WO2014150784A1 - Cell repopulated collagen matrix for soft tissue repair and regeneration - Google Patents

Abstract

The present invention provides compositions for treating soft tissue injuries comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix. Methods of making and using compositions comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix are also provided.

Description

CELL REPOPULATED COLLAGEN MATRIX FOR SOFT TISSUE REPAIR AND REGENERATION

CROSS-REFERENCE TO RELATED APPLICATIONS

[0001] This application claims benefit of priority of U.S. Provisional Application No. 61/790,412, filed March 15, 2013, the entire content of which is incorporated herein by reference.

BACKGROUND OF THE INVENTION

[0002] Injuries to soft tissues, such as skin, muscle, connective tissue, or vascular tissue, are common occurrences. In some instances, minor soft tissue injuries are able to self-repair without any outside intervention, but frequently the extent of an injury is severe enough, or the capacity of the soft tissue to self-repair is limited enough, that surgical intervention is required. Surgery to repair a soft tissue injury generally entails implanting or applying a biocompatible material that is meant to replace the missing or defective tissue (for example, using a graft to replace a torn tendon or ligament). However, even with surgical intervention, the process of repairing or reconstructing the injured soft tissue can be slow or incomplete.

[0003] Stem cells have been shown to be useful in promoting wound healing and the repair of injuries to soft tissues such as tendons and ligaments. See, e.g., Yin et al, Expert Opin. Biol. Ther. 10:689-700 (2010); Hanson et al, Plast. Reconstr. Surg. 125:510-6 (2010); and Cha and Falanga, Clin. Dermatol. 25:73-8 (2007). Stem cells have also been used to promote soft tissue reconstruction, for example using stem cell-seeded small intestinal submucosa to promote bladder reconstitution and meniscus reconstruction. Chung et al, J. Urol. 174:353-9 (2005); Tan et al, Tissue Eng. Part A 16:67-79 (2010).

BRIEF SUMMARY OF THE INVENTION

[0004] In one aspect, the present invention provides compositions for treating a soft tissue injury in a subject. In some embodiments, the composition comprises a collagen matrix and mesenchymal stem cells adhered to the collagen matrix, wherein the mesenchymal stem cells are derived from a tissue processed to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells that is seeded onto the collagen matrix, and wherein the mesenchymal stem cells are not cultured ex vivo after formation of the cell suspension and prior to seeding of the cell suspension on the collagen matrix.

[0005] In some embodiments, the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder. In some embodiments, the collagen matrix is decellularized dermis. In some embodiments, the collagen matrix is dermis from which the epidermis layer has been removed.

[0006] In some embodiments, the collagen matrix is treated to reduce immunogenicity. In some embodiments, the treated collagen matrix has at least 50% fewer endogenous cells than a corresponding untreated collaged matrix of the same type. In some embodiments, the treated collagen matrix has a DNA content that is decreased by at least 50% as compared to a corresponding untreated collaged matrix of the same type. In some embodiments, the treated collagen matrix is non-immunogenic.

[0007] In some embodiments, the treated collagen matrix retains bioactive cytokines. In some embodiments, the bioactive cytokines are selected from the group consisting of IL-4, IL-6, IL-15, IL-16, IL-18, and IL-28. In some embodiments, the treated collagen matrix retains bioactive growth factors. In some embodiments, the bioactive growth factor is platelet-derived growth factor alpha (PDGFa).

[0008] In some embodiments, the collagen matrix is human, porcine, bovine, or equine. [0009] In some embodiments, the tissue that is processed to form the cell suspension is selected from adipose tissue, muscle tissue, birth tissue, skin tissue, bone tissue, or bone marrow tissue. In some embodiments, the tissue that is processed to form the cell suspension is human tissue.

[0010] In some embodiments, the collagen matrix and the tissue that is processed to form the cell suspension are from the same species. In some embodiments, the collagen matrix and the tissue that is processed to form the cell suspension are from different species. In some embodiments, the collagen matrix and the tissue that is processed to form the cell suspension are from the same donor. In some embodiments, the collagen matrix and the tissue that is processed to form the cell suspension are from different cadaveric donors. In some embodiments, the donor is human.

[0011] In some embodiments, mesenchymal stem cells seeded on the collagen matrix express one or more of the positive MSC markers CD105, CD144, CD44, CD166, or CD90. In some embodiments, mesenchymal stem cells seeded on the collagen matrix do not express one or more of the negative MSC markers CD34 and CD1 16.

[0012] In another aspect, the present invention provides methods of treating a soft tissue injury in a subject. In some embodiments, the method comprises contacting a composition as described herein (e.g., a composition comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix, wherein the mesenchymal stem cells are derived from a tissue processed to form a cell suspension comprising mesenchymal stem cells and non- mesenchymal stem cells that is seeded onto the collagen matrix, and wherein the

mesenchymal stem cells are not cultured ex vivo after formation of the cell suspension and prior to seeding of the cell suspension on the collagen matrix) to the site of the soft tissue injury.

[0013] In some embodiments, the soft tissue injury is an injury to a tendon tissue, a ligament tissue, a meniscus tissue, a muscle tissue, a skin tissue, a bladder tissue, or a dermal tissue. In some embodiments, the soft tissue injury is a surgical wound, a trauma wound, a chronic wound, an acute wound, a deep channel wound, an exsanguinating site, or a burn.

[0014] In some embodiments, the composition is administered topically. In some embodiments, the composition is administered by surgical implantation.

[0015] In some embodiments, the subject is a human subject. In some embodiments, the subject is a veterinary subject. In some embodiments, the veterinary subject is a horse. [0016] In yet another aspect, the present invention provides methods of making a composition for treating a soft tissue injury. In some embodiments, the method comprises:

(a) digesting a tissue to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells;

(b) seeding the cell suspension onto a collagen matrix;

(c) incubating the collagen matrix seeded with the cell suspension under conditions suitable for adhering the mesenchymal stem cells to the collagen matrix; and

(d) removing the non-adherent cells from the collagen matrix.

[0017] In some embodiments, prior to step (b), the method further comprises treating the collagen matrix to reduce immunogenicity. In some embodiments, treating the collagen matrix to reduce immunogenicity comprises contacting the collagen matrix with a decellularizing agent. In some embodiments, treating the collagen matrix to reduce immunogenicity comprises removing an epidermis layer without decellularizing the collagen matrix. In some embodiments, the treated collagen matrix has at least 50% fewer endogenous cells than a corresponding untreated collaged matrix of the same type. In some embodiments, the treated collagen matrix has a DNA content that is decreased by at least 50% as compared to a corresponding untreated collaged matrix of the same type. In some embodiments, the treated collagen matrix is non-immunogenic.

[0018] In some embodiments, the method further comprises a washing step to remove the decellularizing agent. In some embodiments, the washing step is performed after

decellularization and before the cell suspension is seeded on the collagen matrix.

[0019] In some embodiments, the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder.

[0020] In some embodiments, the treated collagen matrix retains bioactive cytokines. In some embodiments, the bioactive cytokines are selected from the group consisting of IL-4, IL-6, IL-15, IL-16, IL-18, and IL-28. In some embodiments, the treated collagen matrix retains bioactive growth factors. In some embodiments, the bioactive growth factor is platelet-derived growth factor alpha (PDGFa).

[0021] In some embodiments, the collagen matrix is human, porcine, bovine, or equine.

[0022] In some embodiments, the tissue that is digested to form the cell suspension is selected from adipose tissue, muscle tissue, birth tissue, skin tissue, bone tissue, or bone marrow tissue. In some embodiments, the tissue that is digested to form the cell suspension is human tissue.

[0023] In some embodiments, the collagen matrix and the tissue that is digested to form the cell suspension are from the same species. In some embodiments, the collagen matrix and the tissue that is digested to form the cell suspension are from different species. In some embodiments, the collagen matrix and the tissue that is digested to form the cell suspension are from the same donor. In some embodiments, the collagen matrix and the tissue that is digested to form the cell suspension are from different cadaveric donors. In some embodiments, the donor is human.

