WO2007006079A1 - Management of plant pathogens - Google Patents
Management of plant pathogens Download PDFInfo
- Publication number
- WO2007006079A1 WO2007006079A1 PCT/AU2006/000952 AU2006000952W WO2007006079A1 WO 2007006079 A1 WO2007006079 A1 WO 2007006079A1 AU 2006000952 W AU2006000952 W AU 2006000952W WO 2007006079 A1 WO2007006079 A1 WO 2007006079A1
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- WO
- WIPO (PCT)
- Prior art keywords
- plant
- weevil
- corn
- beetle
- pest
- Prior art date
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/32—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Bacillus (G)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/81—Protease inhibitors
- C07K14/8107—Endopeptidase (E.C. 3.4.21-99) inhibitors
- C07K14/811—Serine protease (E.C. 3.4.21) inhibitors
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/81—Protease inhibitors
- C07K14/8107—Endopeptidase (E.C. 3.4.21-99) inhibitors
- C07K14/811—Serine protease (E.C. 3.4.21) inhibitors
- C07K14/8121—Serpins
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8286—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A40/00—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
- Y02A40/10—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
- Y02A40/146—Genetically Modified [GMO] plants, e.g. transgenic plants
Definitions
- the present invention relates generally to a multi-faceted approach to the control of plant pathogens including plant pests. More particularly, the present invention relates to plants such as crop plants genetically modified to produce at least two pesticidal or pestistatic agents which in combination provide the plant with enhanced resistance or reduced susceptibility to plant pests. The present invention further provides genetic constructs encoding the pesticidal or pestistatic agents and compositions comprising the agents. An integrated plant pest management strategy is also part of the present invention.
- Plant pathogens including insect pests and fungi are a major contributor to losses in agricultural crops.
- the European corn borer alone is estimated to cost the corn growing industry up to a billion dollars a year in the United States in lost production and control measures.
- One particularly important agricultural crop is cotton.
- the cotton industry is a rapidly growing cash crop in many countries and in Australia, for example, approximately 200,000 bales of cotton are spun each year. Of these, 94% are sent for export.
- cotton plants are susceptible to a wide range of pests and the cost of controlling pest infestation in cotton in Australia alone is in the tens of millions of dollars.
- the primary method of controlling plant pests such as insects is the use of varying spectrum chemical insecticides and fungicides.
- One approach is the use of more natural agents.
- One such agent is a serine proteinase inhibitor.
- the inhibitors can comprise 10% or more of the stored proteins (Richardson, 1977 supra), while in leaves of tomato and potato (Green and Ryan, Science 116-111, 1972), and alfalfa (Brown and Ryan, 1984 supra), proteinase inhibitors can accumulate to levels of 2% of the soluble protein within 48 hours of insect attack, or other types of wounding (Brown and Ryan, 1984 supra; Graham et al, Plants 169:399-405, 1986). High levels of these inhibitors (up to 50% of total soluble protein) are also present in unripe fruits of the wild tomato, Lycopersicon peruvianum (Pearce et al, Planta 775:527-531, 1988).
- Type I inhibitors are small proteins (monomer Mr 8100) which inhibit chymotrypsin at a single reactive site (Melville and Ryan, Archives of Biochemistry and Biophysics 138:100-102, 1970; Plunkett et al, Arch Biochem Biophys 213:463-412, 1982).
- Inhibitors of the type II family generally contain two reactive sites, one of which inhibits chymotrypsin and the other trypsin (Bryant et al, Biochemistry 75:3418-3424, 1976;
- the serine proteinase inhibitor precursor from tobacco, NaPI has been particularly well characterized and used in pest control (See United States Patent Nos. 6,031,087, 6,440,727, 6,451,573 and 6,261,821 all of which are incorporated herein by reference).
- Certain species of microorganisms are also known to possess pathogenocidal activity against a broad range of pests including Lepidoptera, Diptera, Coleptera, Hemiptera and others.
- Bacillus thuringiensis and Bacillus papilliae are two particularly useful biological control agents. Pesticidal activity is concentrated in parasporal crystalline protein inclusions although pesticidal proteins have also been isolated from the vegetative growth stage of Bacillus.
- Several genes encoding pesticidal proteins have been cloned and characterised (See United States Patent Nos. 5,366,982 and 5,840,868).
- Corn and cotton plants have been genetically engineered to produce pesticidal ⁇ - endotoxins and crytoxins from B. thuringiensis (Aronson Cell MoI Life Sci 59(3):4l7-425, 2002; Schnepfet ⁇ /, Microbiol MoI Biol Rev 62 (3):775-806, 1998).
- At least one agent is a serine proteinase inhibitor or a precursor thereof, and at least one other agent acts in a manner different to a proteinase inhibitor.
- at least one agent is a Bt protein such as a Cry family protein a Vegetative Insecticidal Protein (VIP) or is a defensin like molecule.
- the serine proteinase inhibitor is from the Solanaceae family such as but not limited to NaPI from tobacco.
- Pesticidal or pestistatic agents are generally introduced into a desired plant which is then rendered genetically capable of producing the pesticidal or pestistatic agents.
- the two or more pesticidal or pestistatic modules confer enhanced, increased, more stable, more efficacious, greater pesticidal or pestistatic activity, broader spectrum and/or longer lasting resistance or reduced susceptibility to pest infestation.
- pest includes any plant pathogen or insect or any agent which carriers a serine proteinase. Examples of plant pests include fungi, yeasts, and insects. Insects groups particular contemplated by the present invention include such as Helicoverpa, Leptiderpa, Coleoptera, Diptera, Orthoptera, Diatraea and Spocloptera.
- one aspect of the present invention provides a plant genetically modified to produce at least two pesticidal or pestistatic agents wherein at least one agent is a serine proteinase inhibitor or precursor thereof wherein in precursor form, comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one other monomer is a chymotrypsin inhibitor and wherein at least one other agent is not a serine proteinase inhibitor.
- the present invention provides a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and wherein at least one other agent is a non-serine proteinase inhibitor, wherein said plant exhibits resistance or reduced susceptibility to a pest.
- at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and wherein at least
- the serine proteinase inhibitor or precursor is from tobacco and is referred to as NaPI.
- the other agent is an endotoxin such as a Bt protein including a Cry family protein, Cry, VIP or is a defensin or a component thereof. Reference to a defensin includes its N-terminal portion, acidic tail and/or a central portion alone or fused to a heterologous protein.
- another aspect of the present invention provides a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is the NaPI precursor or a monomer thereof or a recombinant or derivative thereof and wherein at least one other agent is a non-serine proteinase inhibitor wherein said plant exhibits resistance or reduced susceptibility to a pest.
- Another aspect of the present invention contemplates a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and wherein at least one other agent is a non-serine proteinase inhibitor, wherein said plant exhibits resistance or reduced susceptibility to a pest except and wherein at least one other agent is a Bt family protein such as a Cry family protein or defensin.
- Cry proteins include Cry9, Cry2, Cry3, Cry IAc, VIP.
- the present invention is directed to a genetically modified plant or its progeny resulting from self crossing, back crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is NaPI precursor or a monomer thereof or a recombinant or derivative thereof and wherein at least one other agent is a non-serine proteinase inhibitor wherein said plant exhibits resistance or reduced susceptibility to a pest except wherein the least one other agent is selected from the list comprising a Bt protein and a defensin.
- the present invention further provides two or more genetic constructs encoding the at least two pesticidal or pestistatic agents or a single construct encoding the at least two agents.
- compositions capable of being applied to crops, leaves, seeds, flowers or roots such as by spray, paint, powder or micronized vapour and comprising the at least two agents are contemplated by the present invention.
- Figure 1 is a graphical representation of a mass of larvae surviving on a diet of cotton leaf discs coated with Cryl Ac.
- the control leaf discs were from cv Coker; the test leaf discs were from cv Coker homozygous for the NaPI gene. (Note: Leaves were selected to give only a small reduction in weight of larvae.)
- Figure 2 is a graphical representation of a mass of larvae surviving on a diet of cotton leaf discs coated with Cryl Ac.
- the control leaf discs were from cv Coker; the test leaf discs were from cv Coker homozygous for the NaPI gene.
- Figure 3 is a graphical representation of mortality of larvae after feeding on a diet of cotton leaves coated with Cry IAc.
