WO2000020452A2 - Hypersensitive response elicitor fragments which are active but do not elicit a hypersensitive response - Google Patents

Hypersensitive response elicitor fragments which are active but do not elicit a hypersensitive response Download PDF

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WO2000020452A2
WO2000020452A2 PCT/US1999/023181 US9923181W WO0020452A2 WO 2000020452 A2 WO2000020452 A2 WO 2000020452A2 US 9923181 W US9923181 W US 9923181W WO 0020452 A2 WO0020452 A2 WO 0020452A2
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gly
fragment
leu
ser
ala
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PCT/US1999/023181
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WO2000020452A9 (en
WO2000020452A3 (en
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Zhong-Min Wei
Hao Fan
Jennifer L. Niggemeyer
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Eden Bioscience Corporation
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Priority to IL14232499A priority Critical patent/IL142324A0/en
Application filed by Eden Bioscience Corporation filed Critical Eden Bioscience Corporation
Priority to AU65085/99A priority patent/AU6508599A/en
Priority to KR1020017004332A priority patent/KR20010080011A/en
Priority to EP99953057A priority patent/EP1119582A2/en
Priority to MXPA01003461A priority patent/MXPA01003461A/en
Priority to CA002344593A priority patent/CA2344593A1/en
Priority to BR9915345-9A priority patent/BR9915345A/en
Priority to JP2000574563A priority patent/JP2002526101A/en
Priority to HU0104245A priority patent/HUP0104245A3/en
Publication of WO2000020452A2 publication Critical patent/WO2000020452A2/en
Publication of WO2000020452A3 publication Critical patent/WO2000020452A3/en
Publication of WO2000020452A9 publication Critical patent/WO2000020452A9/en
Priority to NO20011729A priority patent/NO20011729L/en

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    • C12N15/09Recombinant DNA-technology
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    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
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    • C12N15/8283Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for virus resistance
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    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
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    • C07KPEPTIDES
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    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/21Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Pseudomonadaceae (F)
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    • C07KPEPTIDES
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    • C07K14/24Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
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    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8279Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8279Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
    • C12N15/8286Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A40/00Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
    • Y02A40/10Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
    • Y02A40/146Genetically Modified [GMO] plants, e.g. transgenic plants

Definitions

  • the present invention relates to active fragments of a hypersensitive response elicitor which fragments do not elicit a hypersensitive response.
  • Interactions between bacterial pathogens and their plant hosts generally fall into two categories: (1) compatible (pathogen-host), leading to intercellular bacterial growth, symptom development, and disease development in the host plant; and (2) incompatible (pathogen-nonhost), resulting in the hypersensitive response, a particular type of incompatible interaction occurring, without progressive disease symptoms.
  • compatible pathogen-host
  • incompatible pathogen-nonhost
  • the hypersensitive response is a rapid, localized necrosis that is associated with the active defense of plants against many pathogens (Kiraly, Z., "Defenses Triggered by the Invader: Hypersensitivity,” pages 201-224 in: Plant Disease: An Advanced Treatise. Vol. 5, J.G. Horsfall and E.B. Cowling, ed. Academic Press New York (1980); Klement, Z., "Hypersensitivity,” pages 149-177 in: Phytopatho enie Prokaryotes. Vol. 2, M.S. Mount and G.H. Lacy, ed. Academic Press, New York (1982)).
  • the hypersensitive response elicited by bacteria is readily observed as a tissue collapse if high concentrations (> 10 7 cells/ml) of a limited host-range pathogen like Pseudomonas syringae or Erwinia amylovora are infiltrated into the leaves of nonhost plants (necrosis occurs only in isolated plant cells at lower levels of inoculum)
  • a limited host-range pathogen like Pseudomonas syringae or Erwinia amylovora
  • hrp Lodgren, P.B., et al, "Gene Cluster of Pseudomonas syringae pv. 'phaseolicola' Controls Pathogenicity of Bean Plants and Hypersensitivity on Nonhost Plants," J. Bacteriol. 168:512-22 (1986); Willis, D.K., et al., "hrp Genes of Phytopathogenic Bacteria," Mol. Plant-Microbe Interact. 4:132-138 (1991)). Consequently, the hypersensitive response may hold clues to both the nature of plant defense and the basis for bacterial pathogenicity.
  • hrp genes are widespread in Gram-negative plant pathogens, where they are clustered, conserved, and in some cases interchangeable (Willis, D.K., et al., "hrp Genes of Phytopathogenic Bacteria," Mol. Plant-Microbe Interact. 4:132- 138 (1991); Bonas, U., “hrp Genes of Phytopathogenic Bacteria,” pages 79-98 in: Current Topics in Microbiology and Immunology: Bacterial Pathogenesis of Plants and Animals - Molecular and Cellular Mechanisms. J.L. Dangl, ed. Springer- Verlag, Berlin (1994)).
  • hrp genes encode components of a protein secretion pathway similar to one used by Yersinia, Shigella, and Salmonella spp. to secrete proteins essential in animal diseases (Van Gijsegem, et al., "Evolutionary Conservation of Pathogenicity Determinants Among Plant and Animal Pathogenic Bacteria," Trends Microbiol. 1 :175-180 (1993)).
  • E. amylovora, P. syringae, and P. sol ⁇ n ⁇ ce ⁇ rum hrp genes have been shown to control the production and secretion of glycine-rich, protein elicitors of the hypersensitive response (He, S.Y., et al. "Pseudomonas
  • Syringae pv. Syringae HarpinPss a Protein that is Secreted via the Hrp Pathway and Elicits the Hypersensitive Response in Plants," Cell 73:1255-1266 (1993), Wei, Z.-H., et al., "Hrpl of Erwinia amylovora Functions in Secretion of Harpin and is a Member of aNew Protein Family," J. Bacteriol. 175:7958-7967 (1993); Arlat, M. et al.
  • E. amylovora Ea321 a bacterium that causes fire blight of rosaceous plants, and was designated harpin (Wei, Z.-M., et al, "Harpin, Elicitor of the Hypersensitive Response Produced by the Plant Pathogen Erwinia amylovora," Science 257:85-88 (1992)).
  • harpin is required for E. amylovora to elicit a hypersensitive response in nonhost tobacco leaves and incite disease symptoms in highly susceptible pear fruit. The P.
  • solanacearum GMI1000 PopAl protein has similar physical properties and also elicits the hypersensitive response in leaves of tobacco, which is not a host of that strain (Arlat, et al. "PopAl, a Protein Which Induces a Hypersensitive-like Response on Specific Petunia Genotypes, is Secreted via the Hrp Pathway of Pseudomonas solanacearum," EMBO J. 13:543-53 (1994)).
  • P. solanacearum popA mutants still elicit the hypersensitive response in tobacco and incite disease in tomato.
  • the role of these glycine-rich hypersensitive response elicitors can vary widely among Gram-negative plant pathogens.
  • the present invention seeks to identify fragments of hypersensitive response elicitor proteins or polypeptides, which fragments do not elicit a hypersensitive response but are active when utilized in conjunction with plants.
  • the present invention is directed to isolated fragments of an Erwinia hypersensitive response elicitor protein or polypeptide which fragments do not elicit a hypersensitive response in plants but are otherwise active when utilized in conjunction with plants. Also disclosed are isolated DNA molecules which encode such fragments.
  • the fragments of hypersensitive response elicitors according to the present invention have the following activity when utilized in conjunction with plants: imparting disease resistance to plants, enhancing plant growth and/or controlling insects. This involves applying the fragments in a non-infectious form to plants or plant seeds under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds.
  • transgenic plants or plant seeds can be utilized.
  • a transgenic plant seed transformed with the DNA molecule encoding such a fragment can be provided and planted in soil. A plant is then propagated under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds.
  • Figure 1 shows truncated proteins of the hypersensitive response elicitor protein or polypeptide.
  • Figure 2 shows a list of synthesized oligonucleotide primers for construction of truncated harpin proteins.
  • N represents the N-terminus (5' region), and C represents the C-terminus (3' region).
  • the primers correspond to the indicated sequence identification numbers for the present application: Nl (SEQ. ID. No. 1), N76 (SEQ. ID. No. 2), N99 (SEQ. ID. No. 3), N105 (SEQ. ID. No. 4), Nl 10 (SEQ. ID. No. 5), N137 (SEQ. ID. No. 6), N150 (SEQ. ID. No. 7), N169 (SEQ. ID. No.
  • N210 SEQ. ID. No. 9
  • N267 SEQ. ID. No. 10
  • N343 SEQ. ID. No. 11
  • C75 SEQ. ID. No. 12
  • C104 SEQ. ID. No. 13
  • C168 SEQ. ID. No. 14
  • C180 SEQ. ID. No. 15
  • C204 SEQ. ID. No. 16
  • C209 SEQ. ID. No. 17
  • C266 SEQ. ID. No. 18
  • C342 SEQ. ID. No. 19
  • C403 SEQ. ID. No. 20
  • the present invention is directed to isolated fragments of a hypersensitive response elicitor protein or polypeptide where the fragments do not elicit a hypersensitive response but have other activity in plants. Also disclosed are DNA molecules encoding such fragments as well as expression systems, host cells, and plants containing such molecules. Uses of the fragments themselves and the DNA molecules encoding them are disclosed.
  • hypersensitive response elicitor polypeptides or proteins are derived from hypersensitive response elicitor polypeptides or proteins of a wide variety of fungal and bacterial pathogens. Such polypeptides or proteins are able to elicit local necrosis in plant tissue contacted by the elicitor.
  • Suitable bacterial sources of polypeptide or protein elicitors include Erwinia, Pseudomonas, and Xanthomonas species (e.g., the following bacteria: Erwinia amylovora, Erwinia chrysanthemi, Erwinia stewartii, Erwinia carotovora, Pseudomonas syringae, Pseudomonas solancearum, Xanthomonas campestris, and mixtures thereof).
  • An example of a fungal source of a hypersensitive response elicitor protein or polypeptide is Phytophthora.
  • Suitable species of Phytophthora include Phytophthora par asitica, Phytophthora cryptogea, Phytophthora cinnamomi, Phytophthora capsici, Phytophthora megasperma, and Phytophthora citrophthora.
  • the hypersensitive response elicitor polypeptide or protein from Erwinia chrysanthemi has an amino acid sequence corresponding to SEQ. ID. No. 21 as follows:
  • This hypersensitive response elicitor polypeptide or protein has a molecular weight of
  • the Erwinia chrysanthemi hypersensitive response elicitor polypeptide or protein is encoded by a DNA molecule having a nucleotide sequence corresponding to SEQ. ID. No. 22 as follows:
  • GAGCAGCACC ATCGATAAGT TGACCTCCGC GCTGACTTCG ATGATGTTTG GCGGCGCGCT 780 GGCGCAGGGG CTGGGCGCCA GCTCGAAGGG GCTGGGGATG AGCAATCAAC TGGGCCAGTC 840 TTTCGGCAAT GGCGCGCAGG GTGCGAGCAA CCTGCTATCC GTACCGAAAT CCGGCGGCGA 900 TGCGTTGTCA AAAATGTTTG ATAAAGCGCT GGACGATCTG CTGGGTCATG ACACCGTGAC 960 CAAGCTGACT AACCAGAGCA ACCAACTGGC TAATTCAATG CTGAACGCCA GCCAGATGAC 1020 CCAGGGTAAT ATGAATGCGT TCGGCAGCGG TGTGAACAAC GCACTGTCGT CCATTCGG 1080 CAACGGTCTC GGCCAGTCGA TGAGTGGCTT CTCTCAGCCT TCTCTGGGGG CAGGCGGCTT 1140 GCAGGGCCTG AGCG
  • the hypersensitive response elicitor polypeptide or protein derived from Erwinia amylovora has an amino acid sequence corresponding to SEQ. ID. No. 23 as follows:
  • This hypersensitive response elicitor polypeptide or protein has a molecular weight of about 39 kDa, has a pl of approximately 4.3, and is heat stable at 100°C for at least 10 minutes.
  • This hypersensitive response elicitor polypeptide or protein has substantially no cysteine.
  • the hypersensitive response elicitor polypeptide or protein derived from Erwinia amylovora is more fully described in Wei, Z.-M., R. J. Laby, C. H. Zumoff, D. W. Bauer, S.-Y. He, A. Collmer, and S. V.
  • CTCCTTGGCA ACGGGGGACT GGGAGGTGGT CAGGGCGGTA ATGCTGGCAC GGGTCTTGAC 780
  • CTGAAAAACG TCACCATGGG CGACGACGGG GCGGATGGTA TTCATCTTTA CGGTGATGCC 960
  • the isolated DNA molecule of the present invention encodes a hypersensitive response elicitor protein or polypeptide having an amino acid sequence of SEQ. ID. No. 26 as follows:
  • This protein or polypeptide is acidic, rich in glycine and serine, and lacks cysteine. It is also heat stable, protease sensitive, and suppressed by inhibitors of plant metabolism.
  • the protein or polypeptide of the present invention has a predicted molecular size of ca. 4.5 kDa.
  • Erwinia amylovora is disclosed in U.S. Patent Application Serial No. 09/120,663 which is hereby incorporated by reference.
  • the protein is encoded by a DNA molecule having a nucleic acid sequence of SEQ. ID. No. 27 as follows: ATGGAATTAA AATCACTGGG AACTGAACAC AAGGCGGCAG TACACACAGC GGCGCACAAC 60
  • AAAATGGCTC ACCCGGCTTC AGCCAACGCC GGCGATCGCC TGCAGCATTC ACCGCCGCAC 600
  • GGCAGTAAAC CAAATGGTGT CACTGCCCGT GTTTCTGCCG GGCTAAGTGC ATCGGCAAAC 4440
  • GCCAGCAATA ACCGCCCAAC CTTCCTCAAC GGGGTCGGCG CGGGTGCTAA CCTGACGGCT 4560
  • This DNA molecule is known as the dspE gene for Erwinia amylovora.
  • This isolated DNA molecule of the present invention encodes a protein or polypeptide which elicits a plant pathogen's hypersensitive response having an amino acid sequence of SEQ. ID. No. 28 as follows: Met Glu Leu Lys Ser Leu Gly Thr Glu His Lys Ala Ala Val His Thr 1 5 10 15
  • Asp Arg Val Glu lie Ala Gin Glu Asp Asp Asp Ser Glu Phe Gin Gin 225 230 235 240
  • Ser Gly Lys lie Ser Leu Gly Ser Gly Thr Gin Ser His Asn Lys Thr 405 410 415
  • Val Asp Gin Arg Gly Gin Val Ala lie Leu Thr Asp Thr Pro Gly Arg 515 520 525 His Lys Met Ser lie Met Pro Ser Leu Asp Ala Ser Pro Glu Ser His 530 535 540 lie Ser Leu Ser Leu His Phe Ala Asp Ala His Gin Gly Leu Leu His 545 550 555 560
  • Trp Asn Leu Thr Asp Ala Leu Val lie Asp Asn Gin Leu Gly Leu His 660 665 670
  • This protein or polypeptide is about 198 kDa and has a pl of 8.98.
  • the present invention relates to an isolated DNA molecule having a nucleotide sequence of SEQ. ID. No. 29 as follows:
  • This isolated DNA molecule of the present invention encodes a hypersensitive response elicitor protein or polypeptide having an amino acid sequence of SEQ. ID. No. 30 as follows:
  • This protein or polypeptide is about 16 kDa and has a pi of 4.45.
  • the hypersensitive response elicitor polypeptide or protein derived from Pseudomonas syringae has an amino acid sequence corresponding to SEQ. ID. No. 31 as follows:
  • This hypersensitive response elicitor polypeptide or protein has a molecular weight of 34-35 kDa. It is rich in glycine (about 13.5%) and lacks cysteine and tyrosine. Further information about the hypersensitive response elicitor derived from Pseudomonas syringae is found in He, S. Y., H. C. Huang, and A. Collmer, "Pseudomonas syringae pv. syringae Harpin Pss : a Protein that is Secreted via the Hrp Pathway and Elicits the Hypersensitive Response in Plants," Cell 73:1255-1266 (1993), which is hereby incorporated by reference.
  • the DNA molecule encoding the hypersensitive response elicitor from Pseudomonas syringae has a nucleotide sequence corresponding to SEQ. ID. No. 32 as follows:
  • ATGCAGAGTC TCAGTCTTAA CAGCAGCTCG CTGCAAACCC CGGCAATGGC CCTTGTCCTG 60
  • Pseudomonas syringae is disclosed in U.S. Patent Application Serial No. 09/120,817, which is hereby incorporated by reference.
  • the protein has a nucleotide sequence of SEQ. ID. No. 33 as follows:
  • This DNA molecule is known as the dspE gene for Pseudomonas syringae.
