WO2006128120A2 - Novel lapachone compounds and methods of use thereof - Google Patents

Novel lapachone compounds and methods of use thereof Download PDF

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Publication number
WO2006128120A2
WO2006128120A2 PCT/US2006/020780 US2006020780W WO2006128120A2 WO 2006128120 A2 WO2006128120 A2 WO 2006128120A2 US 2006020780 W US2006020780 W US 2006020780W WO 2006128120 A2 WO2006128120 A2 WO 2006128120A2
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substituted
unsubstituted
compound
heterocycle
phenyl
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PCT/US2006/020780
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French (fr)
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WO2006128120A3 (en
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Mark Ashwell
Manish Tandon
Jean-Marc Lapierre
Syed Ali
Yanbin Liu
Chiang J. Li
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Arqule, Inc.
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Publication of WO2006128120A2 publication Critical patent/WO2006128120A2/en
Publication of WO2006128120A3 publication Critical patent/WO2006128120A3/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D491/00Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
    • C07D491/02Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
    • C07D491/10Spiro-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D327/00Heterocyclic compounds containing rings having oxygen and sulfur atoms as the only ring hetero atoms
    • C07D327/02Heterocyclic compounds containing rings having oxygen and sulfur atoms as the only ring hetero atoms one oxygen atom and one sulfur atom
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D327/00Heterocyclic compounds containing rings having oxygen and sulfur atoms as the only ring hetero atoms
    • C07D327/02Heterocyclic compounds containing rings having oxygen and sulfur atoms as the only ring hetero atoms one oxygen atom and one sulfur atom
    • C07D327/06Six-membered rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D411/00Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms
    • C07D411/02Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms containing two hetero rings
    • C07D411/06Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D411/00Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms
    • C07D411/02Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms containing two hetero rings
    • C07D411/12Heterocyclic compounds containing two or more hetero rings, at least one ring having oxygen and sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links

