WO2010022551A1 - A method for checking insect-resistant transgenic rice - Google Patents

A method for checking insect-resistant transgenic rice Download PDF

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WO2010022551A1
WO2010022551A1 PCT/CN2008/002012 CN2008002012W WO2010022551A1 WO 2010022551 A1 WO2010022551 A1 WO 2010022551A1 CN 2008002012 W CN2008002012 W CN 2008002012W WO 2010022551 A1 WO2010022551 A1 WO 2010022551A1
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primer
amplification
rice
amplification reaction
dna polymerase
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PCT/CN2008/002012
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French (fr)
Chinese (zh)
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王永
兰青阔
程奕
朱珠
赵新
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天津市农业科学院中心实验室
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    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8279Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
    • C12N15/8286Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/13Plant traits
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/16Primer sets for multiplex assays
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A40/00Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
    • Y02A40/10Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
    • Y02A40/146Genetically Modified [GMO] plants, e.g. transgenic plants

Definitions

  • the invention belongs to the technical field of molecular biology, and relates to a detection method of a transgenic product, in particular to a method for rapidly detecting transgenic insect-resistant rice, by visually observing the turbidity of the reaction tube or observing the color change or observing agar after adding 1000 X SYBR Green. Sugar gel electrophoresis was used to determine the amplification.
  • the insect-resistant genetic engineering introduces the Bt gene into crops such as cotton, corn, rice, tobacco, and potatoes, and kills pests; or introduces the peptone inhibitor gene into the crop to interfere with the digestive action of the pest, leading to the death of the pest.
  • the National Agricultural Environment Institute of Japan successfully introduced the rice stripe virus coat protein gene RS V CP into rice to obtain transgenic plants. Two to three weeks after inoculation, only 2% to 3% of the transgenic plants were found, while the control was 95%. 100% of the onset.
  • Chr i s tou introduced the Xa21 gene into rice, it significantly increased the resistance of rice to bacterial blight and rice blast.
  • He Yingchun et al. introduced tobacco chitinase gene into rice to obtain high resistance to rice sheath blight and rice blast disease transgenic plantation.
  • Sichuan Agricultural University introduced the disease-resistant and insect-resistant genes into the restorer line of hybrid rice, and obtained the transgenic double-resistant hybrid rice.
  • the stress-resistant genes that have been introduced into rice are mainly the CM0 gene in tobacco, the betaine biosynthetic enzyme gene codA and the rice flood-tolerant genes (pdc, pdc, pdc), which are transferred to rice to obtain drought resistance. , alkali-tolerant, salt-tolerant and stain-tolerant transgenic rice plants.
  • Yield and quality are comprehensive traits controlled by multiple genes.
  • the introduction of individual foreign genes can only increase the level of a single factor in their constituents, but has no significant effect on their comprehensive levels.
  • the current genetic engineering for improving rice yield is to introduce phosphoenolpyruvate carboxylase (PEPC) and ribulose carboxyphosphate synthase gene (RuB pC) from high-efficiency C4 plants into rice, in rice leaves. Expression in chloroplasts to increase photosynthetic efficiency of rice and increase yield.
  • Ku et al. introduced the PEPC gene into rice, and obtained transgenic rice with an increase in photosynthetic efficiency of nearly 50%, it was far from being a high-yield variety, but it brought new hope for a large increase in rice production.
  • proline-rich genes methionine-rich and lysine genes, octahydrotoxin synthase and its dehydrogenase genes, glycinin genes and high-lysine genes have been successfully.
  • the introduction of rice and the acquisition of transgenic plants are of great importance for the development of special rice products.
  • the EU first proposed the label management of genetically modified foods. In 1999, non-GM products exported to the EU were not allowed to contain 1% of GM products; in 2002, the EU reduced the minimum mark to 0.3%. Japan, Australia, and New Zealand have different regulations for the minimum content of genetically modified ingredients, with a domain value from 5°/. Not waiting.
  • the detection of genetically modified crops is mainly to test whether the sample contains foreign proteins (gene expression products) and whether it contains foreign genes (DNA).
  • Exogenous proteins in transgenic crops can be detected by enzyme-linked immunosorbent assay (ELISA), test strip detection, Wes tern hybridization, etc. based on immunological principles, and the matrix containing the protein of interest is extracted from the sample to be tested according to a certain procedure.
  • the specific binding of the antibody to the protein of interest (antigen) is utilized to generate a detectable signal by coupling the antibody to the antigen-antibody complex.
  • nucleic acid detection in transgenic crops nucleic acid hybridization (SBR), PCR detection.
  • SBR nucleic acid hybridization
  • PCR detection methods are the most important and most accurate methods for detecting transgenic crops, including qualitative PCR methods, complex PCR methods, nested PCR methods, competitive quantitative PCR methods, and fluorescent quantitative PCR methods.
  • the object of the present invention is to disclose a method for rapidly detecting transgenic insect-resistant rice and designing a set of primers according to the sequence of the junction between the foreign gene and the endogenous gene to amplify the turbidity or observe the color after adding SYBR Green. The change or observation of agarose gel electrophoresis results to determine the amplification.
  • the invention provides a transgenic insect-resistant rice detecting method capable of quickly and accurately detecting transgenic rice components in a sample. Compared with conventional qualitative and quantitative PCR methods, it has the advantages of simple operation, high specificity and high sensitivity.
  • outer primer forward sequence 5, - AGGATTCACTGGTGGAGA-3, ,
  • Intrinsic positive sequence 5, - TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC-3', internal primer reverse sequence:
  • Each primer was prepared as a mother liquor at a concentration of ⁇ /L, then 1 ⁇ each of the outer primers, 8 L each of the inner primers, and 2 L of deionized water were sterilized and mixed thoroughly to obtain a primer mixture.
  • the amplification reaction system The total volume of the amplification reaction is 25 ⁇ , and its various components are: 10 ThermoPol Buffer 2.5 ⁇ L, 4 mol/L saponin 6 ⁇ 25 ⁇ L, 0.2 mol/L MgS040.25 L, mixed primer l ⁇ L, 10 ⁇ mol/L dNTPs 3.5 ⁇ L, 8000 U/L Bst DNA polymerase large fragment 1-5 wL, template DNA 1-5 ⁇ , supplemented with sterile deionized water to 25 ⁇ L;
  • the detection method according to the present invention wherein the strand displacement active DNA polymerase is a large fragment of 8000 U/L Bst DNA polymerase.
  • the fluorescent dye of the present invention is 1000 times SYBR Green in an amount of 1 - 2 L.
  • the template A refers to the genome hidden from the sample to be tested.
  • test method of the present invention will now be described in detail.
  • the method uses a novel nucleic acid amplification method, which uses four specific primers and a DNA polymerase with strand displacement activity to amplify nucleic acids at 63 ⁇ -65°C, and the amplification efficiency can be short-time. Up to 10 9 - 10" copies. Highly specific, efficient, fast, easy and so on.
  • primer sequence is as follows: Primer name base number sequence (5' to 3')
  • External primer forward sequence 18 AGGATTCACTGGTGGAGA External primer reverse sequence 20 GATTATCCAAGGAGGTAGCT
  • Inner primer forward sequence 44 TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC Internal primer forward sequence 47 TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA
  • Reactive reagents require strand displacement DNA polymerase, dNTPs, transgenic insect-resistant rice-specific primers, betaine, MgSO 4 and reaction buffer.
  • the reaction is carried out under constant temperature conditions, and the reaction time varies depending on the efficiency of the primer and the mass of the template DNA, and is generally 1 h or less.
  • the addition template should be A, 45-6 Omin at 63-65 °C, and terminated at 80 °C for 2 min.
  • the advantage of this technology is that no thermal cycling is required. Since the amplification is carried out under constant temperature conditions, only a constant temperature water bath or a metal heating block is required to maintain the reaction temperature, and an expensive instrument such as a PCR machine is not required.
  • Reagents large fragment of Bst MA polymerase produced by BioLabs (NEW ENGLAND) and 10 times ThermoPolBuffer solution; specific primer; betaine solution; MgS0 4 solution; dNTPs;
  • Amplification reaction system The total volume of the amplification reaction is 25 L, and its various components and final concentrations are: lO x ThermoPol Buffer 2.5 ⁇ , 4 mol/L betaine 6, 25 ⁇ , 0.2 mol/L MgS0 4 0 ⁇ 25 ⁇ , Primer Mix ⁇ ⁇ , ⁇ /L dNTPs 3. 5 ⁇ , 8000U/L Bst DNA polymerase large fragment l-2 L, template MA b 5 ⁇ , supplemented with sterile deionized water 25 yL.
