WO2010016071A3 - Identification of genomic signature for differentiating highly similar sequence variants of an organism - Google Patents

Identification of genomic signature for differentiating highly similar sequence variants of an organism Download PDF

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Publication number
WO2010016071A3
WO2010016071A3 PCT/IN2009/000442 IN2009000442W WO2010016071A3 WO 2010016071 A3 WO2010016071 A3 WO 2010016071A3 IN 2009000442 W IN2009000442 W IN 2009000442W WO 2010016071 A3 WO2010016071 A3 WO 2010016071A3
Authority
WO
WIPO (PCT)
Prior art keywords
organism
differentiating
identification
sequence variants
highly similar
Prior art date
Application number
PCT/IN2009/000442
Other languages
French (fr)
Other versions
WO2010016071A2 (en
Inventor
Subodh Swati
Amit Tuteja
Swati Subodh
Narayanasamy Krishnamoorthy
Original Assignee
Swati Subodh
Amit Tuteja
Swati Subodh
Narayanasamy Krishnamoorthy
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Swati Subodh, Amit Tuteja, Swati Subodh, Narayanasamy Krishnamoorthy filed Critical Swati Subodh
Publication of WO2010016071A2 publication Critical patent/WO2010016071A2/en
Publication of WO2010016071A3 publication Critical patent/WO2010016071A3/en

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C12Q1/702—Specific hybridization probes for retroviruses
    • C12Q1/703—Viruses associated with AIDS
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C12Q1/706—Specific hybridization probes for hepatitis
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

Abstract

The present invention provides a process of identification of genomic signature for differentiating highly similar sequence variants of an organism. The present invention also provides unique genomic signature of an organism that can be used as a tool or an identifier of a species of an organism for differentiating highly similar sequence variants of the organism. The present invention further provides the nucleotide probe and/or primers useful for identification the genomic signature of an organism.
PCT/IN2009/000442 2008-08-05 2009-08-05 Identification of genomic signature for differentiating highly similar sequence variants of an organism WO2010016071A2 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
IN1857DE2008 2008-08-05
IN1857/DEL/2008 2008-08-05

Publications (2)

Publication Number Publication Date
WO2010016071A2 WO2010016071A2 (en) 2010-02-11
WO2010016071A3 true WO2010016071A3 (en) 2010-07-29

Family

ID=41466823

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IN2009/000442 WO2010016071A2 (en) 2008-08-05 2009-08-05 Identification of genomic signature for differentiating highly similar sequence variants of an organism

Country Status (1)

Country Link
WO (1) WO2010016071A2 (en)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EA037377B1 (en) 2011-02-11 2021-03-22 Дзе Трастиз Оф Дзе Юниверсити Оф Пенсильвания Vaccine for inducing an immune response against hbv
US9238679B2 (en) 2011-02-11 2016-01-19 The Trustees Of The University Of Pennslyvania Nucleic acid molecule encoding hepatitis B virus core protein and surface antigen protein and vaccine comprising the same
WO2014144578A1 (en) * 2013-03-15 2014-09-18 The Usa, As Represented By The Secretary, Department Of Health And Human Services Selective detection of hepatitis a, b, c, d, or e viruses or combinations thereof
CN113215290B (en) * 2020-02-05 2022-11-11 厦门大学 Method and kit for detecting serotype of shigella
CN111477276B (en) * 2020-04-02 2020-12-15 上海之江生物科技股份有限公司 Method and device for obtaining species-specific consensus sequence of microorganism and application of species-specific consensus sequence

Citations (3)

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WO1997040193A2 (en) * 1996-04-19 1997-10-30 Innogenetics N.V. Method for typing and detecting hbv
EP1193313A1 (en) * 1999-06-15 2002-04-03 Otsuka Pharmaceutical Co., Ltd. Method for determining hiv-1 subtype
US20060286566A1 (en) * 2005-02-03 2006-12-21 Helicos Biosciences Corporation Detecting apparent mutations in nucleic acid sequences

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1997040193A2 (en) * 1996-04-19 1997-10-30 Innogenetics N.V. Method for typing and detecting hbv
EP1193313A1 (en) * 1999-06-15 2002-04-03 Otsuka Pharmaceutical Co., Ltd. Method for determining hiv-1 subtype
US20060286566A1 (en) * 2005-02-03 2006-12-21 Helicos Biosciences Corporation Detecting apparent mutations in nucleic acid sequences

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WEI M ET AL: "Simple subtyping assay for human immunodeficiency virus type 1 subtypes B, C, CRF01-AE, CRF07-BC, and CRF08-BC", JOURNAL OF CLINICAL MICROBIOLOGY, AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON, DC, US LNKD- DOI:10.1128/JCM.42.9.4261-4267.2004, vol. 42, no. 9, 1 September 2004 (2004-09-01), pages 4261 - 4267, XP002998793, ISSN: 0095-1137 *
YEH S-H ET AL: "Quantification and genotyping of hepatitis B virus in a single reaction by real-time PCR and melting curve analysis", JOURNAL OF HEPATOLOGY, MUNKSGAARD INTERNATIONAL PUBLISHERS, COPENHAGEN, DK, vol. 41, no. 4, 1 October 2004 (2004-10-01), pages 659 - 666, XP004586587, ISSN: 0168-8278 *

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