- the control leaf discs were from cv Coker; the test leaf discs were from cv Coker expressing the NaPI gene.
- Figure 4 is a graphical representation showing the average weight of larvae from day 11 to day 12 (approximately 20 hours). Error bars represent standard error of the mean.
- Figure 5 is a graphical representation showing the mean increase in larval mass from day 11 to day 12. Error bars represent standard error of the mean.
- the present invention provides a multi-faceted approach to pest control in plants, and in particular crop plants.
- references to a "multi-faceted approach” means the use of two or more agents in combination to effect a pesticidal or pestistatic outcome on a targets pest or group of pests on commencement of or during its infestation or attempted infestation of a plant.
- the multi-faceted approach is modular in design in that each pesticidal or pestistatic agent is considered a modular component. Different modular components are used in the overall pest management system.
- pestistatic is meant the reduction in growth or reproduction or colonization ability of a pest without necessitating death of the pest. Whilst pesticidal activity is preferred, a pestistatic effect is acceptable and forms part of the present invention.
- pesticidal activity includes “insecticidal activity” when the target pest is an insect or “fungicidal activity” when the target pest is a fungus or “bacteriocidal activity” when the target pest is a bacterium or “nematodicidal activity” when the target pest is a nematode.
- agents also referred to as a "pesticidal modular component” against a pest.
- the activity is conveniently measured in terms of the effect on pest mortality, pest weight loss, pest repellency and other behavioural, physiological and/or physical changes of the pest including ability to digest protein, the ability to grow, maintain itself and/or reproduce after exposure to the agent.
- the agent has an adverse effect on pest fitness as determined by at least one measurable parameter.
- at least two agents have an effect on pest fitness which may be additive or synergistic or otherwise complementary.
- the at least two agents may exhibit the same effect on the measurable parameter of pest fitness or the combined effect may differ to the individual effects of each agent.
- at least one agent may exhibit pesticidal activity and another agent may exhibit pestistatic activity.
- both agents or the combined effect of the agents is pesticidal.
- the agents are proteinaceous in nature when they are produced by plant cells but may be chemically modified when incorporated into a pesticidal or pestistatic composition.
- the agents may, therefore, be peptides, polypeptides or proteins as described herein or chemical analogs or chemical mimetics or functional equivalents.
- the agents exhibit an effect on pests which effect may be referred to as an "impact”.
- impacts including changes in feeding ability or habits or capacity, ability to undergo development changes, cytotoxicity, growth retardation, reduction in reproductivity, effects on eggs or larvae, and mortality or morbidity of the pest.
- efficacy of the pesticidal or pestistatic activity can be assess by the effect on the crop plant e.g. growth yeild, fewer pests, reduced pathology.
- the subject agents are provided to or in a plant in a "pesticidal effective amount” or in a “pestistatic effective amount”. These amounts connotes the quantity of agents, separately or in combination, to provide individual or overall pesticidal or pestistatic activity or other appropriate impact.
- a plant includes a monocotyledonous plant or a dicotyledonous plant and the plant may be generated from genetically transformed callus or tissue or it may be a progeny of the transformed plant or a cross between the transformed plant or its progeny and a non-transformed plant.
- the term plant includes plant cells, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant calli, plant clumps, and plant cells that are intact in plants or parts of plants such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruit, kernels, ears, cobs, husks, stalks, roots, root tips, anthers, and the like.
- plants of interest include, but are not limited to, corn (Zea mays), Brassica sp. (e.g., B. napus, B. rapa, B. junce ⁇ ), particularly those Brassica species useful as sources of seed oil, alfalfa (Medicago sativ ⁇ ), rice (Oryza sativa), rye (Secale cereale), sorghum (Sorghum bicolor, Sorghum vulgare), millet (e.g., pearl millet (Pennisetum glaucum), proso millet (Panicum miliaceum), foxtail millet (Setaria italic ⁇ ), finger millet (Eleusine coracana), sunflower (Helianthus annuus), safflower (Carthamus tinctorius), wheat (Triticum aestivum), soybean (Glycine max), tobacco (Nicotiana tabacum), potato (Solarium tuberosum), peanuts (Arachis hypogaea), Brass
- Vegetables include tomatoes (Lycopersicon esculentum), lettuce (e.g., Lactuca sativa), green beans (Phaseolus vulgaris), lima beans (Phaseolus limensis), peas (Lathyrus spp.), and members of the genus Cucumis such as cucumber (C sativus), cantaloupe (C. cantalupensis), and musk melon (C melo).
- tomatoes Locopersicon esculentum
- lettuce e.g., Lactuca sativa
- green beans Phaseolus vulgaris
- lima beans Phaseolus limensis
- peas Lathyrus spp.
- members of the genus Cucumis such as cucumber (C sativus), cantaloupe (C. cantalupensis), and musk melon (C melo).
- Ornamentals include azalea (Rhododendron spp.), hydrangea (Macrophylla hydrangea), hibiscus (Hibiscus rosasanensis), roses (Rosa spp.), tulips (Tulipa spp.), daffodils (Narcissus spp.), petunias (Petunia hybrida), carnation (Dianthus caryophyllus), poinsettia (Euphorbia pulcherrima), and chrysanthemum.
- Conifers that may be employed in practicing the present invention include, for example, pines such as loblolly pine (Pinus taeda), slash pine (Pinus elliotii), ponderosa pine (Pinus ponderosa), lodgepole pine (Pinus contorta), and Monterey pine (Pinus radiata); Douglas- fir (Pseudotsuga menziesii); Western hemlock (Tsuga canadensis); Sitka spruce (Picea glauca); redwood (Sequoia sempervirens); true firs such as silver fir (Abies amabilis) and balsam fir (Abies balsamea); and cedars such as Western red cedar (Thuja plicata) and Alaska yellow-cedar (Chamaecyparis nootkatensis).
- pines such as loblolly pine (Pinus taeda), slash pine (
- Plants of the present invention include crop plants (for example, cotton, corn, alfalfa, sunflower, Brassica, soybean, cotton, safflower, peanut, sorghum, wheat, millet, tobacco, etc.), such as corn and soybean plants.
- Turfgrasses include, but are not limited to: annual bluegrass (Poa annu ⁇ ); annual ryegrass (Lolium multiflorum); Canada bluegrass (Poa compressa); Chewings fescue (Festuca rubra); colonial bentgrass (Agrostis tenuis); creeping bentgrass (Agrostis palustris); crested wheatgrass (Agropyron desertorum); fairway wheatgrass (Agropyron cristatum); hard fescue (Festuca longifolia); Kentucky bluegrass (Poa pratensis); orchardgrass (Dactylis glomerata); perennial ryegrass (Lolium perenne); red fescue (Festuca rubra); redtop (A
- Augustine grass (Stenotaphrum secundatum); zoysia grass (Zoysia spp.); Bahia grass (Paspalum notatum); carpet grass (Axonopus affinis); centipede grass (Eremochloa ophiuroides); kikuyu grass (Pennisetum clandesinum); seashore paspalum (Paspalum vaginatum); blue gramma (Bouteloua gracilis); buffalo grass (Buchloe dactyloids); sideoats gramma (Bouteloua curtipendula).
- Plants of interest include grain plants that provide seeds of interest, oil-seed plants, and leguminous plants.
- Seeds of interest include grain seeds, such as corn, wheat, barley, rice, sorghum, rye, millet, etc.
- Oil-seed plants include cotton, soybean, safflower, sunflower, Brassica, maize, alfalfa, palm, coconut, flax, castor, olive etc.
- Leguminous plants include beans and peas. Beans include guar, locust bean, fenugreek, soybean, garden beans, cowpea, mungbean, lima bean, fava bean, lentils, chickpea, etc.
- Preferred plants contemplated herein include cotton, sweet corn, tomato, tobacco, piniento, potato, sunflower, citrus, plums, sorghum, leeks, soybean, alfalfa, beans, pidgeon peas, chick peas, artichokes, curcurbits, lettuce, Dianthus, geraniums, cape gooseberry, maize, flax and linseed, lupins, broad beans, garden peas, peanuts, canola, snapdragons, cherry, sunflower, pot marigolds, Helichrysum, wheat, barley, oats, triticale, carrots, onions, orchids, roses and petunias.