  • the fluorescent dye SYBR Green can be directly added to the amplification tube, and the reaction tube without amplification reaction is orange under the ultraviolet lamp or the naked eye. Will turn green.
  • the results are shown in Figure 2.
  • the detection can also be judged by evaluating the amount of white precipitate of the amplification by-product magnesium pyrophosphate.
  • a by-product, magnesium pyrophosphate is precipitated, and the amplification or not can be judged by visual observation or by measuring the turbidity of the precipitate in the reaction tube.
  • the amplification template can be only 10 copies or less.
  • Figure 1 shows the electrophoresis analysis of the amplified product; Marker, negative control, negative sample 1, negative sample 2, positive control and positive sample from left to right.
  • Figure 2 is a graph showing the results of adding SYBR Green to the amplified product; the left is a positive control and the right is a negative control.
  • Figure 3 is a graph showing the results of adding SYBR Green to the amplified product; from the left side, it is a positive control, a sample to be tested, and a negative control.
  • Figure 4 is a graph showing the results of adding SYBR Green to the amplified product; from left to right, the negative control, the sample to be tested, the positive control, and the sample to be tested 2 .
  • Figure 5 is an electrophoresis analysis map of the amplified product. From left to right: DL2000 DNA Marker, sample to be tested 1, sample to be tested 2, negative control, positive control.
  • Figure 6 is an agarose gel electrophoresis analysis of Example 4, using the method of the present invention, observed under ultraviolet light, wherein M, DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0. 1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005%; 8, negative control.
  • Figure 7 is an agarose gel electrophoresis analysis of the amplified product of Example 4, a conventionally defined PCR method, and observed under an ultraviolet lamp.
  • M DL2000 DNA Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0.1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005 %; 8, negative control.
  • test method of the present invention will be described in detail below. It should be noted that the primer sequences of the present invention are shown in Table 1.
  • Reagents Bioss (New ENGLAND) Bs t DNA polymerase large fragment and 10 times ThermoPol Buffer solution; specific primer mixture; 4 mol / L betaine solution; 0. 2mol / L MgS04 solution;
  • Amplification reaction system The total volume of the amplification reaction is 25 y L, and its various components are: 10 X ThermoPol Buffer 2. 5 w L, 4 mol / L betaine 6. 25 ⁇ L, 0. 2 mol /L MgS040.25 ⁇ , mixed primer 1 ⁇ 10 ⁇ mol/L dNTPs 3.5 ⁇ L, 8000U/LBst DNA polymerase large fragment lyL, template DNA l L, supplemented with sterile deionized water to 25 ⁇ L, mixed uniformly and centrifuged ;
  • the system solution ⁇ was taken, and the fluorescent dye l L 1000 xSYBR Green was directly added to the amplification tube, and the mixture was shaken and observed by the naked eye.
  • the reaction tube without amplification reaction is orange-yellow, and the reaction tube with amplification reaction will turn green.
  • the results are shown in Fig. 3.
  • the sample to be tested is a positive sample containing the transgenic insect-resistant rice component.
  • Reagents Bst ⁇ A polymerase large fragment and 10 times ThermoPol Buffer solution produced by BioLabs (NEW ENGLAND); specific primer mixture; 4 mol/L betaine solution; 0.2 mol/L MgS04 solution;
  • Amplification reaction system The total volume of the amplification reaction is 25 ⁇ , and its various components are: 10 X ThermoPol Buffer 2.5 ⁇ ⁇ 4 mol/L betaine 6.25 ⁇ L, 0.2 mol/L
  • the sample to be tested 1 is a negative sample, does not contain the transgenic insect-resistant rice component, and the sample 2 contains the transgenic insect-resistant rice component.
  • Reagents Bst MA polymerase large fragment produced by BioLabs (NEW ENGLAND) and 10 times ThermoPol Buffer solution; specific primer mixture; 4 mol/L betaine solution; 0.2 mol/L MgS04 solution;
  • Amplification reaction system The total volume of the amplification reaction is 25 ⁇ , and its various components are: 10 X ThermoPol Buffer 2.5 ⁇ , 1 ⁇ 2ol/L betaine 6 ⁇ 25 ⁇ L, 0.2 mol/L MgS04 0.25 nl , Primer mixture ⁇ , 10 ⁇ mol/L dNTPs 3.5 ⁇ , 8000 U/L Bst DNA polymerase large fragment 2 ⁇ , template DNA 5 ⁇ , supplemented with sterile deionized water to 25 ⁇ , mixed uniformly and centrifuged;
  • Amplification reaction procedure carried out at 63 ° C for 60 min, and kept at 80 ° C for 2 min, 4 ° C, and stored; (4) At the end of the amplification reaction, the system solution was analyzed by electrophoresis on a 2% agarose gel after electrophoresis at 25 ⁇ M. There is no obvious band in the reaction tube without amplification reaction, and a stepped band appears in the reaction tube with amplification reaction. The results are shown in Figure 5. The sample does not contain transgenic insect-resistant rice components.
  • the amplification reaction system of the present invention The total volume of the amplification reaction is 25 L, and its various components are: 10 ThermoPol Buffer 2.5 ⁇ , 4 mol/L betaine 6.25 ⁇ , 0.2 mol/L MgS04 0.25 L, primer Mixture ⁇ ⁇ , 10 ⁇ mol/L dNTPs 3.5 ⁇ , 8000U/LBst DNA polymerase large fragment 2 ⁇ 1 ⁇ , template DNA 5 L, supplemented with sterile deionized water to 25 ⁇ ;
  • the amplification reaction procedure of the present invention is carried out at 63 ° C for 60 min, and kept at 80 ° C for 2 min, 4 ° C, and stored;
  • PCR reaction primers are amplified by a foreign primer in the reaction of the present invention.
  • the PCR reaction was 25 systems, 10 x PCRbuffer (Promega) 2.5 ⁇ , 10 mM dNTPs (Promega) 0.5 ⁇ , upstream and downstream primers (10 mM) each 0.5 ⁇ , Taq enzyme (5 U/ ⁇ , Promega) 0.5 ⁇ , MA template ⁇ , sterilized deionized water 19.5 ⁇ ⁇ reaction procedure pre-denaturation at 95 °C for 5 min; denaturation at 95 °C for 30 s, annealing at 58 °C for 30 s, extension at 72 °C for 30 s, 35 cycles; extension at 72 °C Min.
  • the PCR product was electrophoresed on a 2% agarose gel at 40 V for 40 min and observed by a gel imaging analyzer.
  • the results are shown in Figure 7: M, DL2000 DNA, Marker; 1, 5%; 2, 1 %; 3, 0.5%; 4, 0.1%; 5, 0.05%; 6, 0.01%; 7.0.005%; 8, negative control.
  • the sensitivity of the method of the present invention is significantly higher than that of the PCR method, and the sample having a lower transgenic rice resistance can be detected.

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Abstract

A method for checking insect-resistant transgenic rice comprises: (1) adding 4 specific primers and a DNA polymerase having chain replacement activity to amplify sample DNA template at 63~65℃; and (2) evaluating whether there is amplification reaction or not by visualizing directly the turbidity of deposit in amplification pipe or the color change of SYBR Green adding into amplification pipe.

Description

检测转基因抗虫水稻的方法 技术领域  Method for detecting transgenic insect-resistant rice
本发明属于分子生物学技术领域, 涉及转基因产品的检测方法, 具 体说是一种快速检测转基因抗虫水稻的方法, 通过肉眼观察反应管浊度 或观察加入 1000 X SYBR Green后颜色变化或观察琼脂糖凝胶电泳来判断 扩增情况。  The invention belongs to the technical field of molecular biology, and relates to a detection method of a transgenic product, in particular to a method for rapidly detecting transgenic insect-resistant rice, by visually observing the turbidity of the reaction tube or observing the color change or observing agar after adding 1000 X SYBR Green. Sugar gel electrophoresis was used to determine the amplification.
