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  • C12N2501/105—Insulin-like growth factors [IGF]

Definitions

• the present invention is directed to proteins in which a polypeptide that promotes the growth and/or survival of cells is fused to a peptide that binds to heparin. These proteins may be bound to cardiomyocytes and administered to damaged cardiac tissue to help promote repair.
• IGF-I Insulin like growth factor- 1
• Mice deficient in IGF-I exhibit increased apoptosis following myocardial infarction (Palmen, et al., Cardiovasc. Res. 50:516-524 (2001)), whereas cardiac-specific IGF-I overexpression protects against myocyte apoptosis and ventricular dilation following infarction (Li, et al, J. Clin. Invest. 700:1991-1999 (1997); Torella, et al, Circ. Res. 94:514-524 (2004)). IGF-I overexpression also increases cardiac stem cell number and growth, leading to an increase in myocyte turnover and function in the aging heart.
• IGF-I promotes engraftment, differentiation, and functional improvement of embryonic stem cells transplanted into myocardium (Kofidis, et al, Stem Cells 22:1239-1245 (2004)).
• serum levels of IGF-I correlate inversely with the risk of congenital heart failure in a subset of elderly patients (Vasan, et al, Ann. Intern. Med. /59:642-648 (2003)).
• IGF-I an attractive therapeutic agent for patients that have experienced damage to cardiac tissue, e.g., patients that have undergone a myocardial infarction.
• IGF-I is a small protein that diffuses readily through tissues. As a result, it is difficult to keep a high concentration of this factor at a site of tissue damage for a prolonged period of time.
• One approach that has been taken to maintain a high local concentration is to attach IGF-I to a self-assembling biological membrane (see US20060088510).
• the present invention is based upon the development of a procedure for binding IGF-I to cardiomyocytes prior to their implantation into damaged cardiac tissue. It has been found that it is possible to join IGF-I to a heparin binding peptide (HBP) and obtain a fusion protein that maintains a beneficial effect on the survival of cultured cells.
• HBP heparin binding peptide
• the fusion protein binds to cardiomyocytes (presumably to cell surface heparin) better than IGF-I alone. Since many different cell types have cell surface heparin, it is not expected that simply injecting the IGF-I /HBP protein systemically would be of much benefit to cardiac patients. However, targeting may be achieved by incubating cardiomyocytes with IGF- 1/HBP prior to implantation. To a lesser extent, localization may also be achieved by injecting the protein directly into cardiac tissue. Similar approaches should be useful in treating other conditions (e.g., wounds) that respond to growth factors (with or without the transplantation of cells).
• the invention is directed to a compound having the formula: B- (J) n -(Z) q , or (Z) q -( J) n -B, where n is an integer from 0-10; q is an integer from 1-5; B is a peptide that promotes the growth and/or survival of cardiomyocytes (as determined, e.g., using cells deprived of serum) and Z is a heparin binding peptide. Any of the heparin binding peptides known in the art may be used including all of the peptides described herein.
• J is either a proteinogenic amino acid or compounds such as biotin/avidin that can be used to join peptides together.
• all peptide sequences are written from the N terminus (far left) to the C terminus (far right) and unless otherwise indicated, all peptides are made up of "proteinogenic" amino acids, i.e., they are the L-isomers of: alanine (A); arginine (R); asparagine (N); aspartic acid (D); cysteine (C); glutamic acid (E); glutamine (Q); glycine (G); histidine (H); isoleucine (I); leucine (L); lysine (K); methionine (M); phenylalanine (F); proline (P); serine (S); threonine (T); tryptophan (W); tyrosine (Y); or valine (V).
• the compound of the formulas shown above is a fusion protein in which L is a proteinogenic amino acid and A is either insulin derived growth factor- 1 (IGF-I) or platelet derived growth factor (PDGF).
• IGF-I insulin derived growth factor- 1
• PDGF platelet derived growth factor
• the full length sequence for human IGF-I (GenBank Accession No. NM 00618) is as follows: MGKISSLPTOLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETL CGAELVD ALOF VCGDRGF YFNKPTG YGS S SRRAPQTGIVDECCFRSCDLRRL EMYCAPLKPAKSARSVRAORHTDMPKTOKEVHLKNASRGSAGNKNYRM (SEQ ID NO:1).
