一种新的多肽一一核蛋白基质抗原 115.29和编码这种多肽的多核苷酸 技术领域 A new polypeptide, a mononucleoprotein matrix antigen 115.29, and a polynucleotide encoding the polypeptide TECHNICAL FIELD
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一核蛋 白基质抗原 115.29, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多核苷酸 和多肽的制备方法和应用。 背景技术 The present invention belongs to the field of biotechnology. Specifically, the present invention describes a novel polypeptide, a nuclear protein matrix antigen 115.29, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a method and application for preparing the polynucleotide and polypeptide. Background technique
细胞生长和分化的控制过程。各种不同的核蛋白各自发挥着不同的功能, 一些 作为基质, 成为在细胞周期不同阶段上 DNA、 酶和其他分子粘附的支架结构; 另 一些属于调节蛋白, 既能够瞬时结合到基质上, 也能够在核质中以溶解状态存在 ( Loidl and Eberharter, 1995 ) 。 Controlling process of cell growth and differentiation. A variety of different nuclear proteins each play different functions. Some serve as substrates and become scaffold structures where DNA, enzymes, and other molecules adhere at different stages of the cell cycle. Others are regulatory proteins that can instantly bind to the substrate. It can also exist in the nucleus in a dissolved state (Loidl and Eberharter, 1995).
核蛋白基质抗原(SA)蛋白与其它已知的所有蛋白具有很少的序列相似性。 SA 蛋白还可以分为 SA- 1和 SA-2蛋白, SA- 1和 SA-2的 cDNA有 68%的相似性, 在氨 基酸水平上有 78%的相似性。 但是人和鼠的核蛋白基质抗原 1 (SA-1 )是高度同源 的, 在序列上具有 92.9%的相似性。 The nucleoprotein matrix antigen (SA) protein has very little sequence similarity to all other known proteins. SA proteins can also be divided into SA-1 and SA-2 proteins. The cDNAs of SA-1 and SA-2 have 68% similarity and 78% similarity at amino acid levels. However, human and murine nuclear protein matrix antigen 1 (SA-1) is highly homologous and has 92.9% similarity in sequence.
SA蛋白有一个 REDV序列, REDV序列也在纤连蛋白的 IIICS选择性接合区域找 到, 并且作为一种粘附序列, REDV序列与在早期造血细胞中表达的 VLA-4整合蛋 白相互作用 (Williams et al. , 1991) 。 然而, SA-l是一种核蛋白, REDV位点 并不涉及细胞内识别, 因此可以推断, 它在 SA-1中起的作用并不与纤粘连蛋白中 的相同。 The SA protein has a REDV sequence, and the REDV sequence is also found in the IIICS selective junction region of fibronectin, and as an adhesion sequence, the REDV sequence interacts with VLA-4 integrin expressed in early hematopoietic cells (Williams et al. al., 1991). However, SA-1 is a nuclear protein and the REDV site is not involved in intracellular recognition, so it can be inferred that it does not play the same role in SA-1 as in fibronectin.
SA-1基因在 mRNA水平和蛋 水平上的表达具有很大的差异性。 SA- 1的 mRNA 在所有组织和细胞系中都有表达, 而 SA-1蛋白主要在淋巴器官中找到, 进一步研 究发现, 它主要出现在胸腺淋巴细胞中。 并不仅仅是 SA-1基因, 另外也有其它的 一些基因也表现出在 mRNA水平上和蛋白水平上的表达差异性, 即 mRNA广泛地表 达而在蛋白水平上却只局限在特异的组织或细胞中。 The expression of SA-1 gene at mRNA level and egg level is very different. SA-1 mRNA is expressed in all tissues and cell lines, while SA-1 protein is mainly found in lymphoid organs. Further research found that it is mainly found in thymic lymphocytes. Not only the SA-1 gene, but also some other genes that show differential expression at the mRNA level and the protein level, that is, mRNA is widely expressed but limited to specific tissues or cells at the protein level in.
血液中的基质细胞形成有机的支架, 便于造血细胞的集结, 并且更进一步为干 细胞的植种、再生、繁殖和分化提供了信号( Dexter and Spooncer, 1987; Zipori, 1992 ) 。 The stromal cells in the blood form an organic scaffold, which facilitates the assembly of hematopoietic cells, and further provides a signal for stem cell seeding, regeneration, reproduction, and differentiation (Dexter and Spooncer, 1987; Zipori, 1992).
通过基因芯片的分析发现,在膀胱粘膜、 PMA+的 Ecv304细胞株、 LPS+的 Ecv304 细胞株胸腺、 正常成纤维细胞 1024NC、 Fibroblast, 生长因子刺激, 1024NT, 疤 痕成 fc生长因子刺激, 1013HT、 疤痕成 fc未用生长因子刺激, 1013HC;、 膀胱癌
建株细胞 EJ、 膀胱癌旁、 膀胱癌、 肝癌、 肝癌细胞株、 胎皮、 脾脏、 前列腺癌、 空肠腺癌、 贲门癌中, 本发明的多肽的表达谱与核蛋白基质抗原 1的表达谱非常 近似, 因此二者功能也可能类似。 本发明被命名为核蛋白基质抗原 115. 29。 Gene chip analysis revealed that in the bladder mucosa, PMA + Ecv304 cell line, LPS + Ecv304 cell line thymus, normal fibroblasts 1024NC, Fibroblast, growth factor stimulation, 1024NT, scar-fc growth factor stimulation, 1013HT, scar-fc Not stimulated with growth factors, 1013HC; bladder cancer In EJ, bladder cancer, bladder cancer, bladder cancer, liver cancer, liver cancer cell lines, placenta, spleen, prostate cancer, jejunum adenocarcinoma, and cardia cancer, the expression profile of the polypeptide of the present invention and the expression profile of nuclear protein matrix antigen 1 They are very similar, so their functions may be similar. The present invention is named nucleoprotein matrix antigen 115. 29.
由于如上所述核蛋白基质抗原 115. 29蛋白在调节细胞分裂和胚胎发育等机体 重要功能中起重要作用, 而且相信这些调节过程中涉及大量的蛋白, 因而本领域 中一直需要鉴定更多参与这些过程的核蛋白基质抗原 115. 29蛋白,特别是鉴定这 种蛋白的氨基酸序列。新核蛋白基质抗原 115. 29蛋白编码基因的分离也为研究确 定该蛋白在健康和疾病状态下的作用提供了基础。 这种蛋白可能构成开发疾 1病 诊断和 /或治疗药的基础, 因此分离其编码 DNA是非常重要的。 发明的公开 As mentioned above, the nucleoprotein matrix antigen 115. 29 protein plays an important role in regulating important functions of the body such as cell division and embryo development, and it is believed that a large number of proteins are involved in these regulatory processes, so there has been a need in the art to identify more involved in these The nuclear protein matrix antigen 115. 29 protein of the process, in particular the amino acid sequence of this protein is identified. New nuclear protein matrix antigen 115. The isolation of the protein-encoding genes also provides a basis for research to determine the role of the protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一核蛋白基质抗原 115. 29以及其 片段、 类似物和衍生物。 An object of the present invention is to provide an isolated novel polypeptide-mononucleoprotein matrix antigen 115. 29 and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。 Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码核蛋白基质抗原 115. 29的多核苷酸的重 组载体。 Another object of the present invention is to provide a recombinant vector comprising a polynucleotide encoding a nucleoprotein matrix antigen 115. 29.
本发明的另一个目的是提供含有编码核蛋白基质抗原 115. 29的多核苷酸的基 因工程化宿主细胞。 Another object of the present invention is to provide a genetically engineered host cell comprising a polynucleotide encoding a nucleoprotein matrix antigen 115. 29.
本发明的另一个目的是提供生产核蛋白基质抗原 115. 29的方法。 Another object of the present invention is to provide a method for producing a nucleoprotein matrix antigen 115. 29.
本发明的另一个目的是提供针对本发明的多肽一一核蛋白基质抗原 11 5. 29的 抗体。 Another object of the present invention is to provide antibodies against the polypeptide-mononucleoprotein matrix antigen 11 5. 29 of the present invention.
本发明的另一个目的是提供了针对本发明多肽一一核蛋白基质抗原 11 5. 29的 模拟化合物、 拮抗剂、 激动剂、 抑制剂。 Another object of the present invention is to provide mimic compounds, antagonists, agonists, and inhibitors against the polypeptide-mononucleoprotein matrix antigen 11 5. 29 of the present invention.
本发明的另一个目的是提供诊断治疗与核蛋白基质抗原 115. 29异常相关的疾 病的方法。 Another object of the present invention is to provide a method for diagnosing and treating a disease associated with abnormality of nucleoprotein matrix antigen 115. 29.
本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 SEQ ID No. 2 氨基酸序列的多肽、 或其保守性变体、 生物活性片段或衍生物。 较佳地, 该多肽 是具有 SEQ ID NO: 2氨基酸序列的多肽。 The present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或其 变体: The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
(a)编码具有 SEQ ID No. 2氨基酸序列的多肽的多核苷酸; (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID No. 2;
(b)与多核苷酸(a)互补的多核苷酸;
(c)与(a)或(b)的多核苷酸序列具有至少 70%相同性的多核苷酸。 更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ I D NO: 1中 359-778位的序列; 和(b)具有 SEQ ID NO: 1中 1-1669位的序列。 (b) a polynucleotide complementary to polynucleotide (a); (c) A polynucleotide having at least 70% identity to a polynucleotide sequence of (a) or (b). More preferably, the sequence of the polynucleotide is one selected from: (a) a sequence having positions 359-778 in SEQ ID NO: 1; and (b) a sequence having 1-1669 in SEQ ID NO: 1 Sequence of bits.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种用 该载体遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包括培 养所述宿主细胞和回收表达产物的制备本发明多肽的方法。 The invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。 The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制核蛋白基质抗原 1 15. 29蛋 白活性的化合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方法获得 的化合物。 The invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit nucleoprotein matrix antigen 1 15.29 protein activity, which comprises utilizing a polypeptide of the invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与核蛋白基质抗原 1 15. 29蛋白异常表达相关的疾 病或疾病易感性的方法, 包括检测生物样品中所述多肽或其编码多核苷酸序列中的 突变, 或者检测生物样品中本发明多肽的量或生物活性。 The present invention also relates to a method for in vitro detection of a disease or susceptibility to disease associated with abnormal expression of a nucleoprotein matrix antigen 1 15.29 protein, comprising detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, or Detection of the amount or biological activity of a polypeptide of the invention in a biological sample.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮抗 剂或抑制剂以及药学上可接受的载体。 The present invention also relates to a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗癌症、发育性疾病 或免疫性疾病或其它由于核蛋白基质抗原 1 15. 29表达异常所引起疾病的药物的 用途。 The present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention in the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of nucleoprotein matrix antigen 1 15. 29.
本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而易 见的。 Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein.
本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义-. The following terms used in this specification and claims have the following meanings unless specifically stated otherwise.
"核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指基 因组或合成的 DNA或 RNA , 它们可以是单链或双链的, 代表有义链或反义链。 类似 地, 术语 "氨基酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部分。 当 本发明中的 "氨基酸序列" 涉及一种天然存在的蛋白质分子的氨基酸序列时, 这 种 "多肽" 或 "蛋白质" 不意味着将氨基酸序列限制为与所述蛋白质分子相关的 完整的天然氨基酸。 "Nucleic acid sequence" refers to oligonucleotides, nucleotides or polynucleotides and fragments or parts thereof, and can also refer to genomic or synthetic DNA or RNA, which can be single-stranded or double-stranded, representing the sense strand or Antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变的 氨基酸序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸序列 中氨基酸或核苷酸的缺失、 插入或替换。 变体可具有 "保守性" 改变, 其中替换 的氨基酸具有与原氨基酸相类似的结构或化学性质, 如用亮氨酸替换异亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。
"缺失" 是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺 失。 A protein or polynucleotide "variant" refers to an amino acid sequence having one or more amino acids or nucleotide changes, or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence. Variants may have "conservative" changes in which the substituted amino acid has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan. "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存在的 分子相比, 一个或多个氨基酸或核苷酸的增加。 "替换" 是指由不同的氨基酸或核苷 酸替换一个或多个氨基酸或核苷酸。 "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似地, 术语 "免疫学活性"是指天然的、 重组的或合成蛋白质及其片段在合适的动物或细胞 中诱导特定免疫反应以及与特异性抗体结合的能力。 "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunologically active" refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind to specific antibodies in a suitable animal or cell.
"激动剂"是指当与核蛋白基质抗原 1 15. 29结合时, 一种可引起该蛋白质改变 从而调节该蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合物或任 何其它可结合核蛋白基质抗原 1 15. 29的分子。 An "agonist" refers to a molecule that, when combined with a nucleoprotein matrix antigen 1 15.29, can cause the protein to change, thereby regulating the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind to a nucleoprotein matrix antigen 1 15.29.
"拮抗剂" 或 "抑制物"是指当与核蛋白基质抗原 1 1 5. 29结合时, 一种可封闭 或调节核蛋白基质抗原 1 15. 29的生物学活性或免疫学活性的分子。 拮抗剂和抑制 物可以包括蛋白质、 核酸、 碳水化合物或任何其它可结合核蛋白基质抗原 11 5. 29 的分子。 An "antagonist" or "inhibitor" refers to a molecule that can block or modulate the biological or immunological activity of the nucleoprotein matrix antigen 1 15.29 when combined with the nucleoprotein matrix antigen 1 1 5.29. Antagonists and inhibitors may include proteins, nucleic acids, carbohydrates or any other molecule that can bind to a nucleoprotein matrix antigen 11 5. 29.