Definitions

  • ⁇ -lapachone (3,4-dihydro-2,2-dimethyl-2H-naphmo[l,2-b]pyran-5,6-dione), a quinone, is derived from lapachol (a naphthoquinone) which can be isolated from the lapacho tree (Tabebuia avellanedae), a member of the catalpa family (Bignoniaceae).
  • Lapachol and ⁇ -lapachone (with numbering) have the following chemical structures:
  • ⁇ -lapachone as well as its intermediates, derivatives and analogs thereof, are described in Li, CJ. et al, (1993) /. Biol. Chem., 268(30): 22463-22468.
  • ⁇ -lapachone has demonstrated significant antineoplastic activity against human cancer cell lines at concentrations typically in the range of 1-10 ⁇ M (IC 50 ). Cytotoxicity has been demonstrated in transformed cell lines derived from patients with promyelocytic leukemia (Planchon et al, (1996) Cancer Res., 55: 3706-3711), prostate (Li, CJ., et al, (1995) Cancer Res., 55: 3712-3715), malignant glioma (Weller, M.
  • Patent Nos. 5,763,625, 5,824,700, and 5,969,163, each of which is incorporated by reference herein, disclose analogs and derivatives with a variety of substituents at the 2-, 3- and 4-positions. Furthermore, a number of journals report ⁇ -lapachone analogs and derivatives with substituents at one or more of the following positions: 2-, 3-, 8- and/or 9-positions, (See, Sabba et al, (1984) J Med Chan 27:990-994 (substituents at the 2-, 8- and 9- positions); (Portela and Stoppani, (1996) Biochem Pharm 51 :275-283 (substituents at the 2- and 9- positions); Goncalves et al, (1998) Molecular and Biochemical Parasitology 1:167-176 (substituents at the 2- and 3- positions)).
  • the present invention provides the compounds of Formula I: or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein:
  • Ri, R 2 , R 3 , and R 4 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CV C 6 alkyl, unsubstituted or substituted CpCa alkoxy, Q-C 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, or amide;
  • R 5 is H or carboxyacid or carboxy esters
  • R 6 and R 7 are each, independently, H, unsubstituted or substituted C 1 -C 6 alkyl, unsubstituted or substituted C 1 -C 6 alkenyl, unsubstituted and substituted C r C ⁇ alkoxy, unsubstituted or substituted Ci-C 6 acyl, C 1 -C 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
  • X is H, -OR a , unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
  • R 3 is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -OR a and Ra and R 1 -R5 are all H, then R 5 and R 7 are not both H; if X and R 1 -Rg are all H, men R 7 is not methyl; and if X, R 1 -Rs and R 7 are all H, then R 5 is not methyl.
  • the present invention also provides the compounds of Formula II:
  • R 3 is H, halogen, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubtituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
  • R 5 is H or carboxyacid or carboxy esters
  • X is H, -OR a , unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
  • R a is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -OR a and Ra and Ri-R 5 are all H, then R 6 and R 7 are not both H; if X and Ri-R 5 are all H, then R 7 is not methyl; and if X, Ri-R 5 and R 7 are all H, then R 6 is not methyl.
  • R a is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -OR a and Ra and Ri-R 5 are all H, then R 6 and R 7 are not both H; if X and Ri-R 5 are all H, then R 7 is not methyl; and if X, Ri-R 5 and R 7 are all H, then R 6 is not methyl.
  • Ri, R 2 , R 3 , R4, R 5 , R 5 , R 7 , Rs, R 9 , and Ri 0 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CpC 6 allcyl, unsubstituted or substituted C 1 -C 6 alkenyl, unsubstituted or substituted Q-C 6 alkoxy, Ci-C 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, amide, unsubstituted or substituted Ci-C 6 acyl,
  • the present invention also provides pharmaceutical compositions comprising a compound of Formula I, II or III in combination with a pharmaceutically acceptable carrier.
  • a pharmaceutically acceptable carrier Preferably, the compound of Formula I, II or III is in a therapeutically effective amount.
  • the present invention also provides a method of treating or preventing cell proliferative disorders comprising administering to a mammal in need thereof a therapeutically effective amount of a compound of Formula I, II or III.
  • the present invention also provides a method of treating cancer or precancerous conditions or preventing cancer comprising administering to a mammal in need thereof a therapeutically effective amount of a compound of Formula I, II or III.
  • the present invention also provides methods for the synthesis of compounds of Formula I, II or III.
  • all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference. In the case of conflict, the present specification, including definitions, will control.
  • the materials, methods, and examples are illustrative only and are not intended to be limiting.
  • the present invention provides novel tricyclic dihydro-oxathiine naphthoquinone derivatives, a synthetic method for making the derivatives, and the use of the derivatives to inhibit neoplastic cell proliferation.
  • the naphthoquinone derivatives of the present invention are related to the compounds known as ⁇ -lapachone (3,4-dihydro-2,2-dimethyl-2H-naphtho(l,2-b)pyran-5,6-dione), The structure of ⁇ -lapachone is described above.
  • the ⁇ -lapachone analogs of die present invention include oxathiine hetero-rings.
  • the present invention provides the compounds of Formula I:
  • Ri, R 2 , R 3 , and R 4 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted C r C 6 alkyl, unsubstituted or substituted Ci-C 6 alkoxy, Q-C 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, or amide;
  • R is H or carboxyacid or carboxy esters
  • R 6 and R 7 are each, independently, H, unsubstituted or substituted C x -C 6 alkyl, unsubstituted or substituted C r C 6 alkenyl, unsubstituted and substituted C r C 6 alkoxy, unsubstituted or substituted C]-C 6 acyl, CpC 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
  • X is H, -OR 0 , unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
  • R a is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided mat if X is -OR 3 and Ra and R, -R 5 are all H, then R 6 and R7 are not both H; if X and Ri-R 6 are all H, then R 7 is not methyl; and if X, R]-R 5 and R 7 are all H, then Re is not methyl.
  • the present invention also provides the compounds of Formula II:
  • R 3 is H, halogen, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubtituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
  • R 5 is H or carboxyacid or carboxy esters
  • X is H, -OR 3 , unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle; Rj 1 is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -OR a and Ra and Ri-R 5 are all H, then R 5 and R 7 are not both H; if X and Ri-R 6 are all H, then R 7 is not methyl; and if X, Ri-R 5 and R 7 are all H, then R 6 is not methyl.
  • Compounds of Formula I and II include those in which, X is a H or substituted heterocycle.
  • the heterocycle can be piperazine or piperidine.
  • the heterocycle can be substituted with carbonylalkoxy; carboxyacid; phenyl; heteroaryl; heterocycle; hydroxyl; acetal; Ci-Ce alkyl, each of which may be substituted.
  • the heterocycle can be substituted at the 4-position.
  • the heterocycle can be substituted with carbonylalkoxy.
  • the carbonylalkoxy is substituted with carbonylalkoxy
  • the heterocycle can be substituted with hydroxyl.
  • the heterocycle can be substituted with substituted Ci-C 6 straight chain alkyl.
  • the substituted C]-C 6 straight chain alkyl can be -CH 2 W.
  • W can be hydroxyl, alkoxy, or -C(O)NR 8 Rg.
  • ' R 3 can be H or CpC 6 straight chain alkyl and R9 can be Ci-C 6 straight chain alkyl, C 3 -C 6 branched alkyl, C 3 -C 6 cycloalkyl.
  • W is hydroxyl or -C(O)NR 8 R 9 .
  • R 8 is H and R 9 is isopr ⁇ pyl.
  • the heterocycle can be substituted with substituted phenyl.
  • the phenyl can be substituted with at least one halogen.
  • the phenyl is substituted with F.
  • the heterocycle can be substituted with acetal.
  • the acetal is cyclic acetal.
  • Compounds of Formula I and II include those in which, X is -OR a .
  • R a can be a substituted amide.
  • the substituted amide can be -C(O)NRi 0 Rn.
  • Rio and R n are the same or different from each other and each can be H; unsubstituted or substituted phenyl; unsubstituted or substituted aryl; methyl; unsubstituted or substituted C 2 -C 6 straight chain alkyl; unsubstituted or substituted C 3 -C 6 branched alkyl; unsubstituted or substituted C 3 -C 8 cycloalkyl; unsubstituted or substituted C 3 -C 6 alkenyl; unsubstituted or substituted heterocycle; or unsubstituted or substituted heteroaryl.
  • Ri 0 is H and R u is a substituted or unsubstituted phenyl or C 3 -C 6 branched alky.
  • the phenyl can be substituted with halogen, hydroxyl, methyl, -CF 3 , C 2 -C 6 straight chain alkyl, C 3 -C 6 branched alkyl, C 3 -C 8 cycloalkyl, nitro, cyano, amino, alkylamino, dialkylamino, alkoxy, -OCF 3 , carboxyacid, carbonylalkyl, carbonylalkoxy, thio, thioalkyl, phenyl, aryl, heterocycle, or heteroaryl.
  • the phenyl is substituted with halogen, hydroxyl, -CF 3 , nitro, cyano, or alkoxy.
  • the phenyl is substituted with at least one halogen.
  • the halogen is F.
  • the branched alkyl is isopropyl.
  • R a can also be R x R y R z Si-.
  • R x , R y , and R z can be the same as or different from each other and each represents methyl, ethyl, i-propyl, t-butyl, or phenyl, hi one embodiment, R x and R y are both phenyl and R z is t-butyl.
  • R a can also be unsubstituted or substituted heterocycle.
  • the heterocycle is pyridine.
  • the pyridine is 3 -pyridine.
  • Compounds of Formula I and II include those in which, R 3 is H, unsubstituted or substituted phenyl or unsubstituted or substituted heterocycle. hi one embodiment, R 3 is unsubstituted phenyl or heterocycle.
  • the heterocycle is piperidine.
  • Preferred compounds of Formula I and II are those in which, X is alkylamiiio or dialkylamino, each which may be substituted.
  • the alkylamino or dialkylamino can be -NRi 2 Ri 3 .
  • Ri 2 and R [3 are each independently H, unsubstituted or substituted C 1 -C 6 straight chain alkyl, C 3 -C 6 branched alkyl, or unsubstituted or substituted benzyl.
  • Ri 2 can be substituted with Ci-C 6 straight chain alkyl.
  • the alkyl can be substituted with acetal.
  • R 13 can be ethylphenyl or methyl, hi one embodiment, Ri 2 is H and R ]3 is unsubstituted benzyl or substituted Ci-C 6 straight chain alkyl.
  • Ri, R 2 , R 3 , R 4 , R 5 , R 6 , R7, Rs, Ro, and R 10 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted C r C 6 alkyl, unsubstituted or substituted Ci-C 6 alkenyl, unsubstituted or substituted Q-C 6 alkoxy, CpC 6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, amide, unsubstituted or substituted C 1 -C 6 acyl, C 1
  • alkyl includes saturated aliphatic groups, including straight-chain alkyl groups (e.g., methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, decyl), branched-chain alkyl groups (e.g., isopropyl, tert-butyl, isobutyl).
  • alkyl further includes alkyl groups that have oxygen, nitrogen, or sulfur atoms replacing one or more hydrocarbon backbone carbon atoms.
  • a straight chain or branched alkyl has six or fewer carbon atoms in its backbone (e.g., C r C 6 for straight chain, C 3 -C 6 for branched chain), and more preferably four or fewer.
  • alkyl also includes both "unsubstituted” and “substituted alkyls”, the latter of which refers to alkyl moieties having substifuents replacing a hydrogen on one or more carbon of the hydrocarbon backbone.
  • substitutents can include, for example, alkyl, alkenyl, alkynyl, hydroxyl, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarlylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylarnino, carbamoyl, and ureido), amidino, imino, sulfhydryl, allcylthio, arylthio, thiocarboxylate, sul
  • alkylaryl or aralkyl moiety is an alkyl moiety substituted with an aryl (e.g., methylphenyl (benzyl)).
  • aryl e.g., methylphenyl (benzyl)
  • Alkyl also includes the side chains of natural and unnatural amino acids.
  • Aryl includes groups with aromaticity, including 5- and 6-membered "unconjugated", or single- ring aromatic groups that may include from one to four heteroatoms, as well as “conjugated”, or multicyclic systems with at least one aromatic ring.
  • aryl groups include phenyl, pyrrole, furan, thiophene, thiazole, isothiazole, imidazole, triazole, tetrazole, pyrazole, oxazole, isoxazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
  • aryl includes multicyclic groups, e.g., tricyclic, bicyclic, e.g., naphthalene, benzoxazole, benzodioxazole, benzothizole, benzoimidazole, benzothiophene, methylenedioxyphenyl, quinoline, isoquinoline, napthridine, indole, benzofliran, purine, benzofuran, deazapureine, or indolizine.
  • multicyclic groups e.g., tricyclic, bicyclic, e.g., naphthalene, benzoxazole, benzodioxazole, benzothizole, benzoimidazole, benzothiophene, methylenedioxyphenyl, quinoline, isoquinoline, napthridine, indole, benzofliran, purine, benzofuran, deazapureine, or indolizine.
  • aryl groups having heteroatoms in the ring structure may also be referred to as "aryl heterocycles", “heterocycles", “heterocyclyls”, “heteroaryls” or “heteroaromatics” e.g., pyridine, pyrazole, pyrimidine, fliran, isoxazole, imidazole[2,l,b]thiazole, triazole, pyrazine, benzothiophene, imidazole, or thiophene.
  • aryl heterocycles e.g., pyridine, pyrazole, pyrimidine, fliran, isoxazole, imidazole[2,l,b]thiazole, triazole, pyrazine, benzothiophene, imidazole, or thiophene.
  • the aromatic ring can be substituted at one or more ring positions with such substituents as described above, as for example, halogen, hydroxyl, alkyl, alkoxy, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, alkylaminocarbonyl, araUcylaminocarbonyl, alkenj'laminocarbonyl, alkylcarbonyl, arylcarbonyl, aralkylcarbonyl, alkenylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylthiocarbonyl, carboxyalkyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylainino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and
  • Aryl groups can also be fused or bridged with alicyclic or heterocyclic rings, which are not aromatic so as to form a multicyclic system ⁇ e.g., tetralin, methylenedioxyphenyl).
  • Alkenyl includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double bond.
  • alkenyl includes straight-chain alkenyl groups ⁇ e.g., ethenyl, propenyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl, nonenyl, decenyl), branched-chain alkenyl groups, cycloallcenyl ⁇ e.g., alicyclic) groups ⁇ e.g., cyclopropenyl, cyclopentenyl, cyclohexenyl, cycloheptenyl, cyclooctenyl), alkyl or alkenyl substituted cycloallcenyl groups, and cycloalkyl or cycloalkenyl substituted alkenyl groups.
  • alkenyl further includes alkenyl groups, which include oxygen, nitrogen, or sulfur replacing one or more hydrocarbon backbone carbons.
  • a straight chain or branched chain alkenyl group has six or fewer carbon atoms in its backbone ⁇ e.g., C 2 -C 6 for straight chain, C 3 -Ce for branched chain.
  • cycloalkenyl groups may have from three to eight carbon atoms in their ring structure, and more preferably have five or six carbons in the ring structure.
  • C 2 -C 6 includes alkenyl groups containing two to six carbon atoms.
  • alkenyl also includes both “unsubstituted alkenyls” and “substituted alkenyls”, the latter of which refers to alkenyl moieties having substituents replacing a hydrogen on one or more hydrocarbon backbone carbon atoms.
  • substituents can include, for example, alkyl groups, alkenyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfliydryl, alkylthio, arylthio, thiocarboxylate, sulf
  • Alkynyl includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but which contain at least one triple bond.
  • alkynyl includes straight chain alkynyl groups ⁇ e.g., ethynyl, propynyl, butynyl, pentynyl, hexynyl, heptynyl, octynyl, nonynyl, decynyl), branched chain alkynyl groups, and cycloalkyl or cycloallcenyl substituted alkynyl groups.
  • alkynyl further includes alkynyl groups having oxygen, nitrogen, sulfur or phosphorous atoms replacing one or more hydrocarbon backbone carbons.
  • a straight chain or branched chain alkynyl group has six or fewer carbon atoms in its backbone ⁇ e.g., C 2 -C 6 for straight chain, C 3 -C 6 for branched chain).
  • C 2 -C 6 includes alkynyl groups containing two to six carbon atoms.
  • alkynyl also includes both “unsubstituted alkynyls” and “substituted alkynyls”, the latter of which refers to alkynyl moieties having substituents replacing a hydrogen on one or more hydrocarbon backbone carbon atoms.
  • substituents can include, for example, allcyl groups, alkenyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylamiiiocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, s
  • lower alkyl includes an alkyl group, as defined above, but having from one to ten, more preferably from one to six, carbon atoms in its backbone structure.
  • Lower alkenyl and “lower alkynyl” have chain lengths of, for example, 2-5 carbon atoms.
  • amine or “amino” includes compounds where a nitrogen atom is covalently bonded to at least one carbon or heteroatom.
  • Alkylamino includes groups of compounds wherein nitrogen is bound to at least one additional alkyl group.
  • alkylamino groups examples include benzylamino, methylamino, ethylamino, and phenethylamino.
  • Dialkylamino includes groups wherein the nitrogen atom is bound to at least two additional allcyl groups. Examples of dialkylamino groups include dimethylamino and diethylamino.
  • Arylamino and “diarylamino” include groups wherein the nitrogen is bound to at least one or two aryl groups, respectively.
  • Alkylarylamino alkylaminoaryl or “arylaminoalkyl” refers to an amino group which is bound to at least one alkyl group and at least one aryl group.
  • Alkaminoalkyl refers to an alkyl, alkenyl, or alkynyl group bound to a nitrogen atom which is also bound to an alkyl group.
  • amide or "aminocarboxy” includes compounds or moieties that contain a nitrogen atom that is bound to the carbon of a carbonyl or a thiocarbonyl group.
  • alkaminocarboxy groups that include alkyl, alkenyl, or alkynyl groups bound to an amino group bound to a carboxy group. It includes arylaminocarboxy groups that include aryl or heteroaryl moieties bound to an amino group that is bound to the carbon of a carbonyl or thiocarbonyl group.
  • alkylaminocarboxy “alkenylaminocarboxy,” “alkynylaminocarboxy.,” and “arylaminocarboxy” include moieties wherein alkyl, alkenyl, alkynyl and aryl moieties, respectively, are bound to a nitrogen atom which is in turn bound to the carbon of a carbonyl group.
  • Amides can be substituted with substituents such as straight chain alkyl, branched allcyl, cycloalkyl, aryl, heteroaryl, or heterocycle. Substituents on amide groups may be further substituted.
  • Acyl includes compounds and moieties that contain the acyl radical (CH 3 CO-) or a carbonyl group.
  • Substituted acyl includes acyl groups where one or more of the hydrogen atoms are replaced by for example, alkyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarboiiyl, dialkylaminocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carb
  • Acylamino includes moieties wherein an acyl moiety is bonded to an amino group.
  • the term includes alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido groups.
  • alkoxy or "alkoxyl” includes substituted and unsubstituted alkyl, alkenyl, and alkynyl groups covalently linked to an oxygen atom.
  • alkoxy groups or alkoxyl radicals
  • alkoxy groups include methoxy, ethoxy, isopropyloxy, propoxy, butoxy, and pentoxy groups.
  • substituted alkoxy groups include halogenated alkoxy groups.
  • the alkoxy groups can be substituted with groups such as alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino
  • halogen substituted alkoxy groups include, but are not limited to, fluoromethoxy, difluoiOmetlioxy, trifluoromethoxy, chloromethoxy, dichloromethoxy, and trichloromethoxy.
  • cycloalkyl includes saturated acyclic groups (e.g., cyclopropyl, cyclopentyl, cyclohexyl, cyclohexyl, cycloheptyl, cyclooctyl).
  • Preferred cycloalkyls have from three to eight carbon atoms in their ring structure, and more preferably have five or six carbon atoms in the ring structure.
  • Cycloalkyls includes both "unsubstituted cycloalkyls" and “substituted cycloalkyls", the latter of which refers to replacing a hydrogen on one or more of the carbons in the ring structure.
  • substituents can include, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, aUcylaminocarbonyl, dialkylaminocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, aryltliio, thiocarboxylate, sul
  • heterocyclyl includes closed ring structures, e.g., 3, 4, 5, 6, 7, 8, 9, or 10-membered rings, which include one or more heteroatoms.
  • Heteroatom includes atoms of any element other than carbon or hydrogen. Examples of heteroatoms include nitrogen, oxygen, or sulfur.
  • Heterocyclyl groups or heterocycles can be saturated or unsaturated and include pyrrolidine, pyrazine, pyrimidine, oxolane, 1,3-dioxolane, thiolane, tetrahydrofuran, tetrahydropyran, piperidine, piperazine, pyrrolidine, morpholine, lactones, lactams such as azetidinones and pyrrolidinones, sultams, sultones, and protected heterocycles, such as tert-butoxy protected piperazine, in which protecting groups can be removed for further functionalization.
  • Heterocyclic groups such as pyrrole and furan can have aromatic character.
  • heterocyclic groups include fused ring structures such as quinoline and isoquinoline.
  • Other examples of heterocyclic groups include pyridine and purine.
  • the heterocyclic ring can be substituted at one or more positions with such substituents as described above, as for example, halogen, hydroxyl, acetal, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, alkoxycarbonyl, carbonylalkoxy, aminocarbonyl, alkyltliiocarbonyl, alkoxyl, cyano, amino (including allcyl amino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, aiylcarbonylamino, carbamoyl and ureido), amidino, imino, sul
  • Heterocyclic groups can also be substituted at one or more constituent atoms with, for example, a lower allcyl, a lower alkenyl, a lower alkoxy, a lower alkylthio, a lower alkylamino, a lower alkylcarboxyl, a nitro, a hydroxyl, -CF 3 , or -CN, or the like.
  • Substituents on a heterocyclic group can be further substituted e.g., with halogen, amide, hydroxyl, or alkoxy.
  • thioalkyl includes compounds or moieties which contain an alkyl group connected with a sulfur atom.
  • the thioalkyl groups can be substituted with groups such as allcyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, allcoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and allcylarylamino), acylamino (including allcylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino
  • carbonyl or “carboxy” includes compounds and moieties which contain a carbon connected with a double bond to an oxygen atom.
  • moieties containing a carbonyl include, but are not limited to, aldehydes, ketones, carboxylic acids, amides, esters, anhydrides, etc.
  • thiocarbonyl or "thiocarboxy” includes compounds and moieties which contain a carbon connected with a double bond to a sulfur atom.
  • hydroxy or "hydroxyl” includes groups with an -OH or -O " .
  • halogen includes fluorine, bromine, chlorine, iodine, etc.
  • perhalogenated generally refers to a moiety wherein all hydrogens are replaced by halogen atoms.
  • C1-C6 includes one to six carbon atoms (Cl, C2, C3, C4, C5 or C6).
  • C2- C6 includes two to six carbon atoms (C2, C3, C4, C5 or C6).
  • C3-C6 includes three to six carbon atoms (C3, C4, C5 or C6).
  • C3-C8 includes two to eight carbon atoms (C3, C4, C5, C6, C7 or C8).
  • C5-C8 includes five to eight carbon atoms (C5, C6, C7 or C8).
