WO2001081383A1 - A novel polypeptide-homo phosphatase 9 and polynucleotide encoding said polypeptide - Google Patents

A novel polypeptide-homo phosphatase 9 and polynucleotide encoding said polypeptide Download PDF

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Publication number
WO2001081383A1
WO2001081383A1 PCT/CN2001/000582 CN0100582W WO0181383A1 WO 2001081383 A1 WO2001081383 A1 WO 2001081383A1 CN 0100582 W CN0100582 W CN 0100582W WO 0181383 A1 WO0181383 A1 WO 0181383A1
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Prior art keywords
polypeptide
polynucleotide
human phosphatase
sequence
seq
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PCT/CN2001/000582
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French (fr)
Chinese (zh)
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Yumin Mao
Yi Xie
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Biowindow Gene Development Inc. Shanghai
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Priority to AU68900/01A priority Critical patent/AU6890001A/en
Publication of WO2001081383A1 publication Critical patent/WO2001081383A1/en

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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, human phosphatase 9, and a polynucleotide sequence encoding the polypeptide. The invention also relates to methods and applications for preparing such polynucleotides and polypeptides. Background technique
  • phosphoglycerides There are many types of phosphoglycerides (phospholipids for short), and the turnover in the body is fast. It is the main component of cell membrane and organelle membrane. Changes in phospholipid composition have important regulatory effects on cell membrane fluidity, membrane protein activity, and other cell physiological functions. Phospholipids are hydrolyzed into glycerol, fatty acids, phosphoric acid and various amino alcohols in the body.
  • phospholipases A, A 2 , C, and D which act on different lipid bonds of phospholipids, respectively.
  • phospholipases A1 exclusively phospholipid molecules
  • phospholipase 42 exclusively hydrolyzed phospholipid molecules C 2 fatty acid position
  • phospholipase C! Has an effect on the hydrolysis of phosphate double lipid bonds.
  • phospholipases Al, A2, and C have the specificity of their catalytic substrates, they are more likely to work synergistically in the body, and may even be functionally complementary under certain conditions.
  • PLA1 and PLA2 can exchange substrates with each other under certain conditions.
  • PLA1, PLA2, and PLC are often found to form a chain of phospholipid hydrolysis reaction systems.
  • the structure of PLA2 has also been understood.
  • the gene encoding this human phospholipase PLA2 is located on the human chromosome 22ql 3.1.
  • the results of Nor thern hybridization show that the mRNA of human phospholipase PLA2 is uniform in various human tissues It is expressed, especially in heart, brain, skeletal muscle, prostate, spinal cord, thyroid and other tissues.
  • GXSXG also has an ankyrin sequence that repeats at the N-terminus.
  • the N-terminal repeating ankyrin sequence is involved in protein-to-protein interactions.
  • Phosphatidylcholine (PtdCho) is the most important phospholipid in mammalian cell membranes. It can regulate the survival and development of cells, while phospholipase PLA2 can regulate the level of PtdCho in cells. (B i och im B i ophys Ac ta 1999 Ju l 9; 1439 (1): 77-88) l Studies have found that in ischemic cell injury, the phosphorylation of the membrane is due to the increased activity of phospholipase PLA2, which can be used to treat acute ischemic kidney disease. (Curr Op in Nephro l Hyper Tens 1999 Ju l; 8 (4): 473-7)
  • PLA2 phospholipases A2
  • PLA2 of the viper can block the release of acetylcholine from the nerve endings and thus inhibit neuromuscular conduction.
  • Human PLA2 plays a role in important cellular processes such as the digestion and metabolism of phospholipids and the synthesis of inflammatory response precursors.
  • Clinical studies have shown that increased levels of PLA2 in plasma and joint lubricating fluids have a positive correlation with the intensity of arthritis, and some cellular endotoxins and immunoregulatory factors have a critical effect on the effects of PLA2.
  • PLA2 antagonist protein is effective for the treatment of diseases including arthritis, allergic inflammation, dermatitis, ophthalmitis, and collagenitis, and can simultaneously avoid various side effects caused by compound treatment of inflammation.
  • human phosphatase 9 protein plays an important role in regulating important functions of the body such as cell division and embryo development, and it is believed that a large number of proteins are involved in these regulatory processes, so there has been a need in the art to identify more people involved in these processes Phosphatase 9 protein, especially the amino acid sequence of this protein is identified. Isolation of the new human phosphatase 9 protein encoding gene also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
  • Another object of the invention is to provide a polynucleotide encoding the polypeptide.
  • Another object of the present invention is to provide a method for producing human phosphatase 9.
  • Another object of the present invention is to provide an antibody against the polypeptide-human phosphatase 9 of the present invention.
  • Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors directed to the polypeptide of the present invention-human phosphatase 9.
  • Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of human phosphatase 9.
  • the present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof.
  • the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
  • the invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
  • sequence of the polynucleotide is one selected from the group consisting of: (a) having SEQ ID NO: 1
  • the present invention further relates to a vector, particularly an expression vector, containing the polynucleotide of the present invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
  • the invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
  • the invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit the activity of human phosphatase 9 protein, which comprises utilizing the polypeptide of the invention.
  • the invention also relates to compounds obtained by this method.
  • the invention also relates to a method for detecting a disease or susceptibility to disease associated with abnormal expression of human phosphatase 9 protein in vitro, which comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, or detecting a mutation in a biological sample.
  • a method for detecting a disease or susceptibility to disease associated with abnormal expression of human phosphatase 9 protein in vitro which comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, or detecting a mutation in a biological sample.
  • the amount or biological activity of a polypeptide of the invention comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample.
  • the invention also relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a polypeptide of the invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
  • the present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention in the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of human phosphatase 9.
  • Nucleic acid sequence refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand.
  • amino acid sequence refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof.
  • amino acid sequence in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide” or “protein” does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
  • a “variant" of a protein or polynucleotide refers to an amino acid sequence having one or more amino acids or nucleotide changes or a polynucleotide sequence encoding it.
  • the changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence.
  • Variants can have "conservative" changes, in which the amino acid substituted has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine.
  • Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
  • “Deletion” refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
  • Insertion refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule.
  • Replacement refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
  • Bioactivity refers to a protein that has the structure, regulation, or biochemical function of a natural molecule.
  • immunologically active refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind to specific antibodies in a suitable animal or cell.
  • An "agonist” refers to a molecule that, when combined with human phosphatase 9, causes a change in the protein to regulate the activity of the protein.
  • An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind human phosphatase 9.
  • Antagonist refers to a molecule that, when combined with human phosphatase 9, blocks or regulates the biological or immunological activity of human phosphatase 9.
  • Antagonists and inhibitors can include proteins, nucleic acids, carbohydrates or any other molecule that can bind human phosphatase 9.
  • Regular refers to a change in the function of human phosphatase 9, including an increase or decrease in protein activity, a change in binding characteristics, and any other biological, functional, or immune properties of human phosphatase 9.
  • substantially pure is meant substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated.
  • Those skilled in the art can purify human phosphatase 9 using standard protein purification techniques.
  • Substantially pure human phosphatase 9 produces a single main band on a non-reducing polyacrylamide gel.
  • the purity of the human phosphatase 9 polypeptide can be analyzed by amino acid sequence.
  • “Complementary” or “complementary” refers to polynucleotides that naturally bind through base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "CTG-A" can be combined with the complementary sequence "GAC-T".
  • the complementarity between two single-stranded molecules may be partial or complete.
  • the degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
  • “Homology” refers to the degree of complementarity and can be partially homologous or completely homologous.
  • Partial homology refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Southern blotting or Nor thern blotting, etc.) under conditions of reduced stringency.
  • Substantially homologous sequences or hybridization probes can compete and inhibit the binding of a completely homologous sequence to a target sequence under conditions of reduced stringency. This does not mean that conditions with reduced stringency allow non-specific binding, because conditions with reduced stringency require that the two sequences interact with each other specifically or selectively.
  • Percent identity refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene sof tware package, DNASTAR, Inc., Madi son Wis.). The MEGALIGN program can compare two or more sequences according to different methods such as the Clus ter method (Higgs, DG and PM Sharp (1988) Gene 73: 237-244). 0 The C lus ter method checks the distance between all pairs. The groups of sequences are arranged into clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula: The number of matching residues between sequence A and sequence B
  • the number of residues in sequence A-the number of spacer residues in sequence A-the number of spacer residues in sequence B can also be determined by the Cluster method or using methods known in the art such as Jotun Hein. (He in J., (1990) Methods in emzumology 183: 625-645).
  • Similarity refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences.
  • Amino acids used for conservative substitutions for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
  • Antisense refers to a nucleotide sequence that is complementary to a particular DM or RNA sequence.
  • Antisense strand refers to a nucleic acid strand that is complementary to the “sense strand”.
  • Derivative refers to a chemical modification of HFP or a nucleic acid encoding it. This chemical modification may be the replacement of a hydrogen atom with an alkyl, acyl or amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological properties of natural molecules.
  • Antibody refers to a complete antibody molecule and its fragments, such as Fa, F (ab ') 2 and Fv, which can specifically bind to the epitope of human phosphatase 9.
  • a “humanized antibody” refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
  • isolated refers to the removal of matter from its original environment (for example, its natural environment if it is naturally occurring).
  • a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living thing, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system.
  • Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not a component of its natural environment, they are still isolated.
  • isolated refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment).
  • polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
  • isolated human phosphatase 9 means that human phosphatase 9 is substantially free of other proteins, lipids, carbohydrates, or other substances naturally associated with it. Those skilled in the art can purify human phosphatase 9 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human phosphatase 9 polypeptide can be analyzed by amino acid sequence.
  • the present invention provides a new polypeptide, human phosphatase 9, which basically consists of the amino acid sequence shown in SEQ ID NO: 2.
  • the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide.
  • the polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant technology. Depending on the host used in the recombinant production protocol, the polypeptides of the invention may be glycosylated or may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
  • the invention also includes fragments, derivatives and analogs of human phosphatase 9.
  • fragment refers to a polypeptide that substantially maintains the same biological function or activity of the human phosphatase 9 of the present invention.
  • a fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution Amino acids may or may not be coded by the genetic code Code; or ( ⁇ ) such a type in which a group on one or more amino acid residues is substituted with another group to include a substituent; or ( ⁇ ⁇ ) such a type in which a mature polypeptide and another A compound (such as a compound that extends the half-life of a polypeptide, such as polyethylene glycol); or (IV) a polypeptide sequence (such as a leader sequence or a secreted sequence or used for purification) in which an additional amino acid sequence is fused into a mature polypeptide The sequence of this polypeptide or protease sequence) As set forth herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
  • the present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2.
  • the polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1.
  • the polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a full-length polynucleotide sequence of 1842 bases and its open reading frame of 299-599 encodes 86 amino acids.
  • this polypeptide has a similar expression profile to human phosphatase 79, and it can be deduced that the human phosphatase 9 has a similar function to human phosphatase 79.
  • the polynucleotide of the present invention may be in the form of DNA or RNA.
  • DM forms include cDNA, genomic DNA or synthetic DNA.
  • DNA can be single-stranded or double-stranded.
  • DNA can be coding or non-coding.
  • the coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant.
  • a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
  • the polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
  • polynucleotide encoding a polypeptide refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.
  • the invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention.
  • Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants.
  • an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
  • the invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences).
  • the invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the invention under stringent conditions.
  • “strict conditions” means: (1) at lower ions Intensity and hybridization and elution at higher temperatures, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) adding a denaturant such as 50% (v / v) formamide, 0.1% calf Serum / 0.1% Ficoll, 42 ° C, etc .; or (3) hybridization occurs only when the identity between the two sequences is at least 95% or more, and more preferably 97% or more.
  • the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
  • nucleic acid fragments that hybridize to the sequences described above.
  • a "nucleic acid fragment” contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 cores Glycylic acid or more.
  • Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding human phosphatase 9.
  • polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
  • the specific polynucleotide sequence encoding the human phosphatase 9 of the present invention can be obtained by various methods.
  • polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
  • the DNA fragment sequence of the present invention can also be obtained by the following methods: 1) isolating the double-stranded DNA sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
  • genomic DM is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences.
  • the standard method for isolating cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library.
  • MRM existing method of extracting more mature technology kits are also available from commercial sources (Qiagene)
  • ⁇ cDNA library is constructed conventional method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory New York, 1989).
  • Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When polymerase reaction technology is used in combination, even very small expression products can be cloned.
  • the genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (1) DM-DNA or DNA-RNA hybridization; (2) the presence or loss of marker gene function; (3) measuring the level of human phosphatase 9 transcripts; (4) passing Immunological techniques or assays for biological activity to detect gene-expressed protein products. The above methods can be used singly or in combination.
  • the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides.
  • the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides.
  • the probes used here are usually the gene sequence information of the present invention Based on chemically synthesized DNA sequences. The genes or fragments of the present invention can of course be used as probes.
  • DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
  • immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA) can be used to detect the protein product expressed by the human phosphatase 9 gene.
  • the RACE method RACE-rapid cDNA end rapid amplification method
  • the primers used for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein.
  • the amplified DNA / RNA fragments can be isolated and purified by conventional methods such as by gel electrophoresis.
  • polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, the sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
  • the present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell genetically engineered using the vector of the present invention or directly using a human phosphatase 9 coding sequence, and a method for producing the polypeptide of the present invention by recombinant technology.
  • a polynucleotide sequence encoding human phosphatase 9 can be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention.
  • vector refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art.
  • Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors expressed in bacteria (Rosenberg, et al.
  • any plasmid and vector can be used to construct a recombinant expression vector.
  • An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
  • the expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenovirus enhancers.
  • the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
  • selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
  • GFP fluorescent protein
  • tetracycline or ampicillin resistance for E. coli.
  • a polynucleotide encoding human phosphatase 9 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector.
  • host cell refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell.
  • Escherichia coli, Streptomyces bacterial cells such as Salmonella typhimurium
  • fungal cells such as yeast
  • plant cells insect cells
  • fly S2 or Sf 9 animal cells
  • animal cells such as CH0, COS or Bowes melanoma cells.
  • Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art.
  • the host is a prokaryote such as E. coli
  • competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with CaCl.
  • the steps used are well known in the art.
  • the alternative is to use MgC l 2 .
  • transformation can also be performed by electroporation.
  • the host is a eukaryote, the following DM transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
  • the polynucleotide sequence of the present invention can be used to express or produce recombinant human phosphatase 9 by conventional recombinant DNA technology (Scence, 1984; 224: 1431). Generally there are the following steps:
  • the medium used in the culture may be selected from various conventional mediums. Culture is performed under conditions suitable for host cell growth. When the host cell grows to After cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
  • a suitable method such as temperature conversion or chemical induction
  • the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell.
  • recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.
  • conventional renaturation treatment protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromat
  • FIG. 1 is a comparison diagram of gene chip expression profiles of human phosphatase 9 and human phosphatase 79 of the present invention.
  • the upper graph is a graph of the expression profile of human phosphatase 9 and the lower graph is the graph of the expression profile of human phosphatase 79.
  • 1 indicates fetal kidney
  • 2 indicates fetal large intestine
  • 3 indicates fetal small intestine
  • 4 indicates fetal muscle
  • 5 indicates fetal brain
  • 6 indicates fetal bladder
  • 7 indicates unstarved L02
  • 8 indicates L02 +, lhr, As 3+
  • 9 indicates ECV304 PMA-
  • 10 means ECV304 PMA +
  • 11 means fetal liver
  • 12 means normal liver
  • 13 means thyroid
  • 14 means skin
  • 15 means fetal lung
  • 16 means lung
  • 17 means lung cancer
  • 18 means fetal spleen
  • 19 means spleen
  • 20 Indicates prostate
  • 21 indicates fetal heart
  • 22 indicates heart
  • 23 indicates muscle
  • 24 indicates testis
  • 25 indicates fetal thymus
  • 26 indicates thymus.
  • Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of isolated human phosphatase 9. 9kDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The best way to implement the invention
  • CDNA was synthesized using fetal brain total RNA as a template and oligo-dT as a primer for reverse transcription reaction. After purification using Qiagene's kit, the following primers were used for PCR amplification:
  • Primerl 5'- GGGGAGTAGGGGTGTGCGGCTGGC-3 '(SEQ ID NO: 3)
  • Primer2 5'- AGGAAAACAATCTTAATATTTTAT-3 '(SEQ ID NO: 4)
  • Primerl is a forward sequence starting at lbp of the 5th end of SEQ ID NO: 1;
  • Prime is the 3rd, reverse sequence of SEQ ID NO: 1.
  • Amplification conditions 50 mmol / L KC1, 10 mmol / L in a 50 ⁇ l reaction volume
  • Tris-Cl (pH 8.5), 1.5ramol / L MgCl 2 , 200 ⁇ mol / L dNTP, lOpmol primer, 1U Taq DNA polymerase (Clontech).
  • the reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) under the following conditions for 25 cycles: 94 ° C 30sec; 55 ° C 30sec; 72 ° C 2min.
  • ⁇ -actin was set as a positive control and template blank was set as a negative control.
  • the amplified product was purified using a QIAGEN kit and ligated to a pCR vector using a TA cloning kit (Invitrogen).
  • the DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as that of 1 to 1842bp shown in SEQ ID NO: 1.
  • Example 3 Northern blot analysis of human phosphatase 9 gene expression:
  • RNA extraction in one step [Anal. Biochem 1987, 162, 156-159] 0
  • This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidinium isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1) are added. ), Mix and centrifuge. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70 % ethanol, dried and dissolved in water.
  • the 32P- labeled probes (about 2 x l0 6 cpm / ml) and RNA was transferred to a nitrocellulose membrane overnight at 42 ° C in a hybridization solution, the solution comprising 50% formamide - 25mM KH 2 P0 4 (pH 7.4)-5 x SSC- 5 x Denhardt's solution and 200 ⁇ ⁇ / ⁇ salmon sperm DNA. After hybridization, the filter was washed in 1 x SSC-0.1% SDS at 55 ° C for 30 min. Then, Phosphor Imager was used for analysis and quantification.
  • Example 4 In vitro expression, isolation and purification of recombinant human phosphatase 9
  • Primer3 5'-CATGCTAGCATGGGTAGAAAAGATGCTGCTACT-3 '(Seq ID No: 5)
  • Primer4 5,-CATGGATCCCTAATCTTCATCTTGGTCCAGATC- 3, (Seq ID No: 6)
  • the 5' ends of these two primers contain Nhel and BamHI restriction sites, respectively.