"调节"是指核蛋白基质抗原 1 15. 29的功能发生改变,包括蛋白质活性的升高 或降低、 结合特性的改变及核蛋白基质抗原 1 1 5. 29的任何其它生物学性质、 功能 或免疫性质的改变。 "Regulation" refers to a change in the function of nucleoprotein matrix antigen 1 15.29, including an increase or decrease in protein activity, a change in binding properties, and any other biological property, function, or function of nucleoprotein matrix antigen 1 1 5. 29. Changes in immune properties.
11基本上纯"是指基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化核蛋白基质抗原 1 1 5. 29。 基本上 纯的核蛋白基质抗原 115. 29在非还原性聚丙烯酰胺凝胶上能产生单一的主带。 核蛋 白基质抗原 115. 29多肽的纯度可用氨基酸序列分析。 "11 Substantially pure" means that it is essentially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify nuclear protein matrix antigens using standard protein purification techniques 1 1 5. 29. The substantially pure nucleoprotein matrix antigen 115. 29 can generate a single main band on a non-reducing polyacrylamide gel. The purity of the nucleoprotein matrix antigen 115. 29 polypeptide can be analyzed by amino acid sequence.
"互补的"或 "互补"是指在允许的盐浓度和温度条件下通过碱基配对的多核 苷酸天然结合。 例如, 序列 "C- T- G- A" 可与互补的序列 "G-A- C- T" 结合。 两个 单链分子之间的互补可以是部分的或全部的。 核酸链之间的互补程度对于核酸链 之间杂交的效率及强度有明显影响。 "Complementary" or "complementary" refers to the natural binding of a nucleotide by base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "C-T-G-A" can be combined with the complementary sequence "G-A-C-T". The complementarity between two single-stranded molecules may be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性"是指互补的程度, 可以是部分同源或完全同源。 "部分同源"是指 一种部分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这种 杂交的抑制可通过在严格性程度降低的条件下进行杂交 (Sou thern印迹或 "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be achieved by hybridization under conditions of reduced stringency (Sou thern blot or
Nor t hern印迹等) 来检测。 基本上同源的序列或杂交探针可竞争和抑制完全同源 的序列与靶序列在的严格性程度降低的条件下的结合。 这并不意味严格性程度降 低的条件允许非特异性结合, 因为严格性程度降低的条件要求两条序列相互的结
合为特异性或选择性相互作用; Nor t hern blot etc.) to detect. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not mean that the conditions of reduced stringency allow non-specific binding, because the conditions of reduced stringency require the binding of two sequences to each other. Combined into specific or selective interactions;
"相同性百分率"是指在两种或多种氨基酸或核酸序列比较中序列相同或相似 的百分率。 可用电子方法测定相同性百分率, 如通过 MEGALTGN程序 ( La s ergene sof tware package, DNASTAR, Inc. , Madi son Wi s. ) 。 MEGALIGN程序可根据不同 的方法如 Clus ter法比较两种或多种序列(Hi gg ins , D. G. 和 P. M. Sharp (1988) Gene 73: 237-244) 0 Clus ter法通过检查所有配对之间的距离将各组序列排列成 簇。 然后将各簇以成对或成组分配。 两个氨基酸序列如序列 A和序列 B之间的相同 性百分率通过下式计算: 序列 A与序列 B之间匹配的残基个数 X 100 序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数 也可以通过 Clus ter法或用本领域周知的方法如 Jotun Hein 测定核酸序列之 间的相同性^ "分率(He in J., (1990) Methods in emz画 ology 183: 625-645)。 "Percent identity" refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALTGN program (Lasergene sof tware package, DNASTAR, Inc., Madi son Wis.). The MEGALIGN program can compare two or more sequences according to different methods such as the Clus ter method (Hi gg ins, DG and PM Sharp (1988) Gene 73: 237-244). 0 The Clus ter method will check the distance between all pairs by Groups of sequences are arranged in clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula: The number of matching residues between sequence A and sequence X 100 The number of residues in sequence A-the number of spacer residues in sequence A The number of spacer residues in a sequence B can also be determined by Clus ter method or using methods well known in the art such as Jotun Hein ^ "Score (He in J., (1990) Methods in emzology 183: 625-645).
"相似性" 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或保 守性取代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括天冬 氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷的头部 基团有相似亲水性的氨基酸可包括亮氨酸、 异亮氨酸和纈氨酸; 甘氨酸和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨酸和苏氨酸; 苯丙氨酸和酪氨酸。 "Similarity" refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义"是指与特定的 DM或 RNA序列互补的核苷酸序列。 "反义链"是指与 "有 义链" 互补的核酸链。 "Antisense" refers to a nucleotide sequence that is complementary to a particular DM or RNA sequence. The "antisense strand" refers to a nucleic acid strand that is complementary to the "sense strand".
"衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是用 烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物学特 性的多肽。 "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. Such a chemical modification may be the replacement of a hydrogen atom with an alkyl group, an acyl group or an amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological characteristics of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 F (ab') 2及 Fv, 其能特异性结 合核蛋白基质抗原 115. 29的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa, F (ab ') 2 and Fv, which can specifically bind to the epitope of nucleoprotein matrix antigen 115. 29.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更为 相似, 但仍保留原始结合活性的抗体。 A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境(例如, 若是自然产生的就指其天然 环境) 之中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中就是 没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与之共存
的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也可能这样 的多核苷酸或多肽是某一组合物的一部分。 既然载体或组合物不是它天然环境的 成分, 它们仍然是分离的。 如本发明所用, "分离的" 是指物质从其原始环境中分离出来 (如果是天然 的物质, 原始环境即是天然环境) 。 如活体细胞内的天然状态下的多聚核苷酸和 多肽是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在的其 他物质中分开, 则为分离纯化的。 The term "isolated" refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally). For example, a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living animal, but the same polynucleotide or polypeptide coexists with some or all of it in a natural system. The separation of matter is separation. Such a polynucleotide may be part of a certain vector, or such a polynucleotide or polypeptide may be part of a certain composition. Since the carrier or composition is not a component of its natural environment, they are still isolated. As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
如本文所用, "分离的核蛋白基质抗原 115. 29" 是指核蛋白基质抗原 115. 29 基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人 员能用标准的蛋白质纯化技术纯化核蛋白基质抗原 115. 29。 基本上纯的多肽在非 还原聚丙烯酰胺凝胶上能产生单一的主带。 核蛋白基质抗原 115. 29多肽的纯度能 用氨基酸序列分析。 As used herein, "isolated nucleoprotein matrix antigen 115. 29" means nucleoprotein matrix antigen 115. 29 is substantially free of other proteins, lipids, carbohydrates, or other substances with which it is naturally associated. Those skilled in the art can purify nucleoprotein matrix antigen 115. 29 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. Nucleoprotein matrix antigen 115. 29 The purity of the polypeptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一核蛋白基质抗原 115. 29 , 其基本上是由 SEQ ID NO: 2所示的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多 肽, 优选重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的产物, 或使用重组技术从原核或真核宿主 (例如, 细菌、 酵母、 高等植物、 昆虫和哺乳动物 细胞)中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基化的, 或可 以是非糖基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。 The present invention provides a novel polypeptide-mononucleoprotein matrix antigen 115. 29, which is basically composed of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括核蛋白基质抗原 115. 29的片段、 衍生物和类似物。 如本发明所 用, 术语 "片段" 、 "衍生物" 和 "类似物" 是指基本上保持本发明的核蛋白基 质抗原 115. 29相同的生物学功能或活性的多肽。 本发明多肽的片段、衍生物或类 似物可以是: ( I )这样一种, 其中一个或多个氨基酸残基被保守或非保守氨基酸 残基 (优选的是保守氨基酸残基) 取代, 并且取代的氨基酸可以是也可以不是由 遗传密码子编码的; 或者 ( I I ) 这样一种, 其中一个或多个氨基酸残基上的某个 基团被其它基团取代包含取代基; 或者(Ι Π )这样一种, 其中成熟多肽与另一种 化合物 (比如延长多肽半衰期的化合物, 例如聚乙二醇) 融合; 或者 ( IV ) 这样 一种, 其中附加的氨基酸序列融合进成熟多肽而形成的多肽序列 (如前导序列或 分泌序列或用来纯化此多肽的序列或蛋白原序列)通过本文的阐述, 这样的片段、 衍生物和类似物被认为在本领域技术人员的知识范围之内。 The invention also includes fragments, derivatives and analogs of the nucleoprotein matrix antigen 115. 29. As used herein, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially retains the same biological function or activity as the nucleoprotein-based antigen 115.29 of the invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by a genetic codon; or (II) a type in which a group on one or more amino acid residues is substituted by another group to include a substituent; or (ΙΠ) Such a polypeptide sequence in which the mature polypeptide is fused with another compound (such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol); or (IV) a polypeptide sequence in which an additional amino acid sequence is fused into the mature polypeptide (Such as leader sequences or secretory sequences or sequences used to purify this polypeptide or protease sequences) As set forth herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸 (多核苷酸) , 基本由编码具有 SEQ ID NO: 2 氨基 酸序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID NO: 1的核苷
酸序列。 本发明的多核苷酸是从人胎脑组织的 cDNA文库中发现的。 它包含的多核 苷酸序列全长为 1669个碱基, 其开放读框 359- 778编码了 1 39个氨基酸。 根据基 因芯片表达谱比较发现, 此多肽与核蛋白基质抗原 1有相似的表达谱, 可推断出 该核蛋白基质抗原 115. 29具有核蛋白基质抗原 1相似的功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes a nucleoside of SEQ ID NO: 1 Acid sequence. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence of 1669 bases in length and its open reading frames 359-778 encode 139 amino acids. According to the comparison of gene chip expression profiles, it was found that this polypeptide has a similar expression profile to nucleoprotein matrix antigen 1, and it can be inferred that the nucleoprotein matrix antigen 115. 29 has similar functions to nucleoprotein matrix antigen 1.
本发明的多核苷酸可以是 DM形式或是 RNA形式。 DNA形式包括 cDNA、基因组 The polynucleotide of the present invention may be in the form of DM or RNA. DNA forms include cDNA, genome
DNA或人工合成的 DNA。 DNA可以是单链的或是双链的。 DNA可以是编码链或非编 码链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1所示的编码区序列相同或 者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指编码具有 SEQ ID NO: 2的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区序列有差别的核 酸序列。 DNA or synthetic DNA. DNA can be single-stranded or double-stranded. DNA can be a coding or non-coding strand. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, the "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
编码 SEQ I D NO: 2的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附加 编码序列) 以及非编码序列。 The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加编 码和 /或非编码序列的多核苷酸。 The term "polynucleotide encoding a polypeptide" refers to a polynucleotide that includes the polypeptide and a polynucleotide that includes additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基酸 序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天然发 生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异体、 缺 失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸的替换形 式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质上改变其编 码的多肽的功能。 The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. This polynucleotide variant can be a naturally occurring allelic variant or a non-naturally occurring variant. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至少 50% , 优选具有 70%的相同性) 。 本发明特别涉及在严格条件下与本发明所述多核 苷酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子强度和 较高温度下的杂交和洗脱, 如 0. 2xSSC, 0. 1%SDS, 6 (TC ;或(2)杂交时加用变性剂, 如 50% (v/v)甲酰胺, 0. 1%小牛血清 / 0. l%F i co l l, 42 °C等; 或(3)仅在两条序列之 间的相同性至少在 95%以上,更好是 97%以上时才发生杂交。 并且, 可杂交的多核 苷酸编码的多肽与 SEQ ID NO: 2所示的成熟多肽有相同的生物学功能和活性。 The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 6 (TC; or (2) Add denaturants during hybridization, such as 50% (v / v) formamide, 0.1% calf serum / 0.1% F i co ll, 42 ° C, etc .; or (3) only between the two sequences The hybridization occurs only when the identity between them is at least 95%, and more preferably 97%. Furthermore, the polypeptide encoded by the hybridizable polynucleotide has the same biological function as the mature polypeptide shown in SEQ ID NO: 2 and Active.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸片 段"的长度至少含 1 0个核苷酸, 较好是至少 20- 30个核苷酸, 更好是至少 50-60 个核苷酸, 最好是至少 1 00个核苷酸以上。 核酸片段也可用于核酸的扩增技术(如 PCR)以确定和 /或分离编码核蛋白基质抗原 1 15. 29的多核苷酸。
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used herein, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, most preferably at least 100 More than nucleotides. Nucleic acid fragments can also be used in nucleic acid amplification techniques (such as PCR) to identify and / or isolate polynucleotides encoding nucleoprotein matrix antigens 15.29. The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
本发明的编码核蛋白基质抗原 115.29的特异的多核苷酸序列能用多种方法获 得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不局限于: 1)用探针与基因组或 cDNA文库杂交以检出同源的多核苷酸序列,和 2)表达文库的 抗体筛选以检出具有共同结构特征的克隆的多核苷酸片段。 The specific polynucleotide sequence encoding the nucleoprotein matrix antigen 115.29 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DNA片段序列也能用下列方法获得: 1)从基因组 DM分离双链 DNA 序列; 2)化学合成 DNA序列以获得所述多肽的双链 DM。 The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) separating a double-stranded DNA sequence from genomic DM; 2) chemically synthesizing a DNA sequence to obtain the double-stranded DM of the polypeptide.