  • This isolated DNA molecule of the present invention encodes a protein or polypeptide which elicits a plant pathogen's hypersensitive response having an amino acid sequence of SEQ. ID. No. 34 as follows:
  • This protein or polypeptide is about 42.9 kDa.
  • the hypersensitive response elicitor polypeptide or protein derived from Pseudomonas solanacearum has an amino acid sequence corresponding to SEQ. ID. No. 35 as follows:
  • the hypersensitive response elicitor polypeptide or protein from Xanthomonas campestris pv. glycines has an amino acid sequence corresponding to SEQ. ID. No. 37 as follows:
  • This sequence is an amino terminal sequence having only 26 residues from the hypersensitive response elicitor polypeptide or protein of Xanthomonas campestris pv. glycines. It matches with fimbrial subunit proteins determined in other Xanthomonas campestris pathovars.
  • the hypersensitive response elicitor polypeptide or protein from Xanthomonas campestris pv. pelargonii is heat stable, protease sensitive, and has a molecular weight of 20 kDa. It includes an amino acid sequence corresponding to SEQ. ID. No. 38 as follows:
  • hypersensitive response elicitor protein or polypeptide of Erwinia stewartii is set forth in Ahmad et al., "Harpin is Not Necessary for the Pathogenicity of Erwinia stewartii on Maize," 8th Int'l. Cong. Molec. Plant-Microbe Interact.. July 14-19, 1996 and Ahmad, et al, "Harpin is Not Necessary for the Pathogenicity of Erwinia stewartii on Maize," Ann. Mtg. Am. Phytopath. Soc. July 27-31, 1996, which are hereby incorporated by reference.
  • Phytophthora capsici, Phytophthora megasperma, and Phytophora citrophthora are described in Kaman, et al., "Extracellular Protein Elicitors from Phytophthora: Most Specificity and Induction of Resistance to Bacterial and Fungal Phytopathogens," Molec. Plant-Microbe Interact. 6(l):15-25 (1993), Ricci et al., "Structure and Activity of Proteins from Pathogenic Fungi Phytophthora Eliciting Necrosis and
  • elicitors are exemplary.
  • Other elicitors can be identified by growing fungi or bacteria that elicit a hypersensitive response under conditions which genes encoding an elicitor are expressed.
  • Cell-free preparations from culture supernatants can be tested for elicitor activity (i.e. local necrosis) by using them to infiltrate appropriate plant tissues.
  • Fragments of the above hypersensitive response elicitor polypeptides or proteins as well as fragments of full length elicitors from other pathogens are encompassed by the present invention.
  • Suitable fragments can be produced by several means.
  • subclones of the gene encoding a known elicitor protein are produced by conventional molecular genetic manipulation by subcloning gene fragments.
  • the subclones then are expressed in vitro or in vivo in bacterial cells to yield a smaller protein or peptide that can be tested for elicitor activity according to the procedure described below.
  • fragments of an elicitor protein can be produced by digestion of a full-length elicitor protein with proteolytic enzymes like chymotrypsin or Staphylococcus proteinase A, or trypsin. Different proteolytic enzymes are likely to cleave elicitor proteins at different sites based on the amino acid sequence of the elicitor protein. Some of the fragments that result from proteolysis may be active elicitors of resistance.
  • fragments of the elicitor protein gene may be synthesized by using the PCR technique together with specific sets of primers chosen to represent particular portions of the protein. These then would be cloned into an appropriate vector for expression of a truncated peptide or protein.
  • Chemical synthesis can also be used to make suitable fragments. Such a synthesis is carried out using known amino acid sequences for the elicitor being produced. Alternatively, subjecting a full length elicitor to high temperatures and pressures will produce fragments. These fragments can then be separated by conventional procedures (e.g., chromatography, SDS-PAGE).
  • Suitable fragments of a hypersensitive response elicitor which do not elicit a hypersensitive response include fragments of the Erwinia amylovora hypersensitive response elicitor.
  • Suitable fragments include a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, or an internal fragment of the amino acid sequence of SEQ. ID. No. 23.
  • the C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23 can span the following amino acids of SEQ. ID. No. 23: 169 and 403, 210 and 403, 267 and 403, or 343 and 403.
  • the internal fragment of the amino acid sequence of SEQ. ID. No. 23 can span the following amino acids of SEQ. ID. No. 23: 105 and 179, 137 and 166, 121 and 150, or 137 and 156.
  • Other suitable fragments can be identified in accordance with the present invention.
  • a useful fragment of a hypersensitive response elicitor which fragment does not itself elicit a hypersensitive response is the protein fragment containing amino acids 190 to 294 of the amino acid sequence (SEQ. ID. No. 31) for the Pseudomonas syringae pv. syringae hypersensitive response elicitor. This fragment is useful in imparting disease resistance and enhancing plant growth.
  • a useful fragment of a hypersensitive response elicitor is the peptide having an amino acid sequence corresponding to SEQ. ID. No. 39. This peptide is derived from the hypersensitive response eliciting glycoprotein of Phytophthora megasperma and enhances plant growth.
  • Variants may be made by, for example, the deletion or addition of amino acids that have minimal influence on the properties, secondary structure, and hydropathic nature of the polypeptide.
  • a polypeptide may be conjugated to a signal (or leader) sequence at the N-terminal end of the protein which co- translationally or post-translationally directs transfer of the protein.
  • the polypeptide may also be conjugated to a linker or other sequence for ease of synthesis, purification, or identification of the polypeptide.
  • the fragment of the present invention is preferably in isolated form (i.e. separated from its host organism) and more preferably produced in purified form (preferably at least about 60%, more preferably 80%, pure) by conventional techniques.
  • the fragment of the present invention is produced but not secreted into the growth medium of recombinant host cells.
  • the protein or polypeptide of the present invention is secreted into growth medium.
  • the host cell e.g., E. coli
  • the homogenate is centrifuged to remove bacterial debris.
  • the supernatant is then subjected to heat treatment and the fragment is separated by centrifugation.
  • the supernatant fraction containing the fragment is subjected to gel filtration in an appropriately sized dextran or polyacrylamide column to separate the fragment. If necessary, the protein fraction may be further purified by ion exchange or HPLC.
  • the DNA molecule encoding the fragment of the hypersensitive response elicitor polypeptide or protein can be incorporated in cells using conventional recombinant DNA technology. Generally, this involves inserting the DNA molecule into an expression system to which the DNA molecule is heterologous (i.e. not normally present). The heterologous DNA molecule is inserted into the expression system or vector in proper sense orientation and correct reading frame. The vector contains the necessary elements for the transcription and translation of the inserted protein-coding sequences.
  • Recombinant genes may also be introduced into viruses, such as vaccina virus.
  • Recombinant viruses can be generated by transfection of plasmids into cells infected with virus.
  • Suitable vectors include, but are not limited to, the following viral vectors such as lambda vector system gtl 1, gt WES.tB, Charon 4, and plasmid vectors such as pBR322, pBR325, pACYC177, pACYC1084, pUC8, pUC9, pUC18, pUC19, pLG339, pR290, pKC37, pKClOl, SV 40, pBluescript II SK +/- or KS +/- (see "Stratagene Cloning Systems” Catalog (1993) from Stratagene, La Jolla, Calif, which is hereby incorporated by reference), pQE, pIH821, pGEX, pET series (see F.W.
  • host- vector systems may be utilized to express the protein- encoding sequence(s). Primarily, the vector system must be compatible with the host cell used.
  • Host- vector systems include but are not limited to the following: bacteria transformed with bacteriophage DNA, plasmid DNA, or cosmid DNA; microorganisms such as yeast containing yeast vectors; mammalian cell systems infected with virus (e.g., vaccinia virus, adenovirus, etc.); insect cell systems infected with virus (e.g., baculovirus); and plant cells infected by bacteria.
  • the expression elements of these vectors vary in their strength and specificities. Depending upon the host- vector system utilized, any one of a number of suitable transcription and translation elements can be used.
  • eucaryotic promotors differ from those of procaryotic promotors. Furthermore, eucaryotic promotors and accompanying genetic signals may not be recognized in or may not function in a procaryotic system, and, further, procaryotic promotors are not recognized and do not function in eucaryotic cells.
  • SD Shine-Dalgarno
  • Promotors vary in their "strength" (i.e. their ability to promote transcription). For the purposes of expressing a cloned gene, it is desirable to use strong promotors in order to obtain a high level of transcription and, hence, expression of the gene. Depending upon the host cell system utilized, any one of a number of suitable promotors may be used. For instance, when cloning in E.
  • promotors such as the T7 phage promotor, lac promotor, trp promotor, recA promotor, ribosomal RNA promotor, the P R and P L promotors of coliphage lambda and others, including but not limited, to lacOY5, ompF, bla, Ipp, and the like, may be used to direct high levels of transcription of adjacent DNA segments.
  • a hybrid trp-lac ⁇ JY5 (tac) promotor or other E. coli promotors produced by recombinant DNA or other synthetic DNA techniques may be used to provide for transcription of the inserted gene.
  • Bacterial host cell strains and expression vectors may be chosen which inhibit the action of the promotor unless specifically induced. In certain operations, the addition of specific inducers is necessary for efficient transcription of the inserted DNA.
  • the lac operon is induced by the addition of lactose or IPTG (isopropylthio-beta-D-galactoside).
  • IPTG isopropylthio-beta-D-galactoside
  • Specific initiation signals are also required for efficient gene transcription and translation in procaryotic cells. These transcription and translation initiation signals may vary in "strength” as measured by the quantity of gene specific messenger RNA and protein synthesized, respectively.
  • the DNA expression vector which contains a promotor, may also contain any combination of various "strong" transcription and/or translation initiation signals. For instance, efficient translation in E. coli requires an SD sequence about 7-9 bases 5' to the initiation codon ("ATG”) to provide a ribosome binding site. Thus, any SD-ATG combination that can be utilized by host cell ribosomes may be employed. Such combinations include but are not limited to the SD-ATG combination from the cro gene or the N gene of coliphage lambda, or from the E.
  • any SD- ATG combination produced by recombinant D ⁇ A or other techniques involving incorporation of synthetic nucleotides may be used.
  • the present invention further relates to methods of imparting disease resistance to plants, enhancing plant growth, and/or effecting insect control for plants. These methods involve applying the fragment of a hypersensitive response elicitor polypeptide or protein which does not elicit a hypersensitive response in a non- infectious form to all or part of a plant or a plant seed under conditions effective for the fragment to impart disease resistance, enhance growth, and/or control insects. Alternatively, these fragments of a hypersensitive response elicitor protein or polypeptide can be applied to plants such that seeds recovered from such plants themselves are able to impart disease resistance in plants, to enhance plant growth, and/or to effect insect control.
  • transgenic plants or plant seeds can be utilized.
  • a transgenic plant seed transformed with a DNA molecule encoding a fragment of a hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response can be provided and planted in soil.
  • a plant is then propagated from the planted seed under conditions effective to permit that DNA molecule to impart disease resistance to plants, to enhance plant growth, and/or to control insects.
  • the embodiment of the present invention where the hypersensitive response elicitor polypeptide or protein is applied to the plant or plant seed can be carried out in a number of ways, including: 1) application of an isolated fragment or 2) application of bacteria which do not cause disease and are transformed with a gene encoding the fragment.
  • the fragment can be applied to plants or plant seeds by applying bacteria containing the DNA molecule encoding the fragment of the hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response.
  • bacteria must be capable of secreting or exporting the fragment so that the fragment can contact plant or plant seed cells.
  • the fragment is produced by the bacteria inplanta or on seeds or just prior to introduction of the bacteria to the plants or plant seeds.
  • the methods of the present invention can be utilized to treat a wide variety of plants or their seeds to impart disease resistance, enhance growth, and/or control insects. Suitable plants include dicots and monocots.
  • useful crop plants can include: alfalfa, rice, wheat, barley, rye, cotton, sunflower, peanut, corn, potato, sweet potato, bean, pea, chicory, lettuce, endive, cabbage, brussel sprout, beet, parsnip, turnip, cauliflower, broccoli, radish, spinach, onion, garlic, eggplant, pepper, celery, carrot, squash, pumpkin, zucchini, cucumber, apple, pear, melon, citrus, strawberry, grape, raspberry, pineapple, soybean, tobacco, tomato, sorghum, and sugarcane.
  • suitable ornamental plants are: Arabidopsis thaliana, Saintpaulia, petunia, pelargonium, poinsettia, chrysanthemum, carnation, and zinnia.
  • the fragments of the hypersensitive response elicitor protein or polypeptide of the present invention in imparting disease resistance, absolute immunity against infection may not be conferred, but the severity of the disease is reduced and symptom development is delayed. Lesion number, lesion size, and extent of sporulation of fungal pathogens are all decreased.
  • This method of imparting disease resistance has the potential for treating previously untreatable diseases, treating diseases systemically which might not be treated separately due to cost, and avoiding the use of infectious agents or environmentally harmful materials.
  • the method of imparting pathogen resistance to plants in accordance with the present invention is useful in imparting resistance to a wide variety of pathogens including viruses, bacteria, and fungi.
  • Resistance, ter alia, to the following viruses can be achieved by the method of the present invention: Tobacco mosaic virus and Tomato mosaic virus. Resistance, inter alia, to the following bacteria can also be imparted to plants in accordance with present invention: Pseudomonas solanacearum, Pseudomonas syringae pv. tabaci, and Xanthamonas campestris pv. pelargonii. Plants can be made resistant, inter alia, to the following fungi by use of the method of the present invention: Fusarium oxysporum and Phytophthora infestans.
  • plant growth enhancement or promotion can be achieved. This can occur as early as when plant growth begins from seeds or later in the life of a plant.
  • plant growth according to the present invention encompasses greater yield, increased quantity of seeds produced, increased percentage of seeds germinated, increased plant size, greater biomass, more and bigger fruit, earlier fruit coloration, and earlier fruit and plant maturation.
  • the present invention provides significant economic benefit to growers. For example, early germination and early maturation permit crops to be grown in areas where short growing seasons would otherwise preclude their growth in that locale. Increased percentage of seed germination results in improved crop stands and more efficient seed use. Greater yield, increased size, and enhanced biomass production allow greater revenue generation from a given plot of land.
  • insect control encompasses preventing insects from contacting plants to which the hypersensitive response elicitor has been applied, preventing direct insect damage to plants by feeding injury, causing insects to depart from such plants, killing insects proximate to such plants, interfering with insect larval feeding on such plants, preventing insects from colonizing host plants, preventing colonizing insects from releasing phytotoxins, etc.
  • the present invention also prevents subsequent disease damage to plants resulting from insect infection.
  • the present invention is effective against a wide variety of insects.
  • European corn borer is a major pest of corn (dent and sweet corn) but also feeds on over 200 plant species including green, wax, and lima beans and edible soybeans, peppers, potato, and tomato plus many weed species.
  • Additional insect larval feeding pests which damage a wide variety of vegetable crops include the following: beet army worm, cabbage looper, corn ear worm, fall army worm, diamondback moth, cabbage root maggot, onion maggot, seed corn maggot, pickleworm (melonworm), pepper maggot, tomato pinworm, and maggots.
  • the method of the present invention involving application of the fragment of a hypersensitive response elicitor polypeptide or protein, which fragment does not elicit a hypersensitive response can be carried out through a variety of procedures when all or part of the plant is treated, including leaves, stems, roots, propagules (e.g., cuttings), etc. This may (but need not) involve infiltration of the fragment of the hypersensitive response elicitor polypeptide or protein into the plant. Suitable application methods include high or low pressure spraying, injection, and leaf abrasion proximate to when elicitor application takes place.
  • the fragment of the hypersensitive response elicitor protein or polypeptide in accordance with present invention, can be applied by low or high pressure spraying, coating, immersion, or injection. Other suitable application procedures can be envisioned by those skilled in the art provided they are able to effect contact of the fragment with cells of the plant or plant seed.
  • the seeds can be planted in natural or artificial soil and cultivated using conventional procedures to produce plants.
  • the plants may be treated with one or more applications of the fragment of the hypersensitive response elicitor protein or polypeptide or whole elicitors to impart disease resistance to plants, to enhance plant growth, and/or to control insects on the plants.
  • the fragment of the hypersensitive response elicitor polypeptide or protein in accordance with the present invention, can be applied to plants or plant seeds alone or in a mixture with other materials. Alternatively, the fragment can be applied separately to plants with other materials being applied at different times.
  • a composition suitable for treating plants or plant seeds in accordance with the application embodiment of the present invention contains a fragment of a hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response in a carrier. Suitable carriers include water, aqueous solutions, slurries, or dry powders. In this embodiment, the composition contains greater than 500 nM of the fragment.
  • this composition may contain additional additives including fertilizer, insecticide, fungicide, nematacide, and mixtures thereof.
  • Suitable fertilizers include (NH 4 ) 2 NO 3 .
  • An example of a suitable insecticide is Malathion.
  • Useful fungicides include Captan.