DEFINITIONS

[0024] As used herein, the term "soft tissue" refers to a tissue that connects, supports, or surrounds organs and structures of the body, and which is not bone. Examples of soft tissues include, but are not limited to, tendon tissue, ligament tissue, meniscus tissue, muscle tissue, skin tissue, bladder tissue, and dermal tissue.

[0025] As used herein, the term "collagen matrix" refers to a biocompatible scaffold comprising collagenous fibers (e.g., collagen I) that provides a structural support for the growth and propagation of cells. In some embodiments, a collagen matrix is a biological tissue that has been harvested from a subject (e.g., a human or non-human animal). Examples of collagen sources include, but are not limited to, skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder. In some embodiments, the collagen matrix is from anatomical soft tissue sources (e.g., skin, dermis, tendon, or ligament) and not from bone or articular cartilage. In some embodiments, the collagen matrix primarily comprises type I collagen rather than type II collagen.

[0026] As used herein, the term "mesenchymal stem cell" refers to a multipotent stem cell (i.e., a cell that has the capacity to differentiate into a subset of cell types) that can differentiate into a variety of cell types, including osteoblasts, chondrocytes, and adipocytes. Mesenchymal stem cells can be obtained from a variety of tissues, including but not limited to bone marrow tissue, adipose tissue, muscle tissue, birth tissue (e.g., amnion, amniotic fluid, or umbilical cord tissue), skin tissue, bone tissue, and dental tissue.

[0027] The term "reduce immunogenicity" or "reduced immunogenicity" refers to a decreased potential to stimulate an immunogenic rejection in a subject. In some

embodiments, a collagen matrix as described herein is treated to reduce its immunogenicity (i.e., decrease its potential to stimulate an immunogenic rejection in a subject in which the treated collagen matrix is implanted or topically applied) relative to a corresponding collagen matrix of the same type that has not been treated. The term "non-immunogenic," as used with reference to a collagen matrix, refers to a collagen matrix which does produce a detectable immunogenic response in a subject.

[0028] The terms "decellularized" and "acellular," as used with reference to a collagen matrix, refer to a collagen matrix from which substantially all endogenous cells have been removed from the matrix. In some embodiments, a decellularized or acellular collagen matrix is a matrix from which at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more of endogenous cells have been removed (e.g., by a decellularization treatment), relative to a corresponding collagen matrix of the same type which has not been subjected to removal of endogenous cells (e.g., has not been subjected to a decellularization treatment). Decellularization can be quantified according to any method known in the art, including but not limited to measuring reduction in the percentage of DNA content in a treated collagen matrix relative to an untreated collagen matrix or by histological staining. In some embodiments, a decellularized or acellular collagen matrix has a DNA content that is reduced by at least 50%, 60%, 70%, 80%, 90% or more as compared to an untreated collagen matrix.

[0029] The term "subject" refers to humans or other non-human animals including, e.g., other primates, rodents, canines, felines, equines, ovines, bovines, porcines, and the like.

[0030] The terms "treat," "treating," and "treatment" refer to delaying the onset of, retarding or reversing the progress of, or alleviating or preventing either the disease or condition to which the term applies, or one or more symptoms of such disease or condition.

BRIEF DESCRIPTION OF THE DRAWINGS

[0031] Figure 1. Visual assessment of original (A), rinse (B), and final (C) wells as viewed under inverted microscope.

[0032] Figure 2. Group C top original (A) and bottom original (B) wells showed some live cells adhered to the plate.

[0033] Figure 3. Cell only control wells showed elongated, healthy looking cells near confluence.

[0034] Figure 4. Recoverable cell populations from seeded samples. (A) Group C Top seeded cells, released. (B) Unseeded control, no cells released from skin.

[0035] Figure 5. Comparison of average number of total and live cells, and number of cells positive for various CD markers, between the lipoaspirate, meat grinder + rinse, and meat grinder no rinse methods of isolating a stromal vascular fraction from adipose tissue.

DETAILED DESCRIPTION OF THE INVENTION

I. Introduction

[0036] Collagen matrix-containing tissue products, such as small intestinal submucosa, can be applied to a soft tissue injury site to promote repair or reconstruction at the site of injury. It has previously been shown that seeding a collagen matrix-containing tissue product with stem cells promotes more rapid repair or reconstruction than occurs with a non-stem cell seeded collagen matrix tissue product. These results suggest that seeding stem cells on a collagen matrix may promote the rate and/or quality of soft tissue repair or regeneration.

[0037] However, previously described stem cell-seeded collagen matrices have utilized stem cells that are grown or proliferated ex vivo (e.g., on a plastic dish) prior to seeding the stem cells on the collagen matrix. Because cell populations change upon attachment to and proliferation on tissue culture plastic, culturing stem cells ex vivo prior to seeding the stem cells on a collagen matrix may result in undesirable phenotypic changes to the seeded stem cells.

[0038] Thus, in some embodiments the present invention provides compositions for treating soft tissue injuries comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix, wherein the mesenchymal stem cells are derived from a tissue that has been processed (i.e., digested) to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells that is seeded onto the collagen matrix, and wherein the mesenchymal stem cells are not cultured ex vivo (e.g., on a plastic dish) prior to seeding the cell suspension on the collagen matrix. The present invention also provides for methods of making said compositions comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix and methods of treating a subject having a soft tissue injury using said compositions comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix. [0039] The present invention also relates to methods of preparing tissues for isolation of cell suspensions comprising mesenchymal stem cells. Cadaveric human tissue is regularly recovered from consented donors to be used in tissue product processing and medical device manufacturing. In some cases, cadaveric tissue may contain certain cell populations, such as progenitor cells or stem cells, which can be incorporated into therapeutic products and methods. Methods for obtaining progenitor cells or stem cells from such tissue have been described. For example, PCT Publication WO 2010/059565 to Shi, which is incorporated herein by reference, discloses techniques for isolating adipose derived stem cells from cadaver tissue.

[0040] In some embodiments, the present invention encompasses systems and methods for the pre-processing of various soft and fibrous tissues, prior to the isolation of progenitor and stem cell populations therefrom. For example, such preparatory techniques can be carried out on the cadaver tissue prior to isolation of the progenitor or stem cells, or prior to isolation of fractions containing such cells. In some cases, preparatory techniques can be performed on adipose tissue, prior to isolation of a stromal vascular fraction (SVF), a progenitor cell population, a stem cell population, or the like. Such isolated cell populations or fractions can be used in therapeutic treatments and products.

II. Compositions for Treating Soft Tissue Injuries

[0041] In one aspect, the present invention provides compositions for treating soft tissue injuries, wherein the composition comprises a collagen matrix and mesenchymal stem cells adhered to the collagen matrix. In some embodiments, the mesenchymal stem cells are derived from a tissue that has been processed (i.e., digested) to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells that is seeded onto the collagen matrix and incubated under conditions suitable for adhering the mesenchymal stem cells to the collagen matrix.

[0042] In some embodiments, the mesenchymal stem cells are not cultured ex vivo after formation of the cell suspension and prior to seeding of the cell suspension on the collagen matrix. In some embodiments, the collagen matrix comprises more cells adhered to the outward (epidermal) side or surface of the collagen matrix than to the inward side or surface of the collagen matrix.

Collagen matrix

[0043] A collagen matrix for use in the present invention can be from any collagenous tissue. In some embodiments, the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder. In some embodiments, the collagen matrix is not articular cartilage or bone. In some embodiments, the collagen matrix primarily comprises type I collagen rather than type II collagen.

[0044] In some embodiments, the collagen matrix is harvested from a subject, e.g., a human, bovine, ovine, porcine, or equine subject. In some embodiments, the collagen matrix is an engineered collagen matrix, e.g., a matrix that is engineered from one or more purified types of collagen, and optionally further comprising other components commonly found in collagen matrices, e.g., glycosaminoglycans. Engineered collagen matrix is known in the art and is readily commercially available.