上述提到的方法中, 分离基因组 DM最不常用。 DM序列的直接化学合成是经 常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDM的标 准方法是从高表达该基因的供体细胞分离 raRNA并进行逆转录, 形成质粒或噬菌体 cDNA文库。 提取 mRNA的方法已有多种成熟的技术, 试剂盒也可从商业途径获得 (Qiagene)。 而构建 cDNA文库也是通常的方法(Sambrook, et al. , Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989)。 还可得到商业供应的 cDNA文库, 如 Clontech公司的不同 cDNA文库。 当 结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。 Of the methods mentioned above, genomic DM is the least commonly used. Direct chemical synthesis of DM sequences is the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating the cDM of interest is to isolate the raRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. Various methods have been developed for mRNA extraction, and kits are also commercially available (Qiagene). The construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very small expression products can be cloned.
可用常规方法从这些 cDNA文库中筛选本发明的基因。 这些方法包括(但不限 于): (l)DNA-DNA或 DNA-RNA杂交; (2)标志基因功能的出现或丧失; (3)测定核蛋 白基质抗原 115.29的转录本的水平; (4)通过免疫学技术或测定生物学活性, 来 检测基因表达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。 The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (l) DNA-DNA or DNA-RNA hybrids; (2) the presence or absence of marker gene functions; (3) determining the level of the transcript of nucleoprotein matrix antigen 115.29; (4) Detection of gene-expressed protein products by immunological techniques or determination of biological activity. The above methods can be used singly or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同 源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50个核苷酸, 最好是至少 100个核苷酸。 此外, 探针的长度通常在 2000个核苷酸之内, 较佳的 为 1000个核苷酸之内。 此处所用的探针通常是在本发明的基因序列信息的基础上 化学合成的 DNA序列。 本发明的基因本身或者片段当然可以用作探针。 DNA探针的 标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。 In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2,000 nucleotides, preferably within 1000 nucleotides. The probe used here is generally a DNA sequence chemically synthesized based on the gene sequence information of the present invention. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测核蛋白基质抗原 115.29基因表达的蛋白产物可用免 疫学技术如 Western印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA)等。 In the (4) method, immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA) can be used to detect protein products expressed by the nucleoprotein matrix antigen 115.29 gene.
应用 PCR技术扩增 DNA/RNA的方法(Saiki, et al. Science Amplification of DNA / RNA by PCR (Saiki, et al. Science
1985; 230: 1350-1354)被优选用于获得本发明的基因。 特别是很难从文库中得到全 长的 cDM时, 可优选使用 RACE法(RACE- cDNA末端快速扩增法), 用于 PCR的引 物可根据本文所公开的本发明的多核苷酸序列信息适当地选择, 并可用常规方法 合成。 可用常规方法如通过凝胶电泳分离和纯化扩增的 DNA/RNA片段。
如上所述得到的本发明的基因, 或者各种 DM片段等的多核苷酸序列可用常 规方法如双脱氧链终止法(Sanger et al. PNAS, 1977, 74: 5463- 5467)测定。 这 类多核苷酸序列测定也可用商业测序试剂盒等。 为了获得全长的 cDNA序列, 测序 需反复进行。 有时需要测定多个克隆的 cDNA序列, 才能拼接成全长的 cDNA序列。 1985; 230: 1350-1354) are preferred for obtaining the genes of the invention. In particular, when it is difficult to obtain a full-length CDM from a library, the RACE method (RACE- rapid cDNA end amplification method) can be preferably used. The primers for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / RNA fragments can be isolated and purified by conventional methods such as by gel electrophoresis. The polynucleotide sequence of the gene of the present invention or various DM fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接用 核蛋白基质抗原 115.29编码序列经基因工程产生的宿主细胞, 以及经重组技术产 生本发明所述多肽的方法。 The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a nucleoprotein matrix antigen 115.29 coding sequence, and a method for producing a polypeptide of the present invention by recombinant technology. .
本发明中, 编码核蛋白基质抗原 115.29的多核苷酸序列可插入到载体中, 以 构成含有本发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟知的细菌质 粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆转录病 毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基于 T7启 动子的表达载体(Rosenberg, et al. Gene, 1987, 56: 125); 在哺乳动物细胞中 表达的 pMSXND表达载体(Lee and Nathans, J Bio Chem. 263: 3521, 1988)和在昆 虫细胞中表达的来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和稳定, 任何质粒和载体都可以用于构建重组表达载体。 表达载体的一个重要特征是通常 含有复制起始点、 启动子、 标记基因和翻译调控元件。 In the present invention, a polynucleotide sequence encoding a nucleoprotein matrix antigen 115.29 can be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, bacteriophages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al. Gene, 1987, 56: 125) expressed in bacteria; pMSXND expression vectors expressed in mammalian cells ( Lee and Nathans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in a host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码核蛋白基质抗原 115.29的 DNA序列和合适的转录 /翻译调控元件的表达载体。 这些方法包括体外重组 DNA技 术、 DNA合成技术、 体内重组技术等(Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989)。 所述 的 DNA序列可有效连接到表达载体中的适当启动子上, 以指导 mRNA合成。 这些启 动子的代表性例子有: 大肠杆菌的 lac或 trp启动子; λ噬菌体的 PL启动子; 真 核启动子包括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启动 子、 反转录病毒的 LTRs和其它一些已知的可控制基因在原核细胞或真核细胞或其 病毒中表达的启动子。 表达载体还包括翻译起始用的核糖体结合位点和转录终止 子等。 在载体中插入增强子序列将会使其在高等真核细胞中的转录得到增强。 增 强子是 DNA表达的顺式作用因子, 通常大约有 10到 300个碱基对, 作用于启动子 以增强基因的转录。 可举的例子包括在复制起始点晚期一侧的 100到 270个碱基 对的 SV40增强子、 在复制起始点晚期一侧的多瘤增强子以及腺病毒增强子等。 Methods known to those skilled in the art can be used to construct expression vectors containing a DNA sequence encoding a nucleoprotein matrix antigen 115.29 and appropriate transcriptional / translational regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989). The DNA sequence can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, the early and late SV40 promoters, Retroviral LTRs and other known promoters that control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site for translation initiation, a transcription terminator, and the like. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenoviral enhancers.
此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择转 化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗性以 及绿色荧光蛋白(GFP) , 或用于大肠杆菌的四环素或氨苄青霉素抗性等。
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件(如启动子、 增强子等) 和选择性标记基因。 In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli. Those of ordinary skill in the art will know how to select appropriate vector / transcription control elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中, 编码核蛋白基质抗原 115. 29的多核苷酸或含有该多核苷酸的重组 载体可转化或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基因工程化 宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细胞, 如 酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链 霉菌属; 细菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细胞; 昆虫细胞如 果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowe s黑素瘤细胞等。 In the present invention, a polynucleotide encoding a nucleoprotein matrix antigen 115. 29 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: E. coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf 9; animal cells such as CH0, COS, or Bowes s melanoma cells, etc. .
用本发明所述的 DNA序列或含有所述 DM序列的重组载体转化宿主细胞可用 本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能吸收 DNA的感受态细胞可在指数生长期后收获, 用 ( 12法处理, 所用的步驟在本领域 众所周知。 可供选择的是用 MgC l2。 如果需要, 转化也可用电穿孔的方法进行。 当 宿主是真核生物, 可选用如下的 DNA转染方法: 磷酸钙共沉淀法, 或者常规机械 方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence according to the present invention or a recombinant vector containing the DM sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote such as E. coli, competent cells capable of DNA uptake can be in the exponential growth phase were harvested, treated with (Method 12, using the procedure well known in the art. Alternative is MgC l 2. If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposomes Packaging, etc.
通过常规的重组 DNA技术, 利用本发明的多核苷酸序列可用来表达或生产重 组的核蛋白基质抗原 1 15. 29 (Sc i ence, 1984 ; 224: 1431)。 一般来说有以下步骤: By conventional recombinant DNA technology, the polynucleotide sequence of the present invention can be used to express or produce a recombinant nuclear protein matrix antigen 1 15. 29 (Scence, 1984; 224: 1431). Generally there are the following steps:
(1) .用本发明的编码人 核蛋白基质抗原 1 15. 29的多核苷酸 (或变异体), 或 用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞; (1) using the polynucleotide (or variant) encoding the human nucleoprotein matrix antigen 1 15.29 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;
(2) .在合适的培养基中培养宿主细胞; (2) culturing host cells in a suitable medium;
(3) .从培养基或细胞中分离、 纯化蛋白质。 (3) Isolate and purify protein from culture medium or cells.
在步骤 (2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种常 规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当的细 胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将细胞再 培养一段时间。 In step (2), the medium used in the culture may be selected from various conventional mediums according to the host cells used. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在步骤( 3 ) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到细 胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分离和 纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但并不限 于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波处 理、 超离心、 分子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高效液相层析 (HPLC)和其它各种液相层析技术及这些方法的结合。 附图的简要说明
下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书所界 定的本发明范围。 In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If desired, recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC), and various other liquid chromatography techniques and combinations of these methods. Brief description of the drawings The following drawings are used to illustrate specific embodiments of the invention, but not to limit the scope of the invention as defined by the claims.
图 1是本发明核蛋白基质抗原 115. 29和核蛋白基质抗原 1的基因芯片表达谱比较 图。 上图是核蛋白基质抗原 115. 29的表达谱折方图, 下图是核蛋白基质抗原 1的表达 谱折方图。 其中, 1-膀胱粘膜、 2-PMA+的 Ecv304细胞株、 3- LPS+的 Ecv304细胞株胸 腺、 4-正常成纤维细胞 1024NC、 5-Fibroblas t , 生长因子刺激, 1024NT, 6_疤痕成 fc生长因子刺激, 1013HT、 7-疤痕成 fc未用生长因子刺激, 1013HC 8 -膀胱癌建株 细胞 EJ、 9-膀胱癌旁、 10-膀胱癌、 11-肝癌、 12-肝癌细胞株、 13-胎皮、 14-脾脏、 15-前列腺癌、 16-空肠腺癌、 17贲门癌。 FIG. 1 is a comparison diagram of gene chip expression profiles of nucleoprotein matrix antigen 115. 29 and nucleoprotein matrix antigen 1 of the present invention. The upper graph is a histogram of the expression profile of nucleoprotein matrix antigen 115. 29, and the lower graph is a histogram of the expression profile of nucleoprotein matrix antigen 1. Among them, 1-bladder mucosa, 2-PMA + Ecv304 cell line, 3- LPS + Ecv304 cell line thymus, 4-normal fibroblasts 1024NC, 5-Fibroblas t, growth factor stimulation, 1024NT, 6_ scar into fc growth factor Stimulation, 1013HT, 7-scar into fc without stimulation with growth factors, 1013HC 8-bladder cancer cell EJ, 9-bladder cancer, 10-bladder cancer, 11-liver cancer, 12-liver cancer cell line, 13-fetal skin , 14-spleen, 15-prostate cancer, 16-jejunum adenocarcinoma, 17 cardia cancer.
图 2为分离的核蛋白基质抗原 115. 29的聚丙烯酰胺凝胶电泳图 (SDS-PAGE ) 。 Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of the isolated nucleoprotein matrix antigen 115. 29.
15kDa为蛋白质的分子量。 箭头所指为分离出的蛋白条带。 实现本发明的最佳方式 15kDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The best way to implement the invention
下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明本 发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通 常按照常规条件如 Sambrook等人, 分子克隆:实验室手册(New York: Co l d Spr i ng Harbor Labora t ory Pres s , 1 989)中所述的条件, 或按照制造厂商所建议的条件。 实施例 1 : 核蛋白基质抗原 115. 29的克隆 The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. The experimental methods without specific conditions in the following examples are generally described in the conventional conditions such as Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Spr ing Harbor Laboraty Pres s, 1 989) Conditions, or as recommended by the manufacturer. Example 1: Cloning of nucleoprotein matrix antigen 115. 29
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RM。 用 Qu ik mRNA I sol at ion Ki t ( Qiegene 公司产品)从总 RNA中分离 poly (A) mRNA。 2ug poly (A) mRNA经逆转录形 成 cDNA。 用 Smar t cDNA克隆试剂盒(购自 Clontech )将 cDNA片段定向插入到 pBSK (+) 载体(Clontech公司产品)的多克隆位点上, 转化 DH5 a , 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequenc ing ki t (Perkin-Elmer公司产品) 和 ABI 377自 动测序仪 (Perkin-Elmer公司)测定所有克隆的 5'和 y末端的序列。将测定的 cDNA序列 与已有的公共 DNA序列数据库(Genebank )进行比较, 结果发现其中一个克隆 0746C01 的 cDM序列为新的 DNA。 通过合成一系列引物对该克隆所含的插入 cDNA片段进行双向 测定。 结果表明, 0746C01克隆所含的全长 cDNA为 1669bp (如 Seq ID N0: 1所示) , 从 第 359bp至 778bp有一个 419bp的开放阅读框架 ( 0RF ), 编码一个新的蛋白质 (如 Seq ID N0: 2所示) 。 我们将此克隆命名为 PBS-0746C01 , 编码的蛋白质命名为核蛋白基质 抗原 115. 29。 实施例 2: 用 RT- PCR方法克隆编码核蛋白基质抗原 115. 29的基因
用胎脑细胞总 RNA为模板,以 oligo-dT为引物进行逆转录反应合成 cDNA,用 Total RM of human fetal brain was extracted by one step method with guanidine isothiocyanate / phenol / chloroform. Poly (A) mRNA was isolated from total RNA using Quik mRNA Isol at ion Kit (product of Qiegene). 2ug poly (A) mRNA is reverse transcribed to form cDNA. The Smar t cDNA cloning kit (purchased from Clontech) was used to insert the cDNA fragment into the multiple cloning site of pBSK (+) vector (Clontech) to transform DH5a. The bacteria formed a cDNA library. Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the 5 'and y-terminus sequences of all clones. The determined cDNA sequence was compared with the existing public DNA sequence database (Genebank), and it was found that the CDM sequence of one of the clones 0746C01 was new DNA. A series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions. The results show that the full-length cDNA contained in the 0746C01 clone is 1669bp (as shown in Seq ID N0: 1), and there is a 419bp open reading frame (0RF) from 359bp to 778bp, which encodes a new protein (such as Seq ID N0 : Shown in 2). We named this clone PBS-0746C01, and the encoded protein was named nucleoprotein matrix antigen 115. 29. Example 2: Cloning of a gene encoding nucleoprotein matrix antigen 115. 29 by RT-PCR CDNA was synthesized using fetal brain total RNA as a template and oligo-dT as a primer.
Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增: After purification of Qiagene's kit, PCR amplification was performed with the following primers:
Primerl: 5,- GACATTATTGTCCTCTTTTTACAG -3, (SEQ ID NO: 3) Primerl: 5,-GACATTATTGTCCTCTTTTTACAG -3, (SEQ ID NO: 3)
Primer 2: 5'- TCCAGTGCTTTCCAGATCCTCACC -3' (SEQ ID NO: 4) Primer 2: 5'- TCCAGTGCTTTCCAGATCCTCACC -3 '(SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列; Primerl is a forward sequence starting at lbp of the 5th end of SEQ ID NO: 1;
Primer2为 SEQ ID NO: 1的中的 3,端反向序列。 Primer2 is the 3, terminal reverse sequence of SEQ ID NO: 1.
扩增反应的条件: 在 50μ1的反应体积中含有 50mmol/L KC1, 10mmol/L Amplification reaction conditions: 50 mmol / L KC1, 10 mmol / L in a 50 μ1 reaction volume
Tris-Cl, (pH8.5), 1.5讓 ol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚 合酶(Clontech公司产品)。 在 PE9600型 DNA热循环仪(Perkin-Elmer公司)上按下列条 件反应 25个周期: 94°C 30sec; 55°C 30s ec; 72°C 2min0 在 RT- PCR时同时设 β -act in 为阳性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克隆 试剂盒连接到 pCR载体上(Invitrogen公司产品) 。 DNA序列分析结果表明 PCR产物的 DNA序列与 SEQ ID NO: 1所示的 1- 1669bp完全相同。 实施例 3: Northern 印迹法分析核蛋白基质抗原 115.29基因的表达: Tris-Cl, (pH 8.5), 1.5 ol / L MgCl 2 , 200 μmol / L dNTP, lOpmol primer, 1U Taq DNA polymerase (Clontech). The reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) under the following conditions for 25 cycles: 94 ° C 30sec; 55 ° C 30s ec; 72 ° C 2min 0 Set β-act in at Positive control and template blank are negative controls. The amplified product was purified using a QIAGEN kit, and ligated to a pCR vector (Invitrogen product) using a TA cloning kit. The DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as that of 1-1669bp shown in SEQ ID NO: 1. Example 3: Northern blot analysis of the expression of the nucleoprotein matrix antigen 115.29 gene:
用一步法提取总 RNA [Anal. Biochem 1987, 162, 156- 159]。 该法包括酸性硫氰酸 胍苯酚 -氯仿抽提。 即用 4M异硫氰酸胍- 25mM柠檬酸钠, 0.2M乙酸钠 ( pH4.0 ) 对组织 进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇(49: 1 ) , 混合后离心。 吸 出水相层, 加入异丙醇 (0.8体积) 并将混合物离心得到 RNA沉淀。 将得到的 RNA沉淀 用 70%乙醇洗涤, 干燥并溶于水中。 用 20 g RNA, 在含 20mM 3- (N-吗啉代) 丙磺酸 (pH7.0) - 5mM乙酸钠 - ImM EDTA-2.2M甲醛的 1.2%琼脂糖凝胶上进行电泳。 然后转移 至硝酸纤维素膜上。用 a-32P dATP通过随机引物法制备 32Ρ-标记的 DNA探针。所用的 DNA 探针为图 1所示的 PCR扩增的核蛋白基质抗原 115.29编码区序列(35^ 至7785 。 将 32P-标记的探针 (约 2x l06cpm/ml ) 与转移了 RNA的硝酸纤维素膜在一溶液中于 42°C 杂交过夜, 该溶液包含 50%甲酰胺- 25mM KH2P04 ( pH7.4 ) -5 SSC-5 x Denhardt's溶液 和 200 g/ml鲑精 DM。 杂交之后, 将滤膜在 1 x SSC- 0.1°/。SDS中于 55°C洗 30min。 然后, 用 Phosphor Imager进行分析和定量。 实施例 4: 重组核蛋白基质抗原 115.29的体外表达、 分离和纯化 Total RNA extraction in one step [Anal. Biochem 1987, 162, 156-159]. This method involves acid guanidinium thiocyanate phenol-chloroform extraction. That is, the tissue is homogenized with 4M guanidinium isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ), Mix and centrifuge. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water. Using 20 g of RNA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0)-5 mM sodium acetate-1 mM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. Preparation 32 Ρ- DNA probe labeled with a- 32 P dATP by random priming method. 115.29 nucleoprotein coding sequence matrix antigen (35 ^ to DNA probes used for PCR amplification of FIG. 1 7785 The 32P- labeled probe (about 2x l0 6 cpm / ml) and the RNA transferred The nitrocellulose membrane was hybridized overnight at 42 ° C in a solution containing 50% formamide-25 mM KH 2 PO 4 (pH 7.4)-5 SSC-5 x Denhardt's solution and 200 g / ml salmon sperm DM. After hybridization, the filter was washed in 1 x SSC-0.1 ° /. SDS for 30 min at 55 ° C. Then, analysis and quantification were performed using a Phosphor Imager. Example 4: In vitro expression, isolation and isolation of recombinant nucleoprotein matrix antigen 115.29 purification
根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序列如 下: Based on SEQ ID NO: 1 and the coding region sequence shown in Figure 1, a pair of specific amplification primers was designed, the sequence is as follows:
Primer3: 5 '-CCCCATATGATGAATAAATTCACTCTTCCCTTT- 3 ' ( Seq ID No: 5 )
Primer4: 5'-CATGGATCCTCAAACCCAGAGACCTGTCCCAGA-3' ( Seq ID No: 6 ) 此两段引物的 5'端分别含有 Ndel和 BamHI酶切位点,其后分别为目的基因 5'端和 3' 端的编码序列, Ndel和 BamHI酶切位点相应于表达载体质粒 pET- 28b(+) (Novagen公司 产品, Cat.No.69865.3)上的选择性内切酶位点。 以含有全长目的基因的 pBS-0746C01 质粒为模板,进行 PCR反应。 PCR反应条件为: 总体积 50μ1中含 pBS- 0746C01质粒 10pg、 引物 Primer- 3和 Primer- 4分另 !j为 10pmol、 Advantage polymerase Mix (Clontech公司 产品) 1μ1。 循环参数: 94°C 20s, 60°C 30s, 68°C 2 min,共 25个循环。 用 Ndel和 BamHI 分别对扩增产物和质粒 pET-28(+)进行双酶切,分别回收大片段,并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5a,在含卡那霉素 (终浓度 3()μβ/ηι1 ) 的 LB 平板培养过夜后, 用菌落 PCR方法筛选阳性克隆, 并进行测序。 挑选序列正确的阳性 克隆(pET- 0746C01)用氯化钙法将重组质粒转化大肠杆菌 BL21 (DE3) plySs (Novagen 公司产品)。 在含卡那霉素 (终浓度 30 g/ml) 的 LB液体培养基中, 宿主菌 BL21' (pET- 0746C01)在 37°C培养至对数生长期, 加入 IPTG至终浓度 1麵 ol/L, 继续培养 5 小时。 离心收集菌体, 经超声波破菌,离心收集上清, 用能与 6个组氨酸(6His- Tag) 结合的亲和层析柱 His. Bind Quick Cartridge ( Novagen公司产品)进行层析, 得到 了纯化的目的蛋白核蛋白基质抗原 115.29。 经 SDS-PAGE电泳, 在 15kDa处得到一单一 的条带 (图 2) 。 将该条带转移至 PVDF膜上用 Edams水解法进行 N-端氨基酸序列分析, 结果 N-端 15个氨基酸与 SEQ ID NO: 2所示的 N-端 15个氨基酸残基完全相同。 实施例 5 抗核蛋白基质抗原 115.29抗体的产生 Primer3: 5 '-CCCCATATGATGAATAAATTCACTCTTCCCTTT- 3' (Seq ID No: 5) Primer4: 5'-CATGGATCCTCAAACCCAGAGACCTGTCCCAGA-3 '(Seq ID No: 6) The 5' ends of these two primers contain Ndel and BamHI digestion sites, respectively, followed by the coding sequences of the 5 'and 3' ends of the target gene, respectively. The Ndel and BamHI restriction sites correspond to the selective endonuclease sites on the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). The PCR reaction was performed using the pBS-0746C01 plasmid containing the full-length target gene as a template. The PCR reaction conditions were as follows: 10 pg of pBS-0746C01 plasmid, primers Primer-3 and Primer-4 were included in a total volume of 50 μ1; j was 10 pmol, Advantage polymerase Mix (Clontech) 1 μ1. Cycle parameters: 94 ° C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Ndel and BamHI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into colibacillus DH5a by the calcium chloride method. After being cultured overnight in LB plates containing kanamycin (final concentration 3 () μ β / ηι1), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0746C01) with the correct sequence was selected, and the recombinant plasmid was transformed into Escherichia coli BL21 (DE3) plySs (Novagen) using the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 g / ml), the host bacteria BL21 '(pET-0746C01) was cultured at 37 ° C to the logarithmic growth phase, and IPTG was added to a final concentration of 1 ol / L, continue to cultivate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation. The affinity chromatography column His. Bind Quick Cartridge (product of Novagen) was used to obtain 6 histidines (6His-Tag). The purified protein nuclear protein matrix antigen 115.29 was obtained. After SDS-PAGE electrophoresis, a single band was obtained at 15 kDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by the Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2. Example 5 Production of Antinuclein Matrix Antigen 115.29 Antibody
用多肽合成仪(PE公司产品) 合成下述核蛋白基质抗原 115.29特异性的多肽: NH2-Met-Asn-Lys-Phe-Thr-Leu-Pro-Phe-Pro-Leu-Gly-Val-Leu-Cys-Leu-C00H (SEQ ID NO: 7)。 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参见. - Avrameas, et al. Immunochemistry, 1969; 6: 43。 用 4mg上述血蓝蛋白多肽复合物力口上 完全弗氏佐剂免疫家兔, 15天后再用血蓝蛋白多肽复合物加不完全弗氏佐剂加强免疫 一次。 采用经 15 g/ml牛血清白蛋白多肽复合物包被的滴定板做 ELISA测定兔血清中 抗体的滴度。 用蛋白 A-Sepharose从抗体阳性的家兔血清中分离总 IgG。 将多肽结合于 溴化氰活化的 Sephar0Se4B柱上, 用亲和层析法从总 IgG中分离抗多肽抗体。 免疫沉淀 法证明纯化的抗体可特异性地与核蛋白基质抗原 115.29结合。 实施例 6: 本发明的多核苷酸片段用作杂交探针的应用 Polypeptide synthesizer (product of PE company) was used to synthesize the following nucleoprotein matrix antigen 115.29-specific peptides: NH2-Met-Asn-Lys-Phe-Thr-Leu-Pro-Phe-Pro-Leu-Gly-Val-Leu- Cys-Leu-C00H (SEQ ID NO: 7). The polypeptide is coupled to hemocyanin and bovine serum albumin to form a complex, respectively. For methods, see-Avrameas, et al. Immunochemistry, 1969; 6: 43. Rabbits were immunized with 4 mg of the hemocyanin-polypeptide complex with complete Freund's adjuvant, and 15 days later, the hemocyanin-polypeptide complex plus incomplete Freund's adjuvant was used to boost the immunity once. A titer plate coated with a 15 g / ml bovine serum albumin peptide complex was used as an ELISA to determine antibody titers in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sephar 0Se 4B column, and the anti-peptide antibody was separated from the total IgG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to nucleoprotein matrix antigen 115.29. Example 6: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的用
途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA文库杂交以鉴 定其是否含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可用该 探针检测本发明的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理组织细 胞中的表达是否异常。 The selection of suitable oligonucleotide fragments from the polynucleotides of the present invention for use as hybridization probes is versatile For example, if the probe can be used to hybridize to a genomic or cDNA library of normal tissue or pathological tissue from different sources to identify whether it contains the polynucleotide sequence of the present invention and detect a homologous polynucleotide sequence, it can further be used The probe detects whether the polynucleotide sequence of the present invention or a homologous polynucleotide sequence thereof is abnormally expressed in cells of normal tissue or pathological tissue.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1中挑选出合适的寡核苷酸 片段用作杂交探针, 并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核苷酸 序列或其同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern印迹法、 The purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by using a filter hybridization method. Acid sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting,