- the embodiments of the present invention may be effective against a variety of pests.
- pests include, but are not limited to, insects, fungi, bacteria, nematodes, acarids, protozoan pathogens, animal-parasitic liver flukes, and the like.
- Pests of particular interest are insect pests, particularly insect pests that cause significant damage to agricultural plants.
- insect pests refers to insects and other similar pests such as, for example, those of the order Acari including, but not limited to, mites and ticks.
- Insect pests of the present invention include, but are not limited to, insects of the order Lepidoptera, e.g.
- the embodiments of the present invention may be effective against insect pests, including but not limited to insects selected from the orders Diptera, Hymenoptera, Lepidoptera, Mallophaga, Homoptera, Hemiptera, Orthroptera, Thysanoptera, Dermaptera, Isoptera, Anoplura, Siphonaptera, Trichoptera, Coleoptera, etc., particularly Lepidoptera.
- insects selected from the orders Diptera, Hymenoptera, Lepidoptera, Mallophaga, Homoptera, Hemiptera, Orthroptera, Thysanoptera, Dermaptera, Isoptera, Anoplura, Siphonaptera, Trichoptera, Coleoptera, etc., particularly Lepidoptera.
- Insect pests of the invention for the major crops include, but are not limited to: Maize: Ostrinia nubilalis, European corn borer; Agrotis ipsilon, black cutworm; Helicoverpa zeae, corn earworm; Spodoptera frugiperda, fall armyworm; Diatraea grandiosella, southwestern corn borer; Elasmopalpus lignosellus, lesser cornstalk borer; Diatraea saccharalis, surgarcane borer; western corn rootworm, e.g., Diabrotica virgifera virgifera; northern corn rootworm, e.g., Diabrotica longicornis barberi; southern corn rootworm, e.g., Diabrotica undecimpunctata howardi; Melanotus spp., wireworms; Cyclocephala borealis, northern masked chafer (white grub); Cyclocephala immaculata, southern masked cha
- embodiments of the present invention may be effective against Hemiptera such as Lygus hesperus, Lygus lineolaris, Lygus pratensis, Lygus rugulipennis Popp, Lygus pabulinus, Calocoris norvegicus, Orthops compestris, Plesiocoris rugicollis, Cyrtopeltis modestus, Cyrtopeltis notatus, Spanagonicus albofasciatus, Diaphnocoris chlorinonis, Labopidicola allii, Pseudatomoscelis seriatus, Adelphocoris rapidus, Poecilocapsus lineatus, Blissus leucopterus, Nysius ericae, Nysius raphanus, Euschistus servus, Nezara viridula, Eurygaster, Coreidae, Pyrrhocoridae, Tinidae, Blostomatidae
- Pests of interest also include Araecerus fasciculatus, coffee bean weevil; Acanthoscelides obtectus, bean weevil; Bruchus rufmanus, broadbean weevil; Bruchus pisorum, pea weevil; Zabrotes subfasciatus, Mexican bean weevil; Diabrotica balteata, banded cucumber beetle; Cerotoma trifurcata, bean leaf beetle; Diabrotica virgifera, Mexican corn rootworm; Epitrix cucumeris, potato flea beetle; Chaetocnema con ⁇ nis, sweet potato flea beetle; Hypera postica, alfalfa weevil; Anthonomus quadrigibbus, apple curculio; Sternechus paludatus, bean stalk weevil; Hypera brunnipennis, Egyptian alfalfa weevil; Sitophilus granaries, granary weevil; Crapo
- Nematodes include parasitic nematodes such as root-knot, cyst, and lesion nematodes, including Heterodera spp., Meloidogyne spp., and Globodera spp.; particularly members of the cyst nematodes, including, but not limited to, Heterodera glycines (soybean cyst nematode); Heterodera schachtii (beet cyst nematode); Heterodera avenae (cereal cyst nematode); and Globodera rostochiensis and Globodera pallida (potato cyst nematodes).
- Lesion nematodes include Pratylenchus spp.
- the present invention is directed to a pest management system for plants which is multi- faceted in the sense that it involves two or more pesticidal and/or pestistatic agents generally designed to exhibit a combined impact on plant pests.
- At least one agent is a serine proteinase inhibitor and least one agent is a non-serine proteinase inhibitor (i.e. it acts via a mechanism different to the inhibition of serine proteinase activity).
- the multi- faceted system may employ both agents simultaneously or sequentially. In either event, this is described as the agents operating in "combination”.
- one aspect of the present invention provides a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and wherein at least one other agent is a non-serine proteinase inhibitor, wherein said plant exhibits resistance or reduced susceptibility to a pest.
- at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and where
- the serine proteinase inhibitor is preferably from tobacco and may comprise in precursor form at least three monomers, or four monomers, or five monomers, or six monomers, or seven monomers, or eight monomers wherein at least one monomer inhibits trypsin and at least one monomer inhibits chymotrypsin.
- the term "precursor" as used herein is not intended to place any limitation on the utility of the precursor molecule itself or a requirement that the molecule first be processed into monomers before proteinase inhibitory activity is expressed.
- the precursor molecule has proteinase inhibitory activity and the present invention is directed to the precursor and to the individual monomers of the precursor.
- the proteinase inhibitor or its precursor is from Nicotiana alata (NaPI) as described in International Patent Application No. PCT/AU93/00659 [WO 94/13810] which is incorporated herein by reference.
- another aspect of the present invention provides a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is the NaPI precursor or a monomer thereof or a recombinant or derivative thereof and wherein at least one other agent is a non-serine proteinase inhibitor wherein said plant exhibits resistance or reduced susceptibility to a pest.
- the preferred at least one other agent is a toxin including an endotoxin such as derived from a microorganism or fungus.
- an endotoxin such as derived from a microorganism or fungus.
- Particularly useful examples include toxins derived from
- Reference to a toxin includes a peptide, polypeptide or protein exhibiting pesticidal or pestistatic activity but which does not inhibit solely a serine proteinase. It may inhibit a serine proteinase only if it also exhibits another mode of pesticidal or pestistatic activity.
- Particularly useful toxins are Bt-related toxins from B. thuringiensis such as the Cry family of endotoxins. Examples of these endotxins include Cry9, Cry2s,
- Cry9 family is used herein to refer to nucleotide or amino acid sequences which share a high degree of sequence identity or similarity to previously described wild type Cry9 or Cry9D sequences.
- Bt toxin or endotoxin is intended to include the broader class of Cry toxins found in various status of B. thuringiensis and includes such toxins, as CrylAc, Cryls, Cry2s and Cry3s. Examples of suitable toxins can be found in US Patent Application Nos. 2005/0138685, 2004/0016020 and 2004/0221333 which are each incorporated herein by reference.
- Suitable toxins include vegetative insecticidal protein (VIP) and a defensin.
- VIP vegetative insecticidal protein
- defensins are described in International Patent Application No. PCT/AU2004/000524 which is incorporated herein by reference.
- another aspect of the present invention contemplates a genetically modified plant or its progeny resulting from self-crossing, back-crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is a serine proteinase inhibitor or precursor thereof from the Solanaceae family wherein in precursor form, it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one monomer is a chymotrypsin inhibitor and wherein at least one other agent is a non-serine proteinase inhibitor, wherein said plant exhibits resistance or reduced susceptibility to a pest except and wherein at least one other agent is selected from the list comprising a Bt protein, a Cry9 family protein, a Cry2 family protein or Cry3 family protein, Cry IAC, a VIP and a defensin.
- the present invention is directed to a genetically modified plant or its progeny resulting from self crossing, back crossing or crossing with another plant, said plant comprising at least two pesticidal and/or pestistatic agents wherein at least one of said agents results from the genetic modification or crossing wherein at least one agent is NaPI precursor or a monomer thereof or a recombinant or derivative thereof and wherein at least one other agent is a non-serine proteinase inhibitor wherein said plant exhibits resistance or reduced susceptibility to a pest except wherein the least one other agent is selected from the list comprising a Bt protein including a Cry family protein, a VIP and a defensin.
- Reference herein to NaPI, proteinase inhibitors, Bt, Cry9, CrylAc, Cryls, Cry2s, Cry3s, VIP and defensin and the like include derivatives and fragments and otherwise modified forms.