  • the coding sequences of the 5 'and 3' ends of the gene of interest are followed, respectively.
  • the Nhel and BamHI restriction sites correspond to the selectivity within the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). Digestion site.
  • the PCR reaction was performed using the pBS-0217d07 plasmid containing the full-length target gene as a template.
  • the PCR reaction conditions were as follows: a total volume of 50 ⁇ containing 10 pg of pBS-0217d07 plasmid, primers Primer-3 and Primer-4 of 10 pmol, and Advantage polymerase Mix (Clontech) 1 ⁇ 1 respectively. Cycle parameters: 94 ° C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Nhel and BamHI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase.
  • the ligation product was transformed into E. coli DH5 CX using the calcium chloride method. After being cultured overnight on LB plates containing kanamycin (final concentration 30 ⁇ g / ml), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0217d07) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method. In containing kanamycin (final concentration of 30 ⁇ g / ml) of LB liquid medium, host strain BL21 (P ET-0217d07) at 37. C.
  • Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways.
  • the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected.
  • the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissue or pathology. Whether the expression in tissue cells is abnormal.
  • the purpose of this example is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method.
  • Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They all use the same steps to hybridize the fixed polynucleotide sample to the filter.
  • the sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer to saturate the non-specific binding site of the sample on the filter with the carrier and the synthesized polymer.
  • the pre-hybridization solution is then replaced with a hybridization buffer containing the labeled probe and incubated to hybridize the probe to the target nucleic acid.
  • the unhybridized probes are removed by a series of membrane washing steps. This embodiment uses higher intensity membrane washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals.
  • the probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention
  • the polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment.
  • the spot imprint method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
  • the preferred range of probe size is 18-50 nucleotides
  • Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
  • Probe 1 (pr 0 bel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
  • Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
  • PBS phosphate buffered saline
  • phenol extraction method for DNA Steps 1) Wash the cells with 1-10 ml of cold PBS and centrifuge at 1000g for 10 minutes. 2) with cold cell lysate pelleted cells were resuspended (lx 10 8 cells / ml) Minimum application lOOul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is directly added to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) 5 (TC incubation reaction for 1 hour or shaking gently at 37 ° C overnight.
  • step 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
  • NC membrane nitrocellulose membrane
  • the sample membrane was placed in a plastic bag, and 3- 10 mg of prehybridization solution (10xDenhardt's; 6xSSC, 0.1 mg / ml) was added.
  • CT DNA (calf thymus DNA).
  • X-ray autoradiography -70 ° C
  • X-ray autoradiography compression time depends on the radioactivity of the hybrid spot
  • Gene chip or gene micro-matrix is a new technology currently being developed by many national laboratories and large pharmaceutical companies. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass. , Silicon and other carriers, and then use fluorescence detection and computer software to compare and analyze the data, in order to achieve the purpose of rapid, efficient, high-throughput analysis of biological information.
  • the polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; searching for and screening new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases .
  • the specific method steps have been reported in the literature in various ways.
  • a total of 4,000 polynucleotide sequences of various full-length cDNAs are used as target DNA, including the polynucleotide of the present invention. They were amplified by PCR respectively. After purification, the concentration of the amplified product was adjusted to about 500 ng / ul, and spotted on a sloped medium using a Cartesian 7500 spotter (purchased from Cartesian Company, USA) The distance from the point is 280 ⁇ ⁇ . The spotted slides were hydrated, dried, and cross-linked in a UV cross-linker. After elution, the slides were fixed to fix the DM on the glass slides to prepare chips. The specific method steps have been variously reported in the literature. The post-spot processing steps of this embodiment are:
  • Total mRNA was extracted from human mixed tissues and specific tissues (or stimulated cell lines) in one step, and the mRNA was purified with Ol igotex mRNA Midi Ki t (purchased from QiaGen), and another 1 J was separated by reverse transcription.
  • Cy3dUTP (5-Amino-propargy l-2'-deoxyuridine 5'-tr iphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamac ia Biotech), a fluorescent reagent, was used to label the mRNA of human mixed tissue, and the fluorescent reagent Cy5dUTP (5 -Amino- propargyl- 2'- deoxyur idine 5'-tr iphate coupled to Cy5 f luorescent dye, purchased from Amersham Phamac ia Biotech Company, labeled the specific tissue (or stimulated cell line) mRNA of the body, purified and prepared for detection needle.
  • Cy3dUTP 5-Amino-propargy l-2'-deoxyuridine 5'-tr iphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamac ia Biotech
  • Cy5dUTP 5 -Amino- propargyl- 2'- deoxyur idine 5
  • Hybridization in Solut ion (purchased from TeleChem) was performed for 16 hours. After washing at room temperature with a washing solution (lx SSC, 0.2% SDS), scanning was performed with a ScanArray 3000 scanner (purchased from Genera Scanning). The scanned image was analyzed and processed with Imagene software (Biodiscovery, USA) to calculate the Cy3 / Cy5 ratio of each point.
  • the above specific tissues are thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv304 cell line, PMA-Ecv304 cell line, non-starved L02 cell line, L02 cell line stimulated by arsenic for 1 hour, L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, Fetal lung and fetal heart.
  • polypeptides of the present invention as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat malignant tumors, adrenal deficiency, skin diseases, various types of inflammation, HIV infection, and immune diseases.
  • the polypeptide (human phosphatase 9) of the present invention specifically hydrolyzes the fatty acid at the C 2 position of the phospholipid molecule, thereby regulating the phospholipid level of the cell. It has been found through research that the polypeptide of the present invention also has many biological functions, including but not It is limited to: (1) regulating the level of phosphatidylcholine (PtdCho) in cells by phospholipase PLA2 to regulate cell survival and development ability; (2) treating acute ischemic kidney disease by regulating the expression of phospholipase PLA2 (3) Human PLA2 plays a role in important cellular processes such as the digestion and metabolism of phospholipids and the synthesis of precursors to inflammatory reactions; (4) Human phospholipase PLA2 also has a certain effect on schizophrenia.
  • PtdCho phosphatidylcholine
  • Human PLA2 plays a role in important cellular processes such as the digestion and metabolism of phospholipids and the synthesis of precursors to inflammatory reactions.
  • the antagonist protein of the polypeptide of the present invention is effective for the treatment of diseases including arthritis, allergic inflammation, dermatitis, ophthalmitis, and collagenitis, and can simultaneously avoid various side effects caused by compound-treated inflammation.
  • the polypeptide of the present invention can be used for the diagnosis and treatment of many diseases, such as malignant tumors, endocrine system diseases, neurological diseases, immune diseases, human acquired immune deficiency syndrome (AIDS), and the like.
  • diseases such as malignant tumors, endocrine system diseases, neurological diseases, immune diseases, human acquired immune deficiency syndrome (AIDS), and the like.
  • AIDS human acquired immune deficiency syndrome
  • Developmental disorders that can be treated using the polypeptides of the present invention include: spina bifida, craniocerebral fissure, anencephaly, malocclusion, foramen deformity, Down syndrome, congenital hydrocephalus, aqueduct malformation, cartilage dysgenesis Dwarfism, spinal epiphyseal dysplasia, pseudochondral dysplasia, Langer-Gied ion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, upper urethral tract, crypt, accompanied by short stature deformity syndrome ( Such as Conrad i syndrome and Danbolt-Clos s syndrome), congenital glaucoma or cataract, congenital lens position abnormality, congenital blepharoplasia, retinal dysplasia, congenital optic atrophy, congenital sensory neurological hearing loss , Cracked hands and feet, teratology, Wi lliams syndrome, Al ag il le syndrome,
  • Various tumors that can be treated using the polypeptide of the present invention include: including epithelial tissue (such as basal epithelium, squamous epithelium, mucus cells, etc.), (such as fibrous tissue, adipose tissue, cartilage tissue, smooth muscle tissue, blood vessels and lymphatic endothelial cells Tissue, etc.), hematopoietic tissue (such as B cells, T cells, histiocytes, etc.), central nervous tissue, peripheral nerve tissue, endocrine tissue, gonadal tissue, special tissue (such as dental tissue, etc.) derived tumors, for example, Stomach cancer, liver cancer, colorectal cancer, breast cancer, lung cancer, prostate cancer, cervical cancer, pancreatic cancer, esophageal cancer, etc.
  • epithelial tissue such as basal epithelium, squamous epithelium, mucus cells, etc.
  • fibrous tissue such as fibrous tissue, adipose tissue, cartilage tissue, smooth
  • the polypeptide of the present invention is also an immunomodulatory agent and has an immune promoting or immunosuppressing effect.
  • the polypeptides of the present invention are useful in the treatment of a number of diseases, including non-response to the immune response, or abnormal immune response, or ineffective host defense.
  • the polypeptides and antibodies of the present invention also have effects on damage, defects or disorders of immune tissues, especially for hematopoietic diseases (such as malignant anemia), skin diseases (such as psoriasis), and autoimmune diseases (such as rheumatoid arthritis ), Radiation diseases and the production and regulation of immune lymphocytes are extremely closely related.
  • Inflammatory reactions that the antagonists of the polypeptides of the present invention can use for treatment include: allergic reactions, bronchial asthma, allergic pneumonia, adult respiratory distress syndrome, pulmonary eosinophilia, sarcoidosis, rheumatoid arthritis, Rheumatoid arthritis, osteoarthritis, cholecystitis, glomerulonephritis, immune complex Types of glomerulonephritis, acute anterior uveitis, osteoporosis, dermatomyositis, urticaria, atopic dermatitis, hemochromatosis, polymyositis, Addison's disease, Graves' disease, chronic Active hepatitis, intestinal emergency syndrome, atrophic gastritis, systemic lupus erythematosus, myasthenia gravis, cerebral spinal cord multiple sclerosis, Guillain-Barre syndrome, intracranial granulomatosis, Wegener granulomatos
  • the invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) human phosphatase 9.
  • Agonists enhance biological functions such as human phosphatase 9 stimulating cell proliferation, while antagonists block and treat disorders related to excessive cell proliferation, such as various cancers.
  • mammalian cells or membrane preparations expressing human phosphatase 9 can be cultured with labeled human phosphatase 9 in the presence of a drug. The ability of the drug to increase or block this interaction is then measured.
  • Antagonists of human phosphatase 9 include antibodies, compounds, receptor deletions, and the like that have been screened.
  • An antagonist of human phosphatase 9 can bind to human phosphatase 9 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide so that the polypeptide cannot perform a biological function.
  • human phosphatase 9 When screening compounds as antagonists, human phosphatase 9 can be added to a bioanalytical assay to determine whether the compound is an antagonist by measuring the effect of the compound on the interaction between human phosphatase 9 and its receptor. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds.
  • Polypeptide molecules capable of binding to human phosphatase 9 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. When screening, generally 9 molecules of human phosphatase should be labeled.
  • the present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen.
  • These antibodies can be polyclonal or monoclonal antibodies.
  • the invention also provides antibodies against human phosphatase 9 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments produced by Fab expression libraries.
  • Polyclonal antibodies can be produced by injecting human phosphatase 9 directly into immunized animals (such as rabbits, mice, rats, etc.).
  • immunized animals such as rabbits, mice, rats, etc.
  • adjuvants can be used to enhance the immune response, including but not limited to Freund's adjuvant.
  • Techniques for preparing monoclonal antibodies to human phosphatase 9 include, but are not limited to, hybridoma technology (Kohler and
  • Anti-human phosphatase 9 antibody can be used in immunohistochemistry to detect human phosphate in biopsy specimens Enzyme 9.
  • Monoclonal antibodies that bind to human phosphatase 9 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
  • Antibodies can also be used to design immunotoxins that target a particular part of the body.
  • human phosphatase 9 high affinity monoclonal antibodies can covalently bind to bacterial or plant toxins (such as diphtheria toxin, ricin, ormosine, etc.).
  • a common method is to attack the amino group of the antibody with a thiol cross-linking agent such as SPDP, and toxins are bound to the antibody through disulfide exchange.
  • This hybrid antibody can be used to kill human phosphatase 9 positive cells.
  • the antibodies of the present invention can be used to treat or prevent diseases related to human phosphatase 9.
  • Administration of an appropriate dose of the antibody can stimulate or block the production or activity of human phosphatase 9.
  • the invention also relates to a diagnostic test method for quantitative and localized detection of human phosphatase 9 levels.
  • tests are well known in the art and include FISH assays and radioimmunoassays.
  • the level of human phosphatase 9 detected in the test can be used to explain the importance of human phosphatase 9 in various diseases and to diagnose diseases in which human phosphatase 9 plays a role.
  • polypeptide of the present invention can also be used for peptide mapping analysis.
  • the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry.
  • the polynucleotide encoding human phosphatase 9 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormalities in cell proliferation, development or metabolism caused by the non-expression or abnormal / inactive expression of human phosphatase 9.
  • Recombinant gene therapy vectors (such as viral vectors) can be designed to express mutated human phosphatase 9 to inhibit endogenous human phosphatase 9 activity.
  • a mutant human phosphatase 9 may be a shortened human phosphatase 9 lacking a signaling domain, and although it can bind to downstream substrates, it lacks signaling activity.
  • the recombinant gene therapy vector can be used for treating diseases caused by abnormal expression or activity of human phosphatase 9.
  • Expression vectors derived from viruses such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus and the like can be used to transfer a polynucleotide encoding human phosphatase 9 into cells.
  • Methods for constructing recombinant viral vectors carrying a polynucleotide encoding human phosphatase 9 can be found in the existing literature (Sambrook, et al.).
  • a recombinant polynucleotide encoding human phosphatase 9 can be packaged into liposomes and transferred into cells.
  • Methods for introducing a polynucleotide into a tissue or cell include: injecting the polynucleotide directly into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
  • a vector such as a virus, phage, or plasmid
  • Oligonucleotides including antisense RNA and DNA
  • ribozymes that inhibit human phosphatase 9 mRNA are also within the scope of the present invention.
  • a ribozyme is an enzyme-like RNA molecule that can specifically decompose a specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation.
  • Antisense RNA and DNA Ribozymes and ribozymes can be obtained by any existing RNA or DNA synthesis technology. For example, the technology of solid phase phosphate amide chemical synthesis to synthesize oligonucleotide has been widely used.
  • Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the ribonucleosides are connected by phosphorothioate or peptide bonds instead of phosphodiester bonds.
  • the polynucleotide encoding human phosphatase 9 can be used for the diagnosis of diseases related to human phosphatase 9.
  • a polynucleotide encoding human phosphatase 9 can be used to detect the expression of human phosphatase 9 or the abnormal expression of human phosphatase 9 in a disease state.
  • a DNA sequence encoding human phosphatase 9 can be used to hybridize biopsy specimens to determine the expression of human phosphatase 9.
  • Hybridization techniques include Southern blotting, Nor thern blotting, and in situ hybridization. These techniques and methods are all mature and open technologies, and related kits are commercially available.
  • Part or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray (Mic roar r ay) or a DM chip (also known as a "gene chip") for analyzing differential expression analysis of genes in tissues and Genetic diagnosis.
  • Human phosphatase 9 specific primers can also be used to detect human phosphatase 9 transcripts by in vitro amplification of RNA-polymerase chain reaction (RT-PCR).
  • Detection of mutations in the human phosphatase 9 gene can also be used to diagnose human phosphatase 9-related diseases.
  • Human phosphatase mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to normal wild-type human phosphatase 9 DNA sequences. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect the expression of proteins. Therefore, Nor thern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
  • the sequences of the invention are also valuable for chromosome identification.
  • the sequence specifically targets a specific position on a human chromosome and can hybridize to it.
  • specific sites for each gene on the chromosome need to be identified.
  • only a few chromosome markers based on actual sequence data are available for marking chromosome positions.
  • an important first step is to locate these DNA sequences on a chromosome.
  • PCR primers (preferably 15-35 bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those heterozygous cells containing the human gene corresponding to the primer will produce amplified fragments.
  • PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes.
  • oligonucleotide primers of the present invention by a similar method, a set of fragments from a specific chromosome or a large number of genomic clones can be used to achieve sublocalization.
  • Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct a chromosome-specific c library. Fluorescent in situ hybridization (FI SH) of cDNA clones and metaphase chromosomes allows precise chromosomal localization in one step.
  • FI SH Fluorescent in situ hybridization
  • the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mende l ian
  • the difference in cDNA or genomic sequence between the affected and unaffected individuals needs to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in chromosomes, such as deletions or translocations that are visible at the chromosomal level or detectable with cDNA sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the chromosomal region associated with the disease can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution Capacity and each 20kb corresponds to a gene).
  • the polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier.
  • suitable pharmaceutical carrier can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof.
  • the composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
  • the present invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention.
  • a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention.
  • these containers there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which reminders permit their administration on the human body by government agencies that manufacture, use, or sell them.
  • the polypeptide of the present invention can be used in combination with other therapeutic compounds.
  • the pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration.
  • Human phosphatase 9 is administered in an amount effective to treat and / or prevent a specific indication.
  • the amount and dosage range of human phosphatase 9 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.

Abstract

The invention discloses a new kind of polypeptide-HOMO phosphatase 9 and polynucleotide encoding said polypeptide and a process for producing said polypeptide by DNA recombinant methods. It also discloses the method of applying the polypeptide for the treatment of various kinds of diseases, such as cancer, hemopathy, HIV infection, immune disease and phlogosis, antagonist and the therapeutic use of the polypeptide is also disclosed. In addition, it refers to the use of polynucleotide encoding said HOMO phosphatase 9.

Description

一种新的多肽一一人磷酸蒔 9和编码这种多肽的多核苷酸 技术领域  A new polypeptide-human diphosphate 9-and a polynucleotide encoding the polypeptide TECHNICAL FIELD
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一人磷 酸酶 9, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多核苷酸和多肽的制 备方法和应用。 背景技术  The present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, human phosphatase 9, and a polynucleotide sequence encoding the polypeptide. The invention also relates to methods and applications for preparing such polynucleotides and polypeptides. Background technique
磷酸甘油脂 (简称磷脂) 种类繁多, 体内周转更新快, 是细胞膜、 细胞器 膜的主要组成部分。 磷脂组成的变化对细胞膜流动性, 膜蛋白的活性等细胞生 理功能有重要的调节作用。 磷脂在生物体内, 经水解为甘油、 脂肪酸、 磷酸和 各种氨基醇等。  There are many types of phosphoglycerides (phospholipids for short), and the turnover in the body is fast. It is the main component of cell membrane and organelle membrane. Changes in phospholipid composition have important regulatory effects on cell membrane fluidity, membrane protein activity, and other cell physiological functions. Phospholipids are hydrolyzed into glycerol, fatty acids, phosphoric acid and various amino alcohols in the body.