  • any heteroatom or carbon atom with unsatisfied valences is assumed to have the hydrogen atom to satisfy the valences.
  • the compounds described herein may have asymmetric centers.
  • Cis and trans geometric isomers of the compounds of the present invention are described and may be isolated as a mixture of isomers or as separated isomeric forms. All chiral, diastereomeric, racemic, and geometric isomeric forms of a structure are intended, unless the specific stereochemistry or isomeric form is specifically indicated. All tautomers of shown or described compounds are also considered to be part of the present invention. It is to be understood accordingly that the isomers arising from such asymmetry (e.g., all enantiomers and diastereomers) are included within the scope of the invention, unless indicated otherwise. Such isomers can be obtained in substantially pure form by classical separation techniques and by stereochemically controlled synthesis. Furthermore, the structures and other compounds and moieties discussed in this application also include all tautomers thereof. Alkenes can include either the E- or Z-geometry, where appropriate.
  • substituted means that any one or more hydrogens on the designated atom is replaced with a selection from the indicated group, provided that the designated atom's normal valency is not exceeded, and that the substitution results in a stable compound.
  • 2 hydrogens on the atom are replaced.
  • Keto substituents are not present on aromatic moieties.
  • “Stable compound” and “stable structure” are meant to indicate a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and formulation into an efficacious therapeutic agent.
  • a “pharmaceutically acceptable salt” or “salt” of the disclosed compound is a product of the disclosed compound that contains an ionic bond, and is typically produced by reacting the disclosed compound with either an acid or a base, suitable for administering to a subject.
  • Pharmaceutically acceptable salt can include, but is not limited to, acid addition salts including hydrochlorides, hydiObroinides, phosphates, sulphates, hydrogen sulphates, alkylsulphonates, arylsulphonates, acetates, benzoates, citrates, maleates, fumarates, succinates, lactates, and tartrates; alkali metal cations such as Na, K, Li, alkali earth metal salts such as Mg or Ca, or organic amine salts.
  • a "pharmaceutical composition” is a formulation containing the disclosed compounds in a form suitable for administration to a subject.
  • the pharmaceutical composition is in bulk or in unit dosage form.
  • the unit dosage form is any of a variety of forms, including, for example, a capsule, an IV bag, a tablet, a single pump on an aerosol inhaler, or a vial.
  • the quantity of active ingredient (e.g., a formulation of the disclosed compound or salts thereof) in a unit dose of composition is an effective amount and is varied according to the particular treatment involved.
  • active ingredient e.g., a formulation of the disclosed compound or salts thereof
  • the dosage will also depend on the route of administration.
  • routes including oral, pulmonary, rectal, parenteral, transdermal, subcutaneous, intravenous, intramuscular, intraperitoneal, intranasal, and the like.
  • Dosage forms for the topical or transdermal administration of a compound of this invention include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants.
  • the active compound is mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that are required.
  • the present invention also provides pharmaceutical formulations comprising a compound of Formula I, II or III in combination with at least one pharmaceutically acceptable excipient or carrier.
  • pharmaceutically acceptable excipient or “pharmaceutically acceptable carrier” is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration. Suitable carriers are described in "Remington: The Science and Practice of Pharmacy, Twentieth Edition," Lippincott Williams & Wilkins, Philadelphia, PA., which is incorporated herein by reference.
  • Such carriers or diluents include, but are not limited to, water, saline, Ringer's solutions, dextrose solution, and 5% human serum albumin.
  • Liposomes and non-aqueous vehicles such as fixed oils may also be used.
  • the use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated. Supplementary active compounds can also be incorporated into the compositions.
  • a compound of Formula I, II or III is administered in a suitable dosage form prepared by combining a therapeutically effective amount (e.g., an efficacious level sufficient to achieve the desired therapeutic effect through inhibition of tumor growth, killing of tumor cells, treatment or prevention of cell proliferative disorders, etc.) of a compound of Formula I, II or III (as an active ingredient) with standard pharmaceutical earners or diluents according to conventional procedures (i.e., by producing a pharmaceutical composition of the invention).
  • a therapeutically effective amount e.g., an efficacious level sufficient to achieve the desired therapeutic effect through inhibition of tumor growth, killing of tumor cells, treatment or prevention of cell proliferative disorders, etc.
  • standard pharmaceutical earners or diluents i.e., by producing a pharmaceutical composition of the invention.
  • a therapeutically effective amount of a compound of Formula I, II or III is administered in a suitable dosage form without standard pharmaceutical carriers or diluents.
  • Pharmaceutically acceptable carriers include solid carriers such as lactose, terra alba, sucrose, talc, gelatin, agar, pectin, acacia, magnesium stearate, stearic acid and the like.
  • Exemplary liquid earners include syrup, peanut oil, olive oil, water and the like.
  • the carrier or diluent may include time- delay material known in the art, such as glyceryl monostearate or glyceryl distearate, alone or with a wax, ethylcellulose, hydroxypropylmethylcellulose, methylmethacrylate or the like.
  • Other fillers, excipients, flavorants, and other additives such as are known in the art may also be included in a pharmaceutical composition according to this invention.
  • compositions containing active compounds of the present invention may be manufactured in a manner that is generally known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping, or lyophilizing processes.
  • Pharmaceutical compositions may be formulated in a conventional manner using one or more physiologically acceptable carriers comprising excipients and/or auxiliaries which facilitate processing of the active compounds into preparations that can be used pharmaceutically. Of course, the appropriate formulation is dependent upon the route of administration chosen.
  • a compound or pharmaceutical composition of the invention can be administered to a subject in many of the well-known methods currently used for chemotherapeutic treatment.
  • a compound of the invention may be injected directly into tumors, injected into the blood stream or body cavities or taken orally or applied through the skin with patches.
  • systemic administration e.g., oral administration
  • topical administration to affected areas of the skin are preferred routes of administration.
  • the dose chosen should be sufficient to constitute effective treatment but not so high as to cause unacceptable side effects.
  • the state of the disease condition e.g., cancer, psoriasis, and the like
  • the health of the patient should be closely monitored during and for a reasonable period after treatment.
  • the present invention also provides a method for the treatment of cell proliferative disorders in a mammal comprising administering to a mammal in need of such treatment, an therapeutically effective amount of a compound Formula I, II or III.
  • the invention further provides the use of a compound of Formula I, II or III for the preparation of a medicament useful for the treatment of a cell proliferative disorder.
  • the invention provides for the treatment of cancer or precancerous conditions in a mammal comprising administering to a mammal in need of such treatment, an therapeutically effective amount of a compound of Formula I, II or III.
  • An effective amount of a compound of Formula I, II or III is used in a method to treat a cell proliferative disorder in a mammal without affecting normal cells of the mammal.
  • a therapeutically effective amount of a compound of Formula I, II or III is used in a method for treating cancer in a mammal by inducing cell death in cancer cells without affecting normal cells in the mammal. Cell death can occur by either apoptosis or necrosis mechanisms.
  • administration of a therapeutically effective amount of a compound of Formula I, II or III induces sustained (non-transient) activity (e.g. elevation of the level) of a checkpoint molecule in abnormally proliferating cells without affecting checkpoint molecule activity in normal cells.
  • administration of a therapeutically effective amount of a compound of Formula I, II or III induces activation of E2F1 checkpoint pathway in abnormally proliferating cells without significantly affecting normal cells.
  • administration induces sustained E2F pathway activity (e.g. elevation of E2F levels) in cancer cells without affecting E2F pathway activity (e.g. E2F levels) in normal cells.
  • sustained E2F pathway activity e.g. elevation of E2F levels
  • E2F pathway activity e.g. E2F levels
  • Methods of measuring induction of E2F activity and elevation of E2F levels are as shown in Li et al, (2003) Proc Natl Acad Sd USA. 100(5): 2674-8.
  • administration of a therapeutically effective amount of a compound of Formula I, II or III induces cell death in abnormally proliferating cells without inducing cell death in normal cells.
  • the invention also provides a method of protecting against a cell proliferative disorder in a mammal by administering a therapeutically effective amount of a compound of Formula I, II or III to a mammal.
  • the invention also provides the use of a compound of Formula I, II or III for the preparation of a medicament useful for the prevention of a cell proliferative disorder.
  • the invention provides for the prevention of cancer in a mammal comprising administering to a mammal in need of such treatment, a therapeutically effective amount of a compound of Formula I, II or III.
  • the compounds of the invention are administered in the form of pharmaceutical compositions, e.g., as described herein.
  • the mammal can be e.g., any mammal, e.g., a human, a primate, mouse, rat, dog, cat, cow, horse, pig.
  • the mammal is a human.
  • cell proliferative disorder refers to conditions in which the unregulated and/or abnormal growth of cells can lead to the development of an unwanted condition or disease, which can be cancerous or non-cancerous, for example a psoriatic condition.
  • psoriatic condition refers to disorders involving keratinocyte hyperproliferation, inflammatory cell infiltration, and cytokine alteration.
  • the cell proliferation disorder is cancer.
  • cancer includes solid tumors, such as lung, breast, colon, ovarian, prostate, malignant melanoma, non-melanoma skin cancers, as well as hematologic tumors and/or malignancies, such as childhood leukemia and lymphomas, multiple myeloma, Hodgkin's disease, lymphomas of lymphocytic and cutaneous origin, acute and chronic leukemia such as acute lymphoblastic, acute myelocytic or chronic myelocytic leukemia, plasma cell neoplasm, lymphoid neoplasm and cancers associated with AIDS.
  • proliferative diseases which may be treated using the compositions of the present invention are epidermic and dermoid cysts, lipomas, adenomas, capillary and cutaneous hemangiomas, lymphangiomas, nevi lesions, teratomas, nephromas, myofibromatosis, osteoplastic tumors, and other dysplastic masses and the like.
  • proliferative diseases include dysplasias and disorders of the like.
  • the invention also provides methods for the synthesis of the compounds of Formula I, II, III.
  • the present invention provides a method for the synthesis of compounds according to scheme 1-2 and protocols A-B.
  • compositions are described as having, including, or comprising specific components, it is contemplated that compositions also consist essentially of, or consist of, the recited components.
  • methods or processes are described as having, including, or comprising specific process steps, the processes also consist essentially of, or consist of, the recited processing steps.
  • steps or order for performing certain actions is immaterial so long as the invention remains operable.
  • two or more steps or actions can beconducted simultaneously.
  • the synthetic processes of the invention can tolerate a wide variety of functional groups, therefore various substituted starting materials can be used.
  • the processes generally provide the desired final compound at or near the end of the overall process, although it may be desirable in certain instances to further convert the compound to a pharmaceutically acceptable salt, ester, or prodrug thereof.
  • Schemes 1-2 and protocols A-B depicts a general synthesis for a family of compounds of the invention.
  • Compounds encompassed in the invention can be produced according to this or other synthetic processes without departing from the spirit or essential characteristics of the invention. All changes that come within the meaning and range of equivalency of the compounds are intended to be embraced herein.
  • one of ordinary skill in the art would know how to alter the synthetic schemes illustrated herein so as to produce a desired substitution pattern on a compound, produce an increased or decreased product yield, minimize reaction side products, eliminate the use of dangerous or toxic chemical reactants, and/or to produce a desired amount of product (e.g., scale-up reaction size for commercial manufacture), and the like.
  • the compounds of this invention with general formula (I) may be prepared according to the following schemes from commercially available starting materials or starting materials, which can be prepared using literature procedures. These schemes show the preparation of representative compounds of this invention.
  • the compounds of the present invention can be prepared from the reaction of 1,2-quinone alcohol (II) and appropriate intermediate/commercial reagents as shown in Scheme 1.
  • the 1,2-quinone mesylate (III) is treated with primary and seconday amines, tertiary amine bases such as triethyl amine, diisoproylethyl amine, dimethylamino pyridine in solvents such as dimethylsulfoxide for 0.5-4 hours at ambient temperatures to 80 0 C to provide 1,2-quinone amines (IV).
  • primary and secondary amines are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
  • the 1,2-quinone amines (IV) formed from the reaction of primary amines with the 1,2-quinone mesylate (III) could be further functionalized with acid chlorides and carboxylic acids to form amides, sulfonyl chlorides to form sulfonamides, isocyanates to form ureas, carbamoyl chlorides to form carbamates, sulfonyl isocyanates to form sulfonyl ureas, epoxides to form amino alcohols, heterocyclic halides to form amino heterocycles, anhydrides to form keto alkyl or aryl acids, alkyl or aryl bromides, iodides to form amino alkyls or amino aryls.
  • 1,2-Quinone aryl ethers (VI) can be conveniently prepared by treating 1,2-quinone alcohol (II) with ⁇ yridine-3-ol, under mitsunobu conditions using triphenyl phosphine, DEAD (diethylazidodicarboxylate) in solvents such as THF (tetrahydrofuran) for 6-24 hours at ambient temperatures.
  • DEAD diethylazidodicarboxylate
  • solvents such as THF (tetrahydrofuran)
  • activating reagents such as DIAD, DBAD can also be used.
  • the compounds of the present invention can be prepared from the reaction of 1,2-quinone (VII) and appropriate intermediate/commercial reagents as shown in Scheme 2.
  • Compounds of formula (VIII) can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 2.
  • Bromo- 1,2-quinone (VII) is treated with a palladium catalyst such as l,r-bis ⁇ di(t-butylphosphine)ferrocene]PdCl, boronic acids such as phenyl boronic acid, bases such as potassium carbonate in solvents such as 1,4-dioxane for 2-8 hours at 60-100 0 C to provide phenyl substituted 1,2-quinone (VIII).
  • a palladium catalyst such as l,r-bis ⁇ di(t-butylphosphine)ferrocene]PdCl
  • boronic acids such as phenyl boronic acid
  • bases such as potassium carbon
  • bases such as sodium carbonate, cesium carbonate and palladium (0) catalysts such as bis(tri-te? ⁇ -butyl phosphine)palladium(O) can also be used.
  • palladium (0) catalysts such as bis(tri-te? ⁇ -butyl phosphine)palladium(O) can also be used.
  • 1,2-Quinones oxathiine (XI) can be conveniently prepared in two steps.
  • 1,2-quinone (X) is treated with propane-l,3-thioalcohols (XVI), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures.
  • Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XI).
  • bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i).
  • Acid such as trifJuoroacetic acid in solvents such as dichloromethane can also be used in step (ii).
  • propane-l,3-thioalcohols XVI) are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
  • 1 ,2-Quinones oxathiine (XII) can be conveniently prepared in two setps.
  • 1,2-quinone (X) is treated with protected 1,2-thioalcohol (XVII), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures.
  • Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XII).
  • bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i).
  • Acid such as trifluoroacetic acid in solvents such as dichloromethane can also be used in step (ii).
  • Many 1,2-thioalcohols are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
  • 1,2-Quinones oxathiine (XlII) where R"" is methyl or isopropyl group can be conveniently prepared in two steps using the 1,2-thioacohols (XV).
  • the thioalcohols (XV) where Y is a triphenylsilane protecting group and R"" is methyl or isopropyl can be prepared by treating epoxides (XIV) with triphenylsilanethiol, tertiary amine bases such as triethylamine, diisopropylethyl amine in solvents such as tetrahydrofuran for 1-5 hours at ambient temperatures.
  • thioalcohols (XV) where Y is hydrogen can be prepared by treating epoxides (XIV) with thiol sources such as sodium hydrosulfide, sodium sulfide in solvents such as isopropanol for 1-5 hours at ambient temperatures.
  • the 1,2- thioalcohols (XV) are treated with 1,2-quinone (X) to prepare 1,2-quinones oxathiine (XIII) in a two-step procedure.
  • Step(i) 1,2-quinone (X) is treated with 1,2-thioalcohol (XV), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures.
  • Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XIII).
  • acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XIII).
  • bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i).
  • Acids such as trifluoroacetic acid in solvents such as dichloromethane can also be used in step (ii).
  • Many epoxides are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
  • naphthalene-l,2-dione (0.103 g, 0.65 mmol) in acetonitrile (4.0 mL) was added l- ⁇ [t ⁇ - ⁇ butyl(diphenyl)silyl]oxy ⁇ -3-mercaptopropan-2-ol (0.226 g, 0.065 mmol) followed by diisopropylethylamine (0.114 niL, 0.065 mmol).
  • ⁇ ie reaction mixture was stirred for 10 minutes at room temperature followed by addition of ethyl acetate (10 niL). The organic layer was washed with water (10 niL) and 1.0 N HCl (5 mL).
  • the aqueous layer was extracted with dichloromethane (2 x 20 mL).
  • the organic extracts were combined and extracted thrice with 1.0N HCl (10 mL).
  • the HCl extracts were combined and its pH adjusted to 9 with a saturated sodium carbonate solution.
  • the aqueous layer was extracted with dichlqromethane (2 x 20 mL), extracts combined, dried with sodium sulfate and concentrated under reduced pressure.
  • the crude mixture was purified by flash column chromatography (SiO 2 , 50% EtOAc in hexanes to 80% EtOAc in hexanes) to give the product as a purple solid (0.065 g, 14%). M.p.
  • Compounds of the present invention have demonstrated potent antiproliferative activity against a variety of cancer cell lines, including DLD-I and HT-29 human colon carcinoma cells; A549 human lung carcinoma cells; DU-145 human prostate carcinoma cells; K-562 human leukemia cells; and PACA-2 human pancreatic carcinoma cells. Since ⁇ -lapachone induces cell death only in cancer cell lines and not in normal cells (Li et at, (2003) Proc Natl Acad Sd USA. 100(5): 2674-8), die present compounds were also tested in a panel of normal cell lines from a variety of tissues including NCM-460 normal colon epithelial cells. Table 1 shows the concentrations of the compounds required to inhibit 50% of cell growth (IC50).
  • IC 50 values in the low micromolar range and below were obtained for several of these compounds in all cancer cell lines tested.
  • Another effect of the compounds of the present invention is the induction or elevation of activity (e.g. elevation of the level) of one or more checkpoint molecules (i.e., a member of the E2F family of transcription factors).
  • checkpoint molecules i.e., a member of the E2F family of transcription factors.
  • ⁇ -lapachone induces activation of E2F1 checkpoint pathway in nuclei of cancer cells but not in normal cells, resulting in the arrest of cancer cells in Gl and/or S phase.
  • Several compounds of the present invention were effective in activating the E2F1 checkpoint pathway, thus causing Gl and/or S phase arrest.
  • the compounds of the present invention have no significant toxic effects on normal cells (See, Table 1).
  • Cell viability was determined by measuring the activity of dehydrogenase enzymes in metabolically active cells using a tetrazolium compound, MTS. The assay was performed as described in Promega Technical Bulletin No. 169 (CellTiter 96 Aqueous Non-Radioactive Cell Proliferation Assay): All cells lines were grown in DMEM media (4.5g/L glucose) supplemented with 15% heat-inactivated FBS, 1OmM L-glutamine, and 1OmM HEPES.
  • test compounds were serially diluted in DMSO, further diluted in cell culture media, men added to cells (final DMSO concentration of 0.33% v/v); cells were incubated in the presence of compound for 4 hours; MTS was added to the cells and incubated for four hours; SDS was added to a final concentration of 1.4% v/v and absorbance at 49OnM was measured within two hours using a plate reader. The amount of 49OnM absorbance was directly proportional to the number of living cells in the culture.
  • the IC 50 was defined as the concentration of compound that results in a 50% reduction in the number of viable cells as compared to control wells treated ⁇ v ' ith DMSO only (0.33% v/v) and 1.4% v/v SDS, and was calculated using non-linear regression analysis within Activitybase software suite.
  • the antiproliferative activity of the present dihydro-oxathiine naphthoquinone derivative compounds suggests that compounds of the present invention may show wide anticancer activity.
  • the compounds of the invention are effective for treating cancers such as colon, lung, prostate, leukemia, and pancreas. These treatments are accomplished utilizing the present dihydro-oxathiine naphthoquinone derivative compounds, alone or can be utilized in combination with, other chemotherapy agents or with radiation therapy.
  • the compounds of the present invention are used for the prevention or treatment of a hyperproliferative disorder and cancer (e.g., as a preventative drag) by preventing hyperproliferative or cancer cell formation.
  • the results of experiments with ⁇ -lapachone and similar chemical compounds have shown that Hie compounds of the present invention have a cell death effect on a variety of human cancer cells and that they can inhibit growth of other human cancer cells.

