WO2008067169A3 - Method and apparatus for modifying output dna analysis results using an expert system - Google Patents

Method and apparatus for modifying output dna analysis results using an expert system Download PDF

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Publication number
WO2008067169A3
WO2008067169A3 PCT/US2007/084656 US2007084656W WO2008067169A3 WO 2008067169 A3 WO2008067169 A3 WO 2008067169A3 US 2007084656 W US2007084656 W US 2007084656W WO 2008067169 A3 WO2008067169 A3 WO 2008067169A3
Authority
WO
WIPO (PCT)
Prior art keywords
analysis results
rule
modified
profile analysis
dna profile
Prior art date
Application number
PCT/US2007/084656
Other languages
French (fr)
Other versions
WO2008067169A9 (en
WO2008067169A2 (en
Inventor
John Douglas Birdwell
Tse-Wei Wang
Dale V Stansberry
Jared Pendleton
Original Assignee
Univ Tennessee Res Foundation
John Douglas Birdwell
Tse-Wei Wang
Dale V Stansberry
Jared Pendleton
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US11/560,580 external-priority patent/US7624087B2/en
Priority claimed from US11/560,566 external-priority patent/US7640223B2/en
Priority claimed from US11/560,601 external-priority patent/US7664719B2/en
Application filed by Univ Tennessee Res Foundation, John Douglas Birdwell, Tse-Wei Wang, Dale V Stansberry, Jared Pendleton filed Critical Univ Tennessee Res Foundation
Priority to GB0910042A priority Critical patent/GB2457200A/en
Publication of WO2008067169A2 publication Critical patent/WO2008067169A2/en
Publication of WO2008067169A3 publication Critical patent/WO2008067169A3/en
Publication of WO2008067169A9 publication Critical patent/WO2008067169A9/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Genetics & Genomics (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Displays of a plurality of data comprising DNA profile analysis results wherein a given DNA profile analysis result is based on a decision made by an expert system according to a modifiable rule base comprising peak expert rules. At least one peak expert rule comprises a parameter having a modifiable value and the same or another peak expert rule being selectably enabled. Allele data requiring inspection are highlighted. Input is accepted from a source, wherein the input may cause the DNA profile analysis results to be modified, expanded, accepted, viewed in alternative displays or rejected. The DNA profile analysis results may be modified by re-applying the rule base or applying a modified rule base including a rule having a modified parameter value or a rule being deselected. In response to the input, an updated table is created for output or display, wherein the updated table comprises the modified DNA profile analysis results.
PCT/US2007/084656 2006-11-16 2007-11-14 Method and apparatus for modifying output dna analysis results using an expert system WO2008067169A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
GB0910042A GB2457200A (en) 2006-11-16 2007-11-14 Method and apparatus for modifying output DNA analysis results using an expert system

Applications Claiming Priority (8)

Application Number Priority Date Filing Date Title
US56057606A 2006-11-16 2006-11-16
US11/560,580 2006-11-16
US11/560,566 2006-11-16
US11/560,580 US7624087B2 (en) 2006-11-16 2006-11-16 Method of expert system analysis of DNA electrophoresis data
US11/560,566 US7640223B2 (en) 2006-11-16 2006-11-16 Method of organizing and presenting data in a table using stutter peak rule
US11/560,601 2006-11-16
US11/560,601 US7664719B2 (en) 2006-11-16 2006-11-16 Interaction method with an expert system that utilizes stutter peak rule
US11/560,576 2006-11-16

Publications (3)

Publication Number Publication Date
WO2008067169A2 WO2008067169A2 (en) 2008-06-05
WO2008067169A3 true WO2008067169A3 (en) 2008-11-13
WO2008067169A9 WO2008067169A9 (en) 2009-05-14

Family

ID=39471751

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2007/084656 WO2008067169A2 (en) 2006-11-16 2007-11-14 Method and apparatus for modifying output dna analysis results using an expert system

Country Status (2)

Country Link
GB (1) GB2457200A (en)
WO (1) WO2008067169A2 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3341927A4 (en) * 2015-09-30 2019-05-08 IntegenX Inc. Command center
CN106021433B (en) * 2016-05-16 2019-05-10 北京百分点信息科技有限公司 A kind of the public praise analysis method and device of comment on commodity data
JP7434143B2 (en) * 2017-07-12 2024-02-20 アンディ・コーポレイション pattern recognition system

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020116135A1 (en) * 2000-07-21 2002-08-22 Pasika Hugh J. Methods, systems, and articles of manufacture for evaluating biological data
US6807490B1 (en) * 2000-02-15 2004-10-19 Mark W. Perlin Method for DNA mixture analysis

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6807490B1 (en) * 2000-02-15 2004-10-19 Mark W. Perlin Method for DNA mixture analysis
US20020116135A1 (en) * 2000-07-21 2002-08-22 Pasika Hugh J. Methods, systems, and articles of manufacture for evaluating biological data

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
PALSSON B ET AL: "Using Quality Measures to Facilitate Allele Calling in High-Throughput Genotyping", GENOME RESEARCH, COLD SPRING HARBOR LABORATORY PRESS, WOODBURY, NY, US, vol. 9, 1 October 1999 (1999-10-01), pages 1002 - 1012, XP002228698, ISSN: 1088-9051 *
PERLIN M W: "An Expert System for Scoring DNA Database Profiles", GENETIC IDENTITY CONFERENCE PROCEEDINGS. INTERNATIONAL SYMPOSIUMON HUMAN IDENTIFICATION, XX, XX, 7 October 2000 (2000-10-07), pages 1 - 30, XP002228697 *

Also Published As

Publication number Publication date
WO2008067169A9 (en) 2009-05-14
GB0910042D0 (en) 2009-07-22
WO2008067169A2 (en) 2008-06-05
GB2457200A (en) 2009-08-12

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