磷脂酶分为四类, 即磷脂酶 A , A2, C和 D, 它们分别作用于磷脂不同的脂 键。 其中磷脂酶 A1专一地水解磷脂分子内 C1位的脂肪酸,磷脂酶 42专一地水 解磷脂分子 C2位脂肪酸, 而磷脂酶 C和!)则对磷酸双脂键的水解起作用。 There are four types of phospholipases, namely phospholipases A, A 2 , C, and D, which act on different lipid bonds of phospholipids, respectively. Wherein the fatty acid at position C1 phospholipase A1 exclusively phospholipid molecules, phospholipase 42 exclusively hydrolyzed phospholipid molecules C 2 fatty acid position, and the phospholipase C! ) Has an effect on the hydrolysis of phosphate double lipid bonds.
磷脂酶 Al, A2和 C虽然有其催化底物的特异性, 但在体内更可能是协同作 用的, 甚至在功能上可能在一定条件下存在互补的作用。 在体外实验中 PLA1与 PLA2可以在一定条件下交换彼此的底物。 在体内, PLA1、 PLA2和 PLC也经常被 发现形成一条磷脂水解反应系统链而存在。  Although phospholipases Al, A2, and C have the specificity of their catalytic substrates, they are more likely to work synergistically in the body, and may even be functionally complementary under certain conditions. In in vitro experiments PLA1 and PLA2 can exchange substrates with each other under certain conditions. In the body, PLA1, PLA2, and PLC are often found to form a chain of phospholipid hydrolysis reaction systems.
最近的研究已经克隆了一种编码人的磷脂酶 PLA2的 mRNA , 对人的磷脂酶 Recent research has cloned an mRNA encoding human phospholipase PLA2.
PLA2的结构也有了一定的了解,编码这种人的磷脂酶 PLA2的基因被定位于人染 色体 22ql 3. 1, Nor thern杂交的结果表明, 人的磷脂酶 PLA2的 mRNA在各种人 组织中均有表达, 特别是在心脏、 脑、 骨骼肌、 前列腺、 脊髓、 甲状腺等组织 中显著表达, 研究证明在不同组织中人的磷脂酶 PLA2至少有 4种不同的转录调 节因子, 因此人的磷脂酶 PLA2在不同的转录调节因子存在时, 会导致人的磷脂 酶 PLA2不同的表达和细胞定位。 ( Eur J B i ochem 1999 Jun; 262 (2) : 575-85 ) 对结构的深入研究发现, 人的磷脂酶 PLA2有 C末端的脂肪酶结构域 The structure of PLA2 has also been understood. The gene encoding this human phospholipase PLA2 is located on the human chromosome 22ql 3.1. The results of Nor thern hybridization show that the mRNA of human phospholipase PLA2 is uniform in various human tissues It is expressed, especially in heart, brain, skeletal muscle, prostate, spinal cord, thyroid and other tissues. Studies have shown that human phospholipase PLA2 has at least 4 different transcription regulators in different tissues, so human phospholipase PLA2 in the presence of different transcription regulators will lead to different expression and cellular localization of human phospholipase PLA2. (Eur J Biochem 1999 Jun; 262 (2): 575-85) In-depth study of the structure found that human phospholipase PLA2 has a C-terminal lipase domain
( GXSXG ) , 也有 N末端重复的锚蛋白序列。 N末端重复的锚蛋白序列与蛋白和 蛋白之间的相互作用有关。 (J B i o l Chem 1998 Jan 2; 273 (1): 207-14 )  (GXSXG), also has an ankyrin sequence that repeats at the N-terminus. The N-terminal repeating ankyrin sequence is involved in protein-to-protein interactions. (J B i o l Chem 1998 Jan 2; 273 (1): 207-14)
磷脂酰胆碱(PtdCho)是哺乳动物细胞膜中最重要的一种磷脂, 它可以调节 细胞的生存和发育能力, 而磷脂酶 PLA2可以调控 PtdCho在细胞中的水平。 ( B i och im B i ophys Ac ta 1999 Ju l 9; 1439 (1): 77-88 ) l 研究发现, 在缺血性细胞损伤中, 膜的磷酸脂化是由于磷脂酶 PLA2的活性 提高, 磷脂酶 PLA2可以用于治疗急性缺血性肾脏疾病。 (Curr Op i n Nephro l Hyper t ens 1999 Ju l ; 8 (4) : 473-7 ) Phosphatidylcholine (PtdCho) is the most important phospholipid in mammalian cell membranes. It can regulate the survival and development of cells, while phospholipase PLA2 can regulate the level of PtdCho in cells. (B i och im B i ophys Ac ta 1999 Ju l 9; 1439 (1): 77-88) l Studies have found that in ischemic cell injury, the phosphorylation of the membrane is due to the increased activity of phospholipase PLA2, which can be used to treat acute ischemic kidney disease. (Curr Op in Nephro l Hyper Tens 1999 Ju l; 8 (4): 473-7)
研究证明, 人的磷脂酶 PLA2对精神分裂症也有一定的作用。 (Arch Gen Ps ych i a t ry. 1998 Aug; 55 (8) : 752-3 )  Studies have shown that human phospholipase PLA2 also has a certain effect on schizophrenia. (Arch Gen Ps ych i a try. 1998 Aug; 55 (8): 752-3)
很多磷脂酶 A2 ( PLA2 ) 是从蛇、 蜥蜴、 蜜蜂和哺乳动物中获得的。 作为一 种突触前的神经毒素, 毒蛇的 PLA2能够阻断乙酰胆碱从神经末端的释放从而抑 制神经肌肉的传导。 人类 PLA2在磷脂的消化及代谢以及炎症反应前体合成等重 要细胞过程中起作用。 临床研究证明血浆与关节润滑液中 PLA2的水平增高与关 节炎发病强度表现出正相关, 而一些细胞内毒素与免疫调节因子对 PLA2的作用 有关键性影响。 研究还表明 PLA2的拮抗性蛋白对与包括关节炎、 过敏性炎症、 皮肤炎、 眼炎以及胶原炎等疾病的治疗有效, 并能同时避免由化合物治疗炎症 引起的种种副作用。  Many phospholipases A2 (PLA2) are obtained from snakes, lizards, bees and mammals. As a presynaptic neurotoxin, PLA2 of the viper can block the release of acetylcholine from the nerve endings and thus inhibit neuromuscular conduction. Human PLA2 plays a role in important cellular processes such as the digestion and metabolism of phospholipids and the synthesis of inflammatory response precursors. Clinical studies have shown that increased levels of PLA2 in plasma and joint lubricating fluids have a positive correlation with the intensity of arthritis, and some cellular endotoxins and immunoregulatory factors have a critical effect on the effects of PLA2. Studies have also shown that PLA2 antagonist protein is effective for the treatment of diseases including arthritis, allergic inflammation, dermatitis, ophthalmitis, and collagenitis, and can simultaneously avoid various side effects caused by compound treatment of inflammation.
通过基因芯片的分析发现, 在胸腺、 睾丸、 肌肉、 脾脏、 肺、 皮肤、 甲状腺、 肝、 PMA+的 Ecv 304细胞株、 PMA -的 Ecv 304细胞株、 未饥饿的 L 02细胞株、 砷 刺激 1小时的 L02细胞株、 砷刺激 6小时的 L02细胞株前列腺、 心、 肺癌、 胎 膀胱、 胎小肠、 胎大肠、 胎胸腺、 胎肌、 胎肝、 胎肾、 胎脾、 胎脑、 胎肺以及 胎心中, 本发明的多肽的表达谱与人磷酸酶 79的表达谱非常近似, 因此二者功 能也可能类似。 本发明被命名为人磷酸酶 9。  Gene chip analysis revealed that in the thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv 304 cell line, PMA-Ecv 304 cell line, unstarved L 02 cell line, arsenic stimulation 1 L02 cell line for hours, L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, fetal lung, and In the fetal heart, the expression profile of the polypeptide of the present invention is very similar to the expression profile of human phosphatase 79, so their functions may also be similar. The invention is named human phosphatase 9.
由于如上所述人磷酸酶 9蛋白在调节细胞分裂和胚胎发育等机体重要功能中 起重要作用, 而且相信这些调节过程中涉及大量的蛋白, 因而本领域中一直需 要鉴定更多参与这些过程的人磷酸酶 9蛋白, 特别是鉴定这种蛋白的氨基酸序 列。 新人磷酸酶 9蛋白编码基因的分离也为研究确定该蛋白在健康和疾病状态 下的作用提供了基础。 这种蛋白可能构成开发疾 1病诊断和 /或治疗药的基础, 因此分离其编码 DNA是非常重要的。 发明的公开  As mentioned above, human phosphatase 9 protein plays an important role in regulating important functions of the body such as cell division and embryo development, and it is believed that a large number of proteins are involved in these regulatory processes, so there has been a need in the art to identify more people involved in these processes Phosphatase 9 protein, especially the amino acid sequence of this protein is identified. Isolation of the new human phosphatase 9 protein encoding gene also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一人磷酸酶 9以及其片段、 类似 物和衍生物。  It is an object of the present invention to provide isolated novel polypeptides-human phosphatase 9 and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。  Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码人磷酸酶 9的多核苷酸的重组载体。 本发明的另一个目的是提供含有编码人磷酸酶 9的多核苷酸的基因工程化宿 主细胞。 Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding human phosphatase 9. Another object of the present invention is to provide a genetically engineered host containing a polynucleotide encoding human phosphatase 9. Primary cells.
本发明的另一个目的是提供生产人磷酸酶 9的方法。  Another object of the present invention is to provide a method for producing human phosphatase 9.
本发明的另一个目的是提供针对本发明的多肽一一人磷酸酶 9的抗体。  Another object of the present invention is to provide an antibody against the polypeptide-human phosphatase 9 of the present invention.
本发明的另一个目的是提供了针对本发明多肽一一人磷酸酶 9的模拟化合 物、 拮抗剂、 激动剂、 抑制剂。  Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors directed to the polypeptide of the present invention-human phosphatase 9.
本发明的另一个目的是提供诊断治疗与人磷酸酶 9异常相关的疾病的方法。 本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 SEQ ID No. 2 氨基酸序列的多肽、 或其保守性变体、 生物活性片段或衍生物。 较佳地, 该多 肽是具有 SEQ ID NO: 2氨基酸序列的多肽。  Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of human phosphatase 9. The present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或 其变体:  The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
(a)编码具有 SEQ ID No. 2氨基酸序列的多肽的多核苷酸;  (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID No. 2;
(b)与多核苷酸(a)互补的多核苷酸;  (b) a polynucleotide complementary to polynucleotide (a);
(0与(a)或(b)的多核苷酸序列具有至少 70%相同性的多核苷酸。  (0) A polynucleotide whose polynucleotide sequence is at least 70% identical to (a) or (b).
更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ ID NO: 1中 More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) having SEQ ID NO: 1
299- 599位的序列; 和(b)具有 SEQ ID NO: 1中 1-1842位的序列。 A sequence of positions 299-599; and (b) a sequence of positions 1-1842 in SEQ ID NO: 1.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种 用该载体遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包 括培养所述宿主细胞和回收表达产物的制备本发明多肽的方法。  The present invention further relates to a vector, particularly an expression vector, containing the polynucleotide of the present invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。  The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制人磷酸酶 9蛋白活性的化 合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方法获得的化合物。  The invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit the activity of human phosphatase 9 protein, which comprises utilizing the polypeptide of the invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与人磷酸酶 9蛋白异常表达相关的疾病或疾病易 感性的方法,包括检测生物样品中所述多肽或其编码多核苷酸序列中的突变,或者 检测生物样品中本发明多肽的量或生物活性。  The invention also relates to a method for detecting a disease or susceptibility to disease associated with abnormal expression of human phosphatase 9 protein in vitro, which comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, or detecting a mutation in a biological sample. The amount or biological activity of a polypeptide of the invention.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮 抗剂或抑制剂以及药学上可接受的载体。  The invention also relates to a pharmaceutical composition comprising a polypeptide of the invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗癌症、 发育性疾 病或免疫性疾病或其它由于人磷酸酶 9表达异常所引起疾病的药物的用途。  The present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention in the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of human phosphatase 9.
本发明的其它方面由于本文的技术的公开,对本领域的技术人员而言是显而易 见的。 本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义: "核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指 基因组或合成的 DNA或 RNA, 它们可以是单链或双链的, 代表有义链或反义链。 类似地, 术语 "氨基酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部 分。 当本发明中的 "氨基酸序列" 涉及一种天然存在的蛋白质分子的氨基酸序 列时, 这种 "多肽" 或 "蛋白质" 不意味着将氨基酸序列限制为与所述蛋白质 分子相关的完整的天然氨基酸。 Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein. The following terms used in this specification and claims have the following meanings unless specifically stated: "Nucleic acid sequence" refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变 的氨基酸序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸 序列中氨基酸或核苷酸的缺失、 插入或替换。 变体可具有 "保守性" 改变, 其 中替换的氨基酸具有与原氨基酸相类似的结构或化学性质, 如用亮氨酸替换异 亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。  A "variant" of a protein or polynucleotide refers to an amino acid sequence having one or more amino acids or nucleotide changes or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence. Variants can have "conservative" changes, in which the amino acid substituted has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
"缺失"是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺 失。  "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存在 的分子相比, 一个或多个氨基酸或核苷酸的增加。 "替换 " 是指由不同的氨基酸或 核苷酸替换一个或多个氨基酸或核苷酸。  "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似 地, 术语 "免疫学活性" 是指天然的、 重组的或合成蛋白质及其片段在合适的动物 或细胞中诱导特定免疫反应以及与特异性抗体结合的能力。  "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunologically active" refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind to specific antibodies in a suitable animal or cell.
"激动剂" 是指当与人磷酸酶 9结合时, 一种可引起该蛋白质改变从而调节 该蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合物或任何其它 可结合人磷酸酶 9的分子。  An "agonist" refers to a molecule that, when combined with human phosphatase 9, causes a change in the protein to regulate the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind human phosphatase 9.
"拮抗剂" 或 "抑制物" 是指当与人磷酸酶 9结合时, 一种可封闭或调节人 磷酸酶 9的生物学活性或免疫学活性的分子。 拮抗剂和抑制物可以包括蛋白质、 核酸、 碳水化合物或任何其它可结合人磷酸酶 9的分子。  An "antagonist" or "inhibitor" refers to a molecule that, when combined with human phosphatase 9, blocks or regulates the biological or immunological activity of human phosphatase 9. Antagonists and inhibitors can include proteins, nucleic acids, carbohydrates or any other molecule that can bind human phosphatase 9.
"调节" 是指人磷酸酶 9的功能发生改变, 包括蛋白质活性的升高或降低、 结合特性的改变及人磷酸酶 9的任何其它生物学性质、 功能或免疫性质的改变。  "Regulation" refers to a change in the function of human phosphatase 9, including an increase or decrease in protein activity, a change in binding characteristics, and any other biological, functional, or immune properties of human phosphatase 9.
"基本上纯"是指基本上不含天然与其相关的其它蛋白、脂类、糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化人磷酸酶 9。 基本上纯的人磷酸 酶 9在非还原性聚丙烯酰胺凝胶上能产生单一的主带。 人磷酸酶 9多肽的纯度可用 氨基酸序列分析。 "互补的" 或 "互补" 是指在允许的盐浓度和温度条件下通过碱基配对的多 核苷酸天然结合。 例如, 序列 "C-T-G- A" 可与互补的序列 "G-A-C- T" 结合。 两个单链分子之间的互补可以是部分的或全部的。 核酸链之间的互补程度对于 核酸链之间杂交的效率及强度有明显影响。 By "substantially pure" is meant substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify human phosphatase 9 using standard protein purification techniques. Substantially pure human phosphatase 9 produces a single main band on a non-reducing polyacrylamide gel. The purity of the human phosphatase 9 polypeptide can be analyzed by amino acid sequence. "Complementary" or "complementary" refers to polynucleotides that naturally bind through base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "CTG-A" can be combined with the complementary sequence "GAC-T". The complementarity between two single-stranded molecules may be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性" 是指互补的程度, 可以是部分同源或完全同源。 "部分同源" 是 指一种部分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这种杂交的抑制可通过在严格性程度降低的条件下进行杂交 (Southern印迹或 Nor thern印迹等) 来检测。 基本上同源的序列或杂交探针可竟争和抑制完全同 源的序列与靶序列在的严格性程度降低的条件下的结合。 这并不意味严格性程 度降低的条件允许非特异性结合, 因为严格性程度降低的条件要求两条序列相 互的结合为特异性或选择性相互作用。  "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Southern blotting or Nor thern blotting, etc.) under conditions of reduced stringency. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of a completely homologous sequence to a target sequence under conditions of reduced stringency. This does not mean that conditions with reduced stringency allow non-specific binding, because conditions with reduced stringency require that the two sequences interact with each other specifically or selectively.
"相同性百分率"是指在两种或多种氨基酸或核酸序列比较中序列相同或相 似的百分率。可用电子方法测定相同性百分率,如通过 MEGALIGN程序(Lasergene sof tware package, DNASTAR, Inc. , Madi son Wi s. ) 。 MEGALIGN程序可根据不 同的方法如 Clus ter法比较两种或多种序列(H igg ins, D. G. 和 P. M. Sharp (1988) Gene 73: 237-244) 0 C lus ter法通过检查所有配对之间的距离将各组序 列排列成簇。 然后将各簇以成对或成组分配。 两个氨基酸序列如序列 A和序列 B 之间的相同性百分率通过下式计算: 序列 A与序列 B之间匹配的残基个数 "Percent identity" refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene sof tware package, DNASTAR, Inc., Madi son Wis.). The MEGALIGN program can compare two or more sequences according to different methods such as the Clus ter method (Higgs, DG and PM Sharp (1988) Gene 73: 237-244). 0 The C lus ter method checks the distance between all pairs. The groups of sequences are arranged into clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula: The number of matching residues between sequence A and sequence B
x l OO 序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数 也可以通过 C lus ter法或用本领域周知的方法如 Jotun Hein测定核酸序列之 间的相同性百分率(He in J. , (1990) Methods in emzumology 183: 625-645)。  xl OO The number of residues in sequence A-the number of spacer residues in sequence A-the number of spacer residues in sequence B can also be determined by the Cluster method or using methods known in the art such as Jotun Hein. (He in J., (1990) Methods in emzumology 183: 625-645).