  • Other suitable additives include buffering agents, wetting agents, coating agents, and abrading agents. These materials can be used to facilitate the process of the present invention.
  • the hypersensitive response eliciting fragment can be applied to plant seeds with other conventional seed formulation and treatment materials, including clays and polysaccharides.
  • a fragment of a hypersensitive response elicitor need not be applied topically to the plants or seeds.
  • transgenic plants transformed with a DNA molecule encoding such a fragment are produced according to procedures well known in the art
  • the vector described above can be microinjected directly into plant cells by use of micropipettes to transfer mechanically the recombinant DNA. Crossway, Mol. Gen. Genetics. 202:179-85 (1985), which is hereby incorporated by reference.
  • the genetic material may also be transferred into the plant cell using polyethylene glycol. Krens, et al., Nature. 296:72-74 (1982), which is hereby incorporated by reference.
  • particle bombardment also known as biolistic transformation
  • this procedure involves propelling inert or biologically active particles at the cells under conditions effective to penetrate the outer surface of the cell and to be incorporated within the interior thereof.
  • the vector can be introduced into the cell by coating the particles with the vector containing the heterologous DNA.
  • the target cell can be surrounded by the vector so that the vector is carried into the cell by the wake of the particle.
  • Biologically active particles e.g., dried bacterial cells containing the vector and heterologous DNA
  • the DNA molecule may also be introduced into the plant cells by electroporation. Fromm et al., Proc. Natl. Acad. Sci. USA. 82:5824 (1985), which is hereby incorporated by reference. In this technique, plant protoplasts are electroporated in the presence of plasmids containing the expression cassette. Electrical impulses of high field strength reversibly permeabilize biomembranes allowing the introduction of the plasmids. Electroporated plant protoplasts reform the cell wall, divide, and regenerate.
  • Another method of introducing the DNA molecule into plant cells is to infect a plant cell with Agrobacterium tumefaciens or A. rhizogenes previously transformed with the gene. Under appropriate conditions known in the art, the transformed plant cells are grown to form shoots or roots, and develop further into plants. Generally, this procedure involves inoculating the plant tissue with a suspension of bacteria and incubating the tissue for 48 to 72 hours on regeneration medium without antibiotics at 25 -28 °C .
  • Agrobacterium is a representative genus of the Gram-negative family Rhizobiaceae. Its species are responsible for crown gall (A. tumefaciens) and hairy root disease (A. rhizogenes). The plant cells in crown gall tumors and hairy roots are induced to produce amino acid derivatives known as opines, which are catabolized only by the bacteria.
  • the bacterial genes responsible for expression of opines are a convenient source of control elements for chimeric expression cassettes. In addition, assaying for the presence of opines can be used to identify transformed tissue.
  • Heterologous genetic sequences can be introduced into appropriate plant cells, by means of the Ti plasmid of A. tumefaciens or the Ri plasmid of A. rhizogenes.
  • the Ti or Ri plasmid is transmitted to plant cells on infection by Agrobacterium and is stably integrated into the plant genome. J. Schell, Science. 237:1176-83 (1987), which is hereby incorporated by reference.
  • Efficient regeneration will depend on the medium, on the genotype, and on the history of the culture. If these three variables are controlled, then regeneration is usually reproducible and repeatable.
  • the expression cassette After the expression cassette is stably incorporated in transgenic plants, it can be transferred to other plants by sexual crossing. Any of a number of standard breeding techniques can be used, depending upon the species to be crossed.
  • transgenic plants of this type are produced, the plants themselves can be cultivated in accordance with conventional procedure with the presence of the gene encoding the fragment of the hypersensitive response elicitor resulting in disease resistance, enhanced plant growth, and/or control of insects on the plant.
  • transgenic seeds or propagules are recovered from the transgenic plants.
  • the seeds can then be planted in the soil and cultivated using conventional procedures to produce transgenic plants.
  • the transgenic plants are propagated from the planted transgenic seeds under conditions effective to impart disease resistance to plants, to enhance plant growth, and/or to control insects. While not wishing to be bound by theory, such disease resistance, growth enhancement, and/or insect control may be RNA mediated or may result from expression of the polypeptide or protein fragment.
  • transgenic plants and plant seeds When transgenic plants and plant seeds are used in accordance with the present invention, they additionally can be treated with the same materials as are used to treat the plants and seeds to which a fragment of a hypersensitive response elicitor in accordance with the present invention is applied. These other materials, including a fragment of a hypersensitive response elicitor in accordance with the present invention, can be applied to the transgenic plants and plant seeds by the above-noted procedures, including high or low pressure spraying, injection, coating, and immersion. Similarly, after plants have been propagated from the transgenic plant seeds, the plants may be treated with one or more applications of the fragment of a hypersensitive response elicitor in accordance with the present invention to impart disease resistance, enhance growth, and/or control insects. Such plants may also be treated with conventional plant treatment agents (e.g., insecticides, fertilizers, etc.).
  • conventional plant treatment agents e.g., insecticides, fertilizers, etc.
  • Escherichia coli strains used in the following examples include DH5 ⁇ and BL21(DE3) purchased from Gibco BRL (Grand Island, NY.) and Stratagene (La Jolla, CA), respectively.
  • the pET28(b) vector was purchased from Novagen (Madison, WI).
  • Eco DH5 ⁇ /2139 contained the complete hrpN gene.
  • the 2139 construct was produced by D. Bauer at Cornell University.
  • the hrpN gene was cleaved from the 2139 plasmid by restriction enzyme digestion with Hindlll, then purified from an agarose gel to serve as the DNA template for PCR synthesis of truncated hrpN clones. These clones were subsequently inserted into the (His) 6 vector pET28(b) which contained a Kan r gene for selection of transformants.
  • Restriction enzymes were obtained from Boehringer Mannheim (Indianapolis, IN) or Gibco BRL. T4 DNA ligase, Calf Intestinal Alkaline Phosphatase (CIAP), and PCR SupermixTM were obtained from Gibco BRL.
  • the QIAprep Spin Miniprep Kit, the Qiagen Plasmid Mini Kit, and the QIAquick PCR Purification Kit were purchased from Qiagen (Hilden, Germany).
  • the PCR primers were synthesized by Lofstrand Labs Limited (Gaithersburg, MD).
  • the oligopeptides were synthesized by Bio-Synthesis, Inc. (Lewisville, TX). All DNA manipulations such as plasmid isolation, restriction enzyme digestion, DNA ligation, and PCR were performed according to standard techniques (Sambrook, et al., Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989)) or protocols provided by the manufacturer.
  • Example 3 Fragmentation of hrpN Gene
  • the full length hrpN gene was used as the DNA template and 3' and 5' primers were designed for each truncated clone (Fig. 2).
  • the 3' primers contained an Ndel enzyme cutting site which contained the start codon ATG (methionine) and the 5' primers contained the stop codon TAA and a Hindlll enzyme cutting site for ligation into the pET28(b) vector.
  • PCR was carried out in 0.5 ml tubes in a GeneAmpTM 9700 (Perkin-Elmer, Foster City, CA).
  • Amplified DNA was purified with the QIAquick PCR purification kit, digested with Nde I and Hind III at 37°C for 5 hours, extracted once with phenol:chloroform:isoamylalcohol (25:25:1) and precipitated with ethanol.
  • 5 ⁇ g of pET28(b) vector DNA were digested with 15 units of Nde I and 20 units of Hind III at 37°C for 3 hours followed with CIAP treatment to reduce the background resulting from incomplete single enzyme digestion.
  • Digested vector DNA was purified with the QIAquick PCR purification kit and directly used for ligation. Ligation was carried out at 14-16°C for 5-12 hours in a 15 ⁇ l mixture containing ca.
  • Plasmid DNA was prepared from 2 ml of culture with the QIAprep Miniprep kit (QIAGEN, Hilden, Germany). The DNA from the transformed cells was analyzed by restriction enzyme digestion or partial sequencing to verify the success of the transformations. Plasmids with the desired DNA sequence were transferred into the BL21 strain using the standard chemical transformation method as indicated above. A clone containing the full length harpin protein in the pET28(b) vector was generated as a positive control, and a clone with only the pET28(b) vector was generated as a negative control.
  • Escherichia coli BL21(DE3) strains containing the hrpN clones were grown in Luria broth medium (5 g/L Difco Yeast extract, 10 g/L Difco Tryptone, 5 g/L NaCl, and 1 mM NaOH) containing 30 ⁇ g/ml of kanamycin at 37°C overnight.
  • the bacteria were then inoculated into 100 volumes of the same medium and grown at 37°C to an OD 6 20 of 0.6-0.8.
  • the bacteria were then inoculated into 250 volumes of the same medium and grown at 37°C to an OD 6 2o of ca. 0.3 or 0.6-0.8.
  • One milli molar IPTG was then added and the cultures grown at 19°C overnight (ca.
  • a 50 ml culture of a hrpN clone was grown as above to induce expression of the truncated protein.
  • 1.5 ml of the cell suspension were centrifuged at 14,000 rpm for 5 minutes, re-suspended in urea lysis buffer (8 M urea, 0.1 M Na 2 HPO 4 , and 0.01 M Tris - pH 8.0), incubated at room temperature for 10 minutes, then centrifuged again at 14,000 rpm for 10 minutes, and the supernatant saved.
  • Tobacco (Nicotiana tabacum v. Xanthi) seedlings were grown in an environmental chamber at 20-25°C with a photoperiod of 12-h light /12-h dark and ca. 40%) RH. Cell lysate was used for the initial HR assays (in order to screen the truncated proteins for HR activity) as the small scale urea purification yielded very little protein which was denatured due to the purification process.
  • the column was centrifuged at 1100 rpm for one minute to remove any residual wash buffer and then the protein was eluted from the resin with 4 ml of imidazole elution buffer (1 M imidazole, 0.5 M NaCl, and 20 mM Tris) by incubating the column with the elution buffer for ten minutes at room temperature and then centrifuging the column at 1100 ⁇ m for one minute.
  • the eluate was run on a 4-20%, a 16%, or a 10-20%) Tris-Glycine pre-cast gel depending upon the size of the truncated protein to verify the expression.
  • the concentration of the proteins was determined by comparison of the protein bands with a standard protein in the Mark 12 molecular weight marker.
  • the procedure was the same as the large scale native purification except that urea lysis buffer, washing buffer, and elution buffer were used, and the cells were not sonicated as in the native purification.
  • the protein was renatured by dialyzing against lower and lower concentrations of urea over an eight hour period, then dialyzing overnight against 10 mM Tris/20 mM NaCl. The renaturing process caused the N-terminal proteins to precipitate.
  • the precipitated 1- 168 protein was solubilized by the addition of 100 mM Tris-HCl at pH 10.4 then heating the protein at 30°C for ca. one hour. The concentration of the protein was determined by comparison of the protein bands with a standard protein in the Mark 12 molecular weight marker.
  • fragment proteins were expressed at varying levels except for three small fragments (amino acids 169-209, 150-209, and 150-180). Fragments 210-403 and 267-403 were expressed very well, yielding a high concentration of protein from a small scale purification, resulting in a substantial protein band on SDS gel electrophoresis. Other fragments (such as a.a. 1-168 and 1-104) produced much less protein, resulting in faint protein bands upon electrophoresis. It was difficult to determine whether fragment 343-403, the smallest C-terminal protein, was expressed, as there were several background proteins apparent on the gel, in addition to the suspected 343-403 protein. The positive and negative control proteins, consisting of the full length hypersensitive response elicitor protein and only background proteins, respectively, were tested for expression and HR activity as well.
  • the truncated proteins deemed to be the most important in characterizing the hypersensitive response elicitor were chosen for large scale expression.
  • the positive control full length hypersensitive response elicitor
  • All of the C-terminal proteins were expressed at relatively high levels from 2-5 mg/ml, except for fragment 343-403 as discussed earlier.
  • the N-terminal fragments were expressed very well also; however, during the purification process, the protein precipitated and very little was resolubilized.
  • the concentrations in Table 3 reflect only the solubilized protein.
  • the internal fragments were expressed in the range of 2-3.6 mg/ml. It was extremely difficult to determine the concentration of fragment 105-168 (it was suspected that the concentration was much higher than indicated), as the protein bands on the SDS gel were large, but poorly stained.
  • the negative control contained several background proteins as expected, but no obviously induced dominant protein.
  • the other potential HR domain is thought to be located in the N-terminus of the protein from a.a. 1-104 (possibly a.a. 1-75) (SEQ. ID. No. 23). It was difficult to confirm or narrow down the N-terminus HR domain due to the difficulties encountered in purifying these fragment proteins.
  • the N-terminus fragment proteins had to be purified with urea as no protein was recovered when the native purification process was used.
  • oligopeptides were synthesized with 30 a.a. to narrow down the functional region of the internal HR domain.
  • the oligopeptides were synthesized within the range of a.a. 121-179 (SEQ. ID. No. 23). However, these oligos did not elicit HR. It was not expected that there would be an HR from oligos 137-166, 121- 150, and 137-156 (SEQ. ID. No. 23) as these fragments did not contain the imperative amino acids 168 and 169 (SEQ. ID. No. 23). It was expected that the oligo 150-179 (SEQ. ID. No.).
  • the C-terminal fragments enhanced the growth of tomato by 9% to 21%.
  • the N-terminal fragments enhanced the growth of tomato by 4% to 13%).
  • the internal fragments enhanced growth by 9% to 20%>.
  • the 76-209 fragment enhanced growth by 18% at a concentration of 60 ⁇ g/ml, but not at the typical 20 ⁇ g/ml. This was attributed to the inaccuracy of the quantification process (Table 4).
  • the oligopeptides enhanced growth from 7.4% to 17.3% (Table 5).
  • Example 14 Induction of Systemic Acquired Resistance (SAR) All of the hypersensitive response elicitor fragments tested to date appear to have 60% efficacy or greater, except for the oligopeptide 137-156 (Tables 5 and 6). Table 6
  • the hypersensitive response activity is separable from the plant growth enhancement activity.
  • the C-terminal fragments clearly enhance the growth of tomato by ca. 20% at a concentration of only 20 ⁇ g/ml, but these same fragments were not able to elicit HR in tobacco, even at higher concentrations than 200 ⁇ g/ml.
  • the SAR activity also appears to be separable from the HR activity. This finding is highly significant for future work on transgenic applications of the hypersensitive response elicitor technology.
  • the fragments that induce PGE and/or SAR but do not elicit HR will be imperative for this technology, as constitutive expression of even low levels of an HR elicitor might kill a plant.
  • hrpZ The following segments of hrpZ, the gene encoding the hypersensitive response elicitor from Pseudomonas syringae pv. syringae, were amplified by PCR using Pfu Turbo (Stratagene): Regions coding for amino acids 152-190, aa 152-294, aa 190-294, aa 301-341, and full length HrpZ (aa 1-341). The DNA fragments were cloned into pCAL-n (Stratagene) to create C-terminal fusion proteins to the calmodulin-binding peptide. pCAL-n was chosen, because the fusion protein could be easily and gently purified on calmodulin resin.
  • the DNA was transformed into E coli DH5oc, and the correct clones were identified. The clones were then transferred to E. coli BLR D ⁇ 3 for protein expression. The bacteria were grown in Terrific Broth to an OD 620 of 0.8-1.0. Protein expression was then induced with IPTG and the bacteria were incubated for an additional 3 h. All of the HrpZ fragments were able to be expressed this way. Amino acid fragments 152-294 and 190-294 were chosen for further analysis and characterization. It was expected that the fragment 152-294 contained a domain that elicited the HR, while fragment 190-294 contained no domain that elicited the HR.
  • the cultures were spun down, and the bacteria resuspended in 40 ml of 10 mM Tris pH 8.0. Twenty ⁇ l of antifoam and 40 ⁇ l of 200 mM PMSF were added, and the bacteria was sonicated to break open the cells. The bacterial debris was removed by centrifugation, and the supernatant was placed in a boiling water bath for 10 min. The precipitate was removed by centrifugation and the supernatant, a crude protein preparation, was retained for tests.
  • the fragment preparations were then tested for inducing resistance to TMV and for growth enhancement. Due to the difference in concentration of the HrpZ fragments, the 152-294 preparation was diluted 40-fold and the 190-294 preparation was diluted 8-fold. The results showed that the 190-294 aa fragment reduced the number of TMV lesions by 85% in comparison to buffer controls (Table 8). In contrast, the 152-294 aa fragment reduced the number of TMV lesions by only 55%. As also shown in Table 8, plants treated with the 152-294 aa fragment grew 4.64%o more than buffer treated plants, while plants treated with the 190-294 aa fragment grew 2.62% more than the buffer treated plants.