Northern印迹法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤膜上后使 用基本相同的步骤杂交。 这些相同的步骤是: 固定了样品的滤膜首先用不含探针的 杂交缓冲液进行预杂交, 以使滤膜上样品的非特异性的结合部位被载体和合成的多 聚物所饱和。 然后预杂交液被含有标记探针的杂交缓冲液替换, 并保温使探针与靶 核酸杂交。 杂交步骤之后, 未杂交上的探针被一系列洗膜步骤除掉。 本实施例利用 较高强度的洗膜条件(如较低盐浓度和较高的温度), 以使杂交背景降低且只保留特 异性强的信号。 本实施例选用的探针包括两类: 第一类探针是完全与本发明的多核 苷酸 SEQ ID N0: 1相同或互补的寡核苷酸片段; 第二类探针是部分与本发明的多核 苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段。 本实施例选用斑点印迹法将样品固 定在滤膜上, 在较高强度的的洗膜条件下, 第一类探针与样品的杂交特异性最强而 得以保留。 Northern blotting and photocopying methods, etc., all use the same steps to fix the polynucleotide sample to be tested on the filter and then hybridize. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer to saturate the non-specific binding site of the sample on the filter with the carrier and synthetic polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes and incubated to hybridize the probes to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. This embodiment uses higher-intensity washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the invention; the second type of probes are partially related to the invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
一、 探针的选用 First, the selection of the probe
从本发明的多核苷酸 SEQ ID NO: 1中选择寡核苷酸片段用作杂交探针, 应遵循 以下原则和需要考虑的几个方面: The selection of oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention for use as hybridization probes should follow the following principles and several aspects to be considered:
1 , 探针大小优选范围为 18- 50个核苷酸; 1. The preferred range of probe size is 18-50 nucleotides;
2 , GC含量为 30¾- 70%, 超过则非特异性杂交增加; 2.The GC content is 30¾-70%, and the non-specific hybridization increases when it exceeds;
3, 探针内部应无互补区域; 3. There should be no complementary regions inside the probe;
4, 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析,包括将该初选 探针分别与其来源序列区域 (即 SEQ ID NO: 1 )和其它已知的基因组序列及其互 补区进行同源性比较,若与非靶分子区域的同源性大于 85%或者有超过 15个连续 碱基完全相同, 则该初选探针一般就不应该使用; 4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The region is compared for homology. If the homology with the non-target molecule region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
5 , 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针: After completing the above analysis, select and synthesize the following two probes:
探针 l ( probel ), 属于第一类探针, 与 SEQ ID N0: 1的基因片段完全同源 或互补 (41Nt ):
5 '-TG AAT AAATTCACTCTTCCCTTTCCACTGGGAGTGCTGTGT- 3' ( SEQ ID NO: 8 ) 探针 2 (probe2), 属于第二类探针, 相当于 SEQ ID NO: 1的基因片段或其 互补片段的替换突变序列 (41M): Probe l (prob e l), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID N0: 1 (41Nt): 5'-TG AAT AAATTCACTCTTCCCTTTCCACTGGGAGTGCTGTGT- 3 '(SEQ ID NO: 8) Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41M ):
5'-TGAATAAATTCACTCTTCCCCTTCCACTGGGAGTGCTGTGT-3' (SEQ ID NO: 9) 与以下具体实验步骤有关的其它未列出的常用试剂及其配制方法请参考文献: 5'-TGAATAAATTCACTCTTCCCCTTCCACTGGGAGTGCTGTGT-3 '(SEQ ID NO: 9) For other common reagents not listed in the following specific experimental procedures and their preparation methods, please refer to the literature:
DNA PROBES G. H. Kel ler; M. M. Manak; Stockton Press, 1989 (USA)以及更常用的分 子克隆实验手册书籍如《分子克隆实验指南》( 1998年第二版) [美]萨姆布鲁克等著, 科学出版社。 DNA PROBES GH Kel ler; MM Manak; Stockton Press, 1989 (USA) and more commonly used molecular cloning experiment manuals such as "Molecular Cloning Experiment Guide" (Second Edition 1998) [US] Sambrook et al., Scientific Publishing Agency.
样品制备: Sample Preparation:
1, 从新鲜或冰冻组织中提取 DNA 1.Extract DNA from fresh or frozen tissue
步骤: 1 ) 将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液 (PBS) 的平孤中。 用剪刀或手术刀将组织切成小块。 操作中应保持组织湿润。 2) 以 lOOOg 离心切碎组织 10 分钟。 3)用冷匀浆缓冲液 (0.25mol/L蔗糖; 25mraol/L Tris-HCl,pH7.5; 25mmol/LnaCl; 25隱 ol/L MgCl2 ) 悬浮沉淀 (大约 10ml/g)o 4) 在 4°C用电动匀浆器以全速匀浆组织悬液, 直至组织被完全破碎。 5 ) 1000g离心 10 分钟。 6)用重悬细胞沉淀(每 0. lg最初组织样品加 1- 5ml ), 再以 lOOOg离心 10 分钟。 7)用裂解缓冲液重悬沉淀(每 O. lg最初组织样品加 lml ), 然后接以下的苯 酚抽提法。 Steps: 1) Place fresh or freshly thawed normal liver tissue in a level orphan immersed in ice and filled with phosphate buffered saline (PBS). Cut the tissue into small pieces with scissors or a scalpel. Keep tissue moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Use cold homogenization buffer (0.25mol / L sucrose; 25mraol / L Tris-HCl, pH7.5; 25mmol / LnaCl; 25cryptol / L MgCl 2 ) to suspend the pellet (about 10ml / g) o 4) in The tissue suspension was homogenized at 4 ° C with an electric homogenizer at full speed until the tissue was completely broken. 5) Centrifuge at 1000g for 10 minutes. 6) Resuspend the cell pellet (add 1-5 ml per 0.1 g of the original tissue sample) and centrifuge at 1,000 g for 10 minutes. 7) Resuspend the pellet with lysis buffer (1 ml per 0.1 g of the initial tissue sample), and then follow the phenol extraction method below.
2, DNA的苯酚抽提法 2, DNA phenol extraction method
步骤: 1)用 1- 10ml冷 PBS洗细胞, lOOOg离心 10分钟。 2)用冷细胞裂解液重 悬浮沉淀的细胞 (l xlO8细胞 /ml) 最少应用 lOOul裂解缓冲液。 3)加 SDS至终浓 度为 1%, 如果在重悬细胞之前将 SDS直接加入到细胞沉淀中, 细胞可能会形成大的 团块而难以破碎, 并降低的总产率。 这一点在抽提 >107细胞时特别严重。 4)加蛋白 酶 K至终浓度 200ug/ml。 5) 50°C保温反应 1小时或在 37°C轻轻振摇过夜。 6)用等 体积苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提, 在小离心机管中离心 10分钟。 两相 应清楚分离, 否则重新进行离心。 7)将水相转移至新管。 8)用等体积氯仿: 异戊 醇 (24: 1)抽提, 离心 10分钟。 9)将含 DM的水相转移至新管。 然后进行 DNA的 纯化和乙醇沉淀。 Steps: 1) Wash cells with 1-10 ml of cold PBS and centrifuge at 1000 g for 10 minutes. 2) Resuspend the pelleted cells with cold cell lysate (1 x 10 8 cells / ml). Use a minimum of 100 ul of lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is directly added to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) Incubate at 50 ° C for 1 hour or shake gently at 37 ° C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge in a small centrifuge tube for 10 minutes. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the aqueous phase containing DM to a new tube. The DNA was then purified and ethanol precipitated.
3, DNA的纯化和乙醇沉淀 3. Purification of DNA and ethanol precipitation
步骤: 1 )将 1/10体积 2mol/L醋酸钠和 2倍体积冷 100%乙醇加到 DM溶液中, 混匀。 在- 20°C放置 1小时或至过夜。 2)离心 10分钟。 3)小心吸出或倒出乙醇。 4) 用 70%冷乙醇 500ul洗涤沉淀, 离心 5分钟。 5)小心吸出或倒出乙醇。 用 500ul冷
乙醇洗涤沉淀, 离心 5分钟。 6)小心吸出或倒出乙醇, 然后在吸水纸上倒置使残余 乙醇流尽。 空气干燥 .10-15分钟, 以使表面乙醇挥发。 注意不要使沉淀完全干燥, 否则较难重新溶解。 7 ) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或用滴管吹 吸, 同时逐渐增加 TE, 混合至 DNA充分溶解, 每 1- 5 χ 10δ细胞所提取的大约加 lul。 Steps: 1) Add 1/10 volume of 2mol / L sodium acetate and 2 volumes of cold 100% ethanol to the DM solution and mix well. Leave at -20 ° C for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Use 500ul cold Wash the pellet with ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain off the residual ethanol. Air dry for 10-15 minutes to allow the surface ethanol to evaporate. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Vortex at low speed or suck with a dropper, and gradually increase TE, mix until the DNA is fully dissolved, and add approximately 1 ul for each 1- 5 x 10 δ cells extracted.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步骤。 The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 )将 RNA酶 A加到 DNA溶液中, 终浓度为 100ug/ml, 37°C保温 30分钟。 9 )加入 SDS和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37°C保温 30分钟。 10)用等体积 的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提反应液, 离心 10分钟。 11 ) 小心移出水 相, 用等体积的氯仿: 异戊醇 (24: 1 )重新抽提, 离心 10分钟。 12 ) 小心移出水 相, 加 1/10体积 2mol/L醋酸钠和 2.5体积冷乙醇, 混匀置- 20DC 1小时。 13)用 70% 乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3-6步骤。 14 )测定 A26。 和 A28。以检测 DNA的纯度及产率。 15 )分装后存放于 - 20°C。 8 ) Add RNase A to the DNA solution to a final concentration of 100ug / ml, and incubate at 37 ° C for 30 minutes. 9) Add SDS and proteinase K, the final concentrations are 0.5% and 100ug / ml, respectively. Incubate at 37 ° C for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase, re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1), and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 1/10 volume of 2mol / L sodium acetate and 2.5 volumes of cold ethanol, and mix well-20 DC for 1 hour. 13) Wash the precipitate with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Measure A 26 . And A 28 . To detect the purity and yield of DNA. 15) Store at -20 ° C after dispensing.
样膜的制备: Preparation of sample film:
1 )取 4 X 2张适当大小的硝酸纤维素膜( NC膜), 用铅笔在其上轻轻标出点样位置 及样号, 每一探针需两张 NC膜, 以便在后面的实验步骤中分别用高强度条件和强度 条件洗膜 。 1) Take 4 X 2 pieces of nitrocellulose membrane (NC membrane) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are needed for each probe for later experiments. In the step, the film is washed with high-strength conditions and strength conditions, respectively.
2) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。 2) Pipette and control 15 microliters each, spot on the sample film, and dry at room temperature.
3 )置于浸润有 0. Imol/LNaOH, 1.5mol/LNaCl的滤纸上 5分钟 (两次 ), 晾干置于 浸润有 0.5mol/L Tris-HCl ( pH7.0 ), 3mol/LNaCl的滤纸上 5分钟 (两次 ), 晾干。 3) Place on filter paper impregnated with 0.1 mol / L NaOH, 1.5 mol / L NaCl for 5 minutes (twice), dry and place on filter paper impregnated with 0.5 mol / L Tris-HCl (pH 7.0), 3 mol / L NaCl Allow to dry for 5 minutes (twice).
4 )夹于干净滤纸中, 以铝箔包好, 60-80"C真空干燥 2小时。 4) Clamped in clean filter paper, wrapped in aluminum foil, and dried under vacuum at 60-80 "C for 2 hours.
探针的标记 Labeling of probes
1 ) 3μ lProbe ( 0. IOD/Ιθμ 1 ), 加入 2 μ IKinase缓冲液, 8-10 uCi y-32P-dATP+2U Kinase, 以补加至终体积 20 μ 1。 1) 3 μl Probe (0.1 IOD / Ιθμ 1), add 2 μ IKinase buffer, 8-10 uCi y- 32 P-dATP + 2U Kinase, to make up to a final volume of 20 μ 1.
2 ) 37 °C 保温 2小时。 2) Incubate at 37 ° C for 2 hours.
3 )加 1/5体积的溴酚蓝指示剂 (BPB)。 3) Add 1/5 volume of bromophenol blue indicator (BPB).
4 )过 Sephadex G-50柱。 4) Pass through a Sephadex G-50 column.
5) 至有 32P- Probe洗出前开始收集第一峰(可用 Monitor监测)。 5) Collect the first peak before 32 P-Probes are washed out (monitorable).
6 ) 5滴 /管, 收集 10- 15管。 6) 5 drops / tube, collect 10-15 tubes.