"相似性" 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或 保守性取代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括 天冬氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷 的头部基团有相似亲水性的氨基酸可包括亮氨酸、 异亮氨酸和缬氨酸; 甘氨酸 和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨酸和苏氨酸; 苯丙氨酸和酪氨酸。  "Similarity" refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义" 是指与特定的 DM或 RNA序列互补的核苷酸序列。 "反义链" 是指与 "有义链" 互补的核酸链。 "衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是 用烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物 学特性的多肽。 "Antisense" refers to a nucleotide sequence that is complementary to a particular DM or RNA sequence. "Antisense strand" refers to a nucleic acid strand that is complementary to the "sense strand". "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. This chemical modification may be the replacement of a hydrogen atom with an alkyl, acyl or amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological properties of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 F (ab') 2及 Fv, 其能特异性 结合人磷酸酶 9的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa, F (ab ') 2 and Fv, which can specifically bind to the epitope of human phosphatase 9.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更 为相似, 但仍保留原始结合活性的抗体。  A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境 (例如, 若是自然产生的就指其天 然环境) 之中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中 就是没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与 之共存的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也 可能这样的多核苷酸或多肽是某一组合物的一部分。 既然载体或组合物不是它 天然环境的成分, 它们仍然是分离的。  The term "isolated" refers to the removal of matter from its original environment (for example, its natural environment if it is naturally occurring). For example, a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living thing, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system. Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not a component of its natural environment, they are still isolated.
如本发明所用, "分离的" 是指物质从其原始环境中分离出来(如果是天然 的物质, 原始环境即是天然环境) 。 如活体细胞内的天然状态下的多聚核苷酸 和多肽是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在 的其他物质中分开, 则为分离纯化的。  As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
如本文所用, "分离的人磷酸酶 9" 是指人磷酸酶 9基本上不含天然与其相 关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯 化技术纯化人磷酸酶 9。 基本上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一 的主带。 人磷酸酶 9多肽的纯度能用氨基酸序列分析。  As used herein, "isolated human phosphatase 9" means that human phosphatase 9 is substantially free of other proteins, lipids, carbohydrates, or other substances naturally associated with it. Those skilled in the art can purify human phosphatase 9 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human phosphatase 9 polypeptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一人磷酸酶 9, 其基本上是由 SEQ ID N0: 2所示 的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选 重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的产物, 或使用重 组技术从原核或真核宿主(例如, 细菌、 酵母、 高等植物、 昆虫和哺乳动物细胞) 中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基化的, 或可以是 非糖基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。  The present invention provides a new polypeptide, human phosphatase 9, which basically consists of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant technology. Depending on the host used in the recombinant production protocol, the polypeptides of the invention may be glycosylated or may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括人磷酸酶 9的片段、 衍生物和类似物。 如本发明所用, 术语 "片段" 、 "衍生物" 和 "类似物" 是指基本上保持本发明的人磷酸酶 9相同 的生物学功能或活性的多肽。 本发明多肽的片段、 衍生物或类似物可以是: ( I ) 这样一种, 其中一个或多个氨基酸残基被保守或非保守氨基酸残基 (优选的是 保守氨基酸残基) 取代, 并且取代的氨基酸可以是也可以不是由遗传密码子编 码的; 或者 ( Π ) 这样一种, 其中一个或多个氨基酸残基上的某个基团被其它 基团取代包含取代基; 或者( Π Ι )这样一种, 其中成熟多肽与另一种化合物(比 如延长多肽半衰期的化合物, 例如聚乙二醇) 融合; 或者 ( IV ) 这样一种, 其 中附加的氨基酸序列融合进成熟多肽而形成的多肽序列 (如前导序列或分泌序 列或用来纯化此多肽的序列或蛋白原序列) 通过本文的阐述, 这样的片段、 衍 生物和类似物被认为在本领域技术人员的知识范围之内。 The invention also includes fragments, derivatives and analogs of human phosphatase 9. As used in the present invention, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially maintains the same biological function or activity of the human phosphatase 9 of the present invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution Amino acids may or may not be coded by the genetic code Code; or (Π) such a type in which a group on one or more amino acid residues is substituted with another group to include a substituent; or (Π Ι) such a type in which a mature polypeptide and another A compound (such as a compound that extends the half-life of a polypeptide, such as polyethylene glycol); or (IV) a polypeptide sequence (such as a leader sequence or a secreted sequence or used for purification) in which an additional amino acid sequence is fused into a mature polypeptide The sequence of this polypeptide or protease sequence) As set forth herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸 (多核苷酸) , 基本由编码具有 SEQ ID NO: 2 氨 基酸序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID N0: 1的 核苷酸序列。 本发明的多核苷酸是从人胎脑组织的 cDNA文库中发现的。 它包含 的多核苷酸序列全长为 1842个碱基, 其开放读框 299-599编码了 86个氨基酸。 根据基因芯片表达谱比较发现, 此多肽与人磷酸酶 79有相似的表达谱, 可推断 出该人磷酸酶 9具有人磷酸酶 79相似的功能。  The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a full-length polynucleotide sequence of 1842 bases and its open reading frame of 299-599 encodes 86 amino acids. According to the comparison of gene chip expression profiles, it was found that this polypeptide has a similar expression profile to human phosphatase 79, and it can be deduced that the human phosphatase 9 has a similar function to human phosphatase 79.
本发明的多核苷酸可以是 DNA形式或是 RNA形式。 DM形式包括 cDNA、 基因 组 DNA或人工合成的 DNA。 DNA可以是单链的或是双链的。 DNA可以是编码链或 非编码链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1所示的编码区序列 相同或者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指 编码具有 SEQ ID NO: 2的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区序列 有差别的核酸序列。  The polynucleotide of the present invention may be in the form of DNA or RNA. DM forms include cDNA, genomic DNA or synthetic DNA. DNA can be single-stranded or double-stranded. DNA can be coding or non-coding. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
编码 SEQ ID N0: 2的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附 加编码序列) 以及非编码序列。  The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加 编码和 /或非编码序列的多核苷酸。  The term "polynucleotide encoding a polypeptide" refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基 酸序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天 然发生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异 体、 缺失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸 的替换形式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质 上改变其编码的多肽的功能。  The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至 少 50%, 优选具有 70%的相同性) 。 本发明特别涉及在严格条件下与本发明所述 多核苷酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子 强度和较高温度下的杂交和洗脱, 如 0.2xSSC, 0.1%SDS, 60°C;或(2)杂交时加用 变性剂, 如 50%(v/v)甲酰胺, 0.1%小牛血清 /0. l%Ficoll, 42°C等; 或(3)仅在 两条序列之间的相同性至少在 95%以上,更好是 97%以上时才发生杂交。并且, 可 杂交的多核苷酸编码的多肽与 SEQ ID NO: 2所示的成熟多肽有相同的生物学功 能和活性。 The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the invention under stringent conditions. In the present invention, "strict conditions" means: (1) at lower ions Intensity and hybridization and elution at higher temperatures, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) adding a denaturant such as 50% (v / v) formamide, 0.1% calf Serum / 0.1% Ficoll, 42 ° C, etc .; or (3) hybridization occurs only when the identity between the two sequences is at least 95% or more, and more preferably 97% or more. In addition, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸 片段"的长度至少含 10个核苷酸,较好是至少 20- 30个核苷酸,更好是至少 50 - 60 个核苷酸,最好是至少 100个核苷酸以上。核酸片段也可用于核酸的扩增技术(如 PCR)以确定和 /或分离编码人磷酸酶 9的多核苷酸。  The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used herein, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 cores Glycylic acid or more. Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding human phosphatase 9.
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 本发明的编码人磷酸酶 9的特异的多核苷酸序列能用多种方法获得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不局限于: 1)用探针与 基因组或 cDNA文库杂交以检出同源的多核苷酸序列, 和 2)表达文库的抗体筛选 以检出具有共同结构特征的克隆的多核苷酸片段。  The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity. The specific polynucleotide sequence encoding the human phosphatase 9 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DNA片段序列也能用下列方法获得: 1)从基因组 DNA分离双链 DNA 序列; 2)化学合成 DNA序列以获得所述多肽的双链 DNA。  The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) isolating the double-stranded DNA sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
上述提到的方法中, 分离基因组 DM最不常用。 DNA序列的直接化学合成是 经常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA的 标准方法是从高表达该基因的供体细胞分离 mRNA并进行逆转录, 形成质粒或噬 菌体 cDNA文库。 提取 mRM的方法已有多种成熟的技术, 试剂盒也可从商业途径 获得(Qiagene) Φ而构建 cDNA文库也是通常的方法(Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989)。 还可得到商业供应的 cDNA文库, 如 Clontech公司的不同 cDNA文库。 当 结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。 Of the methods mentioned above, genomic DM is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. MRM existing method of extracting more mature technology, kits are also available from commercial sources (Qiagene) Φ cDNA library is constructed conventional method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When polymerase reaction technology is used in combination, even very small expression products can be cloned.
可用常规方法从这些 cDNA文库中筛选本发明的基因。这些方法包括(但不限 于): (1)DM- DNA或 DNA-RNA杂交; (2)标志基因功能的出现或丧失; (3)测定人 磷酸酶 9的转录本的水平; (4)通过免疫学技术或测定生物学活性, 来检测基因 表达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。  The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (1) DM-DNA or DNA-RNA hybridization; (2) the presence or loss of marker gene function; (3) measuring the level of human phosphatase 9 transcripts; (4) passing Immunological techniques or assays for biological activity to detect gene-expressed protein products. The above methods can be used singly or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同 源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50个核苷 酸, 最好是至少 100个核苷酸。 此外, 探针的长度通常在 2000个核苷酸之内, 较佳的为 1000个核苷酸之内。 此处所用的探针通常是在本发明的基因序列信息 的基础上化学合成的 DNA序列。 本发明的基因本身或者片段当然可以用作探针。 DNA探针的标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。 In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides. The probes used here are usually the gene sequence information of the present invention Based on chemically synthesized DNA sequences. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测人磷酸酵 9基因表达的蛋白产物可用免疫学技术如 Western印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA)等。  In the (4) method, immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA) can be used to detect the protein product expressed by the human phosphatase 9 gene.
应用 PCR技术扩增 DNA/RNA的方法(Saiki, et al. Science  Amplification of DNA / RNA by PCR (Saiki, et al. Science
1985; 230: 1350-1354)被优选用于获得本发明的基因。 特别是很难从文库中得到 全长的 cDNA时, 可优选使用 RACE法(RACE- cDNA末端快速扩增法), 用于 PCR 的引物可根据本文所公开的本发明的多核苷酸序列信息适当地选择,并可用常规 方法合成。 可用常规方法如通过凝胶电泳分离和纯化扩增的 DNA/RNA片段。  1985; 230: 1350-1354) are preferred for obtaining the genes of the invention. In particular, when it is difficult to obtain full-length cDNA from a library, the RACE method (RACE-rapid cDNA end rapid amplification method) can be preferably used, and the primers used for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Selected and synthesized by conventional methods. The amplified DNA / RNA fragments can be isolated and purified by conventional methods such as by gel electrophoresis.
如上所述得到的本发明的基因,或者各种 DNA片段等的多核苷酸序列可用常 规方法如双脱氧链终止法(Sanger et al. PNAS, 1977, 74: 5463- 5467)测定。 这类多核苷酸序列测定也可用商业测序试剂盒等。为了获得全长的 cDNA序列, 测 序需反复进行。 有时需要测定多个克隆的 cDNA序列, 才能拼接成全长的 cDNA序 歹' j。  The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, the sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体,以及用本发明的载体或直接用 人磷酸酶 9编码序列经基因工程产生的宿主细胞, 以及经重组技术产生本发明所 述多肽的方法。  The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell genetically engineered using the vector of the present invention or directly using a human phosphatase 9 coding sequence, and a method for producing the polypeptide of the present invention by recombinant technology.
本发明中, 编码人磷酸酶 9的多核苷酸序列可插入到载体中, 以构成含有本 发明所述多核苷酸的重组载体。 术语 "载体"指本领域熟知的细菌质粒、 噬菌体、 酵母质粒、植物细胞病毒、哺乳动物细胞病毒如腺病毒、逆转录病毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基于 T7启动子的表达载 体(Rosenberg, et al. Gene, 1987, 56: 125); 在哺乳动物细胞中表达的 pMSXND 表达载体(Lee and Nathans, J Bio Chem. 263: 3521, 1988)和在昆虫细胞中表达 的来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和稳定, 任何质粒和载 体都可以用于构建重组表达载体。表达载体的一个重要特征是通常含有复制起始 点、 启动子、 标记基因和翻译调控元件。  In the present invention, a polynucleotide sequence encoding human phosphatase 9 can be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors expressed in bacteria (Rosenberg, et al. Gene, 1987, 56: 125); pMSXND expression vectors expressed in mammalian cells ( Lee and Nathans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in the host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码人磷酸酶 9的 DNA序列和合 适的转录 /翻译调控元件的表达载体。 这些方法包括体外重组 DNA技术、 DM合 成技术、 体内重组技术等(Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989)。 所述的醒序歹1 J 可有效连接到表达载体中的适当启动子上, 以指导 mRNA合成。 这些启动子的代 表性例子有: 大肠杆菌的 lac或 trp启动子; λ噬菌体的 PL启动子; 真核启动 子包括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启动子、 反转录病毒的 LTRs和其它一些已知的可控制基因在原核细胞或真核细胞或其病 毒中表达的启动子。表达载体还包括翻译起始用的核糖体结合位点和转录终止子 等。 在载体中插入增强子序列将会使其在高等真核细胞中的转录得到增强。 增强 子是 DNA表达的顺式作用因子, 通常大约有 10到 300个碱基对, 作用于启动子 以增强基因的转录。可举的例子包括在复制起始点晚期一侧的 100到 270个碱基 对的 SV40增强子、 在复制起始点晚期一侧的多瘤增强子以及腺病毒增强子等。 Methods known to those skilled in the art can be used to construct expression vectors containing a DNA sequence encoding human phosphatase 9 and appropriate transcriptional / translational regulatory elements. These methods include in vitro recombinant DNA technology, DM synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989). The sequence of wake bad 1 J may be linked to an appropriate promoter in the expression vector, to direct mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoter Promoters include the CMV immediate early promoter, HSV thymidine kinase promoter, early and late SV40 promoters, retroviral LTRs, and other known controllable genes expressed in prokaryotic or eukaryotic cells or their viruses. Promoter. The expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenovirus enhancers.
此外,表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择转 化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗性以 及绿色荧光蛋白(GFP) , 或用于大肠杆菌的四环素或氨苄青霉素抗性等。  In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件 (如启动 子、 增强子等) 和选择性标记基因。  Those of ordinary skill in the art will know how to select appropriate vector / transcription control elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中,编码人磷酸酶 9的多核苷酸或含有该多核苷酸的重组载体可转化 或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基因工程化宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细胞, 如酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链霉菌属; 细 菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细胞; 昆虫细胞如果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowes黑素瘤细胞等。  In the present invention, a polynucleotide encoding human phosphatase 9 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: Escherichia coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf 9; animal cells such as CH0, COS or Bowes melanoma cells.
用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可用 本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能吸收 DNA的感受态细胞可在指数生长期后收获, 用 CaC l 处理, 所用的步骤在本领 域众所周知。 可供选择的是用 MgC l2。 如果需要, 转化也可用电穿孔的方法进行。 当宿主是真核生物, 可选用如下的 DM转染方法: 磷酸钙共沉淀法, 或者常规机 械方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote such as E. coli, competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with CaCl. The steps used are well known in the art. The alternative is to use MgC l 2 . If necessary, transformation can also be performed by electroporation. When the host is a eukaryote, the following DM transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
通过常规的重组 DNA技术,利用本发明的多核苷酸序列可用来表达或生产重 组的人磷酸酶 9 (Sc i ence , 1984 ; 224 : 1431)。 一般来说有以下步骤:  The polynucleotide sequence of the present invention can be used to express or produce recombinant human phosphatase 9 by conventional recombinant DNA technology (Scence, 1984; 224: 1431). Generally there are the following steps:
(1) .用本发明的编码人 人磷酸酶 9的多核苷酸(或变异体), 或用含有该多 核苷酸的重组表达载体转化或转导合适的宿主细胞;  (1) using the polynucleotide (or variant) encoding human human phosphatase 9 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;
(2) .在合适的培养基中培养宿主细胞;  (2) culturing host cells in a suitable medium;
( 3) .从培养基或细胞中分离、 纯化蛋白质。  (3) Isolate and purify protein from culture medium or cells.
在步骤(2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种常 规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当的细 胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将细胞再 培养一段时间。 In step (2), depending on the host cell used, the medium used in the culture may be selected from various conventional mediums. Culture is performed under conditions suitable for host cell growth. When the host cell grows to After cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在歩骤 ( 3) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到 细胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分离 和纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但并不 限于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波 处理、 超离心、 分子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高效液相层 析(HPLC)和其它各种液相层析技术及这些方法的结合。 附图的简要说明  In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If desired, recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods. Brief description of the drawings
下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书所 界定的本发明范围。  The following drawings are used to illustrate specific embodiments of the invention, but not to limit the scope of the invention as defined by the claims.
图 1是本发明人磷酸酶 9和人磷酸酶 79的基因芯片表达谱比较图。 上图是人 磷酸酶 9的表达谱折方图, 下图是人磷酸酶 79的表达谱折方图。 其中, 1表示胎 肾, 2表示胎大肠, 3表示胎小肠, 4表示胎肌, 5表示胎脑, 6表示胎膀胱, 7表 示未饥饿 L02, 8表示 L02+, lhr, As3+, 9表示 ECV304 PMA- , 10表示 ECV304 PMA+, 11表示胎肝, 12表示正常肝, 13表示甲状腺, 14表示皮肤, 15表示胎肺, 16表 示肺, 17表示肺癌, 18表示胎脾, 19表示脾脏, 20表示前列腺, 21表示胎心, 22表示心脏, 23表示肌肉, 24表示睾丸, 25表示胎胸腺, 26表示胸腺。 FIG. 1 is a comparison diagram of gene chip expression profiles of human phosphatase 9 and human phosphatase 79 of the present invention. The upper graph is a graph of the expression profile of human phosphatase 9 and the lower graph is the graph of the expression profile of human phosphatase 79. Among them, 1 indicates fetal kidney, 2 indicates fetal large intestine, 3 indicates fetal small intestine, 4 indicates fetal muscle, 5 indicates fetal brain, 6 indicates fetal bladder, 7 indicates unstarved L02, 8 indicates L02 +, lhr, As 3+ , and 9 indicates ECV304 PMA-, 10 means ECV304 PMA +, 11 means fetal liver, 12 means normal liver, 13 means thyroid, 14 means skin, 15 means fetal lung, 16 means lung, 17 means lung cancer, 18 means fetal spleen, 19 means spleen, 20 Indicates prostate, 21 indicates fetal heart, 22 indicates heart, 23 indicates muscle, 24 indicates testis, 25 indicates fetal thymus, and 26 indicates thymus.