  • Phytophthora megasperma Several years ago, a 42 kDa glycoprotein elicitor was purified from the fungal culture filtrate of Phytophthora megasperma (Parker et al., "An Extracellular Glycoprotein from Phytophthora megasperma f.sp. glycinea Elicits Phytoalexin Synthesis in Cultured Parsley Cells and Protoplasts," Mol. Plant Microbe Interact. 4:19-27 (1991), which is hereby incorporated by reference).
  • an oligopeptide of 13 amino acid was identified within the 42 kDa glycoprotein.
  • the 13 amino acids peptide appeared to have similar biological activity as that of the full length glycoprotein (42 kDa). It is sufficient to elicit a complex defense response in parsley cells including H+/Ca2+ influxes, K+/C1- effluxes, active oxygen production, SAR gene induction, and phytoalexin compound accumulation (Nurnberger et al., "High Affinity Binding of a Fungal Oligopeptide Elicitor to Parsley Plasma Membranes Triggers Multiple Defense Response," Cell 78:449-460 (1994), which is hereby incorporated by reference).
  • the synthesized sequence of the peptide is NH2-Val-Trp-Asn- Gln-Pro-Val-Arg-Gly-Phe-Lys-Val-Tyr-Glu-COOH (SEQ. ID. No. 39).
  • the synthesized peptide was resuspended in 10 ml of 5 mM potassium phosphate buffer and, then, diluted to 1 and 100 ng/ml with the same buffer. About 100 tomato seeds (variety, Marglobe) were submerged in 20 ml of peptide solution overnight. The soaked seeds were planted in an 8 inch pot with artificial soil. Seeds soaked in the buffer without the peptide were used as a control.

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Abstract

The present invention is directed to isolated active fragments of a hypersensitive response elicitor protein or polypeptide which fragment does not elicit a hypersensitive response in plants. Also disclosed are isolated DNA molecules which encode such fragments. Isolated fragments of hypersensitive response elicitor proteins or polypeptides in accordance with the present invention and the isolated DNA molecules that encode them have the following activities: imparting disease resistance to plants, enhancing plant growth, and/or controlling insects on plants. This can be achieved by applying the fragments of a hypersensitive response elicitor in a non-infectious form to plants or plant seeds under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds. Alternatively, transgenic plants or plant seeds transformed with a DNA molecule encoding the fragment can be provided and the transgenic plants or plants resulting from the transgenic plant seeds are grown under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds.

Description

HYPERSENSITIVE RESPONSE ELICITOR FRAGMENTS WHICH ARE ACTIVE BUT DO NOT ELICIT A HYPERSENSITIVE RESPONSE
This application claims benefit of U.S. Provisional Patent Application Serial No. 60/103,050, filed October 5, 1998.
FIELD OF THE INVENTION
The present invention relates to active fragments of a hypersensitive response elicitor which fragments do not elicit a hypersensitive response.
BACKGROUND OF THE INVENTION
Interactions between bacterial pathogens and their plant hosts generally fall into two categories: (1) compatible (pathogen-host), leading to intercellular bacterial growth, symptom development, and disease development in the host plant; and (2) incompatible (pathogen-nonhost), resulting in the hypersensitive response, a particular type of incompatible interaction occurring, without progressive disease symptoms. During compatible interactions on host plants, bacterial populations increase dramatically and progressive symptoms occur. During incompatible interactions, bacterial populations do not increase, and progressive symptoms do not occur.
The hypersensitive response is a rapid, localized necrosis that is associated with the active defense of plants against many pathogens (Kiraly, Z., "Defenses Triggered by the Invader: Hypersensitivity," pages 201-224 in: Plant Disease: An Advanced Treatise. Vol. 5, J.G. Horsfall and E.B. Cowling, ed. Academic Press New York (1980); Klement, Z., "Hypersensitivity," pages 149-177 in: Phytopatho enie Prokaryotes. Vol. 2, M.S. Mount and G.H. Lacy, ed. Academic Press, New York (1982)). The hypersensitive response elicited by bacteria is readily observed as a tissue collapse if high concentrations (> 107 cells/ml) of a limited host-range pathogen like Pseudomonas syringae or Erwinia amylovora are infiltrated into the leaves of nonhost plants (necrosis occurs only in isolated plant cells at lower levels of inoculum) (Klement, Z., "Rapid Detection of Pathogenicity of Phytopathogenic Pseudomonads," Nature 199:299-300; Klement, et al., "Hypersensitive Reaction Induced by Phytopathogenic Bacteria in the Tobacco Leaf," Phytopathology 54:474-477 (1963); Turner, et al, "The Quantitative Relation Between Plant and Bacterial Cells Involved in the Hypersensitive Reaction," Phytopathology 64:885-890 (1974); Klement, Z., "Hypersensitivity," pages 149-177 in Phytopathogenic Prokaryotes. Vol. 2., M.S. Mount and G.H. Lacy, ed. Academic Press, New York (1982)). The capacities to elicit the hypersensitive response in a nonhost and be pathogenic in a host appear linked. As noted by Klement, Z., "Hypersensitivity," pages 149-177 in Phytopathogenic Prokaryotes. Vol. 2., M.S. Mount and G.H. Lacy, ed. Academic Press, New York, these pathogens also cause physiologically similar, albeit delayed, necroses in their interactions with compatible hosts. Furthermore, the ability to produce the hypersensitive response or pathogenesis is dependent on a common set of genes, denoted hrp (Lindgren, P.B., et al, "Gene Cluster of Pseudomonas syringae pv. 'phaseolicola' Controls Pathogenicity of Bean Plants and Hypersensitivity on Nonhost Plants," J. Bacteriol. 168:512-22 (1986); Willis, D.K., et al., "hrp Genes of Phytopathogenic Bacteria," Mol. Plant-Microbe Interact. 4:132-138 (1991)). Consequently, the hypersensitive response may hold clues to both the nature of plant defense and the basis for bacterial pathogenicity. The hrp genes are widespread in Gram-negative plant pathogens, where they are clustered, conserved, and in some cases interchangeable (Willis, D.K., et al., "hrp Genes of Phytopathogenic Bacteria," Mol. Plant-Microbe Interact. 4:132- 138 (1991); Bonas, U., "hrp Genes of Phytopathogenic Bacteria," pages 79-98 in: Current Topics in Microbiology and Immunology: Bacterial Pathogenesis of Plants and Animals - Molecular and Cellular Mechanisms. J.L. Dangl, ed. Springer- Verlag, Berlin (1994)). Several hrp genes encode components of a protein secretion pathway similar to one used by Yersinia, Shigella, and Salmonella spp. to secrete proteins essential in animal diseases (Van Gijsegem, et al., "Evolutionary Conservation of Pathogenicity Determinants Among Plant and Animal Pathogenic Bacteria," Trends Microbiol. 1 :175-180 (1993)). In E. amylovora, P. syringae, and P. solαnαceαrum, hrp genes have been shown to control the production and secretion of glycine-rich, protein elicitors of the hypersensitive response (He, S.Y., et al. "Pseudomonas
Syringae pv. Syringae HarpinPss: a Protein that is Secreted via the Hrp Pathway and Elicits the Hypersensitive Response in Plants," Cell 73:1255-1266 (1993), Wei, Z.-H., et al., "Hrpl of Erwinia amylovora Functions in Secretion of Harpin and is a Member of aNew Protein Family," J. Bacteriol. 175:7958-7967 (1993); Arlat, M. et al. "PopAl, a Protein Which Induces a Hypersensitive-like Response on Specific Petunia Genotypes, is Secreted via the Hrp Pathway of Pseudomonas solanacearum," EMBO L 13:543-553 (1994)).
The first of these proteins was discovered in E. amylovora Ea321, a bacterium that causes fire blight of rosaceous plants, and was designated harpin (Wei, Z.-M., et al, "Harpin, Elicitor of the Hypersensitive Response Produced by the Plant Pathogen Erwinia amylovora," Science 257:85-88 (1992)). Mutations in the encoding hrpN gene revealed that harpin is required for E. amylovora to elicit a hypersensitive response in nonhost tobacco leaves and incite disease symptoms in highly susceptible pear fruit. The P. solanacearum GMI1000 PopAl protein has similar physical properties and also elicits the hypersensitive response in leaves of tobacco, which is not a host of that strain (Arlat, et al. "PopAl, a Protein Which Induces a Hypersensitive-like Response on Specific Petunia Genotypes, is Secreted via the Hrp Pathway of Pseudomonas solanacearum," EMBO J. 13:543-53 (1994)). However, P. solanacearum popA mutants still elicit the hypersensitive response in tobacco and incite disease in tomato. Thus, the role of these glycine-rich hypersensitive response elicitors can vary widely among Gram-negative plant pathogens. Other plant pathogenic hypersensitive response elicitors have been isolated, cloned, and sequenced. These include: Erwinia chrysanthemi (Bauer, et. al, "Erwinia chrysanthemi HarpinEch: Soft-Rot Pathogenesis," MPMI 8(4): 484-91 (1995)); Erwinia carotovora (Cui, et. al., "The RsmA" Mutants of Erwinia carotovora subsp. carotovora Strain Ecc71 Overexpress hrpNκcc and Elicit a Hypersensitive Reaction-like Response in Tobacco Leaves," MPMI 9(7): 565-73 (1996)); Erwinia stewartii (Ahmad, et. al., "Harpin is not Necessary for the Pathogenicity of Erwinia stewartii on Maize," 8th Int'l. Cong. Molec. Plant-Microb. Inter. July 14-19, 1996 and Ahmad, et. al., "Harpin is not Necessary for the Pathogenicity of Erwinia stewartii on Maize," Ann. Mtg. Am. Phytopath. Soc. July 27-31, 1996); and Pseudomonas syringae pv. syringae (WO 94/26782 to Cornell Research Foundation, Inc.). The present invention seeks to identify fragments of hypersensitive response elicitor proteins or polypeptides, which fragments do not elicit a hypersensitive response but are active when utilized in conjunction with plants.
SUMMARY OF THE INVENTION
The present invention is directed to isolated fragments of an Erwinia hypersensitive response elicitor protein or polypeptide which fragments do not elicit a hypersensitive response in plants but are otherwise active when utilized in conjunction with plants. Also disclosed are isolated DNA molecules which encode such fragments.
The fragments of hypersensitive response elicitors according to the present invention have the following activity when utilized in conjunction with plants: imparting disease resistance to plants, enhancing plant growth and/or controlling insects. This involves applying the fragments in a non-infectious form to plants or plant seeds under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds.
As an alternative to applying the fragments to plants or plant seeds in order to impart disease resistance, to enhance plant growth, and/or to control insects on plants, transgenic plants or plant seeds can be utilized. When utilizing transgenic plants, this involves providing a transgenic plant transformed with a DNA molecule encoding a fragment of a hypersensitive response elicitor protein or polypeptide in accordance with the present invention and growing the plant under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects in the plants or plants grown from the plant seeds. Alternatively, a transgenic plant seed transformed with the DNA molecule encoding such a fragment can be provided and planted in soil. A plant is then propagated under conditions effective to impart disease resistance, to enhance plant growth, and/or to control insects on plants or plants grown from the plant seeds. BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 shows truncated proteins of the hypersensitive response elicitor protein or polypeptide. Figure 2 shows a list of synthesized oligonucleotide primers for construction of truncated harpin proteins. N represents the N-terminus (5' region), and C represents the C-terminus (3' region). The primers correspond to the indicated sequence identification numbers for the present application: Nl (SEQ. ID. No. 1), N76 (SEQ. ID. No. 2), N99 (SEQ. ID. No. 3), N105 (SEQ. ID. No. 4), Nl 10 (SEQ. ID. No. 5), N137 (SEQ. ID. No. 6), N150 (SEQ. ID. No. 7), N169 (SEQ. ID. No. 8), N210 (SEQ. ID. No. 9), N267 (SEQ. ID. No. 10), N343 (SEQ. ID. No. 11), C75 (SEQ. ID. No. 12), C104 (SEQ. ID. No. 13), C168 (SEQ. ID. No. 14), C180 (SEQ. ID. No. 15), C204 (SEQ. ID. No. 16), C209 (SEQ. ID. No. 17), C266 (SEQ. ID. No. 18), C342 (SEQ. ID. No. 19), and C403 (SEQ. ID. No. 20).
DETAILED DESCRIPTION OF THE INVENTION
The present invention is directed to isolated fragments of a hypersensitive response elicitor protein or polypeptide where the fragments do not elicit a hypersensitive response but have other activity in plants. Also disclosed are DNA molecules encoding such fragments as well as expression systems, host cells, and plants containing such molecules. Uses of the fragments themselves and the DNA molecules encoding them are disclosed.
The fragments of hypersensitive response elicitor polypeptides or proteins according to the present invention are derived from hypersensitive response elicitor polypeptides or proteins of a wide variety of fungal and bacterial pathogens. Such polypeptides or proteins are able to elicit local necrosis in plant tissue contacted by the elicitor. Examples of suitable bacterial sources of polypeptide or protein elicitors include Erwinia, Pseudomonas, and Xanthomonas species (e.g., the following bacteria: Erwinia amylovora, Erwinia chrysanthemi, Erwinia stewartii, Erwinia carotovora, Pseudomonas syringae, Pseudomonas solancearum, Xanthomonas campestris, and mixtures thereof). An example of a fungal source of a hypersensitive response elicitor protein or polypeptide is Phytophthora. Suitable species of Phytophthora include Phytophthora par asitica, Phytophthora cryptogea, Phytophthora cinnamomi, Phytophthora capsici, Phytophthora megasperma, and Phytophthora citrophthora.