[0045] In some embodiments, the collagen matrix that is seeded with a cell suspension is a flowable soft tissue matrix. For example, a collagen matrix can be prepared by obtaining a portion of soft tissue material, and cryofracturing the portion of soft tissue material, so as to provide a flowable soft tissue matrix composition upon thawing of the cryo fractured tissue. Exemplary compositions and methods involving such flowable matrix materials are described in U.S. Patent Application No. 13/712,295, the contents of which are incorporated herein by reference.

[0046] In some embodiments, the collagen matrix is allogeneic to the subject in which the collagen matrix is implanted or applied. As non-limiting examples, in some embodiments, the collagen matrix is human and the subject is human, or the collagen matrix is equine and the subject is equine. In some embodiments, the collagen matrix is xenogeneic to the subject in which the collagen matrix is implanted or applied. As a non-limiting example, in some embodiments, the collagen matrix is porcine or bovine and the subject is human. In some embodiments, the collagen matrix is from a cadaveric donor.

[0047] In some embodiments, the collagen matrix has low immunogenicity or is non- immunogenic. In some embodiments, the collagen matrix is treated to reduce the

immunogenicity of the matrix relative to a corresponding collagen matrix of the same type which has not been treated. Typically, to reduce immunogenicity the collagen matrix is treated to remove cellular membranes, nucleic acids, lipids, and cytoplasmic components, leaving intact a matrix comprising collagen and other components typically associated with the matrix, such as elastins, glycosaminoglycans, and proteoglycans. In some embodiments, a immunogenicity of a treated collagen matrix is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or more as compared to an untreated corresponding collagen matrix of the same type (e.g., treated dermis vs. untreated dermis). Any of a number of treatments can be used to reduce the immunogenicity of a collagen matrix, including but not limited to decellularization of the collagen matrix (e.g., by treatment with a surfactant and a protease or nuclease) or cellular disruption of the collagen matrix (e.g., by cryopreservation, freeze/thaw cycling, or radiation treatment). Methods of decellularizing or disrupting the cells of a collagen matrix are described, for example, in U.S. Patent No. 7,914,779; U.S. Patent No. 7,595,377; U.S. Patent No. 7,338,757; and U.S. Publication No. 2005/0186286, the contents of each of which is herein incorporated by reference in its entirety.

[0048] The reduction in immunogenicity can be quantified by measuring the reduction in the number of endogenous cells in the treated collagen matrix or by measuring the reduction in DNA content in the treated collagen matrix as compared to a corresponding untreated collagen matrix of the same type, according to methods known in the art. In one non-limiting method, reduction in immunogenicity is quantified by measuring the DNA content of the collagen matrix post-treatment. Briefly, a treated collagen matrix is stained with a fluorescent nucleic acid stain (e.g., PicoGreen® (Invitrogen) or Hoechst 33258 dye), then the amount of fluorescence is measured by fluorometer and compared to the amount of fluorescence observed in a corresponding untreated collagen matrix of the same type which has also been subjected to fluorescent nucleic acid stain. In another non-limiting method, reduction in immunogenicity is quantified by histological staining of the collagen matrix post-treatment using hematoxylin and eosin and optionally DAPI, and comparing the number of cells observed in the treated collagen matrix to the number of cells observed in a corresponding untreated collagen matrix of the same type which has also been subjected to histological staining.

[0049] In some embodiments, a treated collagen matrix has at least 50%, at least 60%, at least 70%, at least 80%, or at least 90% fewer endogenous cells than a corresponding untreated collagen matrix of the same type. In some embodiments, a treated collagen matrix has a DNA content that is decreased by at least 50%, at least 60%, at least 70%, at least 80%, or at least 90% as compared to a corresponding untreated collagen matrix of the same type.

[0050] In some embodiments, the collagen matrix retains bioactive cytokines and/or bioactive growth factors that are endogenous to the collagen matrix. These bioactive cytokines and/or growth factors may enhance or accelerate soft tissue repair or regeneration, for example by recruiting cells to the site of the soft tissue injury, promoting extracellular matrix production, or regulating repair processes. In some embodiments, the collagen matrix retains one or more bioactive cytokines selected from interleukins (e.g., IL-1, IL-4, IL-6, IL- 8, IL-15, IL-16, IL-18, and IL-28), tumor necrosis factor alpha (TNFa), and monocyte chemoattractant protein- 1 (MCP-1). In some embodiments, the collagen matrix is skin and the one or more bioactive cytokines are selected from IL-4, IL-6, IL-15, IL-16, IL-18, and IL- 28. In some embodiments, the collagen matrix is skin and the one or more bioactive cytokines are selected from IL-15 and IL-16. In some embodiments, the collagen matrix retains one or more bioactive growth factors selected from platelet-derived growth factor alpha (PDGFa), matrix metalloproteinase (MMP), transforming growth factor beta (TGF ), vascular endothelial growth factor (VEGF), and epidermal growth factor (EGF). In some embodiments, the collagen matrix is skin and the one or more bioactive growth factors is PDGFa. [0051] The retention of cytokines and/or growth factors by the collagen matrix, as well as marker profiles of which cytokines and/or growth factors are retained by the collagen matrix, can be determined according to methods known in the art, for example by immunoassay. A variety of immunoassay techniques can be used to detect the presence or level of cytokines and/or growth factors. The term immunoassay encompasses techniques including, without limitation, enzyme immunoassays (EIA) such as enzyme multiplied immunoassay technique (EMIT), enzyme-linked immunosorbent assay (ELISA), antigen capture ELISA, sandwich ELISA, IgM antibody capture ELISA (MAC ELISA), and microparticle enzyme

immunoassay (MEIA); capillary electrophoresis immunoassays (CEIA); radioimmunoassays ( IA); immunoradiometric assays (IRMA); fluorescence polarization immunoassays (FPIA); and chemiluminescence assays (CL). If desired, such immunoassays can be automated. Immunoassays can also be used in conjunction with laser induced fluorescence (see, e.g., Schmalzing and ashabeh, Electrophoresis, 18:2184-2193 (1997); Bao, J. Chromatogr. B. Biomed. Set, 699:463-480 (1997)). Liposome immunoassays, such as flow-injection liposome immunoassays and liposome immunosensors, are also suitable for use in the present invention (see, e.g., Rongen et ah, J. Immunol. Methods, 204: 105-133 (1997)). In addition, nephelometry assays, in which the formation of protein/antibody complexes results in increased light scatter that is converted to a peak rate signal as a function of the marker concentration, are suitable for use in the present invention. Nephelometry assays are commercially available from Beckman Coulter (Brea, CA; Kit #449430) and can be performed using a Behring Nephelometer Analyzer (Fink et a , J. Clin. Chem. Clin. Biol. Chem., 27:261-276 (1989)).