图 2为分离的人磷酸酶 9的聚丙烯酰胺凝胶电泳图 (SDS-PAGE) 。 9kDa为 蛋白质的分子量。 箭头所指为分离出的蛋白条带。 实现本发明的最佳方式  Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of isolated human phosphatase 9. 9kDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The best way to implement the invention
下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明 本发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通常按照常规条件如 Sambrook等人, 分子克隆: 实验室手册(New York: Cold Spring Harbor Laboratory Press, 1989)中所述的条件, 或按照制造厂商所建 议的条件。  The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are usually performed according to conventional conditions, such as Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer Suggested conditions.
实施例 1: 人磷酸酶 9的克隆  Example 1: Cloning of human phosphatase 9
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik mRNA Isolation Kit Human fetal brain total RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Using Quik mRNA Isolation Kit
(Qiegene 公司产品)从总 RNA中分离 poly (A) mRNA。 2ug poly (A) mRNA经逆转录 形成 cDNA。用 Smart cDNA克隆试剂盒(购自 Clontech )将。0^片段定向插入到 pBSK (+) 载体(Clontech公司产品)的多克隆位点上, 转化 DH5 α, 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequencing ki t (Perkin-Elmer公司产品) 和 ABI 377 自动测序仪 (Perkin- Elmer公司)测定所有克隆的 5'和 3'末端的序列。 将测定的 cDNA 序列与已有的公共 DNA序列数据库 (Genebank)进行比较, 结果发现其中一个克隆 0217d07的 cDNA序列为新的 DNA。 通过合成一系列引物对该克隆所含的插入 cDNA片段 进行双向测定。 结果表明, 0217d07克隆所含的全长 cDNA为 1842bp (如 Seq ID NO: 1 所示) , 从第 299bp至 599bp有一个 300bp的开放阅读框架 ( 0RF ) , 编码一个新的蛋 白质 (如 Seq ID NO: 2所示) 。 我们将此克隆命名为 pBS-0217d07, 编码的蛋白质命 名为人磷酸酶 9。 实施例 2: 用 RT-PCR方法克隆编码人磷酸酶 9的基因 (Qiegene) Isolate poly (A) mRNA from total RNA. 2ug poly (A) mRNA is reverse transcribed to form cDNA. Use Smart cDNA Cloning Kit (purchased from Clontech). 0 ^ fragment oriented insertion into pBSK (+) At the multiple cloning site of the vector (Clontech), DH5α was transformed, and the bacteria formed a cDNA library. Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the sequences at the 5 'and 3' ends of all clones. The determined cDNA sequence was compared with the existing public DNA sequence database (Genebank), and it was found that the cDNA sequence of one of the clones 0217d07 was new DNA. A series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions. The results show that the full-length cDNA contained in the 0217d07 clone is 1842bp (as shown in Seq ID NO: 1), and there is a 300bp open reading frame (0RF) from 299bp to 599bp, which encodes a new protein (such as Seq ID NO : Shown in 2). We named this clone pBS-0217d07 and the encoded protein was named human phosphatase 9. Example 2: Cloning of a gene encoding human phosphatase 9 by RT-PCR
用胎脑细胞总 RNA为模板,以 oligo- dT为引物进行逆转录反应合成 cDNA,用 Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增:  CDNA was synthesized using fetal brain total RNA as a template and oligo-dT as a primer for reverse transcription reaction. After purification using Qiagene's kit, the following primers were used for PCR amplification:
Primerl: 5'- GGGGAGTAGGGGTGTGCGGCTGGC-3' (SEQ ID NO: 3)  Primerl: 5'- GGGGAGTAGGGGTGTGCGGCTGGC-3 '(SEQ ID NO: 3)
Primer2: 5'- AGGAAAACAATCTTAATATTTTAT-3' (SEQ ID NO: 4)  Primer2: 5'- AGGAAAACAATCTTAATATTTTAT-3 '(SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列;  Primerl is a forward sequence starting at lbp of the 5th end of SEQ ID NO: 1;
Prime 为 SEQ ID NO: 1的中的 3,端反向序列。  Prime is the 3rd, reverse sequence of SEQ ID NO: 1.
扩增反应的条件: 在 50μ 1的反应体积中含有 50mmol/L KC1, 10mmol/L  Amplification conditions: 50 mmol / L KC1, 10 mmol / L in a 50 μl reaction volume
Tris-Cl, (pH8.5) , 1.5ramol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA 聚合酶 (Clontech公司产品)。 在 PE9600型 DNA热循环仪 (Perkin- Elmer公司)上按下 列条件反应 25个周期: 94°C 30sec; 55°C 30sec; 72°C 2min。 在 RT- PCR时同时设 β -actin为阳性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克隆试剂盒连接到 pCR载体上(Invitrogen公司产品) 。 DNA序列分析结果表明 PCR产物的 DNA序列与 SEQ ID NO: 1所示的 1- 1842bp完全相同。 实施例 3: Northern 印迹法分析人磷酸酶 9基因的表达: Tris-Cl, (pH 8.5), 1.5ramol / L MgCl 2 , 200 μmol / L dNTP, lOpmol primer, 1U Taq DNA polymerase (Clontech). The reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) under the following conditions for 25 cycles: 94 ° C 30sec; 55 ° C 30sec; 72 ° C 2min. During RT-PCR, β-actin was set as a positive control and template blank was set as a negative control. The amplified product was purified using a QIAGEN kit and ligated to a pCR vector using a TA cloning kit (Invitrogen). The DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as that of 1 to 1842bp shown in SEQ ID NO: 1. Example 3: Northern blot analysis of human phosphatase 9 gene expression:
用一步法提取总 RNA [Anal. Biochem 1987, 162, 156-159] 0 该法包括酸性硫氰 酸胍苯酚-氯仿抽提。 即用 4M异硫氰酸胍- 25mM柠檬酸钠, 0.2M乙酸钠 ( pH4.0 )对 组织进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇 (49: 1) , 混合后离 心。 吸出水相层, 加入异丙醇 (0.8体积) 并将混合物离心得到 RNA沉淀。 将得到的 RNA沉淀用 70%乙醇洗涤, 干燥并溶于水中。 用 20 gRNA, 在含 20mM 3- ( N-吗啉代) 丙磺酸 (pH7.0) -5raM乙酸钠 -ImM EDTA-2.2M甲醛的 1.2%琼脂糖凝胶上进行电泳。 然后转移至硝酸纤维素膜上。用 cc- 32P dATP通过随机引物法制备 32P-标记的 DNA探针。 所用的 DNA探针为图 1所示的 PCR扩增的人磷酸酶 9编码区序列(299bp至 599bp)。 将 32P-标记的探针 (约 2 x l06cpm/ml ) 与转移了 RNA的硝酸纤维素膜在一溶液中于 42°C 杂交过夜, 该溶液包含 50%甲酰胺 - 25mM KH2P04 ( pH7.4 ) - 5 χ SSC- 5 χ Denhardt's溶 液和 200 μ§/πι1鲑精 DNA。 杂交之后, 将滤膜在 1 χ SSC- 0.1%SDS中于 55°C洗 30min。 然 后, 用 Phosphor Imager进行分析和定量。 实施例 4: 重组人磷酸酶 9的体外表达、 分离和纯化 Total RNA extraction in one step [Anal. Biochem 1987, 162, 156-159] 0 This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidinium isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1) are added. ), Mix and centrifuge. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70 % ethanol, dried and dissolved in water. Using 20 gRNA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0) -5raM sodium acetate-ImM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. Preparation cc- 32 P dATP with 32 P- DNA probe labeled by the random primer method. The DNA probe used was the PCR amplified human phosphatase 9 coding region sequence (299bp to 599bp) shown in FIG. The 32P- labeled probes (about 2 x l0 6 cpm / ml) and RNA was transferred to a nitrocellulose membrane overnight at 42 ° C in a hybridization solution, the solution comprising 50% formamide - 25mM KH 2 P0 4 (pH 7.4)-5 x SSC- 5 x Denhardt's solution and 200 μ § / πι salmon sperm DNA. After hybridization, the filter was washed in 1 x SSC-0.1% SDS at 55 ° C for 30 min. Then, Phosphor Imager was used for analysis and quantification. Example 4: In vitro expression, isolation and purification of recombinant human phosphatase 9
根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序列 如下:  Based on the sequence of the coding region shown in SEQ ID NO: 1 and Figure 1, a pair of specific amplification primers were designed. The sequences are as follows:
Primer3: 5'-CATGCTAGCATGGGTAGAAAAGATGCTGCTACT-3' ( Seq ID No: 5 ) Primer4: 5,- CATGGATCCCTAATCTTCATCTTGGTCCAGATC- 3, (Seq ID No: 6 ) 此两段引物的 5'端分别含有 Nhel和 BamHI酶切位点,其后分别为目的基因 5'端和 3'端的编码序列, Nhel和 BamHI酶切位点相应于表达载体质粒 pET-28b(+) (Novagen 公司产品, Cat. No.69865.3)上的选择性内切酶位点。 以含有全长目的基因的 pBS- 0217d07质粒为模板, 进行 PCR反应。 PCR反应条件为: 总体积 50 μ ΐ中含 pBS-0217d07质粒 10pg、 引物 Primer- 3和 Primer- 4分别为 10pmol、 Advantage polymerase Mix (Clontech公司产品) 1 μ 1。 循环参数: 94°C 20s, 60°C 30s, 68°C 2 min,共 25个循环。 用 Nhel和 BamHI分别对扩增产物和质粒 pET-28 (+)进行双酶切,分 别回收大片段,并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5 CX,在 含卡那霉素 (终浓度 30 μ g/ml ) 的 LB平板培养过夜后, 用菌落 PCR方法筛选阳性克 隆, 并进行测序。 挑选序列正确的阳性克隆(pET-0217d07)用氯化钙法将重组质 粒转化大肠杆菌 BL21(DE3)plySs(Novagen公司产品)。 在含卡那霉素 (终浓度 30 μ g/ml ) 的 LB液体培养基中, 宿主菌 BL21 ( PET-0217d07 )在 37。C培养至对数生长期, 加入 IPTG至终浓度 lmmol/L, 继续培养 5小时。 离心收集菌体, 经超声波破菌,离心 收集上清, 用能与 6个组氨酸 (6His- Tag) 结合的亲和层析柱 His. Bind Quick Cartridge (Novagen公司产品)进行层析, 得到了纯化的目的蛋白人磷酸酶 9。 经 SDS- PAGE电泳, 在 9kDa处得到一单一的条带 (图 2) 。 将该条带转移至 PVDF膜上用 Edams水解法进行 N-端氨基酸序列分析, 结果 N-端 15个氨基酸与 SEQ ID NO: 2所示的 N-端 15个氨基酸残基完全相同。 实施例 5 抗人磷酸酶 9抗体的产生 用多肽合成仪(PE公司产品)合成下述人磷酸酶 9特异性的多肽: NH2-Met-G ly-Arg-Lys-Asp-A la-A la-Thr-I le-Lys-Leu-Pro-Va l-Asp-G ln-C 00H (SEQ ID Ν0: 7) Φ 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参见: Avrameas, et a l. Immunochemi s try, 1969; 6: 43。 用 4mg上述血蓝蛋 白多肽复合物加上完全弗氏佐剂免疫家免, 15天后再用血蓝蛋白多肽复合物加 不完全弗氏佐剂加强免疫一次。 采用经 15 g/ml牛血清白蛋白多肽复合物包被 的滴定板做 ELISA测定兔血清中抗体的滴度。 用蛋白 A-Sepharose从抗体阳性的 家兔血清中分离总 IgG。 将多肽结合于溴化氰活化的 Sepharose4B柱上, 用亲和 层析法从总 IgG中分离抗多肽抗体。 免疫沉淀法证明纯化的抗体可特异性地与人 磷酸酶 9结合。 实施例 6: 本发明的多核苷酸片段用作杂交探针的应用 Primer3: 5'-CATGCTAGCATGGGTAGAAAAGATGCTGCTACT-3 '(Seq ID No: 5) Primer4: 5,-CATGGATCCCTAATCTTCATCTTGGTCCAGATC- 3, (Seq ID No: 6) The 5' ends of these two primers contain Nhel and BamHI restriction sites, respectively. The coding sequences of the 5 'and 3' ends of the gene of interest are followed, respectively. The Nhel and BamHI restriction sites correspond to the selectivity within the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). Digestion site. The PCR reaction was performed using the pBS-0217d07 plasmid containing the full-length target gene as a template. The PCR reaction conditions were as follows: a total volume of 50 μΐ containing 10 pg of pBS-0217d07 plasmid, primers Primer-3 and Primer-4 of 10 pmol, and Advantage polymerase Mix (Clontech) 1 μ 1 respectively. Cycle parameters: 94 ° C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Nhel and BamHI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into E. coli DH5 CX using the calcium chloride method. After being cultured overnight on LB plates containing kanamycin (final concentration 30 μg / ml), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0217d07) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method. In containing kanamycin (final concentration of 30 μ g / ml) of LB liquid medium, host strain BL21 (P ET-0217d07) at 37. C. Cultivate to logarithmic growth phase, add IPTG to a final concentration of 1 mmol / L, and continue incubating for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by ultrasonication. The supernatant was collected by centrifugation. The affinity chromatography column His. Bind Quick Cartridge (Novagen) was used to obtain 6 histidines (6His-Tag). Purified the target protein human phosphatase 9. After SDS-PAGE electrophoresis, a single band was obtained at 9 kDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by the Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2. Example 5 Production of anti-human phosphatase 9 antibodies The following peptides specific for human phosphatase 9 were synthesized using a peptide synthesizer (product of PE): NH2-Met-G ly-Arg-Lys-Asp-A la-A la-Thr-I le-Lys-Leu-Pro -Va l-Asp-G ln-C 00H (SEQ ID NO: 7) Φ This polypeptide is coupled to hemocyanin and bovine serum albumin to form a complex. For methods, see: Avrameas, et al. Immunochemi s try, 1969; 6: 43. Immunize the patient with 4 mg of the hemocyanin polypeptide complex and complete Freund's adjuvant. After 15 days, use the hemocyanin polypeptide complex and incomplete Freund's adjuvant to boost immunity once. A titer plate coated with a 15 g / ml bovine serum albumin peptide complex was used as an ELISA to determine antibody titers in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sepharose4B column, and anti-peptide antibodies were separated from the total IgG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to human phosphatase 9. Example 6: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的 用途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA文库杂交 以鉴定其是否含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可 用该探针检测本发明的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理 组织细胞中的表达是否异常。  Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways. For example, the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissue or pathology. Whether the expression in tissue cells is abnormal.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1 中挑选出合适的寡核苷 酸片段用作杂交探针,并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核苷 酸序列或其同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern 印迹 法、 Northern 印迹法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤膜 上后使用基本相同的步骤杂交。这些相同的步骤是: 固定了样品的滤膜首先用不含 探针的杂交缓冲液进行预杂交,以使滤膜上样品的非特异性的结合部位被载体和合 成的多聚物所饱和。 然后预杂交液被含有标记探针的杂交缓冲液替换, 并保温使探 针与靶核酸杂交。 杂交步骤之后, 未杂交上的探针被一系列洗膜步骤除掉。 本实施 例利用较高强度的洗膜条件(如较低盐浓度和较高的温度), 以使杂交背景降低且 只保留特异性强的信号。本实施例选用的探针包括两类: 第一类探针是完全与本发 明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段; 第二类探针是部分与本 发明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段。 本实施例选用斑点印 迹法将样品固定在滤膜上, 在较高强度的的洗膜条件下, 第一类探针与样品的杂交 特异性最强而得以保留。  The purpose of this example is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method. Acid sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They all use the same steps to hybridize the fixed polynucleotide sample to the filter. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer to saturate the non-specific binding site of the sample on the filter with the carrier and the synthesized polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing the labeled probe and incubated to hybridize the probe to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. This embodiment uses higher intensity membrane washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the spot imprint method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
一、 探针的选用 从本发明的多核苷酸 SEQ ID NO: 1中选择寡核苷酸片段用作杂交探针, 应遵 循以下原则和需要考虑的几个方面: First, the selection of the probe The selection of oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention as hybridization probes should follow the following principles and several aspects to be considered:
1, 探针大小优选范围为 18-50个核苷酸; 1. The preferred range of probe size is 18-50 nucleotides;
2, GC含量为 30%- 70%, 超过则非特异性杂交增加; 2, GC content is 30% -70%, non-specific hybridization increases when it exceeds;
3, 探针内部应无互补区域; 3. There should be no complementary regions inside the probe;
4, 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析, 包括将该初 选探针分别与其来源序列区域 (即 SEQ ID NO: 1) 和其它已知的基因组序列及 其互补区进行同源性比较, 若与非靶分子区域的同源性大于 85%或者有超过 15 个连续碱基完全相同, 则该初选探针一般就不应该使用;  4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
5, 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针:  After completing the above analysis, select and synthesize the following two probes:
探针 l (pr0bel), 属于第一类探针, 与 SEQ ID NO: 1的基因片段完全同 源或互补 (41Nt ): Probe 1 (pr 0 bel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
5-TGGGTAGAAAAGATGCTGCTACTATAAAACTTCCTGTTGAT-3' ( SEQ ID NO: 8 )  5-TGGGTAGAAAAGATGCTGCTACTATAAAACTTCCTGTTGAT-3 '(SEQ ID NO: 8)
探针 2 (probe2), 属于第二类探针, 相当于 SEQ ID NO: 1的基因片段或 其互补片段的替换突变序列 (41Nt):  Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
5-TGGGTAGAAAAGATGCTGCTCCTATAAAACTTCCTGTTGAT-3' ( SEQ ID NO: 9 )  5-TGGGTAGAAAAGATGCTGCTCCTATAAAACTTCCTGTTGAT-3 '(SEQ ID NO: 9)
DNA PROBES G. H. Keller;M. M. Manak; Stockton Press, 1989 (USA)以及更常用的分 子克隆实验手册书籍如《分子克隆实验指南》( 1998年第二版) 〖美]萨姆布鲁克等 著, 科学出版社。 DNA PROBES GH Keller; MM Manak; Stockton Press, 1989 (USA) and more commonly used molecular cloning experiment manuals such as "Molecular Cloning Experiment Guide" (Second Edition 1998) [US] Sambrook et al., Science Press .