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Abstract

The invention provides lapachone analogs and derivatives as well as methods of use thereof. These compounds can be used in pharmaceutical compositions for the treatment or prevention of cell proliferation disorders. These compounds can also be used in the treatment or prevention of cancer or precancerous conditions.

Description

TITLE OF THE INVENTION
NOVEL LAPACHONE COMPOUNDS AND METHODS OF USE THEREOF
BACKGROUND OF THE INVENTION β-lapachone (3,4-dihydro-2,2-dimethyl-2H-naphmo[l,2-b]pyran-5,6-dione), a quinone, is derived from lapachol (a naphthoquinone) which can be isolated from the lapacho tree (Tabebuia avellanedae), a member of the catalpa family (Bignoniaceae). Lapachol and β-lapachone (with numbering) have the following chemical structures:
Figure imgf000002_0001
Lapachol Beta-Lapachone
β-lapachone, as well as its intermediates, derivatives and analogs thereof, are described in Li, CJ. et al, (1993) /. Biol. Chem., 268(30): 22463-22468. As a single agent, β-lapachone has demonstrated significant antineoplastic activity against human cancer cell lines at concentrations typically in the range of 1-10 μM (IC50). Cytotoxicity has been demonstrated in transformed cell lines derived from patients with promyelocytic leukemia (Planchon et al, (1996) Cancer Res., 55: 3706-3711), prostate (Li, CJ., et al, (1995) Cancer Res., 55: 3712-3715), malignant glioma (Weller, M. et al, (1997) Int. J. Cancer, 73: 707-714), hepatoma (Lai, CC, etal, (1998) Histol Histopathol, 13: 89-97), colon (Huang, L., et al, (1999) MoI Med, 5,: 711-720), breast (Wuertzberger, S.M., et al, (1998) Cancer Res., 58: 1876), ovarian (Li, CJ. et al, (1999) Proc. Natl. Acad. ScI USA, 96(23): 13369-13374), pancreatic (Li, Y., et al, (2000) MoI Med, 6: 1008-1015; Li, Y., (1999) MoI Med, 5: 232-239), and multiple myeloma cell lines, including drug-resistant lines (Li, Y., (2000) MoI Med, 6: 1008-1015). No cytotoxic effects were observed on normal fresh or proliferating human PBMC (Li, Y., (2000) MoI Med, 6: 1008- 1015). β-lapachone appears to work by inducing unscheduled expression of checkpoint molecules, e.g. E2F, independent of DNA damage and cell cycle stages. Several studies have shown that β-lapachone activates the E2F1 checkpoint pathway and induces cell death in cancer cells from a variety of tissues without affecting normal cells from these tissues (U.S. Patent Application Publication No. 2002/0169135, incorporated by reference herein). In normal cells with their intact regulatory mechanisms, such an imposed expression of a checkpoint molecule results in a transient expression pattern and causes little consequence. In contrast, cancer and pre-cancer cells have defective mechanisms, which result in unchecked and persistent expression of unscheduled checkpoint molecules, e.g. E2F1, leading to selective cell death in cancer and pre-cancer cells.
In addition to β-lapachone, a number of β-lapachone analogs having antiproliferative properties have been disclosed in the art, such as those described in PCT International Application PCT/US93/07878 (WO94/04145), which is incorporated by reference herein, and U.S. Pat. No. 6,245,807, incorporated by reference herein, in which a variety of substituents may be attached at positions 3- and 4- on the β-lapachone compound. PCT International Application PCT/USOO/10169 (WO 00/61142), incorporated by reference herein, discloses β-lapachone, which may have a variety of substituents at the 3- position as well as in place of the methyl groups attached at the 2-ρosition. U.S. Patent Nos. 5,763,625, 5,824,700, and 5,969,163, each of which is incorporated by reference herein, disclose analogs and derivatives with a variety of substituents at the 2-, 3- and 4-positions. Furthermore, a number of journals report β-lapachone analogs and derivatives with substituents at one or more of the following positions: 2-, 3-, 8- and/or 9-positions, (See, Sabba et al, (1984) J Med Chan 27:990-994 (substituents at the 2-, 8- and 9- positions); (Portela and Stoppani, (1996) Biochem Pharm 51 :275-283 (substituents at the 2- and 9- positions); Goncalves et al, (1998) Molecular and Biochemical Parasitology 1:167-176 (substituents at the 2- and 3- positions)).
Moreover, U.S. Patent Application Publication No. 2004/0266857 and PCT International Application PCT/US2003/037219 (WO 04/045557), incorporated in by reference herein, disclose and several journal reports describe structures having sulfur-containing hetero-rings in the "α" and "β" positions of lapachone (Kurokawa S, (1970) Bulletin of The Chemical Society of Japan 43:1454-1459; Tapia, RA et al, (2000) Heterocycles 53(3):585-598; Tapia, RA et al, (1997) Tetrahedron Letters 38(1):153-154; Chuang, CP et al, (1996) Heterocycles 40(10):2215-2221; Suginome H et al, (1993) Journal of the Chemical Society, Chemical Communications 9:807-809; Tonholo J et al, (1988) Journal of the Brazilian Chemical Society 9(2):163-169; and Krapcho AP et al, (1990) Journal of Medicinal Chemistry 33(9):2651-2655). These findings encourage the design and synthesis of new lapachone derivatives and analogs and their evaluation for antiproliferative activity in a variety of biological systems.
SUMMARY OF THE INVENTION The present invention provides the compounds of Formula I:
Figure imgf000004_0001
or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein:
Ri, R2, R3, and R4 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CV C6 alkyl, unsubstituted or substituted CpCa alkoxy, Q-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, or amide;
R5 is H or carboxyacid or carboxy esters;
R6 and R7 are each, independently, H, unsubstituted or substituted C1-C6 alkyl, unsubstituted or substituted C1-C6 alkenyl, unsubstituted and substituted CrCδ alkoxy, unsubstituted or substituted Ci-C6 acyl, C1-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
X is H, -ORa, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
R3 is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -ORaand Ra and R1-R5 are all H, then R5 and R7 are not both H; if X and R1-Rg are all H, men R7 is not methyl; and if X, R1-Rs and R7 are all H, then R5 is not methyl.
The present invention also provides the compounds of Formula II:
Figure imgf000004_0002
or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein:
R3 is H, halogen, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubtituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
R5 is H or carboxyacid or carboxy esters;
X is H, -ORa, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
Ra is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -ORaand Ra and Ri-R5 are all H, then R6 and R7 are not both H; if X and Ri-R5 are all H, then R7 is not methyl; and if X, Ri-R5 and R7 are all H, then R6 is not methyl. also provides the compounds of Formula III:
Figure imgf000005_0001
(III) or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein: wherein Ri, R2, R3, R4, R5, R5, R7, Rs, R9, and Ri0 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CpC6 allcyl, unsubstituted or substituted C1-C6 alkenyl, unsubstituted or substituted Q-C6 alkoxy, Ci-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, amide, unsubstituted or substituted Ci-C6 acyl, Ci-C6 alkoxycarbonyl, amino, alkylamino, or dialkylamino.
The present invention also provides pharmaceutical compositions comprising a compound of Formula I, II or III in combination with a pharmaceutically acceptable carrier. Preferably, the compound of Formula I, II or III is in a therapeutically effective amount.
The present invention also provides a method of treating or preventing cell proliferative disorders comprising administering to a mammal in need thereof a therapeutically effective amount of a compound of Formula I, II or III. The present invention also provides a method of treating cancer or precancerous conditions or preventing cancer comprising administering to a mammal in need thereof a therapeutically effective amount of a compound of Formula I, II or III.
The present invention also provides methods for the synthesis of compounds of Formula I, II or III. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference. In the case of conflict, the present specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and are not intended to be limiting.
Other features and advantages of the present invention are apparent from the additional descriptions provided herein including the different examples. The provided examples illustrate different components and methodology useful in practicing the present invention. The examples do not limit the claimed invention. Based on the present disclosure the skilled artisan can identify and employ other components and methodology useful for practicing the present invention.
BRIEF DESCRIPTION OF THE DRAWINGS
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides novel tricyclic dihydro-oxathiine naphthoquinone derivatives, a synthetic method for making the derivatives, and the use of the derivatives to inhibit neoplastic cell proliferation. The naphthoquinone derivatives of the present invention are related to the compounds known as β-lapachone (3,4-dihydro-2,2-dimethyl-2H-naphtho(l,2-b)pyran-5,6-dione), The structure of β-lapachone is described above. The β-lapachone analogs of die present invention include oxathiine hetero-rings.
The present invention provides the compounds of Formula I:
Figure imgf000006_0001
Q or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein:
Ri, R2, R3, and R4 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted Cr C6 alkyl, unsubstituted or substituted Ci-C6 alkoxy, Q-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, or amide;
Rs is H or carboxyacid or carboxy esters;
R6 and R7 are each, independently, H, unsubstituted or substituted Cx-C6 alkyl, unsubstituted or substituted CrC6 alkenyl, unsubstituted and substituted CrC6 alkoxy, unsubstituted or substituted C]-C6 acyl, CpC6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
X is H, -OR0, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
Ra is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided mat if X is -OR3 and Ra and R, -R5 are all H, then R6 and R7 are not both H; if X and Ri-R6 are all H, then R7 is not methyl; and if X, R]-R5 and R7 are all H, then Re is not methyl.
The present invention also provides the compounds of Formula II:
Figure imgf000007_0001
or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein: R3 is H, halogen, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubtituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
R5 is H or carboxyacid or carboxy esters;
X is H, -OR3, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle; Rj1 is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -ORa and Ra and Ri-R5 are all H, then R5 and R7 are not both H; if X and Ri-R6 are all H, then R7 is not methyl; and if X, Ri-R5 and R7 are all H, then R6 is not methyl. Compounds of Formula I and II include those in which, X is a H or substituted heterocycle. The heterocycle can be piperazine or piperidine. The heterocycle can be substituted with carbonylalkoxy; carboxyacid; phenyl; heteroaryl; heterocycle; hydroxyl; acetal; Ci-Ce alkyl, each of which may be substituted. The heterocycle can be substituted at the 4-position.
The heterocycle can be substituted with carbonylalkoxy. In one embodiment, the carbonylalkoxy
Figure imgf000007_0002
The heterocycle can be substituted with hydroxyl.
The heterocycle can be substituted with substituted Ci-C6 straight chain alkyl. The substituted C]-C6 straight chain alkyl can be -CH2W. W can be hydroxyl, alkoxy, or -C(O)NR8Rg.' R3 can be H or CpC6 straight chain alkyl and R9 can be Ci-C6 straight chain alkyl, C3-C6 branched alkyl, C3-C6 cycloalkyl. In one embodiment, W is hydroxyl or -C(O)NR8R9. For example, R8 is H and R9 is isoprσpyl.
The heterocycle can be substituted with substituted phenyl. The phenyl can be substituted with at least one halogen. For example, the phenyl is substituted with F.
The heterocycle can be substituted with acetal. For example, the acetal is cyclic acetal. Compounds of Formula I and II include those in which, X is -ORa. Ra can be a substituted amide. The substituted amide can be -C(O)NRi0Rn. Rio and Rn are the same or different from each other and each can be H; unsubstituted or substituted phenyl; unsubstituted or substituted aryl; methyl; unsubstituted or substituted C2-C6 straight chain alkyl; unsubstituted or substituted C3-C6 branched alkyl; unsubstituted or substituted C3-C8 cycloalkyl; unsubstituted or substituted C3-C6 alkenyl; unsubstituted or substituted heterocycle; or unsubstituted or substituted heteroaryl. hi one embodiment, Ri0 is H and Ru is a substituted or unsubstituted phenyl or C3-C6 branched alky. The phenyl can be substituted with halogen, hydroxyl, methyl, -CF3, C2-C6 straight chain alkyl, C3-C6 branched alkyl, C3-C8 cycloalkyl, nitro, cyano, amino, alkylamino, dialkylamino, alkoxy, -OCF3, carboxyacid, carbonylalkyl, carbonylalkoxy, thio, thioalkyl, phenyl, aryl, heterocycle, or heteroaryl. For example, the phenyl is substituted with halogen, hydroxyl, -CF3, nitro, cyano, or alkoxy. In another example, the phenyl is substituted with at least one halogen. For example, the halogen is F. hi another example, the branched alkyl is isopropyl. Ra can also be RxRyRzSi-. Rx, Ry, and Rz can be the same as or different from each other and each represents methyl, ethyl, i-propyl, t-butyl, or phenyl, hi one embodiment, Rx and Ry are both phenyl and Rz is t-butyl.
Ra can also be unsubstituted or substituted heterocycle. For example, the heterocycle is pyridine. For example, the pyridine is 3 -pyridine. Compounds of Formula I and II include those in which, R3 is H, unsubstituted or substituted phenyl or unsubstituted or substituted heterocycle. hi one embodiment, R3 is unsubstituted phenyl or heterocycle. For example, the heterocycle is piperidine.
Preferred compounds of Formula I and II are those in which, X is alkylamiiio or dialkylamino, each which may be substituted. The alkylamino or dialkylamino can be -NRi2Ri3. Ri2 and R[3 are each independently H, unsubstituted or substituted C1-C6 straight chain alkyl, C3-C6 branched alkyl, or unsubstituted or substituted benzyl. Ri2 can be substituted with Ci-C6 straight chain alkyl. The alkyl can be substituted with acetal. R13 can be ethylphenyl or methyl, hi one embodiment, Ri2 is H and R]3 is unsubstituted benzyl or substituted Ci-C6 straight chain alkyl.
Compounds of Formula I and II include those in which, R5 and X are both H. n also provides the compounds of Formula III:
Figure imgf000008_0001
(Ill) or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein: Ri, R2, R3, R4, R5, R6, R7, Rs, Ro, and R10 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CrC6 alkyl, unsubstituted or substituted Ci-C6 alkenyl, unsubstituted or substituted Q-C6 alkoxy, CpC6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, amide, unsubstituted or substituted C1-C6 acyl, C1-C6 alkoxycarbonyl, amino, alkylamino, or dialkylamino. Compounds of Formula III include those in WbJcIiR6 is unsubstituted or substituted C1-C6 alkyl. Preferably, Rc is propyl.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. In case of a conflict in terminology, the present specification controls. The following terms generally have the following meanings.
As used herein, the term "alkyl" includes saturated aliphatic groups, including straight-chain alkyl groups (e.g., methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, decyl), branched-chain alkyl groups (e.g., isopropyl, tert-butyl, isobutyl). "Alkyl" further includes alkyl groups that have oxygen, nitrogen, or sulfur atoms replacing one or more hydrocarbon backbone carbon atoms. In certain embodiments, a straight chain or branched alkyl has six or fewer carbon atoms in its backbone (e.g., Cr C6 for straight chain, C3-C6 for branched chain), and more preferably four or fewer.
The term "alkyl" also includes both "unsubstituted" and "substituted alkyls", the latter of which refers to alkyl moieties having substifuents replacing a hydrogen on one or more carbon of the hydrocarbon backbone. Such substitutents can include, for example, alkyl, alkenyl, alkynyl, hydroxyl, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarlylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylarnino, carbamoyl, and ureido), amidino, imino, sulfhydryl, allcylthio, arylthio, thiocarboxylate, sulfates, alkylsulfmyl, sulfonato, sulfamoyl (S(O)2NHa), aminesulfoxide (NHS(O) or S(O)NH), sulfonamide (NHS(O)2 or S(O)2NH), nitro, -CF3, halogen, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety. An "alkylaryl" or aralkyl moiety is an alkyl moiety substituted with an aryl (e.g., methylphenyl (benzyl)). "Alkyl" also includes the side chains of natural and unnatural amino acids.
Aryl includes groups with aromaticity, including 5- and 6-membered "unconjugated", or single- ring aromatic groups that may include from one to four heteroatoms, as well as "conjugated", or multicyclic systems with at least one aromatic ring. Examples of aryl groups include phenyl, pyrrole, furan, thiophene, thiazole, isothiazole, imidazole, triazole, tetrazole, pyrazole, oxazole, isoxazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like. Furthermore, the term "aryl" includes multicyclic groups, e.g., tricyclic, bicyclic, e.g., naphthalene, benzoxazole, benzodioxazole, benzothizole, benzoimidazole, benzothiophene, methylenedioxyphenyl, quinoline, isoquinoline, napthridine, indole, benzofliran, purine, benzofuran, deazapureine, or indolizine. Those aryl groups having heteroatoms in the ring structure may also be referred to as "aryl heterocycles", "heterocycles", "heterocyclyls", "heteroaryls" or "heteroaromatics" e.g., pyridine, pyrazole, pyrimidine, fliran, isoxazole, imidazole[2,l,b]thiazole, triazole, pyrazine, benzothiophene, imidazole, or thiophene. The aromatic ring can be substituted at one or more ring positions with such substituents as described above, as for example, halogen, hydroxyl, alkyl, alkoxy, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, alkylaminocarbonyl, araUcylaminocarbonyl, alkenj'laminocarbonyl, alkylcarbonyl, arylcarbonyl, aralkylcarbonyl, alkenylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylthiocarbonyl, carboxyalkyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylainino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfliydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfmyl, sulfonate, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety. Aryl groups can also be fused or bridged with alicyclic or heterocyclic rings, which are not aromatic so as to form a multicyclic system {e.g., tetralin, methylenedioxyphenyl). "Alkenyl" includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double bond. For example, the term "alkenyl" includes straight-chain alkenyl groups {e.g., ethenyl, propenyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl, nonenyl, decenyl), branched-chain alkenyl groups, cycloallcenyl {e.g., alicyclic) groups {e.g., cyclopropenyl, cyclopentenyl, cyclohexenyl, cycloheptenyl, cyclooctenyl), alkyl or alkenyl substituted cycloallcenyl groups, and cycloalkyl or cycloalkenyl substituted alkenyl groups. The term "alkenyl" further includes alkenyl groups, which include oxygen, nitrogen, or sulfur replacing one or more hydrocarbon backbone carbons. In certain embodiments, a straight chain or branched chain alkenyl group has six or fewer carbon atoms in its backbone {e.g., C2-C6 for straight chain, C3-Ce for branched chain.) Likewise, cycloalkenyl groups may have from three to eight carbon atoms in their ring structure, and more preferably have five or six carbons in the ring structure. The term "C2-C6" includes alkenyl groups containing two to six carbon atoms.