[0052] Antigen capture ELISA can be useful for determining the presence or level of cytokines and/or growth factors. For example, in an antigen capture ELISA, an antibody directed to an analyte of interest is bound to a solid phase and sample is added such that the analyte is bound by the antibody. After unbound proteins are removed by washing, the amount of bound analyte can be quantitated using, e.g., a radioimmunoassay (see, e.g., Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory, New York, 1988)). Sandwich ELISA can also be used. For example, in a two-antibody sandwich assay, a first antibody is bound to a solid support, and the analyte of interest is allowed to bind to the first antibody. The amount of the analyte is quantitated by measuring the amount of a second antibody that binds the analyte. The antibodies can be immobilized onto a variety of solid supports, such as magnetic or chromatographic matrix particles, the surface of an assay plate (e.g., microtiter wells), pieces of a solid substrate material or membrane (e.g., plastic, nylon, paper), and the like. An assay strip can be prepared by coating the antibody or a plurality of antibodies in an array on a solid support. This strip can then be dipped into the test sample and processed quickly through washes and detection steps to generate a measurable signal, such as a colored spot. Mesenchymal stem cells

[0053] The mesenchymal stem cells ("MSCs") which attach to the collagen matrix can be derived from any of a number of different tissues, including but not limited to adipose tissue, muscle tissue, birth tissue (e.g., amnion or amniotic fluid), skin tissue, bone tissue, or bone marrow tissue. The tissue may be harvested from a human subject or a non-human subject (e.g., a bovine, porcine, or equine subject). In some embodiments, the tissue is harvested from a human cadaveric donor. In some embodiments, the tissue is harvested from the subject who is to be treated for a soft tissue injury. In some embodiments, the tissue is allogeneic to the collagen matrix. As non-limiting examples, in some embodiments, the tissue is human and the collagen matrix is human, or the tissue is equine and the collagen maxtrix is equine. In some embodiments, the tissue is xenogeneic to the collagen matrix. As a non-limiting example, in some embodiments, the tissue is human and the collagen matrix is porcine or bovine. In some embodiments, the tissue and the collagen matrix are from the same donor (e.g., the same human donor, e.g., the same cadaveric donor). In some embodiments, the tissue and the collagen matrix are allogeneic but are harvested from different donors (e.g., different human donors, e.g., different cadaveric donors).

[0054] In some embodiments, mesenchymal stem cells that are seeded to or that attach to the collagen matrix are identified and characterized based on the presence or absence of one or more markers. In some embodiments, mesenchymal stem cells are identified as having a particular marker profile.

[0055] In some embodiments, the mesenchymal stem cells are characterized based on the presence or absence of one, two, three, four, or more markers of cell differentiation ("CD"). In some embodiments, the CD markers are selected from CD34, CD45, CD73, CD90, CD105, CD1 16, CD144, and CD166. Mesenchymal stem cell markers are described, for example, in Lin et ah, Histol. Histopathol. 28: 1 109-1 1 16 (2013), and in Halfon et al., Stem Cells Dev. 20:53-66 (201 1).

[0056] As used herein, a "positive" mesenchymal stem cell marker is a marker on the surface of the cell (e.g., a surface antigen, protein, or receptor) that is unique to mesenchymal stem cells. In some embodiments, a positive mesenchymal stem cell marker is CD 105, CD 144, CD44, CD 166, or CD90. In some embodiments, at least 5%, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, or more of the MSC cells seeded to the collagen matrix are positive for one or more of the CD markers CD 105, CD 144, CD44, CD 166, or CD90.

[0057] As used herein, a "negative" mesenchymal stem cell marker is a marker on the surface of the cell (e.g., a surface antigen, protein, or receptor) that is distinctly not expressed by mesenchymal stem cells. In some embodiments, a negative mesenchymal stem cell marker is CD34 or CD116. In some embodiments, at least 25%, at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, or more of the MSC cells seeded to the collagen matrix are negative for one or more of the CD markers CD34 and CD1 16. In some embodiments, the mesenchymal stem cells are identified as expressing one or more of the positive MSC markers CD 105, CD144, CD44, CD 166, or CD90 and are further identified as not expressing one or more of the negative MSC markers CD34 and CD116.

[0058] The presence and/or amount of a marker of interest on a mesenchymal stem cell can be determined according to any method of nucleic acid or protein expression known in the art. Nucleic acid may be detected using routine techniques such as northern analysis, reverse- transcriptase polymerase chain reaction (RT-PCR), microarrays, sequence analysis, or any other methods based on hybridization to a nucleic acid sequence that is complementary to a portion of the marker coding sequence (e.g., slot blot hybridization). Protein may be detected using routine antibody-based techniques, for example, immunoassays such as ELISA, Western blotting, flow cytometry, immunofluorescence, and immunohistochemistry. In some embodiments, the presence and/or amount of a marker of interest is determined by immunoassay (e.g., ELISA) as described above.

III. Methods of Making Compositions for Treating Soft Tissue Injuries

[0059] In another aspect, the present invention provides methods of making a composition for treating a soft tissue injury. In some embodiments, the method comprises:

(a) digesting a tissue to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells;

(b) seeding the cell suspension onto a collagen matrix;

(c) incubating the collagen matrix seeded with the cell suspension under conditions suitable for adhering the mesenchymal stem cells to the collagen matrix; and

(d) removing the non-adherent cells from the collagen matrix.

[0060] In some embodiments, prior to step (b), the method further comprises treating the collagen matrix to reduce the immunogenicity of the collagen matrix. Preparation of a cell suspension

[0061] A cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells for seeding onto the collagen matrix can be derived from a variety of types of tissues. In some embodiments, the tissue that is digested to form the cell suspension is selected from adipose tissue, muscle tissue, birth tissue (e.g., amnion or amniotic fluid), skin tissue, bone tissue, or bone marrow tissue. In some embodiments, the tissue is harvested from a human subject or a non-human subject (e.g., a bovine, porcine, or equine subject). In some embodiments, the tissue is harvested from a human cadaveric donor. In some embodiments, the tissue is harvested from the subject who is to be treated for a soft tissue injury. [0062] Methods of forming a cell suspension from tissue and seeding the cell suspension onto a scaffold have been previously described for adipose tissue. See US 2010/0124776 and US Application No. 12/965,335, the contents of each of which are herein incorporated by reference in its entirety. A tissue is enyzmatically digested to form a cell suspension comprising mesenchymal stem cells and unwanted cells. In some embodiments, the tissue is digested with a collagenase solution (e.g., collagenase I). Optionally, the tissue is digested with the collagenase solution under continuous agitation (e.g., at about 75 rpm) for a suitable period of time (e.g., 30 minutes, 45 minutes, 60 minutes, or longer) until the tissue appears smooth by visual inspection.

[0063] Optionally, the tissue may be washed prior to or during digestion. In some embodiments, the tissue is washed with a volume of a solution (e.g., phosphate-buffered saline (PBS) or growth media) that is at least substantially equal to the tissue. In some embodiments, the tissue is washed with a solution comprising antibiotics (e.g., 1% penicillin and streptomycin) and/or antimycotics. In some embodiments, the tissue is washed at about 37°C, optionally with shaking to agitate the tissue. Washing may include repeated steps of washing the tissue, then aspirating off a supernatant tissue, then washing with fresh solution, until a clear infranatant solution is obtained.

[0064] Digestion of the tissue followed by centrifugation of the digested tissue results in the formation of a cell suspension, which can be aspirated to remove the supernatant and leave a cell pellet comprising mesenchymal stem cells and unwanted cells. The cell pellet is resuspended in a solution (e.g., growth media with antibiotics) and the resulting cell suspension is then seeded on a collagen matrix without any intervening steps of further culturing or proliferating the mesenchymal stem cell-containing cell suspension prior to the seeding step. [0065] In some embodiments, the cell suspension can be enriched for stem cells by serial plating on a collagen-coated substrate prior to seeding the cell suspension on the collagen matrix. As one non-limiting example, muscle tissue can be prepared according to the following method to form an enriched cell suspension for seeding on a collagen matrix. The harvested muscle sample is minced, digested at 37°C with 0.2% collagenase, trypsinized, filtered through 70 μιη filters, and cultured in collagen-coated cell culture dishes (35 -mm diameter, Corning, Corning, NY) at 37°C in F12 medium (Gibco, Paisley, UK), with 15% fetal bovine serum. After a suitable period of time (e.g., one hour), the supernatant is withdrawn from the cell culture dishes and replated in fresh collagen-coated cell culture dishes. The cells that adhere rapidly within this time period will be mostly unwanted cells (e.g., fibroblasts). When 30%-40% of the cells have adhered to each collagen-coated cell culture dish, serial replating of the supernatant is repeated. After 3-4 serial replatings, the culture medium is enriched with small, round cells, thus forming a stem cell-enriched cell suspension. Seeding the collagen matrix

[0066] For seeding the cell suspension onto the collagen matrix, the collagen matrix may be placed in a culture dish, e.g., a 24-well culture plate and then the cell suspension added onto the collagen matrix. The collagen matrix onto which the cell suspension is seeded can be any collagen matrix as described herein. In some embodiments, the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder. In some embodiments, the collagen matrix is not articular cartilage. In some embodiments, wherein the collagen matrix comprises multiple layers, one or more of the matrix layers can be seeded with the cell suspension. As a non-limiting example, in some embodiments a dermal matrix comprises two layers, an epidermal facing basement membrane and a deeper hypodermal surface. The cell suspension can be seeded on the epidermal facing basement membrane, the deeper hypodermal surface, or both the epidermal facing basement membrane and the deeper hypodermal surface.

