WO2008038010A1 - Pyrazine derivatives and their use in therapy - Google Patents

Pyrazine derivatives and their use in therapy Download PDF

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Publication number
WO2008038010A1
WO2008038010A1 PCT/GB2007/003687 GB2007003687W WO2008038010A1 WO 2008038010 A1 WO2008038010 A1 WO 2008038010A1 GB 2007003687 W GB2007003687 W GB 2007003687W WO 2008038010 A1 WO2008038010 A1 WO 2008038010A1
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compound
alkyl
hydroxy
piperidin
hydrogen
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PCT/GB2007/003687
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French (fr)
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Lee David Walmsley
Martin James Drysdale
Ijen Chen
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Vernalis (R & D) Limited
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings directly linked by a ring-member-to-ring-member bond
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings

Definitions

  • This invention relates to substituted pyrazine compounds having Aurora A and Aurora B inhibitory activity, to the use of such compounds in medicine, in relation to the treatment of disorders which are responsive to inhibition of Aurora A and Aurora B such as cancer, and to pharmaceutical compositions containing such compounds.
  • Aurora family of serine/threonine protein kinases are critical for proper regulation of mitosis in many organisms. They play a key role in diverse cell cycle events such as entry to mitosis, centrosome function, mitotic spindle formation, chromosome segregation and cytokinesis. Overexpression of Aurora kinases occur in a wide range of human tumours and have been implicated in human tumourigenesis. Mammals express three Aurora Kinase paralogues and at least two (Aurora A and Aurora B) are commonly overexpressed in human tumours. 1
  • the present invention relates to a class of substituted pyrazine compounds useful as inhibitors of Aurora A and Aurora B, for example, for the treatment of cancer.
  • a core amino pyrazine ring substituted on the heterocyclic ring with an optionally substituted benzimidazole is a principle characterising feature of the compounds with which the invention is concerned.
  • R ⁇ is hydrogen, Ci-C 3 alkyl, or fluoro(Ci-C 3 )alkyl
  • R 7 is C- 1 -C 3 alkyl, hydroxy-(C 1 -C 6 )alkyl, hydroxy-(Ci-C 6 )alkyl substituted on the alkyl portion by phenyl, C 1 -C 3 alkoxy-(Ci-C 3 )alkyl, halo(C 1 -C 4 )alkyl, or C 3 -C 6 cycloalkyl; or R 6 and R 7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
  • R 8 is selected from hydrogen, Ci-C 3 alkyl, fluoro(Ci-C 3 )alkyl, or a radical of formula -AIk-N(Rg)-Ri 0 ;
  • Rg and Ri 0 are independently selected from hydrogen, Ci-C 3 alkyl, or fluoroCCrC ⁇ alkyl;
  • Rg and Ri 0 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
  • -AIk- is a divalent (Ci-C 4 )alkylene radical
  • R is hydrogen or CrC 3 alkyl
  • one of A and B is hydrogen and the other is a group -Z-Ar;
  • Ar is aryl or heteroaryl, optionally substituted with one or more halogen atoms, Ci-C 3 alkyl radicals or trifluoromethyl radicals.
  • the active compounds of formula (I) are inhibitors of Aurora Kinases, both A and B paralogues, and are useful for the treatment, prevention and suppression of diseases mediated by Aurora Kinases.
  • the invention is concerned with the use of these compounds to selectively inhibit Aurora Kinases and, as such, in the treatment of cancer.
  • (C a -Cb)alkyl wherein a and b are integers refers to a straight or branched chain alkyl radical having from a to b carbon atoms.
  • a 1 and b is 6, for example, the term includes methyl, ethyl, n- propyl, isopropyl, n-butyl, isobutyl, sec-butyl, t-butyl, n-pentyl and n-hexyl.
  • divalent (C a -Ct,)alkylene radical wherein a and b are integers refers to a saturated hydrocarbon chain having from a to b carbon atoms and two unsatisfied valences.
  • cycloalkyl refers to a saturated carbocyclic radical having from 3-8 carbon atoms and includes, for example, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl and cyclooctyl.
  • aryl refers to a mono-, bi- or tri-cyclic carbocyclic aromatic radical. Illustrative of such radicals are phenyl, biphenyl and napthyl.
  • Carbocyclic refers to a cyclic radical whose ring atoms are all carbon, and includes monocyclic aryl, cycloalkyl and cycloalkenyl radicals.
  • heteroaryl refers to a mono-, bi- or tri-cyclic aromatic radical containing one or more heteroatoms selected from S, N and O.
  • Illustrative of such radicals are thienyl, benzthienyl, furyl, benzfuryl, pyrrolyl, imidazolyl, benzimidazolyl, thiazolyl, benzthiazolyl, isothiazolyl, benzisothiazolyl, pyrazolyl, oxazolyl, benzoxazolyl, isoxazolyl, benzisoxazolyl, isothiazolyl, triazolyl, benztriazolyl, thiadiazolyl, oxadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, indolyl and indazolyl.
  • heterocyclyl or “heterocyclic” includes “heteroaryl” as defined above, and in particular means a mono-, bi- or tricyclic non-aromatic radical containing one or more heteroatoms selected from S, N and O, and to groups consisting of a monocyclic non-aromatic radical containing one or more such heteroatoms which is covalently linked to another such radical or to a monocyclic carbocyclic radical.
  • radicals are pyrrolyl, furanyl, thienyl, piperidinyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, thiadiazolyl, pyrazolyl, pyridinyl, pyrrolidinyl, pyrimidinyl, morpholinyl, piperazinyl, indolyl, morpholinyl, benzfuranyl, pyranyl, isoxazolyl, benzimidaz ⁇ lyl, methylenedioxyphenyl, ethylenedioxyphenyl, maleimido and succinimido groups.
  • substituted as applied to any moiety herein means substituted with up to four compatible substituents, each of which independently may be, for example, (Ci-C 6 )alkyl, (Ci-C 6 )alkoxy, hydroxy, hydroxy(CrC 6 )alkyl, mercapto, mercapto(C r C 6 )alkyl, (Ci-C 6 )alkylthio, halo (including fluoro, bromo and chloro), trifluoromethyl, trifluoromethoxy, nitro, nitrile (-CN), oxo, phenyl, - COOH, -COOR A , -COR A , -SO 2 R A , -CONH 2 , -SO 2 NH 2 , -CONHR A , -SO 2 NHR A , -CONR A R B , -SO 2 NR A R B ,
  • an “optional substituent” may be one of the foregoing substituent groups.
  • substituents Ci-C 6 )alkyl, halo, trifluoromethyl, trifluoromethoxy, trifluoromethylsulfonyl, and phenyl are those most commonly regarded as lipophilic.
  • substituents listed which contain alkyl groups may be lipophilic depending on the particular alkyl groups present.
  • salt includes base addition, acid addition and quaternary salts.
  • Compounds of the invention which are acidic can form salts, including pharmaceutically or veterinarily acceptable salts, with bases such as alkali metal hydroxides, e.g. sodium and potassium hydroxides; alkaline earth metal hydroxides e.g. calcium, barium and magnesium hydroxides; with organic bases e.g. N-methyl-D-glucamine, choline tris(hydroxymethyl)amino- methane, L-arginine, L-lysine, N-ethyl piperidine, dibenzylamine and the like.
  • bases such as alkali metal hydroxides, e.g. sodium and potassium hydroxides; alkaline earth metal hydroxides e.g. calcium, barium and magnesium hydroxides; with organic bases e.g. N-methyl-D-glucamine, choline tris(hydroxymethyl)amino- methane, L-arginine, L-lysine, N-
  • Those compounds (I) which are basic can form salts, including pharmaceutically or veterinarily acceptable salts with inorganic acids, e.g. with hydrohalic acids such as hydrochloric or hydrobromic acids, sulphuric acid, nitric acid or phosphoric acid and the like, and with organic acids e.g. with acetic, tartaric, succinic, fumaric, maleic, malic, salicylic, citric, methanesulphonic, p-toluenesulphonic, benzoic, benzenesunfonic, glutamic, lactic, and mandelic acids and the like.
  • hydrohalic acids such as hydrochloric or hydrobromic acids, sulphuric acid, nitric acid or phosphoric acid and the like
  • organic acids e.g. with acetic, tartaric, succinic, fumaric, maleic, malic, salicylic, citric, methanesulphonic, p-toluenes
  • lipophilic as used herein in relation to a substituent means that it has a positive substituent hydrophobicity constant (D).
  • D hydrophobicity constant
  • 'solvate' is used herein to describe a molecular complex comprising the compound of the invention and a stoichiometric amount of one or more pharmaceutically acceptable solvent molecules, for example, ethanol.
  • solvent molecules for example, ethanol.
  • 'hydrate' is employed when said solvent is water.
  • Compounds with which the invention is concerned which may exist in one or more stereoisomeric form, because of the presence of asymmetric atoms or rotational restrictions, can exist as a number of stereoisomers with R or S stereochemistry at each chiral centre or as atropisomeres with R or S stereochemistry at each chiral axis.
  • the invention includes all such enantiomers and diastereoisomers and mixtures thereof.
  • So-called 'pro-drugs' of the compounds of formula (I) are also within the scope of the invention.
  • certain derivatives of compounds of formula (I) which may have little or no pharmacological activity themselves can, when administered into or onto the body, be converted into compounds of formula (I) having the desired activity, for example, by hydrolytic cleavage.
  • Such derivatives are referred to as 'prodrugs'.
  • Further information on the use of prodrugs may be found in Pro-drugs as Novel Delivery Systems. Vol. 14, ACS Symposium Series (T. Higuchi and W. Stella) and Bioreversible Carriers in Drug Design. Pergamon Press, 1987 (ed. E. B. Roche, American Pharmaceutical Association).
  • Prodrugs in accordance with the invention can, for example, be produced by replacing appropriate functionalities present in the compounds of formula (I) with certain moieties known to those skilled in the art as 'pro-moieties' as described, for example, in Design of Prodrugs by H. Bundgaard (Elsevier, 1985).
  • metabolites of compounds of formula (I), that is, compounds formed in vivo upon administration of the drug are also included within the scope of the invention.
