WO2009145402A1 - Bio information analysis process auto design system and thereof. - Google Patents

Bio information analysis process auto design system and thereof. Download PDF

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Publication number
WO2009145402A1
WO2009145402A1 PCT/KR2008/006880 KR2008006880W WO2009145402A1 WO 2009145402 A1 WO2009145402 A1 WO 2009145402A1 KR 2008006880 W KR2008006880 W KR 2008006880W WO 2009145402 A1 WO2009145402 A1 WO 2009145402A1
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Prior art keywords
input
function
output values
pipeline
functions
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PCT/KR2008/006880
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French (fr)
Inventor
Sung-Hoon Lee
Tae-Hyung Kim
Jong-Hwa Park
Je-Keun Kwon
Su-An Cho
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Korea Research Institute Of Bioscience And Biotechnology
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Publication of WO2009145402A1 publication Critical patent/WO2009145402A1/en

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    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F30/00Computer-aided design [CAD]
    • G06F30/30Circuit design
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Computer Hardware Design (AREA)
  • General Engineering & Computer Science (AREA)
  • Evolutionary Computation (AREA)
  • Geometry (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Mathematical Physics (AREA)
  • Software Systems (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)

Abstract

Disclosed is a system for automatically designing and embodying an information analysis process and a method thereof in that a plurality of functions and characteristics of the input and output values of each function are stored and accumulated in a characteristic storage means of the function input and output values as one unit and a pipeline for analyzing and treating various information can be automatically generated, whereby the user can easily confirm it.