7 )用液体闪烁仪监测同位素量 7) Monitor the amount of isotope with a liquid scintillator
8 )合并第一峰的收集液后即为所需制备的 32P-Probe (第二峰为游离 γ-32Ρ- dATP )。 预杂交 8) The combined solution after the first peak was collected as 32 P-Probe (second peak to prepare the desired free γ- 32 Ρ- dATP). Pre-hybridization
将样膜置于塑料袋中,加入 3- lQnig预杂交液(lOxDenhardt's; 6xSSC, 0. lmg/ml
CT DNA (小牛胸腺 DNA )。), 封好袋口后, 68°C水浴摇 2小时。 The sample membrane was placed in a plastic bag, and 3-lQnig prehybridization solution (lOxDenhardt's; 6xSSC, 0.1 mg / ml) was added. CT DNA (calf thymus DNA). ), After sealing the bag, shake at 68 ° C for 2 hours.
杂交 Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42°C水洛摇过夜。 Cut a corner of the plastic bag, add the prepared probe, seal the bag, and shake at 42 ° C in water overnight.
洗膜: Wash film:
高强度洗膜: . High-intensity washing film:.
1 )取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0. 1 SDS中, 40°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1 SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0. 1 SDS中, 40°C洗 15分钟 ( 2次)。 3) Wash in 0.1xSSC, 0.1 SDS at 40 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0. 1%SDS中, 55°C洗 30分钟 ( 2次), 室温晾干。 低强度洗膜: 4) Wash in 0.1xSSC, 0.1% SDS at 55 ° C for 30 minutes (twice), and dry at room temperature. Low-intensity washing film:
' 1 )取出已杂交好的样膜。 '1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0. l°/oSDS中, 37°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1 ° / oSDS, wash at 37 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0. 1%SDS中 , 37。C洗 15分钟 ( 2次)。 3) 0.1xSSC, 0.1% SDS, 37. C Wash for 15 minutes (twice).
4 ) 0. lxSSC, 0. 1。/。SDS中, 40°C洗 15分钟 (2次), 室温晾干。 4) 0. lxSSC, 0.1. /. Wash in SDS at 40 ° C for 15 minutes (twice) and dry at room temperature.
X-光自显影: X-ray auto-development:
-70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。 · -70 ° C, X-ray autoradiography (pressing time depends on the radioactivity of the hybrid spot). ·
实验结果: Experimental results:
釆用低强度洗膜条件所进行的杂交实验, 以上两个探针杂交斑放射性强弱没有 明显区别; 而采用高强度洗膜条件所进行的杂交实验, 探针 1 的杂交斑放射性强度 明显强于另一个探针杂交斑的放射性强度。 因而可用探针 1 定性和定量地分析本发 明的多核苷酸在不同组织中的存在和差异表达。 的 The hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radioactive intensity of the above two probe hybrid spots; while the hybridization experiments performed under high-intensity membrane washing conditions, the radioactive intensity of probe 1 was significantly stronger. To the radioactive intensity of the hybridization spot of another probe. Therefore, probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues.
实施例 7 DNA Mi croarray Example 7 DNA Mi croarray
基因芯片或基因微矩阵 (DNA Mi croarray )是目前许多国家实验室和大制药公 司都在着手研制和开发的新技术, 它是指将大量的靶基因片.段有序地、 高密度地排 列在玻璃、 硅等载体上, 然后用荧光检测和计算机软件进行数据的比较和分析, 以 达到快速、 高效、 高通量地分析生物信息的目的。 本发明的多核苷酸可作为靶 DNA 用于基因芯片技术用于高通量研究新基因功能; 寻找和筛选组织特异性新基因特别 是肿瘤等疾病相关新基因; 疾病的诊断, 如遗传性疾病。 其具体方法步骤在文献中
已有多种报道, 如可参阅文献 DeRisi, J.L. , Lyer, V. &Brown, P.0. Gene chip or microarray is a new technology that many national laboratories and large pharmaceutical companies are currently working on. It refers to the orderly and high-density arrangement of a large number of target gene pieces. The data is compared and analyzed on a carrier such as glass, silicon, and the like by fluorescence detection and computer software, so as to achieve the purpose of analyzing biological information quickly, efficiently, and with high throughput. The polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; search for and screen new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases . The specific method steps are in the literature There have been many reports, see, for example, DeRisi, JL, Lyer, V. & Brown, P.0.
(1997)Science278, 680-686.及文献 Helle, R. A. , Schema, M. , Chai, A. , Shalom, D. , (1997) PNAS 94: 2150-2155. (1997) Science 278, 680-686. And Helle, R. A., Schema, M., Chai, A., Shalom, D., (1997) PNAS 94: 2150-2155.
(一) 点样 (A) spotting
各种不同的全长 cDNA共计 4000条多核苷酸序列作为靶 DNA,其中包括本发明的 多核苷酸。 将它们分别通过 PCR 进行扩增, 纯化所得扩增产物后将其浓度调到 500ng/ul左右,用 Cartesian 7500点样仪(购自美国 Cartesian公司)点于玻璃介质 上, 点与点之间的距离为 280 μπι。 将点样后的玻片进行水合、 干燥、 置于紫外交联 仪中交联, 洗脱后干燥使 DM固定在玻璃片上制备成芯片。 其具体方法步骤在文献 中已有多种报道, 本实施例的点样后处理步骤是: A total of 4,000 polynucleotide sequences of various full-length cDNAs are used as target DNA, including the polynucleotide of the present invention. They were respectively amplified by PCR. After purification, the concentration of the amplified product was adjusted to about 500 ng / ul, and spotted on a glass medium with a Cartesian 7500 spotter (purchased from Cartesian, USA). The distance is 280 μπι. The spotted slides were hydrated, dried, and cross-linked in a UV cross-linking apparatus. After elution, the slides were fixed to fix the DM on the glass slides to prepare chips. The specific method steps have been reported in the literature in various ways. The post-spot processing steps of this embodiment are:
1. 潮湿环境中水合 4小时; 1. Hydration in a humid environment for 4 hours;
2. 0.2%SDS洗涤 1分钟; 2. 0.2% SDS was washed for 1 minute;
3. ddH20洗涤两次, 每次 1分钟; 3. Wash twice with ddH 2 0 for 1 minute each time;
4. NaBH4封闭 5分钟; 4. NaBH 4 is blocked for 5 minutes;
5. 95°C水中 2分钟; 5. 95 ° C water for 2 minutes;
6. 0.2°/。SDS洗涤 1分钟; ' 6. 0.2 ° /. SDS wash for 1 minute; '
7. dd 0冲洗两次; 7. dd 0 flush twice;
8. 凉干, 25°C储存于暗处备用。 8. Dry and store at 25 ° C in the dark for future use.
(二)探针标记 (Two) probe marking
用一步法分别从人体混合组织与机体特定组织(或经过刺激的细胞株) 中抽提 总 mRNA, 并用 Oligotex raRNA Midi Kit (购自 QiaGen公司)纯化 mRNA,通过反转录分 别将焚光试剂 Cy3dUTP (5-Araino-propargyl-2'-deoxyur idine 5'-triphate coupled to Cy3 fluorescent dye, 购自 Amersham Phamacia Biotech公司)标记人体混合组 织的 mRNA, 用荧光试剂 Cy5dUTP(5-Amino-propargyl-2'-deoxyur idine 5'-triphate coupled to Cy5 fluorescent dye, 购自 Amersham Pharaacia Biotech公司)标记机 体特定组织 (或经过刺激的细胞株) mRM, 经纯化后制备出探针。 具体步骤参照及 方法见: Total mRNA was extracted from human mixed tissues and specific tissues (or stimulated cell lines) in one step, and the mRNA was purified using Oligotex raRNA Midi Kit (purchased from QiaGen). The fluorescent reagent Cy3dUTP was separately reverse-transcribed. (5-Araino-propargyl-2'-deoxyur idine 5'-triphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamacia Biotech) was used to label the mRNA of human mixed tissue, and the fluorescent reagent Cy5dUTP (5-Amino-propargyl-2'- Deoxyur idine 5'-triphate coupled to Cy5 fluorescent dye (purchased from Amersham Pharaacia Biotech) was used to label mRM of specific tissues (or stimulated cell lines) of the body, and probes were prepared after purification. For specific steps and methods, see:
Schena, Schena,
M. , Shalon, D. , Heller, R. (1996)Proc. Natl. Acad. Sci. USA. Vol.93: 10614-10619. Sc hena, M. , Shalon, Dari. , Davis, R. W. (1995) Science.270. (20) : 467-480. M., Shalon, D., Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol. 93: 10614-10619. Sc hena, M., Shalon, Dari., Davis, RW (1995) Science. 270. (20): 467-480.
(三) 杂交 (Three) cross
分别将来自 以上两种组织的探针与芯片一起在 UniHyb™ Hybridization
Solut ion (购自 Tel eChem 公司)杂交液中进行杂交 16 小时, 室温用洗涤液 ( 1 χ SSC, 0. 2%SDS )洗涤后用 ScanArray 3000扫描仪(购自美国 Genera l Scanning公司 ) 进行扫描, 扫描的图象用 Imagene软件(美国 Biodi scovery公司)进行数据分析处 理, 算出每个点的 Cy3/Cy5比值。 Combine the probes from the two tissues with the chips in UniHyb ™ Hybridization Solut ion (purchased from Tel eChem) hybridization solution for 16 hours, washed with a washing solution (1 x SSC, 0.2% SDS) at room temperature, and then scanned with a ScanArray 3000 scanner (purchased from Genera Scanning, USA). The scanned images were analyzed and processed with Imagene software (Biodiscovery, USA) to calculate the Cy3 / Cy5 ratio of each point.
以上机体特定组织(或经过刺激的细胞株)分别为膀胱粘膜、 PMA+的 Ecv304细胞 株、 LPS+的 Ecv304细胞株胸腺、 正常成纤维细胞 1024NC、 F i brobl as t , 生长因子刺激, 1024NT, 疤痕成 fc生长因子刺激, 1013HT, 疤痕成 fc未用生长因子刺激, 1013HC、 膀 胱癌建株细胞 EJ、 膀胱癌旁、 膀胱癌、 肝癌、 肝癌细胞株、 胎皮、 脾脏、 前列腺癌、 空肠腺癌、 贲门癌。 根据这 17个 Cy3/Cy5比值绘出折方图。 (图 1 )。 由图可见本发明 所述的核蛋白基质抗原 115. 29和核蛋白基质抗原 1表达谱很相似。 工业实用性 The above specific tissues (or stimulated cell lines) are bladder mucosa, PMA + Ecv304 cell line, LPS + Ecv304 cell line thymus, normal fibroblasts 1024NC, F i brobl as t, growth factor stimulation, 1024NT, scar formation fc growth factor stimulation, 1013HT, scar into fc without growth factor stimulation, 1013HC, bladder cancer cell EJ, bladder cancer, bladder cancer, liver cancer, liver cancer cell line, fetal skin, spleen, prostate cancer, jejunal adenocarcinoma, Cardiac cancer. Draw a graph based on these 17 Cy3 / Cy5 ratios. (figure 1 ). It can be seen from the figure that the expression profile of nucleoprotein matrix antigen 115. 29 and nucleoprotein matrix antigen 1 according to the present invention are very similar. Industrial applicability
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗恶性肿瘤、 肾上腺缺乏症、 皮肤病、 各类炎症、 H IV感染和免疫性 疾病等。 The polypeptides of the present invention, as well as the antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat malignant tumors, adrenal deficiency, skin diseases, various types of inflammation, HIV infection, and immune diseases.
核蛋白涉及到细胞生长和分化的控制过程。各种不同的核蛋白各自发挥着不同 的功能, 一些作为基质, 成为在细胞周期不同阶段上 DNA、 酶和其他分子粘附的 支架结构; 另一些属于调节蛋白, 既能够瞬时结合到基质上, 也能够在核质中以 溶解状态存在。 Nuclear proteins are involved in the control of cell growth and differentiation. A variety of different nuclear proteins each play different functions. Some serve as substrates and become scaffold structures where DNA, enzymes, and other molecules adhere at different stages of the cell cycle. Others are regulatory proteins that can instantly bind to the substrate. It can also exist in the nucleus in a dissolved state.
核蛋白基质抗原 (SA )蛋白是一种核蛋白, 它有一个 REDV序列, REDV序列也 在纤连蛋白的 I I ICS选择性接合区域找到, 并且作为一种粘附序列, REDV序列可 以与在早期造血细胞中表达的 VLA- 4整合蛋白相互作用。 然而, SA - 1是一种核蛋 白, REDV位点并不涉及细胞内识别, 因此可以推断, 它在 SA-1中起的作用并不 与纤粘连蛋白中的相同。 Nucleoprotein Matrix Antigen (SA) protein is a nuclear protein, which has a REDV sequence, and the REDV sequence is also found in the II ICS selective junction region of fibronectin, and as an adhesion sequence, the REDV sequence can interact with VLA-4 integrins expressed in hematopoietic cells interact. However, SA-1 is a nuclear protein, and the REDV site is not involved in intracellular recognition, so it can be inferred that it does not play the same role in SA-1 as in fibronectin.