  • Some examples of metabolites include
  • One subclass of compounds are those wherein Ri is selected from - AIk- N(R 6 )-R 7 , or -0-AIk-N(Re)-R 7 .
  • AIk is a divalent (Ci-C 4 )alkylene radical
  • R 6 is hydrogen or Ci-C 3 alkyl
  • R 7 is Ci-C 3 alkyl, hydr ⁇ xy-(Ci- C ⁇ )alkyl, hydroxy-(Ci-Ce)alkyl substituted on the alkyl portion by phenyl, CrC 3 alkoxy-(Ci-C 3 )alkyl, halo Ci-C 4 alkyl, or C 3 -C 6 cycloalkyl; or alternatively R 6 and R 7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring.
  • AIk is methylene, -(CH 2 ) 2 - or -(CH 2 ) 3 -, R 6 is hydrogen, methyl or ethyl, and R 7 is methyl, ethyl, 2-hydroxyethyl, 2-methoxyethyl, 2,2,2- trifluoroethyl, cyclopentyl, -CH(JPr)-CH 2 -OH Or-CH(Ph)-CH 2 -OH.
  • R 6 and R 7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring, with morpholinyl, piperidinyl or piperazinyl optionally substituted by hydroxymethyl, fluoro, hydroxy, methyl, 2-hydroxyethyl, or trifluoromethyl presently preferred.
  • AIk is methylene or -(CH 2 ) 2 -
  • R 6 is hydrogen, methyl or ethyl
  • R 7 is 2-hydroxyethyl, 2-methoxyethyl, - CH(iPr)-CH 2 -OH Or-CH(Ph)-CH 2 -OH
  • AIk is methylene or -(CH 2 ) 2 -, and R 6 and R 7 taken together with the nitrogen atom to which they are attached form 1-fluoro-piperidin-3-yl, 1-hydroxy-piperidin-3-yl, 1-hydroxymethyl-piperidin-3- yl, 1-hydroxymethyl-piperidin-4-yl, 1 -methyI-piperidin-3-yl, 1-(2-hydroxyethyl)- piperidin-3-yl, or 1-trifluoromethyl-piperidin-3-yl.
  • R 8 is selected from hydrogen, Ci-C 3 alkyl or a radical of formula -AIk-N(Rg)-Ri 0 , wherein AIk is a divalent (Ci-C 4 )alkylene radical and Rg and Ri 0 are independently selected from hydrogen or C1-C3 alkyl; or R 9 and R10 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring.
  • R 8 is a radical of formula -AIk- N(Rg)-Ri O , wherein AIk is methylene or -(CH 2 ) 2 -, and Rg and R 10 taken together with the nitrogen atom to which they are attached form optionally substituted piperidinyl or pyrrolidinyl.
  • Particulary preferred compounds are those wherein AIk is methylene or -(CH 2 ) 2 -, and R 9 and R10 taken together with the nitrogen atom to which they are attached form piperidin-1-yl, 1- methyl-piperidin-2-yl, 1-hydroxy-piperidin-4-yl, or 1 -ethyl-pyrrolidin-2-yl.
  • Ri is selected from hydroxy(Ci-C 3 )alkyl. It is presently preferred that Ri is hydroxymethyl or 2- hydroxyethyl.
  • Ri is selected from carboxy(Ci-C 3 )alkyl. It is presently preferred that Ri is carboxymethyl or 2- carboxyethyl.
  • R 2 , R3, R 4 and R 5 are independently selected as for R 1 .
  • Ri, R 2 , R 3 , R 4 and R 5 generally at least three are hydrogen. Preferred cases are wherein Ri, R 2 and R 5 are hydrogen; R 1 , R 2 , R 4 and R 5 are hydrogen; or R 1 , R 2 , R 3 and R 5 are hydrogen. Particularly preferred cases are wherein R 1 , R 2 , R 4 and R 5 are hydrogen; or R 1 , R 2 , R 3 and R 5 are hydrogen.
  • R R is hydrogen or C- 1 -C 3 alkyl. It is presently preferred that R is hydrogen or methyl.
  • Particularly preferred structures are those wherein Ar is phenyl, 2-fluorophenyl, 3-fluorophenyl, 2,3- difluorophenyl, 2,4-difluorophenyl, 3,4-difluorophenyl, 3,5-difluorophenyl, 3- chlorophenyl, 3-methylphenyl, or 3-trifluoromethylphenyl.
  • R 3 is hydrogen or C 1 -C 3 alkyl
  • R 4 is Ci-C 3 alkyl, hydroxy-(C 1 -C 6 )alkyl, hydroxy-(C 1 -C 6 )alkyl substituted on the alkyl portion by phenyl, C1-C 3 alkoxy-(Ci-C 3 )alkyl, halo CrC 4 alkyl, or C 3 -C 6 cycloalkyl;
  • R 3 and R 4 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring;
  • R 5 and Re taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
  • Ar 1 is -1 ,3-phenylene or -1 ,4-phenylene
  • R is hydrogen or methyl
  • one of A and B is hydrogen and the other is a group -Z-Ar 2 ;
  • Ar 2 is halo- or Ci-C 3 alkyl- substituted phenyl.
  • a method of treatment of a disorder mediated by Aurora Kinases comprising administration to a subject in need of such treatment an effective dose of the compound of formula (I), or a pharmaceutically acceptable salt or prodrug thereof.
  • the present invention is particularly directed to a hyperproliferative disease such as cancer, wherein the cancer is colorectal, breast, lung, prostate, bladder, renal or pancreatic cancer, or leukaemia or lymphoma.
  • the present invention may be employed in respect of a human or animal subject, more preferably a mammal, more preferably a human subject.
  • treatment includes prophylactic treatment.
  • the compound of formula (I) may be used in combination with one or more additional drugs useful in the treatment of the disorders mentioned above, the components being in the same formulation or in separate formulations for administration simultaneously or sequentially.
  • a suitable dose for orally administrable formulations will usually be in the range of 0.1 to 3000 mg, once, twice or three times per day, or the equivalent daily amount administered by infusion or other routes.
  • optimum dose levels and frequency of dosing will be determined by clinical trials as is conventional in the art.
  • the compounds with which the invention is concerned may be prepared for administration by any route consistent with their pharmacokinetic properties.
  • the orally administrable compositions may be in the form of tablets, capsules, powders, granules, lozenges, liquid or gel preparations, such as oral, topical, or sterile parenteral solutions or suspensions.
  • Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinyl-pyrrolidone; fillers for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricant, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants for example potato starch, or acceptable wetting agents such as sodium lauryl sulphate.
  • the tablets may be coated according to methods well known in normal pharmaceutical practice.
  • Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use.
  • Such liquid preparations may contain conventional additives such as suspending agents, for example sorbitol, syrup, methyl cellulose, glucose syrup, gelatin hydrogenated edible fats; emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, fractionated coconut oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and if desired conventional flavouring or colouring agents.
  • suspending agents for example sorbitol, syrup, methyl cellulose, glucose syrup, gelatin hydrogenated edible fats
  • emulsifying agents for example lecithin, sorbitan monooleate, or acacia
  • non-aqueous vehicles which may include edible oils
  • almond oil fractionated coconut oil
  • oily esters such as glycerine, propylene
  • the drug may be made up into a cream, lotion or ointment.
  • Cream or ointment formulations which may be used for the drug are conventional formulations well known in the art, for example as described in standard textbooks of pharmaceutics such as the British Pharmacopoeia.
  • the active ingredient may also be administered parenterally in a sterile medium.
  • the drug can either be suspended or dissolved in the vehicle.
  • adjuvants such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle.
  • the cooled reaction mixture was diluted with EtOAc (20ml) and washed with 2N (aq) HCI (20ml). The separated organic layer was washed with brine, dried (MgSO ⁇ and condensed.
  • the crude orange solid was suspended in DME (30ml), MnO 2 (1.02g, 11.7 mmol) was added and heated at 95°C for 6 hr. The reaction mixture was filtered through a plug of celite and condensed.
  • Examples 7 to 59 listed in the following table were prepared by methods analogous to Examples 1 to 6 above. All 59 compounds were tested for activity in kinase assays described below in the Assay section.
  • characterization and/or purification were performed using standard spectroscopic and chromatographic techniques, including liquid chromatography-mass spectroscopy (LC-MS) and high performance liquid chromatography (HPLC), using the conditions described in methods A, B and C.
  • NMR experiments were conducted on a Bruker DPX400 ultra shield NMR spectrometer in the specified solvent. Reactions carried out under microwave irradiation were conducted in a Smith Synthesizer.
  • Ionization was positive or negative ion electrospray Molecular weight scan range was 120-1000
  • Ionization was positive or negative ion electrospray
  • Assays for the Aurora A Kinase activity were carried out by monitoring the phosphorylation of a synthetic peptide, Kemptide (LRRASLG).
  • the assay mixture containing the inhibitor, Aurora A enzyme, and peptide was mixed together in a microtiter plate in a final volume of 50 ⁇ l and incubated for 30min at 3O 0 C.
  • the assay mixture contained 0.01 mM unlabeled ATP, 0.01 ⁇ Ci/ ⁇ l 33 P- ⁇ -ATP, 0.2mM peptide, 0.1 mg/ml BSA, 7.5mM magnesium acetate, 0.04M MOPS, pH 7, 1mM EDTA.
  • the reaction was stopped by adding 50 ⁇ l of 5OmM phosphoric acid.
  • Assays for the human Aurora B Kinase activity were carried out by monitoring the phosphorylation of a synthetic peptide, Paktide (RRRLSFEPG).
  • the assay mixture containing the inhibitor, human Aurora B enzyme, and peptide was mixed together in a microtiter plate in a final volume of 50 ⁇ l and incubated for 30min at 30°C.
  • the assay mixture contained 0.01 mM unlabeled ATP, 0.01 ⁇ Ci/ ⁇ l 33 P- ⁇ -ATP, 140 ⁇ M peptide, 0.05% Brij 35, 5OmM magnesium chloride, 25OmM Hepes, pH 7.5, 5mM EGTA.
  • the reaction was stopped by adding 50 ⁇ l of 5OmM phosphoric acid.
  • Example 5 gave an IC 50 versus Aurora A kinase of O.O ⁇ O ⁇ M and an IC 50 versus Aurora B kinase of O.OO ⁇ M.
