTPNWGAFRLPNTVRTFTKAENPKDGSSLAEPRRQARGLRRRLRRKTQR
    LEDLRRLLAKEGVLSLSDLETLFRETPAKDPYQLRAEGLDRPLSFPEWVRVLYHITKHRGFQSN
    RRNPVEDGQERSRQEEEGKLLSGVGENERLLREGGYRTAGEMLARDPKFQDHRRNRAGDYSHTL
    SRSLLLEEARRLFQSQRTLGNPHASSNLEEAFLHLVAFQNPFASGEDIRNKAGHCSLEPDQIRA
    PRRSASAETFMLLQKTGNLRLIHRRTGEERPLTDKEREQIHLLAWKQEKVTHKTLRRHLEIPEE
    WLFTGLPYHRSGDKAEEKLFVHLAGIHEIRKALDKGPDPAVWDTLRSRRDLLDSIADTLTFYKN
    EDEILPRLESLGLSPENARALAPLSFSGTAHLSLSALGKLLPHLEEGKSYTQARADAGYAAPPP
    DRHPKLPPLEEADWRNPVVFRALTQTRKVVNALVRRYGPPWCIHLETARELSQPAKVRRRIETE
    QQANEKKKQQAEREFLDIVGTAPGPGDLLKMRLWREQGGFCPYCEEYLNPTRLAEPGYAEMDHI
    LPYSRSLDNGWHNRVLVHGKDNRDKGNRTPFEAFGGDTARWDRLVAWVQASHLSAPKKRNLLRE
    DFGEEAERELKDRNLTDTRFITKTAATLLRDRLTFHPEAPKDPVMTLNGRLTAFLRKQWGLHKN
    RKNGDLHHALDAAVLAVASRSFVYRLSSHNAAWGELPRGREAENGFSLPYPAFRSEVLARLCPT
    REEILLRLDQGGVGYDEAFRNGLRPVFVSRAPSRRLRGKAHMETLRSPKWKDHPEGPRTASRIP
    LKDLNLEKLERMVGKDRDRKLYEALRERLAAFGGNGKKAFVAPFRKPCRSGEGPLVRSLRIFDS
    GYSGVELRDGGEVYAVADHESMVRVDVYAKKNRFYLVPVYVADVARGIVKNRAIVAHKSEEEWD
    LVDGSFDFRFSLFPGDLVEIEKKDGAYLGYYKSCHRGDGRLLLDRHDRMPRESDCGTFYVSTRK
    DVLSMSKYQVDPLGEIRLVGSEKPPFVL
    SEQ ID NO: 358
    MEKKRKVTLGFDLGIASVGWAIVDSETNQVYKLGSRLFDAPDTNLERRTQRGTRRLLRRRKYRN
    QKFYNLVKRTEVFGLSSREAIENRFRELSIKYPNIIELKTKALSQEVCPDEIAWILHDYLKNRG
    YFYDEKETKEDFDQQTVESMPSYKLNEFYKKYGYFKGALSQPTESEMKDNKDLKEAFFFDFSNK
    EWLKEINYFFNVQKNILSETFIEEFKKIFSFTRDISKGPGSDNMPSPYGIFGEFGDNGQGGRYE
    HIWDKNIGKCSIFTNEQRAPKYLPSALIFNFLNELANIRLYSTDKKNIQPLWKLSSVDKLNILL
    NLFNLPISEKKKKLTSTNINDIVKKESIKSIMISVEDIDMIKDEWAGKEPNVYGVGLSGLNIEE
    SAKENKFKFQDLKILNVLINLLDNVGIKFEFKDRNDIIKNLELLDNLYLFLIYQKESNNKDSSI
    DLEIAKNESLNIENLKLKLKEFLLGAGNEFENHNSKTHSLSKKAIDEILPKLLDNNEGWNLEAI
    KNYDEEIKSQIEDNSSLMAKQDKKYLNDNFLKDAILPPNVKVTFQQAILIFNKIIQKFSKDFEI
    DKVVIELAREMTQDQENDALKGIAKAQKSKKSLVEERLEANNIDKSVFNDKYEKLIYKIFLWIS
    QDFKDPYTGAQISVNEIVNNKVEIDHIIPYSLCFDDSSANKVLVHKQSNQEKSNSLPYEYIKQG
    HSGWNWDEFTKYVKRVFVNNVDSILSKKERLKKSENLLTASYDGYDKLGFLARNLNDTRYATIL
    FRDQLNNYAEHHLIDNKKMFKVIAMNGAVTSFIRKNMSYDNKLRLKDRSDFSHHAYDAAIIALF
    SNKTKTLYNLIDPSLNGIISKRSEGYWVIEDRYTGEIKELKKEDWTSIKNNVQARKIAKEIEEY
    LIDLDDEVFFSRKTKRKTNRQLYNETIYGIATKTDEDGITNYYKKEKFSILDDKDIYLRLLRER
    EKFVINQSNPEVIDQIIEIIESYGKENNIPSRDEAINIKYTKNKINYNLYLKQYMRSLTKSLDQ
    FSEEFINQMIANKTFVLYNPTKNTTRKIKFLRLVNDVKINDIRKNQVINKFNGKNNEPKAFYEN
    INSLGAIVFKNSANNFKTLSINTQIAIFGDKNWDIEDFKTYNMEKIEKYKEIYGIDKTYNFHSF
    IFPGTILLDKQNKEFYYISSIQTVRDIIEIKFLNKIEFKDENKNQDTSKTPKRLMFGIKSIMNN
    YEQVDISPFGINKKIFE
    SEQ ID NO: 359
    MGYRIGLDVGITSTGYAVLKTDKNGLPYKILTLDSVIYPRAENPQTGASLAEPRRIKRGLRRRT
    RRTKFRKQRTQQLFIHSGLLSKPEIEQILATPQAKYSVYELRVAGLDRRLTNSELFRVLYFFIG
    HRGFKSNRKAELNPENEADKKQMGQLLNSIEEIRKAIAEKGYRTVGELYLKDPKYNDHKRNKGY
    IDGYLSTPNRQMLVDEIKQILDKQRELGNEKLTDEFYATYLLGDENRAGIFQAQRDFDEGPGAG
    PYAGDQIKKMVGKDIFEPTEDRAAKATYTFQYFNLLQKMTSLNYQNTTGDTWHTLNGLDRQAII
    DAVFAKAEKPTKTYKPTDFGELRKLLKLPDDARFNLVNYGSLQTQKEIETVEKKTRFVDFKAYH
    DLVKVLPEEMWQSRQLLDHIGTALTLYSSDKRRRRYFAEELNLPAELIEKLLPLNFSKFGHLSI
    KSMQNIIPYLEMGQVYSEATTNTGYDFRKKQISKDTIREEITNPVVRRAVTKTIKIVEQIIRRY
    GKPDGINIELARELGRNFKERGDIQKRQDKNRQTNDKIAAELTELGIPVNGQNIIRYKLHKEQN
    GVDPYTGDQIPFERAFSEGYEVDHIIPYSISWDDSYTNKVLTSAKCNREKGNRIPMVYLANNEQ
    RLNALTNIADNIIRNSRKRQKLLKQKLSDEELKDWKQRNINDTRFITRVLYNYFRQAIEFNPEL
    EKKQRVLPLNGEVTSKIRSRWGFLKVREDGDLHHAIDATVIAAITPKFIQQVTKYSQHQEVKNN
    QALWHDAEIKDAEYAAEAQRMDADLFNKIFNGFPLPWPEFLDELLARISDNPVEMMKSRSWNTY
    TPIEIAKLKPVFVVRLANHKISGPAHLDTIRSAKLFDEKGIVLSRVSITKLKINKKGQVATGDG
    IYDPENSNNGDKVVYSAIRQALEAHNGSGELAFPDGYLEYVDHGTKKLVRKVRVAKKVSLPVRL
    KNKAAADNGSMVRIDVFNTGKKFVFVPIYIKDTVEQVLPNKAIARGKSLWYQITESDQFCFSLY
    PGDMVHIESKTGIKPKYSNKENNTSVVPIKNFYGYFDGADIATASILVRAHDSSYTARSIGIAG
    LLKFEKYQVDYFGRYHKVHEKKRQLFVKRDE
    SEQ ID NO: 360
    MQKNINTKQNHIYIKQAQKIKEKLGDKPYRIGLDLGVGSIGFAIVSMEENDGNVLLPKEIIMVG
    SRIFKASAGAADRKLSRGQRNNHRHTRERMRYLWKVLAEQKLALPVPADLDRKENSSEGETSAK
    RFLGDVLQKDIYELRVKSLDERLSLQELGYVLYHIAGHRGSSAIRTFENDSEEAQKENTENKKI
    AGNIKRLMAKKNYRTYGEYLYKEFFENKEKHKREKISNAANNHKFSPTRDLVIKEAEAILKKQA
    GKDGFHKELTEEYIEKLTKAIGYESEKLIPESGFCPYLKDEKRLPASHKLNEERRLWETLNNAR
    YSDPIVDIVTGEITGYYEKQFTKEQKQKLFDYLLTGSELTPAQTKKLLGLKNTNFEDIILQGRD
    KKAQKIKGYKLIKLESMPFWARLSEAQQDSFLYDWNSCPDEKLLTEKLSNEYHLTEEEIDNAFN
    EIVLSSSYAPLGKSAMLIILEKIKNDLSYTEAVEEALKEGKLTKEKQAIKDRLPYYGAVLQEST
    QKIIAKGFSPQFKDKGYKTPHTNKYELEYGRIANPVVHQTLNELRKLVNEIIDILGKKPCEIGL
    ETARELKKSAEDRSKLSREQNDNESNRNRIYEIYIRPQQQVIITRRENPRNYILKFELLEEQKS
    QCPFCGGQISPNDIINNQADIEHLFPIAESEDNGRNNLVISHSACNADKAKRSPWAAFASAAKD
    SKYDYNRILSNVKENIPHKAWRFNQGAFEKFIENKPMAARFKTDNSYISKVAHKYLACLFEKPN
    IICVKGSLTAQLRMAWGLQGLMIPFAKQLITEKESESFNKDVNSNKKIRLDNRHHALDAIVIAY
    ASRGYGNLLNKMAGKDYKINYSERNWLSKILLPPNNIVWENIDADLESFESSVKTALKNAFISV
    KHDHSDNGELVKGTMYKIFYSERGYTLTTYKKLSALKLTDPQKKKTPKDFLETALLKFKGRESE
    MKNEKIKSAIENNKRLFDVIQDNLEKAKKLLEEENEKSKAEGKKEKNINDASIYQKAISLSGDK
    YVQLSKKEPGKFFAISKPTPTTTGYGYDTGDSLCVDLYYDNKGKLCGEIIRKIDAQQKNPLKYK
    EQGFTLFERIYGGDILEVDFDIHSDKNSFRNNTGSAPENRVFIKVGTFTEITNNNIQIWFGNII
    KSTGGQDDSFTINSMQQYNPRKLILSSCGFIKYRSPILKNKEG
    SEQ ID NO: 361
    MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL
    ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS
    AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI
    RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG
    HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA
    RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLNLSPELQDEIGT
    AFSLFKTDEDITGRLKDRIQPEILEALLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEI
    YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS
    FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG
    RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE
    TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN
    LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ
    KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR
    APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK
    DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY
    LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH
    RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR
    SEQ ID NO: 362
    MQTTNLSYILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRLARS
    TRRLIRRRAHRLLLAKRFLKREGILSTIDLEKGLPNQAWELRVAGLERRLSAIEWGAVLLHLIK
    HRGYLSKRKNESQTNNKELGALLSGVAQNHQLLQSDDYRTPAELALKKFAKEEGHIRNQRGAYT
    HTFNRLDLLAELNLLFAQQHQFGNPHCKEHIQQYMTELLMWQKPALSGEAILKMLGKCTHEKNE
    FKAAKHTYSAERFVWLTKLNNLRILEDGAERALNEEERQLLINHPYEKSKLTYAQVRKLLGLSE
    QAIFKHLRYSKENAESATFMELKAWHAIRKALENQGLKDTWQDLAKKPDLLDEIGTAFSLYKTD
    EDIQQYLTNKVPNSVINALLVSLNFDKFIELSLKSLRKILPLMEQGKRYDQACREIYGHHYGEA
    NQKTSQLLPAIPAQEIRNPVVLRTLSQARKVINAIIRQYGSPARVHIETGRELGKSFKERREIQ
    KQQEDNRTKRESAVQKFKELFSDFSSEPKSKDILKFRLYEQQHGKCLYSGKEINIHRLNEKGYV
    EIDHALPFSRTWDDSFNNKVLVLASENQNKGNQTPYEWLQGKINSERWKNFVALVLGSQCSAAK
    KQRLLTQVIDDNKFIDRNLNDTRYIARFLSNYIQENLLLVGKNKKNVFTPNGQITALLRSRWGL
    IKARENNNRHHALDAIVVACATPSMQQKITRFIRFKEVHPYKIENRYEMVDQESGEIISPHFPE
    PWAYFRQEVNIRVFDNHPDTVLKEMLPDRPQANHQFVQPLFVSRAPTRKMSGQGHMETIKSAKR
    LAEGISVLRIPLTQLKPNLLENMVNKEREPALYAGLKARLAEFNQDPAKAFATPFYKQGGQQVK
    AIRVEQVQKSGVLVRENNGVADNASIVRTDVFIKNNKFFLVPIYTWQVAKGILPNKAIVAHKNE
    DEWEEMDEGAKFKFSLFPNDLVELKTKKEYFFGYYIGLDRATGNISLKEHDGEISKGKDGVYRV
    GVKLALSFEKYQVDELGKNRQICRPQQRQPVR
    SEQ ID NO: 363
    MGIRFAFDLGTNSIGWAVWRTGPGVFGEDTAASLDGSGVLIFKDGRNPKDGQSLATMRRVPRQS
    RKRRDRFVLRRRDLLAALRKAGLFPVDVEEGRRLAATDPYHLRAKALDESLTPHEMGRVIFHLN
    QRRGFRSNRKADRQDREKGKIAEGSKRLAETLAATNCRTLGEFLWSRHRGTPRTRSPTRIRMEG
    EGAKALYAFYPTREMVRAEFERLWTAQSRFAPDLLTPERHEEIAGILFRQRDLAPPKIGCCTFE
    PSERRLPRALPSVEARGIYERLAHLRITTGPVSDRGLTRPERDVLASALLAGKSLTFKAVRKTL
    KILPHALVNFEEAGEKGLDGALTAKLLSKPDHYGAAWHGLSFAEKDTFVGKLLDEADEERLIRR
    LVTENRLSEDAARRCASIPLADGYGRLGRTANTEILAALVEETDETGTVVTYAEAVRRAGERTG
    RNWHHSDERDGVILDRLPYYGEILQRHVVPGSGEPEEKNEAARWGRLANPTVHIGLNQLRKVVN
    RLIAAHGRPDQIVVELARELKLNREQKERLDRENRKNREENERRTAILAEHGQRDTAENKIRLR
    LFEEQARANAGIALCPYTGRAIGIAELFTSEVEIDHILPVSLTLDDSLANRVLCRREANREKRR
    QTPFQAFGATPAWNDIVARAAKLPPNKRWRFDPAALERFEREGGFLGRQLNETKYLSRLAKIYL
    GKICDPDRVYVTPGTLTGLLRARWGLNSILSDSNFKNRSDHRHHAVDAVVIGVLTRGMIQRIAH
    DAARAEDQDLDRVFRDVPVPFEDFRDHVRERVSTITVAVKPEHGKGGALHEDTSYGLVPDTDPN
    AALGNLVVRKPIRSLTAGEVDRVRDRALRARLGALAAPFRDESGRVRDAKGLAQALEAFGAENG
    IRRVRILKPDASVVTIADRRTGVPYRAVAPGENHHVDIVQMRDGSWRGFAASVFEVNRPGWRPE
    WEVKKLGGKLVMRLHKGDMVELSDKDGQRRVKVVQQIEISANRVRLSPHNDGGKLQDRHADADD
    PFRWDLATIPLLKDRGCVAVRVDPIGWTLRRSNV
    SEQ ID NO: 364
    MMEVFMGRLVLGLDIGITSVGFGIIDLDESEIVDYGVRLFKEGTAAENETRRTKRGGRRLKRRR
    VTRREDMLHLLKQAGIISTSFHPLNNPYDVRVKGLNERLNGEELATALLHLCKHRGSSVETIED
    DEAKAKEAGETKKVLSMNDQLLKSGKYVCEIQKERLRTNGHIRGHENNFKTRAYVDEAFQILSH
    QDLSNELKSAIITIISRKRMYYDGPGGPLSPTPYGRYTYFGQKEPIDLIEKMRGKCSLFPNEPR
    APKLAYSAELFNLLNDLNNLSIEGEKLTSEQKAMILKIVHEKGKITPKQLAKEVGVSLEQIRGF
    RIDTKGSPLLSELTGYKMIREVLEKSNDEHLEDHVFYDEIAEILTKTKDIEGRKKQISELSSDL
    NEESVHQLAGLTKFTAYHSLSFKALRLINEEMLKTELNQMQSITLFGLKQNNELSVKGMKNIQA
    DDTAILSPVAKRAQRETFKVVNRLREIYGEEDSIVVEMAREKNSEEQRKAIRERQKFFEMRNKQ
    VADIIGDDRKINAKLREKLVLYQEQDGKTAYSLEPIDLKLLIDDPNAYEVDHIIPISISLDDSI
    TNKVLVTHRENQEKGNLTPISAFVKGRFTKGSLAQYKAYCLKLKEKNIKTNKGYRKKVEQYLLN
    ENDIYKYDIQKEFINRNLVDTSYASRVVLNTLTTYFKQNEIPTKVFTVKGSLTNAFRRKINLKK
    DRDEDYGHHAIDALIIASMPKMRLLSTIFSRYKIEDIYDESTGEVFSSGDDSMYYDDRYFAFIA
    SLKAIKVRKFSHKIDTKPNRSVADETIYSTRVIDGKEKVVKKYKDIYDPKFTALAEDILNNAYQ
    EKYLMALHDPQTFDQIVKVVNYYFEEMSKSEKYFTKDKKGRIKISGMNPLSLYRDEHGMLKKYS
    KKGDGPAITQMKYFDGVLGNHIDISAHYQVRDKKVVLQQISPYRTDFYYSKENGYKFVTIRYKD
    VRWSEKKKKYVIDQQDYAMKKAEKKIDDTYEFQFSMHRDELIGITKAEGEALIYPDETWHNFNF
    FFHAGETPEILKFTATNNDKSNKIEVKPIHCYCKMRLMPTISKKIVRIDKYATDVVGNLYKVKK
    NTLKFEFD
    SEQ ID NO: 365
    MKKILGVDLGITSFGYAILQETGKDLYRCLDNSVVMRNNPYDEKSGESSQSIRSTQKSMRRLIE
    KRKKRIRCVAQTMERYGILDYSETMKINDPKNNPIKNRWQLRAVDAWKRPLSPQELFAIFAHMA
    KHRGYKSIATEDLIYELELELGLNDPEKESEKKADERRQVYNALRHLEELRKKYGGETIAQTIH
    RAVEAGDLRSYRNHDDYEKMIRREDIEEEIEKVLLRQAELGALGLPEEQVSELIDELKACITDQ
    EMPTIDESLFGKCTFYKDELAAPAYSYLYDLYRLYKKLADLNIDGYEVTQEDREKVIEWVEKKI
    AQGKNLKKITHKDLRKILGLAPEQKIFGVEDERIVKGKKEPRTFVPFFFLADIAKFKELFASIQ
    KHPDALQIFRELAEILQRSKTPQEALDRLRALMAGKGIDTDDRELLELFKNKRSGTRELSHRYI
    LEALPLFLEGYDEKEVQRILGFDDREDYSRYPKSLRHLHLREGNLFEKEENPINNHAVKSLASW
    ALGLIADLSWRYGPFDEIILETTRDALPEKIRKEIDKAMREREKALDKIIGKYKKEFPSIDKRL
    ARKIQLWERQKGLDLYSGKVINLSQLLDGSADIEHIVPQSLGGLSTDYNTIVTLKSVNAAKGNR
    LPGDWLAGNPDYRERIGMLSEKGLIDWKKRKNLLAQSLDEIYTENTHSKGIRATSYLEALVAQV
    LKRYYPFPDPELRKNGIGVRMIPGKVTSKTRSLLGIKSKSRETNFHHAEDALILSTLTRGWQNR
    LHRMLRDNYGKSEAELKELWKKYMPHIEGLTLADYIDEAFRRFMSKGEESLFYRDMFDTIRSIS
    YWVDKKPLSASSHKETVYSSRHEVPTLRKNILEAFDSLNVIKDRHKLTTEEFMKRYDKEIRQKL
    WLHRIGNTNDESYRAVEERATQIAQILTRYQLMDAQNDKEIDEKFQQALKELITSPIEVTGKLL
    RKMRFVYDKLNAMQIDRGLVETDKNMLGIHISKGPNEKLIFRRMDVNNAHELQKERSGILCYLN
    EMLFIFNKKGLIHYGCLRSYLEKGQGSKYIALFNPRFPANPKAQPSKFTSDSKIKQVGIGSATG
    IIKAHLDLDGHVRSYEVFGTLPEGSIEWFKEESGYGRVEDDPHH
    SEQ ID NO: 366
    MRPIEPWILGLDIGTDSLGWAVFSCEEKGPPTAKELLGGGVRLFDSGRDAKDHTSRQAERGAFR
    RARRQTRTWPWRRDRLIALFQAAGLTPPAAETRQIALALRREAVSRPLAPDALWAALLHLAHHR
    GFRSNRIDKRERAAAKALAKAKPAKATAKATAPAKEADDEAGEWEGAEAALRQRMAASGAPTVG
    ALLADDLDRGQPVRMRYNQSDRDGVVAPTRALIAEELAEIVARQSSAYPGLDWPAVTRLVLDQR
    PLRSKGAGPCAFLPGEDRALRALPTVQDFIIRQTLANLRLPSTSADEPRPLTDEEHAKALALLS
    TARFVEWPALRRALGLKRGVKFTAETERNGAKQAARGTAGNLTEAILAPLIPGWSGWDLDRKDR
    VFSDLWAARQDRSALLALIGDPRGPTRVTEDETAEAVADAIQIVLPTGRASLSAKAARAIAQAM
    APGIGYDEAVTLALGLHHSHRPRQERLARLPYYAAALPDVGLDGDPVGPPPAEDDGAAAEAYYG
    RIGNISVHIALNETRKIVNALLHRHGPILRLVMVETTRELKAGADERKRMIAEQAERERENAEI
    DVELRKSDRWMANARERRQRVRLARRQNNLCPYTSTPIGHADLLGDAYDIDHVIPLARGGRDSL
    DNMVLCQSDANKTKGDKTPWEAFHDKPGWIAQRDDFLARLDPQTAKALAWRFADDAGERVARKS
    AEDEDQGFLPRQLTDTGYIARVALRYLSLVTNEPNAVVATNGRLTGLLRLAWDITPGPAPRDLL
    PTPRDALRDDTAARRFLDGLTPPPLAKAVEGAVQARLAALGRSRVADAGLADALGLTLASLGGG
    GKNRADHRHHFIDAAMIAVTTRGLINQINQASGAGRILDLRKWPRTNFEPPYPTFRAEVMKQWD
    HIHPSIRPAHRDGGSLHAATVFGVRNRPDARVLVQRKPVEKLFLDANAKPLPADKIAEIIDGFA
    SPRMAKRFKALLARYQAAHPEVPPALAALAVARDPAFGPRGMTANTVIAGRSDGDGEDAGLITP
    FRANPKAAVRTMGNAVYEVWEIQVKGRPRWTHRVLTRFDRTQPAPPPPPENARLVMRLRRGDLV
    YWPLESGDRLFLVKKMAVDGRLALWPARLATGKATALYAQLSCPNINLNGDQGYCVQSAEGIRK
    EKIRTTSCTALGRLRLSKKAT
    SEQ ID NO: 367
    MKYTLGLDVGIASVGWAVIDKDNNKIIDLGVRCFDKAEESKTGESLATARRIARGMRRRISRRS
    QRLRLVKKLFVQYEIIKDSSEFNRIFDTSRDGWKDPWELRYNALSRILKPYELVQVLTHITKRR
    GFKSNRKEDLSTTKEGVVITSIKNNSEMLRTKNYRTIGEMIFMETPENSNKRNKVDEYIHTIAR
    EDLLNEIKYIFSIQRKLGSPFVTEKLEHDFLNIWEFQRPFASGDSILSKVGKCTLLKEELRAPT
    SCYTSEYFGLLQSINNLVLVEDNNTLTLNNDQRAKIIEYAHFKNEIKYSEIRKLLDIEPEILFK
    AHNLTHKNPSGNNESKKFYEMKSYHKLKSTLPTDIWGKLHSNKESLDNLFYCLTVYKNDNEIKD
    YLQANNLDYLIEYIAKLPTFNKFKHLSLVAMKRIIPFMEKGYKYSDACNMAELDFTGSSKLEKC
    NKLTVEPIIENVTNPVVIRALTQARKVINAIIQKYGLPYMVNIELAREAGMTRQDRDNLKKEHE
    NNRKAREKISDLIRQNGRVASGLDILKWRLWEDQGGRCAYSGKPIPVCDLLNDSLTQIDHIYPY
    SRSMDDSYMNKVLVLTDENQNKRSYTPYEVWGSTEKWEDFEARIYSMHLPQSKEKRLLNRNFIT
    KDLDSFISRNLNDTRYISRFLKNYIESYLQFSNDSPKSCVVCVNGQCTAQLRSRWGLNKNREES
    DLHHALDAAVIACADRKIIKEITNYYNERENHNYKVKYPLPWHSFRQDLMETLAGVFISRAPRR
    KITGPAHDETIRSPKHFNKGLTSVKIPLTTVTLEKLETMVKNTKGGISDKAVYNVLKNRLIEHN
    NKPLKAFAEKIYKPLKNGTNGAIIRSIRVETPSYTGVFRNEGKGISDNSLMVRVDVFKKKDKYY
    LVPIYVAHMIKKELPSKAIVPLKPESQWELIDSTHEFLFSLYQNDYLVIKTKKGITEGYYRSCH
    RGTGSLSLMPHFANNKNVKIDIGVRTAISIEKYNVDILGNKSIVKGEPRRGMEKYNSFKSN
    SEQ ID NO: 368
    MIRTLGIDIGIASIGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNKESLALPRTLARSAR
    RRNARKKGRIQQVKHYLSKALGLDLECFVQGEKLATLFQTSKDFLSPWELRERALYRVLDKEEL
    ARVILHIAKRRGYDDITYGVEDNDSGKIKKAIAENSKRIKEEQCKTIGEMMYKLYFQKSLNVRN
    KKESYNRCVGRSELREELKTIFQIQQELKSPWVNEELIYKLLGNPDAQSKQEREGLIFYQRPLK
    GFGDKIGKCSHIKKGENSPYRACKHAPSAEEFVALTKSINFLKNLTNRHGLCFSQEDMCVYLGK
    ILQEAQKNEKGLTYSKLKLLLDLPSDFEFLGLDYSGKNPEKAVFLSLPSTFKLNKITQDRKTQD
    KIANILGANKDWEAILKELESLQLSKEQIQTIKDAKLNFSKHINLSLEALYHLLPLMREGKRYD
    EGVEILQERGIFSKPQPKNRQLLPPLSELAKEESYFDIPNPVLRRALSEFRKVVNALLEKYGGF
    HYFHIELTRDVCKAKSARMQLEKINKKNKSENDAASQLLEVLGLPNTYNNRLKCKLWKQQEEYC
    LYSGEKITIDHLKDQRALQIDHAFPLSRSLDDSQSNKVLCLTSSNQEKSNKTPYEWLGSDEKKW
    DMYVGRVYSSNFSPSKKRKLTQKNFKERNEEDFLARNLVDTGYIGRVTKEYIKHSLSFLPLPDG
    KKEHIRIISGSMTSTMRSFWGVQEKNRDHHLHHAQDAIIIACIEPSMIQKYTTYLKDKETHRLK
    SHQKAQILREGDHKLSLRWPMSNFKDKIQESIQNIIPSHHVSHKVTGELHQETVRTKEFYYQAF
    GGEEGVKKALKFGKIREINQGIVDNGAMVRVDIFKSKDKGKFYAVPIYTYDFAIGKLPNKAIVQ
    GKKNGIIKDWLEMDENYEFCFSLFKNDCIKIQTKEMQEAVLAIYKSTNSAKATIELEHLSKYAL
    KNEDEEKMFTDTDKEKNKTMTRESCGIQGLKVFQKVKLSVLGEVLEHKPRNRQNIALKTTPKHV
    SEQ ID NO: 369
    MKYSIGLDIGIASVGWSVINKDKERIEDMGVRIFQKAENPKDGSSLASSRREKRGSRRRNRRKK
    HRLDRIKNILCESGLVKKNEIEKIYKNAYLKSPWELRAKSLEAKISNKEIAQILLHIAKRRGFK
    SFRKTDRNADDTGKLLSGIQENKKIMEEKGYLTIGDMVAKDPKFNTHVRNKAGSYLFSFSRKLL
    EDEVRKIQAKQKELGNTHFTDDVLEKYIEVFNSQRNFDEGPSKPSPYYSEIGQIAKMIGNCTFE
    SSEKRTAKNTWSGERFVFLQKLNNFRIVGLSGKRPLTEEERDIVEKEVYLKKEVRYEKLRKILY
    LKEEERFGDLNYSKDEKQDKKTEKTKFISLIGNYTIKKLNLSEKLKSEIEEDKSKLDKIIEILT
    FNKSDKTIESNLKKLELSREDIEILLSEEFSGTLNLSLKAIKKILPYLEKGLSYNEACEKADYD
    YKNNGIKFKRGELLPVVDKDLIANPVVLRAISQTRKVVNAIIRKYGTPHTIHVEVARDLAKSYD
    DRQTIIKENKKRELENEKTKKFISEEFGIKNVKGKLLLKYRLYQEQEGRCAYSRKELSLSEVIL
    DESMTDIDHIIPYSRSMDDSYSNKVLVLSGENRKKSNLLPKEYFDRQGRDWDTFVLNVKAMKIH
    PRKKSNLLKEKFTREDNKDWKSRALNDTRYISRFVANYLENALEYRDDSPKKRVFMIPGQLTAQ
    LRARWRLNKVRENGDLHHALDAAVVAVTDQKAINNISNISRYKELKNCKDVIPSIEYHADEETG
    EVYFEEVKDTRFPMPWSGFDLELQKRLESENPREEFYNLLSDKRYLGWFNYEEGFIEKLRPVFV
    SRMPNRGVKGQAHQETIRSSKKISNQIAVSKKPLNSIKLKDLEKMQGRDTDRKLYEALKNRLEE
    YDDKPEKAFAEPFYKPTNSGKRGPLVRGIKVEEKQNVGVYVNGGQASNGSMVRIDVFRKNGKFY
    TVPIYVHQTLLKELPNRAINGKPYKDWDLIDGSFEFLYSFYPNDLIEIEFGKSKSIKNDNKLTK
    TEIPEVNLSEVLGYYRGMDTSTGAATIDTQDGKIQMRIGIKTVKNIKKYQVDVLGNVYKVKREK
    RQTF
    SEQ ID NO: 370
    MSKKVSRRYEEQAQEICQRLGSRPYSIGLDLGVGSIGVAVAAYDPIKKQPSDLVFVSSRIFIPS
    TGAAERRQKRGQRNSLRHRANRLKFLWKLLAERNLMLSYSEQDVPDPARLRFEDAVVRANPYEL
    RLKGLNEQLTLSELGYALYHIANHRGSSSVRTFLDEEKSSDDKKLEEQQAMTEQLAKEKGISTF
    IEVLTAFNTNGLIGYRNSESVKSKGVPVPTRDIISNEIDVLLQTQKQFYQEILSDEYCDRIVSA
    ILFENEKIVPEAGCCPYFPDEKKLPRCHFLNEERRLWEAINNARIKMPMQEGAAKRYQSASFSD
    EQRHILFHIARSGTDITPKLVQKEFPALKTSIIVLQGKEKAIQKIAGFRFRRLEEKSFWKRLSE
    EQKDDFFSAWTNTPDDKRLSKYLMKHLLLTENEVVDALKTVSLIGDYGPIGKTATQLLMKHLED
    GLTYTEALERGMETGEFQELSVWEQQSLLPYYGQILTGSTQALMGKYWHSAFKEKRDSEGFFKP
    NTNSDEEKYGRIANPVVHQTLNELRKLMNELITILGAKPQEITVELARELKVGAEKREDIIKQQ
    TKQEKEAVLAYSKYCEPNNLDKRYIERFRLLEDQAFVCPYCLEHISVADIAAGRADVDHIFPRD
    DTADNSYGNKVVAHRQCNDIKGKRTPYAAFSNTSAWGPIMHYLDETPGMWRKRRKFETNEEEYA
    KYLQSKGFVSRFESDNSYIAKAAKEYLRCLFNPNNVTAVGSLKGMETSILRKAWNLQGIDDLLG
    SRHWSKDADTSPTMRKNRDDNRHHGLDAIVALYCSRSLVQMINTMSEQGKRAVEIEAMIPIPGY
    ASEPNLSFEAQRELFRKKILEFMDLHAFVSMKTDNDANGALLKDTVYSILGADTQGEDLVFVVK
    KKIKDIGVKIGDYEEVASAIRGRITDKQPKWYPMEMKDKIEQLQSKNEAALQKYKESLVQAAAV
    LEESNRKLIESGKKPIQLSEKTISKKALELVGGYYYLISNNKRTKTFVVKEPSNEVKGFAFDTG
    SNLCLDFYHDAQGKLCGEIIRKIQAMNPSYKPAYMKQGYSLYVRLYQGDVCELRASDLTEAESN
    LAKTTHVRLPNAKPGRTFVIIITFTEMGSGYQIYFSNLAKSKKGQDTSFTLTTIKNYDVRKVQL
    SSAGLVRYVSPLLVDKIEKDEVALCGE
    SEQ ID NO: 371
    MNQKFILGLDIGITSVGYGLIDYETKNIIDAGVRLFPEANVENNEGRRSKRGSRRLKRRRIHRL
    ERVKKLLEDYNLLDQSQIPQSTNPYAIRVKGLSEALSKDELVIALLHIAKRRGIHKIDVIDSND
    DVGNELSTKEQLNKNSKLLKDKFVCQIQLERMNEGQVRGEKNRFKTADIIKEIIQLLNVQKNFH
    QLDENFINKYIELVEMRREYFEGPGKGSPYGWEGDPKAWYETLMGHCTYFPDELRSVKYAYSAD
    LFNALNDLNNLVIQRDGLSKLEYHEKYHIIENVFKQKKKPTLKQIANEINVNPEDIKGYRITKS
    GKPQFTEFKLYHDLKSVLFDQSILENEDVLDQIAEILTIYQDKDSIKSKLTELDILLNEEDKEN
    IAQLTGYTGTHRLSLKCIRLVLEEQWYSSRNQMEIFTHLNIKPKKINLTAANKIPKAMIDEFIL
    SPVVKRTFGQAINLINKIIEKYGVPEDIIIELARENNSKDKQKFINEMQKKNENTRKRINEIIG
    KYGNQNAKRLVEKIRLHDEQEGKCLYSLESIPLEDLLNNPNHYEVDHIIPRSVSFDNSYHNKVL
    VKQSENSKKSNLTPYQYFNSGKSKLSYNQFKQHILNLSKSQDRISKKKKEYLLEERDINKFEVQ
    KEFINRNLVDTRYATRELTNYLKAYFSANNMNVKVKTINGSFTDYLRKVWKFKKERNHGYKHHA
    EDALIIANADFLFKENKKLKAVNSVLEKPEIESKQLDIQVDSEDNYSEMFIIPKQVQDIKDFRN
    FKYSHRVDKKPNRQLINDTLYSTRKKDNSTYIVQTIKDIYAKDNTTLKKQFDKSPEKFLMYQHD
    PRTFEKLEVIMKQYANEKNPLAKYHEETGEYLTKYSKKNNGPIVKSLKYIGNKLGSHLDVTHQF
    KSSTKKLVKLSIKPYRFDVYLTDKGYKFITISYLDVLKKDNYYYIPEQKYDKLKLGKAIDKNAK
    FIASFYKNDLIKLDGEIYKIIGVNSDTRNMIELDLPDIRYKEYCELNNIKGEPRIKKTIGKKVN
    SIEKLTTDVLGNVFTNTQYTKPQLLFKRGN
    SEQ ID NO: 372
    MIMKLEKWRLGLDLGTNSIGWSVFSLDKDNSVQDLIDMGVRIFSDGRDPKTKEPLAVARRTARS
    QRKLIYRRKLRRKQVFKFLQEQGLFPKTKEECMTLKSLNPYELRIKALDEKLEPYELGRALFNL
    AVRRGFKSNRKDGSREEVSEKKSPDEIKTQADMQTHLEKAIKENGCRTITEFLYKNQGENGGIR
    FAPGRMTYYPTRKMYEEEFNLIRSKQEKYYPQVDWDDIYKAIFYQRPLKPQQRGYCIYENDKER