血液中的基质细胞形成有机的支架, 便于造血细胞的集结, 并且更进一步为干 细胞的植种、 再生、 繁殖和分化提供了信号。 The stromal cells in the blood form an organic scaffold, which facilitates the assembly of hematopoietic cells, and further provides a signal for the seeding, regeneration, reproduction, and differentiation of stem cells.
本发明的'多肽的表达谱与人核蛋白基质抗原 1的表达谱相一致,两者具有相似 的生物学功能。 本发明的多肽在体内涉及到细胞生长和分化的控制过程, 尤其是 涉及与早期造血细胞表达蛋白的相互作用, 对于血液基质细胞的迁移、 造血干细 胞的增殖分化极为重要, 其表达异常通常与一些相关的物质代谢紊乱、 蛋白功能 异常及相关组织的肿瘤等病理过程的发生密切相关, 并产生相关的疾病。 The expression profile of the 'polypeptide' of the present invention is consistent with the expression profile of human nucleoprotein matrix antigen 1, and both have similar biological functions. The polypeptide of the present invention relates to the process of controlling cell growth and differentiation in vivo, and especially relates to the interaction with proteins expressed by early hematopoietic cells. It is extremely important for the migration of blood stromal cells and the proliferation and differentiation of hematopoietic stem cells. The occurrence of pathological processes such as related substance metabolism disorders, protein dysfunction, and tumors of related tissues are closely related, and related diseases occur.
由此可见, 本发明的核蛋白基质抗原 115. 29的表达异常将产生各种疾病尤其
是血液病、 各种肿瘤、 发育紊乱症、 炎症、 免疫性疾病, 这些疾病包括但不限于: 血液病: 白细胞减少症和粒细胞缺乏症, 白血病, 淋巴瘤, 多发性骨髓瘤, 恶 性组织细胞病, 贫血, 红细胞增多症, 遗传性椭圆形红细胞 It can be seen that abnormal expression of the nucleoprotein matrix antigen 115. 29 of the present invention will cause various diseases, especially Hematopathy, various tumors, developmental disorders, inflammation, immune diseases, these diseases include but are not limited to: Hematology: Leukopenia and agranulocytosis, leukemia, lymphoma, multiple myeloma, malignant tissue cells Disease, anemia, erythrocytosis, hereditary oval red blood cells
各种组织的肿瘤: 胃癌, 肝癌, 肺癌, 食管癌, 乳腺癌, 白血病, 淋巴瘤, 甲状腺肿瘤, 子宫肌瘤, 神经细胞瘤, 星形细胞瘤, (室管膜瘤, 胶质细胞瘤, 神 经纤维瘤, 结肠癌, 子宫内膜癌, 纤维瘤, 纤维肉瘤 Tumors of various tissues: gastric cancer, liver cancer, lung cancer, esophageal cancer, breast cancer, leukemia, lymphoma, thyroid tumor, uterine fibroids, neuroblastoma, astrocytoma, (ependymoma, glioblastoma, Neurofibromas, Colon Cancer, Endometrial Cancer, Fibroma, Fibrosarcoma
发育紊乱症: 先天性流产, 腭裂, 肢体缺如, 肢体分化障碍, 房间隔缺损, 神经管缺陷, 先天性脑积水, 精神发育迟缓, 脑发育障碍, 皮肤、 脂肪和肌肉发 育不良性疾病, 骨与关节发育不良性疾病, 各种代谢缺陷病, 性发育迟缓症 Developmental disorders: congenital abortion, cleft palate, lack of limbs, limb differentiation disorders, atrial septal defect, neural tube defects, congenital hydrocephalus, mental retardation, brain development disorders, skin, fat and muscular dysplasia, Bone and joint dysplasia, various metabolic defects, sexual retardation
炎症: 慢性活动性肝炎, 结节病, 多肌炎, 慢性鼻炎, 慢性胃炎, 脑脊髓多 发性硬化, 肾小球性肾炎, 心肌炎, 心肌病, 动脉粥样硬化, 胃溃疡, 子宫颈炎, 各种感染性炎症 Inflammation: chronic active hepatitis, sarcoidosis, polymyositis, chronic rhinitis, chronic gastritis, cerebrospinal multiple sclerosis, glomerulonephritis, myocarditis, cardiomyopathy, atherosclerosis, gastric ulcer, cervicitis, Various infectious inflammations
免疫性疾病: 系统性红斑狼疮, 类风湿性关节炎, 支气管哮喘, 荨麻疹, 特 异性皮炎, 感染后心肌炎, 硬皮病, 重症肌无力, 格林-巴利综合症, 普通易变免 疫缺陷病, 原发性 B淋巴细胞免疫缺陷病, 获得性免疫缺陷综合症 本发明的核蛋白基质抗原 1 1 5. 29的表达异常还将产生某些遗传性疾病等。 本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例 如, 可治疗各种疾病尤其是血液病、 各种肿瘤、 发育紊乱症、 炎症、 免疫性疾病, 某些遗传性疾病等。 Immune diseases: Systemic lupus erythematosus, rheumatoid arthritis, bronchial asthma, urticaria, specific dermatitis, post-infection myocarditis, scleroderma, myasthenia gravis, Guillain-Barre syndrome, common variable immunodeficiency disease The primary B-lymphocyte immunodeficiency disease, the acquired immunodeficiency syndrome, the abnormal expression of the nucleoprotein matrix antigen 1 1 5. 29 of the present invention will also produce certain genetic diseases and the like. The polypeptide of the present invention and the antagonists, agonists and inhibitors of the polypeptide can be directly used in the treatment of diseases, for example, it can treat various diseases, especially blood diseases, various tumors, developmental disorders, inflammation, and immune diseases. Some hereditary diseases.
本发明也提供了筛选化合物以鉴定提高(激动剂)或阻遏(拮抗剂)核蛋白基质 抗原 1 1 5. 29的药剂的方法。 激动剂提高核蛋白基质抗原 11 5. 29刺激细胞增殖等 生物功能, 而拮抗剂阻止和治疗与细胞过度增殖有关的紊乱如各种癌症。 例如, 能在药物的存在下, 将哺乳动物细胞或表达核蛋白基质抗原 1 1 5. 29的膜制剂与标 记的核蛋白基质抗原 115. 29—起培养。 然后测定药物提高或阻遏此相互作用的能 力。 The invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) the nucleoprotein matrix antigen 1 1 5. 29. Agonists increase the nuclear protein matrix antigen 11 5. 29 stimulate cell proliferation and other biological functions, while antagonists prevent and treat disorders related to cell proliferation, such as various cancers. For example, mammalian cells or membrane preparations expressing nucleoprotein matrix antigen 1 1 5. 29 can be cultured with labeled nucleoprotein matrix antigen 115. 29—in the presence of drugs. The ability of the drug to increase or block this interaction is then measured.
核蛋白基质抗原 115. 29的拮抗剂包括筛选出的抗体、 化合物、 受体缺失物和 类似物等。 核蛋白基质抗原 115. 29的拮抗剂可以与核蛋白基质抗原 1 1 5. 29结合 并消除其功能, 或是抑制该多肽的产生, 或是与该多肽的活性位点结合使该多肽 不能发挥生物学功能。
在筛选作为拮抗剂的化合物时, 可以将核蛋白基质抗原 115. 29加入生物分析 测定中, 通过测定化合物对核蛋白基质抗原 115. 29和其受体之间相互作用的影响 来确定化合物是否是拮抗剂。 用上述筛选化合物的同样方法, 可以筛选出起拮抗 剂作用的受体缺失物和类似物。 能与核蛋白基质抗原 1 15. 29结合的多肽分子可通 过筛选由各种可能组合的氨基酸结合于固相物组成的随机多肽库而获得。 筛选时, 一般应对核蛋白基质抗原 115. 29分子进行标记。 Antagonists of nucleoprotein matrix antigen 115. 29 include screened antibodies, compounds, receptor deletions and the like. The nucleoprotein matrix antigen 115. 29 antagonist can bind to the nucleoprotein matrix antigen 1 1 5. 29 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide so that the polypeptide cannot function. biological functions. In screening compounds that act as antagonists, nucleoprotein matrix antigen 115. 29 can be added to the bioanalytical assay to determine whether the compound is an Antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds. Polypeptide molecules capable of binding to nucleoprotein matrix antigen 1 15.29 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. When screening, the nucleoprotein matrix antigen 115. 29 molecules should generally be labeled.
本发明提供了用多肽, 及其片段、 衍生物、 类似物或它们的细胞作为抗原以生 产抗体的方法。 这些抗体可以是多克隆抗体或单克隆抗体。 本发明还提供了针对 核蛋白基质抗原 115. 29抗原决定簇的抗体。 这些抗体包括(但不限于): 多克隆抗 体、 单克隆抗体、 嵌合抗体、 单链抗体、 Fab片段和 Fab表达文库产生的片段。 The present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen. These antibodies can be polyclonal or monoclonal antibodies. The invention also provides antibodies against a nucleoprotein matrix antigen 115. 29 epitope. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments produced by Fab expression libraries.
多克隆抗体的生产可用核蛋白基质抗原 1 15. 29直接注射免疫动物 (如家兔, 小鼠, 大鼠等) 的方法得到, 多种佐剂可用于增强免疫反应, 包括但不限于弗氏 佐剂等。 制备核蛋白基质抗原 115. 29的单克隆抗体的技术包括但不限于杂交瘤技 术(Koh l er and Mi l s tein. Na ture, 1975, 256: 495-497) , 三瘤技术, 人 Β-细胞杂 交瘤技术, EBV-杂交瘤技术等。 将人恒定区和非人源的可变区结合的嵌合抗体可 用巳有的技术生产(Morr i son e t a l , PNAS, 1985, 81 : 6851) 0 而已有的生产单链抗 体的技术(U. S. Pa t No. 4946778)也可用于生产抗核蛋白基质抗原 115. 29的单链 抗体。 Polyclonal antibodies can be produced by direct injection of nucleoprotein matrix antigen 1 15. 29 into immunized animals (such as rabbits, mice, rats, etc.). A variety of adjuvants can be used to enhance the immune response, including but not limited to Freund's Adjuvant, etc. Techniques for preparing monoclonal antibodies against nucleoprotein matrix antigen 115. 29 include, but are not limited to, hybridoma technology (Kohler and Milstein. Nature, 1975, 256: 495-497), triple tumor technology, human beta-cells Hybridoma technology, EBV-hybridoma technology, etc. The chimeric human antibody constant region and the variable region of non-human origin may be used in combination Pat some production techniques (Morr i son etal, PNAS, 1985, 81: 6851) 0 only some technical production of single chain antibodies (US Pa t No. 4946778) can also be used to produce single-chain antibodies against nuclear protein 115. 29.
抗核蛋白基质抗原 115. 29的抗体可用于免疫组织化学技术中,检测活检标本 中的核蛋白基质抗原 115. 29。 Antibodies against nucleoprotein matrix antigen 115. 29 can be used in immunohistochemical techniques to detect nucleoprotein matrix antigen 115. 29 in biopsy specimens.
与核蛋白基质抗原 115. 29结合的单克隆抗体也可用放射性同位素标记, 注入 体内可跟踪其位置和分布。 这种放射性标记的抗体可作为一种非创伤性诊断方法 用于胂瘤细胞的定位和判断是否有转移。 Monoclonal antibodies that bind to nucleoprotein matrix antigen 115. 29 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
抗体还可用于设计针对体内某一特殊部位的免疫毒素。 如核蛋白基质抗原 ' 115. 29高亲和性的单克隆抗体可与细菌或植物毒素(如白喉毒素, 蓖麻蛋白, 红豆 碱等)共价结合。 一种通常的方法是用巯基交联剂如 SPDP , 攻击抗体的氨基, 通过 二硫键的交换, 将毒素结合于抗体上, 这种杂交抗体可用于杀灭核蛋白基质抗原 115. 29阳性的细胞。 Antibodies can also be used to design immunotoxins that target a particular part of the body. For example, the nucleoprotein matrix antigen '115. 29 high affinity monoclonal antibodies can covalently bind to bacterial or plant toxins (such as diphtheria toxin, ricin, ormosine, etc.). A common method is to attack the amino group of the antibody with a thiol cross-linking agent such as SPDP, and bind the toxin to the antibody through the exchange of disulfide bonds. This hybrid antibody can be used to kill the nucleoprotein matrix antigen 115. 29 positive cell.
本发明中的抗体可用于治疗或预防与核蛋白基质抗原 115. 29相关的疾病。 给 予适当剂量的抗体可以刺激或阻断核蛋白基质抗原 115. 29的产生或活性。 The antibodies of the present invention can be used to treat or prevent diseases related to nucleoprotein matrix antigen 115. 29. Administration of an appropriate dose of antibody can stimulate or block the production or activity of nucleoprotein matrix antigen 115. 29.
本发明还涉及定量和定位检测核蛋白基质抗原 115. 29水平的诊断试验方法。 这些试验是本领域所熟知的, 且包括 FI SH测定和放射免疫测定。 试验中所检测的
核蛋白基质抗原 115.29水平, 可以用作解释核蛋白基质抗原 115.29在各种疾病 中的重要性和用于诊断核蛋白基质抗原 115.29起作用的疾病。 The invention also relates to a diagnostic test method for quantitatively and locally detecting the level of nucleoprotein matrix antigen 115. 29. These tests are well known in the art and include FI SH assays and radioimmunoassays. Tested during the test The level of nucleoprotein matrix antigen 115.29 can be used to explain the importance of nucleoprotein matrix antigen 115.29 in various diseases and to diagnose diseases where nucleoprotein matrix antigen 115.29 plays a role.