[0067] In some embodiments, the collagen matrix is treated to reduce immunogenicity prior to seeding the cell suspension on the collagen matrix. In some embodiments, the immunogenicity of the collagen matrix after treatment is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or more as compared to an untreated corresponding collagen matrix of the same type. In some embodiments, the treated collagen matrix is non-immunogenic. As described above, any of a number of treatments can be used to reduce the immunogenicity of a collagen matrix, including but not limited to decellularization of the collagen matrix (e.g., by treatment with a surfactant and a protease or nuclease) or cellular disruption of the collagen matrix (e.g., by cryopreservation, freeze/thaw cycling, or radiation treatment). In some embodiments, the collagen matrix is treated with a decellularizing agent (e.g., a solution comprising a surfactant and a protease or a surfactant and a nuclease). Other suitable methods of decellularization are described in Crapo et at, Biomaterials 32:3233-43 (201 1), the contents of which are incorporated by reference herein.

[0068] Following seeding of the cell suspension onto the collagen matrix, the cell suspension-seeded collagen matrix is incubated under conditions suitable for adhering mesenchymal stem cells to the matrix. In some embodiments, the cell suspension-seeded collagen matrix is incubated for several days (e.g., up to about 24 hours, about 36 hours, about 48 hours, about 60 hours, or about 72 hours) to allow adherence. In some

embodiments, the cell suspension-seeded collagen matrix is incubated in a CO₂ incubator at about 37°C. The cell suspension-seeded collagen matrix may be incubated with culture medium (e.g., DMEM/F12), optionally with supplements and/or antibiotics and/or antimycotics (e.g., DMEM/F12 with 10% fetal bovine serum (FBS) and 1% penicillin, streptomycin, and amphotericin B (PSA)). In some embodiments, a greater number of mesenchymal stem cells adhere to the outward (epidermal) side or surface of the collagen matrix than to the inward (hypodermal) side or surface of the collagen matrix.

[0069] After the incubation step, the cell suspension-seeded collagen matrix is washed (e.g., with PBS or culture medium) to remove non-adherent cells from the collagen matrix. In some embodiments, the collagen matrix with adherent mesenchymal stem cells is placed in cryopreservation media (e.g., 10% DMSO, 90% serum) and kept frozen at -80°C.

Preparation of tissues for isolation of cell suspension

[0070] In some embodiments, the present invention provides techniques for manipulating large quantities or volumes of adipose, muscle, and other soft and fibrous tissues containing progenitor and stem cell populations, in a repeatable and consistent manner, by mechanical grinding to a defined particle size, in order to effectively prepare the tissues for isolation of a cell suspension (e.g., the stromal vascular fraction (SVF) of adipose tissue), prior to enzymatic or other digestion techniques. [0071] Exemplary methods may include preparing large pieces and large quantities of adipose, muscle, or other tissues containing progenitor or stem cell populations, or both, for isolation of a cell suspension using a repeatable and consistent method of grinding, which can be applied to large-scale use. In this way, large pieces and large amounts of tissue can be efficiently broken down into a form suitable for subsequent isolation of the cell suspension using enzymatic or other digestion techniques. The use of mechanical grinding can enhance consistency and reproducibility through engineering controls.

[0072] In some instances, embodiments are directed toward the preparation of cadaveric tissues for optimal isolation of the cell suspension, in terms of large scale efficiency.

Adipose or other tissue types are recovered from donor cadavers and transported to a processing facility. The tissue is repeatedly washed in Dulbecco's Phosphate-Buffered Saline (DPBS) or another isotonic reagent, optionally with antibiotic and/or antimycotic solution, to remove blood and other debris. The tissue is then ground from its original large size into small, consistent particles. The reduced particle size and increased surface area allow for more efficient digestion, by enzymes or other techniques, and improved yield of the progenitor and stem cell-containing cell suspension. The small particles can then be washed again in isotonic solution, such as DPBS.

[0073] In some embodiments, it may be useful to rinse the tissue, either before grinding, after grinding, or both. Specific rinsing protocols can be selected to achieve a desired result, and may be performed in any combination. For example, a final cell population may be affected by the number of rinses and the sequence in which the tissue is ground and rinsed. Therefore, embodiments of the present invention encompass techniques which involve rinsing before grinding, rinsing after grinding, and rinsing before and after grinding, and the selected technique may depend on the desired cell population.

[0074] The grinding protocols disclosed herein may provide enhanced results when compared to certain currently known techniques. For example, some known techniques involve enzymatically digesting large pieces of tissue, such as adipose tissue, in their originally harvested form. Relatedly, some known techniques are limited to the isolation of a cell suspension in only very small amounts (e.g. -50 cc), for example using recovered lipoaspirate, whole pieces, or hand-minced particles.

[0075] In contrast, embodiments of the present invention facilitate large-scale

manufacturing techniques using large amounts of tissue which can be processed in a timely and consistent manner. Toward this end, a mechanical grinder can be used to reduce harvested tissue into smaller particles to promote efficiency of isolation of a cell suspension for large scale manufacturing. In some aspects, such reduction of the particle size provides an increased surface area and allows quicker, more efficient digestion and isolation of the cell suspension. According to some embodiments, a mechanical grinder can be used to process the harvested tissue into particles having uniform sizes and shapes. In some embodiments, the process is automated so that tissue pieces having uniform size or shape properties can be obtained regardless of any subjectivity on the part of the operator.

[0076] In some embodiments, a standard grinder is used to reduce particle size consistently for large scale, regulated operations. Components of an exemplary grinding apparatus can be made of durable, autoclavable, and inert materials, such as stainless steel, which may facilitate ease of use and withstand large scale manufacturing workloads. In some cases, a grinding system can be manually operated. In some case, a grinding system can be electrically operated. The tissue types processed by the grinding system may include any soft tissues containing progenitor and stem cell populations such as adipose, muscle, skin, birth tissues, and the like. Various grinder speeds and attachments can be used to break down the tissue to a preferred particle size for each specific tissue type or application.

[0077] The tissue pre-processing systems and methods disclosed herein are well suited for use with the large scale production of tissue and medical devices involving large amounts of stem and progenitor cells. In accordance with these techniques, the donor cell yield can be maximized. In some cases, the grinding approaches can be utilized on the front end of the process, whereby soft/fibrous tissues are recovered from donor cadavers in bulk and ground at a processing facility to yield large amounts of cell suspensions comprising stem or progenitor cell populations. In some cases, tissue harvesting techniques may provide recovered tissue in large pieces and in large amounts. Relatedly, adipose processing techniques disclosed herein may be used as a primary method of large scale adipose recovery, which may optionally be supplanted by liposuction.

IV. Methods of Treatment

[0078] In yet another aspect, the present invention provides methods of treating a soft tissue injury in a subject using a composition as described herein (e.g., a composition comprising a collagen matrix and mesenchymal stem cells adhered to the collagen matrix). In some embodiments, the method comprises contacting a soft tissue injury site with a composition as described herein.