    TFKAMPCSQKLRILQDIGNLAYYEGGSKKRVELNDNQDKVLYELLNSKDKVTFDQMRKALCLAD
    SNSFNLEENRDFLIGNPTAVKMRSKNRFGKLWDEIPLEEQDLIIETIITADEDDAVYEVIKKYD
    LTQEQRDFIVKNTILQSGTSMLCKEVSEKLVKRLEEIADLKYHEAVESLGYKFADQTVEKYDLL
    PYYGKVLPGSTMEIDLSAPETNPEKHYGKISNPTVHVALNQTRVVVNALIKEYGKPSQIAIELS
    RDLKNNVEKKAEIARKQNQRAKENIAINDTISALYHTAFPGKSFYPNRNDRMKYRLWSELGLGN
    KCIYCGKGISGAELFTKEIEIEHILPFSRTLLDAESNLTVAHSSCNAFKAERSPFEAFGTNPSG
    YSWQEIIQRANQLKNTSKKNKFSPNAMDSFEKDSSFIARQLSDNQYIAKAALRYLKCLVENPSD
    VWTTNGSMTKLLRDKWEMDSILCRKFTEKEVALLGLKPEQIGNYKKNRFDHRHHAIDAVVIGLT
    DRSMVQKLATKNSHKGNRIEIPEFPILRSDLIEKVKNIVVSFKPDHGAEGKLSKETLLGKIKLH
    GKETFVCRENIVSLSEKNLDDIVDEIKSKVKDYVAKHKGQKIEAVLSDFSKENGIKKVRCVNRV
    QTPIEITSGKISRYLSPEDYFAAVIWEIPGEKKTFKAQYIRRNEVEKNSKGLNVVKPAVLENGK
    PHPAAKQVCLLHKDDYLEFSDKGKMYFCRIAGYAATNNKLDIRPVYAVSYCADWINSTNETMLT
    GYWKPTPTQNWVSVNVLFDKQKARLVTVSPIGRVFRK
    SEQ ID NO: 373
    MSSKAIDSLEQLDLFKPQEYTLGLDLGIKSIGWAILSGERIANAGVYLFETAEELNSTGNKLIS
    KAAERGRKRRIRRMLDRKARRGRHIRYLLEREGLPTDELEEVVVHQSNRTLWDVRAEAVERKLT
    KQELAAVLFHLVRHRGYFPNTKKLPPDDESDSADEEQGKINRATSRLREELKASDCKTIGQFLA
    QNRDRQRNREGDYSNLMARKLVFEEALQILAFQRKQGHELSKDFEKTYLDVLMGQRSGRSPKLG
    NCSLIPSELRAPSSAPSTEWFKFLQNLGNLQISNAYREEWSIDAPRRAQIIDACSQRSTSSYWQ
    IRRDFQIPDEYRFNLVNYERRDPDVDLQEYLQQQERKTLANFRNWKQLEKIIGTGHPIQTLDEA
    ARLITLIKDDEKLSDQLADLLPEASDKAITQLCELDFTTAAKISLEAMYRILPHMNOGMGFFDA
    CQQESLPEIGVPPAGDRVPPFDEMYNPVVNRVLSQSRKLINAVIDEYGMPAKIRVELARDLGKG
    RELRERIKLDQLDKSKONDQRAEDFRAEFQQAPRGDQSLRYRLWKEQNCTCPYSGRMIPVNSVL
    SEDTQIDHILPISQSFDNSLSNKVLCFTEENAQKSNRTPFEYLDAADFQRLEAISGNWPEAKRN
    KLLHKSFGKVAEEWKSRALNDTRYLTSALADHLRHHLPDSKIQTVNGRITGYLRKQWGLEKDRD
    KHTHHAVDAIVVACTTPAIVQQVTLYHQDIRRYKKLGEKRPTPWPETFRQDVLDVEEEIFITRQ
    PKKVSGGIQTKDTLRKHRSKPDRQRVALTKVKLADLERLVEKDASNRNLYEHLKQCLEESGDQP
    TKAFKAPFYMPSGPEAKQRPILSKVTLLREKPEPPKQLTELSGGRRYDSMAQGRLDIYRYKPGG
    KRKDEYRVVLQRMIDLMRGEENVHVFQKGVPYDQGPEIEQNYTFLFSLYFDDLVEFQRSADSEV
    IRGYYRTFNIANGQLKISTYLEGRQDFDFFGANRLAHFAKVQVNLLGKVIK
    SEQ ID NO: 374
    MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDGRNPKDGSSLAVTRRAARAMR
    RRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNPYALRAKGLQEALLPGEFARALFHINQ
    RRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMAEQGSRTVGEYLWTRLQQGQGVRARYREKPYTT
    EEGKKRIDKSYDLYIDRAMIEQEFDALWAAQAAFNPTLFHEAARADLKDTLLHQRPLRPVKPGR
    CTLLPEEERAPLALPSTORFRIHQEVNHLRLLDENLREVALTLAQRDAVVTALETKAKLSFEQI
    RKLLKLSGSVQFNLEDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEIVWQLVTEEGEGA
    LIAWLQTHTGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITYDKAVQAAGFDHHSQ
    LGFEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPEDPDEKRYGKIANPTVHI
    GLNQVRMVVNALIRRYGRPTEVVIELARDLKQSREQKVEAQRRQADNQRRNARIRRSIAEVLGI
    GEERVRGSDIQKWICWEELSFDAADRRCPYSGVQISAAMLLSDEVEVEHILPFSKTLDDSLNNR
    TVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPLRKRYRFAPDGYERWLGDDKDFL
    ARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALLRGKFGLNDVLGLDGEKNRNDHRHHAVDA
    CVIGVTDQGLMQRFATASAQARGDGLTRLVDGMPMPWPTYRDHVERAVRHIWVSHRPDHGFEGA
    MMEETSYGIRKDGSIKQRRKADGSAGREISNLIRIHEATQPLRHGVSADGQPLAYKGYVGGSNY
    CIEITVNDKGKWEGEVISTFRAYGVVRAGGMGRLRNPHEGQNGRKLIMRLVIGDSVRLEVDGAE
    RTMRIVKISGSNGQIFMAPIHEANVDARNTDKQDAFTYTSKYAGSLQKAKTRRVTISPIGEVRD
    PGFKG
    SEQ ID NO: 375
    MARPAFRAPRREHVNGWTPDPHRISKPFFILVSWHLLSRVVIDSSSGCFPGTSRDHTDKFAEWE
    CAVQPYRLSFDLGTNSIGWGLLNLDRQGKPREIRALGSRIFSDGRDPQDKASLAVARRLARQMR
    RRRDRYLTRRTRLMGALVRFGLMPADPAARKRLEVAVDPYLARERATRERLEPFEIGRALFHLN
    QRRGYKPVRTATKPDEEAGKVKEAVERLEAAIAAAGAPTLGAWFAWRKTRGETLRARLAGKGKE
    AAYPFYPARRMLEAEFDTLWAEQARHHPDLLTAEAREILRHRIFHQRPLKPPPVGRCTLYPDDG
    RAPRALPSAQRLRLFQELASLRVIHLDLSERPLTPAERDRIVAFVQGRPPKAGRKPGKVQKSVP
    FEKLRGLLELPPGTGFSLESDKRPELLGDETGARIAPAFGPGWTALPLEEQDALVELLLTEAEP
    ERAIAALTARWALDEATAAKLAGATLPDFHGRYGRRAVAELLPVLERETRGDPDGRVRPIRLDE
    AVKLLRGGKDHSDFSREGALLDALPYYGAVLERHVAFGTGNPADPEEKRVGRVANPTVHIALNQ
    LRHLVNAILARHGRPEEIVIELARDLKRSAEDRRREDKRQADNQKRNEERKRLILSLGERPTPR
    NLLKLRLWEEQGPVENRRCPYSGETISMRMLLSEQVDIDHILPFSVSLDDSAANKVVCLREANR
    IKRNRSPWEAFGHDSERWAGILARAEALPKNKRWRFAPDALEKLEGEGGLRARHLNDTRHLSRL
    AVEYLRCVCPKVRVSPGRLTALLRRRWGIDAILAEADGPPPEVPAETLDPSPAEKNRADHRHHA
    LDAVVIGCIDRSMVQRVQLAAASAEREAAAREDNIRRVLEGFKEEPWDGFRAELERRARTIVVS
    HRPEHGIGGALHKETAYGPVDPPEEGFNLVVRKPIDGLSKDEINSVRDPRLRRALIDRLAIRRR
    DANDPATALAKAAEDLAAQPASRGIRRVRVLKKESNPIRVEHGGNPSGPRSGGPFHKLLLAGEV
    HHVDVALRADGRRWVGHWVTLFEAHGGRGADGAAAPPRLGDGERFLMRLHKGDCLKLEHKGRVR
    VMQVVKLEPSSNSVVVVEPHQVKTDRSKHVKISCDQLRARGARRVTVDPLGRVRVHAPGARVGI
    GGDAGRTAMEPAEDIS
    SEQ ID NO: 376
    MKRTSLRAYRLGVDLGANSLGWFVVWLDDHGQPEGLGPGGVRIFPDGRNPQSKQSNAAGRRLAR
    SARRRRDRYLQRRGKLMGLLVKHGLMPADEPARKRLECLDPYGLRAKALDEVLPLHHVGRALFH
    LNQRRGLFANRAIEQGDKDASAIKAAAGRLQTSMQACGARTLGEFLNRRHQLRATVRARSPVGG
    DVQARYEFYPTRAMVDAEFEAIWAAQAPHHPTMTAEAHDTIREAIFSQRAMKRPSIGKCSLDPA
    TSQDDVDGFRCAWSHPLAQRFRIWQDVRNLAVVETGPTSSRLGKEDQDKVARALLQTDQLSFDE
    IRGLLGLPSDARFNLESDRRDHLKGDATGAILSARRHFGPAWHDRSLDRQIDIVALLESALDEA
    AIIASLGTTHSLDEAAAQRALSALLPDGYCRLGLRAIKRVLPLMEAGRTYAEAASAAGYDHALL
    PGGKLSPTGYLPYYGQWLQNDVVGSDDERDTNERRWGRLPNPTVHIGIGQLRRVVNELIRWHGP
    PAEITVELTRDLKLSPRRLAELEREQAENQRKNDKRTSLLRKLGLPASTHNLLKLRLWDEQGDV
    ASECPYTGEAIGLERLVSDDVDIDHLIPFSISWDDSAANKVVCMRYANREKGNRTPFEAFGHRQ
    GRPYDWADIAERAARLPRGKRWRFGPGARAQFEELGDFQARLLNETSWLARVAKQYLAAVTHPH
    RIHVLPGRLTALLRATWELNDLLPGSDDRAAKSRKDHRHHAIDALVAALTDQALLRRMANAHDD
    TRRKIEVLLPWPTFRIDLETRLKAMLVSHKPDHGLQARLHEDTAYGTVEHPETEDGANLVYRKT
    FVDISEKEIDRIRDRRLRDLVRAHVAGERQQGKTLKAAVLSFAQRRDIAGHPNGIRHVRLTKSI
    KPDYLVPIRDKAGRIYKSYNAGENAFVDILQAESGRWIARATTVFQANQANESHDAPAAQPIMR
    VFKGDMLRIDHAGAEKFVKIVRLSPSNNLLYLVEHHQAGVFQTRHDDPEDSFRWLFASFDKLRE
    WNAELVRIDTLGQPWRRKRGLETGSEDATRIGWTRPKKWP
    SEQ ID NO: 377
    MERIFGFDIGTTSIGFSVIDYSSTQSAGNIQRLGVRIFPEARDPDGTPLNQQRRQKRMMRRQLR
    RRRIRRKALNETLHEAGFLPAYGSADWPVVMADEPYELRRRGLEEGLSAYEFGRAIYHLAQHRH
    FKGRELEESDTPDPDVDDEKEAANERAATLKALKNEQTTLGAWLARRPPSDRKRGIHAHRNVVA
    EEFERLWEVQSKFHPALKSEEMRARISDTIFAQRPVFWRKNTLGECRFMPGEPLCPKGSWLSQQ
    RRMLEKLNNLAIAGGNARPLDAEERDAILSKLQQQASMSWPGVRSALKALYKQRGEPGAEKSLK
    FNLELGGESKLLGNALEAKLADMFGPDWPAHPRKQEIRHAVHERLWAADYGETPDKKRVIILSE
    KDRKAHREAAANSFVADFGITGEQAAQLQALKLPTGWEPYSIPALNLFLAELEKGERFGALVNG
    PDWEGWRRTNFPHRNQPTGEILDKLPSPASKEERERISQLRNPTVVRTQNELRKVVNNLIGLYG
    KPDRIRIEVGRDVGKSKREREEIQSGIRRNEKQRKKATEDLIKNGIANPSRDDVEKWILWKEGQ
    ERCPYTGDQIGFNALFREGRYEVEHIWPRSRSFDNSPRNKTLCRKDVNIEKGNRMPFEAFGHDE
    DRWSAIQIRLQGMVSAKGGTGMSPGKVKRFLAKTMPEDFAARQLNDTRYAAKQILAQLKRLWPD
    MGPEAPVKVEAVTGQVTAQLRKLWTLNNILADDGEKTRADHRHHAIDALTVACTHPGMTNKLSR
    YWQLRDDPRAEKPALTPPWDTIRADAEKAVSEIVVSHRVRKKVSGPLHKETTYGDTGTDIKTKS
    GTYRQFVTRKKIESLSKGELDEIRDPRIKEIVAAHVAGRGGDPKKAFPPYPCVSPGGPEIRKVR
    LTSKQQLNLMAQTGNGYADLGSNHHIAIYRLPDGKADFEIVSLFDASRRLAQRNPIVQRTRADG
    ASFVMSLAAGEAIMIPEGSKKGIWIVQGVWASGQVVLERDTDADHSTTTRPMPNPILKDDAKKV
    SIDPIGRVRPSND
    SEQ ID NO: 378
    MNKRILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEGVKIEKGIESSKAAERSGYKAIR
    KQYFRRRLRKIQVLKVLVKYHLCPYLSDDDLRQWHLQKQYPKSDELMLWQRTSDEEGKNPYYDR
    HRCLHEKLDLTVEADRYTLGRALYHLTQRRGFLSNRLDTSADNKEDGVVKSGISQLSTEMEEAG
    CEYLGDYFYKLYDAQGNKVRIRQRYTDRNKHYQHEFDAICEKQELSSELIEDLQRAIFFQLPLK
    SQRHGVGRCTFERGKPRCADSHPDYEEFRMLCFVNNIQVKGPHDLELRPLTYEEREKIEPLFFR
    KSKPNFDFEDIAKALAGKKNYAWIHDKEERAYKENYRMTQGVPGCPTIAQLKSIFGDDWKTGIA
    ETYTLIQKKNGSKSLQEMVDDVWNVLYSFSSVEKLKEFAHHKLQLDEESAEKFAKIKLSHSFAA
    LSLKAIRKFLPFLRKGMYYTHASFFANIPTIVGKEIWNKEQNRKYIMENVGELVFNYQPKHREV
    QGTIEMLIKDFLANNFELPAGATDKLYHPSMIETYPNAQRNEFGILQLGSPRTNAIRNPMAMRS
    LHILRRVVNQLLKESIIDENTEVHVEYARELNDANKRRAIADRQKEQDKQHKKYGDEIRKLYKE
    ETGKDIEPTQTDVLKFQLWEEQNHHCLYTGEQIGITDFIGSNPKFDIEHTIPQSVGGDSTQMNL
    TLCDNRFNREVKKAKLPTELANHEEILTRIEPWKNKYEQLVKERDKQRTFAGMDKAVKDIRIQK
    RHKLQMEIDYWRGKYERFTMTEVPEGFSRRQGTGIGLISRYAGLYLKSLFHQADSRNKSNVYVV
    KGVATAEFRKMWGLQSEYEKKCRDNHSHHCMDAITIACIGKREYDLMAEYYRMEETFKQGRGSK
    PKFSKPWATFTEDVLNIYKNLLVVHDTPNNMPKHTKKYVQTSIGKVLAQGDTARGSLHLDTYYG
    AIERDGEIRYVVRRPLSSFTKPEELENIVDETVKRTIKEAIADKNFKQAIAEPIYMNEEKGILI
    KKVRCFAKSVKQPINIRQHRDLSKKEYKQQYHVMNENNYLLAIYEGLVKNKVVREFEIVSYIEA
    AKYYKRSQDRNIFSSIVPTHSTKYGLPLKTKLLMGQLVLMFEENPDEIQVDNTKDLVKRLYKVV
    GIEKDGRIKFKYHQEARKEGLPIFSTPYKNNDDYAPIFRQSINNINILVDGIDFTIDILGKVTL
    KE
    SEQ ID NO: 379
    MNYKMGLDIGIASVGWAVINLDLKRIEDLGVRIFDKAEHPQNGESLALPRRIARSARRRLRRRK
    HRLERIRRLLVSENVLTKEEMNLLFKQKKQIDVWQLRVDALERKLNNDELARVLLHLAKRRGFK
    SNRKSERNSKESSEFLKNIEENQSILAQYRSVGEMIVKDSKFAYHKRNKLDSYSNMIARDDLER
    EIKLIFEKQREFNNPVCTERLEEKYLNIWSSQRPFASKEDIEKKVGFCTFEPKEKRAPKATYTF
    QSFIVWEHINKLRLVSPDETRALTEIERNLLYKQAFSKNKMTYYDIRKLLNLSDDIHFKGLLYD
    PKSSLKQIENIRFLELDSYHKIRKCIENVYGKDGIRMFNETDIDTFGYALTIFKDDEDIVAYLQ
    NEYITKNGKRVSNLANKVYDKSLIDELLNLSFSKFAHLSMKAIRNILPYMEQGEIYSKACELAG
    YNFTGPKKKEKALLLPVIPNIANPVVMRALTQSRKVVNAIIKKYGSPVSIHIELARDLSHSFDE
    RKKIQKDQTENRKKNETAIKQLIEYELTKNPTGLDIVKFKLWSEQQGRCMYSLKPIELERLLEP
    GYVEVDHILPYSRSLDDSYANKVLVLTKENREKGNHTPVEYLGLGSERWKKFEKFVLANKQFSK
    KKKQNLLRLRYEETEEKEFKERNLNDTRYISKFFANFIKEHLKFADGDGGQKVYTINGKITAHL
    RSRWDFNKNREESDLHHAVDAVIVACATQGMIKKITEFYKAREQNKESAKKKEPIFPQPWPHFA
    DELKARLSKFPQESIEAFALGNYDRKKLESLRPVFVSRMPKRSVTGAAHQETLRRCVGIDEQSG
    KIQTAVKTKLSDIKLDKDGHFPMYQKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGEP
    GPVIRTVKIIDTKNKVVHLDGSKTVAYNSNIVRTDVFEKDGKYYCVPVYTMDIMKGTLPNKAIE
    ANKPYSEWKEMTEEYTFQFSLFPNDLVRIVLPREKTIKTSTNEEIIIKDIFAYYKTIDSATGGL
    ELISHDRNFSLRGVGSKTLKRFEKYQVDVLGNIHKVKGEKRVGLAAPTNQKKGKTVDSLQSVSD
    SEQ ID NO: 380
    MRRLGLDLGTNSIGWCLLDLGDDGEPVSIFRTGARIFSDGRDPKSLGSLKATRREARLTRRRRD
    REIQRQKNLINALVKYGLMPADEIQRQALAYKDPYPIRKKALDEAIDPYEMGRAIFHINQRRGF
    KSNRKSADNEAGVVKQSIADLEMKLGEAGARTIGEFLADRQATNDTVRARRLSGTNALYEFYPD
    RYMLEQEFDTLWAKQAAFNPSLYIEAARERLKEIVFFQRKLKPQEVGRCIFLSDEDRISKALPS
    FQRFRIYQELSNLAWIDHDGVAHRITASLALRDHLFDELEHKKKLTFKAMRAILRKQGVVDYPV
    GFNLESDNRDHLIGNLTSCIMRDAKKMIGSAWDRLDEEEQDSFILMLQDDQKGDDEVRSILTQQ
    YGLSDDVAEDCLDVRLPDGHGSLSKKAIDRILPVLRDQGLIYYDAVKEAGLGEANLYDPYAALS
    DKLDYYGKALAGHVMGASGKFEDSDEKRYGTISNPTVHIALNQVRAVVNELIRLHGKPDEVVIE
    IGRDLPMGADGKRELERFQKEGRAKNERARDELKKLGHIDSRESRQKFQLWEQLAKEPVDRCCP
    FTGKMMSISDLFSDKVEIEHLLPFSLTLDDSMANKTVCFRQANRDKGNRAPFDAFGNSPAGYDW
    QEILGRSQNLPYAKRWRFLPDAMKRFEADGGFLERQLNDTRYISRYTTEYISTIIPKNKIWVVT
    GRLTSLLRGFWGLNSILRGHNTDDGTPAKKSRDDHRHHAIDAIVVGMTSRGLLQKVSKAARRSE
    DLDLTRLFEGRIDPWDGFRDEVKKHIDAIIVSHRPRKKSQGALHNDTAYGIVEHAENGASTVVH
    RVPITSLGKQSDIEKVRDPLIKSALLNETAGLSGKSFENAVQKWCADNSIKSLRIVETVSIIPI
    TDKEGVAYKGYKGDGNAYMDIYQDPTSSKWKGEIVSRFDANQKGFIPSWQSQFPTARLIMRLRI
    NDLLKLQDGEIEEIYRVQRLSGSKILMAPHTEANVDARDRDKNDTFKLTSKSPGKLQSASARKV
    HISPTGLIREG
    SEQ ID NO: 381
    MKNILGLDLGLSSIGWSVIRENSEEQELVAMGSRVVSLTAAELSSFTQGNGVSINSQRTQKRTQ
    RKGYDRYQLRRTLLRNKLDTLGMLPDDSLSYLPKLQLWGLRAKAVTQRIELNELGRVLLHLNQK
    RGYKSIKSDFSGDKKITDYVKTVKTRYDELKEMRLTIGELFFRRLTENAFFRCKEQVYPRQAYV
    EEFDCIMNCQRKFYPDILTDETIRCIRDEIIYYQRPLKSCKYLVSRCEFEKRFYLNAAGKKTEA
    GPKVSPRTSPLFQVCRLWESINNIVVKDRRNEIVFISAEQRAALFDFLNTHEKLKGSDLLKLLG
    LSKTYGYRLGEQFKTGIQGNKTRVEIERALGNYPDKKRLLQFNLQEESSSMVNTETGEIIPMIS
    LSFEQEPLYRLWHVLYSIDDREQLQSVLRQKFGIDDDEVLERLSAIDLVKAGFGNKSSKAIRRI
    LPFLQLGMNYAEACEAAGYNHSNNYTKAENEARALLDRLPAIKKNELRQPVVEKILNQMVNVVN
    ALMEKYGRFDEIRVELARELKQSKEERSNTYKSINKNQRENEQIAKRIVEYGVPTRSRIQKYKM
    WEESKHCCIYCGQPVDVGDFLRGFDVEVEHIIPKSLYFDDSFANKVCSCRSCNKEKNNRTAYDY
    MKSKGEKALSDYVERVNTMYTNNQISKTKWQNLLTPVDKISIDFIDRQLRESQYIARKAKEILT
    SICYNVTATSGSVTSFLRHVWGWDTVLHDLNFDRYKKVGLTEVIEVNHRGSVIRREQIKDWSKR
    FDHRHHAIDALTIACTKQAYIQRLNNLRAEEGPDFNKMSLERYIQSQPHFSVAQVREAVDRILV
    SFRAGKRAVTPGKRYIRKNRKRISVQSVLIPRGALSEESVYGVIHVWEKDEQGHVIQKQRAVMK
    YPITSINREMLDKEKVVDKRIHRILSGRLAQYNDNPKEAFAKPVYIDKECRIPIRTVRCFAKPA
    INTLVPLKKDDKGNPVAWVNPGNNHHVAIYRDEDGKYKERTVTFWEAVDRCRVGIPAIVTQPDT
    IWDNILQRNDISENVLESLPDVKWQFVLSLQQNEMFILGMNEEDYRYAMDQQDYALLNKYLYRV
    QKLSKSDYSFRYHTETSVEDKYDGKPNLKLSMQMGKLKRVSIKSLLGLNPHKVHISVLGEIKEI
    S
    SEQ ID NO: 382
    MAEKQHRWGLDIGTNSIGWAVIALIEGRPAGLVATGSRIFSDGRNPKDGSSLAVERRGPRQMRR
    RRDRYLRRRDRFMQALINVGLMPGDAAARKALVTENPYVLRQRGLDQALTLPEFGRALFHLNQR
    RGFQSNRKTDRATAKESGKVKNAIAAFRAGMGNARTVGEALARRLEDGRPVRARMVGQGKDEHY
    ELYIAREWIAQEFDALWASQQRFHAEVLADAARDRLRAILLFQRKLLPVPVGKCELEPNQPRVA
    AALPSAQRFRLMQELNHLRVMTLADKRERPLSFQERNDLLAQLVARPKCGFDMLRKIVFGANKE
    AYRFTIESERRKELKGCDTAAKLAKVNALGTRWQALSLDEQDRLVCLLLDGENDAVLADALREH
    YGLTDAQIDTLLGLSFEDGHMRLGRSALLRVLDALESGRDEQGLPLSYDKAVVAAGYPAHTADL
    ENGERDALPYYGELLWRYTQDAPTAKNDAERKFGKIANPTVHIGLNQLRKLVNALIQRYGKPAQ
    IVVELARNLKAGLEEKERIKKQQTANLERNERIRQKLQDAGVPDNRENRLRMRLFEELGQGNGL
    GTPCIYSGRQISLQRLFSNDVQVDHILPFSKTLDDSFANKVLAQHDANRYKGNRGPFEAFGANR
    DGYAWDDIRARAAVLPRNKRNRFAETAMQDWLHNETDFLARQLTDTAYLSRVARQYLTAICSKD
    DVYVSPGRLTAMLRAKWGLNRVLDGVMEEQGRPAVKNRDDHRHHAIDAVVIGATDRAMLQQVAT
    LAARAREQDAERLIGDMPTPWPNFLEDVRAAVARCVVSHKPDHGPEGGLHNDTAYGIVAGPFED
    GRYRVRHRVSLFDLKPGDLSNVRCDAPLQAELEPIFEQDDARAREVALTALAERYRQRKVWLEE
    LMSVLPIRPRGEDGKTLPDSAPYKAYKGDSNYCYELFINERGRWDGELISTFRANQAAYRRFRN
    DPARFRRYTAGGRPLLMRLCINDYIAVGTAAERTIFRVVKMSENKITLAEHFEGGTLKQRDADK
    DDPFKYLTKSPGALRDLGARRIFVDLIGRVLDPGIKGD
    SEQ ID NO: 383
    MIERILGVDLGISSLGWAIVEYDKDDEAANRIIDCGVRLFTAAETPKKKESPNKARREARGIRR
    VLNRRRVRMNMIKKLFLRAGLIQDVDLDGEGGMFYSKANRADVWELRHDGLYRLLKGDELARVL
    IHIAKHRGYKFIGDDEADEESGKVKKAGVVLRQNFEAAGCRTVGEWLWRERGANGKKRNKHGDY
    EISIHRDLLVEEVEAIFVAQQEMRSTIATDALKAAYREIAFFVRPMQRIEKMVGHCTYFPEERR
    APKSAPTAEKFIAISKFFSTVIIDNEGWEQKIIERKTLEELLDFAVSREKVEFRHLRKFLDLSD
    NEIFKGLHYKGKPKTAKKREATLFDPNEPTELEFDKVEAEKKAWISLRGAAKLREALGNEFYGR
    FVALGKHADEATKILTYYKDEGQKRRELTKLPLEAEMVERLVKIGFSDFLKLSLKAIRDILPAM
    ESGARYDEAVLMLGVPHKEKSAILPPLNKTDIDILNPTVIRAFAQFRKVANALVRKYGAFDRVH
    FELAREINTKGEIEDIKESQRKNEKERKEAADWIAETSFQVPLTRKNILKKRLYIQQDGRCAYT
    GDVIELERLFDEGYCEIDHILPRSRSADDSFANKVLCLARANQQKTDRTPYEWFGHDAARWNAF
    ETRTSAPSNRVRTGKGKIDRLLKKNFDENSEMAFKDRNLNDTRYMARAIKTYCEQYWVFKNSHT
    KAPVQVRSGKLTSVLRYQWGLESKDRESHTHHAVDAIIIAFSTQGMVQKLSEYYRFKETHREKE
    RPKLAVPLANFRDAVEEATRIENTETVKEGVEVKRLLISRPPRARVTGQAHEQTAKPYPRIKQV
    KNKKKWRLAPIDEEKFESFKADRVASANQKNFYETSTIPRVDVYHKKGKFHLVPIYLHEMVLNE
    LPNLSLGTNPEAMDENFFKFSIFKDDLISIQTQGTPKKPAKIIMGYFKNMHGANMVLSSINNSP
    CEGFTCTPVSMDKKHKDKCKLCPEENRIAGRCLQGFLDYWSQEGLRPPRKEFECDQGVKFALDV
    KKYQIDPLGYYYEVKQEKRLGTIPQMRSAKKLVKK
    SEQ ID NO: 384
    MNNSIKSKPEVTIGLDLGVGSVGWAIVDNETNIIHHLGSRLFSQAKTAEDRRSFRGVRRLIRRR
    KYKLKRFVNLIWKYNSYFGFKNKEDILNNYQEQQKLHNTVLNLKSEALNAKIDPKALSWILHDY
    LKNRGHFYEDNRDFNVYPTKELAKYFDKYGYYKGIIDSKEDNDNKLEEELTKYKFSNKHWLEEV
    KKVLSNQTGLPEKFKEEYESLFSYVRNYSEGPGSINSVSPYGIYHLDEKEGKVVQKYNNIWDKT
    IGKCNIFPDEYRAPKNSPIAMIFNEINELSTIRSYSIYLTGWFINQEFKKAYLNKLLDLLIKTN
    GEKPIDARQFKKLREETIAESIGKETLKDVENEEKLEKEDHKWKLKGLKLNTNGKIQYNDLSSL
    AKFVHKLKQHLKLDFLLEDQYATLDKINFLQSLFVYLGKHLRYSNRVDSANLKEFSDSNKLFER
    ILQKQKDGLFKLFEQTDKDDEKILAQTHSLSTKAMLLAITRMTNLDNDEDNQKNNDKGWNFEAI
    KNFDQKFIDITKKNNNLSLKQNKRYLDDRFINDAILSPGVKRILREATKVFNAILKQFSEEYDV
    TKVVIELARELSEEKELENTKNYKKLIKKNGDKISEGLKALGISEDEIKDILKSPTKSYKFLLW
    LQQDHIDPYSLKEIAFDDIFTKTEKFEIDHIIPYSISFDDSSSNKLLVLAESNQAKSNQTPYEF
    ISSGNAGIKWEDYEAYCRKFKDGDSSLLDSTQRSKKFAKMMKTDTSSKYDIGFLARNLNDTRYA
    TIVFRDALEDYANNHLVEDKPMFKVVCINGSVTSFLRKNFDDSSYAKKDRDKNIHHAVDASIIS
    IFSNETKTLFNQLTQFADYKLFKNTDGSWKKIDPKTGVVTEVTDENWKQIRVRNQVSEIAKVIE
    KYIQDSNIERKARYSRKIENKTNISLFNDTVYSAKKVGYEDQIKRKNLKTLDIHESAKENKNSK
    VKRQFVYRKLVNVSLLNNDKLADLFAEKEDILMYRANPWVINLAEQIFNEYTENKKIKSQNVFE
    KYMLDLTKEFPEKFSEFLVKSMLRNKTAIIYDDKKNIVHRIKRLKMLSSELKENKLSNVIIRSK
    NQSGTKLSYQDTINSLALMIMRSIDPTAKKQYIRVPLNTLNLHLGDHDFDLHNMDAYLKKPKFV
    KYLKANEIGDEYKPWRVLTSGTLLIHKKDKKLMYISSFQNLNDVIEIKNLIETEYKENDDSDSK
    KKKKANRFLMTLSTILNDYILLDAKDNFDILGLSKNRIDEILNSKLGLDKIVK
    SEQ ID NO: 385
    MGGSEVGTVPVTWRLGVDVGERSIGLAAVSYEEDKPKEILAAVSWIHDGGVGDERSGASRLALR
    GMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDAWLARKRLAEEYVVDETERRRLL
    GYAVSHMARHRGWRNPWTTIKDLKNLPQPSDSWERTRESLEARYSVSLEPGTVGQWAGYLLQRA
    PGIRLNPTQQSAGRRAELSNATAFETRLRQEDVLWELRCIADVQGLPEDVVSNVIDAVFCQKRP
    SVPAERIGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEERNAVIEALLAQ
    TERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAPFDETSARIAEFIAKNRRKIPTF
    AQWWQEQDRTSRSDLVAALADNSIAGEEEQELLVHLPDAELEALEGLALPSGRVAYSRLTLSGL
    TRVMRDDGVDVHNARKTCFGVDDNWRPPLPALHEATGHPVVDRNLAILRKFLSSATMRWGPPQS
    IVVELARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPSPADLVRARLLELYDCHCM
    YCGAPISWENSELDHIVPRTDGGSNRHENLAITCGACNKEKGRRPFASWAETSNRVQLRDVIDR
    VQKLKYSGNMYWTRDEFSRYKKSVVARLKRRTSDPEVIQSIESTGYAAVALRDRLLSYGEKNGV
    AQVAVFRGGVTAEARRWLDISIERLFSRVAIFAQSTSTKRLDRRHHAVDAVVLTTLTPGVAKTL
    ADARSRRVSAEFWRRPSDVNRHSTEEPQSPAYRQWKESCSGLGDLLISTAARDSIAVAAPLRLR
    PTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVYAAFLALTDPGGRFLKVSPSEDVLPADEN
    RHIVLSDRVLGPRDRVKLFPDDRGSIRVRGGAAYIASFHHARVFRWGSSHSPSFALLRVSLADL
    AVAGLLRDGVDVFTAELPPWTPAWRYASIALVKAVESGDAKQVGWLVPGDELDFGPEGVTTAAG
    DLSMFLKYFPERHWVVTGFEDDKRINLKPAFLSAEQAEVLRTERSDRPDTLTEAGEILAQFFPR
    CWRATVAKVLCHPGLTVIRRTALGQPRWRRGHLPYSWRPWSADPWSGGTP
    SEQ ID NO: 386
    MHNKKNITIGFDLGIASIGWAIIDSTTSKILDWGTRTFEERKTANERRAFRSTRRNIRRKAYRN
    QRFINLILKYKDLFELKNISDIQRANKKDTENYEKIISFFTEIYKKCAAKHSNILEVKVKALDS
    KIEKLDLIWILHDYLENRGFFYDLEEENVADKYEGIEHPSILLYDFFKKNGFFKSNSSIPKDLG
    GYSFSNLQWVNEIKKLFEVQEINPEFSEKFLNLFTSVRDYAKGPGSEHSASEYGIFQKDEKGKV
    FKKYDNIWDKTIGKCSFFVEENRSPVNYPSYEIFNLLNQLINLSTDLKTTNKKIWQLSSNDRNE
    LLDELLKVKEKAKIISISLKKNEIKKIILKDFGFEKSDIDDQDTIEGRKIIKEEPTTKLEVTKH
    LLATIYSHSSDSNWININNILEFLPYLDAICIILDREKSRGQDEVLKKLTEKNIFEVLKIDREK
    QLDFVKSIFSNTKFNFKKIGNFSLKAIREFLPKMFEQNKNSEYLKWKDEEIRRKWEEQKSKLGK
    TDKKTKYLNPRIFQDEIISPGTKNTFEQAVLVLNQIIKKYSKENIIDAIIIESPREKNDKKTIE
    EIKKRNKKGKGKTLEKLFQILNLENKGYKLSDLETKPAKLLDRLRFYHQQDGIDLYTLDKINID
    QLINGSQKYEIEHIIPYSMSYDNSQANKILTEKAENLKKGKLIASEYIKRNGDEFYNKYYEKAK
    ELFINKYKKNKKLDSYVDLDEDSAKNRFRFLTLQDYDEFQVEFLARNLNDTRYSTKLFYHALVE
    HFENNEFFTYIDENSSKHKVKISTIKGHVTKYFRAKPVQKNNGPNENLNNNKPEKIEKNRENNE
    HHAVDAAIVAIIGNKNPQIANLLTLADNKTDKKFLLHDENYKENIETGELVKIPKFEVDKLAKV
    EDLKKIIQEKYEEAKKHTAIKFSRKTRTILNGGLSDETLYGFKYDEKEDKYFKIIKKKLVTSKN
    EELKKYFENPFGKKADGKSEYTVLMAQSHLSEFNKLKEIFEKYNGFSNKTGNAFVEYMNDLALK
    EPTLKAEIESAKSVEKLLYYNFKPSDQFTYHDNINNKSFKRFYKNIRIIEYKSIPIKFKILSKH
    DGGKSFKDTLFSLYSLVYKVYENGKESYKSIPVTSQMRNFGIDEFDFLDENLYNKEKLDIYKSD
    FAKPIPVNCKPVFVLKKGSILKKKSLDIDDFKETKETEEGNYYFISTISKRFNRDTAYGLKPLK
    LSVVKPVAEPSTNPIFKEYIPIHLDELGNEYPVKIKEHTDDEKLMCTIK
  • Nucleic Acids Encoding Cas9 Molecules
  • Nucleic acids encoding the Cas9 molecules or Cas9 polypeptides, e.g., an eaCas9 molecule or eaCas9 polypeptides are provided herein.