- modified forms include mutagenized forms such as mutants with altered substrate specificity or which exhibit greater stability or which direct the agent to a plant cell organelle such as a vacuole.
- Serine Protease inhibitors such as NaPIs are known to act directly on the gut proteases of the digestive system of lepidopteran pests.
- a complex is formed between the specific inhibitor (either a trypsin or chymotrypsin inhibitor) and the protease (either a trypsin or chymotrypsin). These complexes are then excreted in the frass. The effect is to diminish the digestive capacity of the insect for protein and to deplete the protein reserves of the insect larvae.
- Protease inhibitors may also affect the innate immunity system of insects. For this effect to occur, the inhibitors must move into the haemolymph where they can complex with the proteases in the cascades of the innate immunity system. Normally there is very restricted access of foreign molecules to this fundamental immune system of insects.
- An aspect of our invention is to provide conditions which allow enhanced access of PIs to the innate immunity system.
- the present invention extends to parts of the genetically modified plants or, their progeny which include seeds, pollen, leaves, flowers, stigmas, stems, roots, root hairs, bark and apical meristems. Parts also include root stock or other form of commercially exploitable plant parts.
- the present invention further provides nucleic acid molecules encoding the pesticidal or pestistatic agents.
- the nucleic acid molecules may be in a single construct, in multiple constructs or may be in situ in a plant cell genome. Conveniently, the nucleic acid molecules form a genetic composition.
- the nucleic acid molecules may also be part of beads such as beads used in biolistic DNA transfer.
- another aspect of the present invention provides a genetic composition comprising at least one construct encoding a serine proteinase inhibitor or a precursor form thereof wherein in precursor form it comprises at least three monomers wherein at least one monomer is a trypsin inhibitor and at least one other monomer inhibits chymotrypsin and at least one construct encodes a non-serine proteinase inhibitor.
- nucleic acid molecules are operably linked to one or more promoters.
- the promoter may regulate the expression of the nucleotide sequence encoding the agent, or differentially with respect to cell, the tissue or organ in which expression occurs or, with respect to the developmental stage at which expression occurs, or in response to external stimuli such as physiological stresses, or pathogens, or metal ions, amongst others.
- the promoter is capable of regulating expression of a nucleic acid molecule in a plant cell, tissue or organ, at least during the period of time over which the nucleotide sequence encoding the agent is expressed therein.
- Plant-operable promoters are particularly preferred for use in the constructs of the present invention.
- suitable promoters include pCaMV 35S (Fang et al, Plant Cell 7:141-150, 1989), PGELl (Hajdukiewicz et al, Plant MoI Biol 25:989-994, 1994), class III chitinase (Samac and Shah, Plant Cell 3:1063-1072, 1991), pin2 (Keil et al, EMBO J 5:1323-1330, 1989), PEP carboxylase (Pathirana et al, Plant J 72:293-304, 1997; MAP kinase (Schoenbeck et al, Molec Plant-Microbe Interact, 1999), MSV (Legavre et al, In: Vth International Congress of Plant Molecular Biology, Singapore, 1997), pltp (Hsu et al, Plant Sci 143:63-70, 1999), pmpi (Cordero et
- the terms "in operable connection with” or “operably under the control” or similar shall be taken to indicate that expression of the nucleic acid molecule is under the control of the promoter sequence with which it is spatially connected; in a cell, tissue, organ or whole plant.
- a number of promoters can be used in the practice of the invention.
- the promoters can be selected based on the desired outcome.
- the nucleic acids can be combined with constitutive, tissue-preferred, inducible, or other promoters for expression in the host organism.
- Suitable constitutive promoters for use in a plant host cell include, for example, the core promoter of the Rsyn7 promoter and other constitutive promoters disclosed in WO 99/43838 and U.S. Pat. No.
- wound-inducible promoters are wound-inducible promoters.
- Such wound- inducible promoters may respond to damage caused by insect feeding, and include potato proteinase inhibitor (pin II) gene (Ryan Ann Rev Phytop ⁇ th 25:425-449, 1990; Duan et ⁇ l, Nature Biotechnology 14:494-498, 1996); wunl and wun2, U.S. Pat. No.
- pathogen-inducible promoters may be employed in the methods and nucleotide constructs of the present invention.
- pathogen-inducible promoters include those from pathogenesis-related proteins (PR proteins), which are induced following infection by a pathogen; e.g., PR proteins, SAR proteins, beta-l,3-glucanase, chitinase, etc. See, for example, Redolfi et al, Meth J Plant Pathol 59:245-254, 1983; Uknes et al, Plant Cell 4:645-656, 1992; and Van Loon Plant MoI Virol 4:111-116, 1985. See also WO 99/43819, herein incorporated by reference.
- promoters that are expressed locally at or near the site of pathogen infection. See, for example, Marineau et al, Plant MoI Biol 9:335-342, 1987; Matton et al, Molecular Plant-Microbe Interactions 2:325-331, 1989; Somsisch et al, Proc Natl Acad Sci USA 53:2427-2430, 1986; Somsisch et al, MoI Gen Genet 2:93-98, 1988; and Yang Proc Natl Acad Sci USA 95:14972-14977, 1996.
- Chemical-regulated promoters can be used to modulate the expression of a gene in a plant through the application of an exogenous chemical regulator.
- the promoter may be a chemical-inducible promoter, where application of the chemical induces gene expression, or a chemical-repressible promoter, where application of the chemical represses gene expression.
- Chemical-inducible promoters are known in the art and include, but are not limited to, the maize In2-2 promoter, which is activated by benzenesulfonamide herbicide safeners, the maize GST promoter, which is activated by hydrophobic electrophilic compounds that are used as pre-emergent herbicides, and the tobacco PR- Ia promoter, which is activated by salicylic acid.
- promoters of interest include steroid-responsive promoters (see, for example, the glucocorticoid-inducible promoter in Schena et al, Proc Natl Acad Sci USA 55:10421- 10425, 1991 and McNellis et al, Plant J 14(2) :2A1 -251, 1998 and tetracycline-inducible and tetracycline-repressible promoters (see, for example, Gatz et al, MoI Gen Genet 227:229-237, 1991, and U.S. Pat. Nos. 5,814,618 and 5,789,156), herein incorporated by reference.
- Tissue-preferred promoters can be utilized to target enhanced pesticidal protein expression within a particular plant tissue.
- Tissue-preferred promoters include those discussed in Yamamoto et al, Plant J 12 (2) -.255-265, 1997; Kawamata et al, Plant Cell Physiol 38(7):792-803, 1997; Hansen et al, MoI Gen Genet 254(3) :337-343, 1997; Russell et al, Transgenic Res 6(2): ⁇ 57- ⁇ 68, 1997; Rinehart et al, Plant Physiol 772(3J:1331-1341, 1996; Van Camp et al, Plant Physiol 112(2):525-535, 1996; Canevascini et al, Plant Physiol 112(2):5 ⁇ 3-524, 1996; Yamamoto et al, Plant Cell Physiol 35(5):773-778, 1994; Lam Results Probl Cell Differ 20:181-196, 1994; Orozco et al, Plant MoI Biol 23
- Leaf-preferred promoters are known in the art. See, for example, Yamamoto et al, 1997 supra; Kwon et al, Plant Physiol 105:357-67, 1994; Yamamoto et al, 1994 supra; Gotor et al, Plant J 5:509-18, 1993; Orozco et al, 1993 supra and Matsuoka et al, 1993 supra.
- Root-preferred or root-specific promoters are known and can be selected from the many available from the literature or isolated de novo from various compatible species. See, for example, Hire et al, Plant MoI Biol 20(2) -.207-218, 1992 (soybean root-specific glutamine synthetase gene); Keller and Baumgartner Plant Cell 3(7 ⁇ :1051-1061, 1991 (root-specific control element in the GRP 1.8 gene of French bean); Sanger et al, Plant MoI Biol
- the promoters of these genes were linked to a ⁇ -glucuronidase reporter gene and introduced into both the nonlegume Nicotiana tabacum and the legume Lotus corniculatus, and in both instances root-specific promoter activity was preserved. Promoters of rolC and rolD root-inducing genes of Agrobacterium rhizogenes may also be used (see Limerick Plant Science 79(l):69-76).