[0079] The compositions of the present invention can be used to treat subjects having any soft tissue injury that requires repair or regeneration. Such soft tissue injuries may result, for example, from disease, trauma, or failure of the tissue to develop normally. Examples of soft tissue injuries that can be treated according to the methods of the present invention include, but are not limited to, tears or ruptures of a soft tissue (e.g., tendon, ligament, meniscus, muscle, bladder or skin); hernias; skin wounds; burns; skin ulcers; surgical wounds; vascular disease (e.g., peripheral arterial disease, abdominal aortic aneurysm, carotid disease, and venous disease; vascular injury; improper vascular development); and muscle diseases (e.g., congenital myopathies; myasthenia gravis; inflammatory, neurogenic, and myogenic muscle diseases; and muscular dystrophies such as Duchenne muscular dystrophy, Becker muscular dystrophy, myotonic dystrophy, limb-girdle-muscular dystrophy, facioscapulohumeral muscular dystrophy, congenital muscular dystrophies, oculopharyngeal muscular dystrophy, distal muscular dystrophy, and Emery-Dreifuss muscular dystrophy). In some embodiments, the soft tissue injury is an injury to a tendon tissue, a ligament tissue, a meniscus tissue, a muscle tissue, a skin tissue, a bladder tissue, or a dermal tissue. In some embodiments, the soft tissue injury is a surgical wound, a trauma wound, a chronic wound, an acute wound, a deep channel wound, an exsanguinating site, or a burn.

[0080] In some embodiments, the composition is allogeneic to the subject that is being treated. As non-limiting examples, in some embodiments, the collagen matrix is human, the mesenchymal stem cells adhered to the matrix are human, and the subject is human; or the collagen matrix is equine, the mesenchymal stem cells adhered to the matrix are equine, and the subject is equine. In some embodiments, the composition is xenogeneic to the subject that is being treated. As a non-limiting example, in some embodiments, the collagen matrix is porcine or bovine, the mesenchymal stem cells adhered to the matrix are human, and the subject is human.

[0081] In some embodiments, the compositions described herein are used to treat humans having a soft tissue injury as described above. In some embodiments, the compositions described herein are used for veterinary applications. For example, in some embodiments, a composition of the present invention is used a non-human animal such as a non-human primate, mouse, rat, dog, cat, pig, sheep, cow, or horse having a soft tissue injury as described above. In some embodiments, a composition as described herein is used to treat a horse having a ruptured or torn soft tissue (e.g., ligament).

[0082] A mesenchymal stem cell-seeded collagen matrix of the present invention can be applied or introduced into a subject's body according to any method known in the art, including but not limited to implantation, injection, topical application, surgical attachment, or transplantation with other tissue. In some embodiments, the composition is administered topically. In some embodiments, the composition is administered by surgical implantation. The matrix may be configured to the shape and/or size of a tissue or organ or can be resized prior to administration (e.g., by a surgeon) to the size of the soft tissue injury being repaired. In some embodiments, a mesenchymal stem cell-seeded collagen matrix of the present invention is multilayered.

V. Examples

[0083] The following examples are offered to illustrate, but not to limit the claimed invention.

Example 1: Adherence and survival of adipose-derived stem cells on acellular dermal matrix

Background

[0084] Acellular dermal matrix samples were decellularized and washed in DPBS/10%PSA for 72 hours. Samples were placed in DPBS/4%PSA for 24 hours, and then placed in DPBS/1%PSA for 18 hours. Some samples to be used were placed in DMEM- F12/10%FBS/1%PSA while the rest of the tissue was stored in DPBS/4%PSA at 4°C.

Sample Preparation

[0085] First, the acellular dermal matrix samples were removed from antibiotic storage. Next, circular samples were cut to fit snugly into 24-well plate (diameter = 15.6 mm) to avoid floating, while covering the entire well bottom. There were three rinsing groups: (a) DPBS stored samples, rinsed in DPBS/1% PSA; (b) DPBS stored samples, rinsed in DMEM- F12/20%FBS/1%PSA; and (c) Media stored samples, rinsed in DMEM- F12/20%FBS/1%PSA. For each rinsing group, samples were placed into 125 ml vented Erlenmeyer flask with 50 ml of either DPBS/1%PSA or DMEM-F12/20%FBS/1%PSA and shaken at 37°C in horizontal shaker for 60 minutes at 100-125 RPM. Three rinses were performed, with the reagent changed at each rinse. The samples were then removed from the flask and placed in DMEM-F12/10%FBS/1%PSA (all Groups) in 24-well plate until seeding (>10 min). The plate layouts are shown below in Table 1 and Table 2. Table 1. Plate 1 layout

Original Well Rinse Well Final Well Controls

Bottom** 1.8 ml total volume 1.8 ml total volume Media only (post-inc)

200,000 cells 1.8 total volume

1.8 ml total volume

Group C Top* 1.8 ml total volume 1.8 ml total volume Top

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

Bottom** 1.8 ml total volume 1.8 ml total volume Bottom

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

* "Top" refers to the outward epidermal facing surface or basement membrane ** "Bottom" refers to the deeper dermal or hypodermal facing surface

Table 2. Plate 2 layout

Original Well Rinse Well Final Well Controls

Group A Top* 1.8 ml total volume 1.8 ml total volume Top

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

Bottom** 1.8 ml total volume 1.8 ml total volume

200,000 cells

1.8 ml total volume

Group B Top* 1.8 ml total volume 1.8 ml total volume Top

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

Bottom** 1.8 ml total volume 1.8 ml total volume

200,000 cells

1.8 ml total volume

Group C Top* 1.8 ml total volume 1.8 ml total volume Top

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

Bottom** 1.8 ml total volume 1.8 ml total volume Bottom

200,000 cells No cells

1.8 ml total volume 1.8 ml total volume

* "Top" refers to the outward epidermal facing surface or basement membrane ** "Bottom" refers to the deeper dermal or hypodermal facing surface

Seeding

[0086] Cultured adipose-derived stem cells (ASCs) were isolated by DPBS wash and

Tryple Express detachment (cells used: 1 13712 (PI)). The cells were centrifuged and counted on Countess and diluted to l.OxlO⁶ cells/ml. The media was aspirated from all sample wells, and 200,000 cells (200 μΐ) were added to each sample and positive control well. The volume of all wells was gently brought up to 1.8 ml with culture media (DMEM- F12/10%FBS/1%PSA). The samples were placed in a 37°C C0₂ incubator for 42-48 hours.

Evaluation

[0087] For evaluating the samples, first the media was warmed to 37 °C and PrestoBlue to room temperature. The sample plates were removed from the incubator, then 1.8 1 media was added to each "Rinse" and "Final" well. With forceps, each graft was removed from the "Original" well and submerged 8-10 times in the "Rinse" well, then placed in the "Final" well, with appropriate orientation. For Plate 1 only, 200 μΐ of PrestoBlue reagent was added to each sample and control well. The samples were then incubated in the CO₂ incubator for 3 hours. Following incubation, seeded samples were removed to DPBS (-Ca/-Mg) in a new 12- well plate and placed in a shaker with low RPM. Triplicate aliquots were removed to black 96-well plate(s) for fluorescence reading, and the highest adherence samples (brightest readings) and no cell control were used for Tryple Express detachment and cell count. Plate 2 samples were then prepared for H&E histology using the highest adherence samples as seen from Plate 1.

Visual Assessment

[0088] Each Original, Rinse, and Final well were viewed under inverted microscope

(sample removed from Final), as shown in Figure 1. Group A and Group B wells were very similar for Top and Bottom samples. No live cells were visualized in any of the wells. For Group A, both top and bottom sample wells had the same general appearance, with the exception of the Top Rinse well, which had a noticeable amount of oily residue. The Group A Original and Rinse wells had small to medium amounts of dead cells and debris. The Final wells had slightly less dead cells and debris. The Group B wells were alike to Group A, with the exception of the Bottom original well, which had a noticeably larger amount of dead cells than the other wells in A or B.