背景技术  Background technique
转基因工程自 20世纪 70年代诞生以来, 已经取得迅速的发展。 在 1996 ~ 1999年全球共有 12个国家种植转基因农作物。 美国是转基因农作 物种植面积最大的国家,中国居第 4位,但种植面积仅占全球总面积的 1%。 目前转基因生物技术的研究大多分布在抗虫基因工程、 抗病基因工程、 抗逆基因工程、 品盾改良基因工程、 控制发育基因工程等领域。 如抗虫 基因工程将 Bt基因导入棉花、 玉米、 水稻、 烟草、 马铃薯等作物, 毒杀 害虫; 或将胶蛋白晦抑制剂基因导入作物, 干扰害虫消化作用, 而导致 害虫死亡。 中国农科院、 中国农业大学、 中国科学院、 河南农科院等许 多科研单位和高校将几丁质酶和葡聚糖酶双价基因导入小麦育成抗病转 基因小麦、 转基因烟草、 转基因水稻等等。 英国爱丁堡大学将水母发光 基因导入烟草、 芹菜、 马铃薯等作物, 获得发光作物, 驱赶害虫。 总之 在作物种类方面, 大多集中在大豆、 玉米、 棉花、 油菜、 马铃薯、 南瓜、 木瓜、 西葫芦七大类作物。 Genetic engineering since its inception in 20 century 70s, has made rapid development. In 1996-1999, 12 countries around the world planted genetically modified crops. The United States is the country with the largest area of GM crops, and China ranks fourth, but the planting area accounts for only 1% of the global total. At present, most of the research on genetically modified organism technology is distributed in the fields of insect resistance genetic engineering, disease resistance genetic engineering, stress resistance genetic engineering, product shield improvement genetic engineering, and control development genetic engineering. For example, the insect-resistant genetic engineering introduces the Bt gene into crops such as cotton, corn, rice, tobacco, and potatoes, and kills pests; or introduces the peptone inhibitor gene into the crop to interfere with the digestive action of the pest, leading to the death of the pest. Chinese Academy of Agricultural Sciences, China Agricultural University, Chinese Academy of Sciences, Henan Academy of Agricultural Sciences and many other research institutes and universities have introduced chitinase and glucanase bivalent genes into wheat for disease-resistant transgenic wheat, transgenic tobacco, genetically modified rice, etc. . The University of Edinburgh in the UK introduces the jellyfish luminescent gene into crops such as tobacco, celery and potatoes to obtain luminescent crops that drive off pests. In short, in terms of crop types, most of them are concentrated in seven crops of soybean, corn, cotton, rape, potato, pumpkin, papaya and zucchini.
转基因水稻获得成功始于 1986 年, Uchimiya等首先获得了卡那霉素 抗性的转基因水稻愈伤组织,相隔 2 年,世界上就有 3 个实验室分别获得 了转基因水稻植株。 纵观转基因水稻的发展历程,利用转基因技术开展水 稻遗传改良主要集中在下列几个方面:  The success of genetically modified rice began in 1986. Uchimiya and others first obtained kanamycin-resistant transgenic rice calli. Two years later, three laboratories in the world obtained transgenic rice plants. Throughout the development of genetically modified rice, the use of transgenic technology for genetic improvement of rice is mainly concentrated in the following aspects:
1.抗虫性  Insect resistance
应用于水稻抗虫性改良的外源基因主要有 3 种,一是从苏云金杆菌 分离的苏云金杵菌杀虫结晶蛋白基因( Bt 基因) ,二是从植物中分离出 的昆虫蛋白酶抑制剂( PI 基因) ,三是植物凝集素基因。 科学家分别应 用基因枪法、 农杆菌介导法、 电击法等成功地将 cryIA (b)、 crylA (c)基 因导入水稻中,获得了转基因植株,经抗虫性检测,转基因植株对二化螟、 三化螟、大螟、稻纵卷叶螟等具有明显的致死效应。美国康奈尔大学 1993 年将豇豆胰蛋白酶抑制剂基因 CPT导入水稻获得转基因植株,对二化螟、 三化螟具有一定的抗性。 Vain等将半胱氨酸蛋白酶抑制剂基因导入水稻 所得的转基因植株使线虫的孵化率下降了 55 %。 浙江大学应用 Bt 基因 转化育成的 "克螟稻" 已通过了浙江省科技厅的鉴定, 1999 年获准开展 环境释放试验。 There are three kinds of exogenous genes applied to the improvement of insect resistance in rice. One is the insecticidal crystal protein gene (Bt gene) isolated from Bacillus thuringiensis, and the other is an insect protease inhibitor isolated from plants (PI). Gene), the third is the plant lectin gene. The scientists successfully introduced the cryIA (b) and crylA (c) genes into rice by gene gun method, Agrobacterium-mediated method, electric shock method, etc., and obtained transgenic plants, which were tested for insect resistance and transgenic plants against Chilo suppressalis. Sanhua, Daphnia, and rice leaf roller have obvious lethal effects. Cornell University in the United States introduced the cowpea trypsin inhibitor gene CPT into rice in 1993 to obtain transgenic plants, which have certain resistance to stem borer and stem borer. The transgenic plants obtained by introducing a cysteine protease inhibitor gene into rice by Vain et al. reduced the hatching rate of nematodes by 55 %. Zhejiang University's application of Bt gene transformation has been approved by Zhejiang Science and Technology Department and approved in 1999. Environmental release test.
2.抗病 if生  2. Resistance to illness
日本国家农业环境所成功地将水稻条紋叶枯病毒外壳蛋白基因 RS V CP 导入水稻获得转基因植株,接种后 2 ~ 3 周发现转基因植株只有 2% ~ 3 %发病,而对照则有 95% ~ 100%发病。  The National Agricultural Environment Institute of Japan successfully introduced the rice stripe virus coat protein gene RS V CP into rice to obtain transgenic plants. Two to three weeks after inoculation, only 2% to 3% of the transgenic plants were found, while the control was 95%. 100% of the onset.
Chr i s tou 等将 Xa21 基因导入水稻后,显著提高了水稻对白叶枯病 和稻瘟病的抗性。 何迎春等将烟草几丁质酶基因导入水稻获得了高抗紋 枯病和稻瘟病转基因植林。 四川农业大学将抗病和抗虫基因导入杂交稻 的恢复系中, 获得了转基因的双抗杂交稻等。  When Chr i s tou introduced the Xa21 gene into rice, it significantly increased the resistance of rice to bacterial blight and rice blast. He Yingchun et al. introduced tobacco chitinase gene into rice to obtain high resistance to rice sheath blight and rice blast disease transgenic plantation. Sichuan Agricultural University introduced the disease-resistant and insect-resistant genes into the restorer line of hybrid rice, and obtained the transgenic double-resistant hybrid rice.
3.抗除草剂  3. Herbicide resistance
20 世纪 80 年代,美国孟山都公司以其拥有广镨、 高效除草剂农达 (草甘膦) 的优势,率先开展除草剂抗性基因的转移研究与抗性品种的开 发,随后,美国艾格福公司(AgrEvo) 抗广谱除草剂草铵膦转基因水稻和 美国氰胺公司的抗咪唾啉酮类除草剂转基因水稻相继问世。 中国用于水 稻抗除草剂的基因主要是 PPT 乙酰转移酶基因,即抗 Bas ta基因(bar) , 目前也已获得抗 Bas t a 水稻。  In the 1980s, Monsanto Company of the United States took the lead in carrying out the research on the transfer of herbicide resistance genes and the development of resistant varieties with the advantage of its vast and efficient herbicide Roundup (glyphosate). Subsequently, Aegford Company of the United States (AgrEvo) Anti-microbial herbicide glufosinate-transgenic rice and American cyanamide-based anti-imidazolinone herbicide transgenic rice have been introduced. The Chinese herbicide-tolerant gene is mainly the PPT acetyltransferase gene, which is the anti-bas ta gene (bar), and has also been obtained against Bas t a rice.