  • Fluorescence-activated cell-sorting is a trademarked employed by Becton-Dickinson to describe their method of flow cytometry (FCM).
  • FCM Fluorescence-activated cell-sorting
  • FCM flow cytometry
  • a flow cytometer operates by causing a fluid stream to pass single file through a beam of light usually generated by a laser.
  • the photons of light emitted by the cells, following their interaction with the laser beam, are separated into constituent wavelengths by a series of filters and mirrors. This separated light falls upon individual detectors that generate electrical impulses or analogue signals proportional to the amount of light striking the detectors.
  • Each analogue signal is converted to a digital signal which is accumulated in a frequency distribution or histogram (see figure below).
  • FCM is commonly used to quantify the volume and morphological complexity of cells, enzymatic activity and the quantification and measurement of DNA degradation.
  • the assay has been designed for DNA cell cycle analysis using Propidium Iodide staining of the DNA.
  • HCT-116 cells are grown and maintained by methods that will be familiar to those skilled in the art. For flow cytometry cells are counted and split into a 24-well plate at 30000 cells/well. The next day putative Aurora inhibitors are added at a range of appropriate concentrations (usually tripling dilution series are used). 48 hours later, floating cells are removed, then combined with the corresponding adherent cells that released by treatment with trypsin using methods familiar to those skilled in the art.
  • the combined cell population is pelleted by 5 minutes centrifugation at 200 x g, washed with phosphate buffered saline, then resuspended in a solution containing (50 ug/ml propidium iodide and 0.5 mg/ml RNAase A). 1 hour of incubation at 37 C is sufficient for the digestion of cellular RNAs enabling the amount of propidium iodide associated with cells to be proportional to their DNA content.
  • Samples are then read on a BD FACSArray with the amount of propidium iodine staining being measured for each cell; this yields a fluorescence histogram that plots the number of cells with a particular fluorescence against propidium iodide fluorescence.
  • Untreated cells are bimodally distributed on such a fluorescence histogram with a large peak representing cells with a 2n DNA content (G 1 cells) and a smaller peak composed of cells with approximately double the fluorescence of the first peak representing cells with a 4n DNA content (cells in G2 and mitosis); cells with an intermediate fluorescence represent cells in S phase.
  • Treatment with a pure Aurora A inhibitor is predicted to lead to a sharp increase in the number of cells with a 4n DNA content (though this was not observed for our compounds).
  • Treatment of cells with an Aurora B inhibitor leads to failed cell division, followed by an attempt to re-replicate the genome which leads to the appearance of an 8n peak.
  • the co- inhibition of kinases required for replication will prevent the appearance of the 8n peak and the co-inhibition of kinases required for survival under the culture conditions of the HCT116 cells will result in the appearance of apoptotic cells, which due to the activation of nucleases, will have a DNA content of ⁇ 2n.
  • the range of doses that leads to the appearance of a peak of 8n cells, without the induction of a major sub 2n peak can be used as an indication of the dose range at which an inhibitor imposes an Aurora B blockade without confounding effects on other targets.
  • Example 27 shows 8n down to 0.25 ⁇ M concentrations.
  • Example 5 shows 8n down to 0.74 ⁇ M.
  • Example 40 also shows 8n down to 0.74 ⁇ M.

Abstract

Compounds of formula (I) and their use in therapy, particularly for the treatment of a disorder responsive to inhibition of Aurora kinase A and/or B. Formula (I) wherein R1, R2, R3, R4 and R5 are independently selected from hydrogen, hydroxy, C1- C3 alkyl, fluoro(C1-C3)alkyl, hydroxy(C1-C3)alkyl, C1-C3 alkoxy, fluoro(C1- C3)alkoxy, hydroxyC1-C3alkoxy, -N(R6J-R7, - AIk-N(R6)-R7, -0-AIk-N(R6)-R7, - C(=O)OH, carboxy(C1-C3)alkyl, or -C(=O)-NH-R8; R6, R7,R8 and -AIk- are as defined herein; R is hydrogen or C1C3 alkyl; one of A and B is hydrogen and the other is a group -Z-Ar; -Z- is -C(=O)-NH-, -NH-C(=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)-; and Ar is aryl or heteroaryl, optionally substituted with one or more halogen atoms, C1-C3 alkyl radicals or trifluoromethyl radicals; or a pharmaceutically acceptable salt, hydrate or solvate thereof.

Description

Pyrazine Derivatives And Their Use In Therapy
This invention relates to substituted pyrazine compounds having Aurora A and Aurora B inhibitory activity, to the use of such compounds in medicine, in relation to the treatment of disorders which are responsive to inhibition of Aurora A and Aurora B such as cancer, and to pharmaceutical compositions containing such compounds.
Background to the invention
Aurora Kinases
The Aurora family of serine/threonine protein kinases are critical for proper regulation of mitosis in many organisms. They play a key role in diverse cell cycle events such as entry to mitosis, centrosome function, mitotic spindle formation, chromosome segregation and cytokinesis. Overexpression of Aurora kinases occur in a wide range of human tumours and have been implicated in human tumourigenesis. Mammals express three Aurora Kinase paralogues and at least two (Aurora A and Aurora B) are commonly overexpressed in human tumours.1
Inhibition of the Aurora Kinase activity in tumour cell lines typically leads to the accumulation of polyploid cells, apoptosis and block of proliferation.2'3 In-vivo "small molecule" inhibitors of Aurora kinases have recently demonstrated remarkable efficacy in animal tumour models. VX-680, a potent specific inhibitor or Aurora A and Aurora B kinases, has been shown to suppress tumour growth in-vivo and this agent has progressed into clinical trials.4 Agents that inhibit Aurora kinases may therefore be useful for the therapy of cancer.
1 EMBO J. 1998, 17, 3052
2 EMBO J. 2002, 21 , 483
3 J. Cell Biol. 2003, 161 (2), 267-280
4 Nat. Med. 2004, 10(3), 262-327 Brief description of the invention
The present invention relates to a class of substituted pyrazine compounds useful as inhibitors of Aurora A and Aurora B, for example, for the treatment of cancer. A core amino pyrazine ring substituted on the heterocyclic ring with an optionally substituted benzimidazole is a principle characterising feature of the compounds with which the invention is concerned.
Detailed description of the invention
According to the present invention, there is provided a compound of formula (I) or a pharmaceutically acceptable salt, hydrate or solvate thereof
Figure imgf000003_0001
(I)
wherein
Ri, R2, R3, R4 and R5 are independently selected from hydrogen, hydroxy, Cr C3 alkyl, fluoro(Ci-C3)alkyl, hydroxy(Ci-C3)alkyl, C1-C3 alkoxy, fluoro(Ci- C3)alkoxy, hydroxy(C1-C3)alkoxy, -N(Re)-Rr1 - AIk-N(Re)-R7, -O-Alk-N(R6)-R7, - C(=O)OH, carboxytd-C^alkyl, or -C(=O)-NH~R8;
Rβ is hydrogen, Ci-C3 alkyl, or fluoro(Ci-C3)alkyl, and
R7 is C-1-C3 alkyl, hydroxy-(C1-C6)alkyl, hydroxy-(Ci-C6)alkyl substituted on the alkyl portion by phenyl, C1-C3 alkoxy-(Ci-C3)alkyl, halo(C1-C4)alkyl, or C3-C6 cycloalkyl; or R6 and R7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
R8 is selected from hydrogen, Ci-C3 alkyl, fluoro(Ci-C3)alkyl, or a radical of formula -AIk-N(Rg)-Ri0;
Rg and Ri0 are independently selected from hydrogen, Ci-C3 alkyl, or fluoroCCrC^alkyl;
or Rg and Ri0 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
-AIk- is a divalent (Ci-C4)alkylene radical;
R is hydrogen or CrC3 alkyl;
one of A and B is hydrogen and the other is a group -Z-Ar;
-Z- is -C(=O)-NH- , -NH-C(=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)- ; and
Ar is aryl or heteroaryl, optionally substituted with one or more halogen atoms, Ci-C3 alkyl radicals or trifluoromethyl radicals.
The active compounds of formula (I) are inhibitors of Aurora Kinases, both A and B paralogues, and are useful for the treatment, prevention and suppression of diseases mediated by Aurora Kinases. The invention is concerned with the use of these compounds to selectively inhibit Aurora Kinases and, as such, in the treatment of cancer.
As used herein the term "carboxy" refers to a group of formula -COOH. 03687
As used herein, the term "(Ca-Cb)alkyl" wherein a and b are integers refers to a straight or branched chain alkyl radical having from a to b carbon atoms. Thus when a is 1 and b is 6, for example, the term includes methyl, ethyl, n- propyl, isopropyl, n-butyl, isobutyl, sec-butyl, t-butyl, n-pentyl and n-hexyl.
As used herein the term "divalent (Ca-Ct,)alkylene radical" wherein a and b are integers refers to a saturated hydrocarbon chain having from a to b carbon atoms and two unsatisfied valences..
As used herein the term "cycloalkyl" refers to a saturated carbocyclic radical having from 3-8 carbon atoms and includes, for example, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl and cyclooctyl.
As used herein the term "aryl" refers to a mono-, bi- or tri-cyclic carbocyclic aromatic radical. Illustrative of such radicals are phenyl, biphenyl and napthyl.
As used herein the term "carbocyclic" refers to a cyclic radical whose ring atoms are all carbon, and includes monocyclic aryl, cycloalkyl and cycloalkenyl radicals.
As used herein the term "heteroaryl" refers to a mono-, bi- or tri-cyclic aromatic radical containing one or more heteroatoms selected from S, N and O. Illustrative of such radicals are thienyl, benzthienyl, furyl, benzfuryl, pyrrolyl, imidazolyl, benzimidazolyl, thiazolyl, benzthiazolyl, isothiazolyl, benzisothiazolyl, pyrazolyl, oxazolyl, benzoxazolyl, isoxazolyl, benzisoxazolyl, isothiazolyl, triazolyl, benztriazolyl, thiadiazolyl, oxadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, indolyl and indazolyl.