[0089] The Group C Rinse and Final wells were all similar to those in Groups A and B, showing medium amounts of dead cells and debris. However, the Group C Original wells were the only wells in any sample group to show live cells (Figure 2). The Top Original well had small amounts of floating dead cells in the middle with adhered living cells all around the rim. These cells likely poured over the edge of the graft and were able to adhere to the plastic during incubation. The Group C Bottom Original well also had live cells around the edges. The Bottom Original well had more visible cells than the top Original well, and this was expected because the sample had floated partially free from the plate, allowing cells to flow around. Both Group C Original wells also had medium amounts of dead cells throughout. The cell only control wells showed elongated, healthy looking cells near confluence (Figure 3). PrestoBlue Metabolic Assay

[0090] The percentage of metabolic activity was compared using the fluorescence (Table 3) and absorbance (Table 4) measurements from the PrestoBlue assay, and setting the cell-only positive control as the maximum possible level of activity. Media only backgrounds were subtracted from each sample well and positive control. Each sample was compared to the positive control, and the percent of metabolic activity for each well position was recorded. (The Group C Bottom sample partially floated free from the well plate, allowing cells to flow around and adhere to the plastic.)

Table 3. PrestoBlue Metabolic Assay based on fluorescence

The Group C Bottom sample partially floated free from the well plate, allowing cells to flow around and adhere to the plastic. Table 4. PrestoBlue Metabolic Assay based on absorbance

The Group C Bottom sample partially floated free from the well plate, allowing cells to flow around and adhere to the plastic.

[0091] Multiple trends were apparent in the metabolic activities. The Top surface of the skin showed higher metabolic activity using PrestoBlue. The cells may more readily adhere to the Top than the Bottom or they may be more metabolically active after 48 hrs on the Top surface than on the Bottom. [0092] Another trend was that the samples that were stored and rinsed in DMEM-F12/FBS had the highest metabolic activities and presumably the highest seeding efficiency. Although all Groups had a short soak in media immediately prior to seeding, the exposure to the serum- containing media was very different for the life of the samples. Those in Group C were stored in the media and rinsed in media prior to seeding. Samples from Groups A and B were stored in DPBS. Group A was rinsed in DPBS while Group B was rinsed in media.

Trvple Express Digestion

[0093] Following the PrestoBlue assay, samples from each group were washed in DPBS and cells were detached using Tryple Express. The cell populations were then centrifuged and re-plated in a 6-well plate. All seeded samples had recoverable cell populations, as viewed under the microscope. The Group C Top sample, which showed the highest level of metabolic activity, also showed the largest number of cells under the microscope, as shown in Figure 4A. The unseeded sample (Figure 4B) did not show any cells released. Example 2: Preparation of adipose tissue for forming a cell suspension

Background

[0094] Adipose for generating stem cells is typically recovered as lipoaspirate using a liposuction device. However, the liposuction process is tedious and rarely results in more than 1000 cc of adipose from a typical donor. Therefore, different recovery methods such as adipose en bloc by hand were investigated to maximize the amount of tissue recovered from a single donor. En bloc adipose could yield 2L from a single donor, thus increasing the cell yields by a factor of 2. In this study, we compared the cell counts and cell phenotype of the cells recovered using both liposuction machine and en bloc adipose from the same donor.

Phase I: Method of Manipulation

[0095] The fibrous nature of the connective tissue within the en bloc adipose made simple manual manipulation impossible. It was determined that mechanical force was necessary for reducing particle size efficiently and consistently. The initial objective was to break down the large pieces of adipose into small particles to ensure efficient collagenase digestion.

[0096] Adipose en bloc was obtained from 2 donors and manipulated using various processing tools and food preparation devices in an attempt to prepare the tissue for collagenase digestion. The processing tools used were a meat grinder, an electric bone grinder, a meat tenderizer, a cheese grater, and a blender. The post-manipulation and post- digestion appearance of the adipose were recorded. The en bloc tissue was divided into groups and subjected to each form of manipulation. Those deemed successful at reducing particle size were then digested in collagenase and the cells were isolated.

[0097] The following methods of manipulation were successful based on ease of use, repeatability, physical appearance of manipulated adipose and resulting cell counts/viability on Countess: (1) electric bone grinder (EBG) with traditional particle set or small particle set; and (2) TSM #10 meat grinder, 3/8" and 3/16" pore size. In particular, the 3/8" pore size meat grinder gave an appearance much like lipoaspirate.

Phase II: Grinder and Tissue Washing Comparison

[0098] The manipulation of adipose en bloc was further tested, using the EBG with small particle set or prototype aggressive particle set as compared to the meat grinder using the 3/8" pore plate or the 3/16" pore plate. Additionally, procedures for rinsing the tissue were tested.

[0099] Adipose en bloc from an additional three donors was obtained and processed using variations of grinders and attachments as well as rinsing techniques to optimize viable cell numbers and best mimic lipoaspirate characteristics. Donor 3 was used to compare the meat grinder plate attachments (3/8" vs 3/16") and EBG with small particle set. Minimal variation between viable cell numbers in final pellets was found. Donor 4 was used to compare the meat grinder with 3/8" plate and EBG with aggressive particle set, using samples from each that were rinsed pre-grinding only or rinsed pre- and post-grinding. Donor 5 was used for a verification test with the same protocol as for Donor 4.

[0100] The 3/8" grinding plate was preferable due to ease of use and resulting similarity of the product to lipoaspirate particle size. Additionally, the speed and consistency of the meat grinder was superior to that of the EBG, although both grinders resulted in comparable numbers of viable cells. No conclusions could be drawn regarding rinsing pre-grinding only as compared to rinsing pre- and post-grinding.

Phase III: Adipose En Bloc vs Lipoaspirate for Isolating Stromal Vascular Fraction

[0101] The purpose of this study was to isolate a cell suspension (stromal vascular fraction, or SVF) from both en bloc and liposuction adipose from the same donor and utilize flow cytometry to characterize the cell populations obtained. The samples were processed in the following ways: (1) lipoaspiration; (2) adipose en bloc with 3/8" meat grinder plate and with pre-digestion rinse (pre-grinding and post-grinding); and (3) adipose en bloc with 3/8" meat grinder plate and no pre-digestion rinse (pre-grinding only). Adipose from five additional donors was recovered using both liposuction and en bloc from the same donor. Liposuction adipose was recovered from the abdominal area, while en bloc adipose was recovered from the abdominal area as well as the thighs. 200 cc samples for each pathway were processed in parallel. The lipoaspirate was processed according to standard protocols, which includes draining transport media followed by three DPBS rinses in a separatory funnel before digestion with collagenase. [0102] The adipose en bloc followed two pathways prior to collagenase digestion, after which point standard protocols were used for processing. Prior to digestion, -500 cc of the adipose en bloc was submerged in an equal volume of DPBS and poured back and forth between two beakers a total of six pours. This rinse was repeated for three total rinses. The adipose en bloc was then ground using the meat grinder and 3/8" plate. The ground adipose en bloc was then divided into two 200 cc samples. One sample was rinsed three times with DPBS in the separatory funnel prior to digestion while the other sample went straight to digestion after grinding. The en bloc pathway utilizing the extra rinse may slightly increase processing time compared to the lipoaspirate pathway. However, processing without the post-grinding rinse will decrease the overall processing time as compared to lipoaspirate.

[0103] The resulting SVF samples were analyzed by flow cytometry for various cell surface markers (CD 73, 90, 105, 34, 45, 271 and D&-Fib) to test for cell viability and positive and negative mesenchymal stem cell markers.

Table 5. Flow cytometry analysis of SVF samples

[0104] Table 5 and Figure 5 show that there was no significant difference of live and total cell counts between lipoaspirate and meat grinder en bloc + rinse or between lipoaspirate and meat grinder en bloc no rinse. Additionally, the surface markers were not significantly different.