- VfENOD-GRP3 gene promoter Kuster et al, Plant MoI Biol 29 (4) -.759-772, 1995
- rolb promoter Capana et al, Plant MoI Biol 25(4):68l-691, 1994. See also U.S. Pat. Nos. 5,837,876; 5,750,386; 5,633,363; 5,459,252; 5,401,836; 5,110,732; and 5,023,179.
- seed-preferred promoters include both “seed-specific” promoters (those promoters active during seed development such as promoters of seed storage proteins) as well as “seed- germinating” promoters (those promoters active during seed germination). See Thompson et al, BioEssays 10:108, 1989, herein incorporated by reference.
- seed-preferred promoters include, but are not limited to, Ciml (cytokinin-induced message); cZ19Bl (maize 19 kDa zein); and milps (myo-inositol-1 -phosphate synthase) (see U.S. Pat. No. 6,225,529, herein incorporated by reference).
- seed-specific promoters include, but are not limited to, bean ⁇ -phaseolin, napin, ⁇ -conglycinin, soybean lectin, cruciferin, and the like.
- seed-specific promoters include, but are not limited to, maize 15 kDa zein, 22 kDa zein, 27 kDa zein, g-zein, waxy, shrunken 1, shrunken 2, globulin 1, etc. See also WO 00/12733, where seed-preferred promoters from endl and end2 genes are disclosed; herein incorporated by reference.
- a promoter that has "preferred" expression in a particular tissue is expressed in that tissue to a greater degree than in at least one other plant tissue. Some tissue-preferred promoters show expression almost exclusively in the particular tissue.
- weak promoters will be used.
- the term "weak promoter” as used herein refers to a promoter that drives expression of a coding sequence at a low level. By low level expression at levels of about 1/1000 transcripts to about 1/100,000 transcripts to about 1/500,000 transcripts is intended. Alternatively, it is recognized that the term “weak promoters” also encompasses promoters that drive expression in only a few cells and not in others to give a total low level of expression. Where a promoter drives expression at unacceptably high levels, portions of the promoter sequence can be deleted or modified to decrease expression levels.
- Such weak constitutive promoters include, for example the core promoter of the Rsyn7 promoter (WO 99/43838 and U.S. Pat. No. 6,072,050), the core 35 S CaMV promoter, and the like.
- Other constitutive promoters include, for example, those disclosed in U.S. Pat. Nos. 5,608,149; 5,608,144; 5,604,121; 5,569,597; 5,466,785; 5,399,680; 5,268,463; 5,608,142; and 6,177,611; herein incorporated by reference.
- the construct preferably contains additional regulatory elements for efficient transcription, for example, a transcription termination (or terminators) sequence.
- Terminator refers to a DNA sequence at the end of a transcriptional unit which signals termination of transcription. Terminators are 3 '-non-translated DNA sequences generally containing a polyadenylation signal, which facilitates the addition of polyadenylate sequences to the 3 '-end of a primary transcript. Terminators active in plant cells are known and described in the literature. They may be isolated from bacteria, fungi, viruses, animals and/or plants or synthesized de novo.
- the terminator may be any termination sequence which is operable in the cells, tissues or organs in which it is intended to be used.
- terminators particularly suitable for use in the synthetic genes of the present invention include the SV40 polyadenylation signal, the HSV TK polyadenylation signal, the CYCl terminator, ADH terminator, SPA terminator, nopaline synthase (NOS) gene terminator of Agrobacterium tumefaciens, the terminator of the cauliflower mosaic virus (CaMV) 35S gene, the zein gene terminator from Zea mays, the Rubisco small subunit gene (SSU) gene terminator sequences, subclover stunt virus (SCSV) gene sequence terminators, any r/zo-independent E. coli terminator, or the lacZ alpha terminator, amongst others.
- SSU Rubisco small subunit gene
- SCSV subclover stunt virus
- the terminator is the SV40 polyadenylation signal or the HSV TK polyadenylation signal which are operable in animal cells, tissues and organs, octopine synthase (OCS) or nopaline synthase (NOS) terminator active in plant cells, tissue or organs, or the lacZ alpha terminator which is active in prokaryotic cells.
- OCS octopine synthase
- NOS nopaline synthase
- constructs described supra are capable of being modified further, for example, by the inclusion of marker nucleotide sequences encoding a detectable marker enzyme or a functional analogue or derivative thereof, to facilitate detection of the synthetic gene in a cell, tissue or organ in which it is expressed.
- the marker nucleotide sequences will be present in a translatable format and be expressed.
- transport sequences may be included to direct one or more agents to particular plant organnelles.
- the genetic manipulations required to perform the present invention may require the propagation of a genetic construct described herein or a derivative thereof in a prokaryotic cell such as an E. coli cell or a plant cell or an animal cell.
- the constructs of the present invention may be introduced to a suitable cell, tissue or organ without modification as linear DNA, optionally contained within a suitable carrier, such as a cell, virus particle or liposome, amongst others.
- a nucleic acid is inserted into a suitable vector or episome molecule, such as a bacteriophage vector, viral vector or a plasmid, cosmid or artificial chromosome vector which is capable of being maintained and/or replicated and/or expressed in the host cell, tissue or organ into which it is subsequently introduced.
- a suitable vector or episome molecule such as a bacteriophage vector, viral vector or a plasmid, cosmid or artificial chromosome vector which is capable of being maintained and/or replicated and/or expressed in the host cell, tissue or organ into which it is subsequently introduced.
- a further aspect of the present invention provides a genetic construct which at least comprises a genetic element encoding one or both pesticidal or pestistatic agents as herein described and one or more origins of replication and/or selectable marker gene sequences.
- an origin of replication or a selectable marker gene suitable for use in bacteria is physically-separated from those genetic sequences contained in the genetic construct which are intended to be expressed or transferred to a plant cell, or integrated into the genome of a plant cell.
- selectable marker gene includes any gene which confers a phenotype on a cell on which it is expressed to facilitate the identification and/or selection of cells which are transfected or transformed with a genetic construct of the invention or a derivative thereof.
- Suitable selectable marker genes contemplated herein include the ampicillin-resistance gene (Amp 1 ), tetracycline-resistance gene (Tc 1 ), bacterial kanamycin-resistance gene
- the zeocin resistance gene (Zeocin is a drug of the bleomycin family which is trade mark of InVitrogen Corporation), the AURI-C gene which confers resistance to the antibiotic aureobasidin A, phosphinothricin-resistance gene, neomycin phosphotransferase gen (nptl ⁇ ), hygromycin-resistance gene, ⁇ -glucuronidase (GUS) gene, chloramphenicol acetyltransferase (CAT) gene, green fluorescent protein-encoding gene or the luciferase gene, amongst others.
- the selectable marker gene is the nptll gene or Kan r gene or green fluorescent protein (GFP)-encoding gene.
- selectable marker genes useful in the performance of the present invention and the subject invention is not limited by the nature of the selectable marker gene.
- the present invention extends to all genetic constructs essentially as described herein, which include further genetic sequences intended for the maintenance and/or replication of said genetic construct in prokaryotes or eukaryotes and/or the integration of said genetic construct or a part thereof into the genome of a eukaryotic cell or organism.
- Standard methods may be used to introduce the constructs into the cell, tissue or organ, for example, liposome-mediated transfection or transformation, transformation of cells with attenuated virus particles or bacterial cells, cell mating, transformation or transfection procedures known to those skilled in the art.
- Additional means for introducing recombinant DNA into plant tissue or cells include, but are not limited to, transformation using CaCl 2 and variations thereof, direct DNA uptake into protoplasts, PEG-mediated uptake to protoplasts, microparticle bombardment, electroporation, microinjection of DNA, microparticle bombardment of tissue explant or cells, vacuum-infiltration of tissue with nucleic acid, or in the case of plants, T-DNA- mediated transfer from Agrobacterium to the plant tissue.
- a microparticle is propelled into a cell to produce a transformed cell.
- Any suitable ballistic cell transformation methodology and apparatus can be used in performing the present invention. Exemplary apparatus and procedures are disclosed by Stomp et al, (U.S. Patent No. 5,122,466) and Sanford and Wolf (U.S. Patent No. 4,945,050).
- the genetic construct may incorporate a plasmid capable of replicating in the cell to be transformed. Examples of microparticles suitable for use in such systems include 1 to 5 ⁇ m gold spheres.