Description

[DESCRIPTION]
[Invention Title] BIO INFORMATION ANALYSIS PROCESS AUTO DESIGN SYSTEM AND THEREOF.
[Technical Field]
The present invention relates to a system for automatically designing and embodying an information analysis process and a method thereof, and more particularly to a system for automatically designing and embodying an information analysis process and a method thereof in that a plurality of functions and characteristics of the input and output values of each function are stored and accumulated in a characteristic storage means of the function input and output values as one unit and a pipeline for analyzing and treating various information can automatically generated, whereby the user can easily confirm it.
[Background Art]
Conventionally, since data analysis processes of various information should be established in advance, there is a problem in that this establishment of each data analysis process is often time consuming. Also, because the general users, who do not understand the data analysis method, cannot obtain the desiring results, all users cannot obtain the output data, thereby remarkably deteriorating the efficiency of the analysis.
Also, in order to predict new information by using any program on the information database, the development of the related system is very urgent . [Disclosure]
[Technical Problem]
Accordingly, the present invention has been made to solve the above-mentioned problems occurring in the prior art, and an object of the present invention is to provide a system for automatically designing and embodying an information analysis process and a method thereof in that a plurality of functions and characteristics of the input and output values of each function are stored and accumulated in a characteristic storage means of the function input and output values as one unit and a pipeline for analyzing and treating various information can automatically generated, whereby the user can easily confirm it.
[Technical Solution]
To accomplish the objects, the present invention provides a system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user. [Advantageous Effects]
In the system for automatically designing and embodying the information analysis process and the method thereof, there is an effect in that a plurality of functions and characteristics of the input and output values of each function are stored and accumulated in a characteristic storage means of the function input and output values as one unit and a pipeline for analyzing and treating various information can automatically generated, whereby the user can easily confirm it.
[Description of Drawings]
The above as well as the other objects, features and advantages of the present invention will be more apparent from the following detailed description taken in conjunction with the accompanying drawings, in which:
FIG. 1 is a schematic block diagram illustrating a system for automatically designing and embodying an information analysis process according to the present invention!
FIG. 2 is a schematic block diagram illustrating a process of a characteristic storage means of the function input and output values of a system for automatically designing and embodying an information analysis process according to the present invention; FIG. 3 is an example view illustrating a record shape stored in a function input and output database through a treatment of a characteristic storage means of the function input and output values of a system for automatically designing and embodying an information analysis process according to the present invention", FIG. 4 is an example view illustrating function records stored in a characteristic storage means of the function input and output values; FIG. 5 is an example view illustrating a relationship between functions for treating input and output values of a system for automatically designing and embodying an information analysis process according to the present invention;
FIG. 6 is an example view illustrating a pipeline presented by a pipeline forming means from function records stored in a function input and output database;
FIG. 7 is an example view illustrating a weight of a weight display means of a system for automatically designing and embodying an information analysis process according to the present invention; and FIG. 8 is an example view illustrating a similar relation representation means of a system for automatically designing and embodying an information analysis process according to the present invention.
[Best Mode]
To accomplish the objects, the present invention provides a system for automatically designing and embodying an information analysis process comprising", a characteristic storage means of function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user. To accomplish the objects, another embodiment of the present invention provides a system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user; and a function weight giving means for giving weights between proceeding functions and the input value or the output value where the plurality of the proceeding functions is existed in the pipelines having the functions and the input and output values. Here, the system for automatically designing and embodying an information analysis process further comprises a similar relation representation means for representing a similar relation between input and output values to the user in case that the input value can be easily changed into the output value.
Preferably, a similar relation line between input and output values is displayed in a screen of the user' s computer monitor through the similar relation representation means.
To accomplish the objects, further another embodiment of the present invention provides a system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of proceeding and following functions for storing a characteristic of a proceeding function and a characteristic of a following function on any one input and output values as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the following function of one input and output values to the characteristic of the proceeding function of another input and output values identical with that of the following function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the proceeding and following functions; and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
To accomplish the objects, the present invention provides a method for automatically designing and embodying an information analysis process comprising steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means of the function input and output values; forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; and representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
To accomplish the objects, another embodiment of the present invention provides a method for automatically designing and embodying an information analysis process comprising steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means of the function input and output values; forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; representing the pipeline formed by the pipeline forming means so as to confirm it through an user; and giving any weights between the proceeding functions and the input value or the output value, in case that a plurality of proceeding functions is existed in the pipelines having the functions and the input and output values.
Here, the method further comprises steps of representing a similar relation between input and output values to the user in case that the input value can be easily changed into the output value. Preferably, a similar relation line between input and output values is displayed in a screen of the user' s computer monitor in the similar relation representation step.
A preferred embodiment of the invention will be described in detail below with reference to the accompanying drawings. FIG. 1 is a schematic block diagram illustrating a system for automatically designing and embodying an information analysis process according to the present invention.
As shown in FIG. 1, the system for automatically designing and embodying the information analysis process according to the present invention includes a characteristic storage means 100 of the function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit, a pipeline forming means
200 for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means 100 of the function input and output values, and a pipeline representation means 300 for representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
FIG. 2 is a schematic block diagram illustrating a process of a characteristic storage means of the function input and output values of a system for automatically designing and embodying an information analysis process according to the present invention.
Here, the word "function" as a verified module serves to perform a specific function and can be written through a computer program.
Also, the function is a minimum unit of the pipeline. That is, the pipeline consists of at least one function.
The pipeline is designated as an executing program. Also, the pipeline consisting of at least two functions performs the desiring operation of the user.
Moreover, the input value information means one input data inputted into the function and the output value information means one output data outputted through the function.
For example, as shown in FIG. 2, the reference numerals 10 and 40 mean the input value information, the reference numerals 20 and 50 mean the functions, and the reference numerals 30 and 60 mean the output value information.
More concretely, if the function name 20 is a "GetFASTA" and the related function serves to receive a gene ID of a mouse and extract the corresponding gene sequence from a Refsequ database (a kind of a Bio information database), the input value information 10 of the
"GetFASTA" 20 is the gene ID of the mouse and the output value information 30 thereof is the gene sequence corresponding to the input value information 10. As another example of the function, if the function name is a
"RunBlastToRefseq" 50 and the related function serves to receive a gene ID of a mouse and output any gene sequence of a mankind similar to that of the mouse from the Refsequ database (a kind of a Bio information database), the input value information 40 of the
"RunBlastToRefseq" 50 is the gene ID of the mouse and the output value information 60 thereof is the gene sequence of the mankind corresponding to the input value information 40. As described above, the plurality of input and output values and the characteristics of the input and output values corresponding to the specific function can be defined and stored through the characteristic storage means of the function input and output values. By way of easy explanation, if there is any function for finding a name of a friend, the characteristic of the input value information 10 of the corresponding function 20 is "name" and "one person" and the characteristic of the output value information 30 thereof is
"name" and "many persons" . Also, if there is another function for finding a address of a person, the characteristic of the input value information 40 of the corresponding function 50 is "name" and "many persons" and the characteristic of the output value information 60 thereof is "address" and "many things" .
Here, since the characteristic of the output value information 30 of one function 20 is the same as that of the input value information 40 of other function 50, the pipeline for connecting the functions 20 and 50 to each other is formed. So to speak again, after definition of the input and output values, the characteristic storage means of the function input and output values serves to store and accumulate the plurality of functions, the plurality of input and output values, and the characteristics of the input and output values of each function.