As used herein the unqualified term "heterocyclyl" or "heterocyclic" includes "heteroaryl" as defined above, and in particular means a mono-, bi- or tricyclic non-aromatic radical containing one or more heteroatoms selected from S, N and O, and to groups consisting of a monocyclic non-aromatic radical containing one or more such heteroatoms which is covalently linked to another such radical or to a monocyclic carbocyclic radical. Illustrative of such radicals are pyrrolyl, furanyl, thienyl, piperidinyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, thiadiazolyl, pyrazolyl, pyridinyl, pyrrolidinyl, pyrimidinyl, morpholinyl, piperazinyl, indolyl, morpholinyl, benzfuranyl, pyranyl, isoxazolyl, benzimidazσlyl, methylenedioxyphenyl, ethylenedioxyphenyl, maleimido and succinimido groups.
Unless otherwise specified in the context in which it occurs, the term "substituted" as applied to any moiety herein means substituted with up to four compatible substituents, each of which independently may be, for example, (Ci-C6)alkyl, (Ci-C6)alkoxy, hydroxy, hydroxy(CrC6)alkyl, mercapto, mercapto(CrC6)alkyl, (Ci-C6)alkylthio, halo (including fluoro, bromo and chloro), trifluoromethyl, trifluoromethoxy, nitro, nitrile (-CN), oxo, phenyl, - COOH, -COORA, -CORA, -SO2RA, -CONH2, -SO2NH2, -CONHRA, -SO2NHRA, -CONRARB, -SO2NRARB, -NH2, -NHRA, -NRARB, -OCONH2, -OCONHRA , -OCONRARB, -NHCORA, -NHCOORA, -NRBCOORA, -NHSO2ORA, -NR6SO2OH, -NRBSO2ORA,-NHCONH2, -NRACONH2, -NHCONHR6 -NRACONHRB, -NHCONRARB or -NRACONRARB wherein RA and RB are independently a (CrC6)alkyl group. An "optional substituent" may be one of the foregoing substituent groups. Of the above substituents, (Ci-C6)alkyl, halo, trifluoromethyl, trifluoromethoxy, trifluoromethylsulfonyl, and phenyl are those most commonly regarded as lipophilic. Other substituents listed which contain alkyl groups may be lipophilic depending on the particular alkyl groups present.
As used herein the term "salt" includes base addition, acid addition and quaternary salts. Compounds of the invention which are acidic can form salts, including pharmaceutically or veterinarily acceptable salts, with bases such as alkali metal hydroxides, e.g. sodium and potassium hydroxides; alkaline earth metal hydroxides e.g. calcium, barium and magnesium hydroxides; with organic bases e.g. N-methyl-D-glucamine, choline tris(hydroxymethyl)amino- methane, L-arginine, L-lysine, N-ethyl piperidine, dibenzylamine and the like. Those compounds (I) which are basic can form salts, including pharmaceutically or veterinarily acceptable salts with inorganic acids, e.g. with hydrohalic acids such as hydrochloric or hydrobromic acids, sulphuric acid, nitric acid or phosphoric acid and the like, and with organic acids e.g. with acetic, tartaric, succinic, fumaric, maleic, malic, salicylic, citric, methanesulphonic, p-toluenesulphonic, benzoic, benzenesunfonic, glutamic, lactic, and mandelic acids and the like.
The term "lipophilic" as used herein in relation to a substituent means that it has a positive substituent hydrophobicity constant (D). (A positive value for D indicates that the substituent is more lipophilic than hydrogen, whereas a negative value indicates it is less lipophilic, i.e. more hydrophilic, than hydrogen).
For a review on suitable salts, see Handbook of Pharmaceutical Salts: Properties. Selection, and Use by Stahl and Wermuth (Wiiey-VCH, Weinheim, Germany, 2002).
The term 'solvate' is used herein to describe a molecular complex comprising the compound of the invention and a stoichiometric amount of one or more pharmaceutically acceptable solvent molecules, for example, ethanol. The term 'hydrate' is employed when said solvent is water.
Compounds with which the invention is concerned which may exist in one or more stereoisomeric form, because of the presence of asymmetric atoms or rotational restrictions, can exist as a number of stereoisomers with R or S stereochemistry at each chiral centre or as atropisomeres with R or S stereochemistry at each chiral axis. The invention includes all such enantiomers and diastereoisomers and mixtures thereof.
So-called 'pro-drugs' of the compounds of formula (I) are also within the scope of the invention. Thus certain derivatives of compounds of formula (I) which may have little or no pharmacological activity themselves can, when administered into or onto the body, be converted into compounds of formula (I) having the desired activity, for example, by hydrolytic cleavage. Such derivatives are referred to as 'prodrugs'. Further information on the use of prodrugs may be found in Pro-drugs as Novel Delivery Systems. Vol. 14, ACS Symposium Series (T. Higuchi and W. Stella) and Bioreversible Carriers in Drug Design. Pergamon Press, 1987 (ed. E. B. Roche, American Pharmaceutical Association).
Prodrugs in accordance with the invention can, for example, be produced by replacing appropriate functionalities present in the compounds of formula (I) with certain moieties known to those skilled in the art as 'pro-moieties' as described, for example, in Design of Prodrugs by H. Bundgaard (Elsevier, 1985).
Also included within the scope of the invention are metabolites of compounds of formula (I), that is, compounds formed in vivo upon administration of the drug. Some examples of metabolites include
(i) where the compound of formula (I) contains a methyl group, an hydroxymethyl derivative thereof (-CH3 -> -CH2OH):
(ii) where the compound of formula (I) contains an alkoxy group, an hydroxy derivative thereof (-OR -> -OH);
where the compound of formula (I) contains a tertiary amino group, a secondary amino derivative thereof (-NR1R2 -> -NHR1 or -NHR2);
(iv) where the compound of formula (I) contains a secondary amino group, a primary derivative thereof (-NHR1 -> -NH2);
(v) where the compound of formula (I) contains a phenyl moiety, a phenol derivative thereof (-Ph -> -PhOH); and
(vi) where the compound of formula (I) contains an amide group, a carboxylic acid derivative thereof (-CONH2 -> COOH).
The radical R1 Ri is selected from hydrogen, hydroxy, Ci-C3 alkyl, fluoro(Ci-C3)alkyl, hydroxy(C1-C3)alkyl, Ci-C3 alkoxy, fluoro(Ci-C3)alkoxy, hydroxy(Ci-C3)alkoxy, -N(Re)-R71 - AIk-N(Re)-R7, -0-AIk-N(Re)-R7, -C(=O)OH, carboxy(Ci-C3)alkyl, or -C(=O)-NH-R8.
One subclass of compounds are those wherein Ri is selected from - AIk- N(R6)-R7, or -0-AIk-N(Re)-R7. In such cases AIk is a divalent (Ci-C4)alkylene radical; R6 is hydrogen or Ci-C3 alkyl, and R7 is Ci-C3 alkyl, hydrσxy-(Ci- Cβ)alkyl, hydroxy-(Ci-Ce)alkyl substituted on the alkyl portion by phenyl, CrC3 alkoxy-(Ci-C3)alkyl, halo Ci-C4 alkyl, or C3-C6 cycloalkyl; or alternatively R6 and R7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring. It is currently preferred that AIk is methylene, -(CH2)2- or -(CH2)3-, R6 is hydrogen, methyl or ethyl, and R7 is methyl, ethyl, 2-hydroxyethyl, 2-methoxyethyl, 2,2,2- trifluoroethyl, cyclopentyl, -CH(JPr)-CH2-OH Or-CH(Ph)-CH2-OH. Alternatively, R6 and R7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring, with morpholinyl, piperidinyl or piperazinyl optionally substituted by hydroxymethyl, fluoro, hydroxy, methyl, 2-hydroxyethyl, or trifluoromethyl presently preferred. In a particulary preferred subclass of compounds AIk is methylene or -(CH2)2-, R6 is hydrogen, methyl or ethyl, and R7 is 2-hydroxyethyl, 2-methoxyethyl, - CH(iPr)-CH2-OH Or-CH(Ph)-CH2-OH; or AIk is methylene or -(CH2)2-, and R6 and R7 taken together with the nitrogen atom to which they are attached form 1-fluoro-piperidin-3-yl, 1-hydroxy-piperidin-3-yl, 1-hydroxymethyl-piperidin-3- yl, 1-hydroxymethyl-piperidin-4-yl, 1 -methyI-piperidin-3-yl, 1-(2-hydroxyethyl)- piperidin-3-yl, or 1-trifluoromethyl-piperidin-3-yl.
Another subclass of compounds are those wherein Ri is selected from - C(=O)-NH-R8. In such cases R8 is selected from hydrogen, Ci-C3 alkyl or a radical of formula -AIk-N(Rg)-Ri0, wherein AIk is a divalent (Ci-C4)alkylene radical and Rg and Ri0 are independently selected from hydrogen or C1-C3 alkyl; or R9 and R10 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring. It is presently preferred that R8 is a radical of formula -AIk- N(Rg)-RiO, wherein AIk is methylene or -(CH2)2-, and Rg and R10 taken together with the nitrogen atom to which they are attached form optionally substituted piperidinyl or pyrrolidinyl. Particulary preferred compounds are those wherein AIk is methylene or -(CH2)2-, and R9 and R10 taken together with the nitrogen atom to which they are attached form piperidin-1-yl, 1- methyl-piperidin-2-yl, 1-hydroxy-piperidin-4-yl, or 1 -ethyl-pyrrolidin-2-yl.
In another subclass of compounds Ri is selected from hydrogen.
In yet another subclass of compounds Ri is selected from hydroxy.
Another subclass of compounds are those wherein Ri is selected from hydroxy(Ci-C3)alkyl. It is presently preferred that Ri is hydroxymethyl or 2- hydroxyethyl.
In a further subclass of compounds Ri is selected from -C(=O)OH.
Another subclass of compounds are those wherein Ri is selected from carboxy(Ci-C3)alkyl. It is presently preferred that Ri is carboxymethyl or 2- carboxyethyl.
The radicals R2, R3, R4 and R5
R2, R3, R4 and R5 are independently selected as for R1.