• IGF-I is defined as having the core sequence: PETLCGAELVDALQFVCGPRGFYFNKPTGYGSSIRRAPQTGIVD ECCFRSCDLRRLEMYCAPLKPTKSA (SEQ ID NO:2) and may optionally include any additional portion of the sequence of SEQ ID NO:1.
• the C terminus may begin with G, AG, TAG etc.
• the N terminus of SEQ ID NO:2 may be extended in accordance with SEQ ID NO:1.
• the peptide may terminate in R, RS, RSV etc.
• n is preferably 0 and q is preferably 1.
• Preferred heparin binding peptides i.e. Z in the formulas, are:
• PYVVLPRPVCFEKGMNYTVR (SEQ ID NO:5);
• KQNCLSSRASFRGCVRNLRLSR SEQ ID NO:6
• KDGRKICLDLQAPLYKKIIKKLLES SEQ ID NO:7;
• AKLNCRLYRKANKSSKLVSANRLFGDK SEQ ID NO: 10
• LRKLRKRLLRDADDLQKRLAVYQ SEQ ID NO: 11
• PLQERAQAAWQERLRARMEEMGSRTRDRLDEVKEQVAERAKL (SEQ ID NO: 12); KGKMHKTCYY (SEQ ID NO: 13); MGKMHKTCYN (SEQ ID NO: 14); PPTIIWKHKGRDVILKKDVRFIVLSNNY (SEQ ID NO: 15); KKHEAKNWFVGLKKNGSCKRGP (SEQ ID NO: 16); KGGRGTPGKPGPRGQRGPTGRGERGPRGITGK (SEQ ID NO: 17); GEFYDLRLKGDK (SEQ ID NO: 18); HRHHPREMKKRVEDL (SEQ ID NO: 19); EKTLRKWLKMFKKR (SEQ ID NO:20); and AEAAARAAARRAARRAAAR (SEQ ID N0:21).
• the invention also includes DNA molecules encoding any of the fusion proteins described above, vectors containing these DNA molecules and host cells transformed with the vectors.
• the host cells may be used to produce the fusion proteins for use in the therapeutic methods described herein.
• the DNA may also be used to transform cells that secrete the fusion protein at the site of tissue damage. Once secreted, the proteins should bind to other cells in the vicinity, thereby maintaining a relatively high localized concentration.
• the invention also includes methods of treating patients for any condition responsive to IGF-I or PDGF using one or more of the fusion proteins or compounds.
• the compounds or fusion proteins are administered directly to the treatment site to allow them to bind to the surfaces of endogenous cells. More preferably, they are used in treating conditions where tissue growth or repair is needed and there are cells available that can be used to aid this process. In these cases, the compounds or fusion proteins will be preincubated with the cells to allow them to bind prior to implantation.
• a patient is treated for damaged cardiac tissue (e.g., due to a myocardial infarction) by incubating cardiomyocytes with the compounds or fusion proteins for a period of time and under conditions sufficient to permit them to bind. The cells are then injected or implanted into the cardiac tissue of the patient.
• the compounds and fusion proteins may also be used to repair damaged cartilage.
• IGF-I diffuses out of cartilage and its effect on transplanted chondrocytes is therefore reduced or lost.
• the local concentration of the growth factor will be increased and, as a result, the chondrocytes will make more cartilage.
• IGF-I growth factors engineered to bind heparin, particularly IGF-I, may also be bound to cells being implanted to repair and regenerate neurons, e.g., in patients with neurodegenerative diseases such as ALS, who have had a stroke, or who have lost nerve function as the result of an injury.
• IGF-I is a candidate for clinical trials in ALS and has been found to promote axon outgrowth in corticospinal motor neurons (Ozdinler, et ah, Nature Neurosci. 9:1371-1381 (2006)). By binding the IGF-I to the neurons before implantation, their growth in vivo will be enhanced.
• the present invention is based upon the concept that that the recovery of tissue after injury is promoted by maintaining high local concentrations of growth factors such as IGF-I or PDGF.
• growth factors such as IGF-I or PDGF.
• One way of joining the heparin binding peptide to the therapeutic agent is through the use of a nonpeptide linker.