Accordingly, the user can check out the pipeline formed by the pipeline forming means 200 through the monitor of the computer thereof by means of the pipeline representation means 200. FIG. 3 is an example view illustrating a record shape stored in a function input and output database through a treatment of a characteristic storage means of the function input and output values of a system for automatically designing and embodying an information analysis process according to the present invention. As shown in FIG. 3, it can know the record shape of the function, the input and output values, and the characteristics of the input and output values. Each of the input and output values and the characteristics of the input and output values may be at least one. FIG. 4 is an example view illustrating function records stored in a characteristic storage means of the function input and output values. As shown in FIG. 4, it can understand the shape of the function records stored through the treatment of the characteristic storage means of the function input and output values.
The pipeline forming means 200 serves to form the pipeline according to the input and output values in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means 100 of the function input and output values. As described above, since the output value information 30 of the "GetFASTA" 20 is the gene ID of the mouse and the input value information 40 of the "RunBlastToRefseq" 50 is the gene ID of the mouse, the output value information 30 of the "GetFASTA" 20 can become the input value information 40 of the "RunBlastToRefseq" 50. That is, the following function of the "GetFASTA" 20 is the "RunBlastToRefseq" 50 and the "GetFASTA" 20 and the "RunBlastToRefseq" constructs one pipeline by means of the pipeline forming 200.
FIG. 5 is an example view illustrating a relationship between functions for treating input and output values of a system for automatically designing and embodying an information analysis process according to the present invention.
As shown in FIG. 5, the concepts of FIG. 5 can be implemented by "B" of FIG. 4.
Here, it can be defined as the pipeline forming means 200. FIG. 6 is an example view illustrating a pipeline presented by a pipeline forming means from function records stored in a function input and output database.
As shown in FIG. 6, the pipeline can be presented by the pipeline forming means 200 from the function records stored in the function input and output database.
FIG. 7 is an example view illustrating a weight of a weight display means of a system for automatically designing and embodying an information analysis process according to the present invention. As shown in Fig. 7, a record can be constructed based on the input and output values of the functions.
More concretely, the proceeding function 70 and the following functions 90 and 95 are existed based on the input and output values 80. Here, the input and output values 80 is the same as the output value of a function 1 (70) and the input values of functions 3 and 4(90 and 95). In the meantime, where a plurality of proceeding functions is existed in the pipelines having the functions and the input and output values, any weights between the proceeding functions and the input and output values are given through a function weight giving means. That is, where the proceeding functions 70 and 75 are existed before the input and output values 85, a "weight 30" between the proceeding functions 1 (70) and the input and output values 85 (the output value of the functions 1 and 4; the input values of function 4) and another
"weight 500" between the proceeding functions 2 (75) and the input and output values 85 are given.
As shown in a third drawing of FIG. 7, if the input value information of the functions 1 and 2 is "A" , the weight is given through the function weight giving means and then, a function of high frequency can be presented, so that the user can refer to it as to which of the functions 1 and 2 is selected.
Accordingly, the user can select the function of high frequency or the function of low frequency with reference to the weight. Here, the "weight" can mean the frequency number or can be defined at his discretion.
The function records of FIG. 4 can be illustrated as the pipeline of a network shape shown in FIG. 6.
FIG. 8 is an example view illustrating a similar relation representation means of a system for automatically designing and embodying an information analysis process according to the present invention.
As shown in FIG. 8, the similar relation representation means serves to represent a similar relation between input and output values in case that the input value can be easily changed into the output value. That is, where an "input value B" is easily changed into an "output value E" through a format between them, it can be seen that the
"input value B" is involved in the "output value E" although the function 3 is not existed.
In this case, in the system for automatically designing and embodying the information analysis process according to the present invention, the similar relation between input and output values can be presented to the users through a dotted line.
Here, the similar relation between input and output values is presented through the dotted line in FIG. 8. However, for example, the presenting means may be a general pipeline and color lines or any lines having different thickness etc. The present invention is not limited to any shape thereof.
For example, if the "input value B" is "10011985" (European style birthday) and the "output value E" is "19850110" (Korean style birthday), the "input value B" is different from the "output value E" in terms of only format thereof. Accordingly, the similar relation line between input and output values is displayed in the screen of the user' s computer monitor through the dotted line although the simple function for changing the format is not existed. In the meantime, a system for automatically designing and embodying the information analysis process according another embodiment of the present invention includes a characteristic storage means of proceeding and following functions for storing a characteristic of a proceeding function and a characteristic of a following function on any one input and output values as one unit, a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the following function of one input and output values to the characteristic of the proceeding function of another input and output values identical with that of the following function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the proceeding and following functions, and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through the user.
That is, the characteristic of the proceeding function and the characteristic of the following function on any one input and output values are stored as one unit through the characteristic storage means of the proceeding and following functions and then, the characteristic of the following function of one input and output values and the characteristic of the proceeding function of another input and output values identical with that of the following function are repeatedly connected to each other through the pipeline forming means with reference to the characteristic storage means of the proceeding and following functions to form the pipeline.
A method for automatically designing and embodying the information analysis process according to another embodiment of the present invention includes steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means 100 of the function input and output values, forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means 100 of the function input and output values, and representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
That is, characteristic storage means 100 of the function input and output values serves to define the input and output values and the characteristics of the input and output values and store the data related to the plurality of functions, the plurality of input and output values, and the characteristics of the input and output values of each function to be accumulated. Also, where the plurality of functions, the plurality of input and output values, and the characteristics of the input and output values of each function are accumulated, the pipeline is illustrated through the pipeline forming means according to the input and output values.
Moreover, if the pipeline is formed, the users can confirm it though the pipeline representation means.
A method for automatically designing and embodying the information analysis process according to another embodiment of the present invention includes steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means 100 of the function input and output values, forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that the data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means 100 of the function input and output values, representing the pipeline formed by the pipeline forming means so as to confirm it through an user, and giving any weights between the proceeding functions and the input value or the output value, in case that a plurality of proceeding functions is existed in the pipelines having the functions and the input and output values. That is, in the function weight giving step, where the plurality of proceeding functions is existed in the pipelines having the functions and the input and output values, the weights between the proceeding functions and the input value or the output value are given through the function weight giving means, thereby providing them to the users. Also, the method for automatically designing and embodying the information analysis process according to further another embodiment of the present invention further includes steps of representing a similar relation between input and output values in case that the input value can be easily changed into the output value. That is, the similar relation representation means- serves to represent a similar relation between input and output values in case that the input value can be easily changed into the output value. In the present invention, the data of the information field obtained through the characteristic storage means of the function input and output values can be stored in the database and the result using the same can be provided to the users. Also, the system for automatically designing and embodying the information analysis process according to the present invention can be applied to another field except the bio information field. The present invention is not limited to any field thereof .
While this invention has been described in connection with what are presently considered to be the most practical and preferred embodiments, it is to be understood that the invention is not limited to the disclosed embodiments and the drawings, but, on the contrary, it is intended to cover various modifications and variations within the spirit and scope of the appended claims.
[Industrial Applicability]
The present invention relates to a system for automatically designing and embodying an information analysis process and a method thereof in that a plurality of functions and characteristics of the input and output values of each function are stored and accumulated in a characteristic storage means of the function input and output values as one unit and a pipeline for analyzing and treating various information can automatically generated, whereby the user can easily confirm it.