Of the radicals Ri, R2, R3, R4 and R5, generally at least three are hydrogen. Preferred cases are wherein Ri, R2 and R5 are hydrogen; R1, R2, R4 and R5 are hydrogen; or R1, R2, R3 and R5 are hydrogen. Particularly preferred cases are wherein R1, R2, R4 and R5 are hydrogen; or R1, R2, R3 and R5 are hydrogen.
Group R R is hydrogen or C-1-C3 alkyl. It is presently preferred that R is hydrogen or methyl.
Groups A and B
One of A and B is hydrogen and the other is a group -Z-Ar, wherein -Z- is - C(=O)-NH- , -NH-C(=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)- and Ar is aryl or heteroaryl, optionally substituted with one or more halogen atoms, C1-C3 alkyl radicals or trifluoromethyl radicals. It is presently preferred that aryl is phenyl and heteroaryl is pyridyl or N-oxido-pyridyl. Particularly preferred structures are those wherein Ar is phenyl, 2-fluorophenyl, 3-fluorophenyl, 2,3- difluorophenyl, 2,4-difluorophenyl, 3,4-difluorophenyl, 3,5-difluorophenyl, 3- chlorophenyl, 3-methylphenyl, or 3-trifluoromethylphenyl.
A preferred subclass of the compounds with which the invention is concerned has formula (II):
Figure imgf000011_0001
(II)
wherein
R1 is hydrogen, hydroxy, hydroxy(CrC3)alkyl, -C(=O)OH, carboxy(C-i- C3)alkyl, hyd TOXy(C1 -C3)alkoxy, a radical of formula -(CH2)n-N(R3)-R4 wherein n is 1 or 2, a radical of formula -O-(CH2)n-N(R3)-R4 wherein n is 1 or 2, or a radical of formula -C(=O)-NH-(CH2)p-N(R5)-R6 wherein p is 1 , 2 or 3;
R3 is hydrogen or C1-C3 alkyl, and R4 is Ci-C3 alkyl, hydroxy-(C1-C6)alkyl, hydroxy-(C1-C6)alkyl substituted on the alkyl portion by phenyl, C1-C3 alkoxy-(Ci-C3)alkyl, halo CrC4 alkyl, or C3-C6 cycloalkyl;
or R3 and R4 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring;
R5 and Re taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
Ar1 is -1 ,3-phenylene or -1 ,4-phenylene;
R is hydrogen or methyl;
one of A and B is hydrogen and the other is a group -Z-Ar2;
-Z- is -C(=O)-NH- , -NH-CO=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)- ; and
Ar2 is halo- or Ci-C3 alkyl- substituted phenyl.
Specific compounds with which the invention is concerned include those of the Examples, particularly those exemplified compounds which have structure (II) above.
According to a further aspect of the invention, there is provided for use in therapy a compound of formula (I).
According to a further aspect of the invention, there is provided the use of a compound of formula (I) in the manufacture of a medicament for the treatment of a disorder mediated by Aurora Kinases.
According to a further aspect of the present invention there is provided a method of treatment of a disorder mediated by Aurora Kinases comprising administration to a subject in need of such treatment an effective dose of the compound of formula (I), or a pharmaceutically acceptable salt or prodrug thereof.
The present invention is particularly directed to a hyperproliferative disease such as cancer, wherein the cancer is colorectal, breast, lung, prostate, bladder, renal or pancreatic cancer, or leukaemia or lymphoma.
The present invention may be employed in respect of a human or animal subject, more preferably a mammal, more preferably a human subject.
As used herein, the term "treatment" as used herein includes prophylactic treatment.
The compound of formula (I) may be used in combination with one or more additional drugs useful in the treatment of the disorders mentioned above, the components being in the same formulation or in separate formulations for administration simultaneously or sequentially.
It will be understood that the specific dose level for any particular patient will depend upon a variety of factors including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, rate of excretion, drug combination and the causative mechanism and severity of the particular disease undergoing therapy. In general, a suitable dose for orally administrable formulations will usually be in the range of 0.1 to 3000 mg, once, twice or three times per day, or the equivalent daily amount administered by infusion or other routes. However, optimum dose levels and frequency of dosing will be determined by clinical trials as is conventional in the art.
The compounds with which the invention is concerned may be prepared for administration by any route consistent with their pharmacokinetic properties. The orally administrable compositions may be in the form of tablets, capsules, powders, granules, lozenges, liquid or gel preparations, such as oral, topical, or sterile parenteral solutions or suspensions. Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinyl-pyrrolidone; fillers for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricant, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants for example potato starch, or acceptable wetting agents such as sodium lauryl sulphate. The tablets may be coated according to methods well known in normal pharmaceutical practice. Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may contain conventional additives such as suspending agents, for example sorbitol, syrup, methyl cellulose, glucose syrup, gelatin hydrogenated edible fats; emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, fractionated coconut oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and if desired conventional flavouring or colouring agents.
For topical application to the skin, the drug may be made up into a cream, lotion or ointment. Cream or ointment formulations which may be used for the drug are conventional formulations well known in the art, for example as described in standard textbooks of pharmaceutics such as the British Pharmacopoeia.
The active ingredient may also be administered parenterally in a sterile medium. Depending on the vehicle and concentration used, the drug can either be suspended or dissolved in the vehicle. Advantageously, adjuvants such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle.
There are multiple synthetic strategies for the synthesis of the compounds (I) with which the present invention is concerned, but all rely on known chemistry, known to the synthetic organic chemist. Thus, compounds according to formula (I) can be synthesised according to procedures described in the standard literature and are well-known to the one skilled in the art. Typical literature sources are "Advanced organic chemistry", 4th Edition (Wiley), J March, "Comprehensive Organic Transformation", 2nd Edition (Wiley), R.C. Larock , "Handbook of Heterocyclic Chemistry", 2nd Edition (Pergamon), A. R. Katritzky), review articles such as found in "Synthesis", "Ace. Chem. Res." , "Chem. Rev", or primary literature sources identified by standard literature searches online or from secondary sources such as "Chemical Abstracts" or "Beilstein". Such literature methods include those of the preparative Examples herein, and methods analogous thereto.
Suitable routes to compounds of formula (I) are shown below in schemes 1 to 7.
Scheme 1
Figure imgf000015_0001
Scheme 2
Figure imgf000015_0002
Scheme 3
Figure imgf000016_0001
Scheme 4
Figure imgf000016_0002
Scheme 5
Figure imgf000016_0003
Scheme 6
Figure imgf000016_0004
Scheme 7
Figure imgf000017_0001
Examples
The following examples illustrate the preparation and activities of specific compounds of the invention.
Example 1
1.1 Synthesis of S-amino-δ-β-hydroxymethyl-phenyO-pyrazine^-carboxylic acid methyl ester
Figure imgf000017_0002
To a solution of 3-amino-6-bromo-pyrazine-2-carboxylic acid methyl ester (3g, 12.9 mmol) in DMF (40ml) was added 3-(hydroxymethyl)benzoic acid (2.16g, 14.22 mmol) followed by Et3N (2.7ml, 19.39 mmol) under nitrogen at room temperature. The mixture was stirred for 10 min before adding 1 ,1'-bis[dit- butylphosphino)ferrocene]paliadium chloride (0.25g, 0.039 mmol) and stirred overnight at 900C. The cooled reaction mixture was condensed. The residue dissolved in THF-EtOAc mixture (200ml, 1 :1), filtered to remove catalyst and evaporated. The filtrated was washed with brine, dried (MgSO4) and condensed. The resultant brown solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (3:1 , v/v) ethyl acetate and hexane to give title compound (1.61g, 48%) as a yellow/orange solid; LC/MS: Rt 1.74 (Method A) [M+H]+ 260.
1.2 Synthesis of 3-amino-6-[3-(tert-butyldimethylsilanyloxymethyl)-phenyl]- pyrazine-2-carboxylic acid methyl ester
Figure imgf000018_0001
To a solution of 3-amino-6-(3-hydroxymethyl-phenyl)-pyrazine-2-carboxylic acid methyl ester (1.61g, 6.21 mmol) in DMF (20ml) was added tert- butyldimethylsilyl chloride (1.12g, 7.46 mmol) followed by imidazole (0.51g, 7.46 mmol) under nitrogen at 00C. The mixture was allowed to warm to room temperature and stirred for 3 hr. The reaction mixture was condensed. The residue dissolved in EtOAc (200ml), washed with brine, dried (MgSO4) and condensed. The resultant solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (1 :4, v/v) ethyl acetate and hexane to give title compound (2.09g, 90%) as a yellow solid; LC/MS: Rt 2.88 (Method A) [M+H]+ 374; 1H-NMR (400MHz, D6 DMSO) g 0.10 (6H, s), 0.93 (9H, s), 3.89 (3H, s), 4.79 (2H1 s), 7.31 (1 H, m), 7.45 (3H, m), 7.87(1 H, m), 7.98 (1H, s broad), 8.88 (1 H, s).
1.3 Synthesis of 3-amino-6-[3-(tert-butyl-dimethyl-silanyloxymethyl)-phenyl]- pyrazine-2-carbaldehyde
Figure imgf000019_0001
To a solution of 3-amino-6-[3-(tert-butyldimethylsilanyloxymethyl)-phenyl]- pyrazine-2-carboxylic acid methyl ester (2.09g, 5.6 mmol) in THF (30ml) was added LiAIH4 powder (0.64g, 16.8 mmol) in portion at 00C. The mixture was allowed to warm to ambient temperature and stirred for 3 hr. The reaction mixture was cooled and quenched with 2N (aq) NaOH (2-3 drops) and water until reaction subsided. The solution was extracted with ethyl acetate, filtered, washed with brine, dried (MgSO4) and condensed. The crude residue was suspended in DME (30ml), MnO2 (9.7g, 11.2 mmol) was added and heated at 950C for 2 hr. The reaction mixture was filtered through a plug of celite and condensed. The resultant solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (1 :4, v/v) ethyl acetate and hexane to give title compound (0.83g, 43%) as a yellow solid; LC/MS: Rt 2.93 (Method A) [M+H]+ 344; ; 1H-NMR (400MHz, D6 DMSO) D 0.10 (6H, s), 0.93 (9H, s), 4.80 (2H, s), 7.35 (1 H, m), 7.46 (1H, m), 7.81 (2H, s broad), 7.92 (1 H, m), 8.01 (1 H, s broad), 8.95 (1 H, s), 10.00 (1H, s).