  • Exemplary nucleic acids encoding Cas9 molecules or Cas9 polypeptides are described in Cong et al., SCIENCE 2013, 399(6121):819-823; Wang et al., CELL 2013, 153(4):910-918; Mali et al., SCIENCE 2013, 399(6121):823-826; Jinek et al., SCIENCE 2012, 337(6096):816-821. Another exemplary nucleic acid encoding a Cas9 molecule or Cas9 polypeptide is shown in FIG. 8 .
  • In an embodiment, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide can be a synthetic nucleic acid sequence. For example, the synthetic nucleic acid molecule can be chemically modified, e.g., as described in Section VIII. In an embodiment, the Cas9 mRNA has one or more (e.g., all of the following properties: it is capped, polyadenylated, substituted with 5-methylcytidine and/or pseudouridine.
  • In addition, or alternatively, the synthetic nucleic acid sequence can be codon optimized, e.g., at least one non-common codon or less-common codon has been replaced by a common codon. For example, the synthetic nucleic acid can direct the synthesis of an optimized messenger mRNA, e.g., optimized for expression in a mammalian expression system, e.g., described herein.
  • In addition, or alternatively, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide may comprise a nuclear localization sequence (NLS). Nuclear localization sequences are known in the art.
  • Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. pyogenes.
  • (SEQ ID NO: 22) 
    ATGGATAAAA AGTACAGCAT CGGGCTGGAC ATCGGTACAA
    ACTCAGTGGG GTGGGCCGTG ATTACGGACG AGTACAAGGT
    ACCCTCCAAA AAATTTAAAG TGCTGGGTAA CACGGACAGA
    CACTCTATAA AGAAAAATCT TATTGGAGCC TTGCTGTTCG
    ACTCAGGCGA GACAGCCGAA GCCACAAGGT TGAAGCGGAC
    CGCCAGGAGG CGGTATACCA GGAGAAAGAA CCGCATATGC
    TACCTGCAAG AAATCTTCAG TAACGAGATG GCAAAGGTTG
    ACGATAGCTT TTTCCATCGC CTGGAAGAAT CCTTTCTTGT
    TGAGGAAGAC AAGAAGCACG AACGGCACCC CATCTTTGGC
    AATATTGTCG ACGAAGTGGC ATATCACGAA AAGTACCCGA
    CTATCTACCA CCTCAGGAAG AAGCTGGTGG ACTCTACCGA
    TAAGGCGGAC CTCAGACTTA TTTATTTGGC ACTCGCCCAC
    ATGATTAAAT TTAGAGGACA TTTCTTGATC GAGGGCGACC
    TGAACCCGGA CAACAGTGAC GTCGATAAGC TGTTCATCCA
    ACTTGTGCAG ACCTACAATC AACTGTTCGA AGAAAACCCT
    ATAAATGCTT CAGGAGTCGA CGCTAAAGCA ATCCTGTCCG
    CGCGCCTCTC AAAATCTAGA AGACTTGAGA ATCTGATTGC
    TCAGTTGCCC GGGGAAAAGA AAAATGGATT GTTTGGCAAC
    CTGATCGCCC TCAGTCTCGG ACTGACCCCA AATTTCAAAA
    GTAACTTCGA CCTGGCCGAA GACGCTAAGC TCCAGCTGTC
    CAAGGACACA TACGATGACG ACCTCGACAA TCTGCTGGCC
    CAGATTGGGG ATCAGTACGC CGATCTCTTT TTGGCAGCAA
    AGAACCTGTC CGACGCCATC CTGTTGAGCG ATATCTTGAG
    AGTGAACACC GAAATTACTA AAGCACCCCT TAGCGCATCT
    ATGATCAAGC GGTACGACGA GCATCATCAG GATCTGACCC
    TGCTGAAGGC TCTTGTGAGG CAACAGCTCC CCGAAAAATA
    CAAGGAAATC TTCTTTGACC AGAGCAAAAA CGGCTACGCT
    GGCTATATAG ATGGTGGGGC CAGTCAGGAG GAATTCTATA
    AATTCATCAA GCCCATTCTC GAGAAAATGG ACGGCACAGA
    GGAGTTGCTG GTCAAACTTA ACAGGGAGGA CCTGCTGCGG
    AAGCAGCGGA CCTTTGACAA CGGGTCTATC CCCCACCAGA
    TTCATCTGGG CGAACTGCAC GCAATCCTGA GGAGGCAGGA
    GGATTTTTAT CCTTTTCTTA AAGATAACCG CGAGAAAATA
    GAAAAGATTC TTACATTCAG GATCCCGTAC TACGTGGGAC
    CTCTCGCCCG GGGCAATTCA CGGTTTGCCT GGATGACAAG
    GAAGTCAGAG GAGACTATTA CACCTTGGAA CTTCGAAGAA
    GTGGTGGACA AGGGTGCATC TGCCCAGTCT TTCATCGAGC
    GGATGACAAA TTTTGACAAG AACCTCCCTA ATGAGAAGGT
    GCTGCCCAAA CATTCTCTGC TCTACGAGTA CTTTACCGTC
    TACAATGAAC TGACTAAAGT CAAGTACGTC ACCGAGGGAA
    TGAGGAAGCC GGCATTCCTT AGTGGAGAAC AGAAGAAGGC
    GATTGTAGAC CTGTTGTTCA AGACCAACAG GAAGGTGACT
    GTGAAGCAAC TTAAAGAAGA CTACTTTAAG AAGATCGAAT
    GTTTTGACAG TGTGGAAATT TCAGGGGTTG AAGACCGCTT
    CAATGCGTCA TTGGGGACTT ACCATGATCT TCTCAAGATC
    ATAAAGGACA AAGACTTCCT GGACAACGAA GAAAATGAGG
    ATATTCTCGA AGACATCGTC CTCACCCTGA CCCTGTTCGA
    AGACAGGGAA ATGATAGAAG AGCGCTTGAA AACCTATGCC
    CACCTCTTCG ACGATAAAGT TATGAAGCAG CTGAAGCGCA
    GGAGATACAC AGGATGGGGA AGATTGTCAA GGAAGCTGAT
    CAATGGAATT AGGGATAAAC AGAGTGGCAA GACCATACTG
    GATTTCCTCA AATCTGATGG CTTCGCCAAT AGGAACTTCA
    TGCAACTGAT TCACGATGAC TCTCTTACCT TCAAGGAGGA
    CATTCAAAAG GCTCAGGTGA GCGGGCAGGG AGACTCCCTT
    CATGAACACA TCGCGAATTT GGCAGGTTCC CCCGCTATTA
    AAAAGGGCAT CCTTCAAACT GTCAAGGTGG TGGATGAATT
    GGTCAAGGTA ATGGGCAGAC ATAAGCCAGA AAATATTGTG
    ATCGAGATGG CCCGCGAAAA CCAGACCACA CAGAAGGGCC
    AGAAAAATAG TAGAGAGCGG ATGAAGAGGA TCGAGGAGGG
    CATCAAAGAG CTGGGATCTC AGATTGTCAA AGAACACCCC
    GTAGAAAACA CACAGCTGCA GAACGAAAAA TTGTACTTGT
    ACTATCTGCA GAACGGCAGA GACATGTACG TCGACCAAGA
    ACTTGATATT AATAGACTGT CCGACTATGA CGTAGACCAT
    ATCGTGCCCC AGTCCTTCCT GAAGGACGAC TCCATTGATA
    ACAAAGTCTT GACAAGAAGC GACAAGAACA GGGGTAAAAG
    TGATAATGTG CCTAGCGAGG AGGTGGTGAA AAAAATGAAG
    AACTACTGGC GACAGCTGCT TAATGCAAAG CTCATTACAC
    AACGGAAGTT CGATAATCTG ACGAAAGCAG AGAGAGGTGG
    CTTGTCTGAG TTGGACAAGG CAGGGTTTAT TAAGCGGCAG
    CTGGTGGAAA CTAGGCAGAT CACAAAGCAC GTGGCGCAGA
    TTTTGGACAG CCGGATGAAC ACAAAATACG ACGAAAATGA
    TAAACTGATA CGAGAGGTCA AAGTTATCAC GCTGAAAAGC
    AAGCTGGTGT CCGATTTTCG GAAAGACTTC CAGTTCTACA
    AAGTTCGCGA GATTAATAAC TACCATCATG CTCACGATGC
    GTACCTGAAC GCTGTTGTCG GGACCGCCTT GATAAAGAAG
    TACCCAAAGC TGGAATCCGA GTTCGTATAC GGGGATTACA
    AAGTGTACGA TGTGAGGAAA ATGATAGCCA AGTCCGAGCA
    GGAGATTGGA AAGGCCACAG CTAAGTACTT CTTTTATTCT
    AACATCATGA ATTTTTTTAA GACGGAAATT ACCCTGGCCA
    ACGGAGAGAT CAGAAAGCGG CCCCTTATAG AGACAAATGG
    TGAAACAGGT GAAATCGTCT GGGATAAGGG CAGGGATTTC
    GCTACTGTGA GGAAGGTGCT GAGTATGCCA CAGGTAAATA
    TCGTGAAAAA AACCGAAGTA CAGACCGGAG GATTTTCCAA
    GGAAAGCATT TTGCCTAAAA GAAACTCAGA CAAGCTCATC
    GCCCGCAAGA AAGATTGGGA CCCTAAGAAA TACGGGGGAT
    TTGACTCACC CACCGTAGCC TATTCTGTGC TGGTGGTAGC
    TAAGGTGGAA AAAGGAAAGT CTAAGAAGCT GAAGTCCGTG
    AAGGAACTCT TGGGAATCAC TATCATGGAA AGATCATCCT
    TTGAAAAGAA CCCTATCGAT TTCCTGGAGG CTAAGGGTTA
    CAAGGAGGTC AAGAAAGACC TCATCATTAA ACTGCCAAAA
    TACTCTCTCT TCGAGCTGGA AAATGGCAGG AAGAGAATGT
    TGGCCAGCGC CGGAGAGCTG CAAAAGGGAA ACGAGCTTGC
    TCTGCCCTCC AAATATGTTA ATTTTCTCTA TCTCGCTTCC
    CACTATGAAA AGCTGAAAGG GTCTCCCGAA GATAACGAGC
    AGAAGCAGCT GTTCGTCGAA CAGCACAAGC ACTATCTGGA
    TGAAATAATC GAACAAATAA GCGAGTTCAG CAAAAGGGTT
    ATCCTGGCGG ATGCTAATTT GGACAAAGTA CTGTCTGCTT
    ATAACAAGCA CCGGGATAAG CCTATTAGGG AACAAGCCGA
    GAATATAATT CACCTCTTTA CACTCACGAA TCTCGGAGCC
    CCCGCCGCCT TCAAATACTT TGATACGACT ATCGACCGGA
    AACGGTATAC CAGTAGCAAA GAGGTCCTCG ATGCCACCCT
    CATCCACCAG TCAATTACTG GCCTGTACGA AACACGGATC
    GACCTCTCTC AACTGGGCGG CGAGTAG
  • Provided below is the corresponding amino acid sequence of a S. pyogenes Cas9 molecule.
  • (SEQ ID NO: 23)
    MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRL
    KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY
    HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY
    NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF
    DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS
    MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD
    GTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI
    PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS
    LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD
    SVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA
    HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF
    KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ
    TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR
    LSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK
    FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS
    KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK
    SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS
    MPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG
    KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLAS
    AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRV
    ILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD
    ATLIHQSITGLYETRIDLSQLGGD*
  • Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of N. meningitidis.
  • (SEQ ID NO: 24)
    ATGGCCGCCTTCAAGCCCAACCCCATCAACTACATCCTGGGCCTGGACATCGGCATCGCCAGCG
    TGGGCTGGGCCATGGTGGAGATCGACGAGGACGAGAACCCCATCTGCCTGATCGACCTGGGTGT
    GCGCGTGTTCGAGCGCGCTGAGGTGCCCAAGACTGGTGACAGTCTGGCTATGGCTCGCCGGCTT
    GCTCGCTCTGTTCGGCGCCTTACTCGCCGGCGCGCTCACCGCCTTCTGCGCGCTCGCCGCCTGC
    TGAAGCGCGAGGGTGTGCTGCAGGCTGCCGACTTCGACGAGAACGGCCTGATCAAGAGCCTGCC
    CAACACTCCTTGGCAGCTGCGCGCTGCCGCTCTGGACCGCAAGCTGACTCCTCTGGAGTGGAGC
    GCCGTGCTGCTGCACCTGATCAAGCACCGCGGCTACCTGAGCCAGCGCAAGAACGAGGGCGAGA
    CCGCCGACAAGGAGCTGGGTGCTCTGCTGAAGGGCGTGGCCGACAACGCCCACGCCCTGCAGAC
    TGGTGACTTCCGCACTCCTGCTGAGCTGGCCCTGAACAAGTTCGAGAAGGAGAGCGGCCACATC
    CGCAACCAGCGCGGCGACTACAGCCACACCTTCAGCCGCAAGGACCTGCAGGCCGAGCTGATCC
    TGCTGTTCGAGAAGCAGAAGGAGTTCGGCAACCCCCACGTGAGCGGCGGCCTGAAGGAGGGCAT
    CGAGACCCTGCTGATGACCCAGCGCCCCGCCCTGAGCGGCGACGCCGTGCAGAAGATGCTGGGC
    CACTGCACCTTCGAGCCAGCCGAGCCCAAGGCCGCCAAGAACACCTACACCGCCGAGCGCTTCA
    TCTGGCTGACCAAGCTGAACAACCTGCGCATCCTGGAGCAGGGCAGCGAGCGCCCCCTGACCGA
    CACCGAGCGCGCCACCCTGATGGACGAGCCCTACCGCAAGAGCAAGCTGACCTACGCCCAGGCC
    CGCAAGCTGCTGGGTCTGGAGGACACCGCCTTCTTCAAGGGCCTGCGCTACGGCAAGGACAACG
    CCGAGGCCAGCACCCTGATGGAGATGAAGGCCTACCACGCCATCAGCCGCGCCCTGGAGAAGGA
    GGGCCTGAAGGACAAGAAGAGTCCTCTGAACCTGAGCCCCGAGCTGCAGGACGAGATCGGCACC
    GCCTTCAGCCTGTTCAAGACCGACGAGGACATCACCGGCCGCCTGAAGGACCGCATCCAGCCCG
    AGATCCTGGAGGCCCTGCTGAAGCACATCAGCTTCGACAAGTTCGTGCAGATCAGCCTGAAGGC
    CCTGCGCCGCATCGTGCCCCTGATGGAGCAGGGCAAGCGCTACGACGAGGCCTGCGCCGAGATC
    TACGGCGACCACTACGGCAAGAAGAACACCGAGGAGAAGATCTACCTGCCTCCTATCCCCGCCG
    ACGAGATCCGCAACCCCGTGGTGCTGCGCGCCCTGAGCCAGGCCCGCAAGGTGATCAACGGCGT
    GGTGCGCCGCTACGGCAGCCCCGCCCGCATCCACATCGAGACCGCCCGCGAGGTGGGCAAGAGC
    TTCAAGGACCGCAAGGAGATCGAGAAGCGCCAGGAGGAGAACCGCAAGGACCGCGAGAAGGCCG
    CCGCCAAGTTCCGCGAGTACTTCCCCAACTTCGTGGGCGAGCCCAAGAGCAAGGACATCCTGAA
    GCTGCGCCTGTACGAGCAGCAGCACGGCAAGTGCCTGTACAGCGGCAAGGAGATCAACCTGGGC
    CGCCTGAACGAGAAGGGCTACGTGGAGATCGACCACGCCCTGCCCTTCAGCCGCACCTGGGACG
    ACAGCTTCAACAACAAGGTGCTGGTGCTGGGCAGCGAGAACCAGAACAAGGGCAACCAGACCCC
    CTACGAGTACTTCAACGGCAAGGACAACAGCCGCGAGTGGCAGGAGTTCAAGGCCCGCGTGGAG
    ACCAGCCGCTTCCCCCGCAGCAAGAAGCAGCGCATCCTGCTGCAGAAGTTCGACGAGGACGGCT
    TCAAGGAGCGCAACCTGAACGACACCCGCTACGTGAACCGCTTCCTGTGCCAGTTCGTGGCCGA
    CCGCATGCGCCTGACCGGCAAGGGCAAGAAGCGCGTGTTCGCCAGCAACGGCCAGATCACCAAC
    CTGCTGCGCGGCTTCTGGGGCCTGCGCAAGGTGCGCGCCGAGAACGACCGCCACCACGCCCTGG
    ACGCCGTGGTGGTGGCCTGCAGCACCGTGGCCATGCAGCAGAAGATCACCCGCTTCGTGCGCTA
    CAAGGAGATGAACGCCTTCGACGGTAAAACCATCGACAAGGAGACCGGCGAGGTGCTGCACCAG
    AAGACCCACTTCCCCCAGCCCTGGGAGTTCTTCGCCCAGGAGGTGATGATCCGCGTGTTCGGCA
    AGCCCGACGGCAAGCCCGAGTTCGAGGAGGCCGACACCCCCGAGAAGCTGCGCACCCTGCTGGC
    CGAGAAGCTGAGCAGCCGCCCTGAGGCCGTGCACGAGTACGTGACTCCTCTGTTCGTGAGCCGC
    GCCCCCAACCGCAAGATGAGCGGTCAGGGTCACATGGAGACCGTGAAGAGCGCCAAGCGCCTGG
    ACGAGGGCGTGAGCGTGCTGCGCGTGCCCCTGACCCAGCTGAAGCTGAAGGACCTGGAGAAGAT
    GGTGAACCGCGAGCGCGAGCCCAAGCTGTACGAGGCCCTGAAGGCCCGCCTGGAGGCCCACAAG
    GACGACCCCGCCAAGGCCTTCGCCGAGCCCTTCTACAAGTACGACAAGGCCGGCAACCGCACCC
    AGCAGGTGAAGGCCGTGCGCGTGGAGCAGGTGCAGAAGACCGGCGTGTGGGTGCGCAACCACAA
    CGGCATCGCCGACAACGCCACCATGGTGCGCGTGGACGTGTTCGAGAAGGGCGACAAGTACTAC
    CTGGTGCCCATCTACAGCTGGCAGGTGGCCAAGGGCATCCTGCCCGACCGCGCCGTGGTGCAGG
    GCAAGGACGAGGAGGACTGGCAGCTGATCGACGACAGCTTCAACTTCAAGTTCAGCCTGCACCC
    CAACGACCTGGTGGAGGTGATCACCAAGAAGGCCCGCATGTTCGGCTACTTCGCCAGCTGCCAC
    CGCGGCACCGGCAACATCAACATCCGCATCCACGACCTGGACCACAAGATCGGCAAGAACGGCA
    TCCTGGAGGGCATCGGCGTGAAGACCGCCCTGAGCTTCCAGAAGTACCAGATCGACGAGCTGGG
    CAAGGAGATCCGCCCCTGCCGCCTGAAGAAGCGCCCTCCTGTGCGCTAA
  • Provided below is the corresponding amino acid sequence of a N. meningitidis Cas9 molecule.
  • (SEQ ID NO: 25)
    MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL
    ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS
    AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI
    RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG
    HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA
    RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLNLSPELQDEIGT
    AFSLFKTDEDITGRLKDRIQPEILEALLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEI
    YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS
    FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG
    RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE
    TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN
    LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ
    KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR
    APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK
    DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY
    LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH
    RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR*
  • Provided below is an amino acid sequence of a S. aureus Cas9 molecule.
  • (SEQ ID NO: 26)
    MKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI
    QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT
    GNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQ
    LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY
    NALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK
    PEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS
    NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP
    VVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTT
    GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRSVSFDNSFNNKVLVK
    QEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDINRFSVQKD
    FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAED
    ALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD
    YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH
    DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD
    YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNOA
    EFIASEYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRIIKTIASKT
    QSIKKYSTDILGNLYEVKSKKHPQIIKKG*
  • Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. aureus Cas9.
  • (SEQ ID NO: 39)
    ATGAAAAGGAACTACATTCTGGGGCTGGACATCGGGATTACAAGCGTGGGGTATGGGATTATTG
    ACTATGAAACAAGGGACGTGATCGACGCAGGCGTCAGACTGTTCAAGGAGGCCAACGTGGAAAA
    CAATGAGGGACGGAGAAGCAAGAGGGGAGCCAGGCGCCTGAAACGACGGAGAAGGCACAGAATC
    CAGAGGGTGAAGAAACTGCTGTTCGATTACAACCTGCTGACCGACCATTCTGAGCTGAGTGGAA
    TTAATCCTTATGAAGCCAGGGTGAAAGGCCTGAGTCAGAAGCTGTCAGAGGAAGAGTTTTCCGC
    AGCTCTGCTGCACCTGGCTAAGCGCCGAGGAGTGCATAACGTCAATGAGGTGGAAGAGGACACC
    GGCAACGAGCTGTCTACAAAGGAACAGATCTCACGCAATAGCAAAGCTCTGGAAGAGAAGTATG
    TCGCAGAGCTGCAGCTGGAACGGCTGAAGAAAGATGGCGAGGTGAGAGGGTCAATTAATAGGTT
    CAAGACAAGCGACTACGTCAAAGAAGCCAAGCAGCTGCTGAAAGTGCAGAAGGCTTACCACCAG
    CTGGATCAGAGCTTCATCGATACTTATATCGACCTGCTGGAGACTCGGAGAACCTACTATGAGG
    GACCAGGAGAAGGGAGCCCCTTCGGATGGAAAGACATCAAGGAATGGTACGAGATGCTGATGGG
    ACATTGCACCTATTTTCCAGAAGAGCTGAGAAGCGTCAAGTACGCTTATAACGCAGATCTGTAC
    AACGCCCTGAATGACCTGAACAACCTGGTCATCACCAGGGATGAAAACGAGAAACTGGAATACT
    ATGAGAAGTTCCAGATCATCGAAAACGTGTTTAAGCAGAAGAAAAAGCCTACACTGAAACAGAT
    TGCTAAGGAGATCCTGGTCAACGAAGAGGACATCAAGGGCTACCGGGTGACAAGCACTGGAAAA
    CCAGAGTTCACCAATCTGAAAGTGTATCACGATATTAAGGACATCACAGCACGGAAAGAAATCA
    TTGAGAACGCCGAACTGCTGGATCAGATTGCTAAGATCCTGACTATCTACCAGAGCTCCGAGGA
    CATCCAGGAAGAGCTGACTAACCTGAACAGCGAGCTGACCCAGGAAGAGATCGAACAGATTAGT
    AATCTGAAGGGGTACACCGGAACACACAACCTGTCCCTGAAAGCTATCAATCTGATTCTGGATG
    AGCTGTGGCATACAAACGACAATCAGATTGCAATCTTTAACCGGCTGAAGCTGGTCCCAAAAAA
    GGTGGACCTGAGTCAGCAGAAAGAGATCCCAACCACACTGGTGGACGATTTCATTCTGTCACCC
    GTGGTCAAGCGGAGCTTCATCCAGAGCATCAAAGTGATCAACGCCATCATCAAGAAGTACGGCC
    TGCCCAATGATATCATTATCGAGCTGGCTAGGGAGAAGAACAGCAAGGACGCACAGAAGATGAT
    CAATGAGATGCAGAAACGAAACCGGCAGACCAATGAACGCATTGAAGAGATTATCCGAACTACC
    GGGAAAGAGAACGCAAAGTACCTGATTGAAAAAATCAAGCTGCACGATATGCAGGAGGGAAAGT
    GTCTGTATTCTCTGGAGGCCATCCCCCTGGAGGACCTGCTGAACAATCCATTCAACTACGAGGT
    CGATCATATTATCCCCAGAAGCGTGTCCTTCGACAATTCCTTTAACAACAAGGTGCTGGTCAAG
    CAGGAAGAGAACTCTAAAAAGGGCAATAGGACTCCTTTCCAGTACCTGTCTAGTTCAGATTCCA
    AGATCTCTTACGAAACCTTTAAAAAGCACATTCTGAATCTGGCCAAAGGAAAGGGCCGCATCAG
    CAAGACCAAAAAGGAGTACCTGCTGGAAGAGCGGGACATCAACAGATTCTCCGTCCAGAAGGAT
    TTTATTAACCGGAATCTGGTGGACACAAGATACGCTACTCGCGGCCTGATGAATCTGCTGCGAT
    CCTATTTCCGGGTGAACAATCTGGATGTGAAAGTCAAGTCCATCAACGGCGGGTTCACATCTTT
    TCTGAGGCGCAAATGGAAGTTTAAAAAGGAGCGCAACAAAGGGTACAAGCACCATGCCGAAGAT
    GCTCTGATTATCGCAAATGCCGACTTCATCTTTAAGGAGTGGAAAAAGCTGGACAAAGCCAAGA
    AAGTGATGGAGAACCAGATGTTCGAAGAGAAGCAGGCCGAATCTATGCCCGAAATCGAGACAGA
    ACAGGAGTACAAGGAGATTTTCATCACTCCTCACCAGATCAAGCATATCAAGGATTTCAAGGAC
    TACAAGTACTCTCACCGGGTGGATAAAAAGCCCAACAGAGAGCTGATCAATGACACCCTGTATA
    GTACAAGAAAAGACGATAAGGGGAATACCCTGATTGTGAACAATCTGAACGGACTGTACGACAA
    AGATAATGACAAGCTGAAAAAGCTGATCAACAAAAGTCCCGAGAAGCTGCTGATGTACCACCAT
    GATCCTCAGACATATCAGAAACTGAAGCTGATTATGGAGCAGTACGGCGACGAGAAGAACCCAC
    TGTATAAGTACTATGAAGAGACTGGGAACTACCTGACCAAGTATAGCAAAAAGGATAATGGCCC
    CGTGATCAAGAAGATCAAGTACTATGGGAACAAGCTGAATGCCCATCTGGACATCACAGACGAT
    TACCCTAACAGTCGCAACAAGGTGGTCAAGCTGTCACTGAAGCCATACAGATTCGATGTCTATC
    TGGACAACGGCGTGTATAAATTTGTGACTGTCAAGAATCTGGATGTCATCAAAAAGGAGAACTA
    CTATGAAGTGAATAGCAAGTGCTACGAAGAGGCTAAAAAGCTGAAAAAGATTAGCAACCAGGCA
    GAGTTCATCGCCTCCTTTTACAACAACGACCTGATTAAGATCAATGGCGAACTGTATAGGGTCA
    TCGGGGTGAACAATGATCTGCTGAACCGCATTGAAGTGAATATGATTGACATCACTTACCGAGA
    GTATCTGGAAAACATGAATGATAAGCGCCCCCCTCGAATTATCAAAACAATTGCCTCTAAGACT
    CAGAGTATCAAAAAGTACTCAACCGACATTCTGGGAAACCTGTATGAGGTGAAGAGCAAAAAGC
    ACCCTCAGATTATCAAAAAGGGC
  • If any of the above Cas9 sequences are fused with a peptide or polypeptide at the C-terminus, it is understood that the stop codon will be removed.