- the DNA construct may be deposited on the microparticle by any suitable technique, such as by precipitation.
- the methods of the invention involve introducing a polypeptide or polynucleotide into a plant.
- "Introducing" is intended to mean presenting to the plant the polynucleotide or polypeptide in such a manner that the sequence gains access to the interior of a cell of the plant.
- the methods of the invention do not depend on a particular method for introducing a polynucleotide or polypeptide into a plant, only that the polynucleotide or polypeptides gains access to the interior of at least one cell of the plant.
- Methods for introducing polynucleotide or polypeptides into plants are known in the art including, but not limited to, stable transformation methods, transient transformation methods, and virus-mediated methods.
- “Stable transformation” is intended to mean that the nucleotide construct introduced into a plant integrates into the genome of the plant and is capable of being inherited by the progeny thereof.
- “Transient transformation” is intended to mean that a polynucleotide is introduced into the plant and does not integrate into the genome of the plant or a polypeptide is introduced into a plant.
- Transformation protocols as well as protocols for introducing nucleotide sequences into plants may vary depending on the type of plant or plant cell, i.e., monocot or dicot, targeted for transformation. Suitable methods of introducing nucleotide sequences into plant cells and subsequent insertion into the plant genome include microinjection (Crossway et al, Biotechniques 4:320-334, 1986), electroporation (Riggs et al, Proc Natl Acad Sci USA 83:5602-5606, 1986), Agrobacterium-mediated transformation (U.S. Pat. Nos.
- the genetic constructs described herein are adapted for integration into the genome of a cell in which it is expressed.
- Those skilled in the art will be aware that, in order to achieve integration of a genetic sequence or genetic construct into the genome of a host cell, certain additional genetic sequences may be required. In the case of plants, left and right border sequences from the T-DNA of the Agrobacterium tumefaciens Ti plasmid will generally be required.
- the present invention further extends to an isolated cell, tissue or organ comprising the constructs or parts thereof.
- the present invention extends further to regenerated tissues, organs and whole organisms derived from said cells, tissues and organs and to propagules and progeny thereof as well as seeds and other reproductive material.
- plants may be regenerated from transformed plant cells or tissues or organs on hormone-containing media and the regenerated plants may take a variety of forms, such as chimeras of transformed cells and non-transformed cells; clonal transformants (e.g. all cells transformed to contain the expression cassette); grafts of transformed and untransformed tissue (e.g. a transformed root stock grafted to an untransformed scion in citrus species).
- Transformed plants may be propagated by a variety of means, such as by clonal propagation or classical breeding techniques.
- first generation (or Tl) transformed plants may be selfed to give homozygous second generation (or T2) transformed plants, and the T2 plants further propagated through classical breeding techniques.
- the present invention contemplates any other DNA sequence differing in its codon usage but encoding the same protein or a similar protein with substantially the same pesticidal or pestistatic activity, can be constructed, depending on the particular purpose. It has been described in some prokaryotic and eucaryotic expression systems that changing the codon usage to that of the host cell is desired for gene expression in foreign hosts (Bennetzen & Hall, J Biol Chem 257:3026, 1982; Itakura, Science 198:1056-1063, 1977). Codon usage tables are available in the literature (Wada et al, Nucl Acids Res 18:2367-1411, 1990; Murray et al, Nucleic Acids Research 77:477-498, 1989) and in the major DNA sequence databases.
- DNA sequences can be constructed so that the same or substantially the same proteins are produced. It is evident that several DNA sequences can be devised once the amino acid sequence of the instant agents proteins of this invention. Such other DNA sequences include synthetic or semi-synthetic DNA sequences that have been changed in order to inactivate certain sites in the gene, e.g. by selectively inactivating certain cryptic regulatory or processing elements present in the native sequence, or by adapting the overall codon usage to that of a more related host organism, preferably that of the host organism in which expression is desired. Synthetic DNA sequences could also be made following the procedures described in EP 0 385 962, EP 0 618 967, or EP 0 682 115.
- the same plant host preferably a transgenic plant
- the other protein or protein complex which has a different mode of action, and a high toxicity to the same pest targeted by the first agent (e.g. serine proteinase inhibitor) when produced in a transgenic host, preferably a plant.
- the first agent e.g. serine proteinase inhibitor
- Suitable candidates to be combined with the serine proteinase inhibitor include the mature VIPlAa protein when combined with the mature VIP2Aa or VIP2Ab protein of PCT publication WO 96/10083 in case these VIP proteins have a different mode of action compared to the serine proteinase inhibitors; the corn rootworm toxins of Photorhabdus or Xenorhabdus spp., e.g., the insecticidal proteins of Photorhabdus luminescens W-14 (Guo et al, J Biol Chem 274:9836-9842, 1999); the CryET70 protein of WO 00/26378; the insecticidal proteins produced by Bt strains PS80JJ1, PS149B1 and PS167H2 as described in WO 97/40162, particularly the about 14 kD and about 44 kD proteins of Bt strain PS149B1; the Cry3Bb protein of U.S.
- protease inhibitors such as the N2 and Rl cysteine proteinase inhibitors of soybean (Zhao et al, Plant Physiol 777:1299- 1306, 1996) or oryzastatine such as rice cystatin (Genbank entry S49967), corn cystatin (Genbank entries D38130, D 10622, D63342) such as the corn cystatin expressed in plants as described by Me et al, Plant MoI Biol 30: 149- 157, 1996). Also included herein are all equivalents and variants, such as truncated proteins retaining insecticidal activity, of any of the above proteins.
- DNA of the encoding serine proteinase inhibitor genes of the subject invention can be ligated in suitable expression vectors and transformed in E. coli, and the clones can then be screened by conventional colony immunoprobing methods (French et al, Anal Biochem 156:417-423, 1986) for expression of the toxin with monoclonal or polyclonal antibodies raised against proteinase inhibitor.
- the DNA can be ligated in suitable Bt shuttle vectors (Lereclus et al, Bio/Technology 70:418, 1992) and transformed in a crystal minus Bt-mutant. The clones are then screened for production of ISP proteins (by SDS-PAGE, Western blot and/or insect assay).
- genes encoding the invention can be sequenced in a conventional manner (Maxam and
- a pesticidal or pestistatic composition of the subject invention can also be formulated in a conventional manner using the microorganisms transformed with the genes, or preferably their respective proteins or pesticidally or pestistatically effective portions thereof as an active ingredient, together with suitable carriers, diluents, emulsifiers and/or dispersants (e.g., as described by Bernhard and Utz, An Environmental Biopesticide: Theory and Practice 255-267, 1993).
- This pesticidal or pestistatic composition can be formulated as a wettable powder, pellets, granules or dust or as a liquid formulation with aqueous or nonaqueous solvents as a foam, gel, suspension, concentrate, etc.
- Known microorganisms include cells of Pseudomonas or other bacteria that serve to encapsulate the proteins in a stable environment prior to application to the insects.
- a product comprising the agents described herein as a combined preparation for simultaneous, separate or sequential use to protect corn plants against corn rootworms, particularly such product is an insecticidal composition or a transgenic corn plant.
- a method for controlling pests in accordance with the subject invention can comprise applying (e.g., spraying), to a locus (area) to be protected, an pesticidal or pestistatic effective amount of the agents or host cells transformed with the gene of the subject invention.
- the locus to be protected can include, for example, the habitat of the insect pests or growing vegetation or an area where vegetation is to be grown.
- cells of the recombinant hosts expressing the agents can be grown in a conventional manner on a suitable culture medium and the protein can then be obtained from the medium using conventional means.
- the agent can then be separated and purified by standard techniques such as chromatography, extraction, electrophoresis, or the like.
- the protease-resistant toxin form can then be obtained by protease, e.g. cysteine or serine protease, digestion of the protein.
- While the invention does not depend on a particular biological mechanism for increasing the resistance of a plant to a plant pest, expression of the nucleotide sequences of the invention in a plant can result in the production of the pesticidal or pestistatic proteins of the invention and in an increase in the resistance of the plant to a plant pest.
- the plants of the invention find use in agriculture in methods for impacting plant pests.
- Certain embodiments of the invention provide transformed crop plants, such as, for example, cotton plants, which find use in methods for impacting insect pests of the plant.