一 4.抗逆性  a 4. Stress resistance
由于有关水稻抗逆基因的定位、 克隆和分离工作难度较大,抗逆转基 因水稻的研究报道还不多。 目前已经导入水稻的抗逆基因主要有烟草中 的 CM0基因、 甜菜碱生物合成酶基因 codA和水稻耐淹能力有关的基因 ( pdc , pdc , pdc) ,将其转入水稻中分别获得了具有抗旱、 耐碱、 耐 盐和耐渍的转基因水稻植株。  Due to the difficulty in mapping, cloning and isolating the rice stress-tolerant genes, there are few reports on the anti-reversion gene rice. The stress-resistant genes that have been introduced into rice are mainly the CM0 gene in tobacco, the betaine biosynthetic enzyme gene codA and the rice flood-tolerant genes (pdc, pdc, pdc), which are transferred to rice to obtain drought resistance. , alkali-tolerant, salt-tolerant and stain-tolerant transgenic rice plants.
5.高产和优盾性状  5. High yield and excellent shield traits
产量和品质是由多基因控制的综合性状,个别外源基因的导入只能 使其组成成分中单一因子的水平获得提高,而对其综合水平没有明显的 影响。 目前提高水稻产量的基因工程主要设想是将高光效 C4 植物的磷酸 烯醇式丙酮酸羧化酶 (PEPC) 和二磷酸核酮糖羧化酶基因( RuB pC)导入 水稻中,在水稻叶片的叶绿体中表达以提高水稻光合效率,达到增加产量 的目的。 虽然 Ku 等将 PEPC基因导入水稻,获得了光合效率提高近 50 % 的转基因水稻,但离获得高产品种还相距甚远,只是为水稻大幅度增产带 来了新的希望。 在品质改良方面,富脯氨酸基因、 富甲硫氨酸和赖氨酸基 因、 八氢番茄合成酶及其脱氢酶基因、 大豆球蛋白基因和高赖氨酸基因 等都已被成功地导入水稻并获得了转基因植株,对于开发特用稻米产品 具有非常重要的意义。  Yield and quality are comprehensive traits controlled by multiple genes. The introduction of individual foreign genes can only increase the level of a single factor in their constituents, but has no significant effect on their comprehensive levels. The current genetic engineering for improving rice yield is to introduce phosphoenolpyruvate carboxylase (PEPC) and ribulose carboxyphosphate synthase gene (RuB pC) from high-efficiency C4 plants into rice, in rice leaves. Expression in chloroplasts to increase photosynthetic efficiency of rice and increase yield. Although Ku et al. introduced the PEPC gene into rice, and obtained transgenic rice with an increase in photosynthetic efficiency of nearly 50%, it was far from being a high-yield variety, but it brought new hope for a large increase in rice production. In terms of quality improvement, proline-rich genes, methionine-rich and lysine genes, octahydrotoxin synthase and its dehydrogenase genes, glycinin genes and high-lysine genes have been successfully The introduction of rice and the acquisition of transgenic plants are of great importance for the development of special rice products.
随着大量转基因作物逐步走向市场, 转基因作物和转基因作物加工 的食物的安全性问题也开始受到人们的关注。 从本质上讲, 转基因作物 和常规育成的作物品种没有差别。 常规育种一般是通过有性杂交来实现, 而植物基因工程则是用农杆菌、 基因枪、 电激、 微注射等技术将外源重 组 DNA导入植物基因组中。 尽管从理论上讲, 转基因的遗传特性及表型应 该可以更加精确的预测, 在应用上更加安全, 但对转基因作物进行安全 性评估仍然很有必要。 As a large number of GM crops are gradually coming to market, the safety of foods processed by GM crops and GM crops has begun to receive attention. Essentially, genetically modified crops There is no difference between the crop varieties that are conventionally cultivated. Conventional breeding is generally achieved by sexual hybridization, while plant genetic engineering is the introduction of exogenous recombinant DNA into the plant genome using techniques such as Agrobacterium, gene gun, electroporation, and microinjection. Although in theory, the genetic characteristics and phenotype of genetically modified organisms should be more accurately predicted and safer to apply, it is still necessary to assess the safety of genetically modified crops.
欧盟最早提出对转基因食品进行标识管理。 1999年, 要求出口到欧 盟的非转基因产品不得含有 1%的转基因产品污染; 2002年, 欧盟将标识 的最低限量降低到 0. 9%。 日本、 澳大利亚、 新西兰对转基因成分的最低 含量做了不同规定, 域值从 5°/。不等。  The EU first proposed the label management of genetically modified foods. In 1999, non-GM products exported to the EU were not allowed to contain 1% of GM products; in 2002, the EU reduced the minimum mark to 0.3%. Japan, Australia, and New Zealand have different regulations for the minimum content of genetically modified ingredients, with a domain value from 5°/. Not waiting.
我国于 2001年 5月 9日公布并实施《农业转基因生物安全管理条例》, 于 2002年 1月 5 日公布了农业转基因生物安全评价、 标识和进口安全管 理三个配套管理办法, 确定了第一批实施标识管理的农业转基因生物目 录, 并于 2002年 3月 20日起正式实施。  On May 9, 2001, China promulgated and implemented the Regulations on the Safety Management of Agricultural Genetically Modified Organisms. On January 5, 2002, China announced the three supporting management methods for the safety evaluation, identification and import safety management of agricultural genetically modified organisms. The catalogue of agricultural genetically modified organisms managed by the label was implemented in batches and officially implemented on March 20, 2002.
转基因作物的检测主要是检测样品是否含有外源蛋白质 (基因表达 产物)和是否含有外源基因 ( DNA )。 转基因作物中外源蛋白可以利用基 于免疫学原理的酶联免疫吸附法(ELISA )、 试纸条检测、 Wes tern杂交等 方法检测, 主要从待测样品中按照一定的程序抽提含有目的蛋白的基质, 利用抗体与目的蛋白 (抗原)特异结合的特性, 通过偶联抗体与抗原抗 体复合物的作用产生可检测的信号。 转基因作物的核酸检测方法主要有 两种: 核酸分子杂交技术(Sourthern blot ), PCR检测技术。 目前, PCR 检测方法是最主要、最准确地检测转基因作物的方法, 包括定性 PCR方法、 复合 PCR方法、 巢式 PCR方法、 竟争性定量 PCR方法、 荧光定量 PCR方法等。  The detection of genetically modified crops is mainly to test whether the sample contains foreign proteins (gene expression products) and whether it contains foreign genes (DNA). Exogenous proteins in transgenic crops can be detected by enzyme-linked immunosorbent assay (ELISA), test strip detection, Wes tern hybridization, etc. based on immunological principles, and the matrix containing the protein of interest is extracted from the sample to be tested according to a certain procedure. The specific binding of the antibody to the protein of interest (antigen) is utilized to generate a detectable signal by coupling the antibody to the antigen-antibody complex. There are two main methods for nucleic acid detection in transgenic crops: nucleic acid hybridization (SBR), PCR detection. At present, PCR detection methods are the most important and most accurate methods for detecting transgenic crops, including qualitative PCR methods, complex PCR methods, nested PCR methods, competitive quantitative PCR methods, and fluorescent quantitative PCR methods.
国内外推广使用的是定性 PCR和实时定量 PCR检测方法。  Qualitative PCR and real-time quantitative PCR detection methods are widely used at home and abroad.
发明内容  Summary of the invention
本发明的目的在于公开一种快速检测转基因抗虫水稻的方法及根据 外源基因与内源基因接合处序列设计一套引物对其进行扩增, 通过肉眼 观察浊度或观察加入 SYBR Green后颜色的变化或观察琼脂糖凝胶电泳结 果判断扩增情况。  The object of the present invention is to disclose a method for rapidly detecting transgenic insect-resistant rice and designing a set of primers according to the sequence of the junction between the foreign gene and the endogenous gene to amplify the turbidity or observe the color after adding SYBR Green. The change or observation of agarose gel electrophoresis results to determine the amplification.
本发明提供的一种转基因抗虫水稻检测方法 , 能够快速、 准确的检 测样品中转基因水稻成分。 与常规的定性、 定量 PCR方法相比, 具有操作 简单、 特异性高、 灵敏度强的优势。  The invention provides a transgenic insect-resistant rice detecting method capable of quickly and accurately detecting transgenic rice components in a sample. Compared with conventional qualitative and quantitative PCR methods, it has the advantages of simple operation, high specificity and high sensitivity.