  • Other Cas Molecules and Cas Polypeptides
  • Various types of Cas molecules or Cas polypeptides can be used to practice the inventions disclosed herein. In some embodiments, Cas molecules of Type II Cas systems are used. In other embodiments, Cas molecules of other Cas systems are used. For example, Type I or Type III Cas molecules may be used. Exemplary Cas molecules (and Cas systems) are described, e.g., in Haft et al., PLOS COMPUTATIONAL BIOLOGY 2005, 1(6): e60 and Makarova et al., NATURE REVIEW MICROBIOLOGY 2011, 9:467-477, the contents of both references are incorporated herein by reference in their entirety. Exemplary Cas molecules (and Cas systems) are also shown in Table 33.
  • TABLE 33
    Cas Systems
    Structure of Families (and
    encoded superfamily)
    protein of
    Gene System type Name from (PDB encoded
    name or subtype Haft et al.§ accessions) protein#** Representatives
    cas1 Type I cas1 3GOD, 3LFX COG1518 SERP2463, SPy1047
    Type II and 2YZS and ygbT
    Type III
    cas2 Type I cas2 2IVY, 2I8E and COG1343 and SERP2462, SPy1048,
    Type II 3EXC COG3512 SPy1723 (N-terminal
    Type III domain) and ygbF
    cas3′ Type I‡‡ cas3 NA COG1203 APE1232 and ygcB
    cas3″ Subtype I-A NA NA COG2254 APE1231 and BH0336
    Subtype I-B
    cas4 Subtype I-A cas4 and csa1 NA COG1468 APE1239 and BH0340
    Subtype I-B
    Subtype I-C
    Subtype I-D
    Subtype II-
    B
    cas5 Subtype I-A cas5a, cas5d, 3KG4 COG1688 APE1234, BH0337,
    Subtype I-B cas5e, cas5h, (RAMP) devS and ygcI
    Subtype I-C cas5p, cas5t
    Subtype I-E and cmx5
    cas6 Subtype I-A cas6 and cmx6 3I4H COG1583 and PF1131 and slr7014
    Subtype I-B COG5551
    Subtype I-D (RAMP)
    Subtype III-A
    Subtype
    III-B
    cas6e Subtype I-E cse3 1WJ9 (RAMP) ygcH
    cas6f Subtype I-F csy4 2XLJ (RAMP) y1727
    cas7 Subtype I-A csa2, csd2, NA COG1857 and devR and ygcJ
    Subtype I-B cse4, csh2, COG3649
    Subtype I-C csp1 and cst2 (RAMP)
    Subtype I-E
    cas8a1 Subtype I- cmx1, cst1, NA BH0338-like LA3191§§ and
    A‡‡ csx8, csx13 PG2018§§
    and CXXC-
    CXXC
    cas8a2 Subtype I- csa4 and csx9 NA PH0918 AF0070, AF1873,
    A‡‡ MJ0385, PF0637,
    PH0918 and SSO1401
    cas8b Subtype I- csh1 and NA BH0338-like MTH1090 and
    B‡‡ TM1802 TM1802
    cas8c Subtype I- csd1 and csp2 NA BH0338-like BH0338
    C‡‡
    cas9 Type II‡‡ csn1 and csx12 NA COG3513 FTN_0757 and
    SPy1046
    cas10 Type III‡‡ cmr2, csm1 NA COG1353 MTH326, Rv2823c§§
    and csx111 and TM1794§§
    cas10d Subtype I- csc3 NA COG1353 slr7011
    D‡‡
    csy1 Subtype I- csy1 NA y1724-like y1724
    F‡‡
    csy2 Subtype I-F csy2 NA (RAMP) y1725
    csy3 Subtype I-F csy3 NA (RAMP) y1726
    cse1 Subtype I- cse1 NA YgcL-like ygcL
    E‡‡
    cse2 Subtype I-E cse2 2ZCA YgcK-like ygcK
    csc1 Subtype I-D csc1 NA alr1563-like alr1563
    (RAMP)
    csc2 Subtype I-D csc1 and csc2 NA COG1337 slr7012
    (RAMP)
    csa5 Subtype I-A csa5 NA AF1870 AF1870, MJ0380,
    PF0643 and SSO1398
    csn2 Subtype II- csn2 NA SPy1049-like SPy1049
    A
    csm2 Subtype III- csm2 NA COG1421 MTH1081 and
    A‡‡ SERP2460
    csm3 Subtype III- csc2 and csm3 NA COG1337 MTH1080 and
    A (RAMP) SERP2459
    csm4 Subtype III- csm4 NA COG1567 MTH1079 and
    A (RAMP) SERP2458
    csm5 Subtype III- csm5 NA COG1332 MTH1078 and
    A (RAMP) SERP2457
    csm6 Subtype III- APE2256 and 2WTE COG1517 APE2256 and
    A csm6 SSO1445
    cmr1 Subtype III- cmr1 NA COG1367 PF1130
    B (RAMP)
    cmr3 Subtype III- cmr3 NA COG1769 PF1128
    B (RAMP)
    cmr4 Subtype III- cmr4 NA COG1336 PF1126
    B (RAMP)
    cmr5 Subtype III- cmr5 2ZOP and 2OEB COG3337 MTH324 and PF1125
    B‡‡
    cmr6 Subtype III- cmr6 NA COG1604 PF1124
    B (RAMP)
    csb1 Subtype I-U GSU0053 NA (RAMP) Balac_1306 and
    GSU0053
    csb2 Subtype I- NA NA (RAMP) Balac_1305 and
    U§§ GSU0054
    csb3 Subtype I-U NA NA (RAMP) Balac_1303§§
    csx17 Subtype I-U NA NA NA Btus_2683
    csx14 Subtype I-U NA NA NA GSU0052
    csx10 Subtype I-U csx10 NA (RAMP) Caur_2274
    csx16 Subtype III- VVA1548 NA NA VVA1548
    U
    csaX Subtype III- csaX NA NA SSO1438
    U
    csx3 Subtype III- csx3 NA NA AF1864
    U
    csx1 Subtype III- csa3, csx1, 1XMX and 2171 COG1517 and MJ1666, NE0113,
    U csx2, DXTHG, COG4006 PF1127 andTM1812
    NE0113 and
    TIGR02710
    csx15 Unknown NA NA TTE2665 TTE2665
    csf1 Type U csf1 NA NA AFE_1038
    csf2 Type U csf2 NA (RAMP) AFE_1039
    csf3 Type U csf3 NA (RAMP) AFE_1040
    csf4 Type U csf4 NA NA AFE_1037
  • IV. Functional Analysis of Candidate Molecules
  • Candidate Cas9 molecules, candidate gRNA molecules, candidate Cas9 molecule/gRNA molecule complexes, can be evaluated by art-known methods or as described herein. For example, exemplary methods for evaluating the endonuclease activity of Cas9 molecule are described, e.g., in Jinek et al., SCIENCE 2012, 337(6096):816-821.
  • Binding and Cleavage Assay: Testing the Endonuclease Activity of Cas9 Molecule
  • The ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in a plasmid cleavage assay. In this assay, synthetic or in vitro-transcribed gRNA molecule is pre-annealed prior to the reaction by heating to 95° C. and slowly cooling down to room temperature. Native or restriction digest-linearized plasmid DNA (300 ng (˜8 nM)) is incubated for 60 min at 37° C. with purified Cas9 protein molecule (50-500 nM) and gRNA (50-500 nM, 1:1) in a Cas9 plasmid cleavage buffer (20 mM HEPES pH 7.5, 150 mM KCl, 0.5 mM DTT, 0.1 mM EDTA) with or without 10 mM MgCl2. The reactions are stopped with 5×DNA loading buffer (30% glycerol, 1.2% SDS, 250 mM EDTA), resolved by a 0.8 or 1% agarose gel electrophoresis and visualized by ethidium bromide staining. The resulting cleavage products indicate whether the Cas9 molecule cleaves both DNA strands, or only one of the two strands. For example, linear DNA products indicate the cleavage of both DNA strands. Nicked open circular products indicate that only one of the two strands is cleaved.
  • Alternatively, the ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in an oligonucleotide DNA cleavage assay. In this assay, DNA oligonucleotides (10 pmol) are radiolabeled by incubating with 5 units T4 polynucleotide kinase and ˜3-6 pmol (˜20-40 mCi) [γ-32P]-ATP in 1×T4 polynucleotide kinase reaction buffer at 37° C. for 30 min, in a 50 μL reaction. After heat inactivation (65° C. for 20 min), reactions are purified through a column to remove unincorporated label. Duplex substrates (100 nM) are generated by annealing labeled oligonucleotides with equimolar amounts of unlabeled complementary oligonucleotide at 95° C. for 3 min, followed by slow cooling to room temperature. For cleavage assays, gRNA molecules are annealed by heating to 95° C. for 30 s, followed by slow cooling to room temperature. Cas9 (500 nM final concentration) is pre-incubated with the annealed gRNA molecules (500 nM) in cleavage assay buffer (20 mM HEPES pH 7.5, 100 mM KCl, 5 mM MgCl2, 1 mM DTT, 5% glycerol) in a total volume of 9 μl. Reactions are initiated by the addition of 1 μl target DNA (10 nM) and incubated for 1 h at 37° C. Reactions are quenched by the addition of 20 μl of loading dye (5 mM EDTA, 0.025% SDS, 5% glycerol in formamide) and heated to 95° C. for 5 min. Cleavage products are resolved on 12% denaturing polyacrylamide gels containing 7 M urea and visualized by phosphorimaging. The resulting cleavage products indicate that whether the complementary strand, the non-complementary strand, or both, are cleaved.
  • One or both of these assays can be used to evaluate the suitability of a candidate gRNA molecule or candidate Cas9 molecule.
  • Binding Assay: Testing the Binding of Cas9 Molecule to Target DNA
  • Exemplary methods for evaluating the binding of Cas9 molecule to target DNA are described, e.g., in Jinek et al., SCIENCE 2012; 337(6096):816-821.
  • For example, in an electrophoretic mobility shift assay, target DNA duplexes are formed by mixing of each strand (10 nmol) in deionized water, heating to 95° C. for 3 min and slow cooling to room temperature. All DNAs are purified on 8% native gels containing 1×TBE. DNA bands are visualized by UV shadowing, excised, and eluted by soaking gel pieces in DEPC-treated H2O. Eluted DNA is ethanol precipitated and dissolved in DEPC-treated H2O. DNA samples are 5′ end labeled with [7-32P]-ATP using T4 polynucleotide kinase for 30 min at 37° C. Polynucleotide kinase is heat denatured at 65° C. for 20 min, and unincorporated radiolabel is removed using a column. Binding assays are performed in buffer containing 20 mM HEPES pH 7.5, 100 mM KCl, 5 mM MgCl2, 1 mM DTT and 10% glycerol in a total volume of 10 μl. Cas9 protein molecule is programmed with equimolar amounts of pre-annealed gRNA molecule and titrated from 100 pM to 1 μM. Radiolabeled DNA is added to a final concentration of 20 pM. Samples are incubated for 1 h at 37° C. and resolved at 4° C. on an 8% native polyacrylamide gel containing 1×TBE and 5 mM MgCl2. Gels are dried and DNA visualized by phosphorimaging.
  • Differential Scanning Flourimetry (DSF)
  • The thermostability of Cas9-gRNA ribonucleoprotein (RNP) complexes can be measured via DSF. This technique measures the thermostability of a protein, which can increase under favorable conditions such as the addition of a binding RNA molecule, e.g., a gRNA.
  • The assay is performed using two different protocols, one to test the best stoichiometric ratio of gRNA:Cas9 protein and another to determine the best solution conditions for RNP formation.
  • To determine the best solution to form RNP complexes, a 2 uM solution of Cas9 in water+10×SYPRO Orange® (Life Techonologies cat #S-6650) and dispensed into a 384 well plate. An equimolar amount of gRNA diluted in solutions with varied pH and salt is then added. After incubating at room temperature for 10′ and brief centrifugation to remove any bubbles, a Bio-Rad CFX384™ Real-Time System C1000 Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20° C. to 90° C. with a 1° increase in temperature every 10 seconds.
  • The second assay consists of mixing various concentrations of gRNA with 2 uM Cas9 in optimal buffer from assay 1 above and incubating at RT for 10′ in a 384 well plate. An equal volume of optimal buffer+10×SYPRO Orange® (Life Techonologies cat #S-6650) is added and the plate sealed with Microseal® B adhesive (MSB-1001). Following brief centrifugation to remove any bubbles, a Bio-Rad CFX384™ Real-Time System C1000 Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20° C. to 90° C. with a 1° increase in temperature every 10 seconds.
  • V. Genome Editing Approaches
  • Mutations in the HBB gene may be corrected using one of the approaches discussed herein. In an embodiment, a mutation in the HBB gene is corrected by homology directed repair (HDR) using an exogenously provided template nucleic acid (see Section V.1). In another embodiment, a mutation in the HBB gene is corrected by homology directed repair without using an exogenously provided template nucleic acid (see Section V.1).
  • Also described herein are methods for targeted knockout of one or both alleles of the BCL11A gene using NHEJ (see Section V.2). In another embodiment, methods are provided for targeted knockdown of the BCL11A gene (see Section V.3).
  • V.1 HDR Repair and Template Nucleic Acids
  • As described herein, nuclease-induced homology directed repair (HDR) can be used to alter a target sequence and correct (e.g., repair or edit) a mutation in the genome. While not wishing to be bound by theory, it is believed that alteration of the target sequence occurs by homology-directed repair (HDR) with an exogenously provided donor template or template nucleic acid. For example, the donor template or the template nucleic acid provides for alteration of the target sequence. It is contemplated that a plasmid donor can be used as a template for homologous recombination. It is further contemplated that a single stranded donor template can be used as a template for alteration of the target sequence by alternate methods of homology directed repair (e.g., single strand annealing) between the target sequence and the donor template. Donor template-effected alteration of a target sequence depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a double strand break or two single strand breaks. As described herein, nuclease-induced homology directed repair (HDR) can be used to alter a target sequence and correct (e.g., repair or edit) a mutation in the genome without the use of an exogenously provided donor template or template nucleic acid. While not wishing to be bound by theory, it is believed that alteration of the target sequence occurs by homology-directed repair (HDR) with endogenous genomic donor sequence. For example, the endogenous genomic donor sequence provides for alteration of the target sequence. It is contemplated that in an embodiment the endogenous genomic donor sequence is located on the same chromosome as the target sequence. It is further contemplated that in another embodiment the endogenous genomic donor sequence is located on a different chromosome from the target sequence. In an embodiment, the endogenous genomic donor sequence comprises one or more nucleotides derived from the HBD gene. Alteration of a target sequence by endogenous genomic donor sequence depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a double strand break or two single strand breaks.
  • Mutations that can be corrected by HDR using a template nucleic acid, or using endogenous genomic donor sequence, include point mutations. In an embodiment, a point mutation can be corrected by either a single double-strand break or two single strand breaks. In an embodiment, a point mutation can be corrected by (1) a single double-strand break, (2) two single strand breaks, (3) two double stranded breaks with a break occurring on each side of the target position, (4) one double stranded break and two single strand breaks with the double strand break and two single strand breaks occurring on each side of the target position (5) four single stranded breaks with a pair of single stranded breaks occurring on each side of the target position, or (6) one single stranded break.
  • In an embodiment where a single-stranded template nucleic acid is used, the target position can be altered by alternative HDR.
  • Donor template-effected alteration of a target position depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a nick, a double strand break, or two single strand breaks, e.g., one on each strand of the target nucleic acid. After introduction of the breaks on the target nucleic acid, resection occurs at the break ends resulting in single stranded overhanging DNA regions.
  • In canonical HDR, a double-stranded donor template is introduced, comprising homologous sequence to the target nucleic acid that will either be directly incorporated into the target nucleic acid or used as a template to correct the sequence of the target nucleic acid. After resection at the break, repair can progress by different pathways, e.g., by the double Holliday junction model (or double strand break repair, DSBR, pathway) or the synthesis-dependent strand annealing (SDSA) pathway. In the double Holliday junction model, strand invasion by the two single stranded overhangs of the target nucleic acid to the homologous sequences in the donor template occurs, resulting in the formation of an intermediate with two Holliday junctions. The junctions migrate as new DNA is synthesized from the ends of the invading strand to fill the gap resulting from the resection. The end of the newly synthesized DNA is ligated to the resected end, and the junctions are resolved, resulting in the correction of the target nucleic acid, e.g., incorporation of the correct sequence of the donor template at the corresponding target position. Crossover with the donor template may occur upon resolution of the junctions. In the SDSA pathway, only one single stranded overhang invades the donor template and new DNA is synthesized from the end of the invading strand to fill the gap resulting from resection. The newly synthesized DNA then anneals to the remaining single stranded overhang, new DNA is synthesized to fill in the gap, and the strands are ligated to produce the corrected DNA duplex.
  • In alternative HDR, a single strand donor template, e.g., template nucleic acid, is introduced. A nick, single strand break, or double strand break at the target nucleic acid, for altering a desired target position, is mediated by a Cas9 molecule, e.g., described herein, and resection at the break occurs to reveal single stranded overhangs. Incorporation of the sequence of the template nucleic acid to correct or alter the target position of the target nucleic acid typically occurs by the SDSA pathway, as described above.
  • Methods of promoting HDR pathways, e.g., canonical HDR or alt-HDR, are described herein in Section VI.
  • Additional details on template nucleic acids are provided in Section IV entitled “Template nucleic acids” in International Application PCT/US2014/057905.
  • Mutations in the HBB gene that can be corrected (e.g., altered) by HDR with a template nucleic acid or with endogenous genomic donor sequence include, e.g., point mutation at E6, e.g., E6V.
  • Double Strand Break Mediated Correction
  • In an embodiment, double strand cleavage is effected by a Cas9 molecule having cleavage activity associated with an HNH-like domain and cleavage activity associated with a RuvC-like domain, e.g., an N-terminal RuvC-like domain, e.g., a wild type Cas9. Such embodiments require only a single gRNA.
  • Single Strand Break Mediated Correction
  • In some embodiments, one single strand break, or nick, is effected by a Cas9 molecule having nickase activity, e.g., a Cas9 nickase as described herein. A nicked target nucleic acid can be a substrate for alt-HDR.
  • In other embodiments, two single strand breaks, or nicks, are effected by a Cas9 molecule having nickase activity, e.g., cleavage activity associated with an HNH-like domain or cleavage activity associated with an N-terminal RuvC-like domain. Such embodiments usually require two gRNAs, one for placement of each single strand break. In an embodiment, the Cas9 molecule having nickase activity cleaves the strand to which the gRNA hybridizes, but not the strand that is complementary to the strand to which the gRNA hybridizes. In an embodiment, the Cas9 molecule having nickase activity does not cleave the strand to which the gRNA hybridizes, but rather cleaves the strand that is complementary to the strand to which the gRNA hybridizes.
  • In an embodiment, the nickase has HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation. D10A inactivates RuvC; therefore, the Cas9 nickase has (only) HNH activity and will cut on the strand to which the gRNA hybridizes (e.g., the complementary strand, which does not have the NGG PAM on it). In other embodiments, a Cas9 molecule having an H840, e.g., an H840A, mutation can be used as a nickase. H840A inactivates HNH; therefore, the Cas9 nickase has (only) RuvC activity and cuts on the non-complementary strand (e.g., the strand that has the NGG PAM and whose sequence is identical to the gRNA). In other embodiments, a Cas9 molecule having an N863 mutation, e.g., the N863A mutation, mutation can be used as a nickase. N863A inactivates HNH therefore the Cas9 nickase has (only) RuvC activity and cuts on the non-complementary strand (the strand that has the NGG PAM and whose sequence is identical to the gRNA).
  • In an embodiment, in which a nickase and two gRNAs are used to position two single strand nicks, one nick is on the + strand and one nick is on the − strand of the target nucleic acid. The PAMs can be outwardly facing. The gRNAs can be selected such that the gRNAs are separated by, from about 0-50, 0-100, or 0-200 nucleotides. In an embodiment, there is no overlap between the target sequences that are complementary to the targeting domains of the two gRNAs. In an embodiment, the gRNAs do not overlap and are separated by as much as 50, 100, or 200 nucleotides. In an embodiment, the use of two gRNAs can increase specificity, e.g., by decreasing off-target binding (Ran et al., Cell 2013; 154(6):1380-1389).
  • In an embodiment, a single nick can be used to induce HDR, e.g., alt-HDR. It is contemplated herein that a single nick can be used to increase the ratio of HR to NHEJ at a given cleavage site. In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • Placement of Double Strand or Single Strand Breaks Relative to the Target Position
  • The double strand break or single strand break in one of the strands should be sufficiently close to target position such that an alteration is produced in the desired region, e.g., correction of a mutation occurs. In an embodiment, the distance is not more than 50, 100, 200, 300, 350 or 400 nucleotides. While not wishing to be bound by theory, in some embodiments, it is believed that the break should be sufficiently close to target position such that the target position is within the region that is subject to exonuclease-mediated removal during end resection. If the distance between the target position and a break is too great, the mutation or other sequence desired to be altered may not be included in the end resection and, therefore, may not be corrected, as donor sequence, either exogenously provided donor sequence or endogenous genomic donor sequence, in some embodiments is only used to correct sequence within the end resection region.
  • In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150 or 200 nucleotides of the region desired to be altered, e.g., a mutation. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of the region desired to be altered, e.g., a mutation. In some embodiments, a break is positioned within the region desired to be altered, e.g., within a region defined by at least two mutant nucleotides. In some embodiments, a break is positioned immediately adjacent to the region desired to be altered, e.g., immediately upstream or downstream of a mutation. In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, the targeting domains bind configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150 or 200 nucleotides of a target position. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the desired region. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • In an embodiment, in which a gRNA (unimolecular (or chimeric) or modular gRNA) and Cas9 nuclease induce a double strand break for the purpose of inducing HDR-mediated correction, the cleavage site is between 0-200 bp (e.g., 0-175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position. In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
  • In embodiments, one can promote HDR by using nickases to generate a break with overhangs. While not wishing to be bound by theory, the single stranded nature of the overhangs can enhance the cell's likelihood of repairing the break by HDR as opposed to, e.g., NHEJ. Specifically, in some embodiments, HDR is promoted by selecting a first gRNA that targets a first nickase to a first target sequence, and a second gRNA that targets a second nickase to a second target sequence which is on the opposite DNA strand from the first target sequence and offset from the first nick.
  • In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • Placement of a First Break and a Second Break Relative to Each Other
  • In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • When two or more gRNAs are used to position two or more cleavage events, e.g., double strand or single strand breaks, in a target nucleic acid, it is contemplated that the two or more cleavage events may be made by the same or different Cas9 proteins. For example, when two gRNAs are used to position two double stranded breaks, a single Cas9 nuclease may be used to create both double stranded breaks. When two or more gRNAs are used to position two or more single stranded breaks (nicks), a single Cas9 nickase may be used to create the two or more nicks. When two or more gRNAs are used to position at least one double stranded break and at least one single stranded break, two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double stranded versus a single stranded break at the desired position in the target nucleic acid.
  • In some embodiments, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecules are complementary to opposite strands of the target nucleic acid molecule. In some embodiments, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • In certain embodiments, two gRNA are selected to direct Cas9-mediated cleavage at two positions that are a preselected distance from each other. In embodiments, the two points of cleavage are on opposite strands of the target nucleic acid. In some embodiments, the two cleavage points form a blunt ended break, and in other embodiments, they are offset so that the DNA ends comprise one or two overhangs (e.g., one or more 5′ overhangs and/or one or more 3′ overhangs). In some embodiments, each cleavage event is a nick. In embodiments, the nicks are close enough together that they form a break that is recognized by the double stranded break machinery (as opposed to being recognized by, e.g., the SSBr machinery). In embodiments, the nicks are far enough apart that they create an overhang that is a substrate for HDR, i.e., the placement of the breaks mimics a DNA substrate that has experienced some resection. For instance, in some embodiments the nicks are spaced to create an overhang that is a substrate for processive resection. In some embodiments, the two breaks are spaced within 25-65 nucleotides of each other. The two breaks may be, e.g., about 25, 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. The two breaks may be, e.g., at least about 25, 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. The two breaks may be, e.g., at most about 30, 35, 40, 45, 50, 55, 60 or 65 nucleotides of each other. In embodiments, the two breaks are about 25-30, 30-35, 35-40, 40-45, 45-50, 50-55, 55-60, or 60-65 nucleotides of each other.
  • In some embodiments, the break that mimics a resected break comprises a 3′ overhang (e.g., generated by a DSB and a nick, where the nick leaves a 3′ overhang), a 5′ overhang (e.g., generated by a DSB and a nick, where the nick leaves a 5′ overhang), a 3′ and a 5′ overhang (e.g., generated by three cuts), two 3′ overhangs (e.g., generated by two nicks that are offset from each other), or two 5′ overhangs (e.g., generated by two nicks that are offset from each other).
  • In an embodiment, in which two gRNAs (independently, unimolecular (or chimeric) or modular gRNA) complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing HDR-mediated correction, the closer nick is between 0-200 bp (e.g., 0-175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position and the two nicks will ideally be within 25-65 bp of each other (e.g., 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 30 to 55, 30 to 50, 30 to 45, 30 to 40, 30 to 35, 35 to 55, 35 to 50, 35 to 45, 35 to 40, 40 to 55, 40 to 50, 40 to 45 bp, 45 to 50 bp, 50 to 55 bp, 55 to 60 bp, 60 to 65 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20, 10 or 5 bp away from each other). In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
  • In one embodiment, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single stranded breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single stranded breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are, in embodiments, within 25-65 bp of each other (e.g., between 25 to 55, 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50, 45 to 50, 35 to 45, 40 to 45 bp, 45 to 50 bp, 50 to 55 bp, 55 to 60 bp, or 60 to 65 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp).
  • When two gRNAs are used to target Cas9 molecules to breaks, different combinations of Cas9 molecules are envisioned. In some embodiments, a first gRNA is used to target a first Cas9 molecule to a first target position, and a second gRNA is used to target a second Cas9 molecule to a second target position. In some embodiments, the first Cas9 molecule creates a nick on the first strand of the target nucleic acid, and the second Cas9 molecule creates a nick on the opposite strand, resulting in a double stranded break (e.g., a blunt ended cut or a cut with overhangs).
  • Different combinations of nickases can be chosen to target one single stranded break to one strand and a second single stranded break to the opposite strand. When choosing a combination, one can take into account that there are nickases having one active RuvC-like domain, and nickases having one active HNH domain. In an embodiment, a RuvC-like domain cleaves the non-complementary strand of the target nucleic acid molecule. In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. Generally, if both Cas9 molecules have the same active domain (e.g., both have an active RuvC domain or both have an active HNH domain), one will choose two gRNAs that bind to opposite strands of the target. In more detail, in some embodiments, a first gRNA is complementary with a first strand of the target nucleic acid and binds a nickase having an active RuvC-like domain and causes that nickase to cleave the strand that is non-complementary to that first gRNA, i.e., a second strand of the target nucleic acid; and a second gRNA is complementary with a second strand of the target nucleic acid and binds a nickase having an active RuvC-like domain and causes that nickase to cleave the strand that is non-complementary to that second gRNA, i.e., the first strand of the target nucleic acid. Conversely, in some embodiments, a first gRNA is complementary with a first strand of the target nucleic acid and binds a nickase having an active HNH domain and causes that nickase to cleave the strand that is complementary to that first gRNA, i.e., a first strand of the target nucleic acid; and a second gRNA is complementary with a second strand of the target nucleic acid and binds a nickase having an active HNH domain and causes that nickase to cleave the strand that is complementary to that second gRNA, i.e., the second strand of the target nucleic acid. In another arrangement, if one Cas9 molecule has an active RuvC-like domain and the other Cas9 molecule has an active HNH domain, the gRNAs for both Cas9 molecules can be complementary to the same strand of the target nucleic acid, so that the Cas9 molecule with the active RuvC-like domain will cleave the non-complementary strand and the Cas9 molecule with the HNH domain will cleave the complementary strand, resulting in a double stranded break.
  • Length of the Homology Arms of the Donor Template
  • The homology arm should extend at least as far as the region in which end resection may occur, e.g., in order to allow the resected single stranded overhang to find a complementary region within the donor template. The overall length could be limited by parameters such as plasmid size or viral packaging limits. In an embodiment, a homology arm does not extend into repeated elements, e.g., Alu repeats or LINE repeats.
  • Exemplary homology arm lengths include at least 50, 100, 250, 500, 750, 1000, 2000, 3000, 4000, or 5000 nucleotides. In some embodiments, the homology arm length is 50-100, 100-250, 250-500, 500-750, 750-1000, 1000-2000, 2000-3000, 3000-4000, or 4000-5000 nucleotides.
  • Target position, as used herein, refers to a site on a target nucleic acid (e.g., the chromosome) that is modified by a Cas9 molecule-dependent process. For example, the target position can be a modified Cas9 molecule cleavage of the target nucleic acid and template nucleic acid directed modification, e.g., correction, of the target position. In an embodiment, a target position can be a site between two nucleotides, e.g., adjacent nucleotides, on the target nucleic acid into which one or more nucleotides is added. The target position may comprise one or more nucleotides that are altered, e.g., corrected, by a template nucleic acid. In an embodiment, the target position is within a target sequence (e.g., the sequence to which the gRNA binds). In an embodiment, a target position is upstream or downstream of a target sequence (e.g., the sequence to which the gRNA binds).