1.4 Synthesis of N-(3-fluoro-phenyl)-3,4-dinitro-benzamide
Figure imgf000019_0002
A mixture of 3,4-dinitrobenzoic acid (10g, 47.14 mmol) and thionyl chloride (17.2ml, 235 mmol) was heated at 800C overnight. The cooled reaction mixture was condensed; toluene was added (10ml) and removed in vacuum. The residue was dissolved in DCM (10ml) and 3-fluoroanaline (1.09ml, 11.3 mmol) in DCM (5ml) was added dropwise at 00C. The mixture was allowed to warm to ambient temperature and stirred for 4 hr. The reaction mixture was condensed. The residue dissolved in EtOAc (200ml), washed with 1 N (aq) HCI (100 ml), sat. (aq) NaHCO3 (100ml), brine, dried (MgSO4) and condensed. The resultant solid residue was triturated with diethyl ether to give title compound (8.69g, 60%) as a yellow solid; 1H-NMR (400MHz, D6 DMSO) D 7.01 (1 H, m), 7.44 (1 H, m), 7.54 (1 H, m), 7.73 (1 H, m), 8.42(1 H, m), 8.48 (1 H, m), 8.73 (1 H, d), 10.89 (1 H, s broad).
1.5 Synthesis of 3,4-diamino-N-(3-fluoro-phenyl)-benzamide
Figure imgf000020_0001
A mixture of N-(3-fluoro-phenyl)-3,4-dinitro-benzamide (8.69g, 28.47 mmol) and 5% Pt/C (0.9g, catalytic) in DMF (5 ml) was agitated under an atmosphere of hydrogen at room temperature for 8 hr. The reaction mixture was filtered to remove catalyst and evaporated. The resultant solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (4:1 , v/v) ethyl acetate and hexane to give title compound (4.1g, 59%) as a pale brown solid; LC/MS: Rt 1.76 (Method A) [M+H]+ 246; 1H-NMR (400MHz, D6 DMSO) P 4.66 (2H, s broad), 5.15 (2H, s broad), 6.53 (1 H, d), 6.83 (1 H, m), 7.12 (2H, m), 7.31 (1 H, m), 7.52 (1 H, m), 7.72 (1 H, m), 9.89 (1H, s broad).
1.6 Synthesis of 2-[3-amino-6-(3-formyl-phenyl)-pyrazin-2-yl]-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000021_0001
A suspension of 3-amino-6-[3-(tert-butyl-dimethyl-silanyloxymethyl)-phenyl]- pyrazine-2-carbaldehyde (0.4g, 1.17 mmol) and 3,4-diamino-N-(3-fluoro- phenyl)-benzamide (0.85g, 4.66 mmol) in acetonitrile (10ml) was added sodium bisulphite (0.24g, 2.34 mmol) and heated at 90°C overnight. More sodium bisulphite was added (0.24g, 2.34 mmol) and the mixture heated at reflux for further 24 hr. The cooled reaction mixture was diluted with EtOAc (20ml) and washed with 2N (aq) HCI (20ml). The separated organic layer was washed with brine, dried (MgSO^ and condensed. The crude orange solid was suspended in DME (30ml), MnO2 (1.02g, 11.7 mmol) was added and heated at 95°C for 6 hr. The reaction mixture was filtered through a plug of celite and condensed. The resultant solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (3:1 , v/v) ethyl acetate and hexane to give title compound (0.09g, 17%) as a yellow/orange solid; LC/MS: Rt 2.60 (Method A) [M+H]+ 453.
1.7 Synthesis of 2-{3-amino-6-[3-(3-hydroxymethyl-piperidin-1-ylmethyl)- phenyl]-pyrazin-2-yi}-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)- amide
Figure imgf000021_0002
To a suspension of 2-[3-amino-6-(3-formyl-phenyl)-pyrazin-2-yl]-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide (0.03g, 0.06 mmol) in THF (5ml) was added 3-piperidinemethanol (0.023g, 0.20 mmol) followed by sodium triacetoxyborohydride (0.042g, 0.20 mmol) at room temperature. The reaction was stirred for 4 hr, diluted with EtOAc (4ml), washed with saturated NaHCO3 (5ml), brine, dried (MgSO-O and condensed. The resultant solid residue was subjected to flash column chromatography on silica eluting gradient of DCM to (5%, v/v) methanol and DCM to give title compound (0.012g, 32%) as a yellow solid; LC/MS: Rt 1.89 (Method A) [M+H]+ 552.
Example 2
2-[3-Amino-6-(3-{[ethyl-(2-hydroxy-ethyl)-amino]-methyl}-phenyl)-pyrazin-2-yl]- 1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000022_0001
2-[3-Amino-6-(3-{[ethyl-(2-hydroxy-ethyl)-amino]-methyl}-phenyl)-pyrazin-2-yl]- 1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide was prepared by methods analogous to Example 1 ; LC/MS: Rt 1.91 (Method A) [M+H]+ 526.
Example 3
2-[3-Amino~6-(3-piperidin-1-ylmethyl-phenyl)~pyrazin-2-yl]-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000023_0001
2-[3-Amino-6-(3-piperidin-1-yImethyl-phenyl)-pyrazin-2-yl]-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide was prepared by methods analogous to reference Example 7; LC/MS: Rt 1.95 (Method A) [M+H]+ 522.
Example 4
4.1 Synthesis of 3-amino-6-{3-[2-(tert-butyl-dimethyl-silanyloxy)-ethyl]-phenyl}- pyrazine-2-carboxylic acid
Figure imgf000023_0002
A suspension of S-amino-β-bromo-pyrazine^-carboxylic acid (0.5g, 2.3 mmol) and 3-[2-(tert-butyl-dimethyl-silanyloxy)-ethyl]-phenylboronic acid (patent WO 2003076422, 1.28g, 4.6 mmol) in MeCN (20ml) was treated with K2CO3 (3.8g, 27.5 mmol) in H2O (5ml) under nitrogen at room temperature. The mixture was stirred for 10 min before adding bis(triphenylphosphine)palladium dichloride (0.08g, catalytic) and stirred at 9O0C for 3 hr. The cooled reaction mixture was dilute with H2O (20ml), basified to ph4, filtered to remove catalyst and evaporated. The residue dissolved in DCM (200ml), washed with brine, dried (MgSO4) and condensed. The solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (2:1 , v/v) ethyl acetate and hexane to give title compound (0.38g, 44%) as a yellow solid; LC/MS: Rt 2.78 (Method A) [M+H]+ 374.
4.2 Synthesis of 2-{3-amino-6-[3-(2-hydroxy-ethyl)-phenyl]-pyrazin-2-yl}-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000024_0001
A solution of 3-amino-6-{3-[2-(tert-butyl~dimethyl-silanyloxy)-ethyl]-phenyl}- pyrazine-2-carboxylic acid (0.38g, 1.02 mmol) and 3,4-diamino-N-(3-fluoro- phenyl)-benzamide (0.262g, 1.07 mmol) in THF (20ml) was treated with HOBt (0.179g, 1.32 mmol), EDCI (0.253g, 1.32 mmol) and DIPEA (0.35ml, 2.03 mmol) under nitrogen at room temperature. The reaction mixture was stirred overnight and condensed. The residue dissolved in acetic acid (20ml) and heated at 13O0C for 5 hr. HCI (37% wt, 4ml) was added and the mixture stirred at 1300C for further 2 hr. The cooled reaction mixture was condensed, dissolved in H2O (20ml) and basified to ph7. The solution was extracted with EtOAc-THF mixture (100ml, 3:1), washed with brine, dried (MgSO4) and condensed. The resultant orange oil was dissolved in methanol (10ml) and treated with 1 M (aq) K2CO3 (2ml) at room temperature. The reaction mixture was allowed to stir at room temperature for 3 hr and condensed. The residue dissolved in THF-EtOAc mixture (50ml, 2:1), washed with brine, dried (MgSO4) and condensed. The solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (3:1 , v/v) ethyl acetate and hexane to give title compound (0.3Og, 63%) as a yellow solid; LC/MS: Rt 2.45 (Method A) [M+H]+ 469. 4.3 Synthesis of 2~{3-amino-6-[3-(2-oxo-ethyl)-phenyl]-pyrazin-2-yl}-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000025_0001
A suspension of 2-{3-amino-6-[3-(2-hydroxy-ethyl)-phenyl]-pyrazin-2-yl}-1 H- benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide (0.29g, 0.62 mmol) in THF (20ml) was treated with IBX (0.52g, 1.86 mmol) and heated at 900C for 2 hr. The cooled reaction mixture was filtered and condensed. The solid residue was subjected to flash column chromatography on silica eluting gradient of hexane to (3:1 , v/v) ethyl acetate and hexane to give title compound (0.14g, 48%) as a yellow solid; LC/MS: Rt 2.45 (Method A) [M+H]+ 469; TLC Rt 0.66 (EtOAc-hexane, 2:1).
4.4 2-[3-Amino-6-(3-{2-[ethyl-(2-hydroxy-ethyl)-amino]-ethyl}-phenyl)-pyrazin- 2-yl]-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000025_0002
2-[3-Amino-6-(3-{2-[ethyl-(2-hydroxy-ethyl)-amino]-ethyl}-phenyl)-pyrazin-2- yl]-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide was prepared by methods analogous to Example 1 ; LC/MS: Rt 1.94 (Method A) [M+H]+ 540. Example 5
2-(3-Amino-6-{3-[2-(4-hydroxymethyl-piperidin-1-yl)-ethyl]-phenyl}-pyrazin-2- yl)-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000026_0001
2-(3-Amino-6-{3-[2-(4-hydroxymethyl-piperidin-1-yl)-ethyl]-phenyl}-pyrazin-2- yl)-1 H-benzoimidazole-5-carboxylic acid (3-fluorc-phenyl)-amide was prepared by methods analogous to reference Example 7; LC/MS: Rt 1.92 (Method A) [M+H]+ 566.