- a “subject plant or plant cell” is one in which genetic alteration, such as transformation, has been effected as to a gene of interest, or is a plant or plant cell which is descended from a plant or cell so altered and which comprises the alteration.
- a “control” or “control plant” or “control plant cell” provides a reference point for measuring changes in phenotype of the subject plant or plant cell.
- a control plant or plant cell may comprise, for example: (a) a wild-type plant or cell, i.e., of the same genotype as the starting material for the genetic alteration which resulted in the subject plant or cell; (b) a plant or plant cell of the same genotype as the starting material but which has been transformed with a null construct (i.e., with a construct which has no known effect on the trait of interest, such as a construct comprising a marker gene); (c) a plant or plant cell which is a non-transformed segregant among progeny of a subject plant or plant cell; (d) a plant or plant cell genetically identical to the subject plant or plant cell but which is not exposed to conditions or stimuli that would induce expression of the gene of interest; or (e) the subject plant or plant cell itself, under conditions in which the gene of interest is not expressed.
- a wild-type plant or cell i.e., of the same genotype as the starting material for the genetic alteration which resulted in the subject plant or cell
- the Cry9 family proteins of the invention may be altered in various ways including amino acid substitutions, deletions, truncations, and insertions. Methods for such manipulations are generally known in the art.
- amino acid sequence variants of the pesticidal or pestistatic proteins can be prepared by introducing mutations into a synthetic nucleic acid (e.g., DNA molecule). Methods for mutagenesis and nucleic acid alterations are well known in the art. For example, designed changes can be introduced using an oligonucleotide-mediated site-directed mutagenesis technique.
- the mutagenized Cry9 family nucleotide sequences of the invention may be modified so as to change about 1, 2, 3, 4, 5, 6, 8, 10, 12 or more of the amino acids present in the primary sequence of the encoded polypeptide.
- even more changes from the native sequence may be introduced such that the encoded protein may have at least about 1% or 2%, or about 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, or even about 13%, 14%, 15%, 16%, 17%, 18%, 19%, or 20%, 21%, 22%, 23%, 24%, or 25%, 30%, 35%, or 40% or more of the codons altered, or otherwise modified compared to the corresponding wild- type protein.
- the encoded protein may have at least about 1% or 2%, or about 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, or even about 13%, 14%, 15%, 16%, 17%, 18%, 19%, or 20%, 21%, 22%, 23%, 24%, or 25%, 30%, 35%, or 40% or more additional codons compared to the corresponding wild-type protein.
- the mutagenized Cry9 family nucleotide sequences of the present invention are intended to encompass biologically functional, equivalent peptides which have pesticidal activity, such as an improved pesticidal activity as determined by antifeedant properties against fall armyworm larvae. Such sequences may arise as a consequence of codon redundancy and functional equivalency that are known to occur naturally within nucleic acid sequences and the proteins thus encoded.
- amino acid additions and/or substitutions are generally based on the relative similarity of the amino acid side-chain substituents, for example, their hydrophobicity, charge, size, and the like.
- Exemplary amino acid substitution groups that take various of the foregoing characteristics into consideration are well known to those of skill in the art and include: arginine and lysine; glutamate and aspartate; serine and threonine; glutamine and asparagine; and valine, leucine, and isoleucine.
- the nucleic acid sequences of the present invention can be stacked with any combination of polynucleotide sequences of interest in order to create plants with a desired phenotype.
- the polynucleotides of the present invention may be stacked with any other polynucleotides encoding polypeptides having pesticidal and/or insecticidal activity, such as other B. thuringiensis toxic proteins (described in U.S. Pat. Nos. 5,366,892; 5,747,450; 5,736,514; 5,723,756; 5,593,881; and Geiser et al, Gene 45:109, 1986), pentin (described in U.S. Pat. No. 5,981,722) and the like.
- the combinations generated can also include multiple copies of any one of the polynucleotides of interest.
- the polynucleotides of the present invention can also be stacked with any other gene or combination of genes to produce plants with a variety of desired trait combinations including but not limited to traits desirable for animal feed such as high oil genes (e.g., U.S. Pat. No. 6,232,529); balanced amino acids (e.g. hordothionins (U.S. Pat. Nos.
- the polynucleotides of the present invention can also be stacked with traits desirable for disease or herbicide resistance (e.g., fumonisin detoxification genes (U.S. Pat. No. 5,792,931); avirulence and disease resistance genes (Jones et al, Science 266:789, 1994; Martin et al, Science 262:1432, 1993; and Mindrinos et al, Cell 7S:1089, 1994); acetolactate synthase (ALS) mutants that lead to herbicide resistance such as the S4 and/or Hra mutations; inhibitors of glutamine synthase such as phosphinothricin or basta (e.g., bar gene); and glyphosate resistance (EPSPS gene and GAT gene as disclosed in U.S.
- EPSPS gene and GAT gene as disclosed in U.S.
- PHAs polyhydroxyalkanoates
- agronomic traits such as male sterility (e.g., see U.S. Pat. No. 5,583,210), stalk strength, flowering time, or transformation technology traits such as cell cycle regulation or gene targeting (e.g. WO 99/61619; WO 00/17364; WO 99/25821), the disclosures of which are herein incorporated by reference.
- stacked combinations can be created by any method including but not limited to cross breeding plants by any conventional or TopCrosse methodology, or genetic transformation.
- the traits are stacked by genetically transforming the plants, the polynucleotide sequences of interest can be combined at any time and in any order.
- a transgenic plant comprising one or more desired traits can be used as the target to introduce further traits by subsequent transformation.
- the traits can be introduced simultaneously in a co-transformation protocol with the polynucleotides of interest provided by any combination of transformation cassettes.
- the two sequences can be contained in separate transformation cassettes (trans) or contained on the same transformation cassette (cis). Expression of the sequences can be driven by the same promoter or by different promoters.
- a transformation cassette that will suppress the expression of the polynucleotide of interest. This may be combined with any combination of other suppression cassettes or overexpression cassettes to generate the desired combination of traits in the plant. It is further recognized that polynucleotide sequences can be stacked at a desired genomic location using a site-specific recombination system. See, for example, WO99/25821, WO99/25854, WO99/25840, WO99/25855, and WO99/25853, all of which are herein incorporated by reference.
- compositions of the invention find use in protecting plants, seeds, and plant products in a variety of ways.
- the compositions can be used in a method that involves placing an effective amount of the pesticidal or pestistatic composition in the environment of the pest by a procedure selected from the group consisting of spraying, dusting, broadcasting, or seed coating.
- a protectant coating comprising herbicides, insecticides, fungicides, bactericides, nematicides, molluscicides, or mixtures of several of these preparations, if desired together with further carriers, surfactants, or application-promoting adjuvants customarily employed in the art of formulation to provide protection against damage caused by bacterial, fungal, or animal pests.
- the protectant coating may be applied to the seeds either by impregnating the tubers or grains with a liquid formulation or by coating them with a combined wet or dry formulation.
- other methods of application to plants are possible, e.g., treatment directed at the buds or the fruit.
- the plant seed of the invention comprising the nucleotide sequences encoding the agents may be treated with a seed protectant coating comprising a seed treatment compound, such as, for example, captan, carboxin, thiram, methalaxyl, pirimiphos-methyl, and others that are commonly used in seed treatment.
- a seed protectant coating comprising a pesticidal composition of the invention is used alone or in combination with one of the seed protectant coatings customarily used in seed treatment.
- a composition includes whole organisms, cells, spore(s), pesticidal or pestistatic protein(s), pesticidal or pestistatic component(s), pest-impacting component(s), mutant(s), living or dead cells and cell components, including mixtures of living and dead cells and cell components, and including broken cells and cell components or an isolated pesticidal or pestistatic protein can be formulated with an acceptable carrier into a pesticidal composition(s) that is, for example, a suspension, a solution, an emulsion, a dusting powder, a dispersible granule, a wettable powder, and an emulsifiable concentrate, an aerosol, an impregnated granule, an adjuvant, a coatable paste, and also encapsulations in, for example, polymer substances.