本发明的多肽还可用作肽谱分析, 例如, 多肽可用物理的、 化学或酶进行特 异性切割, 并进行一维或二维或三维的凝胶电泳分析,更好的是进行质谱分析。 The polypeptide of the present invention can also be used for peptide mapping analysis. For example, the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry.
编码核蛋白基质抗原 115.29的多核苷酸也可用于多种治疗目的。基因治疗技 术可用于治疗由于核蛋白基质抗原 115.29的无表达或异常 /无活性表达所致的细 胞增殖、 发育或代谢异常。 重组的基因治疗载体(如病毒载体)可设计用于表达变 异的核蛋白基质抗原 115.29,以抑制内源性的核蛋白基质抗原 115.29活性。例如, 一种变异的核蛋白基质抗原 115.29可以是缩短的、 缺失了信号传导功能域的核蛋 白基质抗原 115.29, 虽可与下游的底物结合, 但缺乏信号传导活性。 因此重组的 基因治疗载体可用于治疗核蛋白基质抗原 115.29表达或活性异常所致的疾病。 来 源于病毒的表达载体如逆转录病毒、 腺病毒、 腺病毒相关病毒、 单纯疱疹病毒、 细小病毒等可用于将编码核蛋白基质抗原 115.29的多核苷酸转移至细胞内。 构建 携带编码核蛋白基质抗原 115.29的多核苷酸的重组病毒载体的方法可见于已有文 献(Sambrook, et al.)。 另外重组编码核蛋白基质抗原 115.29的多核苷酸可包装 到脂质体中转移至细胞内。 The polynucleotide encoding the nucleoprotein matrix antigen 115.29 can also be used for a variety of therapeutic purposes. Gene therapy techniques can be used to treat abnormal cell proliferation, development, or metabolism caused by the non-expression or abnormal / inactive expression of nucleoprotein matrix antigen 115.29. Recombinant gene therapy vectors (such as viral vectors) can be designed to express the mutated nucleoprotein matrix antigen 115.29 to inhibit endogenous nucleoprotein matrix antigen 115.29 activity. For example, a mutated nuclear protein matrix antigen 115.29 may be a shortened nuclear protein matrix antigen 115.29 that lacks a signaling domain. Although it can bind to downstream substrates, it lacks signaling activity. Therefore, the recombinant gene therapy vector can be used to treat diseases caused by abnormal expression or activity of nuclear protein matrix antigen 115.29. Expression vectors derived from viruses such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus, etc. can be used to transfer a polynucleotide encoding a nuclear protein matrix antigen 115.29 into a cell. Methods for constructing recombinant viral vectors carrying a polynucleotide encoding a nucleoprotein matrix antigen 115.29 can be found in the existing literature (Sambrook, et al.). In addition, a recombinant polynucleotide encoding the nucleoprotein matrix antigen 115.29 can be packaged into liposomes and transferred into cells.
多核苷酸导入组织或细胞内的方法包括: 将多核苷酸直接注入到体内组织中; 或在体外通过载体(如病毒、 噬菌体或质粒等)先将多核苷酸导入细胞中, 再将细 胞移植到体内等。 Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
抑制核蛋白基质抗原 115.29 mRNA的寡核苷酸(包括反义 RM和 DNA)以及核酶 也在本发明的范围之内。 核酶是一种能特异性分解特定 RNA的酶样 RNA分子, 其 作用机制是核酶分子与互补的靶 RM特异性杂交后进行核酸内切作用。反义的 RNA 和 DM及核酶可用巳有的任何 RNA或 DNA合成技术获得, 如固相磷酸酰胺化学合 成法合成寡核苷酸的技术已广泛应用。 反义 RNA分子可通过编码该 RNA的 DNA序 列在体外或体内转录获得。 这种 DM序列已整合到载体的 RM聚合酶启动子的下 游。 为了增加核酸分子的稳定性, 可用多种方法对其进行修饰, 如增加两侧的序 列长度, 核糖核苷之间的连接应用磷酸硫酯键或肽键而非磷酸二酯键。 Oligonucleotides (including antisense RM and DNA) and ribozymes that inhibit nucleoprotein matrix antigen 115.29 mRNA are also within the scope of the present invention. A ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RM to perform endonucleation. Antisense RNA, DM, and ribozymes can be obtained by any RNA or DNA synthesis technology. For example, solid-phase phosphate amide chemical synthesis to synthesize oligonucleotides has been widely used. Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DM sequence has been integrated downstream of the RM polymerase promoter of the vector. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the linkage between ribonucleosides using phosphate thioester or peptide bonds instead of phosphodiester bonds.
编码核蛋白基质抗原 115.29的多核苷酸可用于与核蛋白基质抗原 115.29的 相关疾病的诊断。 编码核蛋白基质抗原 115.29的多核苷酸可用于检测核蛋白基质 抗原 115.29的表达与否或在疾病状态下核蛋白基质抗原 115.29的异常表达。 如 编码核蛋白基质抗原 115.29的 DNA序列可用于对活检标本进行杂交以判断核蛋白 基质抗原 115.29的表达状况。 杂交技术包括 Southern印迹法, Northern印迹法、
原位杂交等。 这些技术方法都是公开的成熟技术, 相关的试剂盒都可从商业途径 得到。 本发明的多核苷酸的一部分或全部可作为探针固定在微阵列(Microarray) 或 DNA芯片(又称为 "基因芯片" )上, 用于分析组织中基因的差异表达分析和基 因诊断。 用核蛋白基质抗原 115. 29特异的引物进行 RNA-聚合酶链反应(RT - PCR) 体外扩增也可检测核蛋白基质抗原 115. 29的转录产物。 The polynucleotide encoding the nucleoprotein matrix antigen 115.29 can be used for the diagnosis of diseases related to the nucleoprotein matrix antigen 115.29. The polynucleotide encoding the nucleoprotein matrix antigen 115.29 can be used to detect the expression of the nucleoprotein matrix antigen 115.29 or the abnormal expression of the nucleoprotein matrix antigen 115.29 in a disease state. For example, the DNA sequence encoding the nucleoprotein matrix antigen 115.29 can be used to hybridize biopsy specimens to determine the expression of the nucleoprotein matrix antigen 115.29. Hybridization techniques include Southern blotting, Northern blotting, In situ hybridization, etc. These techniques and methods are publicly available and mature, and related kits are commercially available. Some or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray or a DNA chip (also known as a "gene chip") for analyzing differential expression analysis and gene diagnosis of genes in tissues. The nucleoprotein matrix antigen 115. 29 specific primers for RNA-polymerase chain reaction (RT-PCR) amplification in vitro can also detect the nucleoprotein matrix antigen 115. 29 transcription products.
检测核蛋白基质抗原 115. 29基因的突变也可用于诊断核蛋白基质抗原 115. 29相关的疾病。核蛋白基质抗原 115. 29突变的形式包括与正常野生型核蛋白 基质抗原 115. 29 DNA序列相比的点突变、 易位、 缺失、 重组和其它任何异常等。 可用已有的技术如 Southern印迹法、 DM序列分析、 PCR和原位杂交检测突变。 另外, 突变有可能影响蛋白的表达, 因此用 Nor thern印迹法、 Wes tern印迹法可 间接判断基因有无突变。 Detection of nucleoprotein matrix antigen 115. 29 mutations can also be used to diagnose nucleoprotein matrix antigen 115. 29-related diseases. Nucleoprotein matrix antigen 115. 29 mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to the normal wild-type nucleoprotein matrix antigen 115. 29 DNA sequence. Mutations can be detected using existing techniques such as Southern blotting, DM sequence analysis, PCR and in situ hybridization. In addition, mutations may affect the expression of proteins. Therefore, Nor thern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
本发明的序列对染色体鉴定也是有价值的。 该序列会特异性地针对某条人染 色体具体位置且并可以与其杂交。 目前, 需要鉴定染色体上的各基因的具体位点。 现在, 只有很少的基于实际序列数据(重复多态性)的染色体标记物可用于标记染 色体位置。 根据本发明, 为了将这些序列与疾病相关基因相关联, 其重要的第一 步就是将这些 DNA序列定位于染色体上。 The sequences of the invention are also valuable for chromosome identification. This sequence will specifically target a specific position of a human chromosome and can hybridize with it. Currently, specific sites for each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeat polymorphisms) are available for labeling chromosomal positions. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these DNA sequences on a chromosome.
简而言之, 根据 cDNA制备 PCR引物(优选 15- 35bp) , 可以将序列定位于染色体 上。 然后, 将这些引物用于 PCR筛选含各条人染色体的体细胞杂合细胞。 只有那 些含有相应于引物的人基因的杂合细胞会产生扩增的片段。 In short, PCR primers (preferably 15-35bp) are prepared based on cDNA, and the sequences can be mapped on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those hybrid cells containing human genes corresponding to the primers will produce amplified fragments.
体细胞杂合细胞的 PCR定位法, 是将 DNA定位到具体染色体的快捷方法。 使用 本发明的寡核苷酸引物, 通过类似方法, 可利用一组来自特定染色体的片段或大 量基因组克隆而实现亚定位。 可用于染色体定位的其它类似策略包括原位杂交、 用标记的流式分选的染色体预筛选和杂交预选, 从而构建染色体特异的 cDNA库。 PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes. Using the oligonucleotide primers of the present invention, by a similar method, a set of fragments from a specific chromosome or a large number of genomic clones can be used to achieve sublocalization. Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and pre-selection of hybridization to construct chromosome-specific cDNA libraries.
将 cDNA克隆与中期染色体进行荧光原位杂交(FISH) , 可以在一个步骤中精确 地进行染色体定位。 此技术的综述, 参见 Verma等, Human Chromosomes: a Manua l of Bas ic Techniques, Pergamon Pres s, New York (1988)。 Fluorescent in situ hybridization (FISH) of cDNA clones with metaphase chromosomes allows precise chromosomal localization in one step. For a review of this technique, see Verma et al., Human Chromosomes: a Manua l of Basic Techniques, Pergamon Pres s, New York (1988).
一旦序列被定位到准确的染色体位置, 此序列在染色体上的物理位置就可以 与基因图数据相关联。这些数据可见于例如, V. Mckus i ck, Mendel i an Inher i tance in Man (可通过与 Johns Hopkins Univers i ty Wel ch Medi ca l Library联机获得)。 然后可通过连锁分析, 确定基因与业已定位到染色体区域上的疾病之间的关系。 Once the sequence is located at the exact chromosomal location, the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckus i ck, Mendel i an Inher i tance in Man (available online with Johns Hopkins University Welch Medi Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
接着, 需要测定患病和未患病个体间的 cDNA或基因组序列差异。 如果在一些 或所有的患病个体中观察到某突变, 而该突变在任何正常个体中未观察到, 则该
突变可能是疾病的病因。 比较患病和未患病个体, 通常涉及首先寻找染色体中结 构的变化, 如从染色体水平可见的或用基于 cDM序列的 PCR可检测的缺失或易位。 根据目前的物理作图和基因定位技术的分辨能力, 被精确定位至与疾病有关的染 色体区域的 cDNA , 可以是 50至 5 00个潜在致病基因间之一种(假定 1兆碱基作图分 辨能力和每 20kb对应于一个基因)。 Next, the differences in cDNA or genomic sequences between the affected and unaffected individuals need to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individual, then the Mutations may be the cause of the disease. Comparing diseased and unaffected individuals usually involves first looking for structural changes in the chromosome, such as deletions or translocations that are visible at the chromosomal level or detectable with cDM sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the disease-related chromosomal region can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping) Resolving power and each 20kb corresponds to a gene).
可以将本发明的多肽、 多核苷酸及其模拟物、 激动剂、 拮抗剂和抑制剂与合 适的药物载体组合后使用。 这些载体可以是水、 葡萄糖、 乙醇、 盐类、 缓冲液、 甘油以及它们的组合。 组合物包含安全有效量的多肽或拮抗剂以及不影响药物效 果的载体和赋形剂。 这些组合物可以作为药物用于疾病治疗。 The polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier. These carriers can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof. The composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
本发明还提供含有一种或多种容器的药盒或试剂盒, 容器中装有一种或多种 本发明的药用组合物成分。 与这些容器一起, 可以有由制造、 使用或销售药品或 生物制品的政府管理机构所给出的指示性提示, 该提示反映出生产、 使用或销售 的政府管理机构许可其在人体上施用。 此外, 本发明的多肽可以与其它的治疗化 合物结合使用。 The present invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention. Along with these containers, there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which reminders permit their administration on the human body by government agencies that manufacture, use, or sell them. In addition, the polypeptide of the present invention can be used in combination with other therapeutic compounds.
药物组合物可以以方便的方式给药, 如通过局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻内或皮内的给药途径。 核蛋白基质抗原 115. 29以有效地治疗和 /或预防 具体的适应症的量来给药。 施用于患者的核蛋白基质抗原 115. 29的量和剂量范围 将取决于许多因素, 如给药方式、 待治疗者的健康条件和诊断医生的判断。
The pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration. Nucleoprotein matrix antigen 115. 29 is administered in an amount effective to treat and / or prevent a specific indication. The amount and range of nucleoprotein matrix antigen 115.29 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.