• a nonpeptide linker For example, the use of biotin and avidin for linking molecules is well known in the art and standard methodology can be used for attaching heparin binding peptides to growth factors such as IGF-I.
• a spacer may be included between the two.
• the spacer can take the form of 1-15 (preferably 1-10) fatty acids or 1-15 (preferably 1-10) amino acids. Methodology for incorporating spacers of this type is well known in the art.
• heparin binding peptides and growth factors such as IGF-I and PDGF are joined together in the form of a fusion protein.
• Fusion proteins may either be chemically synthesized or made using recombinant DNA techniques. Chemical methods include solid- phase peptide synthesis using standard N-tert-butyoxycarbonyl (t-Boc) chemistry and cycles using n-methylpyrolidone chemistry. Once peptides have been synthesized, they can be purified using procedures such as high pressure liquid chromatography on reverse-phase columns. Purity may also be assessed by HPLC and the presence of a correct composition can be determined by amino acid analysis.
• Cardiomyocytes or other cells may be obtained using standard procedures and may then be incubated with fusion compositions or proteins for a period sufficient to allow the fusion proteins to bind to cell surfaces.
• the incubation may last anywhere from about an hour to several days and should be carried out under conditions that allow for cell survival, e.g. at about 37° C, neutral pH, and in a culture medium that insures cell survival.
• the amount of protein present should generally be enough to coat the cells but the exact amount is not critical.
• the cells may be administered by syringe or catheter to cardiac tissue. The exact amount of cells used is not critical but, in general, between I X lO 5 and I X lO 7 will be used.
• Fusion proteins may be incorporated into a pharmaceutical composition containing a carrier such as saline, water, Ringer's solution and other agents or excipients and cells may be maintained in standard media to maintain viability.
• a carrier such as saline, water, Ringer's solution and other agents or excipients and cells
• Preparations will generally be designed for implantation, infusion or injection, particularly into cardiac tissue but topical treatments will also be useful, e.g., in the treatment of wounds.
• AU pharmaceutical compositions may be prepared using methods that are standard in the art (see e.g., Remington's Pharmaceutical Sciences, 16th ed. A. Oslo, ed., Easton, PA (1980)).
• the optimal dosage will be determined by methods known in the art and will be influenced by factors such as the age of the patient, disease state and other clinically relevant factors.
• the present example demonstrates that IGF-I improves survival of ES-derived cardiomyocytes and describes the development of a novel heparin binding (HB)-IGF-I fusion protein engineered to improve survival of injected cells.
• HB heparin binding
• ES cells committed to the cardiomyocyte lineage.
• Mouse ES cells stably transfected with ⁇ -cardiac myosin heavy chain promoter-driven enhanced green fluorescent protein (EGFP), were differentiated into cardiomyocytes by the hanging drop method and EGFP positive cells were purified by fluorescent cell sorting.
• IGF-I reduced cell death induced by serum deprivation (13.6 +/- 1.9 % vs 25.9 +/- 2.5 % in control, p ⁇ 0.05) and decreased apoptosis induced by serum deprivation (TUNEL-positive cells 8.0 +/- 1.5 % to 4.3 +/- 0.5 % respectively, p ⁇ 0.05).
• IGF-I decreased Doxorubicin (l ⁇ M, 24hr) or chelerythrin (3 ⁇ M, lhr)-induced apoptosis (p ⁇ .01).
• the phosphoinositide-3 kinase inhibitor, LY294002 (lO ⁇ M) inhibited the protective effect of IGF-I on Doxorubicin-induced apoptosis (p ⁇ 0.05).
• IGF-I diffuses rapidly away from injected sites, we then designed and expressed a novel recombinant IGF-I fusion protein with an N- terminal HB domain. The protein was purified by Nickel-affinity chromatography and then subjected to oxidative refolding to restore biological activity.
• HB-IGF-I Heparin-binding IGF-I
• HB-IGF-I Heparin-binding IGF-I
• HB-IGF-I bound selectively to heparin as well as the cell surfaces of 3T3 fibroblasts, neonatal cardiac myocytes and differentiating embryonic stem cells.
• HB-IGF-I activated the IGF-I receptor and Akt with the identical kinetics and dose-dependence of IGF-I, indicating no compromise of biological activity due to the heparin-binding domain.