Example 6
2-(3-Amino-6-{3-[2-(3-hydroxymethyl-piperidin-1-yl)-ethyI]-phenyl}-pyrazin-2- yl)-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide
Figure imgf000026_0002
2-(3-Amino-6-{3-[2-(3-hydroxymethyl-piperidin-1-yl)-ethyl]-phenyl}-pyrazin-2- yl)-1 H-benzoimidazole-5-carboxylic acid (3-fluoro-phenyl)-amide was prepared by methods analogous to reference Example 7; LC/MS: Rt 1.96 (Method A) [M+H]+ 566.
Examples 7 to 59 listed in the following table were prepared by methods analogous to Examples 1 to 6 above. All 59 compounds were tested for activity in kinase assays described below in the Assay section.
Figure imgf000027_0001
Figure imgf000028_0001
Figure imgf000029_0001
Figure imgf000030_0001
Figure imgf000031_0001
Figure imgf000032_0001
Figure imgf000033_0001
Figure imgf000034_0001
In the examples, characterization and/or purification were performed using standard spectroscopic and chromatographic techniques, including liquid chromatography-mass spectroscopy (LC-MS) and high performance liquid chromatography (HPLC), using the conditions described in methods A, B and C. NMR experiments were conducted on a Bruker DPX400 ultra shield NMR spectrometer in the specified solvent. Reactions carried out under microwave irradiation were conducted in a Smith Synthesizer.
LCMS Method A
Instrument: HP1100 Column: Luna 3 μm, C18(2), 30 mm x 4.6 mm i.d. from
Phenomenex
Temperature: 22 °C Solvents: A - Water + 10 mmol / L ammonium acetate + 0.08% (v/v) formic acid
B - 95% Acetonitrile-5% Solvent A + 0.08% (v/v) formic acid
Gradient:
Figure imgf000035_0001
Detection: UV detection at 230, 254 and 270 nm Mass Spec: HP1100 MSD, series A
Ionization was positive or negative ion electrospray Molecular weight scan range was 120-1000
Method B
Instrument: Waters FractionLynx MS autopurification system Column: Luna 5 μm, C18(2), 100 mm x 21.2 mm i.d. from
Phenomenex
Temp: ambient Solvents: A- water + 0.08% (v/v) formic acid
B- 95% methanol-water + 0.08% (v/v) formic acid
Flow rate: 20 cm3 min~1
Gradient:
Figure imgf000036_0001
Detection: Photodiode array 210 to 400 nm Mass spec: MicroMass ZQ
Ionization was positive or negative ion electrospray
Molecular weight scan range was 150-1000
Collection: Triggered on selected mass ion
Method C
Instrument: Waters 2695 pump module and 2700 sample manager Column: Gemini 5μm, C18 110A, 30 mm x 2mm i.d. from Phenomenex. Pt no 00A-4435-B0 Temperature: 22 °C Solvents: A - Water + 10 mmol / ammonium formate + 0.08% (v/v) formic acid at pH 3.5 B - 100% Acetonitrile + 0.025% (v/v) formic acid
Injection Volume 5uL Gradient:
Figure imgf000037_0001
Detection: UV detection from 220 to 400nm ( 1 :3 split ) Mass Spec: Waters ZQ2000, M/z range 100 to 900
Assay Protocols
Aurora A
Assays for the Aurora A Kinase activity were carried out by monitoring the phosphorylation of a synthetic peptide, Kemptide (LRRASLG). The assay mixture containing the inhibitor, Aurora A enzyme, and peptide was mixed together in a microtiter plate in a final volume of 50μl and incubated for 30min at 3O0C. The assay mixture contained 0.01 mM unlabeled ATP, 0.01 μCi/μl 33P-γ-ATP, 0.2mM peptide, 0.1 mg/ml BSA, 7.5mM magnesium acetate, 0.04M MOPS, pH 7, 1mM EDTA. The reaction was stopped by adding 50μl of 5OmM phosphoric acid. 90μl of the mixture were transferred to a pre-wetted 96-well Multiscreen MAPHNOB filtration plate (Millipore) and filtered on a vacuum manifold. The filter plate was washed with 3 successive additions of 200μl 5OmM phosphoric acid and then with 100μl methanol. The filtration plate was dried for 10 min at 650C1 scintillant added and phosphorylated peptide quantified in a scintillation counter (Trilux, PerkinElmer).
Aurora B
Assays for the human Aurora B Kinase activity were carried out by monitoring the phosphorylation of a synthetic peptide, Paktide (RRRLSFEPG). The assay mixture containing the inhibitor, human Aurora B enzyme, and peptide was mixed together in a microtiter plate in a final volume of 50μl and incubated for 30min at 30°C. The assay mixture contained 0.01 mM unlabeled ATP, 0.01μCi/μl 33P-γ-ATP, 140μM peptide, 0.05% Brij 35, 5OmM magnesium chloride, 25OmM Hepes, pH 7.5, 5mM EGTA. The reaction was stopped by adding 50μl of 5OmM phosphoric acid. 90μl of the mixture were transferred to a pre-wetted 96-well Multiscreen MAPHNOB filtration plate (Millipore) and filtered on a vacuum manifold. The filter plate was washed with 3 successive additions of 200μl 5OmM phosphoric acid and then with 100μl methanol. The filtration plate was dried for 10 min at 650C, scintillant added and phosphorylated peptide quantified in a scintillation counter (Trilux, PerkinElmer).
All compounds tested in the above assays were found to have Aurora kinase inhibition in the range IC50 = 0.003 μM to 1 μM.
By way of illustration, the compound of Example 5 gave an IC50 versus Aurora A kinase of O.OδOμM and an IC50 versus Aurora B kinase of O.OOδμM.
Cellular responses to Aurora inhibition
Specific Aurora A inhibitors will arrest cells with a 4n DNA content (a phenotype also imposed by the inhibition of several other kinases). Compounds with substantial Aurora B inhibitory activity will promote mitotic exit without cell division. If these cells are capable of replicating their DNA (which implies that various other kinases are not inhibited including Cdc7, CDK2 etc) then a peak of 8n cells will appear.
Flow Cytometry Assay
Fluorescence-activated cell-sorting (FACS) is a trademarked employed by Becton-Dickinson to describe their method of flow cytometry (FCM). FCM is a method for sorting a suspension of biological cells into two or more containers one cell at a time, based upon the specific light scattering and fluorescent characteristics of each cell. In this particular implementation the cells are not collected post sorting.
A flow cytometer operates by causing a fluid stream to pass single file through a beam of light usually generated by a laser. The photons of light emitted by the cells, following their interaction with the laser beam, are separated into constituent wavelengths by a series of filters and mirrors. This separated light falls upon individual detectors that generate electrical impulses or analogue signals proportional to the amount of light striking the detectors. Each analogue signal is converted to a digital signal which is accumulated in a frequency distribution or histogram (see figure below).
It is possible to deduce various facts about the physical and chemical structure of each particle from the data generated. FCM is commonly used to quantify the volume and morphological complexity of cells, enzymatic activity and the quantification and measurement of DNA degradation. However in this case the assay has been designed for DNA cell cycle analysis using Propidium Iodide staining of the DNA.
Figure imgf000040_0001
HCT-116 cells are grown and maintained by methods that will be familiar to those skilled in the art. For flow cytometry cells are counted and split into a 24-well plate at 30000 cells/well. The next day putative Aurora inhibitors are added at a range of appropriate concentrations (usually tripling dilution series are used). 48 hours later, floating cells are removed, then combined with the corresponding adherent cells that released by treatment with trypsin using methods familiar to those skilled in the art. The combined cell population is pelleted by 5 minutes centrifugation at 200 x g, washed with phosphate buffered saline, then resuspended in a solution containing (50 ug/ml propidium iodide and 0.5 mg/ml RNAase A). 1 hour of incubation at 37 C is sufficient for the digestion of cellular RNAs enabling the amount of propidium iodide associated with cells to be proportional to their DNA content. Samples are then read on a BD FACSArray with the amount of propidium iodine staining being measured for each cell; this yields a fluorescence histogram that plots the number of cells with a particular fluorescence against propidium iodide fluorescence. Untreated cells are bimodally distributed on such a fluorescence histogram with a large peak representing cells with a 2n DNA content (G 1 cells) and a smaller peak composed of cells with approximately double the fluorescence of the first peak representing cells with a 4n DNA content (cells in G2 and mitosis); cells with an intermediate fluorescence represent cells in S phase. Treatment with a pure Aurora A inhibitor is predicted to lead to a sharp increase in the number of cells with a 4n DNA content (though this was not observed for our compounds). Treatment of cells with an Aurora B inhibitor leads to failed cell division, followed by an attempt to re-replicate the genome which leads to the appearance of an 8n peak. Note that the co- inhibition of kinases required for replication will prevent the appearance of the 8n peak and the co-inhibition of kinases required for survival under the culture conditions of the HCT116 cells will result in the appearance of apoptotic cells, which due to the activation of nucleases, will have a DNA content of < 2n. Therefore the range of doses that leads to the appearance of a peak of 8n cells, without the induction of a major sub 2n peak can be used as an indication of the dose range at which an inhibitor imposes an Aurora B blockade without confounding effects on other targets.
Example 27 Example 5 Example 40
Figure imgf000041_0003
Figure imgf000041_0002
Figure imgf000041_0001
Figure imgf000041_0004
Example 27 shows 8n down to 0.25μM concentrations. Example 5 shows 8n down to 0.74μM. Example 40 also shows 8n down to 0.74μM.

Claims

Claims
1. A compound of formula (I) or a pharmaceutically acceptable salt, hydrate or solvate thereof
Figure imgf000043_0001
(I)
wherein
Ri, R2, R3, R4 and R5 are independently selected from hydrogen, hydroxy, C1- C3 alkyl, fluoro(C1-C3)alkyl, hydroxy(C1-C3)alkyl, C1-C3 alkoxy, fluoro(C1- C3)alkoxy, hydroxy(C1-C3)alkoxy, -N(R6)-R7,- AIk-N(R6)-R7, -0-AIk-N(R6)-R7, - C(=O)OH, carboxy(C1-C3)alkyl, or -C(=O)-NH-R8;
R6 is hydrogen, C1-C3 alkyl, or fluoro(C1-C3)alkyl, and
R7 is C1-C3 alkyl, hydroxy-(C1 -C6)alkyl, hydroxy-(C1-C6)alkyl substituted on the alkyl portion by phenyl, C1-C3 alkoxy-(C1-C3)alkyl, halo(C1-C4)alkyl, or C3-C6 cycloalkyl;
or R6 and R7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
R8 is selected from hydrogen, C1-C3 alkyl, fluoro(C1-C3)alkyl, or a radical of formula -AIk-N(R9)-Ri0; Rg and R10 are independently selected from hydrogen, C-1-C3 alkyl, or fluoro(Ci-C3)alkyl;
or Rg and R10 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
-AIk- is a divalent (C-i-C-4)alkylene radical;
R is hydrogen or C1-C3 alkyl;
one of A and B is hydrogen and the other is a group -Z-Ar;
-Z- is -C(=O)-NH- , -NH-C(=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)- ; and
Ar is aryl or heteroaryl, optionally substituted with one or more halogen atoms, C1-C3 alkyl radicals or trifluoromethyl radicals.