样品制备:  Sample Preparation:
1, 从新鲜或冰冻组织中提取 DM 1. Extract DM from fresh or frozen tissue
歩骤: 1 )将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液 (PBS) 的平皿中。 用剪刀或手术刀将组织切成小块。 搡作中应保持组织湿润。 2) 以 lOOOg离心切碎组织 10分钟。 3 )用冷匀浆缓冲液 ( 0.25mol/L蔗糖; 25mmol/L Tris-HCl, pH7.5; 25mraol/LnaCl; 25mmol/L MgCl2 ) 悬浮沉淀 (大约 lOml/g )。 4 ) 在 4eC用电动匀浆器以全速匀浆组织悬液, 直至组织被完全破碎。 5) lOOOg 离心 10分钟。 6 )用重悬细胞沉淀 (每 0. lg最初组织样品加 1- 5ml ), 再以 lOOOg离心 10分钟。 7)用裂解缓冲液重悬沉淀 (每 O. lg最初组织样品加 lml ), 然后接以下 的苯酚抽提法。 Steps: 1) Place fresh or freshly thawed normal liver tissue in a plate immersed in ice and filled with phosphate buffered saline (PBS). Cut the tissue into small pieces with scissors or a scalpel. Tissue should be kept moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Suspend the precipitate (about 10 ml / g) with a cold homogenization buffer (0.25 mol / L sucrose; 25 mmol / L Tris-HCl, pH 7.5; 25 mraol / LnaCl; 25 mmol / L MgCl 2 ). 4) At 4 e C, homogenize the tissue suspension at full speed with an electric homogenizer until the tissue is completely broken. 5) Centrifuge at 1000g for 10 minutes. 6) Resuspend the cell pellet (add 1 to 5 ml per 0.1 g of the original tissue sample), and centrifuge at 1,000 g for 10 minutes. 7) Resuspend the pellet with lysis buffer (1 ml per 0.1 g of the initial tissue sample), and then follow the phenol extraction method below.
2, DNA的苯酚抽提法 歩骤: 1 )用 1- 10ml冷 PBS洗细胞, 1000g离心 10分钟。 2)用冷细胞裂解液 重悬浮沉淀的细胞(l x 108细胞 /ml )最少应用 lOOul裂解缓冲液。 3)加 SDS至终 浓度为 1%, 如果在重悬细胞之前将 SDS直接加入到细胞沉淀中, 细胞可能会形成 大的团块而难以破碎, 并降低的总产率。 这一点在抽提 >107细胞时特别严重。 4) 加蛋白酶 K至终浓度 200ug/ml。 5) 5(TC保温反应 1小时或在 37°C轻轻振摇过夜。 6)用等体积苯酚: 氯仿: 异戊醇 ( 25: 24: 1 ) 抽提, 在小离心机管中离心 10分 钟。 两相应清楚分离, 否则重新进行离心。 7)将水相转移至新管。 8)用等体积氯 仿: 异戊醇 (24: 1 )抽提, 离心 10分钟。 9)将含 DNA的水相转移至新管。 然后 进行 DNA的纯化和乙醇沉淀。 2, phenol extraction method for DNA Steps: 1) Wash the cells with 1-10 ml of cold PBS and centrifuge at 1000g for 10 minutes. 2) with cold cell lysate pelleted cells were resuspended (lx 10 8 cells / ml) Minimum application lOOul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is directly added to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) 5 (TC incubation reaction for 1 hour or shaking gently at 37 ° C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1), and centrifuge in a small centrifuge tube for 10 minute. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the DNA-containing aqueous phase to a new tube. The DNA was then purified and ethanol precipitated.
3, DNA的纯化和乙醇沉淀 3, DNA purification and ethanol precipitation
歩骤: 1 )将 1/10体积 2mol/L醋酸钠和 1倍体积冷 100%乙醇加到 DNA溶液中, 混匀。 在 -20°C放置 1小时或至过夜。 2) 离心 10分钟。 3)小心吸出或倒出乙醇。 4 )用 70%冷乙醇 500ul洗涤沉淀, 离心 5分钟。 5 )小心吸出或倒出乙醇。用 500ul 冷乙醇洗涤沉淀, 离心 5分钟。 6) 小心吸出或倒出乙醇, 然后在吸水纸上倒置使 残佘乙醇流尽。 空气干燥 10-15分钟, 以使表面乙醇挥发。 注意不要使沉淀完全干 燥, 否则较难重新溶解。 7) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或用滴 管吹吸, 同时逐渐增加 TE, 混合至 DNA充分溶解, 每 1-5 x lO6细胞所提取的大约 加 lul。 Steps: 1) Add 1/10 volume of 2mol / L sodium acetate and 1 volume of cold 100% ethanol to the DNA solution and mix well. Leave at -20 ° C for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Wash the pellet with 500ul of cold ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain off the residual ethanol. Air-dry for 10-15 minutes to evaporate the surface ethanol. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Vortex at low speed or pipette with suction while gradually increasing TE, mix until the DNA is fully lysed, add approximately 1 ul per 1-5 x lO 6 cells extracted.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步驟。  The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 )将 RNA酶 A加到 DNA溶液中, 终浓度为 100ug/ml, 37°C保温 30分钟。 9 )加入 SDS和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37°C保温 30分钟。 10) 用等体 积的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提反应液, 离心 10分钟。 11)小心移出 水相, 用等体积的氯仿: 异戊醇(24: 1)重新抽提, 离心 10分钟。 12)小心移出 水相, 加 1/10体积 2mol/L醋酸钠和 2.5体积冷乙醇, 混匀置 - 20°C 1小时。 13) 用 70%乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3- 6步骤。 14) 测定 A26。和 A28。以检测 DNA的纯度及产率。 15)分装后存放于 -20° (;。 8) Add RNase A to the DNA solution to a final concentration of 100 ug / ml, and incubate at 37 ° C for 30 minutes. 9) Add SDS and proteinase K, the final concentrations are 0.5% and 100ug / ml, respectively. Incubate at 37 ° C for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase and re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 1/10 volume of 2mol / L sodium acetate and 2.5 volume of cold ethanol, mix and set at -20 ° C for 1 hour. 13) Wash the pellet with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Measure A 26 . And A 28 . To detect the purity and yield of DNA. 15) Store at -20 ° (; after packing).
样膜的制备: Preparation of sample film:
1 )取 4x 2张适当大小的硝酸纤维素膜(NC膜), 用铅笔在其上轻轻标出点样位 置及样号, 每一探针需两张 NC膜, 以便在后面的实验步骤中分别用高强度条件和 强度条件洗膜 。 1) Take 4x 2 pieces of nitrocellulose membrane (NC membrane) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are needed for each probe in order to follow the experimental steps. The film was washed with high-strength conditions and strength conditions, respectively.
2) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。  2) Pipette and control 15 microliters each, spot on the sample film, and dry at room temperature.
3 ) 置于浸润有 0. Imol/LNaOH, 1.5mol/LNaCl的滤纸上 5分钟 (两次 ), 晾干置 于浸润有 0.5mol/L Tris-HCl ( pH7.0 ), 3mol/LNaCl的滤纸上 5分钟 (两次), 晾 干。 3) Place on filter paper impregnated with 0.1 mol / L NaOH, 1.5 mol / L NaCl for 5 minutes (twice), and dry The filter paper was impregnated with 0.5 mol / L Tris-HCl (pH 7.0) and 3 mol / L NaCl for 5 minutes (twice) and air-dried.
4) 夹于干净滤纸中, 以铝箔包好, 60-80°C真空干燥 2小时。  4) Clamped in clean filter paper, wrapped in aluminum foil, and dried under vacuum at 60-80 ° C for 2 hours.
探针的标记  Labeling of probes
1 ) 3 μ IProbe ( 0. lOD/10 μ 1 ),加入 2 μ IKinase缓冲液, 8-10 uCi γ- 32P- dATP+2U Kinase, 以补加至终体积 20 μ 1。 1) 3 μ IProbe (0.1 OD / 10 μ 1), add 2 μ IKinase buffer, 8-10 uCi γ- 32 P- dATP + 2U Kinase, to make up to a final volume of 20 μ 1.
2 ) 37 °C 保温 2小时。  2) Incubate at 37 ° C for 2 hours.
3) 加 1/5体积的溴酚蓝指示剂 (BPB)。  3) Add 1/5 volume of Bromophenol Blue Indicator (BPB).
4 ) 过 Sephadex G-50柱。  4) Pass through a Sephadex G-50 column.
5 ) 至有 Probe洗出前开始收集第一峰(可用 Monitor监测)。  5) Collect the first peak before the Probe is washed out (can be monitored by Monitor).
6) 5滴 /管, 收集 10- 15管。  6) 5 drops / tube, collect 10-15 tubes.
7)用液体闪烁仪监测同位素量  7) Monitor the amount of isotope with a liquid scintillator
8)合并第一峰的收集液后即为所需制备的 32P- Probe (第二峰为游离 γ-32Ρ-(1ΑΤΡ)。 预杂交 8) The 32 P-Probe (the second peak is free γ- 32 P- (1ΑΤΡ)) is prepared after combining the collection solutions of the first peak. Pre-hybridization
将样膜置于塑料袋中,加入 3- 10mg预杂交液(10xDenhardt's;6xSSC, 0. lmg/ml The sample membrane was placed in a plastic bag, and 3- 10 mg of prehybridization solution (10xDenhardt's; 6xSSC, 0.1 mg / ml) was added.
CT DNA (小牛胸腺 DNA)。), 封好袋口后, 68DC水浴摇 2小时。 CT DNA (calf thymus DNA). ). After sealing the bag, shake in a 68 D C water bath for 2 hours.
杂交  Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42°C水浴摇过夜。 洗膜: '  Cut a corner of the plastic bag, add the prepared probe, seal the bag, and shake it at 42 ° C in a water bath overnight. Wash film: '
高强度洗膜:  High-intensity washing film:
1 ) 取出已杂交好的样膜。  1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中, 40°C洗 15分钟 ( 2次)。  2) 2xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1%SDS中, 40。C洗 15分钟 ( 2次)。  3) 0.1xSSC, 0.1% SDS, 40. C Wash for 15 minutes (twice).
4) 0. lxSSC, 0.1°/。SDS中, 55°C洗 30分钟 (2次), 室温晾干。 低强度洗膜:  4) 0. lxSSC, 0.1 ° /. Wash in SDS at 55 ° C for 30 minutes (twice) and dry at room temperature. Low-intensity washing film:
1 ) 取出已杂交好的样膜。  1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中 , 37°C洗 15分钟 ( 2次)。  2) 2xSSC, 0.1% SDS, wash at 37 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1%SDS中, 37°C洗 15分钟 ( 2次)。  3) 0.1xSSC, 0.1% SDS, wash at 37 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0.1°/。SDS中, 40°C洗 15分钟 ( 2次), 室温晾干。  4) 0.1xSSC, 0.1 ° /. In SDS, wash at 40 ° C for 15 minutes (twice) and dry at room temperature.
X -光自显影: -70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。 X-ray autoradiography: -70 ° C, X-ray autoradiography (compression time depends on the radioactivity of the hybrid spot).
实验结果:  Experimental results:
釆用低强度洗膜条件所进行的杂交实验,以上两个探针杂交斑放射性强弱没有 明显区别; 而釆用高强度洗膜条件所进行的杂交实验,探针 1的杂交斑放射性强度 明显强于另一个探针杂交斑的放射性强度。因而可用探针 1定性和定量地分析本发 明的多核苷酸在不同组织中的存在和差异表达。  釆 The hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radioactive intensity of the above two probe hybrid spots; and 釆 the hybridization experiments performed under high-intensity membrane washing conditions, the radioactive intensity of hybridization spots of probe 1 was obvious. Stronger in radioactivity than the hybridization spot of another probe. Therefore, the presence and differential expression of the polynucleotide of the present invention in different tissues can be analyzed qualitatively and quantitatively with the probe 1.
实施例 7 DNA Microarray Example 7 DNA Microarray
基因芯片或基因微矩阵 (DM Mi croarray )是目前许多国家实验室和大制药公 司都在着手研制和开发的新技术, 它是指将大量的靶基因片段有序地、高密度地排 列在玻璃、 硅等载体上, 然后用荧光检测和计算机软件进行数据的比较和分析, 以 达到快速、 高效、 高通量地分析生物信息的目的。 本发明的多核苷酸可作为靶 DNA 用于基因芯片技术用于高通量研究新基因功能;寻找和筛选组织特异性新基因特别 是肿瘤等疾病相关新基因; 疾病的诊断, 如遗传性疾病。 其具体方法步骤在文献中 已有多种报道, 如可参阅文献 DeRi s i , J. L. , Lyer, V. &Brown, P. 0.  Gene chip or gene micro-matrix (DM Microarray) is a new technology currently being developed by many national laboratories and large pharmaceutical companies. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass. , Silicon and other carriers, and then use fluorescence detection and computer software to compare and analyze the data, in order to achieve the purpose of rapid, efficient, high-throughput analysis of biological information. The polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; searching for and screening new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases . The specific method steps have been reported in the literature in various ways.
(1997) Sc ience278, 680-686.及文献 He l le, R. A., Schema, M. , Cha i, A. , Sha lom, D. , (1997) PNAS 94: 2150-2155. (1997) Science 278, 680-686. And literatures Helle, R. A., Schema, M., Cha i, A., Sha lom, D., (1997) PNAS 94: 2150-2155.
(一 ) 点样  (A) spotting
各种不同的全长 cDNA共计 4000条多核苷酸序列作为靶 DNA,其中包括本发明 的多核苷酸。 将它们分别通过 PCR 进行扩增, 纯化所得扩增产物后将其浓度调到 500ng/u l左右, 用 Car tes ian 7500点样仪(购自美国 Car tes ian公司)点于坡璃介 质上, 点与点之间的距离为 280 μ ηι。 将点样后的玻片进行水合、 干燥、 置于紫外 交联仪中交联, 洗脱后干燥使 DM固定在玻璃片上制备成芯片。其具体方法步骤在 文献中已有多种报道, 本实施例的点样后处理步骤是:  A total of 4,000 polynucleotide sequences of various full-length cDNAs are used as target DNA, including the polynucleotide of the present invention. They were amplified by PCR respectively. After purification, the concentration of the amplified product was adjusted to about 500 ng / ul, and spotted on a sloped medium using a Cartesian 7500 spotter (purchased from Cartesian Company, USA) The distance from the point is 280 μ ηι. The spotted slides were hydrated, dried, and cross-linked in a UV cross-linker. After elution, the slides were fixed to fix the DM on the glass slides to prepare chips. The specific method steps have been variously reported in the literature. The post-spot processing steps of this embodiment are:
1. 潮湿环境中水合 4小时;  1. Hydration in a humid environment for 4 hours;
2. 0. 2%SDS洗涤 1分钟;  2. 0.2% SDS was washed for 1 minute;
3. ddH20洗涤两次, 每次 1分钟; 3. Wash twice with ddH 2 0 for 1 minute each time;
4. NaB 封闭 5分钟;  4. NaB is blocked for 5 minutes;
5. 95°C水中 2分钟;  5. 95 ° C water for 2 minutes;
6. 0. 2%SDS洗涤 1分钟;  6. Wash with 0.2% SDS for 1 minute;
7. ddH20冲洗两次; 8. 凉干, 25°C储存于暗处备用。 7. Rinse twice with ddH 2 0; 8. Dry and store at 25 ° C in the dark for future use.
(二)探针标记  (Two) probe marking
用一步法分别从人体混合组织与机体特定组织 (或经过刺激的细胞株) 中抽 提总 mRNA, 并用 Ol igotex mRNA Midi Ki t (购自 QiaGen公司)纯化 mRNA,通过反转 录分另1 J将荧光试剂 Cy3dUTP (5-Amino-propargy l-2'-deoxyur idine 5'-tr iphate coupled to Cy3 f luorescent dye , 购自 Amersham Phamac ia Biotech公司)标记 人体混合组织的 mRNA,用荧光试剂 Cy5dUTP (5- Amino- propargyl- 2'- deoxyur idine 5'-tr iphate coupled to Cy5 f luorescent dye, 购自 Amersham Phamac ia Biotech 公司)标记机体特定组织 (或经过刺激的细胞株) mRNA, 经纯化后制备出探针。 具 体步骤参照及方法见: Total mRNA was extracted from human mixed tissues and specific tissues (or stimulated cell lines) in one step, and the mRNA was purified with Ol igotex mRNA Midi Ki t (purchased from QiaGen), and another 1 J was separated by reverse transcription. Cy3dUTP (5-Amino-propargy l-2'-deoxyuridine 5'-tr iphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamac ia Biotech), a fluorescent reagent, was used to label the mRNA of human mixed tissue, and the fluorescent reagent Cy5dUTP (5 -Amino- propargyl- 2'- deoxyur idine 5'-tr iphate coupled to Cy5 f luorescent dye, purchased from Amersham Phamac ia Biotech Company, labeled the specific tissue (or stimulated cell line) mRNA of the body, purified and prepared for detection needle. For specific steps and methods, see:
Schena, Schena,
M., Sha lon, D. , Hel ler, R. (1996) Proc. Nat l. Acad. Sc i. USA. Vol. 93: 10614-10619. S chena, M. , Sha lon, Dar i. , Davi s, R. W. (1995) Sc ience. 270. (20) : 467-480.  M., Sha lon, D., Heller, R. (1996) Proc. Nat l. Acad. Sc i. USA. Vol. 93: 10614-10619. Schena, M., Sha lon, Dar i., Davi s, RW (1995) Sc ience. 270. (20): 467-480.
(三) 杂交  (Three) cross
分别将来自 以上两种组织的探针与芯片一起在 UniHyb™ Hybr idizat ion Combine the probes from the two tissues with the chips at UniHyb ™ Hybr idizat ion
So lut ion (购自 TeleChem公司)杂交液中进行杂交 16 小时, 室温用洗涤液 (l x SSC, 0. 2%SDS ) 洗涤后用 ScanArray 3000扫描仪 (购自美国 Genera l Scanning公 司 )进行扫描, 扫描的图象用 Imagene软件 (美国 Biodi scovery公司) 进行数据 分析处理, 算出每个点的 Cy3/Cy5比值。 Hybridization in Solut ion (purchased from TeleChem) was performed for 16 hours. After washing at room temperature with a washing solution (lx SSC, 0.2% SDS), scanning was performed with a ScanArray 3000 scanner (purchased from Genera Scanning). The scanned image was analyzed and processed with Imagene software (Biodiscovery, USA) to calculate the Cy3 / Cy5 ratio of each point.