  • A template nucleic acid, as that term is used herein, refers to a nucleic acid sequence which can be used in conjunction with a Cas9 molecule and a gRNA molecule to alter the structure of a target position. In an embodiment, the target nucleic acid is modified to have the some or all of the sequence of the template nucleic acid, typically at or near cleavage site(s). In an embodiment, the template nucleic acid is single stranded. In an alternate embodiment, the template nucleic acid is double stranded. In an embodiment, the template nucleic acid is DNA, e.g., double stranded DNA. In an alternate embodiment, the template nucleic acid is single stranded DNA. In an embodiment, the template nucleic acid is encoded on the same vector backbone, e.g. AAV genome, plasmid DNA, as the Cas9 and gRNA. In an embodiment, the template nucleic acid is excised from a vector backbone in vivo, e.g., it is flanked by gRNA recognition sequences. In an embodiment, the template nucleic acid comprises endogenous genomic sequence
  • In an embodiment, the template nucleic acid alters the structure of the target position by participating in a homology directed repair event. In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.
  • Typically, the template sequence undergoes a breakage mediated or catalyzed recombination with the target sequence. In an embodiment, the template nucleic acid includes sequence that corresponds to a site on the target sequence that is cleaved by an eaCas9 mediated cleavage event. In an embodiment, the template nucleic acid includes sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas9 mediated event, and a second site on the target sequence that is cleaved in a second Cas9 mediated event.
  • In an embodiment, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation.
  • In other embodiments, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5′ or 3′ non-translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element.
  • A template nucleic acid having homology with a target position in the HBB gene can be used to alter the structure of a target sequence. The template sequence can be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide.
  • A template nucleic acid typically comprises the following components:
  • [5′ homology arm]-[replacement sequence]-[3′ homology arm].
  • The homology arms provide for recombination into the chromosome, thus replacing the undesired element, e.g., a mutation or signature, with the replacement sequence. In an embodiment, the homology arms flank the most distal cleavage sites.
  • In an embodiment, the 3′ end of the 5′ homology arm is the position next to the 5′ end of the replacement sequence. In an embodiment, the 5′ homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides 5′ from the 5′ end of the replacement sequence.
  • In an embodiment, the 5′ end of the 3′ homology arm is the position next to the 3′ end of the replacement sequence. In an embodiment, the 3′ homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides 3′ from the 3′ end of the replacement sequence.
  • In an embodiment, to correct a mutation, the homology arms, e.g., the 5′ and 3′ homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1000 bp of sequence on either side of the mutation).
  • It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats or LINE elements. For example, a 5′ homology arm may be shortened to avoid a sequence repeat element. In other embodiments, a 3′ homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5′ and the 3′ homology arms may be shortened to avoid including certain sequence repeat elements.
  • It is contemplated herein that template nucleic acids for correcting a mutation may be designed for use as a single-stranded oligonucleotide, e.g., a single-stranded oligodeoxynucleotide (ssODN). When using a ssODN, 5′ and 3′ homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made. In some embodiments, a longer homology arm is made by a method other than chemical synthesis, e.g., by denaturing a long double stranded nucleic acid and purifying one of the strands, e.g., by affinity for a strand-specific sequence anchored to a solid substrate.
  • While not wishing to be bound by theory, in some embodiments alt-HDR proceeds more efficiently when the template nucleic acid has extended homology 5′ to the nick (i.e., in the 5′ direction of the nicked strand). Accordingly, in some embodiments, the template nucleic acid has a longer homology arm and a shorter homology arm, wherein the longer homology arm can anneal 5′ of the nick. In some embodiments, the arm that can anneal 5′ to the nick is at least 25, 50, 75, 100, 125, 150, 175, or 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 3000, 4000, or 5000 nucleotides from the nick or the 5′ or 3′ end of the replacement sequence. In some embodiments, the arm that can anneal 5′ to the nick is at least 10%, 20%, 30%, 40%, or 50% longer than the arm that can anneal 3′ to the nick. In some embodiments, the arm that can anneal 5′ to the nick is at least 2×, 3×, 4×, or 5× longer than the arm that can anneal 3′ to the nick. Depending on whether a ssDNA template can anneal to the intact strand or the nicked strand, the homology arm that anneals 5′ to the nick may be at the 5′ end of the ssDNA template or the 3′ end of the ssDNA template, respectively.
  • Similarly, in some embodiments, the template nucleic acid has a 5′ homology arm, a replacement sequence, and a 3′ homology arm, such that the template nucleic acid has extended homology to the 5′ of the nick. For example, the 5′ homology arm and 3′ homology arm may be substantially the same length, but the replacement sequence may extend farther 5′ of the nick than 3′ of the nick. In some embodiments, the replacement sequence extends at least 10%, 20%, 30%, 40%, 50%, 2×, 3×, 4×, or 5× further to the 5′ end of the nick than the 3′ end of the nick. While not wishing to be bound by theory, in some embodiments alt-HDR proceeds more efficiently when the template nucleic acid is centered on the nick. Accordingly, in some embodiments, the template nucleic acid has two homology arms that are essentially the same size. For instance, the first homology arm of a template nucleic acid may have a length that is within 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1% of the second homology arm of the template nucleic acid.
  • Similarly, in some embodiments, the template nucleic acid has a 5′ homology arm, a replacement sequence, and a 3′ homology arm, such that the template nucleic acid extends substantially the same distance on either side of the nick. For example, the homology arms may have different lengths, but the replacement sequence may be selected to compensate for this. For example, the replacement sequence may extend further 5′ from the nick than it does 3′ of the nick, but the homology arm 5′ of the nick is shorter than the homology arm 3′ of the nick, to compensate. The converse is also possible, e.g., that the replacement sequence may extend further 3′ from the nick than it does 5′ of the nick, but the homology arm 3′ of the nick is shorter than the homology arm 5′ of the nick, to compensate.
  • Exemplary Arrangements of Linear Nucleic Acid Template Systems
  • In an embodiment, the nucleic acid template system is double stranded. In an embodiment, the nucleic acid template system is single stranded. In an embodiment, the nucleic acid template system comprises a single stranded portion and a double stranded portion. In an embodiment, the template nucleic acid comprises about 50 to 100, e.g., 55 to 95, 60 to 90, 65 to 85, or 70 to 80, base pairs, homology on either side of the nick and/or replacement sequence. In an embodiment, the template nucleic acid comprises about 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, or 100 base pairs homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequences.
  • In an embodiment, the template nucleic acid comprises about 150 to 200, e.g., 155 to 195, 160 to 190, 165 to 185, or 170 to 180, base pairs homology 3′ of the nick and/or replacement sequence. In an embodiment, the template nucleic acid comprises about 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, or 200 base pairs homology 3′ of the nick or replacement sequence. In an embodiment, the template nucleic acid comprises less than about 100, 90, 80, 70, 60, 50, 40, 30, 20, 15, or 10 base pairs homology 5′ of the nick or replacement sequence.
  • In an embodiment, the template nucleic acid comprises about 150 to 200, e.g., 155 to 195, 160 to 190, 165 to 185, or 170 to 180, base pairs homology 5′ of the nick and/or replacement sequence. In an embodiment, the template nucleic acid comprises about 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, or 200 base pairs homology 5′ of the nick or replacement sequence. In an embodiment, the template nucleic acid comprises less than about 100, 90, 80, 70, 60, 50, 40, 30, 20, 15, or 10 base pairs homology 3′ of the nick or replacement sequence.
  • Exemplary Template Nucleic Acids
  • In an embodiment, the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In some embodiments, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In other embodiments, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In other embodiments, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
  • The template nucleic acid may comprise a replacement sequence. In some embodiments, the template nucleic acid comprises a 5′ homology arm. In other embodiments, the template nucleic acid comprises a 3′ homology arm.
  • In embodiments, the template nucleic acid is linear double stranded DNA. The length may be, e.g., about 150-200 base pairs, e.g., about 150, 160, 170, 180, 190, or 200 base pairs. The length may be, e.g., at least 150, 160, 170, 180, 190, or 200 base pairs. In some embodiments, the length is no greater than 150, 160, 170, 180, 190, or 200 base pairs. In some embodiments, a double stranded template nucleic acid has a length of about 160 base pairs, e.g., about 155-165, 150-170, 140-180, 130-190, 120-200, 110-210, 100-220, 90-230, or 80-240 base pairs.
  • The template nucleic acid can be linear single stranded DNA. In embodiments, the template nucleic acid is (i) linear single stranded DNA that can anneal to the nicked strand of the target nucleic acid, (ii) linear single stranded DNA that can anneal to the intact strand of the target nucleic acid, (iii) linear single stranded DNA that can anneal to the transcribed strand of the target nucleic acid, (iv) linear single stranded DNA that can anneal to the non-transcribed strand of the target nucleic acid, or more than one of the preceding. The length may be, e.g., about 150-200 nucleotides, e.g., about 150, 160, 170, 180, 190, or 200 nucleotides. The length may be, e.g., at least 150, 160, 170, 180, 190, or 200 nucleotides. In some embodiments, the length is no greater than 150, 160, 170, 180, 190, or 200 nucleotides. In some embodiments, a single stranded template nucleic acid has a length of about 160 nucleotides, e.g., about 155-165, 150-170, 140-180, 130-190, 120-200, 110-210, 100-220, 90-230, or 80-240 nucleotides.
  • In some embodiments, the template nucleic acid is circular double stranded DNA, e.g., a plasmid. In some embodiments, the template nucleic acid comprises about 500 to 1000 base pairs of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises no more than 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence.
  • In some embodiments, the template nucleic acid is an adenovirus vector, e.g., an AAV vector, e.g., a ssDNA molecule of a length and sequence that allows it to be packaged in an AAV capsid. The vector may be, e.g., less than 5 kb and may contain an ITR sequence that promotes packaging into the capsid. The vector may be integration-deficient. In some embodiments, the template nucleic acid comprises about 150 to 1000 nucleotides of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at most 100, 150, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence.
  • In some embodiments, the template nucleic acid is a lentiviral vector, e.g., an IDLV (integration deficiency lentivirus). In some embodiments, the template nucleic acid comprises about 500 to 1000 base pairs of homology on either side of the replacement sequence and/or the nick. In some embodiments, the template nucleic acid comprises about 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises at least 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence. In some embodiments, the template nucleic acid comprises no more than 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 base pairs of homology 5′ of the nick or replacement sequence, 3′ of the nick or replacement sequence, or both 5′ and 3′ of the nick or replacement sequence.
  • In many embodiments, the template nucleic acid comprises one or more mutations, e.g., silent mutations, that prevent Cas9 from recognizing and cleaving the template nucleic acid. The template nucleic acid may comprise, e.g., at least 1, 2, 3, 4, 5, 10, 20, or 30 silent mutations relative to the corresponding sequence in the genome of the cell to be altered. In embodiments, the template nucleic acid comprises at most 2, 3, 4, 5, 10, 20, 30, or 50 silent mutations relative to the corresponding sequence in the genome of the cell to be altered.
  • In an embodiment, the template nucleic acid alters the structure of the target position by participating in a homology directed repair event. In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.
  • Typically, the template sequence undergoes a breakage mediated or catalyzed recombination with the target sequence. In an embodiment, the template nucleic acid includes sequence that corresponds to a site on the target sequence that is cleaved by an eaCas9 mediated cleavage event. In an embodiment, the template nucleic acid includes sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas9 mediated event, and a second site on the target sequence that is cleaved in a second Cas9 mediated event.
  • In an embodiment, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation.
  • In other embodiments, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5′ or 3′ non-translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element. A template nucleic acid having homology with a target position can be used to alter the structure of a target sequence. The template sequence can be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide.
  • Exemplary template nucleic acids (also referred to herein as donor constructs) to correction a mutation, e.g., at E6, e.g., E6V, in the HBB gene, are provided.
  • Suitable sequence for the 5′ homology arm can be selected from (e.g., includes a portion of) or include the following sequence:
  • SEQ ID NO: 16257
    ATAGGAACTTGAATCAAGGAAATGATTTTAAAACGCAGTATTCTTAGTG
    GACTAGAGGAAAAAAATAATCTGAGCCAAGTAGAAGACCTTTTCCCCTC
    CTACCCCTACTTTCTAAGTCACAGAGGCTTTTTGTTCCCCCAGACACTC
    TTGCAGATTAGTCCAGGCAGAAACAGTTAGATGTCCCCAGTTAACCTCC
    TATTTGACACCACTGATTACCCCATTGATAGTCACACTTTGGGTTGTAA
    GTGACTTTTTATTTATTTGTATTTTTGACTGCATTAAGAGGTCTCTAGT
    TTTTTATCTCTTGTTTCCCAAAACCTAATAAGTAACTAATGCACAGAGC
    ACATTGATTTGTATTTATTCTATTTTTAGACATAATTTATTAGCATGCA
    TGAGCAAATTAAGAAAAACAACAACAAATGAATGCATATATATGTATAT
    GTATGTGTGTATATATACACACATATATATATATATTTTTTCTTTTCTT
    ACCAGAAGGTTTTAATCCAAATAAGGAGAAGATATGCTTAGAACCGAGG
    TAGAGTTTTCATCCATTCTGTCCTGTAAGTATTTTGCATATTCTGGAGA
    CGCAGGAAGAGATCCATCTACATATCCCAAAGCTGAATTATGGTAGACA
    AAACTCTTCCACTTTTAGTGCATCAACTTCTTATTTGTGTAATAAGAAA
    ATTGGGAAAACGATCTTCAATATGCTTACCAAGCTGTGATTCCAAATAT
    TACGTAAATACACTTGCAAAGGAGGATGTTTTTAGTAGCAATTTGTACT
    GATGGTATGGGGCCAAGAGATATATCTTAGAGGGAGGGCTGAGGGTTTG
    AAGTCCAACTCCTAAGCCAGTGCCAGAAGAGCCAAGGACAGGTACGGCT
    GTCATCACTTAGACCTCACCCTGTGGAGCCACACCCTAGGGTTGGCCAA
    TCTACTCCCAGGAGCAGGGAGGGCAGGAGCCAGGGCTGGGCATAAAAGT
    CAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACTGTGTT
    CACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCTG
    (5′H arm)
  • Suitable sequence for the 3′ homology arm can be selected from (e.g., includes a portion of) or include the following sequence:
  • SEQ ID NO: 16258
    GGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAA
    GTTGGTGGTGAGGCCCTGGGCAGGTTGGTATCAAGGTTACAAGACAGGT
    TTAAGGAGACCAATAGAAACTGGGCATGTGGAGACAGAGAAGACTCTTG
    GGTTTCTGATAGGCACTGACTCTCTCTGCCTATTGGTCTATTTTCCCAC
    CCTTAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCC
    TTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGA
    AGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCA
    CCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGT
    GACAAGCTGCACGTGGATCCTGAGAACTTCAGGGTGAGTCTATGGGACG
    CTTGATGTTTTCTTTCCCCTTCTTTTCTATGGTTAAGTTCATGTCATAG
    GAAGGGGATAAGTAACAGGGTACAGTTTAGAATGGGAAACAGACGAATG
    ATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAGTTTCTTTTATTTGC
    TGTTCATAACAATTGTTTTCTTTTGTTTAATTCTTGCTTTCTTTTTTTT
    TCTTCTCCGCAATTTTTACTATTATACTTAATGCCTTAACATTGTGTAT
    AACAAAAGGAAATATCTCTGAGATACATTAAGTAACTTAAAAAAAAACT
    TTACACAGTCTGCCTAGTACATTACTATTTGGAATATATGTGTGCTTAT
    TTGCATATTCATAATCTCCCTACTTTATTTTCTTTTATTTTTAATTGAT
    ACATAATCATTATACATATTTATGGGTTAAAGTGTAATGTTTTAATATG
    TGTACACATATTGACCAAATCAGGGTAATTTTGCATTTGTAATTTTAAA
    AAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCTAATA
    CTTTCCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATG
    CCTCTTTGCACCATTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGG
    CAATAGCAATATCTCTGCATATAAATATTTCTGCATATAAATTGTAACT
    G (3′H arm)
  • In an embodiment, the replacement sequence comprises or consists of an adenine (A) residue to correct the amino acid sequence to a glutamic acid (E) residue.
  • In an embodiment, to correct a mutation, e.g., at E6, e.g., E6V, in the HBB gene, the homology arms, e.g., the 5′ and 3′ homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1100 bp of sequence on either side of the mutation). The 5′ homology arm is shown as bold sequence, codon 6 is shown as underlined sequence, the inserted base to correct the mutation at E6, e.g., E6V, is shown as boxed sequence, and the 3′ homology arm is shown as no emphasis sequence.
  • ATAGGAACTTGAATCAAGGAAATGATTTTAAAACGCAGTATTCTTAGTGGACTA
    GAGGAAAAAAATAATCTGAGCCAAGTAGAAGACCTTTTCCCCTCCTACCCCTAC
    TTTCTAAGTCACAGAGGCTTTTTGTTCCCCCAGACACTCTTGCAGATTAGTCCA
    GGCAGAAACAGTTAGATGTCCCCAGTTAACCTCCTATTTGACACCACTGATTAC
    CCCATTGATAGTCACACTTTGGGTTGTAAGTGACTTTTTATTTATTTGTATTTTT
    GACTGCATTAAGAGGTCTCTAGTTTTTTATCTCTTGTTTCCCAAAACCTAATAA
    GTAACTAATGCACAGAGCACATTGATTTGTATTTATTCTATTTTTAGACATAATT
    TATTAGCATGCATGAGCAAATTAAGAAAAACAACAACAAATGAATGCATATATA
    TGTATATGTATGTGTGTATATATACACACATATATATATATATTTTTTCTTTTCT
    TACCAGAAGGTTTTAATCCAAATAAGGAGAAGATATGCTTAGAACCGAGGTAG
    AGTTTTCATCCATTCTGTCCTGTAAGTATTTTGCATATTCTGGAGACGCAGGAA
    GAGATCCATCTACATATCCCAAAGCTGAATTATGGTAGACAAAACTCTTCCACT
    TTTAGTGCATCAACTTCTTATTTGTGTAATAAGAAAATTGGGAAAACGATCTTC
    AATATGCTTACCAAGCTGTGATTCCAAATATTACGTAAATACACTTGCAAAGGA
    GGATGTTTTTAGTAGCAATTTGTACTGATGGTATGGGGCCAAGAGATATATCTT
    AGAGGGAGGGCTGAGGGTTTGAAGTCCAACTCCTAAGCCAGTGCCAGAAGAGC
    CAAGGACAGGTACGGCTGTCATCACTTAGACCTCACCCTGTGGAGCCACACCC
    TAGGGTTGGCCAATCTACTCCCAGGAGCAGGGAGGGCAGGAGCCAGGGCTGG
    GCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACT
    Figure US20230026726A1-20230126-C00001
    AGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTGGTGAG
    GCCCTGGGCAGGTTGGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAAA
    CTGGGCATGTGGAGACAGAGAAGACTCTTGGGTTTCTGATAGGCACTGACTCTCTCT
    GCCTATTGGTCTATTTTCCCACCCTTAGGCTGCTGGTGGTCTACCCTTGGACCCAGAG
    GTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAG
    GTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTG
    GACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCA
    CGTGGATCCTGAGAACTTCAGGGTGAGTCTATGGGACGCTTGATGTTTTCTTTCCCCT
    TCTTTTCTATGGTTAAGTTCATGTCATAGGAAGGGGATAAGTAACAGGGTACAGTTT
    AGAATGGGAAACAGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAG
    TTTCTTTTATTTGCTGTTCATAACAATTGTTTTCTTTTGTTTAATTCTTGCTTTCTTTTT
    TTTTCTTCTCCGCAATTTTTACTATTATACTTAATGCCTTAACATTGTGTATAACAAA
    AGGAAATATCTCTGAGATACATTAAGTAACTTAAAAAAAAACTTTACACAGTCTGCC
    TAGTACATTACTATTTGGAATATATGTGTGCTTATTTGCATATTCATAATCTCCCTAC
    TTTATTTTCTTTTATTTTTAATTGATACATAATCATTATACATATTTATGGGTTAAAGT
    GTAATGTTTTAATATGTGTACACATATTGACCAAATCAGGGTAATTTTGCATTTGTAA
    TTTTAAAAAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCTAATACTTT
    CCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATGCCTCTTTGCACCA
    TTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGGCAATAGCAATATCTCTGCATA
    TAAATATTTCTGCATATAAATTGTAACTG
    (Template Construct 1; SEQ ID NO: 16259)
  • As described below in Table 27, shorter homology arms, e.g., 5′ and/or 3′ homology arms may be used.
  • It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats, LINE elements. For example, a 5′ homology arm may be shortened to avoid a sequence repeat element. In another embodiment, a 3′ homology arm may be shortened to avoid a sequence repeat element. In an embodiment, both the 5′ and the 3′ homology arms may be shortened to avoid including certain sequence repeat elements.
  • It is contemplated herein that template nucleic acids for correcting a mutation may designed for use as a single-stranded oligonucleotide (ssODN). When using a ssODN, 5′ and 3′ homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made.
  • In an embodiment, an ssODN may be used to correct a mutation, e.g., E6V in the HBB gene. For example, the ssODN may include 50 bp 5′ and 3′ homology arms as shown below. The 5′ homology arm is shown as bold sequence, codon 6 is shown as underlined sequence, the inserted base to correct the E6V mutation is shown as boxed sequence, and the 3′ homology arm is shown as no emphasis sequence.
  • ACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCT
    Figure US20230026726A1-20230126-C00002
    GAAGT
    (Template Construct 2; SEQ ID NO: 16260)
  • Silent Mutations in Donor Construct
  • It is contemplated herein that Cas9 could potentially cleave donor constructs either prior to or following homology directed repair (e.g., homologous recombination), resulting in a possible non-homologous-end-joining event and further DNA sequence mutation at the chromosomal locus of interest. Therefore, to avoid cleavage of the donor sequence before and/or after Cas9-mediated homology directed repair, alternate versions of the donor sequence may be used where silent mutations are introduced. These silent mutations may disrupt Cas9 binding and cleavage, but not disrupt the amino acid sequence of the repaired gene. For example, mutations may include those made to a donor sequence to repair the HBB gene, the mutant form of which can cause Sickle Cell Disease. If gRNA HBB-6 with the 20-base target sequence CGUUACUGCCCUGUGGGGCA is used to insert a donor sequence including
  • (SEQ ID NO: 16297)
    Figure US20230026726A1-20230126-C00003
    TGGATGAAGT,

    where the italic A is the base being corrected and the bracketed bases are those that match the guide RNA, the donor sequence may be changed to
  • (SEQ ID NO: 16298)
    Figure US20230026726A1-20230126-C00004
    TGGATGAAGT,

    where the lowercase a has been changed from a G (lower case g in sequence ID xxx) at that position so that codon 15 still codes for the amino acid Arginine but the PAM sequence AGG has been modified to AGA to reduce or eliminate Cas9 cleavage at that locus.
  • Table 27 below provides exemplary template nucleic acids. In an embodiment, the template nucleic acid includes the 5′ homology arm and the 3′ homology arm of a row from Table 27. In another embodiment, a 5′ homology arm from the first column can be combined with a 3′ homology arm from Table 27. In each embodiment, a combination of the 5′ and 3′ homology arms include a replacement sequence, e.g., an adenine (A) residue.
  • TABLE 27
    5’ homology arm (the number of 3’ homology arm (the number of
    nucleotides from SEQ ID NO: 5’H, nucleotides from SEQ ID NO: 3’H,
    beginning at the 3’ end of SEQ ID Replacement beginning at the 5’ end of SEQ ID
    NO: 5’H) Sequence = A NO: 3’H)
    10 or more 10 or more
    20 or more 20 or more
    50 or more 50 or more
    100 or more 100 or more
    150 or more 150 or more
    200 or more 200 or more
    250 or more 250 or more
    300 or more 300 or more
    350 or more 350 or more
    400 or more 400 or more
    450 or more 450 or more
    500 or more 500 or more
    550 or more 550 or more
    600 or more 600 or more
    650 or more 650 or more
    700 or more 700 or more
    750 or more 750 or more
    800 or more 800 or more
    850 or more 850 or more
    900 or more 900 or more
    1000 or more 1000 or more
    1100 or more 1100 or more
    1200 or more 1200 or more
    1300 or more 1300 or more
    1400 or more 1400 or more
    1500 or more 1500 or more
    1600 or more 1600 or more
    1700 or more 1700 or more
    1800 or more 1800 or more
    1900 or more 1900 or more
    1200 or more 1200 or more
    At least 50 but not long enough to At least 50 but not long enough to
    include a repeated element. include a repeated element.
    At least 100 but not long enough to At least 100 but not long enough to
    include a repeated element. include a repeated element.
    At least 150 but not long enough to At least 150 but not long enough to
    include a repeated element. include a repeated element.
    5 to 100 nucleotides 5 to 100 nucleotides
    10 to 150 nucleotides 10 to 150 nucleotides
    20 to 150 nucleotides 20 to 150 nucleotides
    Template Construct No. 1
    Template Construct No. 2
  • V.2 NHEJ Approaches for Gene Targeting
  • As described herein, nuclease-induced non-homologous end-joining (NHEJ) can be used to target gene-specific knockouts. Nuclease-induced NHEJ can also be used to remove (e.g., delete) sequences in a gene of interest.
  • While not wishing to be bound by theory, it is believed that, in an embodiment, the genomic alterations associated with the methods described herein rely on nuclease-induced NHEJ and the error-prone nature of the NHEJ repair pathway. NHEJ repairs a double-strand break in the DNA by joining together the two ends; however, generally, the original sequence is restored only if two compatible ends, exactly as they were formed by the double-strand break, are perfectly ligated. The DNA ends of the double-strand break are frequently the subject of enzymatic processing, resulting in the addition or removal of nucleotides, at one or both strands, prior to rejoining of the ends. This results in the presence of insertion and/or deletion (indel) mutations in the DNA sequence at the site of the NHEJ repair. Two-thirds of these mutations typically alter the reading frame and, therefore, produce a non-functional protein. Additionally, mutations that maintain the reading frame, but which insert or delete a significant amount of sequence, can destroy functionality of the protein. This is locus dependent as mutations in critical functional domains are likely less tolerable than mutations in non-critical regions of the protein.
  • The indel mutations generated by NHEJ are unpredictable in nature; however, at a given break site certain indel sequences are favored and are over represented in the population, likely due to small regions of microhomology. The lengths of deletions can vary widely; most commonly in the 1-50 bp range, but they can reach greater than 100-200 bp. Insertions tend to be shorter and often include short duplications of the sequence immediately surrounding the break site. However, it is possible to obtain large insertions, and in these cases, the inserted sequence has often been traced to other regions of the genome or to plasmid DNA present in the cells.
  • Because NHEJ is a mutagenic process, it can also be used to delete small sequence motifs (e.g., motifs less than or equal to 50 nucleotides in length) as long as the generation of a specific final sequence is not required. If a double-strand break is targeted near to a target sequence, the deletion mutations caused by the NHEJ repair often span, and therefore remove, the unwanted nucleotides. For the deletion of larger DNA segments, introducing two double-strand breaks, one on each side of the sequence, can result in NHEJ between the ends with removal of the entire intervening sequence. In this way, DNA segments as large as several hundred kilobases can be deleted. Both of these approaches can be used to delete specific DNA sequences; however, the error-prone nature of NHEJ may still produce indel mutations at the site of repair.
  • Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate NHEJ-mediated indels. NHEJ-mediated indels targeted to the gene, e.g., a coding region, e.g., an early coding region of a gene, of interest can be used to knockout (i.e., eliminate expression of) a gene of interest. For example, early coding region of a gene of interest includes sequence immediately following a start codon, within a first exon of the coding sequence, or within 500 bp of the start codon (e.g., less than 500, 450, 400, 350, 300, 250, 200, 150, 100 or 50 bp).
  • Placement of Double Strand or Single Strand Breaks Relative to the Target Position
  • In an embodiment, in which a gRNA and Cas9 nuclease generate a double strand break for the purpose of inducing NHEJ-mediated indels, a gRNA, e.g., a unimolecular (or chimeric) or modular gRNA molecule, is configured to position one double-strand break in close proximity to a nucleotide of the target position. In an embodiment, the cleavage site is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position).
  • In an embodiment, in which two gRNAs complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing NHEJ-mediated indels, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position two single-strand breaks to provide for NHEJ repair a nucleotide of the target position. In an embodiment, the gRNAs are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, essentially mimicking a double strand break. In an embodiment, the closer nick is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position), and the two nicks are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50, 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). In an embodiment, the gRNAs are configured to place a single strand break on either side of a nucleotide of the target position.
  • Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate breaks both sides of a target position. Double strand or paired single strand breaks may be generated on both sides of a target position to remove the nucleic acid sequence between the two cuts (e.g., the region between the two breaks in deleted). In one embodiment, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single strand breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single strand breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50, 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp).
  • V.3 Targeted Knockdown
  • Unlike CRISPR/Cas-mediated gene knockout, which permanently eliminates expression by mutating the gene at the DNA level, CRISPR/Cas knockdown allows for temporary reduction of gene expression through the use of artificial transcription factors. Mutating key residues in both DNA cleavage domains of the Cas9 protein (e.g. the D10A and H840A mutations) results in the generation of a catalytically inactive Cas9 (eiCas9 which is also known as dead Cas9 or dCas9) molecule. A catalytically inactive Cas9 complexes with a gRNA and localizes to the DNA sequence specified by that gRNA's targeting domain, however, it does not cleave the target DNA. Fusion of the dCas9 to an effector domain, e.g., a transcription repression domain, enables recruitment of the effector to any DNA site specified by the gRNA. Although an enxymatically inactive (eiCas9) Cas9 molecule itself can block transcription when recruited to early regions in the coding sequence, more robust repression can be achieved by fusing a transcriptional repression domain (for example KRAB, SID or ERD) to the Cas9 and recruiting it to the target knockdown position, e.g., within 1000 bp of sequence 3′ of the start codon or within 500 bp of a promoter region 5′ of the start codon of a gene. It is likely that targeting DNAseI hypersensitive sites (DHSs) of the promoter may yield more efficient gene repression or activation because these regions are more likely to be accessible to the Cas9 protein and are also more likely to harbor sites for endogenous transcription factors. Especially for gene repression, it is contemplated herein that blocking the binding site of an endogenous transcription factor would aid in downregulating gene expression. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status.
  • In an embodiment, a gRNA molecule can be targeted to a known transcription response elements (e.g., promoters, enhancers, etc.), a known upstream activating sequences (UAS), and/or sequences of unknown or known function that are suspected of being able to control expression of the target DNA.
  • CRISPR/Cas-mediated gene knockdown can be used to reduce expression of an unwanted allele or transcript. Contemplated herein are scenarios wherein permanent destruction of the gene is not ideal. In these scenarios, site-specific repression may be used to temporarily reduce or eliminate expression. It is also contemplated herein that the off-target effects of a Cas-repressor may be less severe than those of a Cas-nuclease as a nuclease can cleave any DNA sequence and cause mutations whereas a Cas-repressor may only have an effect if it targets the promoter region of an actively transcribed gene. However, while nuclease-mediated knockout is permanent, repression may only persist as long as the Cas-repressor is present in the cells. Once the repressor is no longer present, it is likely that endogenous transcription factors and gene regulatory elements would restore expression to its natural state.
  • V.4 Single-Strand Annealing
  • Single strand annealing (SSA) is another DNA repair process that repairs a double-strand break between two repeat sequences present in a target nucleic acid. Repeat sequences utilized by the SSA pathway are generally greater than 30 nucleotides in length. Resection at the break ends occurs to reveal repeat sequences on both strands of the target nucleic acid. After resection, single strand overhangs containing the repeat sequences are coated with RPA protein to prevent the repeats sequences from inappropriate annealing, e.g., to themselves. RAD52 binds to and each of the repeat sequences on the overhangs and aligns the sequences to enable the annealing of the complementary repeat sequences. After annealing, the single-strand flaps of the overhangs are cleaved. New DNA synthesis fills in any gaps, and ligation restores the DNA duplex. As a result of the processing, the DNA sequence between the two repeats is deleted. The length of the deletion can depend on many factors including the location of the two repeats utilized, and the pathway or processivity of the resection.
  • In contrast to HDR pathways, SSA does not require a template nucleic acid to alter or correct a target nucleic acid sequence. Instead, the complementary repeat sequence is utilized.
  • V. 5 Other DNA Repair Pathways
  • SSBR (Single Strand Break Repair)
  • Single-stranded breaks (SSB) in the genome are repaired by the SSBR pathway, which is a distinct mechanism from the DSB repair mechanisms discussed above. The SSBR pathway has four major stages: SSB detection, DNA end processing, DNA gap filling, and DNA ligation. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
  • In the first stage, when a SSB forms, PARP1 and/or PARP2 recognize the break and recruit repair machinery. The binding and activity of PARP1 at DNA breaks is transient and it seems to accelerate SSBr by promoting the focal accumulation or stability of SSBr protein complexes at the lesion. Arguably the most important of these SSBr proteins is XRCC1, which functions as a molecular scaffold that interacts with, stabilizes, and stimulates multiple enzymatic components of the SSBr process including the protein responsible for cleaning the DNA 3′ and 5′ ends. For instance, XRCC1 interacts with several proteins (DNA polymerase beta, PNK, and three nucleases, APE1, APTX, and APLF) that promote end processing. APE1 has endonuclease activity. APLF exhibits endonuclease and 3′ to 5′ exonuclease activities. APTX has endonuclease and 3′ to 5′ exonuclease activity.