The term "alkenyl" also includes both "unsubstituted alkenyls" and "substituted alkenyls", the latter of which refers to alkenyl moieties having substituents replacing a hydrogen on one or more hydrocarbon backbone carbon atoms. Such substituents can include, for example, alkyl groups, alkenyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfliydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfϊnyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, phenyl, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.
"Alkynyl" includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but which contain at least one triple bond. For example, "alkynyl" includes straight chain alkynyl groups {e.g., ethynyl, propynyl, butynyl, pentynyl, hexynyl, heptynyl, octynyl, nonynyl, decynyl), branched chain alkynyl groups, and cycloalkyl or cycloallcenyl substituted alkynyl groups. The term "alkynyl" further includes alkynyl groups having oxygen, nitrogen, sulfur or phosphorous atoms replacing one or more hydrocarbon backbone carbons. In certain embodiments, a straight chain or branched chain alkynyl group has six or fewer carbon atoms in its backbone {e.g., C2-C6 for straight chain, C3-C6 for branched chain). The term "C2-C6" includes alkynyl groups containing two to six carbon atoms.
The term "alkynyl" also includes both "unsubstituted alkynyls" and "substituted alkynyls", the latter of which refers to alkynyl moieties having substituents replacing a hydrogen on one or more hydrocarbon backbone carbon atoms. Such substituents can include, for example, allcyl groups, alkenyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylamiiiocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.
Unless the number of carbons is otherwise specified, "lower alkyl" includes an alkyl group, as defined above, but having from one to ten, more preferably from one to six, carbon atoms in its backbone structure. "Lower alkenyl" and "lower alkynyl" have chain lengths of, for example, 2-5 carbon atoms. As used herein, "amine" or "amino" includes compounds where a nitrogen atom is covalently bonded to at least one carbon or heteroatom. "Alkylamino" includes groups of compounds wherein nitrogen is bound to at least one additional alkyl group. Examples of alkylamino groups include benzylamino, methylamino, ethylamino, and phenethylamino. "Dialkylamino" includes groups wherein the nitrogen atom is bound to at least two additional allcyl groups. Examples of dialkylamino groups include dimethylamino and diethylamino. "Arylamino" and "diarylamino" include groups wherein the nitrogen is bound to at least one or two aryl groups, respectively. "Alkylarylamino," "alkylaminoaryl" or "arylaminoalkyl" refers to an amino group which is bound to at least one alkyl group and at least one aryl group. "Alkaminoalkyl" refers to an alkyl, alkenyl, or alkynyl group bound to a nitrogen atom which is also bound to an alkyl group.
The term "amide" or "aminocarboxy" includes compounds or moieties that contain a nitrogen atom that is bound to the carbon of a carbonyl or a thiocarbonyl group. The term includes "alkaminocarboxy" groups that include alkyl, alkenyl, or alkynyl groups bound to an amino group bound to a carboxy group. It includes arylaminocarboxy groups that include aryl or heteroaryl moieties bound to an amino group that is bound to the carbon of a carbonyl or thiocarbonyl group. The terms
"alkylaminocarboxy," "alkenylaminocarboxy," "alkynylaminocarboxy.," and "arylaminocarboxy" include moieties wherein alkyl, alkenyl, alkynyl and aryl moieties, respectively, are bound to a nitrogen atom which is in turn bound to the carbon of a carbonyl group. Amides can be substituted with substituents such as straight chain alkyl, branched allcyl, cycloalkyl, aryl, heteroaryl, or heterocycle. Substituents on amide groups may be further substituted.
"Acyl" includes compounds and moieties that contain the acyl radical (CH3CO-) or a carbonyl group. "Substituted acyl" includes acyl groups where one or more of the hydrogen atoms are replaced by for example, alkyl groups, alkynyl groups, halogens, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarboiiyl, dialkylaminocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonate, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, allcylaryl, or an aromatic or heteroaromatic moiety.
"Acylamino" includes moieties wherein an acyl moiety is bonded to an amino group. For example, the term includes alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido groups.
The term "alkoxy" or "alkoxyl" includes substituted and unsubstituted alkyl, alkenyl, and alkynyl groups covalently linked to an oxygen atom. Examples of alkoxy groups (or alkoxyl radicals) include methoxy, ethoxy, isopropyloxy, propoxy, butoxy, and pentoxy groups. Examples of substituted alkoxy groups include halogenated alkoxy groups. The alkoxy groups can be substituted with groups such as alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, cyano, amino
(including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, aryltliio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonate, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moieties. Examples of halogen substituted alkoxy groups include, but are not limited to, fluoromethoxy, difluoiOmetlioxy, trifluoromethoxy, chloromethoxy, dichloromethoxy, and trichloromethoxy.
The term "cycloalkyl" includes saturated acyclic groups (e.g., cyclopropyl, cyclopentyl, cyclohexyl, cyclohexyl, cycloheptyl, cyclooctyl). Preferred cycloalkyls have from three to eight carbon atoms in their ring structure, and more preferably have five or six carbon atoms in the ring structure. Cycloalkyls includes both "unsubstituted cycloalkyls" and "substituted cycloalkyls", the latter of which refers to replacing a hydrogen on one or more of the carbons in the ring structure. Such substituents can include, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, aUcylaminocarbonyl, dialkylaminocarbonyl, allcylthiocarbonyl, alkoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, aryltliio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonate, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, allcylaryl, or an aromatic or heteroaromatic moiety. The terms "heterocyclyl", "heterocycle" or "heterocyclic group" include closed ring structures, e.g., 3, 4, 5, 6, 7, 8, 9, or 10-membered rings, which include one or more heteroatoms. "Heteroatom" includes atoms of any element other than carbon or hydrogen. Examples of heteroatoms include nitrogen, oxygen, or sulfur. Heterocyclyl groups or heterocycles can be saturated or unsaturated and include pyrrolidine, pyrazine, pyrimidine, oxolane, 1,3-dioxolane, thiolane, tetrahydrofuran, tetrahydropyran, piperidine, piperazine, pyrrolidine, morpholine, lactones, lactams such as azetidinones and pyrrolidinones, sultams, sultones, and protected heterocycles, such as tert-butoxy protected piperazine, in which protecting groups can be removed for further functionalization. Heterocyclic groups such as pyrrole and furan can have aromatic character. They include fused ring structures such as quinoline and isoquinoline. Other examples of heterocyclic groups include pyridine and purine. The heterocyclic ring can be substituted at one or more positions with such substituents as described above, as for example, halogen, hydroxyl, acetal, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, alkoxycarbonyl, carbonylalkoxy, aminocarbonyl, alkyltliiocarbonyl, alkoxyl, cyano, amino (including allcyl amino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, aiylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfliydryl, alkylthio, arylthio, tliiocarboxylate, sulfates, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, phenyl, heterocyclyl, aryl or heteroaryl. Heterocyclic groups can also be substituted at one or more constituent atoms with, for example, a lower allcyl, a lower alkenyl, a lower alkoxy, a lower alkylthio, a lower alkylamino, a lower alkylcarboxyl, a nitro, a hydroxyl, -CF3, or -CN, or the like. Substituents on a heterocyclic group can be further substituted e.g., with halogen, amide, hydroxyl, or alkoxy.
The term "thioalkyl" includes compounds or moieties which contain an alkyl group connected with a sulfur atom. The thioalkyl groups can be substituted with groups such as allcyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, allcoxyl, cyano, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and allcylarylamino), acylamino (including allcylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfliydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moieties.
The term "carbonyl" or "carboxy" includes compounds and moieties which contain a carbon connected with a double bond to an oxygen atom. Examples of moieties containing a carbonyl include, but are not limited to, aldehydes, ketones, carboxylic acids, amides, esters, anhydrides, etc.
The term "thiocarbonyl" or "thiocarboxy" includes compounds and moieties which contain a carbon connected with a double bond to a sulfur atom.
The term "hydroxy" or "hydroxyl" includes groups with an -OH or -O".
The term "halogen" includes fluorine, bromine, chlorine, iodine, etc. The term "perhalogenated" generally refers to a moiety wherein all hydrogens are replaced by halogen atoms.
The term "C1-C6" includes one to six carbon atoms (Cl, C2, C3, C4, C5 or C6). The term "C2- C6" includes two to six carbon atoms (C2, C3, C4, C5 or C6). The term "C3-C6" includes three to six carbon atoms (C3, C4, C5 or C6). The term "C3-C8" includes two to eight carbon atoms (C3, C4, C5, C6, C7 or C8). The term "C5-C8" includes five to eight carbon atoms (C5, C6, C7 or C8).
It should be noted that any heteroatom or carbon atom with unsatisfied valences is assumed to have the hydrogen atom to satisfy the valences. The compounds described herein may have asymmetric centers. Compounds of the present invention containing an asymmetrically substituted atom may be isolated in optically active or racemic forms. It is well known in the art how to prepare optically active forms, such as by resolution of racemic forms or by synthesis from optically active starting materials. Many geometric isomers of olefins, C=N double bonds, and the like can also be present in the compounds described herein, and all such stable isomers are contemplated in the present invention. Cis and trans geometric isomers of the compounds of the present invention are described and may be isolated as a mixture of isomers or as separated isomeric forms. All chiral, diastereomeric, racemic, and geometric isomeric forms of a structure are intended, unless the specific stereochemistry or isomeric form is specifically indicated. All tautomers of shown or described compounds are also considered to be part of the present invention. It is to be understood accordingly that the isomers arising from such asymmetry (e.g., all enantiomers and diastereomers) are included within the scope of the invention, unless indicated otherwise. Such isomers can be obtained in substantially pure form by classical separation techniques and by stereochemically controlled synthesis. Furthermore, the structures and other compounds and moieties discussed in this application also include all tautomers thereof. Alkenes can include either the E- or Z-geometry, where appropriate.
The temi "substituted," as used herein, means that any one or more hydrogens on the designated atom is replaced with a selection from the indicated group, provided that the designated atom's normal valency is not exceeded, and that the substitution results in a stable compound. When a substituent is keto (i.e., =0), then 2 hydrogens on the atom are replaced. Keto substituents are not present on aromatic moieties. Ring double bonds, as used herein, are double bonds that are formed between two adjacent ring atoms (e.g.,C=C, C=N, OrN=N). "Stable compound" and "stable structure" are meant to indicate a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and formulation into an efficacious therapeutic agent.
When a bond to a substituent is shown to cross a bond connecting two atoms in a ring, then such substituent may be bonded to any atom in the ring. When a substituent is listed without indicating the atom via which such substituent is bonded to the rest of the compound of a given formula, then such substituent may be bonded via any atom in such substituent. Combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.
In the specification, the singular forms also include the plural, unless the context clearly dictates otherwise.
A "pharmaceutically acceptable salt" or "salt" of the disclosed compound is a product of the disclosed compound that contains an ionic bond, and is typically produced by reacting the disclosed compound with either an acid or a base, suitable for administering to a subject. Pharmaceutically acceptable salt can include, but is not limited to, acid addition salts including hydrochlorides, hydiObroinides, phosphates, sulphates, hydrogen sulphates, alkylsulphonates, arylsulphonates, acetates, benzoates, citrates, maleates, fumarates, succinates, lactates, and tartrates; alkali metal cations such as Na, K, Li, alkali earth metal salts such as Mg or Ca, or organic amine salts. A "pharmaceutical composition" is a formulation containing the disclosed compounds in a form suitable for administration to a subject. In one embodiment, the pharmaceutical composition is in bulk or in unit dosage form. The unit dosage form is any of a variety of forms, including, for example, a capsule, an IV bag, a tablet, a single pump on an aerosol inhaler, or a vial. The quantity of active ingredient (e.g., a formulation of the disclosed compound or salts thereof) in a unit dose of composition is an effective amount and is varied according to the particular treatment involved. One skilled in the art will appreciate that it is sometimes necessary to make routine variations to the dosage depending on the age and condition of the patient. The dosage will also depend on the route of administration. A variety of routes are contemplated, including oral, pulmonary, rectal, parenteral, transdermal, subcutaneous, intravenous, intramuscular, intraperitoneal, intranasal, and the like. Dosage forms for the topical or transdermal administration of a compound of this invention include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. In one embodiment, the active compound is mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that are required.
The present invention also provides pharmaceutical formulations comprising a compound of Formula I, II or III in combination with at least one pharmaceutically acceptable excipient or carrier. As used herein, "pharmaceutically acceptable excipient" or "pharmaceutically acceptable carrier" is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration. Suitable carriers are described in "Remington: The Science and Practice of Pharmacy, Twentieth Edition," Lippincott Williams & Wilkins, Philadelphia, PA., which is incorporated herein by reference. Examples of such carriers or diluents include, but are not limited to, water, saline, Ringer's solutions, dextrose solution, and 5% human serum albumin. Liposomes and non-aqueous vehicles such as fixed oils may also be used. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated. Supplementary active compounds can also be incorporated into the compositions.
Methods for formulation are disclosed in PCT International Application PCT/US02/24262 (WO03/011224), U.S. Patent Application Publication No. 2003/0091639 and U.S. Patent Application Publication No. 2004/0071775, each of which is incorporated by reference herein. A compound of Formula I, II or III is administered in a suitable dosage form prepared by combining a therapeutically effective amount (e.g., an efficacious level sufficient to achieve the desired therapeutic effect through inhibition of tumor growth, killing of tumor cells, treatment or prevention of cell proliferative disorders, etc.) of a compound of Formula I, II or III (as an active ingredient) with standard pharmaceutical earners or diluents according to conventional procedures (i.e., by producing a pharmaceutical composition of the invention). These procedures may involve mixing, granulating, and compressing or dissolving the ingredients as appropriate to attain the desired preparation, m another embodiment, a therapeutically effective amount of a compound of Formula I, II or III is administered in a suitable dosage form without standard pharmaceutical carriers or diluents.
Pharmaceutically acceptable carriers include solid carriers such as lactose, terra alba, sucrose, talc, gelatin, agar, pectin, acacia, magnesium stearate, stearic acid and the like. Exemplary liquid earners include syrup, peanut oil, olive oil, water and the like. Similarly, the carrier or diluent may include time- delay material known in the art, such as glyceryl monostearate or glyceryl distearate, alone or with a wax, ethylcellulose, hydroxypropylmethylcellulose, methylmethacrylate or the like. Other fillers, excipients, flavorants, and other additives such as are known in the art may also be included in a pharmaceutical composition according to this invention.
The pharmaceutical compositions containing active compounds of the present invention may be manufactured in a manner that is generally known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping, or lyophilizing processes. Pharmaceutical compositions may be formulated in a conventional manner using one or more physiologically acceptable carriers comprising excipients and/or auxiliaries which facilitate processing of the active compounds into preparations that can be used pharmaceutically. Of course, the appropriate formulation is dependent upon the route of administration chosen. A compound or pharmaceutical composition of the invention can be administered to a subject in many of the well-known methods currently used for chemotherapeutic treatment. For example, for treatment of cancers, a compound of the invention may be injected directly into tumors, injected into the blood stream or body cavities or taken orally or applied through the skin with patches. For treatment of psoriatic conditions, systemic administration (e.g., oral administration), or topical administration to affected areas of the skin, are preferred routes of administration. The dose chosen should be sufficient to constitute effective treatment but not so high as to cause unacceptable side effects. The state of the disease condition (e.g., cancer, psoriasis, and the like) and the health of the patient should be closely monitored during and for a reasonable period after treatment.