以上机体特定组织 (或经过刺激的细胞株)分别为胸腺、 睾丸、 肌肉、 脾脏、 肺、 皮肤、 甲状腺、 肝、 PMA+的 Ecv304细胞株、 PMA -的 Ecv304细胞株、 未饥饿的 L02细胞株、 砷刺激 1小时的 L02细胞株、 砷刺激 6小时的 L02细胞株前列腺、 心、 肺 癌、 胎膀胱、 胎小肠、 胎大肠、 胎胸腺、 胎肌、 胎肝、 胎肾、 胎脾、 胎脑、 胎肺以 及胎心。 根据这 26个 Cy3/Cy5比值绘出折方图。 (图 1 ) 。 由图可见本发明所述的人 磷酸酶 9和人磷酸酶 79表达谱很相似。 工业实用性  The above specific tissues (or stimulated cell lines) are thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv304 cell line, PMA-Ecv304 cell line, non-starved L02 cell line, L02 cell line stimulated by arsenic for 1 hour, L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, Fetal lung and fetal heart. Draw a graph based on these 26 Cy3 / Cy5 ratios. (figure 1 ) . It can be seen from the figure that the expression profiles of human phosphatase 9 and human phosphatase 79 according to the present invention are very similar. Industrial applicability
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗恶性肿瘤、 肾上腺缺乏症、 皮肤病、 各类炎症、 HIV感染和免疫性 疾病等。  The polypeptides of the present invention, as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat malignant tumors, adrenal deficiency, skin diseases, various types of inflammation, HIV infection, and immune diseases.
本发明的多肽(人磷酸酶 9 )专一地水解磷脂分子 C2位脂肪酸, 从而调控细 胞的磷脂水平。 通过研究发现, 本发明的多肽还有很多生物学功能, 包括但不 限于: (1 ) 通过磷脂酶 PLA2调控磷脂酰胆碱(PtdCho)在细胞中的水平, 来调 节细胞的生存和发育能力; (2 ) 通过调控磷脂酶 PLA2的表达可以治疗急性缺 血性肾脏疾病; ( 3 ) 人类 PLA2在磷脂的消化及代谢以及炎症反应前体合成等 重要细胞过程中起作用; (4 )人的磷脂酶 PLA2对精神分裂症也有一定的作用。 The polypeptide (human phosphatase 9) of the present invention specifically hydrolyzes the fatty acid at the C 2 position of the phospholipid molecule, thereby regulating the phospholipid level of the cell. It has been found through research that the polypeptide of the present invention also has many biological functions, including but not It is limited to: (1) regulating the level of phosphatidylcholine (PtdCho) in cells by phospholipase PLA2 to regulate cell survival and development ability; (2) treating acute ischemic kidney disease by regulating the expression of phospholipase PLA2 (3) Human PLA2 plays a role in important cellular processes such as the digestion and metabolism of phospholipids and the synthesis of precursors to inflammatory reactions; (4) Human phospholipase PLA2 also has a certain effect on schizophrenia.
研究还表明, 本发明多肽的拮抗性蛋白对与包括关节炎、 过敏性炎症、 皮 肤炎、 眼炎以及胶原炎等疾病的治疗有效, 并能同时避免由化合物治疗炎症引 起的种种副作用。  Studies have also shown that the antagonist protein of the polypeptide of the present invention is effective for the treatment of diseases including arthritis, allergic inflammation, dermatitis, ophthalmitis, and collagenitis, and can simultaneously avoid various side effects caused by compound-treated inflammation.
本发明的多肽可用于很多疾病的诊断和治疗, 例如, 恶性肿瘤, 内分泌系 统疾病, 神经系统疾病, 免疫性疾病, 人获得性免疫缺乏综合症 (AIDS ) 等等。  The polypeptide of the present invention can be used for the diagnosis and treatment of many diseases, such as malignant tumors, endocrine system diseases, neurological diseases, immune diseases, human acquired immune deficiency syndrome (AIDS), and the like.
利用本发明的多肽可以治疗的发育紊乱症包括: 脊柱裂、 颅脑裂、 无脑畸形、 脑膨出、 孔脑畸形、 Down综合症、 先天性脑积水、 导水管畸形、 软骨发育不全性侏 儒病、 脊柱骨骺发育不良症、 假软骨发育不全症、 Langer-G ied ion综合症、 漏斗胸、 生殖腺发育不全、 先天性肾上腺增生、 尿道上裂、 隐 、 伴有身材矮小的畸形综合 症 (如 Conrad i综合症与 Danbo l t-Clos s综合症) 、 先天性青光眼或白内障、 先天 性晶状体位置异常、 先天性小睑裂、 视网膜发育异常、 先天性视神经萎缩、 先天性 感觉神经性听觉损失、 裂手裂脚症、 畸胎、 Wi l l iams综合症、 Al ag i l le综合症、 贝 魏二氏综合症等等。  Developmental disorders that can be treated using the polypeptides of the present invention include: spina bifida, craniocerebral fissure, anencephaly, malocclusion, foramen deformity, Down syndrome, congenital hydrocephalus, aqueduct malformation, cartilage dysgenesis Dwarfism, spinal epiphyseal dysplasia, pseudochondral dysplasia, Langer-Gied ion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, upper urethral tract, crypt, accompanied by short stature deformity syndrome ( Such as Conrad i syndrome and Danbolt-Clos s syndrome), congenital glaucoma or cataract, congenital lens position abnormality, congenital blepharoplasia, retinal dysplasia, congenital optic atrophy, congenital sensory neurological hearing loss , Cracked hands and feet, teratology, Wi lliams syndrome, Al ag il le syndrome, Bayweed syndrome and so on.
利用本发明的多肽可以治疗的各种肿瘤包括: 包括上皮组织 (如基底上皮、 鳞 形上皮、 粘液细胞等等) 、 (如纤维组织、 脂肪组织、 软骨组织、 平滑肌组织、 血 管和淋巴管内皮组织等等) 、 造血组织 (如 B细胞、 T细胞、 组织细胞等等) 、 中枢 神经组织、 周围神经组织、 内分泌组织、 性腺组织、 特殊组织 (如牙组织等等) 来 源的肿瘤, 例如, 胃癌、 肝癌、 大肠癌、 乳腺癌、 肺癌、 前列腺癌、 宫颈癌、 胰腺 癌、 食道癌等等。  Various tumors that can be treated using the polypeptide of the present invention include: including epithelial tissue (such as basal epithelium, squamous epithelium, mucus cells, etc.), (such as fibrous tissue, adipose tissue, cartilage tissue, smooth muscle tissue, blood vessels and lymphatic endothelial cells Tissue, etc.), hematopoietic tissue (such as B cells, T cells, histiocytes, etc.), central nervous tissue, peripheral nerve tissue, endocrine tissue, gonadal tissue, special tissue (such as dental tissue, etc.) derived tumors, for example, Stomach cancer, liver cancer, colorectal cancer, breast cancer, lung cancer, prostate cancer, cervical cancer, pancreatic cancer, esophageal cancer, etc.
本发明的多肽还是一种免疫调节剂, 具有免疫促进或免疫抑制作用。 本发 明的多肽可用于一些疾病的治疗, 这些疾病包括免疫反应的无反应性, 或异常 免疫反应, 或宿主防卫无效。 本发明的多肽和其抗体对免疫组织的损伤、 缺陷 或失调类疾病也有作用, 特别是对于造血系统疾病(如恶性贫血) , 皮肤病 (如 牛皮癣) , 自身免疫病 (如类风湿性关节炎) , 放射性疾病以及免疫淋巴细胞 的生成和调节有极为密切的关系。  The polypeptide of the present invention is also an immunomodulatory agent and has an immune promoting or immunosuppressing effect. The polypeptides of the present invention are useful in the treatment of a number of diseases, including non-response to the immune response, or abnormal immune response, or ineffective host defense. The polypeptides and antibodies of the present invention also have effects on damage, defects or disorders of immune tissues, especially for hematopoietic diseases (such as malignant anemia), skin diseases (such as psoriasis), and autoimmune diseases (such as rheumatoid arthritis ), Radiation diseases and the production and regulation of immune lymphocytes are extremely closely related.
本发明多肽的拮抗剂可以用于治疗的炎症反应包括: 变应性反应、 支气管 哮喘、 过敏性肺炎、 成人呼吸窘迫综合症、 肺嗜酸粒细胞增多症、 结节病、 风 湿样关节炎、 类风湿样关节炎、 骨关节炎、 胆囊炎、 肾小球性肾炎、 免疫复合 物型肾小球肾炎、 急性前葡萄膜炎、 骨质疏松症、 皮肤肌炎、 荨麻疹、 特异性 皮炎、 血色素沉着症、 多肌炎、 阿狄森氏病、 格雷夫斯氏病、 慢性活动性肝炎、 肠应急性综合症、 萎缩性胃炎、 系统性红斑狼疮、 重症肌无力、 脑脊髓多发性 硬化、 格林-巴利综合症、 颅内肉芽肿、 Wegener肉芽肿病、 自体免疫甲状腺炎、 自身免疫性间质性肾炎、 溃疡性结肠炎、 贫血、 胰腺炎、 节段性回肠炎、 心肌 炎、 动脉粥样硬化、 多发性硬皮病、 以及感染和外伤引起的炎症等等。 Inflammatory reactions that the antagonists of the polypeptides of the present invention can use for treatment include: allergic reactions, bronchial asthma, allergic pneumonia, adult respiratory distress syndrome, pulmonary eosinophilia, sarcoidosis, rheumatoid arthritis, Rheumatoid arthritis, osteoarthritis, cholecystitis, glomerulonephritis, immune complex Types of glomerulonephritis, acute anterior uveitis, osteoporosis, dermatomyositis, urticaria, atopic dermatitis, hemochromatosis, polymyositis, Addison's disease, Graves' disease, chronic Active hepatitis, intestinal emergency syndrome, atrophic gastritis, systemic lupus erythematosus, myasthenia gravis, cerebral spinal cord multiple sclerosis, Guillain-Barre syndrome, intracranial granulomatosis, Wegener granulomatosis, autoimmune thyroiditis , Autoimmune interstitial nephritis, ulcerative colitis, anemia, pancreatitis, segmental ileitis, myocarditis, atherosclerosis, multiple scleroderma, and inflammation caused by infection and trauma, etc.
本发明也提供了筛选化合物以鉴定提高(激动剂)或阻遏(拮抗剂)人磷酸酶 9的药剂的方法。 激动剂提高人磷酸酶 9刺激细胞增殖等生物功能, 而拮抗剂阻 止和治疗与细胞过度增殖有关的紊乱如各种癌症。 例如, 能在药物的存在下, 将 哺乳动物细胞或表达人磷酸酶 9的膜制剂与标记的人磷酸酶 9一起培养。然后测 定药物提高或阻遏此相互作用的能力。  The invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) human phosphatase 9. Agonists enhance biological functions such as human phosphatase 9 stimulating cell proliferation, while antagonists block and treat disorders related to excessive cell proliferation, such as various cancers. For example, mammalian cells or membrane preparations expressing human phosphatase 9 can be cultured with labeled human phosphatase 9 in the presence of a drug. The ability of the drug to increase or block this interaction is then measured.
人磷酸酶 9的拮抗剂包括筛选出的抗体、 化合物、 受体缺失物和类似物等。 人磷酸酶 9的拮抗剂可以与人磷酸酶 9结合并消除其功能,或是抑制该多肽的产 生, 或是与该多肽的活性位点结合使该多肽不能发挥生物学功能。  Antagonists of human phosphatase 9 include antibodies, compounds, receptor deletions, and the like that have been screened. An antagonist of human phosphatase 9 can bind to human phosphatase 9 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide so that the polypeptide cannot perform a biological function.
在筛选作为拮抗剂的化合物时, 可以将人磷酸酶 9加入生物分析测定中, 通 过测定化合物对人磷酸酶 9和其受体之间相互作用的影响来确定化合物是否是 拮抗剂。 用上述筛选化合物的同样方法, 可以筛选出起拮抗剂作用的受体缺失物 和类似物。能与人磷酸酶 9结合的多肽分子可通过筛选由各种可能组合的氨基酸 结合于固相物组成的随机多肽库而获得。 筛选时, 一般应对人磷酸酶 9分子进行 标记。  When screening compounds as antagonists, human phosphatase 9 can be added to a bioanalytical assay to determine whether the compound is an antagonist by measuring the effect of the compound on the interaction between human phosphatase 9 and its receptor. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds. Polypeptide molecules capable of binding to human phosphatase 9 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. When screening, generally 9 molecules of human phosphatase should be labeled.
本发明提供了用多肽, 及其片段、 衍生物、 类似物或它们的细胞作为抗原以 生产抗体的方法。 这些抗体可以是多克隆抗体或单克隆抗体。 本发明还提供了针 对人磷酸酶 9抗原决定簇的抗体。 这些抗体包括(但不限于): 多克隆抗体、 单克 隆抗体、 嵌合抗体、 单链抗体、 Fab片段和 Fab表达文库产生的片段。  The present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen. These antibodies can be polyclonal or monoclonal antibodies. The invention also provides antibodies against human phosphatase 9 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments produced by Fab expression libraries.
多克隆抗体的生产可用人磷酸酶 9直接注射免疫动物(如家兔, 小鼠, 大鼠 等) 的方法得到, 多种佐剂可用于增强免疫反应, 包括但不限于弗氏佐剂等。 制 备人磷酸酶 9的单克隆抗体的技术包括但不限于杂交瘤技术(Koh l er and  Polyclonal antibodies can be produced by injecting human phosphatase 9 directly into immunized animals (such as rabbits, mice, rats, etc.). A variety of adjuvants can be used to enhance the immune response, including but not limited to Freund's adjuvant. Techniques for preparing monoclonal antibodies to human phosphatase 9 include, but are not limited to, hybridoma technology (Kohler and
M i l s t e i n. Na t ure, 1975 , 256: 495-497) , 三瘤技术, 人 Β-细胞杂交瘤技术, EBV- 杂交瘤技术等。将人恒定区和非人源的可变区结合的嵌合抗体可用已有的技术生 产(Mor r i s on e t a l ,PNAS, 1985, 81: 685 1)。 而已有的生产单链抗体的技术(U. S. Pa t No. 4946778)也可用于生产抗人磷酸酶 9的单链抗体。 M i s t e i n. Na ture, 1975, 256: 495-497), three tumor technology, human beta-cell hybridoma technology, EBV-hybridoma technology, etc. Chimeric antibodies that bind human constant regions and non-human-derived variable regions can be produced using existing techniques (Morris on e t a l, PNAS, 1985, 81: 685 1). The existing technology for producing single chain antibodies (U.S. Pat No. 4946778) can also be used to produce single chain antibodies against human phosphatase 9.
抗人磷酸酶 9的抗体可用于免疫组织化学技术中,检测活检标本中的人磷酸 酶 9。 Anti-human phosphatase 9 antibody can be used in immunohistochemistry to detect human phosphate in biopsy specimens Enzyme 9.
与人磷酸酶 9结合的单克隆抗体也可用放射性同位素标记,注入体内可跟踪 其位置和分布。这种放射性标记的抗体可作为一种非创伤性诊断方法用于肿瘤细 胞的定位和判断是否有转移。  Monoclonal antibodies that bind to human phosphatase 9 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
抗体还可用于设计针对体内某一特殊部位的免疫毒素。如人磷酸酶 9高亲和 性的单克隆抗体可与细菌或植物毒素(如白喉毒素, 蓖麻蛋白, 红豆碱等)共价结 合。 一种通常的方法是用巯基交联剂如 SPDP, 攻击抗体的氨基, 通过二硫键的 交换, 将毒素结合于抗体上, 这种杂交抗体可用于杀灭人磷酸酶 9阳性的细胞。  Antibodies can also be used to design immunotoxins that target a particular part of the body. For example, human phosphatase 9 high affinity monoclonal antibodies can covalently bind to bacterial or plant toxins (such as diphtheria toxin, ricin, ormosine, etc.). A common method is to attack the amino group of the antibody with a thiol cross-linking agent such as SPDP, and toxins are bound to the antibody through disulfide exchange. This hybrid antibody can be used to kill human phosphatase 9 positive cells.
本发明中的抗体可用于治疗或预防与人磷酸酶 9相关的疾病。给予适当剂量 的抗体可以刺激或阻断人磷酸酶 9的产生或活性。  The antibodies of the present invention can be used to treat or prevent diseases related to human phosphatase 9. Administration of an appropriate dose of the antibody can stimulate or block the production or activity of human phosphatase 9.
本发明还涉及定量和定位检测人磷酸酶 9水平的诊断试验方法。这些试验是 本领域所熟知的, 且包括 FISH测定和放射免疫测定。 试验中所检测的人磷酸酶 9水平, 可以用作解释人磷酸酶 9在各种疾病中的重要性和用于诊断人磷酸酶 9 起作用的疾病。  The invention also relates to a diagnostic test method for quantitative and localized detection of human phosphatase 9 levels. These tests are well known in the art and include FISH assays and radioimmunoassays. The level of human phosphatase 9 detected in the test can be used to explain the importance of human phosphatase 9 in various diseases and to diagnose diseases in which human phosphatase 9 plays a role.
本发明的多肽还可用作肽谱分析, 例如, 多肽可用物理的、 化学或酶进行特 异性切割, 并进行一维或二维或三维的凝胶电泳分析,更好的是进行质谱分析。  The polypeptide of the present invention can also be used for peptide mapping analysis. For example, the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry.
编码人磷酸酶 9的多核苷酸也可用于多种治疗目的。基因治疗技术可用于治 疗由于人磷酸酶 9的无表达或异常 /无活性表达所致的细胞增殖、 发育或代谢异 常。 重组的基因治疗载体(如病毒载体)可设计用于表达变异的人磷酸酶 9 , 以抑 制内源性的人磷酸酶 9活性。 例如, 一种变异的人磷酸酶 9可以是缩短的、 缺失 了信号传导功能域的人磷酸酶 9, 虽可与下游的底物结合,但缺乏信号传导活性。 因此重组的基因治疗载体可用于治疗人磷酸酶 9表达或活性异常所致的疾病。来 源于病毒的表达载体如逆转录病毒、 腺病毒、 腺病毒相关病毒、 单纯疱疹病毒、 细小病毒等可用于将编码人磷酸酶 9的多核苷酸转移至细胞内。构建携带编码人 磷酸酶 9的多核苷酸的重组病毒载体的方法可见于已有文献(Sambrook, et a l . ) 。 另外重组编码人磷酸酶 9的多核苷酸可包装到脂质体中转移至细胞内。  The polynucleotide encoding human phosphatase 9 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormalities in cell proliferation, development or metabolism caused by the non-expression or abnormal / inactive expression of human phosphatase 9. Recombinant gene therapy vectors (such as viral vectors) can be designed to express mutated human phosphatase 9 to inhibit endogenous human phosphatase 9 activity. For example, a mutant human phosphatase 9 may be a shortened human phosphatase 9 lacking a signaling domain, and although it can bind to downstream substrates, it lacks signaling activity. Therefore, the recombinant gene therapy vector can be used for treating diseases caused by abnormal expression or activity of human phosphatase 9. Expression vectors derived from viruses such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus and the like can be used to transfer a polynucleotide encoding human phosphatase 9 into cells. Methods for constructing recombinant viral vectors carrying a polynucleotide encoding human phosphatase 9 can be found in the existing literature (Sambrook, et al.). In addition, a recombinant polynucleotide encoding human phosphatase 9 can be packaged into liposomes and transferred into cells.