本发明的技术方案如下:  The technical solution of the present invention is as follows:
—种用于检测转基因抗虫水稻的特异性引物,  a specific primer for detecting transgenic insect-resistant rice,
其中外引物正向序列: 5, - AGGATTCACTGGTGGAGA-3, ,  Wherein the outer primer forward sequence: 5, - AGGATTCACTGGTGGAGA-3, ,
外引物反向序列: 5, -GATTATCCAAGGAGGTAGCT-3 ' ;  External primer reverse sequence: 5, -GATTATCCAAGGAGGTAGCT-3 ';
内因物正向序列: 5, - TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC- 3' , 内引物反向序列: Intrinsic positive sequence: 5, - TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC-3', internal primer reverse sequence:
5, -TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA-3' 。 每条引物分别配制成浓度为 ΙΟΟμιηοΙ/L的母液, 然后取外引物各 1 μΐ, 内引物各 8 L, 灭菌去离子水 2 L, 充分混合, 为引物混合液。  5, -TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA-3'. Each primer was prepared as a mother liquor at a concentration of ΙΟΟμιηοΙ/L, then 1 μΐ each of the outer primers, 8 L each of the inner primers, and 2 L of deionized water were sterilized and mixed thoroughly to obtain a primer mixture.
本发明的采用上述一套引物进行检测转基因抗虫水稻的方法, 其特 征在于包括如下步骤:  The method for detecting transgenic insect-resistant rice using the above set of primers of the present invention is characterized in that the following steps are included:
( 1 )采用权利要求 1所述的 4条特异 '引物及一种具有链置换活性的 匪 A聚合酶, 加入模板 DNA, 在 63- 65 °C进行 45- 60min, 并且在 8GX持 续 2min, 4°C保存;  (1) using the four specific 'primers' and one of the 匪A polymerases having strand displacement activity according to claim 1, adding template DNA, at 63-65 ° C for 45-60 min, and at 8 GX for 2 min, 4 °C preservation;
其中的扩增反应体系: 扩增反应的总体积为 25 μί, 其各种成分分别 为: 10 ThermoPol Buffer 2.5 μ L, 4mol/L甜茱碱 6· 25 μ L, 0.2mol/L MgS040.25 L, 混合引物 l^L, 10 μ mol/L dNTPs 3.5 μ L, 8000U/L Bst DNA 聚合酶大片段 1-5 wL, 模板 DNA 1-5 μί, 用灭菌去离子水补齐至 25 μ L;  The amplification reaction system: The total volume of the amplification reaction is 25 μί, and its various components are: 10 ThermoPol Buffer 2.5 μ L, 4 mol/L saponin 6 · 25 μ L, 0.2 mol/L MgS040.25 L, mixed primer l^L, 10 μmol/L dNTPs 3.5 μL, 8000 U/L Bst DNA polymerase large fragment 1-5 wL, template DNA 1-5 μί, supplemented with sterile deionized water to 25 μ L;
(2)扩增反应结束,取体系液 3-25yL,采用不同方法判断扩增与否, 包括: 直接向扩增管中加入荧光染料 SYBR Green, 通过颜色变化观察有 无扩增反应; 或评估扩增副产物焦磷酸镁白色沉淀物的量来观察有无扩 增反应; 或通过观察琼脂糖凝胶电泳条带判断扩增结果。  (2) At the end of the amplification reaction, take the system solution 3-25 yL, and judge the amplification by different methods, including: directly adding the fluorescent dye SYBR Green to the amplification tube, and observe whether there is amplification reaction through color change; or evaluation The amount of the white precipitate of magnesium pyrophosphate as a by-product was amplified to observe the presence or absence of an amplification reaction; or the amplification result was judged by observing an agarose gel electrophoresis band.
本发明所述的检测方法, 其中所述的链置换活性的 DNA聚合酶为 8000U/L Bst DNA聚合酶大片段卜 2 L。  The detection method according to the present invention, wherein the strand displacement active DNA polymerase is a large fragment of 8000 U/L Bst DNA polymerase.
本发明所述的荧光染料为 1000倍 SYBR Green, 加入量为 1- 2 L。 本发明所述的检测方法, 模板應 A指的是从待测样品中提取的基因 组隱。  The fluorescent dye of the present invention is 1000 times SYBR Green in an amount of 1 - 2 L. In the detection method of the present invention, the template A refers to the genome hidden from the sample to be tested.
为了能更加清楚的说明本发明的测定方法, 下面对本发明的试验方 法故以详细的说明。  In order to more clearly illustrate the measurement method of the present invention, the test method of the present invention will now be described in detail.
1.原理  Principle
本方法应用一种新型的核酸扩增方法, 其原理是采用 4条特异引物及 一种具有链置换活性的 DNA聚合酶, 在 63Ό- 65°C对核酸进行扩增, 短时 间扩增效率可达到 109- 10"个拷贝。 具有高特异性、 高效性、 快速、 简便 等特点。 The method uses a novel nucleic acid amplification method, which uses four specific primers and a DNA polymerase with strand displacement activity to amplify nucleic acids at 63Ό-65°C, and the amplification efficiency can be short-time. Up to 10 9 - 10" copies. Highly specific, efficient, fast, easy and so on.
2.引物设计  2. Primer design
本研究依据转基因抗虫水稻外源基因与内源基因结合处序列设计了 4条引物。 引物由大连宝生物公司合成。  In this study, four primers were designed based on the sequence of the foreign gene of transgenic insect-resistant rice and the endogenous gene. Primers were synthesized by Dalian Bao Biotech.
表 1 引物序列表如下: 引物名称 碱基数 序列(5' to 3') Table 1 The primer sequence is as follows: Primer name base number sequence (5' to 3')
外引物正向序列 18 AGGATTCACTGGTGGAGA 外引物反向序列 20 GATTATCCAAGGAGGTAGCT  External primer forward sequence 18 AGGATTCACTGGTGGAGA External primer reverse sequence 20 GATTATCCAAGGAGGTAGCT
内引物正向序列 44 TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC 内引物正向序列 47 TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA Inner primer forward sequence 44 TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC Internal primer forward sequence 47 TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA
3.反应条件 3. Reaction conditions
反应试剂需要链置换型 DNA聚合酶、 dNTPs、 转基因抗虫水稻特异性 引物、 甜菜碱、 MgS04和反应缓冲液。 反应在恒温条件下进行, 反应时间 依据引物的效率和模板 DNA质量变化, 一般为 lh或更少。 加入模板應 A, 在 63- 65 °C进行 45-6 Omin, 并且在 80°C, 持续 2min而终止。 Reactive reagents require strand displacement DNA polymerase, dNTPs, transgenic insect-resistant rice-specific primers, betaine, MgSO 4 and reaction buffer. The reaction is carried out under constant temperature conditions, and the reaction time varies depending on the efficiency of the primer and the mass of the template DNA, and is generally 1 h or less. The addition template should be A, 45-6 Omin at 63-65 °C, and terminated at 80 °C for 2 min.
这项技术的优点就是不需要热循环。 由于扩增是在恒温条件下进行 的, 因此仅需要恒温水浴锅或金属加热块维持反应温度, 不需要 PCR仪等 昂贵的仪器。  The advantage of this technology is that no thermal cycling is required. Since the amplification is carried out under constant temperature conditions, only a constant temperature water bath or a metal heating block is required to maintain the reaction temperature, and an expensive instrument such as a PCR machine is not required.
材料与方法:  Materials and Methods:
( 1 )试剂: BioLabs (NEW ENGLAND )生产的 Bst MA聚合酶大片段和 10倍 ThermoPolBuffer溶液;特异性引物;甜菜碱溶液; MgS04溶液; dNTPs; (1) Reagents: large fragment of Bst MA polymerase produced by BioLabs (NEW ENGLAND) and 10 times ThermoPolBuffer solution; specific primer; betaine solution; MgS0 4 solution; dNTPs;
( 2 )扩增反应体系: 扩增反应的总体积为 25 L, 其各种成分及终浓 度分别为: lO x ThermoPol Buffer 2.5 μΐ, 4mol/L甜菜碱 6, 25 μί, 0.2mol/L MgS04 0· 25 μί, 引物混合液 Ι μί, ΙΟμπιοΙ/L dNTPs 3. 5 μΐ, 8000U/L Bst DNA聚合酶大片段 l-2 L, 模板 MA卜 5 μί, 用灭菌去离子 水补齐至 25 yL。 (2) Amplification reaction system: The total volume of the amplification reaction is 25 L, and its various components and final concentrations are: lO x ThermoPol Buffer 2.5 μΐ, 4 mol/L betaine 6, 25 μί, 0.2 mol/L MgS0 4 0· 25 μί, Primer Mix Ι μί, ΙΟμπιοΙ/L dNTPs 3. 5 μΐ, 8000U/L Bst DNA polymerase large fragment l-2 L, template MA b 5 μί, supplemented with sterile deionized water 25 yL.