Claims

[CLAIMS]
[Claim 1]
A system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that a data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
[Claim 2]
A system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of function input and output values for defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit; pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that a data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user; and a function weight giving means for giving weights between proceeding functions and the input value or the output value where the plurality of the proceeding functions is existed in the pipelines having the functions and the input and output values.
[Claim 3]
A system for automatically designing and embodying an information analysis process as set forth in claims 1 or 2, further comprising a similar relation representation means for representing a similar relation between input and output values to the user in case that the input value can be easily changed into the output value.
[Claim 4]
A system for automatically designing and embodying an information analysis process as set forth in claim 3, wherein a similar relation line between input and output values is displayed in a screen of the user' s computer monitor through the similar relation representation means .
[Claim 5]
A system for automatically designing and embodying an information analysis process comprising: a characteristic storage means of proceeding and following functions for storing a characteristic of a proceeding function and a characteristic of a following function on any one input and output values as one unit; a pipeline forming means for forming a pipeline by repeatedly connecting the characteristic of the following function of one input and output values to the characteristic of the proceeding function of another input and output values identical with that of the following function in case that a data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the proceeding and following functions; and a pipeline representation means for representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
[Claim 6]
A method for automatically designing and embodying an information analysis process comprising steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means of the function input and output values; forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that a data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; and representing the pipeline formed by the pipeline forming means so as to confirm it through an user.
[Claim 7]
A method for automatically designing and embodying an information analysis process comprising steps of: defining input and output values and storing a plurality of functions and characteristics of the input and output values of each function as one unit in a characteristic storage means of the function input and output values; forming a pipeline by repeatedly connecting the characteristic of the input value of one function to the characteristic of the output value of another function identical with that of the input value of one function in case that a data having the plurality of functions and the characteristics of the input and output values of each function is accumulated through the characteristic storage means of the function input and output values; representing the pipeline formed by the pipeline forming means so as to confirm it through an user; and giving any weights between the proceeding functions and the input value or the output value, in case that a plurality of proceeding functions is existed in the pipelines having the functions and the input and output values.
[Claim 8]
A method as claimed in claims 6 or 7, further comprising steps of representing a similar relation between input and output values to the user in case that the input value can be easily changed into the output value.
[Claim 9]
A method as claimed in claim 8, wherein a similar relation line between input and output values is displayed in a screen of the user' s computer monitor in the similar relation representation step.
PCT/KR2008/006880 2008-05-28 2008-11-21 Bio information analysis process auto design system and thereof. WO2009145402A1 (en)

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KR101282798B1 (en) * 2011-09-08 2013-07-04 한국과학기술정보연구원 System and method for processing bio information analysis pipeline

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