The present invention also provides a method for the treatment of cell proliferative disorders in a mammal comprising administering to a mammal in need of such treatment, an therapeutically effective amount of a compound Formula I, II or III. The invention further provides the use of a compound of Formula I, II or III for the preparation of a medicament useful for the treatment of a cell proliferative disorder. In one embodiment, the invention provides for the treatment of cancer or precancerous conditions in a mammal comprising administering to a mammal in need of such treatment, an therapeutically effective amount of a compound of Formula I, II or III.
An effective amount of a compound of Formula I, II or III is used in a method to treat a cell proliferative disorder in a mammal without affecting normal cells of the mammal. For example, a therapeutically effective amount of a compound of Formula I, II or III is used in a method for treating cancer in a mammal by inducing cell death in cancer cells without affecting normal cells in the mammal. Cell death can occur by either apoptosis or necrosis mechanisms. In another example, administration of a therapeutically effective amount of a compound of Formula I, II or III induces sustained (non-transient) activity (e.g. elevation of the level) of a checkpoint molecule in abnormally proliferating cells without affecting checkpoint molecule activity in normal cells. For example, administration of a therapeutically effective amount of a compound of Formula I, II or III induces activation of E2F1 checkpoint pathway in abnormally proliferating cells without significantly affecting normal cells. In another example, administration induces sustained E2F pathway activity (e.g. elevation of E2F levels) in cancer cells without affecting E2F pathway activity (e.g. E2F levels) in normal cells. Methods of measuring induction of E2F activity and elevation of E2F levels are as shown in Li et al, (2003) Proc Natl Acad Sd USA. 100(5): 2674-8. In another embodiment, administration of a therapeutically effective amount of a compound of Formula I, II or III induces cell death in abnormally proliferating cells without inducing cell death in normal cells.
The invention also provides a method of protecting against a cell proliferative disorder in a mammal by administering a therapeutically effective amount of a compound of Formula I, II or III to a mammal. The invention also provides the use of a compound of Formula I, II or III for the preparation of a medicament useful for the prevention of a cell proliferative disorder. In one embodiment, the invention provides for the prevention of cancer in a mammal comprising administering to a mammal in need of such treatment, a therapeutically effective amount of a compound of Formula I, II or III. The compounds of the invention are administered in the form of pharmaceutical compositions, e.g., as described herein.
The mammal can be e.g., any mammal, e.g., a human, a primate, mouse, rat, dog, cat, cow, horse, pig. For example, the mammal is a human.
As used herein, the term "cell proliferative disorder" refers to conditions in which the unregulated and/or abnormal growth of cells can lead to the development of an unwanted condition or disease, which can be cancerous or non-cancerous, for example a psoriatic condition. As used herein, the terra "psoriatic condition" refers to disorders involving keratinocyte hyperproliferation, inflammatory cell infiltration, and cytokine alteration.
In one embodiment, the cell proliferation disorder is cancer. As used herein, the term "cancer" includes solid tumors, such as lung, breast, colon, ovarian, prostate, malignant melanoma, non-melanoma skin cancers, as well as hematologic tumors and/or malignancies, such as childhood leukemia and lymphomas, multiple myeloma, Hodgkin's disease, lymphomas of lymphocytic and cutaneous origin, acute and chronic leukemia such as acute lymphoblastic, acute myelocytic or chronic myelocytic leukemia, plasma cell neoplasm, lymphoid neoplasm and cancers associated with AIDS. In addition to psoriatic conditions, the types of proliferative diseases which may be treated using the compositions of the present invention are epidermic and dermoid cysts, lipomas, adenomas, capillary and cutaneous hemangiomas, lymphangiomas, nevi lesions, teratomas, nephromas, myofibromatosis, osteoplastic tumors, and other dysplastic masses and the like. In one embodiment, proliferative diseases include dysplasias and disorders of the like.
The invention also provides methods for the synthesis of the compounds of Formula I, II, III. In one embodiment, the present invention provides a method for the synthesis of compounds according to scheme 1-2 and protocols A-B.
Throughout the description, where compositions are described as having, including, or comprising specific components, it is contemplated that compositions also consist essentially of, or consist of, the recited components. Similarly, where methods or processes are described as having, including, or comprising specific process steps, the processes also consist essentially of, or consist of, the recited processing steps. Further, it should be understood that the order of steps or order for performing certain actions is immaterial so long as the invention remains operable. Moreover, two or more steps or actions can beconducted simultaneously.
The synthetic processes of the invention can tolerate a wide variety of functional groups, therefore various substituted starting materials can be used. The processes generally provide the desired final compound at or near the end of the overall process, although it may be desirable in certain instances to further convert the compound to a pharmaceutically acceptable salt, ester, or prodrug thereof.
Schemes 1-2 and protocols A-B depicts a general synthesis for a family of compounds of the invention. Compounds encompassed in the invention can be produced according to this or other synthetic processes without departing from the spirit or essential characteristics of the invention. All changes that come within the meaning and range of equivalency of the compounds are intended to be embraced herein. Thus, it is expected that one of ordinary skill in the art would know how to alter the synthetic schemes illustrated herein so as to produce a desired substitution pattern on a compound, produce an increased or decreased product yield, minimize reaction side products, eliminate the use of dangerous or toxic chemical reactants, and/or to produce a desired amount of product (e.g., scale-up reaction size for commercial manufacture), and the like.
The invention will be further described in the following examples, which do not limit the scope of the invention described in the claims.
EXAMPLES
GENERAL
Compounds of the invention can be prepared in a variety of ways, some of which are known in the art. In general, the compounds of (lie present invention can be prepared from commercially available starting materials, compounds known in the literature, or from readily-prepared intermediates, by employing standard synthetic methods and procedures known to those skilled in the art, or which will be apparent to the skilled artisan in light of the teachings herein. Standard synthetic methods and procedures for the preparation of organic molecules and functional group transformations and manipulations can be obtained from the relevant scientific literature or from standard textbooks in the field. Although not limited to any one or several sources, classic texts such as Smith, M. B.; March, J. March's Advanced Organic Chemistry: Reactions, Mechanisms, and Structure, 5th ed.; John Wiley & Sons: New York, 2001; and Greene, T. W.; Wilts, P.G. M. Protective Groups in Organic Synthesis, 3rd.; JoIm Wiley & Sons: New- York, 1999, incorporated by reference herein, are useful and recognized reference textbooks of organic synthesis known to those in the art. The following descriptions of synthetic methods are designed to illustrate, but not limit, general procedures for the preparation of compounds of the invention.
The compounds of this invention with general formula (I) may be prepared according to the following schemes from commercially available starting materials or starting materials, which can be prepared using literature procedures. These schemes show the preparation of representative compounds of this invention.
Figure imgf000019_0001
G)
The compounds of the present invention can be prepared from the reaction of 1,2-quinone alcohol (II) and appropriate intermediate/commercial reagents as shown in Scheme 1.
Scheme 1
(H) (HI) (IV)
R'"-NCO, K2CO3 DMF
Figure imgf000020_0002
Compounds of formula (IV) where R' and R' ' are siibstituents on either primary or secondary amines reagents, can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 1. 1,2-Quinone mesylate (III) can be conveniently prepared by treating 1,2-quinone alcohol (II) with methanesulfonyl chloride, tertiary amine bases such as triethyl amine, diisoproylethyl amine in solvents such as dichloromethane for 0.5-4 hours at 00C to ambient temperatures. The 1,2-quinone mesylate (III) is treated with primary and seconday amines, tertiary amine bases such as triethyl amine, diisoproylethyl amine, dimethylamino pyridine in solvents such as dimethylsulfoxide for 0.5-4 hours at ambient temperatures to 800C to provide 1,2-quinone amines (IV). Many primary and secondary amines are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
The 1,2-quinone amines (IV) formed from the reaction of primary amines with the 1,2-quinone mesylate (III) could be further functionalized with acid chlorides and carboxylic acids to form amides, sulfonyl chlorides to form sulfonamides, isocyanates to form ureas, carbamoyl chlorides to form carbamates, sulfonyl isocyanates to form sulfonyl ureas, epoxides to form amino alcohols, heterocyclic halides to form amino heterocycles, anhydrides to form keto alkyl or aryl acids, alkyl or aryl bromides, iodides to form amino alkyls or amino aryls. The methods to carry out the above ansformations are described in reference text's such as Comprehensive Organic Transformations, Richard C. Larock, Second Edition, Wiley- VCH, 1999; Protective Groups in Organic Synthesis, Third Edition, Theodora W. Greene and Peter M. Wuts, Wiley Interscience, 1999; The Practice of Peptide Synthesis, M. Bodanszky and A. Bodanzsky, Springer- Verlag, 1984.
Compounds of formula (V) where R'" are alkyl or aryl can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route'is illustrated in Scheme 1. 1,2- Quinone carbamates (V) can be conveniently prepared by treating 1,2-quinone alcohol (II) with alkyl or aryl isocyanates, bases such as potassium carbonate in solvents such as DMF (dimethylfoπnamide) for 1- 4 hours at ambient temperatures to 60 0C. Alternatively bases such as sodium carbonate, sodium bicarbonate, triethyl amine, diisoproylethyl amine can also be used. Many isocyanates are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
Compounds of formula (VI) can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 1. 1,2-Quinone aryl ethers (VI) can be conveniently prepared by treating 1,2-quinone alcohol (II) with ρyridine-3-ol, under mitsunobu conditions using triphenyl phosphine, DEAD (diethylazidodicarboxylate) in solvents such as THF (tetrahydrofuran) for 6-24 hours at ambient temperatures. Alternatively activating reagents such as DIAD, DBAD can also be used.
Scheme 2
HCX_,,OH B
1 ,1 '-Bis{di(f-butylphosphine)ferrocene]PdCI
K2CO3, 1 ,4-Doixane
Figure imgf000021_0001
Figure imgf000021_0002
Figure imgf000021_0003
(IX)
The compounds of the present invention can be prepared from the reaction of 1,2-quinone (VII) and appropriate intermediate/commercial reagents as shown in Scheme 2. Compounds of formula (VIII) can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 2. Bromo- 1,2-quinone (VII) is treated with a palladium catalyst such as l,r-bis{di(t-butylphosphine)ferrocene]PdCl, boronic acids such as phenyl boronic acid, bases such as potassium carbonate in solvents such as 1,4-dioxane for 2-8 hours at 60-100 0C to provide phenyl substituted 1,2-quinone (VIII). Alternatively bases such as sodium carbonate, cesium carbonate can also be used. Many aromatic boronic acids are commercially available or readily prepared by methods described in the literature and known to those skilled in art. (Prieto M. et al, JOC, 2004, 69(20), 6812) Compounds of formula (IX) can be conveniently prepared by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 2. Bromo- 1,2-quinone (VII) is treated with amines such as piperidine, bases such as potassium carbonate in solvents such as 1,4-dioxane for 12- 24 hours at 60-110 0C to provide amine substituted 1,2-quinone (VIII). Alternatively bases such as sodium carbonate, cesium carbonate and palladium (0) catalysts such as bis(tri-te?^-butyl phosphine)palladium(O) can also be used. (J. Am. Chem. Soc, 2002, 124, 14844) Many secondary amines are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
Scheme 3
Figure imgf000022_0001
Compounds of formula (XI-XIII) can be conveniently prepared starting with 1,2-quinone (X) by a variety of methods familiar to those skilled in the art. One common route is illustrated in Scheme 3.
1,2-Quinones oxathiine (XI) can be conveniently prepared in two steps. Step(i) 1,2-quinone (X) is treated with propane-l,3-thioalcohols (XVI), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures. Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XI). Alternatively bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i). Acid such as trifJuoroacetic acid in solvents such as dichloromethane can also be used in step (ii). Many propane-l,3-thioalcohols (XVI) are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
1 ,2-Quinones oxathiine (XII) can be conveniently prepared in two setps. Step(i) 1,2-quinone (X) is treated with protected 1,2-thioalcohol (XVII), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures. Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XII). Alternatively bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i). Acid such as trifluoroacetic acid in solvents such as dichloromethane can also be used in step (ii). Many 1,2-thioalcohols are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
1,2-Quinones oxathiine (XlII) where R"" is methyl or isopropyl group can be conveniently prepared in two steps using the 1,2-thioacohols (XV). The thioalcohols (XV) where Y is a triphenylsilane protecting group and R"" is methyl or isopropyl can be prepared by treating epoxides (XIV) with triphenylsilanethiol, tertiary amine bases such as triethylamine, diisopropylethyl amine in solvents such as tetrahydrofuran for 1-5 hours at ambient temperatures. Alternatively, thioalcohols (XV) where Y is hydrogen can be prepared by treating epoxides (XIV) with thiol sources such as sodium hydrosulfide, sodium sulfide in solvents such as isopropanol for 1-5 hours at ambient temperatures. The 1,2- thioalcohols (XV) are treated with 1,2-quinone (X) to prepare 1,2-quinones oxathiine (XIII) in a two-step procedure. Step(i) 1,2-quinone (X) is treated with 1,2-thioalcohol (XV), bases such as potassium carbonate in solvents such as acetonitrile for 0.5-4 hours at ambient temperatures. Step (ii) the crude product from step (i) is treated with acids such as p-toluenesulfonic acid in solvents such as acetonitrile for 4-24 hours at ambient temperatures to provide 1,2-quinones oxathiine (XIII). Alternatively bases such as triethyl amine, diisopropylethyl amine, cesium carbonate, sodium carbonate, sodium bicarbonate and solvents such as dichloromethane, tetrahydrofuran can also be used in step (i). Acids such as trifluoroacetic acid in solvents such as dichloromethane can also be used in step (ii). Many epoxides are commercially available or readily prepared by methods described in the literature and known to those skilled in art.
Example 1: Scheme Ia
Figure imgf000023_0001
Synthesis of (5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-Z>] [l,4]oxathiin-3-yl)methyl methanesulfonate
Figure imgf000024_0001
To a solution of 3-(hydroxymethyl)-2,3-diliydronaphtho[2,l-έ][l,4]oxathiine-5,6-dione (1.0 g, 3.81 rniiiol) in dichloromethane (10 noL) was added triethylamine (1.0 mL, 7.63 mmol) and methanesulfonyl chloride (0.60 mL, 7.63 mmol). The resulting mixture was stirred for 1.5 hours at room temperature. Product was collected by filtration, washed with dichloromethane (10 mL) and dried under reduced pressure to provide the product as a purple solid (l.lg, 85 %). M.p. = 230-232 0C; 400 MHz 1H NMR (DMSOd6) δ: 7.89 (d, J= 6.8 Hz, IH), 7.75 (m, 2H), 7.56 (m, IH), 4.81 (m, IH), 4.65 (m, IH), 4.54 (m, IH), 3.05 (m, 2H), 1.16 (m, 3H); LCMS: 341 [M+H].
Example 2: Protocol A
Synthesis of ethyl 4-[(5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-Z>] [l,4]oxathiin-3- yl)methyl]piperazine-l-carboxylate (Compound 1)
Figure imgf000024_0002
To a solution of (5,6-dioxo-2,3,5,6-tetrahydronaphtlio[2,l-έ][l,4]oxatliiin-3-yl)methyl methanesulfonate (0.15 g, 0.44 mmol) in DMSO (1.5 mL) was added ethyl ρiperazine-1-carboxylate (0.065 mL, 0.88 mmol) and triethylamine (0.12 mL, 0.88 mmol). The reaction mixture was shaken at 50 0C for 2 hours. The crude product was purified by reverse phase HPLC to give the desired product as a purple solid (0.015 g, 5%). M.p. = 185-187 0C; 300 MHz 1H NMR (CDCl3) δ: 8.04 (d, J= 7.2 Hz, IH), 7.66 (m, 2H), 7.48 (t, J= 7.2 Hz, IH), 4.66 (m, IH), 4.15 (m, 2H), 3.51 (m, 4H), 3.23 (m, IH), 3.03 (m, IH), 2.83 (m, 2H), 2.54 (m, 4H), 1.27 (m, 3H); LCMS: 403 [M+H].
Synthesis of 3-{[4-(hydroxymethyl)piperidin-l-yl]methyI}-2,3-dihydronaphtho[2,l-6][l,4]oxathilne-
Figure imgf000024_0003
Compound 2 was synthesized using piperidin-4-ylmethanol and conditions outlined in general procedure A. (0.020 g, 13 %). M.p. = 200-202 0C; 300 MHz 1H NMR (CDCl3) δ: 8.04 (d, J= 7.5 Hz, IH), 7.67 (m, 2H), 7.48 (t, J= 7.8 Hz, IH), 5.31 (s, IH), 4.64 (m, IH)5 3.51 (d, J= 6.3 Hz, 2H), 3.23 (d, J = 14.1 Hz, IH), 3.0 (m, 2H), 2.85 (m, 2H), 2.19 (m, 2H)3 1.75 (m, 2H), 1.52 (m, 2H), 1.29 (m, 2H); LCMS: 360 [M+H].
Synthesis of 3-f(4-hydroxypiperidin-l-yI)methyl]-2,3-dihydronaphtho[2,l-6][l,4]oxathiine-5,6- dione (Compound 3)
Figure imgf000025_0001