( 3)扩增反应过程: 在 63- 65 °C进行 45- 60min, 并且在 80°C持续 2min, 4°C保存;  (3) Amplification reaction process: 45-60 min at 63-65 °C, and kept at 80 °C for 2 min, stored at 4 °C;
( 4 )扩增反应结束, 取体系液 3-25 用不同的检测方法判断扩增与 否。  (4) At the end of the amplification reaction, take the system solution 3-25 to determine whether the amplification is performed by different detection methods.
4.扩增结果观察  4. Observation of amplification results
有三种观察方法, 适合不同情况下进行'.  There are three observation methods that are suitable for different situations.
1 )使用 2%琼脂糖凝胶, 加入 EB染色剂, 100V电泳 50min, 在紫外灯 下观察。 因为反应会产生各种片断长度的茎环结构的扩增产物, 所以在 电泳图谱中显示为从点样孔处开始的弥散和阶梯状条带现象。 结果见图 L  1) Using a 2% agarose gel, adding EB stain, electrophoresis at 100 V for 50 min, observed under UV light. Since the reaction produces an amplification product of the stem-loop structure of various fragment lengths, it is shown in the electropherogram as a dispersion and a step-like band phenomenon from the spotting hole. Results are shown in Figure L
2 ) 由于反应形成大量双链 DNA产物, 所以可直接向扩增管中加入荧 光染料 SYBR Green, 紫外灯下或肉眼观察, 无扩增反应的反应管呈橙色, 有扩增反庄的反应管将变为绿色。 结果见图 2。 3 )检测还可以通过评估扩增副产物焦磷酸镁的白色沉淀物的量来判 断。 在反应中, 在大量 DNA合成时, 产生副产物——焦磷酸镁沉淀, 可以 用肉眼观察或法度仪检测反应管中的沉淀浊度就能够判断扩增与否。 2) Since the reaction forms a large amount of double-stranded DNA product, the fluorescent dye SYBR Green can be directly added to the amplification tube, and the reaction tube without amplification reaction is orange under the ultraviolet lamp or the naked eye. Will turn green. The results are shown in Figure 2. 3) The detection can also be judged by evaluating the amount of white precipitate of the amplification by-product magnesium pyrophosphate. In the reaction, when a large amount of DNA is synthesized, a by-product, magnesium pyrophosphate, is precipitated, and the amplification or not can be judged by visual observation or by measuring the turbidity of the precipitate in the reaction tube.
本发明用于转基因抗虫水稻检测的扩增方法, 具有以下优点:  The amplification method of the invention for detecting transgenic insect-resistant rice has the following advantages:
1) 操作简便: 不需要热循环步骤, 只需一恒定温度就能反应。  1) Easy to operate: No thermal cycling step is required, and only a constant temperature is required to react.
2 )高特异性'. 该技术由 4条引物扩增耙序列的 6个区段, 因此具有高 度特异性。  2) High specificity'. This technique amplifies 6 segments of the 耙 sequence by 4 primers and is therefore highly specific.
3) 快速高效:整个扩增不到 lh即可完成,产量可达到 109-10lfl个拷贝;3) Fast and efficient: the whole amplification can be completed in less than lh, and the output can reach 10 9 -10 lfl copies;
4) 灵敏度高: 扩增模板可仅为 10拷贝甚至更少。 4) High sensitivity: The amplification template can be only 10 copies or less.
5) 鉴定筒便: 可以用肉眼直接观察反应管内沉淀的浊度或者通过 5) Identification of the cartridge: The turbidity of the precipitate in the reaction tube can be directly observed with the naked eye or passed
SYBR Green颜色变化判断扩增与否。 SYBR Green color change judges whether amplification or not.
附图说明  DRAWINGS
图 1为扩增产物的电泳分析图谱; 自左向右依次为 Marker、阴性对照、 阴性样品 1、 阴性样品 2、 阳性对照和阳性样品。  Figure 1 shows the electrophoresis analysis of the amplified product; Marker, negative control, negative sample 1, negative sample 2, positive control and positive sample from left to right.
图 2为扩增产物加入 SYBR Green结果图; 左为阳性对照, 右为阴性对 照。  Figure 2 is a graph showing the results of adding SYBR Green to the amplified product; the left is a positive control and the right is a negative control.
图 3为扩增产物加入 SYBR Green结果图; 从左边依次为阳性对照、 待 测样品、 阴性对照。  Figure 3 is a graph showing the results of adding SYBR Green to the amplified product; from the left side, it is a positive control, a sample to be tested, and a negative control.
图 4为扩增产物加入 SYBR Green结果图; 由左至右为阴性对照、 待测 样品 1、 阳性对照和待测样品 2Figure 4 is a graph showing the results of adding SYBR Green to the amplified product; from left to right, the negative control, the sample to be tested, the positive control, and the sample to be tested 2 .
图 5为扩增产物的电泳分析图谱。 由左至右: DL2000 DNA Marker, 待测样品 1、 待测样品 2、 阴性对照、 阳性对照。  Figure 5 is an electrophoresis analysis map of the amplified product. From left to right: DL2000 DNA Marker, sample to be tested 1, sample to be tested 2, negative control, positive control.
图 6为实施例 4 , 采用本发明方法扩增产物的琼脂糖凝胶电泳分析, 紫外灯下观察结果, 其中 M,DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0. 1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005%; 8,阴性对照。  Figure 6 is an agarose gel electrophoresis analysis of Example 4, using the method of the present invention, observed under ultraviolet light, wherein M, DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0. 1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005%; 8, negative control.
图 7为实施例 4 , 常规定性 PCR方法扩增产物的琼脂糖凝胶电泳分析, 紫外灯下观察结果。 其中 M,DL2000 DNA Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0. 1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005%; 8,阴性对照。  Figure 7 is an agarose gel electrophoresis analysis of the amplified product of Example 4, a conventionally defined PCR method, and observed under an ultraviolet lamp. Wherein M, DL2000 DNA Marker; 1, 5%; 2, 1%; 3, 0. 5%; 4, 0.1%; 5, 0. 05%; 6, 0. 01%; 7, 0. 005 %; 8, negative control.
为了能更加清楚的说明本发明的方法, 下面对本发明的试验方法做 以详细的说明, 在此需加以说明的是: 本发明所述的引物序列见表 1。  In order to more clearly illustrate the method of the present invention, the test method of the present invention will be described in detail below. It should be noted that the primer sequences of the present invention are shown in Table 1.
实施例 1 :  Example 1
( 1 )试剂: BioLabs ( NEW ENGLAND )生产的 Bs t DNA聚合酶大片段 和 10倍 ThermoPol Buffer溶液; 特异性引物混合液; 4mol /L甜菜碱溶液;. 0. 2mol /L MgS04溶液;  (1) Reagents: Bioss (New ENGLAND) Bs t DNA polymerase large fragment and 10 times ThermoPol Buffer solution; specific primer mixture; 4 mol / L betaine solution; 0. 2mol / L MgS04 solution;
( 2 )扩增反应体系: 扩增反应的总体积为 25 y L, 其各种成分分别 为: 10 X ThermoPol Buffer 2. 5 w L, 4mol /L甜菜碱 6. 25 μ L, 0. 2mol /L MgS040.25 μΐ, 混合引物 1μ 10 μ mol/L dNTPs 3.5 μ L, 8000U/LBst DNA聚合酶大片段 lyL, 模板 DNA l L, 用灭菌去离子水补齐至 25 μ L, 混合均匀后离心; (2) Amplification reaction system: The total volume of the amplification reaction is 25 y L, and its various components are: 10 X ThermoPol Buffer 2. 5 w L, 4 mol / L betaine 6. 25 μ L, 0. 2 mol /L MgS040.25 μΐ, mixed primer 1μ 10 μmol/L dNTPs 3.5 μL, 8000U/LBst DNA polymerase large fragment lyL, template DNA l L, supplemented with sterile deionized water to 25 μL, mixed uniformly and centrifuged ;
( 3)扩增反应程序: 在 63°C进行 60min, 并且在 80°C保温 2min, 4°C, 保存;  (3) Amplification reaction procedure: 60 ° C for 60 min, and kept at 80 ° C for 2 min, 4 ° C, and stored;
(4)扩增反应结束, 取体系液 ΙΟμί, 直接向扩增管中加入荧光染 料 l L 1000 xSYBR Green, 振荡混匀, 肉眼观察结果。 无扩增反应的反 应管呈橙黄色,有扩增反应的反应管将变为绿色。结果见图 3, 由图可见, 待测样品为阳性样品, 含有转基因抗虫水稻成份。  (4) At the end of the amplification reaction, the system solution ΙΟμί was taken, and the fluorescent dye l L 1000 xSYBR Green was directly added to the amplification tube, and the mixture was shaken and observed by the naked eye. The reaction tube without amplification reaction is orange-yellow, and the reaction tube with amplification reaction will turn green. The results are shown in Fig. 3. As can be seen from the figure, the sample to be tested is a positive sample containing the transgenic insect-resistant rice component.