• HB-IGF- 1 was selectively retained by cartilage explants and led to sustained chondrocyte proteoglycan biosynthesis compared to IGF-I.
• Rat IGF-I cDNA was amplified by Polymerase chain reaction (PCR) using primers (5' to 3') GGACCAGAGGACCCTTTGCG (forward, SEQ ID NO:22) and AGCTGACTTT GTAGGCTTCAGC (reverse, SEQ ID NO:23).
• PCR Polymerase chain reaction
• the product was subcloned into the pTrcHis-TOPO vector (Invitrogen, Carlsbad, CA, USA) with the addition of a stop codon (TAG) at the C-te ⁇ ninus of IGF-I, thus encoding an Xpress-tagged IGF-I (Xpress-IGF-1).
• TAG stop codon
• Xpress-IGF-1 Xpress-tagged IGF-I
• heparin binding sequence (AA 93-113) of rat HB-EGF(AAAAAGAAGAGGAAAGGCAAGGGG TTAGGAAAGAAGAGAGATCCATGCCT TAAGAAATACAAG (SEQ ID NO:24) was inserted between the X-press tag and the IGF-I sequence through mutagenesis.
• Xpress-IGF-1 and HB-IGF-I were expressed in E. coli BL21 cells and grown in LB medium in 4 1 batches. Protein synthesis was induced with 1 mM isopropyl ⁇ -D- thiogalactoside for 4 hours and cells were then harvested by centrifugation, lysed in lysis buffer (6 M guanidine hydrochloride, 20 mM sodium phosphate, 500 mM NaCl, pH 7.8) and homogenized. The first purification step consisted of affinity purification by the polyhistidine tag in fusion proteins with Ni-NTA (Invitrogen).
• Ni-NTA resin was washed with wash buffer (8 M urea, 500 mM NaCl, 20 mM phosphate, pH 6.2), and bound protein was eluted at pH 4. Eluted proteins were then subjected to oxidative refolding to restore biological activity. The proteins were incubated overnight at 4 0 C with refolding buffer (50 mM Tris, 75 mM NaCl, 100 ⁇ M oxidized-glutathione and 100 ⁇ M reduced-glutathione, pH 7.8).
• DMEM Dulbecco's modified Eagle's medium
• Invitrogen Dulbecco's modified Eagle's medium
• 3T3 fibroblast cells were cultured in DMEM with 10% newborn calf serum (Invitrogen) and the medium was replaced with serum-free medium 24 hours before experiments.
• Mouse embryonic stem (ES) cells were grown on gelatin-coated dishes without feeder cells in Glasgow Minimum Essential Medium (Invitrogen) supplemented with 15% KNOCKOUT SR (Invitrogen) and leukemia inhibitory factor (Chemicon, Billerica, MA, USA).
• Bovine articular cartilage explants (3-mm-diameter, 1-mm-thick disks) were harvested from the femoropatellar grooves of 1-2-week-old calves and cultured in low- glucose DMEM with 10 mM HEPES, 0.1 mM nonessential amino acids, 0.4 mM L-proline, 20 ⁇ g/ml ascorbate, 100 U/ml penicillin and 100 ⁇ g/ml streptomycin at 37°C in a 5% CO 2 atmosphere.
• Neonatal cardiac myocytes and 3T3 fibroblasts were lysed using phosphate-buffered saline (PBS) with 1% Triton-X, 0.25% Na-deoxycholate, 1 mM ethylenediamine-tetraacetic acid (EDTA), 1 mM phenylmethylsulfonyl fluoride (PMSF), 1 mM NaF, 1 mM Na 3 VO 4 and 1:1000 protease inhibitor cocktail (Sigma, St. Louis, MD, USA).
• PBS phosphate-buffered saline
• Triton-X 1 mM ethylenediamine-tetraacetic acid
• PMSF phenylmethylsulfonyl fluoride
• 1 mM NaF 1 mM Na 3 VO 4
• protease inhibitor cocktail Sigma, St. Louis, MD, USA.
