WO2001066572A3 - Polynucleotides isolated from e. coli of nature b2/d+ a-, and uses thereof - Google Patents

Polynucleotides isolated from e. coli of nature b2/d+ a-, and uses thereof Download PDF

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Publication number
WO2001066572A3
WO2001066572A3 PCT/EP2001/003445 EP0103445W WO0166572A3 WO 2001066572 A3 WO2001066572 A3 WO 2001066572A3 EP 0103445 W EP0103445 W EP 0103445W WO 0166572 A3 WO0166572 A3 WO 0166572A3
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Prior art keywords
coli
nature
group
strains
polynucleotides isolated
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PCT/EP2001/003445
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French (fr)
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WO2001066572A2 (en
WO2001066572A9 (en
Inventor
Edouard Bingen
Stephane Bonacorsi
Olivier Clermont
Xavier Nassif
Colin Tinsley
Original Assignee
Inst Nat Sante Rech Med
Assist Publ Hopitaux De Paris
Edouard Bingen
Stephane Bonacorsi
Olivier Clermont
Xavier Nassif
Colin Tinsley
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
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Publication date
Priority claimed from FR0003145A external-priority patent/FR2806096A1/en
Application filed by Inst Nat Sante Rech Med, Assist Publ Hopitaux De Paris, Edouard Bingen, Stephane Bonacorsi, Olivier Clermont, Xavier Nassif, Colin Tinsley filed Critical Inst Nat Sante Rech Med
Priority to EP01917119A priority Critical patent/EP1328641A2/en
Priority to JP2001565736A priority patent/JP2004512817A/en
Priority to CA002402602A priority patent/CA2402602A1/en
Publication of WO2001066572A2 publication Critical patent/WO2001066572A2/en
Publication of WO2001066572A9 publication Critical patent/WO2001066572A9/en
Priority to US10/238,075 priority patent/US20030148324A1/en
Publication of WO2001066572A3 publication Critical patent/WO2001066572A3/en
Priority to US12/025,365 priority patent/US20090298713A1/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00—Drugs for disorders of the urinary system
    • A61P13/12—Drugs for disorders of the urinary system of the kidneys
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00—Drugs for disorders of the nervous system
    • A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04—Antibacterial agents
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/24—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
    • C07K14/245—Escherichia (G)
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/53—DNA (RNA) vaccination
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/16—Primer sets for multiplex assays

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  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Analytical Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • General Chemical & Material Sciences (AREA)
  • Animal Behavior & Ethology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Wood Science & Technology (AREA)
  • Biomedical Technology (AREA)
  • Neurology (AREA)
  • Neurosurgery (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Urology & Nephrology (AREA)
  • Communicable Diseases (AREA)
  • Psychiatry (AREA)
  • Hospice & Palliative Care (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Oncology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)

Abstract

The present invention relates to products which are of nature B2+ A-, isolated from E. coli, and to their biological applications, in particular their medical (therapeutic, vaccine and diagnostic) and biotechnological applications. In the present application, the expression 'of nature B2+ A-' is intended to mean presence at a frequency greater than 10 % among the E. coli strains of group B2 of the ECOR collection, and at a frequency of less than 10 % among the strains of group A of the same collection. A phylogenic determination method which makes it possible to rapidly and easily distinguish the groups A, B1, B2 and D of the E. coli species with more than 99 % precision is in particular described.
PCT/EP2001/003445 2000-03-10 2001-03-12 Polynucleotides isolated from e. coli of nature b2/d+ a-, and uses thereof WO2001066572A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
EP01917119A EP1328641A2 (en) 2000-03-10 2001-03-12 Polynucleotides isolated from e. coli of nature b2/d+ a-, and uses thereof
JP2001565736A JP2004512817A (en) 2000-03-10 2001-03-12 B2 / D + A-type polynucleotides isolated from Escherichia coli and biological uses of these polynucleotides and their polypeptides
CA002402602A CA2402602A1 (en) 2000-03-10 2001-03-12 Polynucleotides which are of nature b2/d+ a- and which are isolated from e. coli, and biological uses of these polynucleotides and of their polypeptides
US10/238,075 US20030148324A1 (en) 2001-02-02 2002-09-10 Polynucleotides which are of nature B2/D+ A- and which are isolated from E. coli, and biological uses of these polynucleotides and of their polypeptides
US12/025,365 US20090298713A1 (en) 2000-03-10 2008-02-04 Polynucleotides which are of nature b2/d+ a- and which are isolated from e. coli, and biological uses of these polynucleotides and of their polypeptides