  • This end processing is an important stage of SSBR since the 3′- and/or 5′-termini of most, if not all, SSBs are ‘damaged’. End processing generally involves restoring a damaged 3′-end to a hydroxylated state and and/or a damaged 5′ end to a phosphate moiety, so that the ends become ligation-competent. Enzymes that can process damaged 3′ termini include PNKP, APE1, and TDP1. Enzymes that can process damaged 5′ termini include PNKP, DNA polymerase beta, and APTX. LIG3 (DNA ligase III) can also participate in end processing. Once the ends are cleaned, gap filling can occur.
  • At the DNA gap filling stage, the proteins typically present are PARP1, DNA polymerase beta, XRCC1, FEN1 (flap endonculease 1), DNA polymerase delta/epsilon, PCNA, and LIG1. There are two ways of gap filling, the short patch repair and the long patch repair. Short patch repair involves the insertion of a single nucleotide that is missing. At some SSBs, “gap filling” might continue displacing two or more nucleotides (displacement of up to 12 bases have been reported). FEN1 is an endonuclease that removes the displaced 5′-residues. Multiple DNA polymerases, including Pol β, are involved in the repair of SSBs, with the choice of DNA polymerase influenced by the source and type of SSB.
  • In the fourth stage, a DNA ligase such as LIG1 (Ligase I) or LIG3 (Ligase III) catalyzes joining of the ends. Short patch repair uses Ligase III and long patch repair uses Ligase I.
  • Sometimes, SSBR is replication-coupled. This pathway can involve one or more of CtIP, MRN, ERCC1, and FEN1. Additional factors that may promote SSBR include: aPARP, PARP1, PARP2, PARG, XRCC1, DNA polymerase b, DNA polymerase d, DNA polymerase e, PCNA, LIG1, PNK, PNKP, APE1, APTX, APLF, TDP1, LIG3, FEN1, CtIP, MRN, and ERCC1.
  • MMR (Mismatch Repair)
  • Cells contain three excision repair pathways: MMR, BER, and NER. The excision repair pathways hace a common feature in that they typically recognize a lesion on one strand of the DNA, then exo/endonucleaseases remove the lesion and leave a 1-30 nucleotide gap that is sub-sequentially filled in by DNA polymerase and finally sealed with ligase. A more complete picture is given in Li, Cell Research (2008) 18:85-98, and a summary is provided here.
  • Mismatch repair (MMR) operates on mispaired DNA bases.
  • The MSH2/6 or MSH2/3 complexes both have ATPases activity that plays an important role in mismatch recognition and the initiation of repair. MSH2/6 preferentially recognizes base-base mismatches and identifies mispairs of 1 or 2 nucleotides, while MSH2/3 preferentially recognizes larger ID mispairs.
  • hMLH1 heterodimerizes with hPMS2 to form hMutL a which possesses an ATPase activity and is important for multiple steps of MMR. It possesses a PCNA/replication factor C (RFC)-dependent endonuclease activity which plays an important role in 3′ nick-directed MMR involving EXO1. (EXO1 is a participant in both HR and MMR.) It regulates termination of mismatch-provoked excision. Ligase I is the relevant ligase for this pathway. Additional factors that may promote MMR include: EXO1, MSH2, MSH3, MSH6, MLH1, PMS2, MLH3, DNA Pol d, RPA, HMGB1, RFC, and DNA ligase I.
  • Base Excision Repair (BER)
  • The base excision repair (BER) pathway is active throughout the cell cycle; it is responsible primarily for removing small, non-helix-distorting base lesions from the genome. In contrast, the related Nucleotide Excision Repair pathway (discussed in the next section) repairs bulky helix-distorting lesions. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
  • Upon DNA base damage, base excision repair (BER) is initiated and the process can be simplified into five major steps: (a) removal of the damaged DNA base; (b) incision of the subsequent a basic site; (c) clean-up of the DNA ends; (d) insertion of the correct nucleotide into the repair gap; and (e) ligation of the remaining nick in the DNA backbone. These last steps are similar to the SSBR.
  • In the first step, a damage-specific DNA glycosylase excises the damaged base through cleavage of the N-glycosidic bond linking the base to the sugar phosphate backbone. Then AP endonuclease-1 (APE1) or bifunctional DNA glycosylases with an associated lyase activity incised the phosphodiester backbone to create a DNA single strand break (SSB). The third step of BER involves cleaning-up of the DNA ends. The fourth step in BER is conducted by Pol R that adds a new complementary nucleotide into the repair gap and in the final step XRCC1/Ligase III seals the remaining nick in the DNA backbone. This completes the short-patch BER pathway in which the majority (˜80%) of damaged DNA bases are repaired. However, if the 5′-ends in step 3 are resistant to end processing activity, following one nucleotide insertion by Pol β there is then a polymerase switch to the replicative DNA polymerases, Pol 6/c, which then add ˜2-8 more nucleotides into the DNA repair gap. This creates a 5′-flap structure, which is recognized and excised by flap endonuclease-1 (FEN-1) in association with the processivity factor proliferating cell nuclear antigen (PCNA). DNA ligase I then seals the remaining nick in the DNA backbone and completes long-patch BER. Additional factors that may promote the BER pathway include: DNA glycosylase, APE 1, Polb, Pold, Pole, XRCC1, Ligase III, FEN-1, PCNA, RECQL4, WRN, MYH, PNKP, and APTX.
  • Nucleotide Excision Repair (NER)
  • Nucleotide excision repair (NER) is an important excision mechanism that removes bulky helix-distorting lesions from DNA. Additional details about NER are given in Marteijn et al., Nature Reviews Molecular Cell Biology 15, 465-481 (2014), and a summary is given here. NER a broad pathway encompassing two smaller pathways: global genomic NER (GG-NER) and transcription coupled repair NER (TC-NER). GG-NER and TC-NER use different factors for recognizing DNA damage. However, they utilize the same machinery for lesion incision, repair, and ligation.
  • Once damage is recognized, the cell removes a short single-stranded DNA segment that contains the lesion. Endonucleases XPF/ERCC1 and XPG (encoded by ERCC5) remove the lesion by cutting the damaged strand on either side of the lesion, resulting in a single-strand gap of 22-30 nucleotides. Next, the cell performs DNA gap filling synthesis and ligation. Involved in this process are: PCNA, RFC, DNA Pol 6, DNA Pol F or DNA Pol x, and DNA ligase I or XRCC1/Ligase III. Replicating cells tend to use DNA pol F and DNA ligase I, while non-replicating cells tend to use DNA Pol 6, DNA Pol K, and the XRCC1/Ligase III complex to perform the ligation step.
  • NER can involve the following factors: XPA-G, POLH, XPF, ERCC1, XPA-G, and LIG1. Transcription-coupled NER (TC-NER) can involve the following factors: CSA, CSB, XPB, XPD, XPG, ERCC1, and TTDA. Additional factors that may promote the NER repair pathway include XPA-G, POLH, XPF, ERCC1, XPA-G, LIG1, CSA, CSB, XPA, XPB, XPC, XPD, XPF, XPG, TTDA, UVSSA, USP7, CETN2, RAD23B, UV-DDB, CAK subcomplex, RPA, and PCNA.
  • Interstrand Crosslink (ICL)
  • A dedicated pathway called the ICL repair pathway repairs interstrand crosslinks. Interstrand crosslinks, or covalent crosslinks between bases in different DNA strand, can occur during replication or transcription. ICL repair involves the coordination of multiple repair processes, in particular, nucleolytic activity, translesion synthesis (TLS), and HDR. Nucleases are recruited to excise the ICL on either side of the crosslinked bases, while TLS and HDR are coordinated to repair the cut strands. ICL repair can involve the following factors: endonucleases, e.g., XPF and RAD51C, endonucleases such as RAD51, translesion polymerases, e.g., DNA polymerase zeta and Rev1), and the Fanconi anemia (FA) proteins, e.g., FancJ.
  • Other Pathways
  • Several other DNA repair pathways exist in mammals.
  • Translesion synthesis (TLS) is a pathway for repairing a single stranded break left after a defective replication event and involves translesion polymerases, e.g., DNA pol□ and Rev1.
  • Error-free postreplication repair (PRR) is another pathway for repairing a single stranded break left after a defective replication event.
  • V.6 Examples of gRNAs in Genome Editing Methods
  • gRNA molecules as described herein can be used with Cas9 molecules that generate a double strand break or a single strand break to alter the sequence of a target nucleic acid, e.g., a target position or target genetic signature. gRNA molecules useful in these methods are described below.
  • In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
  • a) it can position, e.g., when targeting a Cas9 molecule that makes double strand breaks, a double strand break (i) within 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
  • b) it has a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
  • c)
      • (i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
      • (v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and c.
  • In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
  • In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
  • a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
  • b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
  • c)
      • (i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
      • (v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
  • In an embodiment, the gRNA is configured such that it comprises properties: a and c.
  • In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
  • In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
  • In an embodiment, the gRNA is used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
  • In an embodiment, the gRNA is used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at 840, e.g., the H840A.
  • In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
  • In an embodiment, a pair of gRNAs, e.g., a pair of chimeric gRNAs, comprising a first and a second gRNA, is configured such that they comprises one or more of the following properties;
  • a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
  • b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides;
  • c) for one or both:
      • (i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3′ to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3′ to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
      • (iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; or, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
      • (v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain;
  • d) the gRNAs are configured such that, when hybridized to target nucleic acid, they are separated by 0-50, 0-100, 0-200, at least 10, at least 20, at least 30 or at least 50 nucleotides;
  • e) the breaks made by the first gRNA and second gRNA are on different strands; and
  • f) the PAMs are facing outwards.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iv).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(v).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vi).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(viii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ix).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(x).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(xi).
  • In an embodiment, one or both of the gRNAs configured such that it comprises properties: a and c.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a, b, and c.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, d, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(i).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(ii).
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and d.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and e.
  • In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, d, and e.
  • In an embodiment, the gRNAs are used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
  • In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at H840, e.g., the H840A mutation.
  • In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
  • VI. Target Cells
  • Cas9 molecules and gRNA molecules, e.g., a Cas9 molecule/gRNA molecule complex, can be used to manipulate a cell, e.g., to edit a target nucleic acid, in a wide variety of cells.
  • In an embodiment, a cell is manipulated by editing (e.g., inducing a mutation in) the HBB and/or BCL11A target genes, e.g., as described herein. In an embodiment, the expression of the HBB and/or BCL11A target genes is modulated, e.g., in vivo. In another embodiment, the expression of the HBB and/or BCL11A target genes is modulated, e.g., ex vivo.
  • The Cas9 and gRNA molecules described herein can be delivered to a target cell. In an embodiment, the target cell is a circulating blood cell, e.g., a reticulocyte, a myeloid progenitor cell, or a hematopoietic stem cell. In an embodiment, the target cell is a bone marrow cell (e.g., a myeloid progenitor cell, an erythroid progenitor cell, a hematopoietic stem cell, or a mesenchymal stem cell). In an embodiment, the target cell is a myeloid progenitor cell (e.g. a common myeloid progenitor (CMP) cell). In an embodiment, the target cell is an erythroid progenitor cell (e.g. a megakaryocyte erythroid progenitor (MEP) cell). In an embodiment, the target cell is a hematopoietic stem cell (e.g. a long term hematopoietic stem cell (LT-HSC), a short term hematopoietic stem cell (ST-HSC), a multipotent progenitor (MPP) cell, a lineage restricted progenitor (LRP) cell).
  • In an embodiment, the target cell is manipulated ex vivo by editing (e.g., inducing a mutation in) the HBB and/or BCL11A target genes and/or modulating the expression of the HBB and/or BCL11A target genes, and administered to the subject. Sources of target cells for ex vivo manipulation may include, by way of example, the subject's blood, the subject's cord blood, or the subject's bone marrow. Sources of target cells for ex vivo manipulation may also include, by way of example, heterologous donor blood, cord blood, or bone marrow.
  • In an embodiment, a myeloid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the myeloid progenitor cell is returned to the subject. In an embodiment, an erythroid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the erythroid progenitor cell is returned to the subject. In an embodiment, a hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the hematopoietic stem cell is returned to the subject. In an embodiment, a CD34+ hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the CD34+ hematopoietic stem cell is returned to the subject.
  • A suitable cell can also include a stem cell such as, by way of example, an embryonic stem cell, an induced pluripotent stem cell, a hematopoietic stem cell, a neuronal stem cell and a mesenchymal stem cell. In an embodiment, the cell is an induced pluripotent stem (iPS) cell or a cell derived from an iPS cell, e.g., an iPS cell generated from the subject, modified to induce a mutation and differentiated into a clinically relevant cell such as a myeloid progenitor cell, an erythroid progenitor cell or a hematopoietic stem cell. In an embodiment, AAV is used to transduce the target cells, e.g., the target cells described herein.
  • Cells produced by the methods described herein may be used immediately. Alternatively, the cells may be frozen (e.g., in liquid nitrogen) and stored for later use. The cells will usually be frozen in 10% dimehtylsulfoxide (DMSO), 50% serum, 40% buffered medium, or some other such solution as is commonly used in the art to preserve cells at such freezing temperature and thawed in such a manner as commonly known in the art for thawing frozen cultured cells.
  • VII. Delivery, Formulations and Routes of Administration
  • The components, e.g., a Cas9 molecule and gRNA molecule (e.g., a Cas9 molecule/gRNA molecule complex), and a donor template nucleic acid, can be delivered or formulated in a variety of forms, see, e.g., Tables 34-35. In an embodiment, one Cas9 molecule and two or more (e.g., 2, 3, 4, or more) different gRNA molecules are delivered, e.g., by an AAV vector. In an embodiment, the sequence encoding the Cas9 molecule and the sequence(s) encoding the two or more (e.g., 2, 3, 4, or more) different gRNA molecules are present on the same nucleic acid molecule, e.g., an AAV vector. When a Cas9 or gRNA component is encoded as DNA for delivery, the DNA will typically but not necessarily include a control region, e.g., comprising a promoter, to effect expression. Useful promoters for Cas9 molecule sequences include CMV, EFS, EF-1a, MSCV, PGK, CAG promoters. In an embodiment, the promoter is a constitutive promoter. In another embodiment, the promoter is a tissue specific promoter. Useful promoters for gRNAs include H1, 7SK, tRNA, and U6 promoters. Promoters with similar or dissimilar strengths can be selected to tune the expression of components. Sequences encoding a Cas9 molecule can comprise a nuclear localization signal (NLS), e.g., an SV40 NLS. In an embodiment, the sequence encoding a Cas9 molecule comprises at least two nuclear localization signals. In an embodiment a promoter for a Cas9 molecule or a gRNA molecule can be, independently, inducible, tissue specific, or cell specific.
  • Table 34 provides examples of how the components can be formulated, delivered, or administered.
  • TABLE 34
    Elements
    Donor
    Cas9 gRNA Template
    Molecule(s) Molecule(s) Nucleic Acid Comments
    DNA DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, and a gRNA are transcribed
    from DNA. In this embodiment, they are
    encoded on separate molecules. In this
    embodiment, the donor template is provided as a
    separate DNA molecule.
    DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, and a gRNA are transcribed
    from DNA. In this embodiment, they are
    encoded on separate molecules. In this
    embodiment, the donor template is provided on
    the same DNA molecule that encodes the gRNA.
    DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, and a gRNA are transcribed
    from DNA, here from a single molecule. In this
    embodiment, the donor template is provided as a
    separate DNA molecule.
    DNA DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, and a gRNA are transcribed
    from DNA. In this embodiment, they are
    encoded on separate molecules. In this
    embodiment, the donor template is provided on
    the same DNA molecule that encodes the Cas9.
    DNA RNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is transcribed from DNA,
    and a gRNA is provided as in vitro transcribed or
    synthesized RNA. In this embodiment, the donor
    template is provided as a separate DNA molecule.
    DNA RNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is transcribed from DNA,
    and a gRNA is provided as in vitro transcribed or
    synthesized RNA. In this embodiment, the donor
    template is provided on the same DNA molecule
    that encodes the Cas9.
    mRNA RNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is translated from in vitro
    transcribed mRNA, and a gRNA is provided as in
    vitro transcribed or synthesized RNA. In this
    embodiment, the donor template is provided as a
    DNA molecule.
    mRNA DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is translated from in vitro
    transcribed mRNA, and a gRNA is transcribed
    from DNA. In this embodiment, the donor
    template is provided as a separate DNA molecule.
    mRNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is translated from in vitro
    transcribed mRNA, and a gRNA is transcribed
    from DNA. In this embodiment, the donor
    template is provided on the same DNA molecule
    that encodes the gRNA.
    Protein DNA DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is provided as a protein, and
    a gRNA is transcribed from DNA. In this
    embodiment, the donor template is provided as a
    separate DNA molecule.
    Protein DNA In this embodiment, a Cas9 molecule, typically
    an eaCas9 molecule, is provided as a protein, and
    a gRNA is transcribed from DNA. In this
    embodiment, the donor template is provided on
    the same DNA molecule that encodes the gRNA.
    Protein RNA DNA In this embodiment, an eaCas9 molecule is
    provided as a protein, and a gRNA is provided as
    transcribed or synthesized RNA. In this
    embodiment, the donor template is provided as a
    DNA molecule.
  • Table 35 summarizes various delivery methods for the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, as described herein.
  • TABLE 35
    Delivery Duration
    into Non- of Genome Type of
    Dividing Expres- Inte- Molecule
    Delivery Vector/Mode Cells sion gration Delivered
    Physical (eg, YES Transient NO Nucleic
    electroporation, Acids
    particle gun, Calcium and
    Phosphate transfection) Proteins
    Viral Retrovirus NO Stable YES RNA
    Lentivirus YES Stable YES/NO RNA
    with
    modi-
    fications
    Adenovirus YES Transient NO DNA
    Adeno- YES Stable NO DNA
    Associated
    Virus (AAV)
    Vaccinia YES Very NO DNA
    Virus Transient
    Herpes YES Stable NO DNA
    Simplex
    Virus
    Non- Cationic YES Transient Depends Nucleic
    Viral Liposomes on Acids
    what is and
    delivered Proteins
    Polymeric YES Transient Depends Nucleic
    Nano- on Acids
    particles what is and
    delivered Proteins
    Bio- Attenuated YES Transient NO Nucleic
    logical Bacteria Acids
    Non- Engineered YES Transient NO Nucleic
    Viral Bacteriophages Acids
    Delivery Mammalian YES Transient NO Nucleic
    Vehicles Virus-like Acids
    Particles
    Biological YES Transient NO Nucleic
    liposomes: Acids
    Erythrocyte
    Ghosts and
    Exosomes

    DNA-Based Delivery of a Cas9 Molecule and/or One or More gRNA Molecule and/or a Donor Template
  • Nucleic acids (e.g., DNA) encoding a Cas9 molecule (e.g., an eaCas9 molecule), a gRNA molecule, a donor template nucleic acid, or any combination (e.g., two or all) thereof, can be administered to subjects or delivered into cells by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding DNA, as well as donor template nucleic acids, can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA complexes), or a combination thereof. Donor template molecules can be administered to subjects or delivered into cells by art-known methods or as described herein. For example, donor template molecules can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA complexes), or a combination thereof.
  • Nucleic acids (e.g., DNA) encoding Cas9 molecules (e.g., eaCas9 molecules) and/or gRNA molecules can be conjugated to molecules to promote uptake by the target cells (e.g., the target cells describe herein). Donor template molecules can be conjugated to molecules to promote uptake by the target cells (e.g., the target cells describe herein).
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a vector (e.g., viral vector/virus or plasmid).
  • A vector can comprise a sequence that encodes a Cas9 molecule and/or a gRNA molecule. A vector can also comprise a sequence encoding a signal peptide (e.g., for nuclear localization, nucleolar localization, mitochondrial localization), fused, e.g., to a Cas9 molecule sequence. For example, ae vector can comprise a nuclear localization sequence (e.g., from SV40) fused to the sequence encoding the Cas9 molecule.
  • One or more regulatory/control elements, e.g., a promoter, an enhancer, an intron, a polyadenylation signal, a Kozak consensus sequence, internal ribosome entry sites (IRES), a 2A sequence, and splice acceptor or donor can be included in the vectors. In an embodiment, the promoter is recognized by RNA polymerase II (e.g., a CMV promoter). In another embodiment, the promoter is recognized by RNA polymerase III (e.g., a U6 promoter). In an embodiment, the promoter is a regulated promoter (e.g., inducible promoter). In another embodiment, the promoter is a constitutive promoter. In an embodiment, the promoter is a tissue specific promoter. In an embodiment, the promoter is a viral promoter. In another embodiment, the promoter is a non-viral promoter.
  • In an embodiment, the vector or delivery vehicle is a viral vector (e.g., for generation of recombinant viruses). In an embodiment, the virus is a DNA virus (e.g., dsDNA or ssDNA virus). In another embodiment, the virus is an RNA virus (e.g., an ssRNA virus). Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
  • In an embodiment, the virus infects dividing cells. In another embodiment, the virus infects non-dividing cells. In an embodiment, the virus infects both dividing and non-dividing cells. In an embodiment, the virus can integrate into the host genome. In an embodiment, the virus is engineered to have reduced immunity, e.g., in human. In an embodiment, the virus is replication-competent. In another embodiment, the virus is replication-defective, e.g., having one or more coding regions for the genes necessary for additional rounds of virion replication and/or packaging replaced with other genes or deleted. In an embodiment, the virus causes transient expression of the Cas9 molecule and/or the gRNA molecule. In another embodiment, the virus causes long-lasting, e.g., at least 1 week, 2 weeks, 1 month, 2 months, 3 months, 6 months, 9 months, 1 year, 2 years, or permanent expression, of the Cas9 molecule and/or the gRNA molecule. The packaging capacity of the viruses may vary, e.g., from at least about 4 kb to at least about 30 kb, e.g., at least about 5 kb, 10 kb, 15 kb, 20 kb, 25 kb, 30 kb, 35 kb, 40 kb, 45 kb, or 50 kb.
  • In an embodiment, the viral vector recognizes a specific cell type or tissue. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., genetic modification(s) of one or more viral envelope glycoproteins to incorporate a targeting ligand such as a peptide ligand, a single chain antibody, or a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., a ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
  • Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
  • In an embodiment, the Cas9- and/or gRNA-encoding nucleic acid sequence is delivered by a recombinant retrovirus. In an embodiment, the donor template nucleic acid is delivered by a recombinant retrovirus. In an embodiment, the retrovirus (e.g., Moloney murine leukemia virus) comprises a reverse transcriptase, e.g., that allows integration into the host genome. In an embodiment, the retrovirus is replication-competent. In another embodiment, the retrovirus is replication-defective, e.g., having one of more coding regions for the genes necessary for additional rounds of virion replication and packaging replaced with other genes, or deleted.
  • In an embodiment, the Cas9- and/or gRNA-encoding nucleic acid sequence is delivered by a recombinant lentivirus. In an embodiment, the donor template nucleic acid is delivered by a recombinant lentivirus. For example, the lentivirus is replication-defective, e.g., does not comprise one or more genes required for viral replication.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant adenovirus. In an embodiment, the donor template nucleic acid is delivered by a recombinant adenovirus. In an embodiment, the adenovirus is engineered to have reduced immunity in human.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant AAV. In an embodiment, the donor template nucleic acid is delivered by a recombinant AAV. In some embodiments, the AAV does not incorporate its genome into that of a host cell, e.g., a target cell as describe herein. In an embodiment, the AAV can incorporate its genome into that of a host cell, e.g., a target cell as described herein. In an embodiment, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA. AAV serotypes that may be used in the disclosed methods, include AAV1, AAV2, modified AAV2 (e.g., modifications at Y444F, Y500F, Y730F and/or S662V), AAV3, modified AAV3 (e.g., modifications at Y705F, Y731F and/or T492V), AAV4, AAV5, AAV6, modified AAV6 (e.g., modifications at S663V and/or T492V), AAV8, AAV 8.2, AAV9, AAV rh l0, and pseudotyped AAV, such as AAV2/8, AAV2/5 and AAV2/6 can also be used in the disclosed methods.
  • In an embodiment, an AAV capsid that can be used in the methods described herein is a capsid sequence from serotype AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rh10, AAV.rh32/33, AAV.rh43, AAV.rh64R1, or AAV7m8.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered in a re-engineered AAV capsid, e.g., with 50% or greater, e.g., 60% or greater, 70% or greater, 80% or greater, 90% or greater, or 95% or greater, sequence homology with a capsid sequence from serotypes AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rh10, AAV.rh32/33, AAV.rh43, or AAV.rh64R1.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a chimeric AAV capsid. In an embodiment, the donor template nucleic acid is delivered by a chimeric AAV capsid. Exemplary chimeric AAV capsids include, but are not limited to, AAV9i1, AAV2i8, AAV-DJ, AAV2G9, AAV2i8G9, or AAV8G9.
  • In an embodiment, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a hybrid virus, e.g., a hybrid of one or more of the viruses described herein. In an embodiment, the hybrid virus is hybrid of an AAV (e.g., of any AAV serotype), with a Bocavirus, B19 virus, porcine AAV, goose AAV, feline AAV, canine AAV, or MVM.
  • A Packaging cell is used to form a virus particle that is capable of infecting a target cell. Such a cell includes a 293 cell, which can package adenovirus, and a ψ2 cell or a PA317 cell, which can package retrovirus. A viral vector used in gene therapy is usually generated by a producer cell line that packages a nucleic acid vector into a viral particle. The vector typically contains the minimal viral sequences required for packaging and subsequent integration into a host or target cell (if applicable), with other viral sequences being replaced by an expression cassette encoding the protein to be expressed, eg. Cas9. For example, an AAV vector used in gene therapy typically only possesses inverted terminal repeat (ITR) sequences from the AAV genome which are required for packaging and gene expression in the host or target cell. The missing viral functions can be supplied in trans by the packaging cell line and/or plasmid containing E2A, E4, and VA genes from adenovirus, and plasmid encoding Rep and Cap genes from AAV, as described in “Triple Transfection Protocol.” Henceforth, the viral DNA is packaged in a cell line, which contains a helper plasmid encoding the other AAV genes, namely rep and cap, but lacking ITR sequences. In embodiment, the viral DNA is packaged in a producer cell line, which contains E1A and/or E1B genes from adenovirus. The cell line is also infected with adenovirus as a helper. The helper virus (e.g., adenovirus or HSV) or helper plasmid promotes replication of the AAV vector and expression of AAV genes from the helper plasmid with ITRs. The helper plasmid is not packaged in significant amounts due to a lack of ITR sequences. Contamination with adenovirus can be reduced by, e.g., heat treatment to which adenovirus is more sensitive than AAV.
  • In an embodiment, the viral vector has the ability of cell type and/or tissue type recognition. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., geneticmodification of the viral envelope glycoproteins to incorporate targeting ligands such as a peptide ligand, a single chain antibodie, a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
  • In an embodiment, the viral vector achieves cell type specific expression. For example, a tissue-specific promoter can be constructed to restrict expression of the transgene (Cas 9 and gRNA) in only the target cell. The specificity of the vector can also be mediated by microRNA-dependent control of transgene expression. In an embodiment, the viral vector has increased efficiency of fusion of the viral vector and a target cell membrane. For example, a fusion protein such as fusion-competent hemagglutin (HA) can be incorporated to increase viral uptake into cells. In an embodiment, the viral vector has the ability of nuclear localization. For example, aviruse that requires the breakdown of the nuclear envelope (during cell division) and therefore will not infect a non-diving cell can be altered to incorporate a nuclear localization peptide in the matrix protein of the virus thereby enabling the transduction of non-proliferating cells.
  • In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a non-vector based method (e.g., using naked DNA or DNA complexes). For example, the DNA can be delivered, e.g., by organically modified silica or silicate (Ormosil), electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., Nano Lett 12: 6322-27), gene gun, sonoporation, magnetofection, lipid-mediated transfection, dendrimers, inorganic nanoparticles, calcium phosphates, or a combination thereof.
  • In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9- and/or gRNA-encoding DNA in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9- and/or gRNA-encoding DNA in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel.
  • In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a combination of a vector and a non-vector based method. In an embodiment, the donor template nucleic acid is delivered by a combination of a vector and a non-vector based method. For example, a virosome comprises a liposome combined with an inactivated virus (e.g., HIV or influenza virus), which can result in more efficient gene transfer, e.g., in a respiratory epithelial cell than either a viral or a liposomal method alone.
  • In an embodiment, the delivery vehicle is a non-viral vector. In an embodiment, the non-viral vector is an inorganic nanoparticle. Exemplary inorganic nanoparticles include, e.g., magnetic nanoparticles (e.g., Fe3MnO2) or silica. The outer surface of the nanoparticle can be conjugated with a positively charged polymer (e.g., polyethylenimine, polylysine, polyserine) which allows for attachment (e.g., conjugation or entrapment) of payload. In an embodiment, the non-viral vector is an organic nanoparticle (e.g., entrapment of the payload inside the nanoparticle). Exemplary organic nanoparticles include, e.g., SNALP liposomes that contain cationic lipids together with neutral helper lipids which are coated with polyethylene glycol (PEG) and protamine and nucleic acid complex coated with lipid coating.
  • Exemplary lipids for gene transfer are shown below in Table 36.
  • TABLE 36
    Lipids Used for Gene Transfer
    Lipid Abbreviation Feature
    1,2-Dioleoyl-sn-glycero-3-phosphatidylcholine DOPC Helper
    1,2-Dioleoyl-sn-glycero-3- phosphatidylethanolamine DOPE Helper
    Cholesterol Helper
    N-[1-(2,3-Dioleyloxy)prophyl]N,N,N- trimethylammonium DOTMA Cationic
    chloride
    l,2-Dioleoyloxy-3-trimethylammonium-propane DOTAP Cationic
    Dioctadecylamidoglycylspermine DOGS Cationic
    N-(3-Aminopropyl)-N,N-dimethyl- 2,3-bis(dodecyloxy)-1- GAP-DLRIE Cationic
    propanaminium bromide
    Cetyltrimethylammonium bromide CTAB Cationic
    6-Lauroxyhexyl ornithinate LHON Cationic
    1-(2,3-Dioleoyloxypropyl)-2,4,6- trimethylpyridinium 2Oc Cationic
    2,3-Dioleyloxy-N-[2(sperminecarboxamido- ethyl]-N,N-dimethyl- DOSPA Cationic
    1-propanaminium trifluoroacetate
    1,2-Dioleyl-3-trimethylammonium-propane DOPA Cationic
    N-(2-Hydroxyethyl)-N,N-dimethyl- 2,3-bis(tetradecyloxy)-1- MDRIE Cationic
    propanaminium bromide
    Dimyristooxypropyl dimethyl hydroxyethyl ammonium bromide DMRI Cationic
    3β-[N-(N’,N’-Dimethylaminoethane)- carbamoyl]cholesterol DC-Chol Cationic
    Bis-guanidium-tren-cholesterol BGTC Cationic
    1,3-Diodeoxy-2-(6-carboxy- spermyl)-propylamide DOSPER Cationic
    Dimethyloctadecylammonium bromide DDAB Cationic
    Dioctadecylamidoglicylspermidin DSL Cationic
    rac-[(2,3-Dioctadecyloxypropyl)(2- hydroxyethyl)]- CLIP-1 Cationic
    dimethylammonium chloride
    rac-[2(2,3-Dihexadecyloxypropyl- CLIP-6 Cationic
    oxymethyloxy)ethyl]trimethylammonium bromide
    Ethyldimyristoylphosphatidylcholine EDMPC Cationic
    1,2-Distearyloxy-N,N-dimethyl- 3-aminopropane DSDMA Cationic
    1,2-Dimyristoyl-trimethylammonium propane DMTAP Cationic
    O,O’-Dimyristyl-N-lysyl aspartate DMKE Cationic
    1,2-Distearoyl-sn-glycero-3- ethylphosphocholine DSEPC Cationic
    N-Palmitoyl D-erythro-sphingosyl carbamoyl-spermine CCS Cationic
    N-t-Butyl-N0-tetradecyl-3- tetradecylaminopropionamidine diC14-amidine Cationic
    Octadecenolyoxy[ethyl-2- heptadecenyl-3 hydroxyethyl] DOTIM Cationic
    imidazolinium chloride
    N1-Cholesteryloxycarbonyl-3,7- diazanonane-1,9-diamine CDAN Cationic
    2-(3-[Bis(3-amino-propyl)- amino]propylamino)-N- RPR209120 Cationic
    ditetradecylcarbamoylme-ethyl-acetamide
  • Exemplary polymers for gene transfer are shown below in Table 37.