• Cartilage disks were pulverized and lysed with 100 mM NaCl, 50 mM Tris, 0.5% Triton-X, 5 mM EDTA, 1 mM PMSF and 1:1000 proteinase inhibitor cocktail (Sigma). Protein concentration was measured by Bradford assay and 10 ⁇ g protein was loaded in each well for Western blot analysis. Similar GAG content was observed in all samples as measured by DMMB dye binding.
• Anti-Xpress antibody Invitrogen
• Anti-polyclonal IGF-I antibody Abeam, Cambridge, MA, USA
• anti-phospho-IGF-1 receptor antibody Cell Signaling, Danvers, MA, USA
• anti-phospho-Akt antibody Cell Signaling
• Anti-Actin antibody Sigma
• 96- well plates were coated with an anti-Xpress antibody (lO ⁇ g/ml) overnight. Identical amounts of protein from cartilage extracts were added to each well. Polyclonal IGF-I antibody was used as the primary antibody, and anti-rabbit-horseradish peroxidase (Bio- Rad, Hercules, CA, USA) was used as the secondary antibody. After addition of ABTS Peroxidase Substrate (KPL, Gaithersburg, MD, USA), plates were read at 405 run.
• KPL ABTS Peroxidase Substrate
• Embryoid bodies (10 days after induction of differentiation) were incubated with fusion proteins for 2 hours, washed with PBS 3 times, and fixed with paraformaldehyde before immunohistochemistry with an anti-Xpress antibody.
• Cartilage disks were cultured in serum-free DMEM supplemented with either 500 nM HB-IGF-I or 500 nM Xpress-IGF-1. After 48 hours (on day 0), disks were washed 3 times with PBS then incubated in DMEM with no IGF-I. Disks were collected on days 0, 1, 2 and 4. Protein remaining in cartilage extracts was detected by Western blot analysis and ELISA.
• Chondrocyte proteoglycan synthesis was measured by incorporation of [ 35 S]sulfate (PerkinElmer, Waltham, MA, USA) as previously described ( Sah, et ah, J. Orthop. Res. 7:619-636 (1989)).
• Cartilage disks were equilibrated in serum-free medium for 1 day and incubated in medium containing 100 nM HB-IGF-I, Xpress-IGF-1 or control IGF-I (Sigma) for 2 days. The disks were then washed 3 times with PBS and changed to IGF-I free medium. Cultured disks were radiolabeled with 5 ⁇ Ci/ml [ 35 S]sulfate for the final 24 hours of culture.
• each disk was washed 3 times in 1.0 ml of PBS with 0.8 mM proline and 1 mM Na 2 SO 4 at 4 0 C to remove free radiolabel.
• Disks were digested in 1.0 ml of proteinase K (125 ⁇ g/ml in 0.1 M Na 2 SO 4 , 5 mM EDTA and 5 mM cysteine at pH 6.0).
• Samples were analyzed for DNA content by fluorometric analysis by reaction of 20 ⁇ l of digest with 180 ⁇ l of Hoechst dye 33258(24). The [ 35 S]sulfate content of the digests was then measured in a scintillation counter (Wallac MicroBeta TriLux, PerkinElmer, Waltham, MA, USA), with corrections for spillover and quenching.
• IGF-I has 3 disulfide bonds and includes 70 amino acids.
• the IGF-I fusion proteins both contain poly-histidine tags for protein purification and Xpress tags for protein detection. Molecular weights of HB-IGF-I and Xpress-IGF-1 are 14,018 Da and 11,548 Da, respectively.
• HB-IGF-I has the HB domain on the N-terminus of IGF-I. The HB domain has 21 amino acids and includes 12 positively charged amino acids.
• Final purification of the new fusion proteins after refolding was performed with RP-HPLC. Identification of the correctly-folded protein was performed as previously described (Milner, et ah, Biochem. J. 308(Pt 3 ⁇ :865-871 (1995)) and confirmed with bioactivity assays. Coomassie blue staining and Western analysis with an anti-Xpress antibody of the refolded IGF-I proteins after RP-
• HB-IGF-I binds to heparin and cell surfaces
• HB-IGF-I binds selectively to heparin. After 2 hours incubation of heparin agarose beads with 300 pmol HB-IGF-I or Xpress-IGF-1, bound proteins were extracted from beads by boiling. Coomassie blue staining of bound protein with heparin agarose beads showed that HB-IGF-I binds selectively to heparin compared with Xpress-IGF-1. Next we tested the ability of HB-IGF-I to bind to cell surfaces, which have heparin sulfate proteoglycans, using 3T3 fibroblast cells and neonatal rat cardiac myocytes.