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
FR00/03145 2000-03-10
FR0003145A FR2806096A1 (en) 2000-03-10 2000-03-10 A library of DNA fragments of Escherichia coli strains for the phylogenic determination of a given strain comprises polynucleotides of nature B2/D+ A-
FR0101449 2001-02-02
FR01/01449 2001-02-02

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US10/238,075 Continuation-In-Part US20030148324A1 (en) 2000-03-10 2002-09-10 Polynucleotides which are of nature B2/D+ A- and which are isolated from E. coli, and biological uses of these polynucleotides and of their polypeptides

Publications (3)

Publication Number Publication Date
WO2001066572A2 WO2001066572A2 (en) 2001-09-13
WO2001066572A9 WO2001066572A9 (en) 2002-08-15
WO2001066572A3 true WO2001066572A3 (en) 2003-05-01

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Family Applications (1)

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PCT/EP2001/003445 WO2001066572A2 (en) 2000-03-10 2001-03-12 Polynucleotides isolated from e. coli of nature b2/d+ a-, and uses thereof

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EP (1) EP1328641A2 (en)
JP (1) JP2004512817A (en)
CA (1) CA2402602A1 (en)
WO (1) WO2001066572A2 (en)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1342784A1 (en) * 2002-03-06 2003-09-10 Mutabilis S.A. ExPEC-specific proteins, genes encoding them and uses thereof
AU2006214064B2 (en) 2005-02-18 2012-04-26 J. Craig Venter Institute, Inc. Proteins and nucleic acids from meningitis/sepsis-associated escherichia coli
MX291624B (en) 2005-02-18 2011-11-04 Novartis Vaccines & Diagnostic Immunogens from uropathogenic escherichia coli.
WO2007128838A1 (en) * 2006-05-10 2007-11-15 Institut National De La Recherche Agronomique Use of cells containing a specific dna molecule as cytopathic agents to inhibit the proliferation of cells
JP2010500399A (en) 2006-08-16 2010-01-07 ノバルティス アーゲー Immunogen from Urinary Pathogenic Escherichia coli
ITMI20090946A1 (en) 2009-05-28 2010-11-29 Novartis Ag EXPRESSION OF RECOMBINANT PROTEINS
SG178035A1 (en) 2009-07-16 2012-03-29 Novartis Ag Detoxified escherichia coli immunogens
ATE557035T1 (en) * 2009-09-10 2012-05-15 Univ Berlin Freie IDENTIFICATION AND CHARACTERIZATION OF A NOVEL AVIARY PATHOGENIC E. COLI (APEC) FIMBRIAL ADHESIN
EP2736922B1 (en) 2011-07-28 2017-11-01 Universiteit Gent Prevention of salmonella recrudescense
GB2554742A (en) * 2016-10-07 2018-04-11 Bhongir Ravi Treatment
TW202304504A (en) * 2021-04-01 2023-02-01 美商詹森藥物公司 Production of e. coli o18 bioconjugates

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EP0666271A1 (en) * 1994-02-04 1995-08-09 Industrial Farmaceutica Y De Especialidades, S.A. Type 1 and type P fimbriae-adhesins isolated from novel E. coli strains, process for their preparation and uses thereof
WO1996030043A1 (en) * 1995-03-24 1996-10-03 Ophidian Pharmaceuticals Treatment for verotoxin-producing escherichia coli
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Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2078716A1 (en) * 1992-09-21 1994-03-22 Joyce De Azavedo Attaching and effacing protein of enterohemorrhagic e. coli
EP0666271A1 (en) * 1994-02-04 1995-08-09 Industrial Farmaceutica Y De Especialidades, S.A. Type 1 and type P fimbriae-adhesins isolated from novel E. coli strains, process for their preparation and uses thereof
WO1996030043A1 (en) * 1995-03-24 1996-10-03 Ophidian Pharmaceuticals Treatment for verotoxin-producing escherichia coli
WO1998022575A2 (en) * 1996-11-22 1998-05-28 Human Genome Sciences, Inc. Nucleotide sequence of escherichia coli pathogenicity islands

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BINGEN E, PICARD B, BRAHIMI N, MATHY S, DESJARDINS P, ELION J, DENAMUR E: "Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains.", JOURNAL OF INFECTIOUS DISEASES, vol. 177, no. 3, March 1998 (1998-03-01), pages 642 - 650, XP000980536 *
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JP2004512817A (en) 2004-04-30
EP1328641A2 (en) 2003-07-23
CA2402602A1 (en) 2001-09-13
WO2001066572A2 (en) 2001-09-13
WO2001066572A9 (en) 2002-08-15

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