The hypersensitive response elicitor polypeptide or protein from Erwinia chrysanthemi has an amino acid sequence corresponding to SEQ. ID. No. 21 as follows:
Met Gin He Thr He Lys Ala His He Gly Gly Asp Leu Gly Val Ser 1 5 10 15
Gly Leu Gly Ala Gin Gly Leu Lys Gly Leu Asn Ser Ala Ala Ser Ser 20 25 30
Leu Gly Ser Ser Val Asp Lys Leu Ser Ser Thr He Asp Lys Leu Thr 35 40 45 Ser Ala Leu Thr Ser Met Met Phe Gly Gly Ala Leu Ala Gin Gly Leu
50 55 60
Gly Ala Ser Ser Lys Gly Leu Gly Met Ser Asn Gin Leu Gly Gin Ser 65 70 75 80
Phe Gly Asn Gly Ala Gin Gly Ala Ser Asn Leu Leu Ser Val Pro Lys 85 90 95
Ser Gly Gly Asp Ala Leu Ser Lys Met Phe Asp Lys Ala Leu Asp Asp 100 105 110
Leu Leu Gly His Asp Thr Val Thr Lys Leu Thr Asn Gin Ser Asn Gin 115 120 125 Leu Ala Asn Ser Met Leu Asn Ala Ser Gin Met Thr Gin Gly Asn Met
130 135 140
Asn Ala Phe Gly Ser Gly Val Asn Asn Ala Leu Ser Ser He Leu Gly 145 150 155 160
Asn Gly Leu Gly Gin Ser Met Ser Gly Phe Ser Gin Pro Ser Leu Gly 165 170 175
Ala Gly Gly Leu Gin Gly Leu Ser Gly Ala Gly Ala Phe Asn Gin Leu 180 185 190
Gly Asn Ala He Gly Met Gly Val Gly Gin Asn Ala Ala Leu Ser Ala 195 200 205 Leu Ser Asn Val Ser Thr His Val Asp Gly Asn Asn Arg His Phe Val
210 215 220
Asp Lys Glu Asp Arg Gly Met Ala Lys Glu He Gly Gin Phe Met Asp 225 230 235 240 Gln Tyr Pro Glu He Phe Gly Lys Pro Glu Tyr Gin Lys Asp Gly Trp 245 250 255
Ser Ser Pro Lys Thr Asp Asp Lys Ser Trp Ala Lys Ala Leu Ser Lys 260 265 270 Pro Asp Asp Asp Gly Met Thr Gly Ala Ser Met Asp Lys Phe Arg Gin 275 280 285
Ala Met Gly Met He Lys Ser Ala Val Ala Gly Asp Thr Gly Asn Thr 290 295 300
Asn Leu Asn Leu Arg Gly Ala Gly Gly Ala Ser Leu Gly He Asp Ala 305 310 315 320
Ala Val Val Gly Asp Lys He Ala Asn Met Ser Leu Gly Lys Leu Ala 325 330 335
Asn Ala
This hypersensitive response elicitor polypeptide or protein has a molecular weight of
34 kDa, is heat stable, has a glycine content of greater than 16%, and contains substantially no cysteine. The Erwinia chrysanthemi hypersensitive response elicitor polypeptide or protein is encoded by a DNA molecule having a nucleotide sequence corresponding to SEQ. ID. No. 22 as follows:
CGATTTTACC CGGGTGAACG TGCTATGACC GACAGCATCA CGGTATTCGA CACCGTTACG 60
GCGTTTATGG CCGCGATGAA CCGGCATCAG GCGGCGCGCT GGTCGCCGCA ATCCGGCGTC 120
GATCTGGTAT TTCAGTTTGG GGACACCGGG CGTGAACTCA TGATGCAGAT TCAGCCGGGG 180 CAGCAATATC CCGGCATGTT GCGCACGCTG CTCGCTCGTC GTTATCAGCA GGCGGCAGAG 240
TGCGATGGCT GCCATCTGTG CCTGAACGGC AGCGATGTAT TGATCCTCTG GTGGCCGCTG 300
CCGTCGGATC CCGGCAGTTA TCCGCAGGTG ATCGAACGTT TGTTTGAACT GGCGGGAATG 360
ACGTTGCCGT CGCTATCCAT AGCACCGACG GCGCGTCCGC AGACAGGGAA CGGACGCGCC 420
CGATCATTAA GATAAAGGCG GCTTTTTTTA TTGCAAAACG GTAACGGTGA GGAACCGTTT 480 CACCGTCGGC GTCACTCAGT AACAAGTATC CATCATGATG CCTACATCGG GATCGGCGTG 540
GGCATCCGTT GCAGATACTT TTGCGAACAC CTGACATGAA TGAGGAAACG AAATTATGCA 600
AATTACGATC AAAGCGCACA TCGGCGGTGA TTTGGGCGTC TCCGGTCTGG GGCTGGGTGC 660
TCAGGGACTG AAAGGACTGA ATTCCGCGGC TTCATCGCTG GGTTCCAGCG TGGATAAACT 720
GAGCAGCACC ATCGATAAGT TGACCTCCGC GCTGACTTCG ATGATGTTTG GCGGCGCGCT 780 GGCGCAGGGG CTGGGCGCCA GCTCGAAGGG GCTGGGGATG AGCAATCAAC TGGGCCAGTC 840 TTTCGGCAAT GGCGCGCAGG GTGCGAGCAA CCTGCTATCC GTACCGAAAT CCGGCGGCGA 900 TGCGTTGTCA AAAATGTTTG ATAAAGCGCT GGACGATCTG CTGGGTCATG ACACCGTGAC 960 CAAGCTGACT AACCAGAGCA ACCAACTGGC TAATTCAATG CTGAACGCCA GCCAGATGAC 1020 CCAGGGTAAT ATGAATGCGT TCGGCAGCGG TGTGAACAAC GCACTGTCGT CCATTCTCGG 1080 CAACGGTCTC GGCCAGTCGA TGAGTGGCTT CTCTCAGCCT TCTCTGGGGG CAGGCGGCTT 1140 GCAGGGCCTG AGCGGCGCGG GTGCATTCAA CCAGTTGGGT AATGCCATCG GCATGGGCGT 1200 GGGGCAGAAT GCTGCGCTGA GTGCGTTGAG TAACGTCAGC ACCCACGTAG ACGGTAACAA 1260 CCGCCACTTT GTAGATAAAG AAGATCGCGG CATGGCGAAA GAGATCGGCC AGTTTATGGA 1320 TCAGTATCCG GAAATATTCG GTAAACCGGA ATACCAGAAA GATGGCTGGA GTTCGCCGAA 1380 GACGGACGAC AAATCCTGGG CTAAAGCGCT GAGTAAACCG GATGATGACG GTATGACCGG 1440 CGCCAGCATG GACAAATTCC GTCAGGCGAT GGGTATGATC AAAAGCGCGG TGGCGGGTGA 1500 TACCGGCAAT ACCAACCTGA ACCTGCGTGG CGCGGGCGGT GCATCGCTGG GTATCGATGC 1560 GGCTGTCGTC GGCGATAAAA TAGCCAACAT GTCGCTGGGT AAGCTGGCCA ACGCCTGATA 1620 ATCTGTGCTG GCCTGATAAA GCGGAAACGA AAAAAGAGAC GGGGAAGCCT GTCTCTTTTC 1680 TTATTATGCG GTTTATGCGG TTACCTGGAC CGGTTAATCA TCGTCATCGA TCTGGTACAA 1740 ACGCACATTT TCCCGTTCAT TCGCGTCGTT ACGCGCCACA ATCGCGATGG CATCTTCCTC 1800 GTCGCTCAGA TTGCGCGGCT GATGGGGAAC GCCGGGTGGA ATATAGAGAA ACTCGCCGGC 1860 CAGATGGAGA CACGTCTGCG ATAAATCTGT GCCGTAACGT GTTTCTATCC GCCCCTTTAG 1920 CAGATAGATT GCGGTTTCGT AATCAACATG GTAATGCGGT TCCGCCTGTG CGCCGGCCGG 1980 GATCACCACA ATATTCATAG AAAGCTGTCT TGCACCTACC GTATCGCGGG AGATACCGAC 2040 AAAATAGGGC AGTTTTTGCG TGGTATCCGT GGGGTGTTCC GGCCTGACAA TCTTGAGTTG 2100 GTTCGTCATC ATCTTTCTCC ATCTGGGCGA CCTGATCGGT T 2141
The hypersensitive response elicitor polypeptide or protein derived from Erwinia amylovora has an amino acid sequence corresponding to SEQ. ID. No. 23 as follows:
Met Ser Leu Asn Thr Ser Gly Leu Gly Ala Ser Thr Met Gin He Ser 1 5 10 15
He Gly Gly Ala Gly Gly Asn Asn Gly Leu Leu Gly Thr Ser Arg Gin 20 25 30 Asn Ala Gly Leu Gly Gly Asn Ser Ala Leu Gly Leu Gly Gly Gly Asn 35 40 45
Gin Asn Asp Thr Val Asn Gin Leu Ala Gly Leu Leu Thr Gly Met Met 50 55 60 Met Met Met Ser Met Met Gly Gly Gly Gly Leu Met Gly Gly Gly Leu 65 70 75 80
Gly Gly Gly Leu Gly Asn Gly Leu Gly Gly Ser Gly Gly Leu Gly Glu 85 90 95
Gly Leu Ser Asn Ala Leu Asn Asp Met Leu Gly Gly Ser Leu Asn Thr 100 105 110
Leu Gly Ser Lys Gly Gly Asn Asn Thr Thr Ser Thr Thr Asn Ser Pro 115 120 125
Leu Asp Gin Ala Leu Gly He Asn Ser Thr Ser Gin Asn Asp Asp Ser 130 135 140 Thr Ser Gly Thr Asp Ser Thr Ser Asp Ser Ser Asp Pro Met Gin Gin 145 150 155 160
Leu Leu Lys Met Phe Ser Glu He Met Gin Ser Leu Phe Gly Asp Gly 165 170 175
Gin Asp Gly Thr Gin Gly Ser Ser Ser Gly Gly Lys Gin Pro Thr Glu 180 185 190
Gly Glu Gin Asn Ala Tyr Lys Lys Gly Val Thr Asp Ala Leu Ser Gly 195 200 205
Leu Met Gly Asn Gly Leu Ser Gin Leu Leu Gly Asn Gly Gly Leu Gly 210 215 220 Gly Gly Gin Gly Gly Asn Ala Gly Thr Gly Leu Asp Gly Ser Ser Leu 225 230 235 240
Gly Gly Lys Gly Leu Gin Asn Leu Ser Gly Pro Val Asp Tyr Gin Gin 245 250 255
Leu Gly Asn Ala Val Gly Thr Gly He Gly Met Lys Ala Gly He Gin 260 265 270
Ala Leu Asn Asp He Gly Thr His Arg His Ser Ser Thr Arg Ser Phe 275 280 285
Val Asn Lys Gly Asp Arg Ala Met Ala Lys Glu He Gly Gin Phe Met 290 295 300 Asp Gin Tyr Pro Glu Val Phe Gly Lys Pro Gin Tyr Gin Lys Gly Pro 305 310 315 320
Gly Gin Glu Val Lys Thr Asp Asp Lys Ser Trp Ala Lys Ala Leu Ser 325 330 335
Lys Pro Asp Asp Asp Gly Met Thr Pro Ala Ser Met Glu Gin Phe Asn 340 345 350
Lys Ala Lys Gly Met He Lys Arg Pro Met Ala Gly Asp Thr Gly Asn 355 360 365
Gly Asn Leu Gin Ala Arg Gly Ala Gly Gly Ser Ser Leu Gly He Asp 370 375 380
Ala Met Met Ala Gly Asp Ala He Asn Asn Met Ala Leu Gly Lys Leu 385 390 395 400
Gly Ala Ala
This hypersensitive response elicitor polypeptide or protein has a molecular weight of about 39 kDa, has a pl of approximately 4.3, and is heat stable at 100°C for at least 10 minutes. This hypersensitive response elicitor polypeptide or protein has substantially no cysteine. The hypersensitive response elicitor polypeptide or protein derived from Erwinia amylovora is more fully described in Wei, Z.-M., R. J. Laby, C. H. Zumoff, D. W. Bauer, S.-Y. He, A. Collmer, and S. V. Beer, "Harpin, Elicitor of the Hypersensitive Response Produced by the Plant Pathogen Erwinia amylovora," Science 257:85-88 (1992), which is hereby incorporated by reference. The DNA molecule encoding this polypeptide or protein has a nucleotide sequence corresponding to SEQ. ID. No. 24 as follows:
AAGCTTCGGC ATGGCACGTT TGACCGTTGG GTCGGCAGGG TACGTTTGAA TTATTCATAA 60
GAGGAATACG TTATGAGTCT GAATACAAGT GGGCTGGGAG CGTCAACGAT GCAAATTTCT 120
ATCGGCGGTG CGGGCGGAAA TAACGGGTTG CTGGGTACCA GTCGCCAGAA TGCTGGGTTG 180
GGTGGCAATT CTGCACTGGG GCTGGGCGGC GGTAATCAAA ATGATACCGT CAATCAGCTG 240
GCTGGCTTAC TCACCGGCAT GATGATGATG ATGAGCATGA TGGGCGGTGG TGGGCTGATG 300 GGCGGTGGCT TAGGCGGTGG CTTAGGTAAT GGCTTGGGTG GCTCAGGTGG CCTGGGCGAA 360
GGACTGTCGA ACGCGCTGAA CGATATGTTA GGCGGTTCGC TGAACACGCT GGGCTCGAAA 420
GGCGGCAACA ATACCACTTC AACAACAAAT TCCCCGCTGG ACCAGGCGCT GGGTATTAAC 480
TCAACGTCCC AAAACGACGA TTCCACCTCC GGCACAGATT CCACCTCAGA CTCCAGCGAC 540
CCGATGCAGC AGCTGCTGAA GATGTTCAGC GAGATAATGC AAAGCCTGTT TGGTGATGGG 600 CAAGATGGCA CCCAGGGCAG TTCCTCTGGG GGCAAGCAGC CGACCGAAGG CGAGCAGAAC 660
GCCTATAAAA AAGGAGTCAC TGATGCGCTG TCGGGCCTGA TGGGTAATGG TCTGAGCCAG 720
CTCCTTGGCA ACGGGGGACT GGGAGGTGGT CAGGGCGGTA ATGCTGGCAC GGGTCTTGAC 780
GGTTCGTCGC TGGGCGGCAA AGGGCTGCAA AACCTGAGCG GGCCGGTGGA CTACCAGCAG 840 TTAGGTAACG CCGTGGGTAC CGGTATCGGT ATGAAAGCGG GCATTCAGGC GCTGAATGAT 900 ATCGGTACGC ACAGGCACAG TTCAACCCGT TCTTTCGTCA ATAAAGGCGA TCGGGCGATG 960
GCGAAGGAAA TCGGTCAGTT CATGGACCAG TATCCTGAGG TGTTTGGCAA GCCGCAGTAC 1020
CAGAAAGGCC CGGGTCAGGA GGTGAAAACC GATGACAAAT CATGGGCAAA AGCACTGAGC 1080
AAGCCAGATG ACGACGGAAT GACACCAGCC AGTATGGAGC AGTTCAACAA AGCCAAGGGC 1140
ATGATCAAAA GGCCCATGGC GGGTGATACC GGCAACGGCA ACCTGCAGGC ACGCGGTGCC 1200
GGTGGTTCTT CGCTGGGTAT TGATGCCATG ATGGCCGGTG ATGCCATTAA CAATATGGCA 1260
CTTGGCAAGC TGGGCGCGGC TTAAGCTT 1288
Another potentially suitable hypersensitive response elicitor from Erwinia amylovora is disclosed in U.S. Patent Application Serial No. 09/120,927, which is hereby incorporated by reference. The protein is encoded by a DNA molecule having a nucleic acid sequence of SEQ. ID. No. 25 as follows:
ATGTCAATTC TTACGCTTAA CAACAATACC TCGTCCTCGC CGGGTCTGTT CCAGTCCGGG 60
GGGGACAACG GGCTTGGTGG TCATAATGCA AATTCTGCGT TGGGGCAACA ACCCATCGAT 120 CGGCAAACCA TTGAGCAAAT GGCTCAATTA TTGGCGGAAC TGTTAAAGTC ACTGCTATCG 180
CCACAATCAG GTAATGCGGC AACCGGAGCC GGTGGCAATG ACCAGACTAC AGGAGTTGGT 240
AACGCTGGCG GCCTGAACGG ACGAAAAGGC ACAGCAGGAA CCACTCCGCA GTCTGACAGT 300
CAGAACATGC TGAGTGAGAT GGGCAACAAC GGGCTGGATC AGGCCATCAC GCCCGATGGC 360
CAGGGCGGCG GGCAGATCGG CGATAATCCT TTACTGAAAG CCATGCTGAA GCTTATTGCA 420 CGCATGATGG ACGGCCAAAG CGATCAGTTT GGCCAACCTG GTACGGGCAA CAACAGTGCC 480
TCTTCCGGTA CTTCTTCATC TGGCGGTTCC CCTTTTAACG ATCTATCAGG GGGGAAGGCC 540
CCTTCCGGCA ACTCCCCTTC CGGCAACTAC TCTCCCGTCA GTACCTTCTC ACCCCCATCC 600
ACGCCAACGT CCCCTACCTC ACCGCTTGAT TTCCCTTCTT CTCCCACCAA AGCAGCCGGG 660
GGCAGCACGC CGGTAACCGA TCATCCTGAC CCTGTTGGTA GCGCGGGCAT CGGGGCCGGA 720 AATTCGGTGG CCTTCACCAG CGCCGGCGCT AATCAGACGG TGCTGCATGA CACCATTACC 780
GTGAAAGCGG GTCAGGTGTT TGATGGCAAA GGACAAACCT TCACCGCCGG TTCAGAATTA 840
GGCGATGGCG GCCAGTCTGA AAACCAGAAA CCGCTGTTTA TACTGGAAGA CGGTGCCAGC 900
CTGAAAAACG TCACCATGGG CGACGACGGG GCGGATGGTA TTCATCTTTA CGGTGATGCC 960
AAAATAGACA ATCTGCACGT CACCAACGTG GGTGAGGACG CGATTACCGT TAAGCCAAAC 1020 AGCGCGGGCA AAAAATCCCA CGTTGAAATC ACTAACAGTT CCTTCGAGCA CGCCTCTGAC 1080
AAGATCCTGC AGCTGAATGC CGATACTAAC CTGAGCGTTG ACAACGTGAA GGCCAAAGAC 1140 TTTGGTACTT TTGTACGCAC TAACGGCGGT CAACAGGGTA ACTGGGATCT GAATCTGAGC 1200
CATATCAGCG CAGAAGACGG TAAGTTCTCG TTCGTTAAAA GCGATAGCGA GGGGCTAAAC 1260
GTCAATACCA GTGATATCTC ACTGGGTGAT GTTGAAAACC ACTACAAAGT GCCGATGTCC 1320
GCCAACCTGA AGGTGGCTGA ATGA 1344
See GenBank Accession No. U94513. The isolated DNA molecule of the present invention encodes a hypersensitive response elicitor protein or polypeptide having an amino acid sequence of SEQ. ID. No. 26 as follows:
Met Ser He Leu Thr Leu Asn Asn Asn Thr Ser Ser Ser Pro Gly Leu
1 5 10 15
Phe Gin Ser Gly Gly Asp Asn Gly Leu Gly Gly His Asn Ala Asn Ser 20 25 30
Ala Leu Gly Gin Gin Pro He Asp Arg Gin Thr He Glu Gin Met Ala
35 40 45
Gin Leu Leu Ala Glu Leu Leu Lys Ser Leu Leu Ser Pro Gin Ser Gly 50 55 60
Asn Ala Ala Thr Gly Ala Gly Gly Asn Asp Gin Thr Thr Gly Val Gly 65 70 75 80 Asn Ala Gly Gly Leu Asn Gly Arg Lys Gly Thr Ala Gly Thr Thr Pro
85 90 95
Gin Ser Asp Ser Gin Asn Met Leu Ser Glu Met Gly Asn Asn Gly Leu 100 105 110
Asp Gin Ala He Thr Pro Asp Gly Gin Gly Gly Gly Gin He Gly Asp 115 120 125
Asn Pro Leu Leu Lys Ala Met Leu Lys Leu He Ala Arg Met Met Asp 130 135 140
Gly Gin Ser Asp Gin Phe Gly Gin Pro Gly Thr Gly Asn Asn Ser Ala 145 150 155 160 Ser Ser Gly Thr Ser Ser Ser Gly Gly Ser Pro Phe Asn Asp Leu Ser
165 170 175
Gly Gly Lys Ala Pro Ser Gly Asn Ser Pro Ser Gly Asn Tyr Ser Pro 180 185 190
Val Ser Thr Phe Ser Pro Pro Ser Thr Pro Thr Ser Pro Thr Ser Pro 195 200 205
Leu Asp Phe Pro Ser Ser Pro Thr Lys Ala Ala Gly Gly Ser Thr Pro 210 215 220 Val Thr Asp His Pro Asp Pro Val Gly Ser Ala Gly He Gly Ala Gly 225 230 235 240
Asn Ser Val Ala Phe Thr Ser Ala Gly Ala Asn Gin Thr Val Leu His 245 250 255
Asp Thr He Thr Val Lys Ala Gly Gin Val Phe Asp Gly Lys Gly Gin 260 265 270 Thr Phe Thr Ala Gly Ser Glu Leu Gly Asp Gly Gly Gin Ser Glu Asn
275 280 285
Gin Lys Pro Leu Phe He Leu Glu Asp Gly Ala Ser Leu Lys Asn Val 290 295 300
Thr Met Gly Asp Asp Gly Ala Asp Gly He His Leu Tyr Gly Asp Ala
305 310 315 320
Lys He Asp Asn Leu His Val Thr Asn Val Gly Glu Asp Ala He Thr 325 330 335
Val Lys Pro Asn Ser Ala Gly Lys Lys Ser His Val Glu He Thr Asn 340 345 350 Ser Ser Phe Glu His Ala Ser Asp Lys He Leu Gin Leu Asn Ala Asp
355 360 365
Thr Asn Leu Ser Val Asp Asn Val Lys Ala Lys Asp Phe Gly Thr Phe
370 375 380
Val Arg Thr Asn Gly Gly Gin Gin Gly Asn Trp Asp Leu Asn Leu Ser
385 390 395 400
His He Ser Ala Glu Asp Gly Lys Phe Ser Phe Val Lys Ser Asp Ser 405 410 415
Glu Gly Leu Asn Val Asn Thr Ser Asp He Ser Leu Gly Asp Val Glu
420 425 430 Asn His Tyr Lys Val Pro Met Ser Ala Asn Leu Lys Val Ala Glu
435 440 445
This protein or polypeptide is acidic, rich in glycine and serine, and lacks cysteine. It is also heat stable, protease sensitive, and suppressed by inhibitors of plant metabolism. The protein or polypeptide of the present invention has a predicted molecular size of ca. 4.5 kDa.