Compound 3 was synthesized using piperidin-4-ol and conditions outlined in general procedure A. (0.018 g, 12 %). M.p. = 98-100 0C; 300 MHz 1H NMR (CDCl3) δ: 8.04 (d, /= 7.2 Hz, IH), 7.66 (m, 2H), 7.48 (t, J= 7.8 Hz, IH)55.30 (s, IH), 4.64 (m, IH), 3.75 (m, IH), 3.23 (d, J= 13.2 Hz, IH), 2.98 (m, IH), 2.83 (m, 2H), 2.38 (m, 2H), 1.91 (m, 2H), 1.61 (m, 4H); LCMS: 346 [M+H].
Synthesis of 3-{[(2,2-dimethoxyethyl)(methyl)aminol methyI}-2,3-dihydronaphtho [2,1-
Z>][l,4]oxathiine-5,6-dione (Compound 4)
Figure imgf000025_0002
Compound 4 was synthesized using (2,2-dimemoxyethyl)methylamine and conditions outlined in general procedure A (0.021 g, 13%). M.p. = 80-82 0C; 400 MHz 1H NMR (CDCl3) δ: 8.04 (d, J= 8.0 Hz, IH), 7.72 (d, J= 7.6, IH), 7.62 (t, J = 7.6 Hz, IH), 7.46 (t, J= 7.6, IH), 4.63 (m, IH), 4.47 (m, IH), 3.41 (m, IH), 3.36 (s, 3H), 3.35 (s, 3H), 3.23 (d, J= 13.6 Hz, IH), 3.03-286 (m, 4H), 2.67 (m, 2H), 2.46 (s, 3H); LCMS: 364 [M+H].
Synthesis of 3-{[4-(4-fluorophenyl)piperazin-l-yl]methyI}-2,3-dihydronaphthof2,l-Z>][l,4]oxathiine- ompound 5)
Figure imgf000025_0003
Figure imgf000025_0004
Compound 5 was synthesized using l-(4-fluorophenyl)piperazine and conditions outlined in general procedure A (0.026 g, 14%). M.p. = 180-1820C; 300 MHz 1H NMR (CDCl3) δ: 8.05 (d, J= 7.5 Hz, IH), 7.73 (d, J= 7.2, IH), 7.64 (t, J= 7.2 Hz, IH), 7.48 (t, J= 7.5, IH), 6.96 (m, 2H), 6.89 (m, 2H), 4.69 (m, IH), 3.26 (d, J= 13.8 Hz, IH), 3.15 (m, 4H), 3.05 (m, IH), 2.92 (m, 2H), 2.77 (m, 4H); LCMS: 425 [M+H]. Synthesis of 3-{[(2-phenylethyl)amino]methyl}-2,3-dihydronaphthof2,l-ύ][l,4]oxathiine-5,6-dione
Figure imgf000026_0001
Compound 6 was synthesized using (2-phenylethyl)amine and conditions outlined in general procedure A (0.027 g, 17%). M.p. = 80-82 0C; 400 MHz 1H NMR (CDCl3) δ: 8.01 (m, IH), 7.41 (m, 2H), 7.30 (t, /= 6.0, IH), 7.24 (m, 2H), 7.14 (m, 2H), 6.91 (m, IH), 4.57 (m, IH), 3.87 (m, IH), 3.50 (m, IH), 3.08 (m, 2H), 2.83 (m, 2H), 2.59 (m, 2H); LCMS: 366 [M+H].
Synthesis of 3-[(benzyIamino)methyl]-2,3-dihydronaphtho[2,l-/>][l,4]oxathiine-5,6-dione (Compound 7)
Figure imgf000026_0002
Compound 7 was synthesized using benzylamine and conditions outlined in general procedure A (0.018 g, 12%). M.p. = 60-62 0C; 400 MHz 1H NMR (CDCl3) δ: 8.01 (d, J= 5.7, IH), 7.65 (m, 2H), 7.42 (m, IH), 7.19 (m, 3H), 7.11 (m, 2H), 4.61 (m, IH), 3.69 (m, IH), 3.52 (m, IH), 3.18 (m, 2H), 2.53 (m, 2H); LCMS: 352 [M+H].
Synthesis of 2-{4-[(5,6-dioxo-2,3,5,6-tetrahydronaphthof2,l-*l[l,4]oxathiin-3-yI)methyl]piperazin- l-yI}-iV-isopropylacetamide (Compound 8)
Figure imgf000026_0003
Compound 8 was synthesized using N-isopropyl-2-piperazin-l-ylacetamide and conditions outlined in general procedure A (0.022 g, 12%). M.p. = 85-87 0C; 300 MHz 1H ΝMR (CDCl3) δ: 8.04 (d, J= 7.2 Hz, IH), 7.67 (m, 2H), 7.48 (t, J= 7.5 Hz, IH), 6.89 (bd, J = 7.2 Hz, IH), 4.66 (m, IH), 4.11 (m, IH), 3.22 (d, J= 13.2, IH), 3.03 (m, IH), 2.99 (s, 2H)5 2.83 (m, 2H), 2.64 (m, 8H), 1.17 (m, 6H); LCMS: 430 [M+H].
Synthesis of 3-(l,4-dioxa-8-azaspirof4.5]dec-8-yImethyl)-2,3-dihydronaphtho[2,l-61fl,4]oxathiine-
5,6-dione (Compound 9)
Figure imgf000027_0001
Compound 9 was synthesized using l,4-dioxa-8-azaspiro[4.5]decane and conditions outlined in general procedure A (0.022 g, 13%). M.p. = 202-2040C; 300 MHz 1H NMR (CDCl3) δ: 8.04 (d, J= 7.5 Hz, IH), 7.66 (m, 2H), 7.47 (t, J= 7.5 Hz, IH), 3.96 (m, IH), 4.11 (m, 4H), 3.23 (d, J= 13.2, IH), 3.01 (m, IH), 2.83 (in, 2H), 2.69 (m, 4H), 1.77 (t, J= 5.7, 4H); LCMS: 388 [M+H].
Example 3: Scheme II
Figure imgf000027_0002
Example 4: Protocol B
Synthesis of (5,6-dioxo-2,3,5,6-tetrahydronaphthof2,l-*]fl,4]oxathiin-3-yl)methyl (4- fluorophenyl)carbamate (Compound 10)
Figure imgf000027_0003
To a solution of 3-(liydroxymetliyl)-2,3-diliydronaplitho[2,l-έ][l,4]oxatliiine-5,6-dione (0.13 g, 0.50 miiiol) in N,N-dimethylformaniide (1.5 inL) was added l-fiuoro-4-isocyaiiatobenzeiie (0.024 niL, 0.55 inmol) and potassium carbonate (0.026 g, 0.50 mmol). The mixture was stirred at 400C for 3 hours. The reaction mixture was filtered and the filtrate concentrated under reduced pressure. The crude mixture was purified by flash column chromatography (SiO2, 10% methanol in EtOAc) to give the product as a purple solid (0.051 g, 26 %). M.p. = 235-237 0C; 300 MHz 1H NMR (DMSO-d6) δ: 9.89 (s, IH), 7.89 (d, J = 7.5, IH), 7.71 (br. s, 2H), 7.50 (m, 3H), 7.12 (m, 2H), 4.78 (m, IH), 4.53 (m, 2H), 3.18 (m, 2H); LCMS: 400 [M+H].
Synthesis of (5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-δ] fl,4]oxathiin-3-yI)methyl phenylcarbamate
(Compound 11)
Figure imgf000028_0001
Compound 11 was synthesized using isocyanatobenzene and conditions outlined in general procedure B. (0.046 g, 24 %). M.p. = 250-252 0C; 400 MHz 1H NMR (DMSOd6) δ: 9.83 (s, IH), 7.87 (d, J = 7.6, IH), 7.72 (m, 2H), 7.51 (m, IH), 7.45 (d, J= 8, 2H), 7.27 (m, 2H), 6.98 (m, IH), 4.77 (m, IH), 4.52 (m, 2H), 3.16 (m, 2H); LCMS: 382 [M+H].
Synthesis of (5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-6]fl,4]oxathiin-3-yI)methyI isopropylcarbamate (Compound 12)
Figure imgf000028_0002
Compound 12 was synthesized using 2-isocyanatopropane and conditions outlined in general procedure B. (0.055 g, 32 %). M.p. = 218-2200C; 300 MHz 1H NMR (CDCl3) δ: 8.04 (d, J = 7.5, IH), 7.74 (d, /= 7.5, IH), 7.64 (t, J= 7.5, IH), 7.48 (m, IH), 4.67 (br. s, IH), 4.48 (m, 2H), 3.84 (br. m, IH), 3.10 (m, 2H), 1.18 (d, J= 6.0, 6H); LCMS: 348 [M+H].
S 13)
Figure imgf000028_0003
To a solution of naphthalene- 1,2-dione (1.5 g, 9.5 mmol) in acetonitrile (50 lnL) was added 3- mercaptohexaii-1-ol (1.6 g, 11.9 mmol) followed by the addition of diisopropyletliylamine (1.65 niL, 9.5 mmol). The mixture was stirred at room temperature for 30 minutes. The solvent was removed under reduced pressure and the residue dissolved in ethyl acetate (50 niL). The organic layer was washed with water (30 mL), dried with sodium sulfate and concentrated under reduced pressure. The resulting residue was dissolved in acetonitrile (35 mL) and reacted with p-toluenesulfonic acid (1.9 g). The reaction mixture was stirred at room temperature for 40 min and solvent removed under reduced pressure. Crude product was purified by flash column (5% EtOAc in hexane to 15% EtOAc in hexanes) to give product as purple solid (0.170 g). M.p. = 74-75 0C (decomposition); 400 MHz 1H NMR (DMSO-dfi) δ: 7.88 (d, J = 7.2 Hz, IH), 7.73 (m, 2H), 7.56 (m, IH), 5.08 (m, IH), 4.67 (m, IH), 3.58 (m, IH), 1.40-1.82 (m, 6H), 0.89 (brt, 3H); LCMS: 289 [M+H].
Synthesis of 3-methyl-9-phenyl-2,3-dihydronaphtho[2,l-A][l,4]oxathiin (Compound 14)
1,1'-Bis{di((-butylphosphine)ferrocene]PdCI K2CO3, 1 ,4-Doixane, 900C, 6 h ?
Figure imgf000029_0002
Figure imgf000029_0001
To a solution of 9-bromo-3-methyl-2,3-diliydronaphtho[2,l-δ][l,4]oxathiine-5,6-dione (0.1 g, 0.31 rnniol) in. 1,4-dioxane (1.0 mL) was added phenylboronic acid (0.056 g, 0.459 mmol), potassium carbonate (0.118 g, 0.857 mmol) and l,l '-bis[di(/-butylphosphine)ferrocene]PdCl (0.02 g, 0.031 mmol). The reaction mixture was heated at 900C for 6 hours. The resulting mixture was filtered and solvent removed under reduced pressure. The crude mixture was purified by flash column chromatography (SiO2, 16% EtOAc in hexanes) to give the product as a purple solid (0.024 g, 20%). M.p. = 190-192 0C; 400 MHz 1H NMR (CDCl3) δ: 8.11 (d, J= 1.6, IH), 7.93 (d, J= 1.6, IH), 7.66 (m, 3H), 7.45 (m, 3H), 4.70 (m, IH), 3.11 (d,J= 13.2, IH), 2.94 (m, IH), 1.65 (m, 3H); LCMS: 323 [M+H].
Synthesis of3-methyI-9-piperidin-l-yl-2,3-dihydronaphtho[2,l-6]fl,4]oxathiine-5,6-dione
18 h ~~O
Figure imgf000029_0003
Figure imgf000029_0004
To a solution of 9-bromo-3-methyl-2,3-diliydronaphmo[2,l-ό][l,4]oxathiine-5,6-dione (0.1 g, 0.31 mmol) in 1,4-dioxane (1.0 mL) was added piperidine (0.061 mL, 0.616 mmol) and potassium carbonate (0.043 g, 0.308 mmol). The reaction mixture was stirred at 90 0C for 18 hours. The resulting mixture was filtered and solvent was removed under reduced pressure. The crude mixture was purified by flash column chromatography (SiO2, 50% EtOAc in hexanes) to give the product as a purple solid (0.025 g, 25%). M.p. = 225-2260C; 400 MHz 1H NMR (CDCl3) δ: 7.91 (d, J= 8.8, IH), 7.09 (d, J= 2.8, IH), 6.72 (m, IH), 4.62 (m, IH), 3.49 (m, 4H), 3.07 (d, J= 13.6, IH), 2.88 (m, IH), 1.71 (br. s, 6H), 1.60 (d, J = 6.4, 3H); LCMS: 330 [M+H].
Synthesis of 3-({[te;^-butyl(diphenyI)silyl]oxy}methyl)-2,3-dih3rdronaphtho[2,l-6][lj4]oxathiine-5,6-
Figure imgf000029_0005
To a solution of naphthalene-l,2-dione (0.103 g, 0.65 mmol) in acetonitrile (4.0 mL) was added l-{[tø-^butyl(diphenyl)silyl]oxy}-3-mercaptopropan-2-ol (0.226 g, 0.065 mmol) followed by diisopropylethylamine (0.114 niL, 0.065 mmol). Ηie reaction mixture was stirred for 10 minutes at room temperature followed by addition of ethyl acetate (10 niL). The organic layer was washed with water (10 niL) and 1.0 N HCl (5 mL). The organic layer was dried with sodium sulfate and concentrated under reduced pressure, (ii) To the residue was added p-toluenesulfonic acid (0.48 g, mmol) followed by acetoiiitrile (5 mL). The reaction mixture was stirred at room temperature for 2 hours. To the reaction mixture was added ethyl acetate (10 mL) and the organic layer was extracted with water (10 mL). The organic layer was dried with sodium sulfate and concentrated under reduced pressure. The crude mixture was purified by flash column chromatography (SiO2, 100% dichloromethane) to give the product as a purple solid (0.061 g, 18%). M.p. = 205-2100C; 400 MHz 1HNMR (CDCl3) δ: 8.4-8.1 (m, IH), 7.75-7.5 (m, 6H), 7.49-7.3 (m, 7H), 4.65-4.58 (m, IH), 4.1-3.93 (m, 2H), 3.2-3.05 (m, 2H), 1.08 (s, 9H); LCMS: 501 [M+H].
Synthesis of 3-[(pyridin-3-yloxy)methyl]-2,3-dihydronaphtho[2,l-6][l,4]oxathiine-5,6-dione
(Compound 17)
Figure imgf000030_0001
To a solution of 3-(hydroxymemyl)-2,3-dmydronaphmo[2,l-έ][l,4]oxathiine-5,6-dione (0.35 g, 1.34 mmol) in tetrahydrofuran (10.0 mL) was added triphenylphosphine (1.4 g, 5.34 mmol) andpyridin- 3-ol (0.507 g, 5.34 mmol) followed by diethyl (Z)-diazene-l,2-dicarboxylate (0.53 mL, 3.34 mmol). The reaction mixture was stirred at room temperature for 8 hours. The reaction was quenched by addition of water (30 mL). The aqueous layer was extracted with dichloromethane (2 x 20 mL). The organic extracts were combined and extracted thrice with 1.0N HCl (10 mL). The HCl extracts were combined and its pH adjusted to 9 with a saturated sodium carbonate solution. The aqueous layer was extracted with dichlqromethane (2 x 20 mL), extracts combined, dried with sodium sulfate and concentrated under reduced pressure. The crude mixture was purified by flash column chromatography (SiO2, 50% EtOAc in hexanes to 80% EtOAc in hexanes) to give the product as a purple solid (0.065 g, 14%). M.p. = 153-155 0C; 400 MHz 1H NMR (CDCl3) δ: 8.43-8.35 (m, IH), 8.33-8.24 (m, IH), 8.05-7.94(m, IH), 7.72-7.56 (m, 2H), 7.56-7.4 (m, 2H), 7.33-7.2 (m, IH), 4.98-4.86 (m, IH), 4.54-4.34 (m, 2H), 3.34-3.16 (m, 2H); LCMS: 340 [M+H].
Synthesis of methyl 3-methyl~5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-Z>] [l,4]oxathiine-3- carboxylate (Compound 18)
Figure imgf000031_0001
Figure imgf000031_0002
1 h
(ii) CF3COOH1 CH3CN1 RT, 72 h
Figure imgf000031_0003
To a solution of triphenylsilaiiethiol (4.987 g, 17.05 mmole) in THF (50 mL) was added the methyl 2-methyloxirane-2-carboxylate (1.64 mL, 15.5 mmol) followed by triethylamine (2.6 mL, 18.6 mmol). The reaction mixture was stirred at room temperature for 3 hours. The solvent was removed under reduced pressure to give the desired product methyl 3-mercapto-2-methyl-2-
[(triphenylsilyl)oxy]ρropanoate as a yellow oil, which was used directly in the next step without purification. The crude methyl 3-mercapto-2-methyl-2-[(triphenylsilyl)oxy]proρanoate was dissolved in acetonitrile (200 mL) and treated with the naphthalene- 1,2-dione (2.4 g, 15.5 mmole) and potassium carbonate (6.2 g). The reaction mixture was stirred at room temperature for one hour after which the reaction mixture was filtered to remove the potassium carbonate. To the resulting acetonitrile solution obtained after filtration was added trifluoroacetic acid (60 mL) and the mixture was stirred at room temperature for 72 hours. The solvent was men removed under reduced pressure. The resulting residue was dissolved in dichloromethane (200 mL) and washed successively with water (50 mL), saturated sodium carbonate solution (2 x 50 mL), water (50 mL) and saturated sodium chloride solution (50 mL). The organic extract was dried over magnesium sulfate and concentrated under reduced pressure. The crude mixture was purified by flash chromatography (SiO2, 100% dichloromethane) to give the desired product, methyl 3-methyl-5,6-dioxo-2,3,5,6-tetraliydronaphtlio[2,l-δ][l,4]oxathiine-3-carboxylate (0.42 g, 9% for three steps) as a dark red solid. M.p. = 188-189 0C; 400 MHz 1H NMR (CDCl3) δ: 8.06 (dd, J= 1.1, 1.1 Hz, IH); 7.82 (dd, J= 1.1, 0.9 Hz, IH), 7.67 (td, J= 1.1, 1.1 Hz, IH), 7.50 (td, J= 7.6, 1.1 Hz, IH), 3.81 (s, 3H), 3.38 (d, J= 13.2 Hz, IH), 3.04 (d, J= 13.7 Hz, IH), 1.88 (s, 3H); LCMS: 305 [M+H]; CaIc. for C15H12O5S: C 59.20, H 3.97, N 0; Found C 59.52, H 4.04, N 0.05.
Synthesis of isopropyl 3-methyI-5,6-dioxo-2,3,5,6-tetrahydronaphtho[2,l-Z>] [l,4]oxathiine-3- carboxylate (Compound 19)
Figure imgf000032_0001
1h
Figure imgf000032_0002
(ii) CF3COOH, CH3CN, RT, 72 h
Figure imgf000032_0003
To round bottom flask containing sodium hydrosulfi.de (0.582 g, 10.4 mmol) in isopropanol (20 InL) was added methyl 2-methyloxirane-2-carboxylate (1.0 mL, 9.44 mmol). The reaction mixture was stirred at room temperature for 2.5 hours. To the reaction mixture was then added water (20 ml) and the pH adjusted to 2 with 2 N HCl. The reaction mixture was extracted with diethyl ether (3 x 50 mL). The organic extracts were combined, dried with sodium sulfate and concentrated under reduced pressure. The resulting crude isopropyl 3-mercapto-2-methyl-2-propanoate obtained was used in the next reaction with tiaphthalene-l,2-dione trifiuoroacetic acid as outlined for example 21. The final desired product isopropyl 3-metlαyl-5,6-dioxo-2,3,5,6-tetraliydronaphtho[2,l-b][l,4]oxatliime-3-carboxylate was obtained as a dark red solid (overall yield 5% for the three steps). M.p. = 168-169 0C; 400 MHz 1H NMR (CDCl3) δ: 8.06 (dd, J= 7.7, 1.1 Hz, IH), 7.83 (dd, J= 7.7, 0.9 Hz, IH), 7.66 (td, J= 7.7, 1.4 Hz, IH), 7.49 (td, J= 7.5, 1.1 Hz, IH), 5.08 (septuplet, J = 6.3 Hz, IH), 3.35 (d, J= 13.2 Hz, IH), 3.03 (d, J= 13.2 Hz, IH), 1.86 (s, 3H), 1.27 (d, J= 6.3 Hz, 3H), 1.26 (d, J= 6.3 Hz, 3H); LCMS: 333 [M+H]; CaIc. for C17Hi6O5S: C 61.43, H 4.85, N 0; Found C 61.93, H 4.92, N 0.04
EXAMPLE 5: ANTIPROLIFERATIVE ACTIVITY
Compounds of the present invention have demonstrated potent antiproliferative activity against a variety of cancer cell lines, including DLD-I and HT-29 human colon carcinoma cells; A549 human lung carcinoma cells; DU-145 human prostate carcinoma cells; K-562 human leukemia cells; and PACA-2 human pancreatic carcinoma cells. Since β-lapachone induces cell death only in cancer cell lines and not in normal cells (Li et at, (2003) Proc Natl Acad Sd USA. 100(5): 2674-8), die present compounds were also tested in a panel of normal cell lines from a variety of tissues including NCM-460 normal colon epithelial cells. Table 1 shows the concentrations of the compounds required to inhibit 50% of cell growth (IC50).
As shown in Table 1, IC50 values in the low micromolar range and below were obtained for several of these compounds in all cancer cell lines tested.
Another effect of the compounds of the present invention is the induction or elevation of activity (e.g. elevation of the level) of one or more checkpoint molecules (i.e., a member of the E2F family of transcription factors). Studies have shown that β-lapachone induces activation of E2F1 checkpoint pathway in nuclei of cancer cells but not in normal cells, resulting in the arrest of cancer cells in Gl and/or S phase. Several compounds of the present invention were effective in activating the E2F1 checkpoint pathway, thus causing Gl and/or S phase arrest. Furthermore, the compounds of the present invention have no significant toxic effects on normal cells (See, Table 1). Cell viability was determined by measuring the activity of dehydrogenase enzymes in metabolically active cells using a tetrazolium compound, MTS. The assay was performed as described in Promega Technical Bulletin No. 169 (CellTiter 96 Aqueous Non-Radioactive Cell Proliferation Assay): All cells lines were grown in DMEM media (4.5g/L glucose) supplemented with 15% heat-inactivated FBS, 1OmM L-glutamine, and 1OmM HEPES. Briefly, cells were seeded in 96- well plates and incubated for 16 to 24 hours; test compounds were serially diluted in DMSO, further diluted in cell culture media, men added to cells (final DMSO concentration of 0.33% v/v); cells were incubated in the presence of compound for 4 hours; MTS was added to the cells and incubated for four hours; SDS was added to a final concentration of 1.4% v/v and absorbance at 49OnM was measured within two hours using a plate reader. The amount of 49OnM absorbance was directly proportional to the number of living cells in the culture. The IC50 was defined as the concentration of compound that results in a 50% reduction in the number of viable cells as compared to control wells treated λv'ith DMSO only (0.33% v/v) and 1.4% v/v SDS, and was calculated using non-linear regression analysis within Activitybase software suite.
The assays of the present invention as shown in Table 1 and methods of measuring induction of E2F1 activity and elevation of E2F1 levels can be carried out following the descriptions found in Li et al, (2003) Proc Natl Acad Sd USA. 100(5): 2674-8 and U.S. Patent Application Publication No. 2002/0169135, both incorporated herein by reference.
The antiproliferative activity of the present dihydro-oxathiine naphthoquinone derivative compounds suggests that compounds of the present invention may show wide anticancer activity. For example, the compounds of the invention are effective for treating cancers such as colon, lung, prostate, leukemia, and pancreas. These treatments are accomplished utilizing the present dihydro-oxathiine naphthoquinone derivative compounds, alone or can be utilized in combination with, other chemotherapy agents or with radiation therapy. For example, the compounds of the present invention are used for the prevention or treatment of a hyperproliferative disorder and cancer (e.g., as a preventative drag) by preventing hyperproliferative or cancer cell formation. The results of experiments with β-lapachone and similar chemical compounds have shown that Hie compounds of the present invention have a cell death effect on a variety of human cancer cells and that they can inhibit growth of other human cancer cells.
OTHER EMBODIMENTS
While the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.
Figure imgf000034_0001