实施例 2:  Example 2:
(1)试剂: BioLabs (NEW ENGLAND )生产的 Bst 丽 A聚合酶大片段 和 10倍 ThermoPol Buffer溶液; 特异性引物混合液; 4mol/L甜菜碱溶液; 0.2mol/L MgS04溶液;  (1) Reagents: Bst 丽 A polymerase large fragment and 10 times ThermoPol Buffer solution produced by BioLabs (NEW ENGLAND); specific primer mixture; 4 mol/L betaine solution; 0.2 mol/L MgS04 solution;
(2)扩增反应体系: 扩增反应的总体积为 25 μί, 其各种成分分别 为: 10 X ThermoPol Buffer 2.5 μ ΐ 4mol/L甜菜碱 6.25 μ L, 0.2mol/L (2) Amplification reaction system: The total volume of the amplification reaction is 25 μί, and its various components are: 10 X ThermoPol Buffer 2.5 μ ΐ 4 mol/L betaine 6.25 μL, 0.2 mol/L
MgS04 0.25 uL, 引物混合液 ΙμΙ^ , 10 μ mol/L dNTPs 3.5 μΐ, 8000U/L Bst DNA聚合酶大片段 2 L, 模板 DNA 2 μΐ, 用灭菌去离子水补齐至 25 ixl, 混合均匀后离心; MgS04 0.25 uL, primer mix ΙμΙ^, 10 μmol/L dNTPs 3.5 μΐ, 8000 U/L Bst DNA polymerase large fragment 2 L, template DNA 2 μΐ, supplemented with sterile deionized water to 25 ixl, mixed evenly After centrifugation;
( 3)扩增反应程序: 在 65°C进行 45min, 并且在 80°C保温 2min, 4°C, 保存;  (3) Amplification reaction procedure: 45 ° C for 45 min, and kept at 80 ° C for 2 min, 4 ° C, preservation;
(4)扩增反应结束, 取体系液 15 L, 直接向扩增管中加入荧光染 料 2yL lOOOxSYBR Green, 震荡混匀, 肉眼观察结果。 无扩增反应的反 应管呈橙黄色, 有扩增反应的反应管将变为绿色。 结果见图 4, 由图可以 看出, 待测样品 1为阴性样品, 不含有转基因抗虫水稻成分, 样品 2含有 转基因抗虫水稻成分。  (4) At the end of the amplification reaction, 15 L of the system solution was taken, and the fluorescent dye 2yL lOOOxSYBR Green was directly added to the amplification tube, and the mixture was shaken and observed by the naked eye. The reaction tube without amplification reaction is orange-yellow, and the reaction tube with amplification reaction will turn green. The results are shown in Fig. 4. As can be seen from the figure, the sample to be tested 1 is a negative sample, does not contain the transgenic insect-resistant rice component, and the sample 2 contains the transgenic insect-resistant rice component.
实施例 3:  Example 3:
(1)试剂: BioLabs (NEW ENGLAND )生产的 Bst MA聚合酶大片段 和 10倍 ThermoPol Buffer溶液; 特异性引物混合液; 4mol/L甜菜碱溶液; 0.2mol/L MgS04溶液;  (1) Reagents: Bst MA polymerase large fragment produced by BioLabs (NEW ENGLAND) and 10 times ThermoPol Buffer solution; specific primer mixture; 4 mol/L betaine solution; 0.2 mol/L MgS04 solution;
(2)扩增反应体系: 扩增反应的总体积为 25 μί, 其各种成分分别 为: 10 X ThermoPol Buffer 2.5 μί, ½ol/L甜菜碱 6· 25 μ L, 0.2mol/L MgS04 0.25 nl, 引物混合液 Ιμίί , 10 μ mol/L dNTPs 3.5 μΐ, 8000U/L Bst DNA聚合酶大片段 2 μί, 模板 DNA 5 μΐ, 用灭菌去离子水 补齐至 25 μΐ, 混合均匀后离心;  (2) Amplification reaction system: The total volume of the amplification reaction is 25 μί, and its various components are: 10 X ThermoPol Buffer 2.5 μί, 1⁄2ol/L betaine 6 · 25 μ L, 0.2 mol/L MgS04 0.25 nl , Primer mixture Ιμίί , 10 μmol/L dNTPs 3.5 μΐ, 8000 U/L Bst DNA polymerase large fragment 2 μί, template DNA 5 μΐ, supplemented with sterile deionized water to 25 μΐ, mixed uniformly and centrifuged;
(3)扩增反应程序: 在 63°C进行 60min, 并且在 80°C保温 2min, 4°C, 保存; (4)扩增反应结束, 取体系液 25 μΐ^经 2%琼脂糖凝胶电泳分析, 紫 外灯下观察结果。 无扩增反应的反应管无明显条带, 有扩增反应的反应 管出现阶梯状条带。 结果见图 5, 样品不含有转基因抗虫水稻成分。 (3) Amplification reaction procedure: carried out at 63 ° C for 60 min, and kept at 80 ° C for 2 min, 4 ° C, and stored; (4) At the end of the amplification reaction, the system solution was analyzed by electrophoresis on a 2% agarose gel after electrophoresis at 25 μM. There is no obvious band in the reaction tube without amplification reaction, and a stepped band appears in the reaction tube with amplification reaction. The results are shown in Figure 5. The sample does not contain transgenic insect-resistant rice components.
实施例 4:  Example 4:
对比实验: 转基因抗虫水稻的定性 PCR测定方法与本发明的测定方法 的对比:  Comparative experiment: Qualitative PCR assay of transgenic insect-resistant rice and comparison with the assay method of the present invention:
( 1 )本发明方法试剂: BioLabs (NEW ENGLAND )生产的 Bst DNA聚 合酶大片段和 10倍 ThernioPol Buffer溶液;特异性引物混合液; ½ol/L甜 菜碱溶液; 0.2mol/L MgS04溶液; DNA模板包括含有转基因抗虫水稻成份 5%、 1%、 0.5%、 0.1%、 0.05%、 0.01%, 0.005%, 0.001%的样品。  (1) Reagents of the method of the present invention: large fragment of Bst DNA polymerase produced by BioLabs (NEW ENGLAND) and 10 times of ThernioPol Buffer solution; specific primer mixture; 1⁄2ol/L betaine solution; 0.2 mol/L MgS04 solution; DNA template Includes samples containing 5%, 1%, 0.5%, 0.1%, 0.05%, 0.01%, 0.005%, 0.001% of transgenic insect-resistant rice ingredients.