多核苷酸导入组织或细胞内的方法包括: 将多核苷酸直接注入到体内组织 中; 或在体外通过载体 (如病毒、 噬菌体或质粒等)先将多核苷酸导入细胞中, 再 将细胞移植到体内等。  Methods for introducing a polynucleotide into a tissue or cell include: injecting the polynucleotide directly into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
抑制人磷酸酶 9 mRNA的寡核苷酸(包括反义 RNA和 DNA)以及核酶也在本发 明的范围之内。 核酶是一种能特异性分解特定 RNA的酶样 RNA分子, 其作用机制 是核酶分子与互补的靶 RNA特异性杂交后进行核酸内切作用。 反义的 RNA和 DNA 及核酶可用已有的任何 RNA或 DNA合成技术获得,如固相磷酸酰胺化学合成法合 成寡核苷酸的技术已广泛应用。反义 RNA分子可通过编码该 RNA的 DNA序列在体 外或体内转录获得。 这种 DNA序列已整合到载体的 RNA聚合酶启动子的下游。 为 了增加核酸分子的稳定性,可用多种方法对其进行修饰,如增加两侧的序列长度, 核糖核苷之间的连接应用磷酸硫酯键或肽键而非磷酸二酯键。 Oligonucleotides (including antisense RNA and DNA) and ribozymes that inhibit human phosphatase 9 mRNA are also within the scope of the present invention. A ribozyme is an enzyme-like RNA molecule that can specifically decompose a specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation. Antisense RNA and DNA Ribozymes and ribozymes can be obtained by any existing RNA or DNA synthesis technology. For example, the technology of solid phase phosphate amide chemical synthesis to synthesize oligonucleotide has been widely used. Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the ribonucleosides are connected by phosphorothioate or peptide bonds instead of phosphodiester bonds.
编码人磷酸酶 9的多核苷酸可用于与人磷酸酶 9的相关疾病的诊断。编码人 磷酸酶 9的多核苷酸可用于检测人磷酸酶 9的表达与否或在疾病状态下人磷酸酶 9的异常表达。 如编码人磷酸酶 9的 DNA序列可用于对活检标本进行杂交以判断 人磷酸酶 9的表达状况。 杂交技术包括 Southern印迹法, Nor thern印迹法、 原 位杂交等。 这些技术方法都是公开的成熟技术, 相关的试剂盒都可从商业途径得 到。 本发明的多核苷酸的一部分或全部可作为探针固定在微阵列(M i c roar r ay) 或 DM芯片(又称为 "基因芯片")上, 用于分析组织中基因的差异表达分析和基 因诊断。 用人磷酸酶 9特异的引物进行 RNA-聚合酶链反应(RT- PCR)体外扩增也 可检测人磷酸酶 9的转录产物。  The polynucleotide encoding human phosphatase 9 can be used for the diagnosis of diseases related to human phosphatase 9. A polynucleotide encoding human phosphatase 9 can be used to detect the expression of human phosphatase 9 or the abnormal expression of human phosphatase 9 in a disease state. For example, a DNA sequence encoding human phosphatase 9 can be used to hybridize biopsy specimens to determine the expression of human phosphatase 9. Hybridization techniques include Southern blotting, Nor thern blotting, and in situ hybridization. These techniques and methods are all mature and open technologies, and related kits are commercially available. Part or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray (Mic roar r ay) or a DM chip (also known as a "gene chip") for analyzing differential expression analysis of genes in tissues and Genetic diagnosis. Human phosphatase 9 specific primers can also be used to detect human phosphatase 9 transcripts by in vitro amplification of RNA-polymerase chain reaction (RT-PCR).
检测人磷酸酶 9基因的突变也可用于诊断人磷酸酶 9相关的疾病。人磷酸酶 突变的形式包括与正常野生型人磷酸酶 9 DNA序列相比的点突变、 易位、 缺失、 重组和其它任何异常等。 可用已有的技术如 Southern印迹法、 DNA序列分析、 PCR和原位杂交检测突变。 另外, 突变有可能影响蛋白的表达, 因此用 Nor thern 印迹法、 We s t ern印迹法可间接判断基因有无突变。  Detection of mutations in the human phosphatase 9 gene can also be used to diagnose human phosphatase 9-related diseases. Human phosphatase mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to normal wild-type human phosphatase 9 DNA sequences. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect the expression of proteins. Therefore, Nor thern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
本发明的序列对染色体鉴定也是有价值的。 该序列会特异性地针对某条人 染色体具体位置且并可以与其杂交。 目前, 需要鉴定染色体上的各基因的具体 位点。 现在, 只有很少的基于实际序列数据(重复多态性)的染色体标记物可用 于标记染色体位置。 根据本发明, 为了将这些序列与疾病相关基因相关联, 其 重要的第一步就是将这些 DNA序列定位于染色体上。  The sequences of the invention are also valuable for chromosome identification. The sequence specifically targets a specific position on a human chromosome and can hybridize to it. Currently, specific sites for each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) are available for marking chromosome positions. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these DNA sequences on a chromosome.
简而言之, 根据 cDNA制备 PCR引物(优选 15- 35 bp) , 可以将序列定位于染色 体上。 然后, 将这些引物用于 PCR筛选含各条人染色体的体细胞杂合细胞。 只有 那些含有相应于引物的人基因的杂合细胞会产生扩增的片段。  In short, PCR primers (preferably 15-35 bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those heterozygous cells containing the human gene corresponding to the primer will produce amplified fragments.
体细胞杂合细胞的 PCR定位法, 是将 DNA定位到具体染色体的快捷方法。 使 用本发明的寡核苷酸引物, 通过类似方法, 可利用一组来自特定染色体的片段 或大量基因组克隆而实现亚定位。 可用于染色体定位的其它类似策略包括原位 杂交、 用标记的流式分选的染色体预筛选和杂交预选, 从而构建染色体特异的 c醒库。 将 cDNA克隆与中期染色体进行荧光原位杂交(FI SH) , 可以在一个步骤中精 确地进行染色体定位。 此技术的综述, 参见 Verma等, Human Chromosomes: a Manua l of Bas ic Techniques, Pergamon Pres s, New York (1988)。 PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes. Using the oligonucleotide primers of the present invention, by a similar method, a set of fragments from a specific chromosome or a large number of genomic clones can be used to achieve sublocalization. Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct a chromosome-specific c library. Fluorescent in situ hybridization (FI SH) of cDNA clones and metaphase chromosomes allows precise chromosomal localization in one step. For a review of this technique, see Verma et al., Human Chromosomes: a Manua l of Basic Techniques, Pergamon Pres s, New York (1988).
一旦序列被定位到准确的染色体位置, 此序列在染色体上的物理位置就可 以与基因图数据相关联。 这些数据可见于例如, V. Mckus ick,Mende l ian  Once the sequence is located at the exact chromosomal location, the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mende l ian
Inher i tance in Man (可通过与 Johns Hopk ins Univer s i ty We l ch Med ica l Library联机获得)。 然后可通过连锁分析, 确定基因与业已定位到染色体区域 上的疾病之间的关系。 Inher i tance in Man (available online with Johns Hopk ins Univer s Wet ch Med ica l Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
接着, 需要测定患病和未患病个体间的 cDNA或基因组序列差异。 如果在一 些或所有的患病个体中观察到某突变, 而该突变在任何正常个体中未观察到, 则该突变可能是疾病的病因。 比较患病和未患病个体, 通常涉及首先寻找染色 体中结构的变化,如从染色体水平可见的或用基于 cDNA序列的 PCR可检测的缺失 或易位。 根据目前的物理作图和基因定位技术的分辨能力, 被精确定位至与疾 病有关的染色体区域的 cDNA, 可以是 50至 500个潜在致病基因间之一种(假定 1 兆碱基作图分辨能力和每 20kb对应于一个基因)。  Next, the difference in cDNA or genomic sequence between the affected and unaffected individuals needs to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in chromosomes, such as deletions or translocations that are visible at the chromosomal level or detectable with cDNA sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the chromosomal region associated with the disease can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution Capacity and each 20kb corresponds to a gene).
可以将本发明的多肽、 多核苷酸及其模拟物、 激动剂、 拮抗剂和抑制剂与合 适的药物载体组合后使用。 这些载体可以是水、 葡萄糖、 乙醇、 盐类、 缓冲液、 甘油以及它们的组合。组合物包含安全有效量的多肽或拮抗剂以及不影响药物效 果的载体和赋形剂。 这些组合物可以作为药物用于疾病治疗。  The polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier. These carriers can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof. The composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
本发明还提供含有一种或多种容器的药盒或试剂盒,容器中装有一种或多种 本发明的药用组合物成分。 与这些容器一起, 可以有由制造、 使用或销售药品或 生物制品的政府管理机构所给出的指示性提示, 该提示反映出生产、 使用或销售 的政府管理机构许可其在人体上施用。 此外, 本发明的多肽可以与其它的治疗化 合物结合使用。  The present invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention. Along with these containers, there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which reminders permit their administration on the human body by government agencies that manufacture, use, or sell them. In addition, the polypeptide of the present invention can be used in combination with other therapeutic compounds.
药物组合物可以以方便的方式给药, 如通过局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻内或皮内的给药途径。 人磷酸酶 9以有效地治疗和 /或预防具体的适应 症的量来给药。 施用于患者的人磷酸酶 9的量和剂量范围将取决于许多因素, 如 给药方式、 待治疗者的健康条件和诊断医生的判断。  The pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration. Human phosphatase 9 is administered in an amount effective to treat and / or prevent a specific indication. The amount and dosage range of human phosphatase 9 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.

Claims

权 利 要 求 书 Claim
1、 一种分离的多肽-人磷酸酶 9, 其特征在于它包含有: SEQ ID N0: 2所示的 氨基酸序列的多肽、 或其多肽的活性片段、 类似物或衍生物。  1. An isolated polypeptide-human phosphatase 9, characterized in that it comprises: a polypeptide having the amino acid sequence shown in SEQ ID NO: 2 or an active fragment, analog or derivative thereof.
2、 如权利要求 1所述的多肽, 其特征在于所述多肽、 类似物或衍生物的氨基酸 序列具有与 SEQ ID NO: 2所示的氨基酸序列至少 95%的相同性。  2. The polypeptide according to claim 1, characterized in that the amino acid sequence of the polypeptide, analog or derivative has at least 95% identity with the amino acid sequence shown in SEQ ID NO: 2.
3、 如权利要求 2所述的多肽, 其特征在于它包含具有 SEQ ID NO: 2所示的氨基 酸序列的多肽。  3. The polypeptide according to claim 2, characterized in that it comprises a polypeptide having the amino acid sequence shown in SEQ ID NO: 2.
4、 一种分离的多核苷酸, 其特征在于所述多核苷酸包含选自下组中的一种: 4. An isolated polynucleotide, characterized in that said polynucleotide comprises one selected from the group consisting of:
(a) 编码具有 SEQ ID NO: 2所示氨基酸序列的多肽或其片段、 类似物、 衍生 物的多核苷酸; (a) a polynucleotide encoding a polypeptide having an amino acid sequence shown in SEQ ID NO: 2 or a fragment, analog, or derivative thereof;
(b) 与多核苷酸 (a ) 互补的多核苷酸; 或  (b) a polynucleotide complementary to polynucleotide (a); or
(c) 与 (a ) 或 (b ) 有至少 70%相同性的多核苷酸。  (c) A polynucleotide that is at least 70% identical to (a) or (b).
5、 如权利要求 4所述的多核苷酸, 其特征在于所述多核苷酸包含编码具有 SEQ ID NO: 2所示氨基酸序列的多核苷酸。  5. The polynucleotide according to claim 4, wherein the polynucleotide comprises a polynucleotide encoding an amino acid sequence represented by SEQ ID NO: 2.
6、如权利要求 4所述的多核苷酸,其特征在于所述多核苷酸的序列包含有 SEQ ID NO: 1中 299-599位的序列或 SEQ ID NO: 1中 1-1842位的序列。 6. The polynucleotide according to claim 4, characterized in that the sequence of the polynucleotide comprises the sequence of positions 299-599 in SEQ ID NO: 1 or the sequence of positions 1-1842 in SEQ ID NO: 1. .
7、 一种含有外源多核苷酸的重组载体, 其特征在于它是由权利要求 4-6中的任 一权利要求所述多核苷酸与质粒、 病毒或运载体表达载体构建而成的重组载体。 7. A recombinant vector containing an exogenous polynucleotide, characterized in that it is a recombinant constructed from the polynucleotide according to any one of claims 4 to 6 with a plasmid, virus or a carrier expression vector Carrier.
8、 一种含有外源多核苷酸的遗传工程化宿主细胞, 其特征在于它是选自于下列 一种宿主细胞: 8. A genetically engineered host cell containing an exogenous polynucleotide, characterized in that it is selected from one of the following host cells:
(a) 用权利要求 7所述的重组载体转化或转导的宿主细胞; 或  (a) a host cell transformed or transduced with the recombinant vector of claim 7; or
(b) 用权利要求 4-6中的任一权利要求所述多核苷酸转化或转导的宿主细 胞。  (b) a host cell transformed or transduced with a polynucleotide according to any one of claims 4-6.
9、 一种具有人磷酸酶 9活性的多肽的制备方法, 其特征在于所述方法包括: (a) 在表达人磷酸酶 9条件下, 培养权利要求 8所述的工程化宿主细胞; 9. A method for preparing a polypeptide having human phosphatase 9 activity, characterized in that the method comprises: (a) culturing the engineered host cell according to claim 8 under the condition of expressing human phosphatase 9;
(b) 从培养物中分离出具有人磷酸酶 9活性的多肽。 (b) Isolating a polypeptide having human phosphatase 9 activity from the culture.
10、 一种能与多肽结合的抗体,其特征在于所述抗体是能与人磷酸酶 9特异性结 合的抗体。  10. An antibody capable of binding to a polypeptide, characterized in that said antibody is an antibody capable of specifically binding to human phosphatase 9.
11、 一类模拟或调节多肽活性或表达的化合物, 其特征在于它们是模拟、 促进、 拮抗或抑制人磷酸酶 9的活性的化合物。  11. A class of compounds that mimic or regulate the activity or expression of a polypeptide, characterized in that they are compounds that mimic, promote, antagonize or inhibit the activity of human phosphatase 9.
12、 如权利要求 11所述的化合物, 其特征在于它是 SEQ ID NO: 1所示的多核苷 酸序列或其片段的反义序列。 12. The compound according to claim 11, characterized in that it is an antisense sequence of a polynucleotide sequence or a fragment thereof as shown in SEQ ID NO: 1.
13、 一种权利要求 11所述化合物的应用, 其特征在于所述化合物用于调节人磷 酸酶 9在体内、 体外活性的方法。 13. Use of a compound according to claim 11, characterized in that the compound is used for a method for regulating the activity of human phosphatase 9 in vivo and in vitro.
14、 一种检测与权利要求 1-3中的任一权利要求所述多肽相关的疾病或疾病易 感性的方法, 其特征在于其包括检测所述多肽的表达量, 或者检测所述多肽的 活性, 或者检测多核苷酸中引起所述多肽表达量或活性异常的核苷酸变异。 14. A method for detecting a disease or susceptibility to a disease associated with a polypeptide according to any one of claims 1-3, characterized in that it comprises detecting the expression level of the polypeptide, or detecting the activity of the polypeptide Or detecting a nucleotide variation in a polynucleotide that causes abnormal expression or activity of the polypeptide.
15、 如权利要求 1-3中的任一权利要求所述多肽的应用, 其特征在于它应用于 筛选人磷酸酶 9的模拟物、 激动剂, 拮抗剂或抑制剂; 或者用于肽指紋图谱鉴 定。 15. Use of a polypeptide according to any one of claims 1-3, characterized in that it is used for screening mimetics, agonists, antagonists or inhibitors of human phosphatase 9; or for peptide fingerprinting Identification.
16、 如权利要求 4- 6中的任一权利要求所述的核酸分子的应用, 其特征在于它 作为引物用于核酸扩增反应, 或者作为探针用于杂交反应, 或者用于制造基因 芯片或微阵列。  16. The use of a nucleic acid molecule according to any one of claims 4 to 6, characterized in that it is used as a primer for a nucleic acid amplification reaction, or as a probe for a hybridization reaction, or for manufacturing a gene chip. Or microarray.
17、 如权利要求 1-6及 11中的任一权利要求所述的多肽、 多核苷酸或化合物的 应用, 其特征在于用所述多肽、 多核苷酸或其模拟物、 激动剂、 拮抗剂或抑制 剂以安全有效剂量与药学上可接受的载体组成作为诊断或治疗与人磷酸酶 9异 常相关的疾病的药物组合物。  17. Use of a polypeptide, polynucleotide or compound according to any one of claims 1-6 and 11, characterized in that said polypeptide, polynucleotide or mimetic, agonist, antagonist is used Or the inhibitor is composed of a safe and effective dose with a pharmaceutically acceptable carrier as a pharmaceutical composition for diagnosing or treating a disease associated with human phosphatase 9 abnormality.
18、 权利要求 1-6及 11 中的任一权利要求所述的多肽、 多核苷酸或化合物的应 用, 其特征在于用所述多肽、 多核苷酸或化合物制备用于治疗如恶性肿瘤, 血 液病, HIV感染和免疫性疾病和各类炎症的药物。  18. The use of a polypeptide, polynucleotide or compound according to any one of claims 1-6 and 11, characterized in that the polypeptide, polynucleotide or compound is used for preparing for treating malignant tumors, blood, etc. Disease, HIV infection and immune diseases and drugs of various inflammations.
PCT/CN2001/000582 2000-04-27 2001-04-23 A novel polypeptide-homo phosphatase 9 and polynucleotide encoding said polypeptide WO2001081383A1 (en)

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