  • TABLE 37
    Polymers Used for Gene Transfer
    Polymer Abbreviation
    Poly(ethylene)glycol PEG
    Polyethylenimine PEI
    Dithiobis(succinimidylpropionate) DSP
    Dimethyl-3,3’-dithiobispropionimidate DTBP
    Poly(ethylene imine) biscarbamate PEIC
    Poly(L-lysine) PLL
    Histidine modified PLL
    Poly(N-vinylpyrrolidone) PVP
    Poly(propylenimine) PPI
    Poly(amidoamine) PAMAM
    Poly(amido ethylenimine) SS-PAEI
    Triethylenetetramine TETA
    Poly(β-aminoester)
    Poly(4-hydroxy-L-proline ester) PHP
    Poly(allylamine)
    Poly (α-[4-aminobutyl]-L-glycolic acid) PAGA
    Poly(D,L-lactic-co-glycolic acid) PLGA
    Poly(N-ethyl-4-vinylpyridinium bromide)
    Poly(phosphazene)s PPZ
    Poly(phosphoester)s PPE
    Poly(phosphoramidate)s PPA
    Poly(N-2-hydroxypropylmethacrylamide) pHPMA
    Poly (2-(dimethylamino)ethyl methacrylate) pDMAEMA
    Poly(2-aminoethyl propylene phosphate) PPE-EA
    Chitosan
    Galactosylated chitosan
    N-Dodacylated chitosan
    Histone
    Collagen
    Dextran-spermine D-SPM
  • In an embodiment, the vehicle has targeting modifications to increase target cell update of nanoparticles and liposomes, e.g., cell specific antigens, monoclonal antibodies, single chain antibodies, aptamers, polymers, sugars, and cell penetrating peptides. In an embodiment, the vehicle uses fusogenic and endosome-destabilizing peptides/polymers. In an embodiment, the vehicle undergoes acid-triggered conformational changes (e.g., to accelerate endosomal escape of the cargo). In an embodiment, a stimuli-cleavable polymer is used, e.g., for release in a cellular compartment. For example, disulfide-based cationic polymers that are cleaved in the reducing cellular environment can be used.
  • In an embodiment, the delivery vehicle is a biological non-viral delivery vehicle. In an embodiment, the vehicle is an attenuated bacterium (e.g., naturally or artificially engineered to be invasive but attenuated to prevent pathogenesis and expressing the transgene (e.g., Listeria monocytogenes, certain Salmonella strains, Bifidobacterium longum, and modified Escherichia coli), bacteria having nutritional and tissue-specific tropism to target specific tissues, bacteria having modified surface proteins to alter target tissue specificity). In an embodiment, the vehicle is a genetically modified bacteriophage (e.g., engineered phages having large packaging capacity, less immunogenic, containing mammalian plasmid maintenance sequences and having incorporated targeting ligands). In an embodiment, the vehicle is a mammalian virus-like particle. For example, modified viral particles can be generated (e.g., by purification of the “empty” particles followed by ex vivo assembly of the virus with the desired cargo). The vehicle can also be engineered to incorporate targeting ligands to alter target tissue specificity. In an embodiment, the vehicle is a biological liposome. For example, the biological liposome is a phospholipid-based particle derived from human cells (e.g., erythrocyte ghosts, which are red blood cells broken down into spherical structures derived from the subject (e.g., tissue targeting can be achieved by attachment of various tissue or cell-specific ligands), or secretory exosomes—subject (i.e., patient) derived membrane-bound nanovescicle (30-100 nm) of endocytic origin (e.g., can be produced from various cell types and can therefore be taken up by cells without the need of for targeting ligands).
  • In an embodiment, one or more nucleic acid molecules (e.g., DNA molecules) other than the components of a Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component described herein, are delivered. In an embodiment, the nucleic acid molecule is delivered at the same time as one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered before or after (e.g., less than about 30 minutes, 1 hour, 2 hours, 3 hours, 6 hours, 9 hours, 12 hours, 1 day, 2 days, 3 days, 1 week, 2 weeks, or 4 weeks) one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered by a different means than one or more of the components of the Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component, are delivered. The nucleic acid molecule can be delivered by any of the delivery methods described herein. For example, the nucleic acid molecule can be delivered by a viral vector, e.g., an integration-deficient lentivirus, and the Cas9 molecule component and/or the gRNA molecule component can be delivered by electroporation, e.g., such that the toxicity caused by nucleic acids (e.g., DNAs) can be reduced. In an embodiment, the nucleic acid molecule encodes a therapeutic protein, e.g., a protein described herein. In an embodiment, the nucleic acid molecule encodes an RNA molecule, e.g., an RNA molecule described herein.
  • Delivery of RNA Encoding a Cas9 Molecule
  • RNA encoding Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) and/or gRNA molecules, can be delivered into cells, e.g., target cells described herein, by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding RNA can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (eg, as described in Lee, et al., 2012, Nano Lett 12: 6322-27), lipid-mediated transfection, peptide-mediated delivery, or a combination thereof. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules) promoting uptake by the target cells (e.g., target cells described herein).
  • In an embodiment, delivery via electroporation comprises mixing the cells with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) and/or gRNA molecules, with or without donor template nucleic acid molecules, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) and/or gRNA molecules, with or without donor template nucleic acid molecules in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
  • Delivery Cas9 Molecule Protein
  • Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) can be delivered into cells by art-known methods or as described herein. For example, Cas9 protein molecules can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (eg, as described in Lee, et al [2012] Nano Lett 12: 6322-27), lipid-mediated transfection, peptide-mediated delivery, or a combination thereof. Delivery can be accompanied by DNA encoding a gRNA or by a gRNA. Cas9 protein can be conjugated to molecules promoting uptake by the target cells (e.g., target cells described herein).
  • In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) and/or gRNA molecules, with or without donor nucleic acid, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) and/or gRNA molecules, with or without donor nucleic acid in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
  • Route of Administration
  • Systemic modes of administration include oral and parenteral routes. Parenteral routes include, by way of example, intravenous, intrarterial, intraosseous, intramuscular, intradermal, subcutaneous, intranasal and intraperitoneal routes. Components administered systemically may be modified or formulated to target the components to cells of the blood and bone marrow.
  • Local modes of administration include, by way of example, intra-bone marrow, intrathecal, and intra-cerebroventricular routes. In an embodiment, significantly smaller amounts of the components (compared with systemic approaches) may exert an effect when administered locally (for example, intra-bone marrow) compared to when administered systemically (for example, intravenously). Local modes of administration can reduce or eliminate the incidence of potentially toxic side effects that may occur when therapeutically effective amounts of a component are administered systemically.
  • In an embodiment, components described herein are delivered by intra-bone marrow injection. Injections may be made directly into the bone marrow compartment of one or more than one bone. In an embodiment, nanoparticle or viral, e.g., AAV vector, delivery is via intra-bone marrow injection.
  • Administration may be provided as a periodic bolus or as continuous infusion from an internal reservoir or from an external reservoir (for example, from an intravenous bag). Components may be administered locally, for example, by continuous release from a sustained release drug delivery device
  • In addition, components may be formulated to permit release over a prolonged period of time. A release system can include a matrix of a biodegradable material or a material which releases the incorporated components by diffusion. The components can be homogeneously or heterogeneously distributed within the release system. A variety of release systems may be useful, however, the choice of the appropriate system will depend upon rate of release required by a particular application. Both non-degradable and degradable release systems can be used. Suitable release systems include polymers and polymeric matrices, non-polymeric matrices, or inorganic and organic excipients and diluents such as, but not limited to, calcium carbonate and sugar (for example, trehalose). Release systems may be natural or synthetic. However, synthetic release systems are preferred because generally they are more reliable, more reproducible and produce more defined release profiles. The release system material can be selected so that components having different molecular weights are released by diffusion through or degradation of the material.
  • Representative synthetic, biodegradable polymers include, for example: polyamides such as poly(amino acids) and poly(peptides); polyesters such as poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), and poly(caprolactone); poly(anhydrides); polyorthoesters; polycarbonates; and chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof. Representative synthetic, non-degradable polymers include, for example: polyethers such as poly(ethylene oxide), poly(ethylene glycol), and poly(tetramethylene oxide); vinyl polymers-polyacrylates and polymethacrylates such as methyl, ethyl, other alkyl, hydroxyethyl methacrylate, acrylic and methacrylic acids, and others such as poly(vinyl alcohol), poly(vinyl pyrolidone), and poly(vinyl acetate); poly(urethanes); cellulose and its derivatives such as alkyl, hydroxyalkyl, ethers, esters, nitrocellulose, and various cellulose acetates; polysiloxanes; and any chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof.
  • Poly(lactide-co-glycolide) microsphere can also be used for injection. Typically the microspheres are composed of a polymer of lactic acid and glycolic acid, which are structured to form hollow spheres. The spheres can be approximately 15-30 microns in diameter and can be loaded with components described herein.
  • Bi-Modal or Differential Delivery of Components
  • Separate delivery of the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, and more particularly, delivery of the components by differing modes, can enhance performance, e.g., by improving tissue specificity and safety.
  • In an embodiment, the Cas9 molecule and the gRNA molecule are delivered by different modes, or as sometimes referred to herein as differential modes. Different or differential modes, as used herein, refer modes of delivery that confer different pharmacodynamic or pharmacokinetic properties on the subject component molecule, e.g., a Cas9 molecule, gRNA molecule, or template nucleic acid. For example, the modes of delivery can result in different tissue distribution, different half-life, or different temporal distribution, e.g., in a selected compartment, tissue, or organ.
  • Some modes of delivery, e.g., delivery by a nucleic acid vector that persists in a cell, or in progeny of a cell, e.g., by autonomous replication or insertion into cellular nucleic acid, result in more persistent expression of and presence of a component. Examples include viral, e.g., adeno-associated virus or lentivirus, delivery.
  • By way of example, the components, e.g., a Cas9 molecule and a gRNA molecule, can be delivered by modes that differ in terms of resulting half-life or persistent of the delivered component the body, or in a particular compartment, tissue or organ. In an embodiment, a gRNA molecule can be delivered by such modes. The Cas9 molecule component can be delivered by a mode which results in less persistence or less exposure to the body or a particular compartment or tissue or organ.
  • More generally, in an embodiment, a first mode of delivery is used to deliver a first component and a second mode of delivery is used to deliver a second component. The first mode of delivery confers a first pharmacodynamic or pharmacokinetic property. The first pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ. The second mode of delivery confers a second pharmacodynamic or pharmacokinetic property. The second pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ.
  • In an embodiment, the first pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure, is more limited than the second pharmacodynamic or pharmacokinetic property.
  • In an embodiment, the first mode of delivery is selected to optimize, e.g., minimize, a pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure.
  • In an embodiment, the second mode of delivery is selected to optimize, e.g., maximize, a pharmacodynamic or pharmcokinetic property, e.g., distribution, persistence or exposure.
  • In an embodiment, the first mode of delivery comprises the use of a relatively persistent element, e.g., a nucleic acid, e.g., a plasmid or viral vector, e.g., an AAV or lentivirus. As such vectors are relatively persistent product transcribed from them would be relatively persistent.
  • In an embodiment, the second mode of delivery comprises a relatively transient element, e.g., an RNA or protein.
  • In an embodiment, the first component comprises gRNA, and the delivery mode is relatively persistent, e.g., the gRNA is transcribed from a plasmid or viral vector, e.g., an AAV or lentivirus. Transcription of these genes would be of little physiological consequence because the genes do not encode for a protein product, and the gRNAs are incapable of acting in isolation. The second component, a Cas9 molecule, is delivered in a transient manner, for example as mRNA or as protein, ensuring that the full Cas9 molecule/gRNA molecule complex is only present and active for a short period of time.
  • Furthermore, the components can be delivered in different molecular form or with different delivery vectors that complement one another to enhance safety and tissue specificity.
  • Use of differential delivery modes can enhance performance, safety and efficacy. E.g., the likelihood of an eventual off-target modification can be reduced. Delivery of immunogenic components, e.g., Cas9 molecules, by less persistent modes can reduce immunogenicity, as peptides from the bacterially-derived Cas enzyme are displayed on the surface of the cell by MHC molecules. A two-part delivery system can alleviate these drawbacks.
  • Differential delivery modes can be used to deliver components to different, but overlapping target regions. The formation active complex is minimized outside the overlap of the target regions. Thus, in an embodiment, a first component, e.g., a gRNA molecule is delivered by a first delivery mode that results in a first spatial, e.g., tissue, distribution. A second component, e.g., a Cas9 molecule is delivered by a second delivery mode that results in a second spatial, e.g., tissue, distribution. In an embodiment, the first mode comprises a first element selected from a liposome, nanoparticle, e.g., polymeric nanoparticle, and a nucleic acid, e.g., viral vector. The second mode comprises a second element selected from the group. In an embodiment, the first mode of delivery comprises a first targeting element, e.g., a cell specific receptor or an antibody, and the second mode of delivery does not include that element. In embodiment, the second mode of delivery comprises a second targeting element, e.g., a second cell specific receptor or second antibody.
  • When the Cas9 molecule is delivered in a virus delivery vector, a liposome, or polymeric nanoparticle, there is the potential for delivery to and therapeutic activity in multiple tissues, when it may be desirable to only target a single tissue. A two-part delivery system can resolve this challenge and enhance tissue specificity. If the gRNA molecule and the Cas9 molecule are packaged in separated delivery vehicles with distinct but overlapping tissue tropism, the fully functional complex is only be formed in the tissue that is targeted by both vectors.
  • Ex Vivo Delivery
  • In an embodiment, components described in Table 34 are introduced into cells which are then introduced into the subject, e.g., cells are removed from a subject, manipulated ex vivo and then introduced into the subject. Methods of introducing the components can include, e.g., any of the delivery methods described in Table 35.
  • VIII. Modified Nucleosides, Nucleotides, and Nucleic Acids
  • Modified nucleosides and modified nucleotides can be present in nucleic acids, e.g., particularly gRNA, but also other forms of RNA, e.g., mRNA, RNAi, or siRNA. As described herein, “nucleoside” is defined as a compound containing a five-carbon sugar molecule (a pentose or ribose) or derivative thereof, and an organic base, purine or pyrimidine, or a derivative thereof. As described herein, “nucleotide” is defined as a nucleoside further comprising a phosphate group.
  • Modified nucleosides and nucleotides can include one or more of:
  • (i) alteration, e.g., replacement, of one or both of the non-linking phosphate oxygens and/or of one or more of the linking phosphate oxygens in the phosphodiester backbone linkage;
  • (ii) alteration, e.g., replacement, of a constituent of the ribose sugar, e.g., of the 2′ hydroxyl on the ribose sugar;
  • (iii) wholesale replacement of the phosphate moiety with “dephospho” linkers;
  • (iv) modification or replacement of a naturally occurring nucleobase;
  • (v) replacement or modification of the ribose-phosphate backbone;
  • (vi) modification of the 3′ end or 5′ end of the oligonucleotide, e.g., removal, modification or replacement of a terminal phosphate group or conjugation of a moiety; and
  • (vii) modification of the sugar.
  • The modifications listed above can be combined to provide modified nucleosides and nucleotides that can have two, three, four, or more modifications. For example, a modified nucleoside or nucleotide can have a modified sugar and a modified nucleobase. In an embodiment, every base of a gRNA is modified, e.g., all bases have a modified phosphate group, e.g., all are phosphorothioate groups. In an embodiment, all, or substantially all, of the phosphate groups of a unimolecular or modular gRNA molecule are replaced with phosphorothioate groups.
  • In an embodiment, modified nucleotides, e.g., nucleotides having modifications as described herein, can be incorporated into a nucleic acid, e.g., a “modified nucleic acid.” In an embodiment, the modified nucleic acids comprise one, two, three or more modified nucleotides. In an embodiment, at least 5% (e.g., at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, or about 100%) of the positions in a modified nucleic acid are a modified nucleotides.
  • Unmodified nucleic acids can be prone to degradation by, e.g., cellular nucleases. For example, nucleases can hydrolyze nucleic acid phosphodiester bonds. Accordingly, in one aspect the modified nucleic acids described herein can contain one or more modified nucleosides or nucleotides, e.g., to introduce stability toward nucleases.
  • In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo. The term “innate immune response” includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can disrupt binding of a major groove interacting partner with the nucleic acid. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo, and also disrupt binding of a major groove interacting partner with the nucleic acid.
  • Definitions of Chemical Groups
  • As used herein, “alkyl” is meant to refer to a saturated hydrocarbon group which is straight-chained or branched. Example alkyl groups include methyl (Me), ethyl (Et), propyl (e.g., n-propyl and isopropyl), butyl (e.g., n-butyl, isobutyl, t-butyl), pentyl (e.g., n-pentyl, isopentyl, neopentyl), and the like. An alkyl group can contain from 1 to about 20, from 2 to about 20, from 1 to about 12, from 1 to about 8, from 1 to about 6, from 1 to about 4, or from 1 to about 3 carbon atoms.
  • As used herein, “aryl” refers to monocyclic or polycyclic (e.g., having 2, 3 or 4 fused rings) aromatic hydrocarbons such as, for example, phenyl, naphthyl, anthracenyl, phenanthrenyl, indanyl, indenyl, and the like. In an embodiment, aryl groups have from 6 to about 20 carbon atoms.
  • As used herein, “alkenyl” refers to an aliphatic group containing at least one double bond.
  • As used herein, “alkynyl” refers to a straight or branched hydrocarbon chain containing 2-12 carbon atoms and characterized in having one or more triple bonds. Examples of alkynyl groups include, but are not limited to, ethynyl, propargyl, and 3-hexynyl.
  • As used herein, “arylalkyl” or “aralkyl” refers to an alkyl moiety in which an alkyl hydrogen atom is replaced by an aryl group. Aralkyl includes groups in which more than one hydrogen atom has been replaced by an aryl group. Examples of “arylalkyl” or “aralkyl” include benzyl, 2-phenylethyl, 3-phenylpropyl, 9-fluorenyl, benzhydryl, and trityl groups.
  • As used herein, “cycloalkyl” refers to a cyclic, bicyclic, tricyclic, or polycyclic non-aromatic hydrocarbon groups having 3 to 12 carbons. Examples of cycloalkyl moieties include, but are not limited to, cyclopropyl, cyclopentyl, and cyclohexyl.
  • As used herein, “heterocyclyl” refers to a monovalent radical of a heterocyclic ring system. Representative heterocyclyls include, without limitation, tetrahydrofuranyl, tetrahydrothienyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, pyrrolinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, and morpholinyl.
  • As used herein, “heteroaryl” refers to a monovalent radical of a heteroaromatic ring system. Examples of heteroaryl moieties include, but are not limited to, imidazolyl, oxazolyl, thiazolyl, triazolyl, pyrrolyl, furanyl, indolyl, thiophenyl pyrazolyl, pyridinyl, pyrazinyl, pyridazinyl, pyrimidinyl, indolizinyl, purinyl, naphthyridinyl, quinolyl, and pteridinyl.
  • Phosphate Backbone Modifications
  • The Phosphate Group
  • In an embodiment, the phosphate group of a modified nucleotide can be modified by replacing one or more of the oxygens with a different substituent. Further, the modified nucleotide, e.g., modified nucleotide present in a modified nucleic acid, can include the wholesale replacement of an unmodified phosphate moiety with a modified phosphate as described herein. In an embodiment, the modification of the phosphate backbone can include alterations that result in either an uncharged linker or a charged linker with unsymmetrical charge distribution.
  • Examples of modified phosphate groups include, phosphorothioate, phosphoroselenates, borano phosphates, borano phosphate esters, hydrogen phosphonates, phosphoroamidates, alkyl or aryl phosphonates and phosphotriesters. In an embodiment, one of the non-bridging phosphate oxygen atoms in the phosphate backbone moiety can be replaced by any of the following groups: sulfur (S), selenium (Se), BR3 (wherein R can be, e.g., hydrogen, alkyl, or aryl), C (e.g., an alkyl group, an aryl group, and the like), H, NR2 (wherein R can be, e.g., hydrogen, alkyl, or aryl), or OR (wherein R can be, e.g., alkyl or aryl). The phosphorous atom in an unmodified phosphate group is achiral. However, replacement of one of the non-bridging oxygens with one of the above atoms or groups of atoms can render the phosphorous atom chiral; that is to say that a phosphorous atom in a phosphate group modified in this way is a stereogenic center. The stereogenic phosphorous atom can possess either the “R” configuration (herein Rp) or the “S” configuration (herein Sp).
  • Phosphorodithioates have both non-bridging oxygens replaced by sulfur. The phosphorus center in the phosphorodithioates is achiral which precludes the formation of oligoribonucleotide diastereomers. In an embodiment, modifications to one or both non-bridging oxygens can also include the replacement of the non-bridging oxygens with a group independently selected from S, Se, B, C, H, N, and OR (R can be, e.g., alkyl or aryl).
  • The phosphate linker can also be modified by replacement of a bridging oxygen, (i.e., the oxygen that links the phosphate to the nucleoside), with nitrogen (bridged phosphoroamidates), sulfur (bridged phosphorothioates) and carbon (bridged methylenephosphonates). The replacement can occur at either linking oxygen or at both of the linking oxygens.
  • Replacement of the Phosphate Group
  • The phosphate group can be replaced by non-phosphorus containing connectors. In an embodiment, the charge phosphate group can be replaced by a neutral moiety.
  • Examples of moieties which can replace the phosphate group can include, without limitation, e.g., methyl phosphonate, hydroxylamino, siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo, methylenedimethylhydrazo and methyleneoxymethylimino.
  • Replacement of the Ribophosphate Backbone
  • Scaffolds that can mimic nucleic acids can also be constructed wherein the phosphate linker and ribose sugar are replaced by nuclease resistant nucleoside or nucleotide surrogates. In an embodiment, the nucleobases can be tethered by a surrogate backbone. Examples can include, without limitation, the morpholino, cyclobutyl, pyrrolidine and peptide nucleic acid (PNA) nucleoside surrogates.
  • Sugar Modifications
  • The modified nucleosides and modified nucleotides can include one or more modifications to the sugar group. For example, the 2′ hydroxyl group (OH) can be modified or replaced with a number of different “oxy” or “deoxy” substituents. In an embodiment, modifications to the 2′ hydroxyl group can enhance the stability of the nucleic acid since the hydroxyl can no longer be deprotonated to form a 2′-alkoxide ion. The 2′-alkoxide can catalyze degradation by intramolecular nucleophilic attack on the linker phosphorus atom.
  • Examples of “oxy”-2′ hydroxyl group modifications can include alkoxy or aryloxy (OR, wherein “R” can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or a sugar); polyethyleneglycols (PEG), O(CH2CH2O)nCH2CH2OR wherein R can be, e.g., H or optionally substituted alkyl, and n can be an integer from 0 to 20 (e.g., from 0 to 4, from 0 to 8, from 0 to 10, from 0 to 16, from 1 to 4, from 1 to 8, from 1 to 10, from 1 to 16, from 1 to 20, from 2 to 4, from 2 to 8, from 2 to 10, from 2 to 16, from 2 to 20, from 4 to 8, from 4 to 10, from 4 to 16, and from 4 to 20). In an embodiment, the “oxy”-2′ hydroxyl group modification can include “locked” nucleic acids (LNA) in which the 2′ hydroxyl can be connected, e.g., by a C1-6 alkylene or C1-6 heteroalkylene bridge, to the 4′ carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy, O(CH2)n-amino, (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino). In an embodiment, the “oxy”-2′ hydroxyl group modification can include the methoxyethyl group (MOE), (OCH2CH2OCH3, e.g., a PEG derivative).
  • “Deoxy” modifications can include hydrogen (i.e. deoxyribose sugars, e.g., at the overhang portions of partially ds RNA); halo (e.g., bromo, chloro, fluoro, or iodo); amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); NH(CH2CH2NH)nCH2CH2-amino (wherein amino can be, e.g., as described herein), —NHC(O)R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), cyano; mercapto; alkyl-thio-alkyl; thioalkoxy; and alkyl, cycloalkyl, aryl, alkenyl and alkynyl, which may be optionally substituted with e.g., an amino as described herein.
  • The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified nucleic acid can include nucleotides containing e.g., arabinose, as the sugar. The nucleotide “monomer” can have an alpha linkage at the 1′ position on the sugar, e.g., alpha-nucleosides. The modified nucleic acids can also include “abasic” sugars, which lack a nucleobase at C-1′. These abasic sugars can also be further modified at one or more of the constituent sugar atoms. The modified nucleic acids can also include one or more sugars that are in the L form, e.g. L-nucleosides.
  • Generally, RNA includes the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified nucleosides and modified nucleotides can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). In an embodiment, the modified nucleotides can include multicyclic forms (e.g., tricyclo; and “unlocked” forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), threose nucleic acid (TNA, where ribose is replaced with α-L-threofuranosyl-(3′→2′)).
  • Modifications on the Nucleobase
  • The modified nucleosides and modified nucleotides described herein, which can be incorporated into a modified nucleic acid, can include a modified nucleobase. Examples of nucleobases include, but are not limited to, adenine (A), guanine (G), cytosine (C), and uracil (U). These nucleobases can be modified or wholly replaced to provide modified nucleosides and modified nucleotides that can be incorporated into modified nucleic acids. The nucleobase of the nucleotide can be independently selected from a purine, a pyrimidine, a purine or pyrimidine analog. In an embodiment, the nucleobase can include, for example, naturally-occurring and synthetic derivatives of a base.
  • Uracil
  • In an embodiment, the modified nucleobase is a modified uracil. Exemplary nucleobases and nucleosides having a modified uracil include without limitation pseudouridine (ψ), pyridin-4-one ribonucleoside, 5-aza-uridine, 6-aza-uridine, 2-thio-5-aza-uridine, 2-thio-uridine (s2U), 4-thio-uridine (s4U), 4-thio-pseudouridine, 2-thio-pseudouridine, 5-hydroxy-uridine (ho5U), 5-aminoallyl-uridine, 5-halo-uridine (e.g., 5-iodo-uridine or 5-bromo-uridine), 3-methyl-uridine (m3U), 5-methoxy-uridine (mo5U), uridine 5-oxyacetic acid (cmo5U), uridine 5-oxyacetic acid methyl ester (memo5U), 5-carboxymethyl-uridine (cm5U), 1-carboxymethyl-pseudouridine, 5-carboxyhydroxymethyl-uridine (chm5U), 5-carboxyhydroxymethyl-uridine methyl ester (mchm5U), 5-methoxycarbonylmethyl-uridine (mcm5U), 5-methoxycarbonylmethyl-2-thio-uridine (mcm5s2U), 5-aminomethyl-2-thio-uridine (nm5s2U), 5-methylaminomethyl-uridine (mnm5U), 5-methylaminomethyl-2-thio-uridine (mnm5s2U), 5-methylaminomethyl-2-seleno-uridine (mnm5se2U), 5-carbamoylmethyl-uridine (ncm5U), 5-carboxymethylaminomethyl-uridine (cmnm5U), 5-carboxymethylaminomethyl-2-thio-uridine (cmnm5s2U), 5-propynyl-uridine, 1-propynyl-pseudouridine, 5-taurinomethyl-uridine (τCm5U), 1-taurinomethyl-pseudouridine, 5-taurinomethyl-2-thio-uridine(τm5s2U), 1-taurinomethyl-4-thio-pseudouridine, 5-methyl-uridine (m5U, i.e., having the nucleobase deoxythymine), 1-methyl-pseudouridine (m1ψ), 5-methyl-2-thio-uridine (m5s2U), 1-methyl-4-thio-pseudouridine (m1s4ψ), 4-thio-1-methyl-pseudouridine, 3-methyl-pseudouridine (m3ψ), 2-thio-1-methyl-pseudouridine, 1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl-1-deaza-pseudouridine, dihydrouridine (D), dihydropseudouridine, 5,6-dihydrouridine, 5-methyl-dihydrouridine (m5D), 2-thio-dihydrouridine, 2-thio-dihydropseudouridine, 2-methoxy-uridine, 2-methoxy-4-thio-uridine, 4-methoxy-pseudouridine, 4-methoxy-2-thio-pseudouridine, N1-methyl-pseudouridine, 3-(3-amino-3-carboxypropyl)uridine (acp3U), 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine (acp3ψ), 5-(isopentenylaminomethyl)uridine (inm5U), 5-(isopentenylaminomethyl)-2-thio-uridine (inm5s2U), α-thio-uridine, 2′-O-methyl-uridine (Um), 5,2′-O-dimethyl-uridine (m5Um), 2′-O-methyl-pseudouridine (Wm), 2-thio-2′-O-methyl-uridine (s2Um), 5-methoxycarbonylmethyl-2′-O-methyl-uridine (mcm5Um), 5-carbamoylmethyl-2′-O-methyl-uridine (ncm 5Um), 5-carboxymethylaminomethyl-2′-O-methyl-uridine (cmnm 5Um), 3,2′-O-dimethyl-uridine (m3Um), 5-(isopentenylaminomethyl)-2′-O-methyl-uridine (inm5Um), 1-thio-uridine, deoxythymidine, 2′-F-ara-uridine, 2′-F-uridine, 2′-OH-ara-uridine, 5-(2-carbomethoxyvinyl) uridine, 5-[3-(1-E-propenylamino)uridine, pyrazolo[3,4-d]pyrimidines, xanthine, and hypoxanthine.
  • Cytosine
  • In an embodiment, the modified nucleobase is a modified cytosine. Exemplary nucleobases and nucleosides having a modified cytosine include without limitation 5-aza-cytidine, 6-aza-cytidine, pseudoisocytidine, 3-methyl-cytidine (m3C), N4-acetyl-cytidine (act), 5-formyl-cytidine (f5C), N4-methyl-cytidine (m4C), 5-methyl-cytidine (m5C), 5-halo-cytidine (e.g., 5-iodo-cytidine), 5-hydroxymethyl-cytidine (hm5C), 1-methyl-pseudoisocytidine, pyrrolo-cytidine, pyrrolo-pseudoisocytidine, 2-thio-cytidine (s2C), 2-thio-5-methyl-cytidine, 4-thio-pseudoisocytidine, 4-thio-1-methyl-pseudoisocytidine, 4-thio-1-methyl-1-deaza-pseudoisocytidine, 1-methyl-1-deaza-pseudoisocytidine, zebularine, 5-aza-zebularine, 5-methyl-zebularine, 5-aza-2-thio-zebularine, 2-thio-zebularine, 2-methoxy-cytidine, 2-methoxy-5-methyl-cytidine, 4-methoxy-pseudoisocytidine, 4-methoxy-1-methyl-pseudoisocytidine, lysidine (k2C), α-thio-cytidine, 2′-O-methyl-cytidine (Cm), 5,2′-O-dimethyl-cytidine (m5Cm), N4-acetyl-2′-O-methyl-cytidine (ac4Cm), N4,2′-O-dimethyl-cytidine (m4Cm), 5-formyl-2′-O-methyl-cytidine (f 5Cm), N4,N4,2′-O-trimethyl-cytidine (m4 2Cm), 1-thio-cytidine, 2′-F-ara-cytidine, 2′-F-cytidine, and 2′-OH-ara-cytidine.
  • Adenine
  • In an embodiment, the modified nucleobase is a modified adenine. Exemplary nucleobases and nucleosides having a modified adenine include without limitation 2-amino-purine, 2,6-diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo-purine (e.g., 6-chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenosine, 7-deaza-adenosine, 7-deaza-8-aza-adenosine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6-diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1-methyl-adenosine (m1A), 2-methyl-adenosine (m2A), N6-methyl-adenosine (m6A), 2-methylthio-N6-methyl-adenosine (ms2m6A), N6-isopentenyl-adenosine (i6A), 2-methylthio-N6-isopentenyl-adenosine (ms2i6A), N6-(cis-hydroxyisopentenyl)adenosine (io6A), 2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine (ms2io6A), N6-glycinylcarbamoyl-adenosine (g6A), N6-threonylcarbamoyl-adenosine (t6A), N6-methyl-N6-threonylcarbamoyl-adenosine (m6t6A), 2-methylthio-N6-threonylcarbamoyl-adenosine (ms2g6A), N6,N6-dimethyl-adenosine (m6 2A), N6-hydroxynorvalylcarbamoyl-adenosine (hn6A), 2-methylthio-N6-hydroxynorvalylcarbamoyl-adenosine (ms2hn6A), N6-acetyl-adenosine (ac6A), 7-methyl-adenosine, 2-methylthio-adenosine, 2-methoxy-adenosine, α-thio-adenosine, 2′-O-methyl-adenosine (Am), N6,2′-O-dimethyl-adenosine (m6Am), N6-Methyl-2′-deoxyadenosine, N6,N6,2′-O-trimethyl-adenosine (m6 2Am), 1,2′-O-dimethyl-adenosine (m1Am), 2′-O-ribosyladenosine (phosphate) (Ar(p)), 2-amino-N6-methyl-purine, 1-thio-adenosine, 8-azido-adenosine, 2′-F-ara-adenosine, 2′-F-adenosine, 2′-OH-ara-adenosine, and N6-(19-amino-pentaoxanonadecyl)-adenosine.