Another potentially suitable hypersensitive response elicitor from
Erwinia amylovora is disclosed in U.S. Patent Application Serial No. 09/120,663 which is hereby incorporated by reference. The protein is encoded by a DNA molecule having a nucleic acid sequence of SEQ. ID. No. 27 as follows: ATGGAATTAA AATCACTGGG AACTGAACAC AAGGCGGCAG TACACACAGC GGCGCACAAC 60
CCTGTGGGGC ATGGTGTTGC CTTACAGCAG GGCAGCAGCA GCAGCAGCCC GCAAAATGCC 120
GCTGCATCAT TGGCGGCAGA AGGCAAAAAT CGTGGGAAAA TGCCGAGAAT TCACCAGCCA 180
TCTACTGCGG CTGATGGTAT CAGCGCTGCT CACCAGCAAA AGAAATCCTT CAGTCTCAGG 240
GGCTGTTTGG GGACGAAAAA ATTTTCCAGA TCGGCACCGC AGGGCCAGCC AGGTACCACC 300
CACAGCAAAG GGGCAACATT GCGCGATCTG CTGGCGCGGG ACGACGGCGA AACGCAGCAT 360
GAGGCGGCCG CGCCAGATGC GGCGCGTTTG ACCCGTTCGG GCGGCGTCAA ACGCCGCAAT 420 ATGGACGACA TGGCCGGGCG GCCAATGGTG AAAGGTGGCA GCGGCGAAGA TAAGGTACCA 480
ACGCAGCAAA AACGGCATCA GCTGAACAAT TTTGGCCAGA TGCGCCAAAC GATGTTGAGC 540
AAAATGGCTC ACCCGGCTTC AGCCAACGCC GGCGATCGCC TGCAGCATTC ACCGCCGCAC 600
ATCCCGGGTA GCCACCACGA AATCAAGGAA GAACCGGTTG GCTCCACCAG CAAGGCAACA 660
ACGGCCCACG CAGACAGAGT GGAAATCGCT CAGGAAGATG ACGACAGCGA ATTCCAGCAA 720 CTGCATCAAC AGCGGCTGGC GCGCGAACGG GAAAATCCAC CGCAGCCGCC CAAACTCGGC 780
GTTGCCACAC CGATTAGCGC CAGGTTTCAG CCCAAACTGA CTGCGGTTGC GGAAAGCGTC 840
CTTGAGGGGA CAGATACCAC GCAGTCACCC CTTAAGCCGC AATCAATGCT GAAAGGAAGT 900
GGAGCCGGGG TAACGCCGCT GGCGGTAACG CTGGATAAAG GCAAGTTGCA GCTGGCACCG 960
GATAATCCAC CCGCGCTCAA TACGTTGTTG AAGCAGACAT TGGGTAAAGA CACCCAGCAC 1020 TATCTGGCGC ACCATGCCAG CAGCGACGGT AGCCAGCATC TGCTGCTGGA CAACAAAGGC 1080
CACCTGTTTG ATATCAAAAG CACCGCCACC AGCTATAGCG TGCTGCACAA CAGCCACCCC 1140
GGTGAGATAA AGGGCAAGCT GGCGCAGGCG GGTACTGGCT CCGTCAGCGT AGACGGTAAA 1200
AGCGGCAAGA TCTCGCTGGG GAGCGGTACG CAAAGTCACA ACAAAACAAT GCTAAGCCAA 1260
CCGGGGGAAG CGCACCGTTC CTTATTAACC GGCATTTGGC AGCATCCTGC TGGCGCAGCG 1320 CGGCCGCAGG GCGAGTCAAT CCGCCTGCAT GACGACAAAA TTCATATCCT GCATCCGGAG 1380
CTGGGCGTAT GGCAATCTGC GGATAAAGAT ACCCACAGCC AGCTGTCTCG CCAGGCAGAC 1440
GGTAAGCTCT ATGCGCTGAA AGACAACCGT ACCCTGCAAA ACCTCTCCGA TAATAAATCC 1500
TCAGAAAAGC TGGTCGATAA AATCAAATCG TATTCCGTTG ATCAGCGGGG GCAGGTGGCG 1560
ATCCTGACGG ATACTCCCGG CCGCCATAAG ATGAGTATTA TGCCCTCGCT GGATGCTTCC 1620 CCGGAGAGCC ATATTTCCCT CAGCCTGCAT TTTGCCGATG CCCACCAGGG GTTATTGCAC 1680
GGGAAGTCGG AGCTTGAGGC ACAATCTGTC GCGATCAGCC ATGGGCGACT GGTTGTGGCC 1740
GATAGCGAAG GCAAGCTGTT TAGCGCCGCC ATTCCGAAGC AAGGGGATGG AAACGAACTG 1800
AAAATGAAAG CCATGCCTCA GCATGCGCTC GATGAACATT TTGGTCATGA CCACCAGATT 1860
TCTGGATTTT TCCATGACGA CCACGGCCAG CTTAATGCGC TGGTGAAAAA TAACTTCAGG 1920 CAGCAGCATG CCTGCCCGTT GGGTAACGAT CATCAGTTTC ACCCCGGCTG GAACCTGACT 1980 GATGCGCTGG TTATCGACAA TCAGCTGGGG CTGCATCATA CCAATCCTGA ACCGCATGAG 2040
ATTCTTGATA TGGGGCATTT AGGCAGCCTG GCGTTACAGG AGGGCAAGCT TCACTATTTT 2100
GACCAGCTGA CCAAAGGGTG GACTGGCGCG GAGTCAGATT GTAAGCAGCT GAAAAAAGGC 2160
CTGGATGGAG CAGCTTATCT ACTGAAAGAC GGTGAAGTGA AACGCCTGAA TATTAATCAG 2220 AGCACCTCCT CTATCAAGCA CGGAACGGAA AACGTTTTTT CGCTGCCGCA TGTGCGCAAT 2280
AAACCGGAGC CGGGAGATGC CCTGCAAGGG CTGAATAAAG ACGATAAGGC CCAGGCCATG 2340
GCGGTGATTG GGGTAAATAA ATACCTGGCG CTGACGGAAA AAGGGGACAT TCGCTCCTTC 2400
CAGATAAAAC CCGGCACCCA GCAGTTGGAG CGGCCGGCAC AAACTCTCAG CCGCGAAGGT 2460
ATCAGCGGCG AACTGAAAGA CATTCATGTC GACCACAAGC AGAACCTGTA TGCCTTGACC 2520 CACGAGGGAG AGGTGTTTCA TCAGCCGCGT GAAGCCTGGC AGAATGGTGC CGAAAGCAGC 2580
AGCTGGCACA AACTGGCGTT GCCACAGAGT GAAAGTAAGC TAAAAAGTCT GGACATGAGC 2640
CATGAGCACA AACCGATTGC CACCTTTGAA GACGGTAGCC AGCATCAGCT GAAGGCTGGC 2700
GGCTGGCACG CCTATGCGGC ACCTGAACGC GGGCCGCTGG CGGTGGGTAC CAGCGGTTCA 2760
CAAACCGTCT TTAACCGACT AATGCAGGGG GTGAAAGGCA AGGTGATCCC AGGCAGCGGG 2820 TTGACGGTTA AGCTCTCGGC TCAGACGGGG GGAATGACCG GCGCCGAAGG GCGCAAGGTC 2880
AGCAGTAAAT TTTCCGAAAG GATCCGCGCC TATGCGTTCA ACCCAACAAT GTCCACGCCG 2940
CGACCGATTA AAAATGCTGC TTATGCCACA CAGCACGGCT GGCAGGGGCG TGAGGGGTTG 3000
AAGCCGTTGT ACGAGATGCA GGGAGCGCTG ATTAAACAAC TGGATGCGCA TAACGTTCGT 3060
CATAACGCGC CACAGCCAGA TTTGCAGAGC AAACTGGAAA CTCTGGATTT AGGCGAACAT 3120 GGCGCAGAAT TGCTTAACGA CATGAAGCGC TTCCGCGACG AACTGGAGCA GAGTGCAACC 3180
CGTTCGGTGA CCGTTTTAGG TCAACATCAG GGAGTGCTAA AAAGCAACGG TGAAATCAAT 3240
AGCGAATTTA AGCCATCGCC CGGCAAGGCG TTGGTCCAGA GCTTTAACGT CAATCGCTCT 3300
GGTCAGGATC TAAGCAAGTC ACTGCAACAG GCAGTACATG CCACGCCGCC ATCCGCAGAG 3360
AGTAAACTGC AATCCATGCT GGGGCACTTT GTCAGTGCCG GGGTGGATAT GAGTCATCAG 3420 AAGGGCGAGA TCCCGCTGGG CCGCCAGCGC GATCCGAATG ATAAAACCGC ACTGACCAAA 3480
TCGCGTTTAA TTTTAGATAC CGTGACCATC GGTGAACTGC ATGAACTGGC CGATAAGGCG 3540
AAACTGGTAT CTGACCATAA ACCCGATGCC GATCAGATAA AACAGCTGCG CCAGCAGTTC 3600
GATACGCTGC GTGAAAAGCG GTATGAGAGC AATCCGGTGA AGCATTACAC CGATATGGGC 3660
TTCACCCATA ATAAGGCGCT GGAAGCAAAC TATGATGCGG TCAAAGCCTT TATCAATGCC 3720 TTTAAGAAAG AGCACCACGG CGTCAATCTG ACCACGCGTA CCGTACTGGA ATCACAGGGC 3780
AGTGCGGAGC TGGCGAAGAA GCTCAAGAAT ACGCTGTTGT CCCTGGACAG TGGTGAAAGT 3840
ATGAGCTTCA GCCGGTCATA TGGCGGGGGC GTCAGCACTG TCTTTGTGCC TACCCTTAGC 3900 AAGAAGGTGC CAGTTCCGGT GATCCCCGGA GCCGGCATCA CGCTGGATCG CGCCTATAAC 3960
CTGAGCTTCA GTCGTACCAG CGGCGGATTG AACGTCAGTT TTGGCCGCGA CGGCGGGGTG 4020
AGTGGTAACA TCATGGTCGC TACCGGCCAT GATGTGATGC CCTATATGAC CGGTAAGAAA 4080
ACCAGTGCAG GTAACGCCAG TGACTGGTTG AGCGCAAAAC ATAAAATCAG CCCGGACTTG 4140
CGTATCGGCG CTGCTGTGAG TGGCACCCTG CAAGGAACGC TACAAAACAG CCTGAAGTTT 4200
AAGCTGACAG AGGATGAGCT GCCTGGCTTT ATCCATGGCT TGACGCATGG CACGTTGACC 4260
CCGGCAGAAC TGTTGCAAAA GGGGATCGAA CATCAGATGA AGCAGGGCAG CAAACTGACG 4320 TTTAGCGTCG ATACCTCGGC AAATCTGGAT CTGCGTGCCG GTATCAATCT GAACGAAGAC 4380
GGCAGTAAAC CAAATGGTGT CACTGCCCGT GTTTCTGCCG GGCTAAGTGC ATCGGCAAAC 4440
CTGGCCGCCG GCTCGCGTGA ACGCAGCACC ACCTCTGGCC AGTTTGGCAG CACGACTTCG 4500
GCCAGCAATA ACCGCCCAAC CTTCCTCAAC GGGGTCGGCG CGGGTGCTAA CCTGACGGCT 4560
GCTTTAGGGG TTGCCCATTC ATCTACGCAT GAAGGGAAAC CGGTCGGGAT CTTCCCGGCA 4620 TTTACCTCGA CCAATGTTTC GGCAGCGCTG GCGCTGGATA ACCGTACCTC ACAGAGTATC 4680
AGCCTGGAAT TGAAGCGCGC GGAGCCGGTG ACCAGCAACG ATATCAGCGA GTTGACCTCC 4740
ACGCTGGGAA AACACTTTAA GGATAGCGCC ACAACGAAGA TGCTTGCCGC TCTCAAAGAG 4800
TTAGATGACG CTAAGCCCGC TGAACAACTG CATATTTTAC AGCAGCATTT CAGTGCAAAA 4860
GATGTCGTCG GTGATGAACG CTACGAGGCG GTGCGCAACC TGAAAAAACT GGTGATACGT 4920 CAACAGGCTG CGGACAGCCA CAGCATGGAA TTAGGATCTG CCAGTCACAG CACGACCTAC 4980
AATAATCTGT CGAGAATAAA TAATGACGGC ATTGTCGAGC TGCTACACAA ACATTTCGAT 5040
GCGGCATTAC CAGCAAGCAG TGCCAAACGT CTTGGTGAAA TGATGAATAA CGATCCGGCA 5100
CTGAAAGATA TTATTAAGCA GCTGCAAAGT ACGCCGTTCA GCAGCGCCAG CGTGTCGATG 5160
GAGCTGAAAG ATGGTCTGCG TGAGCAGACG GAAAAAGCAA TACTGGACGG TAAGGTCGGT 5220 CGTGAAGAAG TGGGAGTACT TTTCCAGGAT CGTAACAACT TGCGTGTTAA ATCGGTCAGC 5280
GTCAGTCAGT CCGTCAGCAA AAGCGAAGGC TTCAATACCC CAGCGCTGTT ACTGGGGACG 5340
AGCAACAGCG CTGCTATGAG CATGGAGCGC AACATCGGAA CCATTAATTT TAAATACGGC 5400
CAGGATCAGA ACACCCCACG GCGATTTACC CTGGAGGGTG GAATAGCTCA GGCTAATCCG 5460
CAGGTCGCAT CTGCGCTTAC TGATTTGAAG AAGGAAGGGC TGGAAATGAA GAGCTAA 5517
This DNA molecule is known as the dspE gene for Erwinia amylovora. This isolated DNA molecule of the present invention encodes a protein or polypeptide which elicits a plant pathogen's hypersensitive response having an amino acid sequence of SEQ. ID. No. 28 as follows: Met Glu Leu Lys Ser Leu Gly Thr Glu His Lys Ala Ala Val His Thr 1 5 10 15
Ala Ala His Asn Pro Val Gly His Gly Val Ala Leu Gin Gin Gly Ser 20 25 30
Ser Ser Ser Ser Pro Gin Asn Ala Ala Ala Ser Leu Ala Ala Glu Gly 35 40 45 Lys Asn Arg Gly Lys Met Pro Arg lie His Gin Pro Ser Thr Ala Ala 50 55 60
Asp Gly lie Ser Ala Ala His Gin Gin Lys Lys Ser Phe Ser Leu Arg 65 70 75 80
Gly Cys Leu Gly Thr Lys Lys Phe Ser Arg Ser Ala Pro Gin Gly Gin 85 90 95
Pro Gly Thr Thr His Ser Lys Gly Ala Thr Leu Arg Asp Leu Leu Ala 100 105 110
Arg Asp Asp Gly Glu Thr Gin His Glu Ala Ala Ala Pro Asp Ala Ala 115 120 125
Arg Leu Thr Arg Ser Gly Gly Val Lys Arg Arg Asn Met Asp Asp Met 130 135 140
Ala Gly Arg Pro Met Val Lys Gly Gly Ser Gly Glu Asp Lys Val Pro 145 150 155 160
Thr Gin Gin Lys Arg His Gin Leu Asn Asn Phe Gly Gin Met Arg Gin 165 170 175
Thr Met Leu Ser Lys Met Ala His Pro Ala Ser Ala Asn Ala Gly Asp 180 185 190
Arg Leu Gin His Ser Pro Pro His lie Pro Gly Ser His His Glu lie 195 200 205 Lys Glu Glu Pro Val Gly Ser Thr Ser Lys Ala Thr Thr Ala His Ala 210 215 220
Asp Arg Val Glu lie Ala Gin Glu Asp Asp Asp Ser Glu Phe Gin Gin 225 230 235 240
Leu His Gin Gin Arg Leu Ala Arg Glu Arg Glu Asn Pro Pro Gin Pro 245 250 255
Pro Lys Leu Gly Val Ala Thr Pro lie Ser Ala Arg Phe Gin Pro Lys 260 265 270
Leu Thr Ala Val Ala Glu Ser Val Leu Glu Gly Thr Asp Thr Thr Gin 275 280 285 Ser Pro Leu Lys Pro Gin Ser Met Leu Lys Gly Ser Gly Ala Gly Val 290 295 300
Thr Pro Leu Ala Val Thr Leu Asp Lys Gly Lys Leu Gin Leu Ala Pro 305 310 315 320
Asp Asn Pro Pro Ala Leu Asn Thr Leu Leu Lys Gin Thr Leu Gly Lys 325 330 335
Asp Thr Gin His Tyr Leu Ala His His Ala Ser Ser Asp Gly Ser Gin 340 345 350 His Leu Leu Leu Asp Asn Lys Gly His Leu Phe Asp lie Lys Ser Thr 355 360 365