[0105] There were no significant differences between Lipoaspirate and either of the Meat Grinder samples for any of the categories tested. The averages showed that the largest amount of total live cells came from the meat grinder no rinse method, as did the higher averages of CD73+ and CD90+. The highest averages of CD105+ were from the lipoaspirate method. CD34+ cells were very similar between the lipoaspirate and the meat grinder no rinse methods, while CD45+ was highest in the meat grinder no rinse method and lowest in the lipoaspirate method. The meat grinder + rinse samples showed mid-range or lowest amounts for all of the categories tested. We therefore chose the meat grinder with no rinse method as the method for processing en bloc adipose.

Conclusion

[0106] This study demonstrates a method of breaking down the en bloc adipose effectively for collagenase digestion. Our data also suggested that cell counts and cell phenotype per cc of adipose tissue were not significantly different between liposuction adipose and en bloc adipose. For liposuction, the volume of fat yielded per donor is 1L, with an SVF yield/cc fat of 1 18,604 and a SVF yield/donor of 1 18 million. For en bloc processing, the volume of fat yielded per donor is 2L, with an SVF yield/cc fat of 133,394 and a SVF yield/donor of 267 million. Therefore, en bloc adipose recovery is an effective means to increase the yield by increasing the total volume of adipose we can obtain per donor.

[0107] It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference in their entirety for all purposes.

Claims

WHAT IS CLAIMED IS:

1. A composition for treating a soft tissue injury in a subject, the composition comprising:

a collagen matrix, and

mesenchymal stem cells adhered to the collagen matrix, wherein the mesenchymal stem cells are derived from a tissue processed to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells that is seeded onto the collagen matrix, and wherein the mesenchymal stem cells are not cultured ex vivo after formation of the cell suspension and prior to seeding of the cell suspension on the collagen matrix.

2. The composition of claim 1, wherein the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder.

3. The composition of claim 1 or 2, wherein the collagen matrix is treated to reduce immunogenicity.

4. The composition of claim 3, wherein the treated collagen matrix has at least 50% fewer endogenous cells than a corresponding untreated collaged matrix of the same type.

5. The composition of claim 3 or 4, wherein the treated collagen matrix has a DNA content that is decreased by at least 50% as compared to a corresponding untreated collagen matrix of the same type.

6. The composition of any of claims 3-5, wherein the treated collagen matrix is non-immunogenic.

7. The composition of any of claims 3-6, wherein the treated collagen matrix retains bioactive cytokines.

8. The composition of claim 7, wherein the bioactive cytokines are selected from the group consisting of IL-4, IL-6, IL-15, IL-16, IL-18, and IL-28.

9. The composition of any of claims 3-8, wherein the treated collagen matrix retains bioactive growth factors.

10. The composition of claim 9, wherein the bioactive growth factor is platelet-derived growth factor alpha (PDGFa).

11. The composition of any of claims 1-10, wherein the collagen matrix is decellularized dermis.

12. The composition of any of claims 1-11, wherein the collagen matrix is dermis from which the epidermis layer has been removed.

13. The composition of any of claims 1-12, wherein the collagen matrix is human, porcine, bovine, or equine.

14. The composition of any of claims 1-13, wherein the tissue that is processed to form the cell suspension is selected from adipose tissue, muscle tissue, birth tissue, skin tissue, bone tissue, or bone marrow tissue.

15. The composition of any of claims 1-14, wherein the tissue that is processed to form the cell suspension is human tissue.

16. The composition of any of claims 1-15, wherein the collagen matrix and the tissue that is processed to form the cell suspension are from the same species.

17. The composition of any of claims 1-15, wherein the collagen matrix and the tissue that is processed to form the cell suspension are from different species.

18. The composition of any of claims 1-16, wherein the collagen matrix and the tissue that is processed to form the cell suspension are from the same donor.

19. The composition of claim 18, wherein the donor is human.

20. The composition of any of claims 1-17, wherein the collagen matrix and the tissue that is processed to form the cell suspension are from different donors.

21. The composition of any of claims 1-20, wherein the mesenchymal stem cells seeded on the collagen matrix express one or more positive mesenchymal stem cell markers.

22. The composition of claim 21 , wherein the mesenchymal stem cells seeded on the collagen matrix do not express one or more negative mesenchymal stem cell markers.

23. A method of treating a soft tissue injury in a subject, the method comprising contacting the composition of any of claims 1-22 to the site of the soft tissue injury.

24. The method of claim 23, wherein the soft tissue injury is an injury to a tendon tissue, a ligament tissue, a meniscus tissue, a muscle tissue, a skin tissue, a bladder tissue, or a dermal tissue.

25. The method of claim 23, wherein the soft tissue injury is a surgical wound, a trauma wound, a chronic wound, an acute wound, a deep channel wound, an exsanguinating site, or a burn.

26. The method of any of claims 23-25, wherein the composition is administered topically.

27. The method of any of claims 23-25, wherein the composition is administered by surgical implantation.

The method of any of claims 23-27, wherein the subject is a human subject.

The method of any of claims 23-27, wherein the subject is a veterinary subject.

The method of claim 29, wherein the veterinary subject is a horse.

31. A method of making a composition for treating a soft tissue injury, the method comprising:

(a) digesting a tissue to form a cell suspension comprising mesenchymal stem cells and non-mesenchymal stem cells;

(b) seeding the cell suspension onto a collagen matrix;

(c) incubating the collagen matrix seeded with the cell suspension under conditions suitable for adhering the mesenchymal stem cells to the collagen matrix; and

(d) removing the non-adherent cells from the collagen matrix.

32. The method of claim 31, wherein the collagen matrix is skin, dermis, tendon, ligament, muscle, amnion, meniscus, small intestine submucosa, or bladder.

33. The method of claim 31 or 32, wherein prior to step (b), the method further comprises treating the collagen matrix to reduce immunogenicity.

34. The method of claim 33, wherein treating the collagen matrix to reduce immunogenicity comprises contacting the collagen matrix with a decellularizing agent.

35. The method of claim 33, wherein treating the collagen matrix to reduce immunogenicity comprises removing an epidermis layer without decellularizing the collagen matrix.

36. The method of any of claims 33-35, wherein the treated collagen matrix has at least 50% fewer endogenous cells than a corresponding untreated collaged matrix of the same type.

37. The method of any of claims 33-36, wherein the treated collagen matrix has a DNA content that is decreased by at least 50% as compared to a corresponding untreated collaged matrix of the same type.

38. The method of any of claims 33-37, wherein the treated collagen matrix is non-immunogenic.

39. The method of any of claims 33-38, wherein the treated collagen matrix retains bioactive cytokines.

40. The method of claim 39, wherein the bioactive cytokines are selected from the group consisting of IL-4, IL-6, IL-15, IL-16, IL-18, and IL-28.

41. The method of any of claims 33-40, wherein the treated collagen matrix retains bioactive growth factors.

42. The method of claim 41, wherein the bioactive growth factor is platelet-derived growth factor alpha (PDGFa).

43. The method of any of claims 31-42, wherein the collagen matrix is human, porcine, bovine, or equine.

44. The method of any of claims 31-43, wherein the tissue that is digested to form the cell suspension is selected from adipose tissue, muscle tissue, birth tissue, skin tissue, bone tissue, or bone marrow tissue.

45. The method of any of claims 31-44, wherein the tissue that is digested to form the cell suspension is human tissue.

46. The method of any of claims 31-45, wherein the collagen matrix and the tissue that is digested to form the cell suspension are from the same species.

47. The method of any of claims 31-45, wherein the collagen matrix and the tissue that is digested to form the cell suspension are from different species.

48. The method of any of claims 31-46, wherein the collagen matrix and the tissue that is digested to form the cell suspension are from the same donor.

49. The method of claim 48, wherein the donor is a human donor.

50. The method of any of claims 31-46, wherein the collagen matrix and the tissue that is digested to form the stromal vascular fraction are from different cadaveric donors.

51. The method of claim 34, wherein the method further comprises a washing step to remove the decellularizing agent.