• HB-IGF-I HB-IGF-I bound to 3T3 fibroblast cells when treated with 10 nM and 100 nM concentrations.
• HB- IGF-I binding to neonatal cardiac myocytes showed clear selective binding of HB-IGF-I at 10 nM and 100 nM and a very weak band of IGF-I at 100 nM. These results are consistent with binding of this HB domain to heparin in the submicromolar range.
• HB-IGF-I was readily detected on the surfaces of cells in the embryoid bodies by immunofluorescence for the Xpress epitope tag, indicating that HB-IGF-I can bind to multiple cell types.
• HB-IGF-I bioactivitv HB-IGF-I bioactivitv
• HB-IGF-I transport in cartilage Cartilage is a proteoglycan-rich tissue, and chondrocytes respond to IGF-I with increased extracellular matrix synthesis. Because prolonged local stimulation of IGF-I signaling could thus be beneficial for cartilage repair, we studied the ability of HB-IGF-I to bind to cartilage. Identically sized bovine articular cartilage disks were incubated with 500 nM HB-IGF-I or Xpress-IGF-1 for 1 day, 3 days or 6 days, and there were no differences in the amount of IGF-I protein that diffused into cartilage over this time period.
• HB-IGF-I increases chondrocyte biosynthesis
• the selective retention of HB-IGF-I to cartilage suggests that this fusion protein could deliver a sustained stimulus for chondrocyte biosynthesis. Therefore, we measured chondrocyte biosynthesis of extracellular matrix proteoglycans by incorporation of [ 35 S]sulfate.
• Cartilage disks were incubated with 100 nM HB-IGF-I, control IGF-I or Xpress-IGF-1 for 2 days and washed 3 times with PBS, followed by culture in medium with no IGF-I.
• [ 35 S]sulfate incorporation was measured for 24 hours beginning on day 0 (before wash-out), day 2 (just after wash-out), day 4, day 6 and day 8.
• control IGF-I, Xpress-IGF-1 and HB-IGF-I groups all stimulated proteoglycan synthesis as expected.
• HB-IGF-I led to sustained stimulation of proteoglycan synthesis for 6 days.
• Proteoglycan synthesis was significantly higher in cartilage incubated with HB-IGF-I vs. Xpress-IGF-1 on days 2, 4, and 6.
• IGF-I Intracellular fibroblasts
• HB-IGF-I a novel IGF-I protein
• IGF-I has four domains: B domain (AA1-29), C domain (AA30-41), A domain (AA42-62) and D domain (AA63-70), with the C domain playing the most important role in binding to the IGF-I receptor. Replacement of the entire C domain causes a 30-fold decrease in affinity for the IGF-I receptor.
• the addition of the heparin-binding domain to the N terminus of IGF-I was not anticipated to interfere with interactions with the IGF-I C domain.
• IGF-I can promote the synthesis of cartilage extracellular matrix and inhibit cartilage degradation (Bonassar, et al, Arch. Biochem. Biophys. 379:57-63 (2000)); however, a practical mode of IGF-I delivery to cartilage has yet to be developed (Schmidt, et ah, Osteoarthritis Cartilage 74:403-412 (2006)). Heparan sulfate proteoglycans are prevalent in the pericellular matrix of cartilage, particularly as chains on perlecan and syndecan-2, and are known to bind other ligands such as FGF-2. Our experiments suggest that HB-IGF-I protein can bind with matrix and increase local, long-term bioavailability to chondrocytes and thus improve cartilage repair.
• HB-IGF-I has potential for use in other tissues.
• IGF-I induces the axon outgrowth of PC 12 cells and corticospinal motor neurons, and thus IGF-I may benefit motor neuron degeneration diseases.
• IGF-I is also effective because IGF-I stimulates collagen synthesis and mitogenicity of fibroblasts and keratinocytes.
• the ability of HB-IGF-I to bind to the surfaces of cells may enhance cell therapies and other regenerative strategies.

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