  • Guanine
  • In an embodiment, the modified nucleobase is a modified guanine. Exemplary nucleobases and nucleosides having a modified guanine include without limitation inosine (I), 1-methyl-inosine (m1I), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW), hydroxywybutosine (OHyW), undermodified hydroxywybutosine (OHyW*), 7-deaza-guanosine, queuosine (Q), epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl-queuosine (manQ), 7-cyano-7-deaza-guanosine (preQ0), 7-aminomethyl-7-deaza-guanosine (preQ1), archaeosine (G+), 7-deaza-8-aza-guanosine, 6-thio-guanosine, 6-thio-7-deaza-guanosine, 6-thio-7-deaza-8-aza-guanosine, 7-methyl-guanosine (m7G), 6-thio-7-methyl-guanosine, 7-methyl-inosine, 6-methoxy-guanosine, 1-methyl-guanosine (m′G), N2-methyl-guanosine (m2G), N2,N2-dimethyl-guanosine (m2 2G), N2,7-dimethyl-guanosine (m2,7G), N2, N2,7-dimethyl-guanosine (m2,2,7G), 8-oxo-guanosine, 7-methyl-8-oxo-guanosine, 1-methyl-6- thio-guanosine, N2-methyl-6-thio-guanosine, N2,N2-dimethyl-6-thio-guanosine, α-thio-guanosine, 2′-O-methyl-guanosine (Gm), N2-methyl-2′-O-methyl-guanosine (m2Gm), N2,N2-dimethyl-2′-O-methyl-guanosine (m2 2Gm), 1-methyl-2′-O-methyl-guanosine (m′Gm), N2,7-dimethyl-2′-O-methyl-guanosine (m2,7Gm), 2′-O-methyl-inosine (Im), 1,2′-O-dimethyl-inosine (m′Im), O6-phenyl-2′-deoxyinosine, 2′-O-ribosylguanosine (phosphate) (Gr(p)), 1-thio-guanosine, O6-methyl-guanosine, O6-Methyl-2′-deoxyguanosine, 2′-F-ara-guanosine, and 2′-F-guanosine.
  • Exemplary Modified gRNAs
  • In some embodiments, the modified nucleic acids can be modified gRNAs. It is to be understood that any of the gRNAs described herein can be modified in accordance with this section, including any gRNA that comprises a targeting domain from Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
  • As discussed above, transiently expressed or delivered nucleic acids can be prone to degradation by, e.g., cellular nucleases. Accordingly, in one aspect the modified gRNAs described herein can contain one or more modified nucleosides or nucleotides which introduce stability toward nucleases. While not wishing to be bound by theory it is also believed that certain modified gRNAs described herein can exhibit a reduced innate immune response when introduced into a population of cells, particularly the cells of the present invention. As noted above, the term “innate immune response” includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death.
  • While some of the exemplary modification discussed in this section may be included at any position within the gRNA sequence, in some embodiments, a gRNA comprises a modification at or near its 5′ end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 5′ end). In some embodiments, a gRNA comprises a modification at or near its 3′ end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 3′ end). In some embodiments, a gRNA comprises both a modification at or near its 5′ end and a modification at or near its 3′ end.
  • In an embodiment, the 5′ end of a gRNA is modified by the inclusion of a eukaryotic mRNA cap structure or cap analog (e.g., a G(5′)ppp(5′)G cap analog, a m7G(5′)ppp(5′)G cap analog, or a 3′-O-Me-m7G(5′)ppp(5′)G anti reverse cap analog (ARCA)). The cap or cap analog can be included during either chemical synthesis or in vitro transcription of the gRNA.
  • In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5′ triphosphate group.
  • In an embodiment, the 3′ end of a gRNA is modified by the addition of one or more (e.g., 25-200) adenine (A) residues. The polyA tract can be contained in the nucleic acid (e.g., plasmid, PCR product, viral genome) encoding the gRNA, or can be added to the gRNA during chemical synthesis, or following in vitro transcription using a polyadenosine polymerase (e.g., E. coli Poly(A)Polymerase).
  • In an embodiment, in vitro transcribed gRNA contains both a 5′ cap structure or cap analog and a 3′ polyA tract. In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5′ triphosphate group and comprises a 3′ polyA tract.
  • In some embodiments, gRNAs can be modified at a 3′ terminal U ribose. For example, the two terminal hydroxyl groups of the U ribose can be oxidized to aldehyde groups and a concomitant opening of the ribose ring to afford a modified nucleoside as shown below:
  • Figure US20230026726A1-20230126-C00005
  • wherein “U” can be an unmodified or modified uridine.
  • In another embodiment, the 3′ terminal U can be modified with a 2′3′ cyclic phosphate as shown below:
  • Figure US20230026726A1-20230126-C00006
  • wherein “U” can be an unmodified or modified uridine.
  • In some embodiments, the gRNA molecules may contain 3′ nucleotides which can be stabilized against degradation, e.g., by incorporating one or more of the modified nucleotides described herein. In this embodiment, e.g., uridines can be replaced with modified uridines, e.g., 5-(2-amino)propyl uridine, and 5-bromo uridine, or with any of the modified uridines described herein; adenosines and guanosines can be replaced with modified adenosines and guanosines, e.g., with modifications at the 8-position, e.g., 8-bromo guanosine, or with any of the modified adenosines or guanosines described herein.
  • In some embodiments, sugar-modified ribonucleotides can be incorporated into the gRNA, e.g., wherein the 2′ OH-group is replaced by a group selected from H, —OR, —R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), halo, —SH, —SR (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); or cyano (—CN). In some embodiments, the phosphate backbone can be modified as described herein, e.g., with a phosphothioate group. In some embodiments, one or more of the nucleotides of the gRNA can each independently be a modified or unmodified nucleotide including, but not limited to 2′-sugar modified, such as, 2′-O-methyl, 2′-O-methoxyethyl, or 2′-Fluoro modified including, e.g., 2′-F or 2′-O-methyl, adenosine (A), 2′-F or 2′-O-methyl, cytidine (C), 2′-F or 2′-O-methyl, uridine (U), 2′-F or 2′-O-methyl, thymidine (T), 2′-F or 2′-O-methyl, guanosine (G), 2′-O-methoxyethyl-5-methyluridine (Teo), 2′-O-methoxyethyladenosine (Aeo), 2′-O-methoxyethyl-5-methylcytidine (m5Ceo), and any combinations thereof.
  • In some embodiments, a gRNA can include “locked” nucleic acids (LNA) in which the 2′ OH-group can be connected, e.g., by a C1-6 alkylene or C1-6 heteroalkylene bridge, to the 4′ carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy or O(CH2)n-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino).
  • In some embodiments, a gRNA can include a modified nucleotide which is multicyclic (e.g., tricyclo; and “unlocked” forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), or threose nucleic acid (TNA, where ribose is replaced with α-L-threofuranosyl-(3′→2′)).
  • Generally, gRNA molecules include the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified gRNAs can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). Although the majority of sugar analog alterations are localized to the 2′ position, other sites are amenable to modification, including the 4′ position. In an embodiment, a gRNA comprises a 4′-S, 4′-Se or a 4′-C-aminomethyl-2′-O-Me modification.
  • In some embodiments, deaza nucleotides, e.g., 7-deaza-adenosine, can be incorporated into the gRNA. In some embodiments, O- and N-alkylated nucleotides, e.g., N6-methyl adenosine, can be incorporated into the gRNA. In some embodiments, one or more or all of the nucleotides in a gRNA molecule are deoxynucleotides.
  • miRNA Binding Sites
  • microRNAs (or miRNAs) are naturally occurring cellular 19-25 nucleotide long noncoding RNAs. They bind to nucleic acid molecules having an appropriate miRNA binding site, e.g., in the 3′ UTR of an mRNA, and down-regulate gene expression. While not wishing to be bound by theory it is believed that the down regulation is either by reducing nucleic acid molecule stability or by inhibiting translation. An RNA species disclosed herein, e.g., an mRNA encoding Cas9 can comprise an miRNA binding site, e.g., in its 3′UTR. The miRNA binding site can be selected to promote down regulation of expression is a selected cell type. By way of example, the incorporation of a binding site for miR-122, a microRNA abundant in liver, can inhibit the expression of the gene of interest in the liver.
  • EXAMPLES
  • The following Examples are merely illustrative and are not intended to limit the scope or content of the invention in any way.
  • Example 1: Cloning and Initial Screening of gRNAs
  • The suitability of candidate gRNAs can be evaluated as described in this example. Although described for a chimeric gRNA, the approach can also be used to evaluate modular gRNAs.
  • Cloning gRNAs into Vectors
  • For each gRNA, a pair of overlapping oligonucleotides is designed and obtained. Oligonucleotides are annealed and ligated into a digested vector backbone containing an upstream U6 promoter and the remaining sequence of a long chimeric gRNA. Plasmid is sequence-verified and prepped to generate sufficient amounts of transfection-quality DNA. Alternate promoters maybe used to drive in vivo transcription (e.g. H1 promoter) or for in vitro transcription (e.g., a T7 promoter).
  • Cloning gRNAs in Linear dsDNA Molecule (STITCHR)
  • For each gRNA, a single oligonucleotide is designed and obtained. The U6 promoter and the gRNA scaffold (e.g. including everything except the targeting domain, e.g., including sequences derived from the crRNA and tracrRNA, e.g., including a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain) are separately PCR amplified and purified as dsDNA molecules. The gRNA-specific oligonucleotide is used in a PCR reaction to stitch together the U6 and the gRNA scaffold, linked by the targeting domain specified in the oligonucleotide. Resulting dsDNA molecule (STITCHR product) is purified for transfection. Alternate promoters may be used to drive in vivo transcription (e.g., H1 promoter) or for in vitro transcription (e.g., T7 promoter). Any gRNA scaffold may be used to create gRNAs compatible with Cas9s from any bacterial species.
  • Initial gRNA Screen
  • Each gRNA to be tested is transfected, along with a plasmid expressing Cas9 and a small amount of a GFP-expressing plasmid into human cells. In preliminary experiments, these cells can be immortalized human cell lines such as 293T, K562 or U2OS. Alternatively, primary human cells may be used. In this case, cells may be relevant to the eventual therapeutic cell target (for example, an erythroid cell). The use of primary cells similar to the potential therapeutic target cell population may provide important information on gene targeting rates in the context of endogenous chromatin and gene expression.
  • Transfection may be performed using lipid transfection (such as Lipofectamine or Fugene) or by electroporation (such as Lonza Nucleofection). Following transfection, GFP expression can be determined either by fluorescence microscopy or by flow cytometry to confirm consistent and high levels of transfection. These preliminary transfections can comprise different gRNAs and different targeting approaches (17-mers, 20-mers, nuclease, dual-nickase, etc.) to determine which gRNAs/combinations of gRNAs give the greatest activity.
  • Efficiency of cleavage with each gRNA may be assessed by measuring NHEJ-induced indel formation at the target locus by a T7E1-type assay or by sequencing. Alternatively, other mismatch-sensitive enzymes, such as Cell/Surveyor nuclease, may also be used.
  • For the T7E1 assay, PCR amplicons are approximately 500-700 bp with the intended cut site placed asymmetrically in the amplicon. Following amplification, purification and size-verification of PCR products, DNA is denatured and re-hybridized by heating to 95° C. and then slowly cooling. Hybridized PCR products are then digested with T7 Endonuclease I (or other mismatch-sensitive enzyme) which recognizes and cleaves non-perfectly matched DNA. If indels are present in the original template DNA, when the amplicons are denatured and re-annealed, this results in the hybridization of DNA strands harboring different indels and therefore lead to double-stranded DNA that is not perfectly matched. Digestion products may be visualized by gel electrophoresis or by capillary electrophoresis. The fraction of DNA that is cleaved (density of cleavage products divided by the density of cleaved and uncleaved) may be used to estimate a percent NHEJ using the following equation: % NHEJ=(1−(1−fraction cleaved)½). The T7E1 assay is sensitive down to about 2-5% NHEJ.
  • Sequencing may be used instead of, or in addition to, the T7E1 assay. For Sanger sequencing, purified PCR amplicons are cloned into a plasmid backbone, transformed, miniprepped and sequenced with a single primer. Sanger sequencing may be used for determining the exact nature of indels after determining the NHEJ rate by T7E1.
  • Sequencing may also be performed using next generation sequencing techniques. When using next generation sequencing, amplicons may be 300-500 bp with the intended cut site placed asymmetrically. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low NHEJ rates.
  • Example 2: Assessment of Gene Targeting by NHEJ
  • The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
  • Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency to generate the desired mutations (either knockout of a target gene or removal of a target sequence motif) may be determined by sequencing. For Sanger sequencing, PCR amplicons may be 500-700 bp long. For next generation sequencing, PCR amplicons may be 300-500 bp long. If the goal is to knockout gene function, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced indels that result in a frameshift or large deletion or insertion that would be expected to destroy gene function. If the goal is to remove a specific sequence motif, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced deletions that span this sequence.
  • Example 3: Assessment of Gene Targeting by HDR
  • The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
  • Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency can be determined by several methods.
  • Determination of gene targeting frequency involves measuring the percentage of alleles that have undergone homologous directed repair (HDR) with the exogenously provided donor template or endogenous genomic donor sequence and which therefore have incorporated the desired correction. If the desired HDR event creates or destroys a restriction enzyme site, the frequency of gene targeting may be determined by a RFLP assay. If no restriction site is created or destroyed, sequencing may be used to determine gene targeting frequency. If a RFLP assay is used, sequencing may still be used to verify the desired HDR event and ensure that no other mutations are present. If an exogenously provided donor template is employed, at least one of the primers is placed in the endogenous gene sequence outside of the region included in the homology arms, which prevents amplification of donor template still present in the cells. Therefore, the length of the homology arms present in the donor template may affect the length of the PCR amplicon. PCR amplicons can either span the entire donor region (both primers placed outside the homology arms) or they can span only part of the donor region and a single junction between donor and endogenous DNA (one internal and one external primer). If the amplicons span less than the entire donor region, two different PCRs should be used to amplify and sequence both the 5′ and the 3′ junction.
  • If the PCR amplicon is short (less than 600 bp) it is possible to use next generation sequencing. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low gene targeting rates.
  • If the PCR amplicon is too long for next generation sequencing, Sanger sequencing can be performed. For Sanger sequencing, purified PCR amplicons will be cloned into a plasmid backbone (for example, TOPO cloned using the LifeTech Zero Blunt® TOPO® cloning kit), transformed, miniprepped and sequenced.
  • The same or similar assays described above can be used to measure the percentage of alleles that have undergone HDR with endogenous genomic donor sequence and which therefore have incorporated the desired correction.
  • Example 4: Screening of gRNAs for Targeting BCL11A
  • In order to identify gRNAs with the highest on target NHEJ efficiency, thirty exemplary S. pyogenes gRNAs were selected for testing (Table 31). The gRNAs tested target three different regions of the BCL11A locus—5′ of a red blood cell enhancer, 3′ of a red blood cell enhancer and downstream of the ATG start codon in exon 2 (specified in Table 31).
  • TABLE 31
    gRNA Name Targeting Sequence Size Gene Region SEQ ID NO
    BCL11A-2981W GUGCUACUUAUACAAUUCAC 20 3′ of enhancer 16261
    BCL11A-2982W GAAAAUACUUACUGUACUGC 20 3′ of enhancer 16262
    BCL11A-2983W GGCUGUUUUGGAAUGUAGAG 20 5′ of enhancer 16263
    BCL11A-2984W AUUCACUGGAAACCCUGUUA 20 3′ of enhancer 16264
    BCL11A-2985W UACUGUACUGCAGGGGAAUU 20 3′ of enhancer 16265
    BCL11A-2986W AAACUAUUUACAGCCAUAAC 20 3′ of enhancer 16266
    BCL11A-2987W AAAUACUUACUGUACUGCAG 20 3′ of enhancer 16267
    BCL11A-2988W CUAUUUACAGCCAUAAC 17 3′ of enhancer 16268
    BCL11A-2989W CUACUUAUACAAUUCAC 17 3′ of enhancer 16269
    BCL11A-2990W CACUGGAAACCCUGUUA 17 3′ of enhancer 16270
    BCL11A-2991W UACUUACUGUACUGCAG 17 3′ of enhancer 16271
    BCL11A-2992W UGUACUGCAGGGGAAUU 17 3′ of enhancer 16272
    BCL11A-2993W AAUACUUACUGUACUGC 17 3′of enhancer 16273
    BCL11A-2994W AUACUUACUGUACUGCA 17 3′ of enhancer 16274
    BCL11A-2995W GAAUGUAGAGAGGCAGA 17 5′ of enhancer 16275
    BCL11A-2996W GGAAUGUAGAGAGGCAG 17 5′ of enhancer 16276
    BCL11A-2997W GUAAGUAUUUUCUUUCAUUG 20 3′ of enhancer 16277
    BCL11A-2998W GUAAUUAAGAAAGCAGUGUA 20 5′ of enhancer 16278
    BCL11A-2999W GUAUUUUCUUUCAUUGG 17 3′ of enhancer 16279
    BCL11A-32W UGGCAUCCAGGUCACGCCAG 20 Exon 2 16280
    BCL11A-40W GAUGCUUUUUUCAUCUCGAU 20 Exon 2 16281
    BCL11A-30W GCAUCCAAUCCCGUGGAGGU 20 Exon 2 16282
    BCL11A-42W UUUUCAUCUCGAUUGGUGAA 20 Exon 2 16283
    BCL11A-24W CCAGAUGAACUUCCCAUUGG 20 Exon 2 16284
    BCL11A-53W AGGAGGUCAUGAUCCCCUUC 20 Exon 2 16285
    BCL11A-79W CAUCCAGGUCACGCCAG 17 Exon 2 16286
    BCL11A-90W GCUUUUUUCAUCUCGAU 17 Exon 2 16287
    BCL11A-77W UCCAAUCCCGUGGAGGU 17 Exon 2 16288
    BCL11A-92W UCAUCUCGAUUGGUGAA 17 Exon 2 16289
    BCL11A-71W GAUGAACUUCCCAUUGG 17 Exon 2 16290
  • A DNA template comprised of an exemplary gRNA (including the target region and the S. pyogenes TRACR sequence) under the control of a U6 promoter was generated by a PCR StitchR reaction. This DNA template was subsequently transfected into 293 cells using Lipofectamine 3000 along with a DNA plasmid encoding the S. pyogenes Cas9 downstream of a CMV promoter. Genomic DNA was isolated from the cells 48-72 hours post transfection. To determine the rate of modification at the BCL11A locus, the target region was amplified using a locus PCR with the primers listed in Table 32.
  • TABLE 32
    Primer Sequence Exon
    TGCCTACATCTGATTCAGTGAGG (SEQ ID NO: 16291) BCL11A exon 2 5′ primer
    TGCCTCATTGACAAATTTGCTC (SEQ ID NO: 16292) BCL11A exon 2 3′ primer
    AGACCGTCTCTTTGGTGCAG (SEQ ID NO: 16293) BCL11A 5′ enhancer 5′ primer
    GCAGTGGCTTTAGGCTGTTT (SEQ ID NO: 16294) BCL11A 5′ enhancer 3′ primer
    GTGTGATCTCGGCTCACCAC (SEQ ID NO: 16295) BCL11A 3′ enhancer 5′ primer
    CCCTGACTTTGGAGCTCAGC (SEQ ID NO: 16296) BCL11A 3′ enhancer 3′ primer
  • After PCR amplification, a T7E1-directed mismatch cleavage assay was performed on the PCR product. Briefly, this assay involves melting the PCR product followed by a re-annealing step. If gene modification has occurred, there will exist double stranded products that are not perfect matches due to some frequency of insertions or deletions. These double stranded products are sensitive to cleavage by a T7 endonuclease 1 enzyme at the site of mismatch. Therefore, the efficiency of cutting by the Cas9/gRNA complex was determined by analyzing the amount of T7E1 cleavage. The formula that was used to provide a measure of % NHEJ from the T7E1 cutting is the following: 100*(1-(1-(fraction cleaved)){circumflex over ( )}0.5). The results of this analysis are shown in FIG. 11 . The top performing gRNAs in this assay were BCL11A-2981, BCL11A-2983, BCL11A-2995, BCL11A-32, BCL11A-30, and BCL11A-71.
  • Example 5: Deletion of the Erythroid Enhancer Elements Using Two gRNAs Flanking the Sequence
  • In order to test whether the erythroid enhancer sequence can be deleted using a two gRNA approach, two pairs of gRNAs were tested in 293 cells. Pair number 1 comprised BCL11A-2983W and BCL11A-2981W while Pair number 2 comprised BCL11A-2995W and BCL11A-2984W. In this example, a plasmid encoding S. pyogenes Cas9 downstream of a CMV promoter was delivered with either gRNA pair 1 or gRNA pair 2. The gRNAs were delivered as separate STITCHR products with each template comprising the U6 promoter, gRNA target sequence and S. pyogenes TRACR sequence. The DNA templates were delivered to 293 cells using lipid transfection (Lipofectamine 3000, Life Technologies). 72 hours post transfection, the cells were harvested and gDNA was isolated. To detect the deletion of the enhancer region of BCL11A, PCR primers flanking the enhancer sequences were used to amplify the deletion event. The PCR product was TOPO cloned and sequenced by Sanger sequencing. The results of these analyses are presented in FIG. 12A-13B. As shown in FIG. 12A-13B, the deletion for both gRNA pairs that were delivered to the 293 cells were detected.
  • Example 6: Gene Targeting of the HBB Locus by CRISPR/Cas9 to Investigate Repair Pathway Choice in Response to Different Types of DNA Lesions
  • The CRISPR/Cas9 system was used to target the human HBB gene in the region of the sickle cell anemia-causing mutation.
  • To examine how the nature of the targeted break affects the frequency of different DNA repair outcomes, blunt double-strand breaks, single-strand nicks, and dual-nicks in which the nicks are placed on opposite strands and leave either 3′ or 5′ overhangs of varying lengths, were introduced by utilizing the wild type Cas9 nuclease, as well as two different Cas9 nickases. Several different DNA repair outcomes including indel mutations resulting from non-homologous end-joining, homology-dependent repair (HDR) using the donor as a template, and HDR using the closely related HBD gene as an endogenous template, were characterized using either single-strand oligonucleotide (ssODN) or plasmid DNA donors. The frequency of these various repair outcomes under different conditions offer insight into the mechanisms of DNA repair and how it is impacted by the nature of the DNA break. The data also indicates a therapeutic approach in which correction of the sickle-cell mutation is efficiently mediated through HDR with either a donor template or with the HBD gene.
  • In this study different gRNA for the HBB region that surrounds the nucleotides encoding the amino acid most commonly mutated in sickle cell disease had been tested in 293T cells with wild type Cas9 molecule. The gRNAs that induced similar high rates of NHEJ and had PAMs facing in opposite orientations were selected to test as pairs with Cas9 D10A and Cas9 N863A nickases.
  • As shown in FIG. 14 , the gRNA pair 8/15 (“8gRNA”/“15gRNA” pair) was selected as one of the best pairs of gRNA. “8gRNA” has the targeting domain sequence of GUAACGGCAGACUUCUCCUC (SEQ ID NO: 388) and “15gRNA” has the targeting domain sequence of AAGGUGAACGUGGAUGAAGU (SEQ ID NO: 387). This pair of gRNAs in combination with the mutant Cas9 D10A would generate a 5′ overhang of 47 bp, and in combination with the mutant N863A would generate a 3′ overhang of 47 bp.
  • In this Example, U20S cells were electroporated with 200 ng of each gRNA and 750 ng of plasmid that encodes wild type Cas9 or mutant Cas9. Cells were collected 6 days after electroporation and genomic DNA was extracted. PCR amplification of the HBB locus was performed and subcloned into a Topo Blunt Vector. For each condition in each experiment 96 colonies were sequenced with Sanger sequencing. In the experiments assessing HDR efficacy, cells were electroporated with 2.5 ug of single stranded oligo or double stranded oligo in addition to the gRNA and the Cas9-encoding plasmid.
  • As shown in FIG. 15 , the total percentages of all editing events detected by Sanger sequencing of the HBB locus were similar using wild type Cas9 or Cas9 nickases (D10A, N863A).
  • FIGS. 16A-16B show that a majority of the total gene editing events (about 3/4 of the total) were small deletions (<10 bp). This is consistent with the notion that wildtype Cas9 generates a blunt end which are preferentially repaired by canonical NHEJ. In contrast, deletions represented only about a quarter of the total events using either nickase (D10A or N863A). Moreover, larger deletions of ˜50 bp that can be mapped to the region between the two nickase sites were observed (FIG. 16A or 16C). The remaining gene-editing events were substantially different between the two nickases.
  • As shown in FIG. 17A, in the case of Cas9 D10A nickase which leaves a 5′ protruding end, the lesion is mostly repaired through a mechanism defined as gene conversion. In gene conversion, the HBD locus will serve as a template to repair the HBB gene. HBD is a highly similar gene (92% identity with HBB) that does not carry the sickle-cell mutation (FIG. 17B). FIG. 18 shows that the majority of the HBD sequence that got incorporated in the HBB locus was in the region between the nickase cuts. In contrast, a low frequency of gene conversion was observed when the N863 nicase was used (FIG. 17A). In the case of Cas9 N863A nickase, a majority of the gene editing events were insertions in which the inserted part was a duplication of the overhangs (FIGS. 19A-19B).
  • To test the effect that different lesions had on the engagement of HDR, a donor template was provided as a single strand oligo or as ds DNA donor. In both cases the length of the donor is approximately 170 bp with 60 bp of homology outside the nicks and with 8 mismatches (FIG. 20A). As shown in FIG. 20B, the Cas9 D10A nickase that resulted in a 5′ overhang gave a significantly higher rate of HDR, especially when using the upper stand as a single-strand oligo donor. FIG. 20C shows different forms of donors (dsDNA, upper stand, and lower strand) and there contribution to HDR.
  • In summary, Cas9 nickases (D10A and N863A) showed comparable levels of efficacy compared to wildtype Cas9. Different DNA ends engage different repair pathways. The use of a wildtype Cas9 generates a blunt end, which are preferentially repaired by canonical NHEJ. Use of a Cas9 nickase with two gRNAs generates either 3′ or 5′ overhangs, which are not suitable substrates to be repaired by canonical NHEJ but can be repaired by alternative pathways.
  • The 5′ protruding end was mostly repaired through a mechanism called gene conversion in which the HBB gene is repaired by using the HBD locus as a template. Use of nickase is advantageous to promote HDR. In the experiments in which a donor was provided, a significantly higher rate of HDR was observed using a nickase compared to the wildtype Cas9. The nature of the donor template also influences the outcome as HDR was preferentially observed when an SS Oligo was used.
  • Example 7: Assessment of Gene Targeting in Hematopoietic Stem Cells
  • Transplantation of autologous CD34+ hematopoietic stem cells (HSCs, also known as hematopoietic stem/progenitor cells or HSPCs) genetically modified to correct the Sickle Cell Disease (SCD) mutation in the human β-hemoglobin gene (HBB) would prevent deformability (sickling) after deoxygenation in the erythrocyte progeny of corrected HSCs which could ameliorate symptoms associated with SCD. Genome editing with the CRISPR/Cas9 platform precisely alters endogenous gene targets by creating an indel at the targeted cut site that can lead to knock down of gene expression at the edited locus. In this Example, genome editing in the human K562 bone marrow erythroleukemia cell line, which serve as a proxy for HSCs and which can be predictive of genome editing in HSCs, were electroporated with Cas9 mRNA and gRNA HBB-8 and gRNA HBB-15 to induce gene editing at the human HBB locus.
  • K562 cells were grown in RPMI media (Life Technologies) containing 10% fetal bovine serum (FBS). For the RNA electroporation, the Maxcyte GT device (maxcyte.com/) was used. S. pyogenes Cas9 mRNA and gRNA HBB-15 and gRNA HBB-8 were prepared by in vitro transcription using linearized plasmid DNA as templates and the Ambion mMessage mMachine® T7 Ultra Transcription kit (Life Technologies) according to the manufacturer's instructions. In this embodiment, both the Cas9 and gRNA were in vitro transcribed using a T7 polymerase. For example, a 5′ ARCA cap was added to both RNA species simultaneous to transcription while a polyA tail was added after transcription to the 3′ end of the RNA species by an E. coli polyA polymerase. Capped and tailed gRNA HBB-8 and gRNA HBB-15 were complexed at room temperature with S. pyogenes H-NLS-Cas9 protein at a molar ratio of ˜25:1 (gRNA:Cas9 protein) in a total of 30 pg RNP. Briefly, three million K562 cells were suspended in 100 μL Maxcyte EP buffer and transferred to the RNP solution (13 μL). In addition, K562 cells were electroporated with S. pyogenes Cas9 mRNA and each of the gRNA HBB-8 and gRNA HBB-15. For the mRNA/gRNA electroporation with the Maxcyte device, 10 μg of gRNA HBB-8 (or 10 μg of HBB gRNA HBB-15) were mixed with 10 μg of Cas9 mRNA. Four million K562 cells were suspended in 100 μL Maxcyte EP buffer and then transferred to the mRNA/gRNA solution (13 μL). K562 cells mixed with either RNP or RNA were electroporated with the Maxcyte GT device. At 48 hours after electroporation, K562 cells were enumerated by trypan blue exclusion and were determined to have >88% viability in the electroporated cell populations. Genomic DNA was extracted from K562 cells 48 hours after electroporation and HBB locus-specific PCR reactions were performed.
  • In order to detect indels at the HBB locus, T7E1 assays were performed on HBB locus-specific PCR products that were amplified from genomic DNA samples from electroporated K562 cells and the percentage of indels detected at the HBB locus was calculated (FIG. 21 ).
  • Co-delivery of 10 μg RNP which contains wild-type S. pyogenes Cas9 protein with HBB gRNA 8 or HBB gRNA 15 resulted in 26.8% and 16.1% indels, respectively, at the HBB locus in gDNA from K562 cells (molar ratio protein: gRNA 24:1). Co-delivery of Cas9 mRNA with gRNA HBB-8 or HBB-15 led to 66.9% and 29.5% indels at the HBB locus in gDNA from K562 cells (10 μg of each RNA/4 million cells). This example shows that delivery of Cas9 mRNA/gRNA and Cas9 RNPs leads to editing of the HBB locus in a relevant bone marrow derived hematopoietic cell line (K562 cells). Clinically, transplantation of autologous HSCs in which the HBB locus has been edited to correct the genetic mutation that causes red blood cell sickling could be used to ameliorate symptoms of SCD.
  • INCORPORATION BY REFERENCE
  • All publications, patents, and patent applications mentioned herein are hereby incorporated by reference in their entirety as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
  • EQUIVALENTS
  • Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

Claims (21)

1-189. (canceled)
190. A gRNA molecule comprising a targeting domain which is complementary with a target domain from the HBB or BCL11A gene.
191. The gRNA molecule of claim 190, wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of an SCD target point position or an SCD target knockout position.
192. The gRNA molecule of claim 190, wherein said targeting domain is configured to target an early coding region or an enhancer region of the BCL11A gene.
193. The gRNA molecule of claim 190, wherein said targeting domain is configured to target a mutation in the HBB gene.
194. The gRNA molecule of claim 190, wherein said targeting domain is configured to target the promoter region of the BCL11A gene.
195. The gRNA molecule of claim 190, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
196. A nucleic acid that comprises a nucleotide sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with an SCD target domain in the HBB gene or BCL11A gene.
197. The nucleic acid of claim 196 wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the SCD target point position or the SCD target knockout position.
198. The nucleic acid of claim 196, wherein said targeting domain is configured to target an early coding region or an enhancer region of the BCL11A gene.
199. The nucleic acid of claim 196, wherein said targeting domain is configured to target a mutation in the HBB gene.
200. The nucleic acid of claim 196, wherein said targeting domain is configured to target the promoter region of the BCL11A gene.
201. The nucleic acid of claim 196, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
202. The nucleic acid of claim 196, further comprising a sequence that encodes a Cas9 molecule.
203. A method of altering a cell comprising contacting said cell with:
(a) a gRNA molecule comprising a targeting domain which is complementary with a target domain from the HBB or BCL11A gene; and
(b) a Cas9 molecule.
204. The method of claim 203, wherein said targeting domain is configured to target an early coding region or an enhancer region of the BCL11A gene.
205. The method of claim 203, wherein said targeting domain is configured to target a mutation in the HBB gene.
206. The method of claim 203, wherein said targeting domain is configured to target the promoter region of the BCL11A gene.
207. The method of claim 203, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1D, 2A-2F, 3A-3C, 4A-4E, 5A-5E, 6A-6B, 7A-7D, 8A-8D, 9, 10A-10D, 11A-11D, 12, 13A-13D, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18C, 19A-19E, 20A-20C, 21A-21E, 22A-22E, 23A-23C, 24A-24D, 25A-25B, 26, or 31.
208. The method of claim 203, wherein said cell is selected from the group consisting of an erythroid cell, a bone marrow cell, and a stem cell.
209. The method of claim 203, wherein said contacting step is performed ex vivo.
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