Claims

We claim:
1. A compound of Formula I:
Figure imgf000035_0001
or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein:
Ri, R2, R3, and R4 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CpC6 alkyl, unsubstituted or substituted C1-C6 allcoxy, CpC6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, or amide;
R5 is H or carboxyacid or carboxy esters;
R6 and R7 are each, independently, H, unsubstituted or substituted Ci-C6 alkyl, unsubstituted or substituted CpC6 alkenyl, unsubstituted and substituted CpC6 alkoxy, unsubstituted or substituted C1-C6 acyl, C1-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle;
X is H, -OR3, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
R3 is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -OR3 and Ra and RrR5 are all H, then R5 and R7 are not both H; if X and RpR6 are all H, then R7 is not methyl; and if X, R1-R5 and R7 are all H, then R6 is not methyl.
2. A compound of Formula II:
Figure imgf000035_0002
or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein: R3 is H, halogen, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubtituted or substituted heteroaryl, or unsubstituted or substituted heterocycle; R5 is H or carboxyacid carboxy esters; X is H, -ORa, unsubstituted or substituted alkylamino; unsubstituted or substituted dialkylamino, or substituted heterocycle;
Ra is H, unsubstituted or substituted amide, unsubstituted or substituted heterocycle, or substituted silyl; provided that if X is -ORaand Ra and RpR5 are all H, then R3 and R7 are not both H; if X and Ri-Re are all H, then R7 is not methyl; and if X, R1-R5 and R7 are all H, then R6 is not methyl.
3. The compound of claim 2, wherein X is substituted heterocycle.
4. The compound of claim 3, wherein heterocycle is piperazine or piperidine.
5. The compound of claim 3 is wherein heterocycle is substituted with one of the following
(a) carbonylalkoxy;
(b) carboxyacid;
(c) phenyl;
(d) heteroaryl;
(e) heterocycle;
(f) hydroxyl;
(g) acetal;
(h) C1-C6 alkyl; each of which may be substituted.
6. The compound of claim 5, wherein heterocycle is substituted with carbonylalkoxy.
7. The compound of claim 6, wherein carbonylalkoxy is ^- 0CH2CH3
8. The compound of claim 5, wherein the heterocycle is substituted at the 4-position.
9. The compound of claim 5, wherein heterocycle is substituted with hydroxyl.
10. The compound of claim 5, wherein heterocycle is substituted with substituted C1-C6 straight chain alkyl.
11. The compound of claim 10, wherein substituted C1-C6 straight chain alkyl is -CH2W; W is hydroxyl, alkoxy, or -C(O)NR8R9;
R8 is H or C1-C6 straight chain alkyl; and R9 is Cj-C6 straight chain alkyl, C3-C6 branched alkyl, C3-C6 cycloalkyl.
12. The compound of claim 11 , wherein W is hydroxyl.
13. The compound of claim 11 , wherein W is -C(O)NR8R9.
14. The compound of claim 13, wherein R8 is H and R9 is isopropyl.
15. The compound of claim 5 , wherein heterocycle is substituted with substituted phenyl.
16. The compound of claim 15, wherein phenyl is substituted with at least one halogen.
17. The compound of claim 16, wherein phenyl is substituted with F.
18. The compound of claim 5, wherein heterocycle is substituted with acetal.
19. The compound of claim 18, wherein acetal is cyclic acetal.
20. The compound of claim 2, wherein X is -ORa.
21. The compound of claim 20, wherein Ra is substituted amide.
22. The compound of claim 21, wherein substituted amide is -C(O)NR10Rn; Rio and Rn are the same or different from each other and each represents:
(a) H;
(b) unsubstituted or substituted phenyl;
(c) unsubstituted or substituted aryl;
(d) methyl;
(e) unsubstituted or substituted C2-C6 straight chain alkyl;
(f) unsubstituted or substituted C3-C6 branched alkyl;
(g) unsubstituted or substituted C3-C8 cycloalkyl; (f) unsubstituted or substituted C3-C6 alkenyl; (h) unsubstituted or substitituted heterocycle; or (i) unsubstituted or substituted heteroaryl.
23. The compound of claim 22, wherein R10 is H and Ru is unsubstituted phenyl.
24. The compound of claim 22, wherein R10 is H and Ri | is substituted phenyl.
25. The compound of claim 24, wherein phenyl is substituted with one or more selected from the following group: halogen, hydroxyl, methyl, -CF3, C2-C6 straight chain alkyl, C3-C6 branched alkyl, C3-C8 cycloalkyl, nitro, cyano, amino, alkylamino, dialkylamino, alkoxy, -OCF3, carboxyacid, carbonylalkyl, carbonylalkoxy, thio, thioalkyl, phenyl, aryl, heterocycle, or heteroaryl.
26. The compound of claim 25, wherein phenyl is substituted with halogen, hydroxyl, -CF3, nitro, cyano, or alkoxy.
27. The compound of claim 26, wherein phenyl is substituted with at least one halogen.
28. The compound of claim 27, wherein the halogen is F.
29. The compound of claim 22, wherein R10 is H and Ri i is C3-C6 branched alkyl.
30. The compound of claim 29, wherein branched alkyl is isopropyl.
31. The compound of claim 20, wherein Ra is RxRyRzSi-, wherein Rx, Ry, and Rz are the same as or different from each other and each represents methyl, ethyl, i-propyl, t-butyl, or phenyl.
32. The compound of claim 33 , wherein Rx and Ry are both phenyl and Rz is t-butyl.
33. The compound of claim 20, wherein R3 is unsubstituted or substituted heterocycle.
34. The compound of claim 33 , wherein heterocycle is pyridine.
35. The compound of claim 34, wherein pyridine is 3-pyridine.
36. The compound of claim 2, wherein R3 is unsubstituted or substituted phenyl or unsubstituted or substituted heterocycle.
37. The compound of claim 36, wherein R3 is unsubstituted phenyl.
38. The compound of claim 36, wherein R3 is unsubstituted heterocycle.
39. The compound of claim 38, wherein heterocycle is piperidine.
40. The compound of claim 36, wherein R5 and X are both H.
41. The compound of claim 2, wherein X is H.
42. The compound of claim 41 , wherein R5 is carboxyacid.
43. The compound of claim 42, wherein R5 is H.
44. The compound of claim 2, wherein X is alkylamino or dialkylamino, each which may be substituted.
45. The compound of claim 44, wherein alkylamino or dialkylamino is -NRi2Ri3;
R,2 and RB are each independently H, unsubstituted or substituted Ci-C6 straight chain alkyl, C3-C6 branched alkyl, or unsubstituted or substituted benzyl.
46. The compound of claim 45, wherein R]2 is H and Rn is unsubstituted benzyl.
47. The compound of claim 45, wherein R12 is H and R13 is substituted Ci-C6 straight chain alkyl.
48. The compound of claim 47, wherein Ri3 is ethylphenyl.
49. The compound of claim 45, wherein R]2 is substituted Cj-C6 straight chain alkyl.
50. The compound of claim 49, wherein alkyl is substituted with acetal.
51. The compound of claim 45, wherein R]3 is methyl.
52. A compound of Formula III:
Figure imgf000039_0001
(III) or a pharmaceutically acceptable salt and/or an individual diastereomer thereof, wherein: Ri, R2, R3, R4, R5, R6, R7, R8, R9, and Ri0 are each, independently, H, halogen, hydroxyl, unsubstituted or substituted CrCβ alkyl, unsubstituted or substituted Ci -C6 alkenyl, unsubstituted or substituted Ci-C6 alkoxy, Ci-C6 alkoxycarbonyl, amino, alkylamino, dialkylamino, unsubstituted or substituted aryl, unsubstituted or substituted phenyl, unsubstituted or substituted benzyl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted heterocycle, nitro, cyano, carboxyacid, amide, iinsubstituted or substituted C1-C6 acyl, C]-Q5 alkoxycarbonyl, amino, alkylamino, or dialkylamino.
53. The compound of claim 52, wherein R6 is unsubstituted or substituted Ci-C6 alkyl.
54. The compound of claim 53, wherein R6 is propyl.
55. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 in combination with a pharmaceutically acceptable carrier.
56. A method of treating or preventing cell proliferative disorders comprising administering to a mammal in need thereof a therapeutically effective amount of the pharmaceutical composition of claim 55.
57. A method of treating cancer or precancerous conditions or preventing cancer comprising administering to a mammal in need thereof a therapeutically effective amount of a pharmaceutical composition of claim 55.
58. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 2 in combination with a pharmaceutically acceptable carrier.
59. A method of treating or preventing cell proliferative disorders comprising administering to a mammal in need thereof a therapeutically effective amount of the pharmaceutical composition of claim 58.
60. A method of treating cancer or precancerous conditions or preventing cancer comprising administering to a mammal in need thereof a therapeutically effective amount of a pharmaceutical composition of claim 58.
61. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 52 in combination with a pharmaceutically acceptable carrier.
62. A method of treating or preventing cell proliferative disorders comprising administering to a mammal in need thereof a therapeutically effective amount of the pharmaceutical composition of claim 61.
63. The method of claim 55, wherein said cell proliferative disorder is a cancer.
64. The method of claim 55, wherein said cancer is carcinoma, sarcoma, or leukemia.
65. The method of claim 55, wherein said cancer is lung cancer, colon cancer, breast cancer, pancreatic cancer, prostate cancer, acute leukemia, chronic leukemia, multiple melanoma, ovarian cancer, malignant glioma, leiomyosarcoma, or hepatoma.
66. The method of claim 55, wherein said compound of formula I, or a pharmaceutically acceptable salt thereof, or a prodrug or metabolite thereof, is administered in combination with a second chemotherapeutic agent.
67. The method of claim 55, wherein said second chemotherapeutic agent is selected from the group consisting of tamoxifen, raloxifene, anastrozole, exemestane, letrozole, trastuzumab, imatanib, paclitaxel, cyclophosphamide, lovastatin, minosine, gemcitabine, araC, 5-fiuorouracil, methotrexate, docetaxel, goserelin, vincristin, vinblastin, nocodazole, teniposide, etoposide, gemcitabine, epothilone, navelbine, camptothecin, daunonibicin, dactinomycin, mitoxantrone, amsacrine, doxorubicin, epirubicin or idarubicin.
68. The method of claim 55, wherein said treating cancer comprises a reduction in tumor size, a delay of tumor growth, an improvement in the survival of patients, or an improvement in the quality of patient life.
69. The method of claim 55, 'wherein the cancer is primary cancer or metastatic cancer.
70. A method of treating cancer or precancerous conditions or preventing cancer comprising administering to a mammal in need thereof a therapeutically effective amount of a pharmaceutical composition of claim 61.
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Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2009538298A (en) * 2006-05-26 2009-11-05 アークル インコーポレイテッド Novel lapachone compounds and methods of use thereof
US7790765B2 (en) 2007-04-30 2010-09-07 Arqule, Inc. Hydroxy sulfonate of quinone compounds and their uses
US7812051B2 (en) 2004-08-11 2010-10-12 Arqule, Inc. Pharmaceutical compositions of β-lapachone and β-lapachone analogs with improved tumor targeting potential
US8614228B2 (en) 2004-08-11 2013-12-24 Arqule, Inc. Quinone prodrug compositions and methods of use
US10829427B2 (en) 2015-12-18 2020-11-10 The Board Of Regents Of The University Of Texas System Naphthoquinones, pro-drugs, and methods of use thereof

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2004045557A2 (en) * 2002-11-18 2004-06-03 Arqule, Inc. Novel lapachone compounds and methods of use thereof

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2004045557A2 (en) * 2002-11-18 2004-06-03 Arqule, Inc. Novel lapachone compounds and methods of use thereof

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
SUGIYAMA K ET AL: "ALDOSE REDUCTASE CATALYZES THE OXIDATION OF NAPHTHALENE-1,2- DIHYDRODIOL FOR THE FORMATION OF ORTHO-NAPHTHOQUINONE" DRUG METABOLISM AND DISPOSITION, WILLIAMS AND WILKINS., BALTIMORE, MD, US, vol. 27, no. 1, 1999, pages 60-67, XP002948478 ISSN: 0090-9556 *

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7812051B2 (en) 2004-08-11 2010-10-12 Arqule, Inc. Pharmaceutical compositions of β-lapachone and β-lapachone analogs with improved tumor targeting potential
US8614228B2 (en) 2004-08-11 2013-12-24 Arqule, Inc. Quinone prodrug compositions and methods of use
JP2009538298A (en) * 2006-05-26 2009-11-05 アークル インコーポレイテッド Novel lapachone compounds and methods of use thereof
US7790765B2 (en) 2007-04-30 2010-09-07 Arqule, Inc. Hydroxy sulfonate of quinone compounds and their uses
US10829427B2 (en) 2015-12-18 2020-11-10 The Board Of Regents Of The University Of Texas System Naphthoquinones, pro-drugs, and methods of use thereof

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