(2)本发明扩增反应体系: 扩增反应的总体积为 25 L, 其各种成 分分别为: 10 ThermoPol Buffer 2.5 μΐ, 4mol/L甜菜碱 6.25 μΐ, 0.2mol/L MgS04 0.25 L, 引物混合液 Ι μί, 10 μ mol/L dNTPs 3.5 μΐ, 8000U/LBst DNA聚合酶大片段 2μ1^, 模板 DNA 5 L, 用灭菌去离子水补 齐至 25μί ;昆合均匀后离心;  (2) The amplification reaction system of the present invention: The total volume of the amplification reaction is 25 L, and its various components are: 10 ThermoPol Buffer 2.5 μΐ, 4 mol/L betaine 6.25 μΐ, 0.2 mol/L MgS04 0.25 L, primer Mixture Ι μί, 10 μmol/L dNTPs 3.5 μΐ, 8000U/LBst DNA polymerase large fragment 2μ1^, template DNA 5 L, supplemented with sterile deionized water to 25μί;
( 3)本发明扩增反应程序:在 63°C进行 60min,并且在 80°C保温 2min, 4°C, 保存;  (3) The amplification reaction procedure of the present invention is carried out at 63 ° C for 60 min, and kept at 80 ° C for 2 min, 4 ° C, and stored;
(4)本发明扩增反应结束, 取体系液 3μί, 经 2%琼脂糖凝胶电泳分 析, 紫外灯下观察结果。 无扩增反应的反应管无明显条带, 有扩增反应 的反应管出现阶梯状条带。 结果见图 6: Μ, DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0.5%; 4, 0.1°/。; 5, 0.05%; 6, 0.01%; 7, 0.005°/。; 8,阴性对照。  (4) The amplification reaction of the present invention was completed, and 3 μί of the system solution was taken, and analyzed by 2% agarose gel electrophoresis, and the result was observed under an ultraviolet lamp. There is no obvious band in the reaction tube without amplification reaction, and a stepped band appears in the reaction tube with amplification reaction. The results are shown in Figure 6: Μ, DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0.5%; 4, 0.1°/. 5, 0.05%; 6, 0.01%; 7, 0.005°/. ; 8, negative control.
(5)定性 PCR方法: PCR反应引物采用本发明反应中一对外引物对目 的片断进行扩增。 PCR反应为 25 体系, 10 xPCRbuffer (Promega) 2.5 μΐ, 10 mM dNTPs (Promega) 0.5 μΐ, 上游和下游引物( 10 mM )各 0.5 μΐ, Taq酶(5 U/ μΐ, Promega ) 0.5 μΐ, MA模板 Ιμί, 灭菌去离子 水 19.5 μΙα 反应程序为 95 °C预变性 5min; 95 °C变性 30 s, 58°C退火 30 s, 72°C延伸 30 s, 35个循环; 72 °C延伸 7 min。 PCR产物取 10 μΐ^于 2%琼脂糖凝胶电泳, 100 V电压下 40 min, 通过凝胶成像分析仪观察, 结 果见图 7: M, DL2000 DNA, Marker; 1, 5%; 2, 1%; 3, 0.5%; 4, 0.1%; 5, 0.05%; 6, 0.01%; 7.0.005%; 8,阴性对照。 (5) Qualitative PCR method: PCR reaction primers are amplified by a foreign primer in the reaction of the present invention. The PCR reaction was 25 systems, 10 x PCRbuffer (Promega) 2.5 μΐ, 10 mM dNTPs (Promega) 0.5 μΐ, upstream and downstream primers (10 mM) each 0.5 μΐ, Taq enzyme (5 U/μΐ, Promega) 0.5 μΐ, MA template Ιμί, sterilized deionized water 19.5 μΙ α reaction procedure pre-denaturation at 95 °C for 5 min; denaturation at 95 °C for 30 s, annealing at 58 °C for 30 s, extension at 72 °C for 30 s, 35 cycles; extension at 72 °C Min. The PCR product was electrophoresed on a 2% agarose gel at 40 V for 40 min and observed by a gel imaging analyzer. The results are shown in Figure 7: M, DL2000 DNA, Marker; 1, 5%; 2, 1 %; 3, 0.5%; 4, 0.1%; 5, 0.05%; 6, 0.01%; 7.0.005%; 8, negative control.
由两种方法比较可以看出, 本发明的方法灵敏度明显高于 PCR方法的 敏感度, 能检测出转基因抗虫水稻含量更低的样品。  As can be seen from the comparison of the two methods, the sensitivity of the method of the present invention is significantly higher than that of the PCR method, and the sample having a lower transgenic rice resistance can be detected.

Claims

权 利 要 求 书 1 -检测转基因抗虫水稻的特异性引物, 其特征在于 , 包括外引物正向序列: 5, -AGGATTCACTGGTGGAGA-3' , 外引物反向序列: 5, -GATTATCCAAGGAGGTAGCT-3 ' ; 内引物正向序列: 5, -TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC-3' , 内引物反向序列: 5, - TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA- 3, 。2.—种采用权利要求 1 所述特异性引物检测转基因抗虫水稻的方 法, 其特征在于包括如下步骤: Claim 1 - Specific primer for detecting transgenic insect-resistant rice, comprising: an outer primer forward sequence: 5, -AGGATTCACTGGTGGAGA-3', external primer reverse sequence: 5, -GATTATCCAAGGAGGTAGCT-3 '; internal primer Forward sequence: 5, -TGGGAAGTGAATTGGAACTTCAATACCTCGTTAGACTCAACAGC-3', internal primer reverse sequence: 5, - TCTACCAGATATAGAGTTCGTGTGAGAAGATGGATGAATTACCCCAA-3. 2. A method for detecting transgenic insect-resistant rice using the specific primer of claim 1, which comprises the steps of:
( 1 )釆用权利要求 1所述的 4条特异引物及一种具有链置换活性 的 DNA聚合酶, 加入模板 DNA, 在 63- 65 °C进行 45- 60min, 并且在 80 (1) using the four specific primers of claim 1 and a DNA polymerase having strand displacement activity, adding template DNA, at 63-65 ° C for 45-60 min, and at 80
°C持续 2min, 4°C保存; °C for 2min, stored at 4°C;
其中的扩增反应体系: 扩增反应的总体积为 25μί, 其各种成分分 别为: lOxThermoPol Buffer 2.5 μ L, 4mol/L甜菜碱 6.25 μί,Ο.2mol/L MgS040.25 μΐ, 引物混合液 ΙμΙ^, 10 μ mol/L dNTPs 3.5 μ L, 8000U/L The amplification reaction system: The total volume of the amplification reaction is 25μί, and its various components are: lOxThermoPol Buffer 2.5 μ L, 4mol/L betaine 6.25 μί, Ο.2mol/L MgS040.25 μΐ, primer mixture ΙμΙ^, 10 μ mol/L dNTPs 3.5 μ L, 8000 U/L
Bst DNA聚合酶大片段 1-2 μ L, 模板舰 1 5 μ 用灭菌去离子水补齐 至 25 μΐ^ Bst DNA polymerase large fragment 1-2 μL, template ship 1 5 μ with sterile deionized water to 25 μΐ^
(2)扩增反应结束, 取体系液 3-25μί, 可采用不同方法判断扩增 与否, 包括: 直接向扩增管中加入荧光染料 SYBR Green, 通过颜色变化 观察有无扩增反应;或评估扩增副产物焦磷酸镁白色沉淀物的量来观察 有无扩增反应'; 或通过观察琼脂糖凝胶电泳条带判断扩增结果。  (2) At the end of the amplification reaction, the system solution is 3-25 μί, and the amplification can be judged by different methods, including: directly adding the fluorescent dye SYBR Green to the amplification tube, and observing the presence or absence of the amplification reaction by color change; The amount of the amplification by-product magnesium pyrophosphate white precipitate was evaluated to observe the presence or absence of the amplification reaction'; or the amplification result was judged by observing the agarose gel electrophoresis band.
3.如权利要求 2所述的检测方法,其中所述的引物混合液指的是将 合成的引物粉末分别配成浓度为 100 μ mol/L的母液,然后取外引物各 1 ML, 内引物各 8yL, 加灭菌去离子水 2μί, 充分混合, 制得引物混合 液。  The detection method according to claim 2, wherein the primer mixture refers to preparing the synthesized primer powder into a mother liquor having a concentration of 100 μmol/L, and then taking 1 ML of the external primer, the inner primer. 8 μL each, add 2 μί of sterile deionized water, and mix well to prepare a primer mixture.
4.如权利要求 1所述的检测方法, 其中荧光染料 SYBR Green浓度 为 1000倍, 加入量为 1- 2μί。  The detection method according to claim 1, wherein the fluorescent dye SYBR Green has a concentration of 1000 times and is added in an amount of from 1 to 2 μί.
5.如权利要求 2所述的检测方法,其中所述的链置换活性的 DNA聚 合酶为 8000U/L Bst DNA聚合酶大片段 1 - 2μ 。  The detection method according to claim 2, wherein the strand displacement active DNA polymerase is 8000 U/L Bst DNA polymerase large fragment 1 - 2μ.
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