- a pesticidal composition(s) that is, for example, a suspension, a solution, an emulsion, a dusting powder, a dispersible granule, a
- compositions disclosed above may be obtained by the addition of a surface-active agent, an inert carrier, a preservative, a humectant, a feeding stimulant, an attractant, an encapsulating agent, a binder, an emulsifier, a dye, a UV protectant, a buffer, a flow agent or fertilizers, micronutrient donors, or other preparations that influence plant growth.
- One or more agrochemicals including, but not limited to, herbicides, insecticides, fungicides, bactericides, nematicides, molluscicides, acaracides, plant growth regulators, harvest aids, and fertilizers, can be combined with carriers, surfactants or adjuvants customarily employed in the art of formulation or other components to facilitate product handling and application for particular target pests.
- Suitable carriers and adjuvants can be solid or liquid and correspond to the substances ordinarily employed in formulation technology, e.g., natural or regenerated mineral substances, solvents, dispersants, wetting agents, tackif ⁇ ers, binders, or fertilizers.
- the active ingredients of the present invention are normally applied in the form of compositions and can be applied to the crop area, plant, or seed to be treated.
- the compositions of the present invention may be applied to grain in preparation for or during storage in a grain bin or silo, etc.
- the compositions of the present invention may be applied simultaneously or in succession with other compounds.
- Methods of applying an active ingredient of the present invention or an agrochemical composition of the present invention that contains at least one of the pesticidal proteins produced by the bacterial strains of the present invention include, but are not limited to, foliar application, seed coating, and soil application. The number of applications and the rate of application depend on the intensity of infestation by the corresponding pest.
- Suitable surface-active agents include, but are not limited to, anionic compounds such as a carboxylate of, for example, a metal; a carboxylate of a long chain fatty acid; an N- acylsarcosinate; mono or di-esters of phosphoric acid with fatty alcohol ethoxylates or salts of such esters; fatty alcohol sulfates such as sodium dodecyl sulfate, sodium octadecyl sulfate or sodium cetyl sulfate; ethoxylated fatty alcohol sulfates; ethoxylated alkylphenol sulfates; lignin sulfonates; petroleum sulfonates; alkyl aryl sulfonates such as alkyl- benzene sulfonates or lower alkylnaphtalene sulfonates, e.g., butyl-naphthalene sulfonate
- Non-ionic agents include condensation products of fatty acid esters, fatty alcohols, fatty acid amides or fatty-alkyl- or alkenyl-substituted phenols with ethylene oxide, fatty esters of polyhydric alcohol ethers, e.g., sorbitan fatty acid esters, condensation products of such esters with ethylene oxide, e.g., polyoxyethylene sorbitar fatty acid esters, block copolymers of ethylene oxide and propylene oxide, acetylenic glycols such as 2,4,7,9-tetraethyl-5-decyn-4,7-diol, or ethoxylated acetylenic glycols.
- a cationic surface-active agent examples include, for instance, an aliphatic mono-, di-, or polyamine such as an acetate, naphthenate or oleate; or oxygen-containing amine such as an amine oxide of polyoxyethylene alkylamine; an amide-linked amine prepared by the condensation of a carboxylic acid with a di- or polyamine; or a quaternary ammonium salt.
- inert materials include but are not limited to inorganic minerals such as kaolin, phyllosilicates, carbonates, sulfates, phosphates, or botanical materials such as cork, powdered corncobs, peanut hulls, rice hulls, and walnut shells.
- the compositions of the present invention can be in a suitable form for direct application or as a concentrate of primary composition that requires dilution with a suitable quantity of water or other diluant before application.
- the pesticidal concentration will vary depending upon the nature of the particular formulation, specifically, whether it is a concentrate or to be used directly.
- the composition contains 1 to 98% of a solid or liquid inert carrier, and 0 to 50% or 0.1 to 50% of a surfactant.
- These compositions will be administered at the labeled rate for the commercial product, for example, about 0.01 lb-5.0 Ib. per acre when in dry form and at about 0.01 pts.-10 pts. per acre when in
- Insect pests may be tested for pesticidal or pestistatic activity of compositions of the instant invention in early developmental stages, e.g., as larvae or other immature forms.
- the insects may be reared in total darkness at from about 2O 0 C. to about 3O 0 C. and from about 30% to about 70% relative humidity.
- Bioassays may be performed as described in Czapla and Lang J Econ Entomol &?f ⁇ 5J:2480-2485, 1990. Methods of rearing insect larvae and performing bioassays are well known to one of ordinary skill in the art.
- bioassay techniques are known to one skilled in the art. General procedures include addition of the experimental compound or organism to the diet source in an enclosed container. Pesticidal activity can be measured by, but is not limited to, changes in mortality, weight loss, attraction, repellency and other behavioral and physical changes after feeding and exposure for an appropriate length of time. Bioassays described herein can be used with any feeding insect pest in the larval or adult stage.
- a bioassay was developed based on feeding larvae of H. armigera on cotton leaves homozygous for NaPI and coated with varying concentrations of CrylAc.
- the NaPI leaves were specifically selected to give a small reduction in weight of the larvae. (In previous bioassays, without CrylAc, leaves have been used which give a greater effect on larval growth and development.)
- the leaves were cut into discs using a hole puncher and coated with CrylAc solutions by immersing in the test solution for 5 minutes.
- the discs were removed from the solution with tweezers and then air dried on plastic mesh (approx. 30 min). When there was no visible moisture on the leaf disc surface, the discs were transferred to wells of a 24 well plate.
- the wells contained filter paper moistened with water. Untransformed leaf material of cv Coker was used in control experiments.
- H. armigera eggs (supplied by Department of Primary Industry & Fisheries, Indooroopilly, Queensland, Australia) were delivered by air freight to the laboratory and incubated (18- 2O 0 C depending on developmental stage) to the brown egg stage (pre hatching). Eggs were suspended in polyacrylate (Aquakeep polyacrylate, 1 mg/ml H 2 O) and one egg placed in each well containing a leaf disc. Single eggs were then transferred to individual wells.
- polyacrylate Aquakeep polyacrylate, 1 mg/ml H 2 O
- the concentration of activated Cry IAc protein was estimated as 2.5 mg/ml on the basis of 50% starting material being Cry IAc, and 50% of this being the final activated material.
- the egg hatch was 70-100%; 12 eggs per test (1 egg/well). The mass of surviving larvae is shown in Figure 1. There was insignificant mortality.
- This experiment was designed to achieve mortality by using higher concentrations of CryIAc. Higher numbers of eggs were used. For Day 1, the third fully expanded leaf was used. For Day 4, additions of leaf material of the second fully expanded leaf was used. Experiment duration was 6 days.
- the egg hatch was 50-83%; 40 eggs per test (1 egg/well).
- the mass of surviving larvae is shown in Figure 2.
- the mortality is shown in Figure 3.
- This experiment is essentially the same as experiment 1 except that the concentrations of CryIAc are increased over the range 50 to 250 ug/ml. These concentrations result in significant mortality, and thus the data presented refers to a subset of the original sample that have survived at each CryIAc concentration.
- the difference in mass between the larvae feeding on Coker or NaPI leaves is essentially the same at each concentration of CryIAc over the range 50-250 ug/ml.
- the aim of this experiment was to determine the effect of Bt toxin (Cry IAc) and NaPI on 3 rd to 4 th instar H. armigera larvae.
- Larvae (48) were grown for 11 days on cotton leaves cv Coker before being transferred to new plates containing fresh leaf discs. The 48 larvae were separated into 4 treatments of 12 larvae.
- the larvae were grown for a further 20 hours at 25 0 C.
- Larval weight was recorded at days 7, 11 and 12.
- Coker leaves at positions 3, 4 and 5 were used for the first 11 days. The leaves were harvested, cut into discs and pooled before they were added to the wells. Only leaves from position 2 or 3 were used for the treatments. Results
Abstract
Description
Claims
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BRPI0612634A BRPI0612634A2 (en) | 2005-07-08 | 2006-07-06 | genetically modified plant or progeny, pest monitoring control system and pesticide or pestistatic composition |
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CA2614353A1 (en) | 2007-01-18 |
BRPI0612634A2 (en) | 2017-06-20 |
AU2006269808A1 (en) | 2007-01-18 |
EP1909559A1 (en) | 2008-04-16 |
EP1909559A4 (en) | 2009-01-21 |
CN101257792A (en) | 2008-09-03 |
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