2. A compound as claimed in claim 1 wherein Ri to R5 are independently selected from hydrogen, hydroxy, hydroxy(Ci-C3)alkyl, hydroxy(Ci-C3)alkoxy, -C(=O)OH, carboxy(Ci-C3)alkyl, - AIk-N(Re)-R7, -O-Alk-N(R6)-R7 or -C(=O)- NH-R8.
3. A compound as claimed in claim 1 or claim 2 wherein Ri to R5 are independently selected from hydrogen, hydroxymethyl, hydroxymethoxy, or 2- hydroxyethyl.
4. A compound as claimed in claim 1 or claim 2 wherein Re is hydrogen, methyl or ethyl, and R7 is methyl, ethyl, 2-hydroxyethyl, 2-methoxyethyl, 2,2,2- trifluoroethyl, cyclopentyl, -CH(JPr)-CH2-OH Or-CH(Ph)-CH2-OH.
5. A compound as claimed in claim 1 or claim 2 wherein Re and R7 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring.
6. A compound as claimed in claim 5 wherein R6 and R7 taken together with the nitrogen atom to which they are attached form optionally substituted morpholinyl, piperidinyl or piperazinyl.
7. A compound as claimed in claim 5 or claim 6 wherein Re and R7 taken together with the nitrogen atom to which they are attached form morpholin-4- yl, 1-methyl-piperazin-4-yl, or piperidin-1-yl optionally substituted by hydroxymethyl, fluoro, hydroxy, methyl, 2-hydroxyethyl, or trifluoromethyl.
8. A compound as claimed in claim 7 wherein R6 and R7 taken together with the nitrogen atom to which they are attached form 1-fluoro-piperidin-3-yl, 1-hydroxy-piperidin-3-yl, 1-hydroxymethyl-piperidin-3-yl, 1-hydroxymethyl- piperidin-4-yl, i-methyl-piperidin-3-yl, 1-(2-hydroxyethyl)~piperidin~3-yl, or 1- trifluoromethyl-piperidin-3-yl.
9. A compound as claimed in claim 1 or claim 2 wherein R8 is a radical of formula -AIk-N(Rg)-R10.
10. A compound as claimed in claim 9 wherein R9 and Rio taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring.
11. A compound as claimed in claim 10 wherein R9 and Rio taken together with the nitrogen atom to which they are attached form optionally substituted piperidinyl or pyrrolidinyl.
12. A compound as claimed in claim 10 or claim 11 wherein R9 and Rio taken together with the nitrogen atom to which they are attached form piperidin-1-yl, 1-methyl-piperidin-2-yl, 1-hydroxy-piperidin-4-yl, or 1-ethyl- pyrrolidin-2-yl.
13. A compound as claimed in any of the preceding claims wherein AIk is methylene, -(CH2^- or -(CH2)3-.
14. A compound as claimed in any of the preceding claims wherein R is hydrogen.
15. A compound as claimed in any of claims 1 to 13 wherein R is methyl.
16. A compound as claimed in any of the preceding claims wherein -Z- is - C(=O)-NH-.
17. A compound as claimed in any of claims 1 to 15 wherein -Z- is -NH- C(O)-.
18. A compound as claimed in any of the preceding claims wherein Ar is phenyl, 2-fluorophenyl, 3-fluorophenyl, 2,3-difluorophenyl, 2,4-difluorophenyl, 3,4-difluorophenyl, 3,5-difluorophenyl, 3-chlorophenyl, 3-methylphenyl, or 3- trifluoromethylphenyl.
19. A compound as claimed in any of claims 1 to 17 wherein Ar is pyridyl or N-oxido-pyridyl optionally substituted with one or more halogen atoms, C1-C3 alkyl radicals or trifluoromethyl radicals.
20. A compound of formula (II) or a pharmaceutically acceptable salt, hydrate or solvate thereof
Figure imgf000046_0001
(II)
wherein R1 is hydrogen, hydroxy, hydroxy(C1-C3)alkyl, -C(=O)OH, carboxy(Cr C3)alkyl, hydroxy(Ci-C3)alkoxy, a radical of formula -(CH2)n-N(R3)-R4 wherein n is 1 or 2, a radical of formula -O-(CH2)n-N(R3)-R4 wherein n is 1 or 2, or a radical of formula -C(=O)-NH-(CH2)p-N(R5)-R6 wherein p is 1 , 2 or 3;
R3 is hydrogen or Ci-C3 alkyl, and
R4 is C1-C3 alkyl, hydroxy-(Ci-C6)alkyl, hydroxy-(Ci-C6)alkyl substituted on the alkyl portion by phenyl, Ci-C3 alkoxy-(Ci-C3)alkyl, halo CrC4 alkyl, or C3-C6 cycloalkyl;
or R3 and R4 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 6-membered heterocyclic ring;
R5 and Re taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring;
Ari is -1 ,3-phenylene or -1 ,4-phenylene;
R is hydrogen or methyl;
one of A and B is hydrogen and the other is a group -Z-Ar2;
-Z- is -C(=O)-NH- , -NH-CO=O)-, -C(=O)-N(-CH3)-, or -N(-CH3)-C(=O)- ; and
Ar2 is halo- or Ci-C3 alkyl- substituted phenyl.
21. A compound as claimed in claim 20 wherein Ri is hydrogen.
22. A compound as claimed in claim 20 wherein Ri is hydroxy.
23. A compound as claimed in claim 20 wherein Ri is hydroxy(Ci-C3)alkyl.
24. A compound as claimed in claim 20 wherein Ri is -C(=O)OH.
25. A compound as claimed in claim 20 wherein Ri is carboxy(Ci-C3)alkyl.
26. A compound as claimed in claim 20 wherein Ri is -CH2-N(Rs)-R4.
27. A compound as claimed in claim 20 wherein Ri is -(C Ha)2-N(Rs)-R4.
28. A compound as claimed in claim 20 wherein Ri is -O-CH2-N(R3)-R4.
29. A compound as claimed in claim 20 wherein Ri is -O-(CH2)2-N(R3)-R4.
30. A compound as claimed in claim 20 wherein Ri is -C(=O)-NH-(CH2)P- N(R5)-Re and p is 1 , 2 or 3.
31. A compound as claimed in claim 20 wherein Ri is hydroxymethyl, hydroxymethoxy, or 2-hydroxyethyl.
32. A compound as claimed in claim 20 or claims 26 to 29 wherein R3 is hydrogen, methyl or ethyl, and R4 is methyl, ethyl, 2-hydroxyethyl, 2- methoxyethyl, 2,2,2-trifluoroethyl, cyclopentyl, -CH(JPr)-CH2-OH or-CH(Ph)- CH2-OH.
33. A compound as claimed in claim 20 or claims 26 to 29 wherein R3 and R4 taken together with the nitrogen atom to which they are attached form morpholin-4-yl, or piperidin-1-yl optionally substituted by hydroxymethyl, fluoro, hydroxy, methyl, 2-hydroxyethyl, or trifluoromethyl.
34. A compound as claimed in claim 33 wherein R3 and R4 taken together with the nitrogen atom to which they are attached form 1 -fluoro-piperidin-3-yl, 1-hydroxy-piperidin-3-yl, 1-hydroxymethyl-piperidin-3-yl, 1 -hydroxy methyl- piperidin-4-yl, 1-methyl-piperidin-3-yl, 1-(2-hydroxyethyl)-piperidin-3-yl, or 1- trifluoromethyl-piperidin-3-yl.
35. A compound as claimed in claim 20 or claim 30 wherein R5 and R6 taken together with the nitrogen atom to which they are attached form an optionally substituted monocyclic 5- or 6-membered heterocyclic ring.
36. A compound as claimed in claim 35 wherein R5 and R6 taken together with the nitrogen atom to which they are attached form optionally substituted piperidinyl or pyrrolidinyl.
37. A compound as claimed in claim 35 or claim 36 wherein R5 and R6 taken together with the nitrogen atom to which they are attached form piperidin-1-yl, 1-methyl-piperidin-2-yl, 1-hydroxy-piperidin-4-yl, or 1-ethyl- pyrrolidin-2-yl.
38. A compound as claimed in any of claims 20 to 37 wherein Ar2 is phenyl, 2-fluorophenyl, 3-fluorophenyl, 2,3-difluorophenyl, 2,4-difluorophenyl, 3,4-difluorophenyl, 3,5-difluorophenyl, 3-chlorophenyl, 3-methylphenyl, or 3- trifluoromethylphenyl.
39. A pharmaceutical composition comprising a compound as claimed in any of the preceding claims and a pharmaceutically acceptable carrier.
40. The use of a compound as claimed in any of the preceding claims in the preparation of a composition for the treatment of conditions responsive to inhibition of Aurora Kinase activity.
41. A method of treatment of a mammal suffering from a condition responsive to inhibition of Aurora Kinase activity, comprising administering to the mammal an amount of a compound as claimed in any of claims 1 to 38 effective to inhibit Aurora Kinase activity in the mammal.
42. The use as claimed in claim 40 or a method as claimed in claim 41 wherein the condition responsive to inhibition of Aurora Kinase activity is a hyperproliferative disease such as cancer.
43. The use or method as claimed in claim 42 wherein the cancer is colorectal, breast, lung, prostate, bladder, renal or pancreatic cancer, or leukaemia or lymphoma.
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