Ala Thr Ser Tyr Ser Val Leu His Asn Ser His Pro Gly Glu lie Lys 370 375 380
Gly Lys Leu Ala Gin Ala Gly Thr Gly Ser Val Ser Val Asp Gly Lys 385 390 395 400
Ser Gly Lys lie Ser Leu Gly Ser Gly Thr Gin Ser His Asn Lys Thr 405 410 415
Met Leu Ser Gin Pro Gly Glu Ala His Arg Ser Leu Leu Thr Gly lie 420 425 430
Trp Gin His Pro Ala Gly Ala Ala Arg Pro Gin Gly Glu Ser lie Arg 435 440 445
Leu His Asp Asp Lys lie His lie Leu His Pro Glu Leu Gly Val Trp 450 455 460
Gin Ser Ala Asp Lys Asp Thr His Ser Gin Leu Ser Arg Gin Ala Asp 465 470 475 480
Gly Lys Leu Tyr Ala Leu Lys Asp Asn Arg Thr Leu Gin Asn Leu Ser 485 490 495
Asp Asn Lys Ser Ser Glu Lys Leu Val Asp Lys lie Lys Ser Tyr Ser 500 505 510
Val Asp Gin Arg Gly Gin Val Ala lie Leu Thr Asp Thr Pro Gly Arg 515 520 525 His Lys Met Ser lie Met Pro Ser Leu Asp Ala Ser Pro Glu Ser His 530 535 540 lie Ser Leu Ser Leu His Phe Ala Asp Ala His Gin Gly Leu Leu His 545 550 555 560
Gly Lys Ser Glu Leu Glu Ala Gin Ser Val Ala lie Ser His Gly Arg 565 570 575
Leu Val Val Ala Asp Ser Glu Gly Lys Leu Phe Ser Ala Ala lie Pro 580 585 590
Lys Gin Gly Asp Gly Asn Glu Leu Lys Met Lys Ala Met Pro Gin His 595 600 605 Ala Leu Asp Glu His Phe Gly His Asp His Gin He Ser Gly Phe Phe 610 615 620
His Asp Asp His Gly Gin Leu Asn Ala Leu Val Lys Asn Asn Phe Arg
625 630 635 640
Gin Gin His Ala Cys Pro Leu Gly Asn Asp His Gin Phe His Pro Gly
645 650 655
Trp Asn Leu Thr Asp Ala Leu Val lie Asp Asn Gin Leu Gly Leu His 660 665 670
His Thr Asn Pro Glu Pro His Glu lie Leu Asp Met Gly His Leu Gly 675 680 685 Ser Leu Ala Leu Gin Glu Gly Lys Leu His Tyr Phe Asp Gin Leu Thr 690 695 700
Lys Gly Trp Thr Gly Ala Glu Ser Asp Cys Lys Gin Leu Lys Lys Gly 705 710 715 720
Leu Asp Gly Ala Ala Tyr Leu Leu Lys Asp Gly Glu Val Lys Arg Leu 725 730 735 Asn He Asn Gin Ser Thr Ser Ser He Lys His Gly Thr Glu Asn Val
740 745 750
Phe Ser Leu Pro His Val Arg Asn Lys Pro Glu Pro Gly Asp Ala Leu 755 760 765
Gin Gly Leu Asn Lys Asp Asp Lys Ala Gin Ala Met Ala Val He Gly 770 775 780
Val Asn Lys Tyr Leu Ala Leu Thr Glu Lys Gly Asp He Arg Ser Phe 785 790 795 800
Gin He Lys Pro Gly Thr Gin Gin Leu Glu Arg Pro Ala Gin Thr Leu
805 810 815 Ser Arg Glu Gly He Ser Gly Glu Leu Lys Asp He His Val Asp His
820 825 830
Lys Gin Asn Leu Tyr Ala Leu Thr His Glu Gly Glu Val Phe His Gin 835 840 845
Pro Arg Glu Ala Trp Gin Asn Gly Ala Glu Ser Ser Ser Trp His Lys 850 855 860
Leu Ala Leu Pro Gin Ser Glu Ser Lys Leu Lys Ser Leu Asp Met Ser 865 870 875 880
His Glu His Lys Pro He Ala Thr Phe Glu Asp Gly Ser Gin His Gin 885 890 895
Leu Lys Ala Gly Gly Trp His Ala Tyr Ala Ala Pro Glu Arg Gly Pro 900 905 910
Leu Ala Val Gly Thr Ser Gly Ser Gin Thr Val Phe Asn Arg Leu Met 915 920 925
Gin Gly Val Lys Gly Lys Val He Pro Gly Ser Gly Leu Thr Val Lys 930 935 940
Leu Ser Ala Gin Thr Gly Gly Met Thr Gly Ala Glu Gly Arg Lys Val 945 950 955 960
Ser Ser Lys Phe Ser Glu Arg He Arg Ala Tyr Ala Phe Asn Pro Thr 965 970 975 Met Ser Thr Pro Arg Pro He Lys Asn Ala Ala Tyr Ala Thr Gin His
980 985 990
Gly Trp Gin Gly Arg Glu Gly Leu Lys Pro Leu Tyr Glu Met Gin Gly 995 1000 1005
Ala Leu He Lys Gin Leu Asp Ala His Asn Val Arg His Asn Ala Pro 1010 1015 1020
Gin Pro Asp Leu Gin Ser Lys Leu Glu Thr Leu Asp Leu Gly Glu His 1025 1030 1035 1040 Gly Ala Glu Leu Leu Asn Asp Met Lys Arg Phe Arg Asp Glu Leu Glu 1045 1050 1055
Gin Ser Ala Thr Arg Ser Val Thr Val Leu Gly Gin His Gin Gly Val 1060 1065 1070
Leu Lys Ser Asn Gly Glu He Asn Ser Glu Phe Lys Pro Ser Pro Gly 1075 1080 1085
Lys Ala Leu Val Gin Ser Phe Asn Val Asn Arg Ser Gly Gin Asp Leu 1090 1095 1100
Ser Lys Ser Leu Gin Gin Ala Val His Ala Thr Pro Pro Ser Ala Glu 1105 1110 1115 1120
Ser Lys Leu Gin Ser Met Leu Gly His Phe Val Ser Ala Gly Val Asp 1125 1130 1135
Met Ser His Gin Lys Gly Glu He Pro Leu Gly Arg Gin Arg Asp Pro 1140 1145 1150
Asn Asp Lys Thr Ala Leu Thr Lys Ser Arg Leu He Leu Asp Thr Val 1155 1160 1165
Thr He Gly Glu Leu His Glu Leu Ala Asp Lys Ala Lys Leu Val Ser 1170 1175 1180
Asp His Lys Pro Asp Ala Asp Gin He Lys Gin Leu Arg Gin Gin Phe 1185 1190 1195 1200
Asp Thr Leu Arg Glu Lys Arg Tyr Glu Ser Asn Pro Val Lys His Tyr 1205 1210 1215 Thr Asp Met Gly Phe Thr His Asn Lys Ala Leu Glu Ala Asn Tyr Asp
1220 1225 1230
Ala Val Lys Ala Phe He Asn Ala Phe Lys Lys Glu His His Gly Val 1235 1240 1245
Asn Leu Thr Thr Arg Thr Val Leu Glu Ser Gin Gly Ser Ala Glu Leu 1250 1255 1260
Ala Lys Lys Leu Lys Asn Thr Leu Leu Ser Leu Asp Ser Gly Glu Ser 1265 1270 1275 1280
Met Ser Phe Ser Arg Ser Tyr Gly Gly Gly Val Ser Thr Val Phe Val 1285 1290 1295 Pro Thr Leu Ser Lys Lys Val Pro Val Pro Val He Pro Gly Ala Gly
1300 1305 1310
He Thr Leu Asp Arg Ala Tyr Asn Leu Ser Phe Ser Arg Thr Ser Gly 1315 1320 1325
Gly Leu Asn Val Ser Phe Gly Arg Asp Gly Gly Val Ser Gly Asn He 1330 1335 1340
Met Val Ala Thr Gly His Asp Val Met Pro Tyr Met Thr Gly Lys Lys 1345 1350 1355 1360
Thr Ser Ala Gly Asn Ala Ser Asp Trp Leu Ser Ala Lys His Lys He 1365 1370 1375 Ser Pro Asp Leu Arg He Gly Ala Ala Val Ser Gly Thr Leu Gin Gly 1380 1385 1390
Thr Leu Gin Asn Ser Leu Lys Phe Lys Leu Thr Glu Asp Glu Leu Pro 1395 1400 1405
Gly Phe He His Gly Leu Thr His Gly Thr Leu Thr Pro Ala Glu Leu 1410 1415 1420 Leu Gin Lys Gly He Glu His Gin Met Lys Gin Gly Ser Lys Leu Thr 1425 1430 1435 1440
Phe Ser Val Asp Thr Ser Ala Asn Leu Asp Leu Arg Ala Gly He Asn 1445 1450 1455
Leu Asn Glu Asp Gly Ser Lys Pro Asn Gly Val Thr Ala Arg Val Ser 1460 1465 1470
Ala Gly Leu Ser Ala Ser Ala Asn Leu Ala Ala Gly Ser Arg Glu Arg 1475 1480 1485
Ser Thr Thr Ser Gly Gin Phe Gly Ser Thr Thr Ser Ala Ser Asn Asn 1490 1495 1500 Arg Pro Thr Phe Leu Asn Gly Val Gly Ala Gly Ala Asn Leu Thr Ala 1505 1510 1515 1520
Ala Leu Gly Val Ala His Ser Ser Thr His Glu Gly Lys Pro Val Gly 1525 1530 1535
He Phe Pro Ala Phe Thr Ser Thr Asn Val Ser Ala Ala Leu Ala Leu 1540 1545 1550
Asp Asn Arg Thr Ser Gin Ser He Ser Leu Glu Leu Lys Arg Ala Glu 1555 1560 1565
Pro Val Thr Ser Asn Asp He Ser Glu Leu Thr Ser Thr Leu Gly Lys 1570 1575 1580
His Phe Lys Asp Ser Ala Thr Thr Lys Met Leu Ala Ala Leu Lys Glu 1585 1590 1595 1600
Leu Asp Asp Ala Lys Pro Ala Glu Gin Leu His He Leu Gin Gin His 1605 1610 1615
Phe Ser Ala Lys Asp Val Val Gly Asp Glu Arg Tyr Glu Ala Val Arg 1620 1625 1630
Asn Leu Lys Lys Leu Val He Arg Gin Gin Ala Ala Asp Ser His Ser 1635 1640 1645
Met Glu Leu Gly Ser Ala Ser His Ser Thr Thr Tyr Asn Asn Leu Ser 1650 1655 1660 Arg He Asn Asn Asp Gly He Val Glu Leu Leu His Lys His Phe Asp 1665 1670 1675 1680
Ala Ala Leu Pro Ala Ser Ser Ala Lys Arg Leu Gly Glu Met Met Asn 1685 1690 1695
Asn Asp Pro Ala Leu Lys Asp He He Lys Gin Leu Gin Ser Thr Pro 1700 1705 1710
Phe Ser Ser Ala Ser Val Ser Met Glu Leu Lys Asp Gly Leu Arg Glu 1715 1720 1725 Gln Thr Glu Lys Ala He Leu Asp Gly Lys Val Gly Arg Glu Glu Val 1730 1735 1740
Gly Val Leu Phe Gin Asp Arg Asn Asn Leu Arg Val Lys Ser Val Ser 1745 1750 1755 1760
Val Ser Gin Ser Val Ser Lys Ser Glu Gly Phe Asn Thr Pro Ala Leu 1765 1770 1775
Leu Leu Gly Thr Ser Asn Ser Ala Ala Met Ser Met Glu Arg Asn He 1780 1785 1790
Gly Thr He Asn Phe Lys Tyr Gly Gin Asp Gin Asn Thr Pro Arg Arg 1795 1800 1805
Phe Thr Leu Glu Gly Gly He Ala Gin Ala Asn Pro Gin Val Ala Ser 1810 1815 1820
Ala Leu Thr Asp Leu Lys Lys Glu Gly Leu Glu Met Lys Ser 1825 1830 1835
This protein or polypeptide is about 198 kDa and has a pl of 8.98. The present invention relates to an isolated DNA molecule having a nucleotide sequence of SEQ. ID. No. 29 as follows:
ATGACATCGT CACAGCAGCG GGTTGAAAGG TTTTTACAGT ATTTCTCCGC CGGGTGTAAA 60 ACGCCCATAC ATCTGAAAGA CGGGGTGTGC GCCCTGTATA ACGAACAAGA TGAGGAGGCG 120
GCGGTGCTGG AAGTACCGCA ACACAGCGAC AGCCTGTTAC TACACTGCCG AATCATTGAG 180
GCTGACCCAC AAACTTCAAT AACCCTGTAT TCGATGCTAT TACAGCTGAA TTTTGAAATG 240
GCGGCCATGC GCGGCTGTTG GCTGGCGCTG GATGAACTGC ACAACGTGCG TTTATGTTTT 300
CAGCAGTCGC TGGAGCATCT GGATGAAGCA AGTTTTAGCG ATATCGTTAG CGGCTTCATC 360 GAACATGCGG CAGAAGTGCG TGAGTATATA GCGCAATTAG ACGAGAGTAG CGCGGCATAA 420
This is known as the dspF gene. This isolated DNA molecule of the present invention encodes a hypersensitive response elicitor protein or polypeptide having an amino acid sequence of SEQ. ID. No. 30 as follows:
Met Thr Ser Ser Gin Gin Arg Val Glu Arg Phe Leu Gin Tyr Phe Ser 1 5 10 15 Ala Gly Cys Lys Thr Pro He His Leu Lys Asp Gly Val Cys Ala Leu
20 25 30
Tyr Asn Glu Gin Asp Glu Glu Ala Ala Val Leu Glu Val Pro Gin His 35 40 45
Ser Asp Ser Leu Leu Leu His Cys Arg He He Glu Ala Asp Pro Gin 50 55 60 Thr Ser He Thr Leu Tyr Ser Met Leu Leu Gin Leu Asn Phe Glu Met 65 70 75 80
Ala Ala Met Arg Gly Cys Trp Leu Ala Leu Asp Glu Leu His Asn Val 85 90 95
Arg Leu Cys Phe Gin Gin Ser Leu Glu His Leu Asp Glu Ala Ser Phe 100 105 110 Ser Asp He Val Ser Gly Phe He Glu His Ala Ala Glu Val Arg Glu 115 120 125
Tyr He Ala Gin Leu Asp Glu Ser Ser Ala Ala 130 135
This protein or polypeptide is about 16 kDa and has a pi of 4.45.
The hypersensitive response elicitor polypeptide or protein derived from Pseudomonas syringae has an amino acid sequence corresponding to SEQ. ID. No. 31 as follows:
Met Gin Ser Leu Ser Leu Asn Ser Ser Ser Leu Gin Thr Pro Ala Met 1 5 10 15
Ala Leu Val Leu Val Arg Pro Glu Ala Glu Thr Thr Gly Ser Thr Ser 20 25 30 Ser Lys Ala Leu Gin Glu Val Val Val Lys Leu Ala Glu Glu Leu Met
35 40 45
Arg Asn Gly Gin Leu Asp Asp Ser Ser Pro Leu Gly Lys Leu Leu Ala 50 55 60
Lys Ser Met Ala Ala Asp Gly Lys Ala Gly Gly Gly He Glu Asp Val 65 70 75 80
He Ala Ala Leu Asp Lys Leu He His Glu Lys Leu Gly Asp Asn Phe 85 90 95
Gly Ala Ser Ala Asp Ser Ala Ser Gly Thr Gly Gin Gin Asp Leu Met 100 105 110 Thr Gin Val Leu Asn Gly Leu Ala Lys Ser Met Leu Asp Asp Leu Leu
115 120 125
Thr Lys Gin Asp Gly Gly Thr Ser Phe Ser Glu Asp Asp Met Pro Met 130 135 140
Leu Asn Lys He Ala Gin Phe Met Asp Asp Asn Pro Ala Gin Phe Pro 145 150 155 160
Lys Pro Asp Ser Gly Ser Trp Val Asn Glu Leu Lys Glu Asp Asn Phe 165 170 175
Leu Asp Gly Asp Glu Thr Ala Ala Phe Arg Ser Ala Leu Asp He He 180 185 190 Gly Gin Gin Leu Gly Asn Gin Gin Ser Asp Ala Gly Ser Leu Ala Gly 195 200 205
Thr Gly Gly Gly Leu Gly Thr Pro Ser Ser Phe Ser Asn Asn Ser Ser 210 215 220 Val Met Gly Asp Pro Leu He Asp Ala Asn Thr Gly Pro Gly Asp Ser 225 230 235 240
Gly Asn Thr Arg Gly Glu Ala Gly Gin Leu He Gly Glu Leu He Asp 245 250 255
Arg Gly Leu Gin Ser Val Leu Ala Gly Gly Gly Leu Gly Thr Pro Val 260 265 270
Asn Thr Pro Gin Thr Gly Thr Ser Ala Asn Gly Gly Gin Ser Ala Gin 275 280 285
Asp Leu Asp Gin Leu Leu Gly Gly Leu Leu Leu Lys Gly Leu Glu Ala 290 295 300 Thr Leu Lys Asp Ala Gly Gin Thr Gly Thr Asp Val Gin Ser Ser Ala 305 310 315 320
Ala Gin He Ala Thr Leu Leu Val Ser Thr Leu Leu Gin Gly Thr Arg 325 330 335
Asn Gin Ala Ala Ala 340
This hypersensitive response elicitor polypeptide or protein has a molecular weight of 34-35 kDa. It is rich in glycine (about 13.5%) and lacks cysteine and tyrosine. Further information about the hypersensitive response elicitor derived from Pseudomonas syringae is found in He, S. Y., H. C. Huang, and A. Collmer, "Pseudomonas syringae pv. syringae HarpinPss: a Protein that is Secreted via the Hrp Pathway and Elicits the Hypersensitive Response in Plants," Cell 73:1255-1266 (1993), which is hereby incorporated by reference. The DNA molecule encoding the hypersensitive response elicitor from Pseudomonas syringae has a nucleotide sequence corresponding to SEQ. ID. No. 32 as follows:
ATGCAGAGTC TCAGTCTTAA CAGCAGCTCG CTGCAAACCC CGGCAATGGC CCTTGTCCTG 60
GTACGTCCTG AAGCCGAGAC GACTGGCAGT ACGTCGAGCA AGGCGCTTCA GGAAGTTGTC 120 GTGAAGCTGG CCGAGGAACT GATGCGCAAT GGTCAACTCG ACGACAGCTC GCCATTGGGA 180
AAACTGTTGG CCAAGTCGAT GGCCGCAGAT GGCAAGGCGG GCGGCGGTAT TGAGGATGTC 240
ATCGCTGCGC TGGACAAGCT GATCCATGAA AAGCTCGGTG ACAACTTCGG CGCGTCTGCG 300 GACAGCGCCT CGGGTACCGG ACAGCAGGAC CTGATGACTC AGGTGCTCAA TGGCCTGGCC 360
AAGTCGATGC TCGATGATCT TCTGACCAAG CAGGATGGCG GGACAAGCTT CTCCGAAGAC 420
GATATGCCGA TGCTGAACAA GATCGCGCAG TTCATGGATG ACAATCCCGC ACAGTTTCCC 480
AAGCCGGACT CGGGCTCCTG GGTGAACGAA CTCAAGGAAG ACAACTTCCT TGATGGCGAC 540 GAAACGGCTG CGTTCCGTTC GGCACTCGAC ATCATTGGCC AGCAACTGGG TAATCAGCAG 600
AGTGACGCTG GCAGTCTGGC AGGGACGGGT GGAGGTCTGG GCACTCCGAG CAGTTTTTCC 660
AACAACTCGT CCGTGATGGG TGATCCGCTG ATCGACGCCA ATACCGGTCC CGGTGACAGC 720
GGCAATACCC GTGGTGAAGC GGGGCAACTG ATCGGCGAGC TTATCGACCG TGGCCTGCAA 780
TCGGTATTGG CCGGTGGTGG ACTGGGCACA CCCGTAAACA CCCCGCAGAC CGGTACGTCG 840 GCGAATGGCG GACAGTCCGC TCAGGATCTT GATCAGTTGC TGGGCGGCTT GCTGCTCAAG 900
GGCCTGGAGG CAACGCTCAA GGATGCCGGG CAAACAGGCA CCGACGTGCA GTCGAGCGCT 960
GCGCAAATCG CCACCTTGCT GGTCAGTACG CTGCTGCAAG GCACCCGCAA TCAGGCTGCA 1020
GCCTGA 1026
Another potentially suitable hypersensitive response elicitor from
Pseudomonas syringae is disclosed in U.S. Patent Application Serial No. 09/120,817, which is hereby incorporated by reference. The protein has a nucleotide sequence of SEQ. ID. No. 33 as follows:
TCCACTTCGC TGATTTTGAA ATTGGCAGAT TCATAGAAAC GTTCAGGTGT GGAAATCAGG 60
CTGAGTGCGC AGATTTCGTT GATAAGGGTG TGGTACTGGT CATTGTTGGT CATTTCAAGG 120
CCTCTGAGTG CGGTGCGGAG CAATACCAGT CTTCCTGCTG GCGTGTGCAC ACTGAGTCGC 180
AGGCATAGGC ATTTCAGTTC CTTGCGTTGG TTGGGCATAT AAAAAAAGGA ACTTTTAAAA 240
ACAGTGCAAT GAGATGCCGG CAAAACGGGA ACCGGTCGCT GCGCTTTGCC ACTCACTTCG 300 AGCAAGCTCA ACCCCAAACA TCCACATCCC TATCGAACGG ACAGCGATAC GGCCACTTGC 360
TCTGGTAAAC CCTGGAGCTG GCGTCGGTCC AATTGCCCAC TTAGCGAGGT AACGCAGCAT 420
GAGCATCGGC ATCACACCCC GGCCGCAACA GACCACCACG CCACTCGATT TTTCGGCGCT 480
AAGCGGCAAG AGTCCTCAAC CAAACACGTT CGGCGAGCAG AACACTCAGC AAGCGATCGA 540
CCCGAGTGCA CTGTTGTTCG GCAGCGACAC ACAGAAAGAC GTCAACTTCG GCACGCCCGA 600 CAGCACCGTC CAGAATCCGC AGGACGCCAG CAAGCCCAAC GACAGCCAGT CCAACATCGC 660
TAAATTGATC AGTGCATTGA TCATGTCGTT GCTGCAGATG CTCACCAACT CCAATAAAAA 720
GCAGGACACC AATCAGGAAC AGCCTGATAG CCAGGCTCCT TTCCAGAACA ACGGCGGGCT 780 CGGTACACCG TCGGCCGATA GCGGGGGCGG CGGTACACCG GATGCGACAG GTGGCGGCGG 840 CGGTGATACG CCAAGCGCAA CAGGCGGTGG CGGCGGTGAT ACTCCGACCG CAACAGGCGG 900
TGGCGGCAGC GGTGGCGGCG GCACACCCAC TGCAACAGGT GGCGGCAGCG GTGGCACACC 960
CACTGCAACA GGCGGTGGCG AGGGTGGCGT AACACCGCAA ATCACTCCGC AGTTGGCCAA 1020 CCCTAACCGT ACCTCAGGTA CTGGCTCGGT GTCGGACACC GCAGGTTCTA CCGAGCAAGC 1080
CGGCAAGATC AATGTGGTGA AAGACACCAT CAAGGTCGGC GCTGGCGAAG TCTTTGACGG 1140
CCACGGCGCA ACCTTCACTG CCGACAAATC TATGGGTAAC GGAGACCAGG GCGAAAATCA 1200
GAAGCCCATG TTCGAGCTGG CTGAAGGCGC TACGTTGAAG AATGTGAACC TGGGTGAGAA 1260
CGAGGTCGAT GGCATCCACG TGAAAGCCAA AAACGCTCAG GAAGTCACCA TTGACAACGT 1320 GCATGCCCAG AACGTCGGTG AAGACCTGAT TACGGTCAAA GGCGAGGGAG GCGCAGCGGT 1380
CACTAATCTG AACATCAAGA ACAGCAGTGC CAAAGGTGCA GACGACAAGG TTGTCCAGCT 1440
CAACGCCAAC ACTCACTTGA AAATCGACAA CTTCAAGGCC GACGATTTCG GCACGATGGT 1500
TCGCACCAAC GGTGGCAAGC AGTTTGATGA CATGAGCATC GAGCTGAACG GCATCGAAGC 1560
TAACCACGGC AAGTTCGCCC TGGTGAAAAG CGACAGTGAC GATCTGAAGC TGGCAACGGG 1620 CAACATCGCC ATGACCGACG TCAAACACGC CTACGATAAA ACCCAGGCAT CGACCCAACA 1680
CACCGAGCTT TGAATCCAGA CAAGTAGCTT GAAAAAAGGG GGTGGACTC 1729
This DNA molecule is known as the dspE gene for Pseudomonas syringae. This isolated DNA molecule of the present invention encodes a protein or polypeptide which elicits a plant pathogen's hypersensitive response having an amino acid sequence of SEQ. ID. No. 34 as follows:
Met Ser He Gly He Thr Pro Arg Pro Gin Gin Thr Thr Thr Pro Leu
1 5 10 15
Asp Phe Ser Ala Leu Ser Gly Lys Ser Pro Gin Pro Asn Thr Phe Gly 20 25 30
Glu Gin Asn Thr Gin Gin Ala He Asp Pro Ser Ala Leu Leu Phe Gly 35 40 45
Ser Asp Thr Gin Lys Asp Val Asn Phe Gly Thr Pro Asp Ser Thr Val 50 55 60
Gin Asn Pro Gin Asp Ala Ser Lys Pro Asn Asp Ser Gin Ser Asn He 65 70 75 80 Ala Lys Leu He Ser Ala Leu He Met Ser Leu Leu Gin Met Leu Thr
85 90 95 Asn Ser Asn Lys Lys Gin Asp Thr Asn Gin Glu Gin Pro Asp Ser Gin 100 105 110
Ala Pro Phe Gin Asn Asn Gly Gly Leu Gly Thr Pro Ser Ala Asp Ser 115 120 125
Gly Gly Gly Gly Thr Pro Asp Ala Thr Gly Gly Gly Gly Gly Asp Thr 130 135 140 Pro Ser Ala Thr Gly Gly Gly Gly Gly Asp Thr Pro Thr Ala Thr Gly 145 150 155 160
Gly Gly Gly Ser Gly Gly Gly Gly Thr Pro Thr Ala Thr Gly Gly Gly 165 170 175
Ser Gly Gly Thr Pro Thr Ala Thr Gly Gly Gly Glu Gly Gly Val Thr 180 185 190
Pro Gin He Thr Pro Gin Leu Ala Asn Pro Asn Arg Thr Ser Gly Thr 195 200 205
Gly Ser Val Ser Asp Thr Ala Gly Ser Thr Glu Gin Ala Gly Lys He 210 215 220 Asn Val Val Lys Asp Thr He Lys Val Gly Ala Gly Glu Val Phe Asp 225 230 235 240
Gly His Gly Ala Thr Phe Thr Ala Asp Lys Ser Met Gly Asn Gly Asp 245 250 255
Gin Gly Glu Asn Gin Lys Pro Met Phe Glu Leu Ala Glu Gly Ala Thr 260 265 270
Leu Lys Asn Val Asn Leu Gly Glu Asn Glu Val Asp Gly He His Val 275 280 285
Lys Ala Lys Asn Ala Gin Glu Val Thr He Asp Asn Val His Ala Gin 290 295 300 Asn Val Gly Glu Asp Leu He Thr Val Lys Gly Glu Gly Gly Ala Ala
305 310 315 320
Val Thr Asn Leu Asn He Lys Asn Ser Ser Ala Lys Gly Ala Asp Asp 325 330 335
Lys Val Val Gin Leu Asn Ala Asn Thr His Leu Lys He Asp Asn Phe 340 345 350
Lys Ala Asp Asp Phe Gly Thr Met Val Arg Thr Asn Gly Gly Lys Gin 355 360 365
Phe Asp Asp Met Ser He Glu Leu Asn Gly He Glu Ala Asn His Gly 370 375 380 Lys Phe Ala Leu Val Lys Ser Asp Ser Asp Asp Leu Lys Leu Ala Thr 385 390 395 400
Gly Asn He Ala Met Thr Asp Val Lys His Ala Tyr Asp Lys Thr Gin 405 410 415 Ala Ser Thr Gin His Thr Glu Leu 420
This protein or polypeptide is about 42.9 kDa.
The hypersensitive response elicitor polypeptide or protein derived from Pseudomonas solanacearum has an amino acid sequence corresponding to SEQ. ID. No. 35 as follows:
Met Ser Val Gly Asn He Gin Ser Pro Ser Asn Leu Pro Gly Leu Gin 1 5 10 15
Asn Leu Asn Leu Asn Thr Asn Thr Asn Ser Gin Gin Ser Gly Gin Ser 20 25 30
Val Gin Asp Leu He Lys Gin Val Glu Lys Asp He Leu Asn He He 35 40 45
Ala Ala Leu Val Gin Lys Ala Ala Gin Ser Ala Gly Gly Asn Thr Gly 50 55 60 Asn Thr Gly Asn Ala Pro Ala Lys Asp Gly Asn Ala Asn Ala Gly Ala
65 70 75 80
Asn Asp Pro Ser Lys Asn Asp Pro Ser Lys Ser Gin Ala Pro Gin Ser 85 90 95
Ala Asn Lys Thr Gly Asn Val Asp Asp Ala Asn Asn Gin Asp Pro Met 100 105 110
Gin Ala Leu Met Gin Leu Leu Glu Asp Leu Val Lys Leu Leu Lys Ala 115 120 125
Ala Leu His Met Gin Gin Pro Gly Gly Asn Asp Lys Gly Asn Gly Val 130 135 140 Gly Gly Ala Asn Gly Ala Lys Gly Ala Gly Gly Gin Gly Gly Leu Ala
145 150 155 160
Glu Ala Leu Gin Glu He Glu Gin He Leu Ala Gin Leu Gly Gly Gly 165 170 175
Gly Ala Gly Ala Gly Gly Ala Gly Gly Gly Val Gly Gly Ala Gly Gly 180 185 190
Ala Asp Gly Gly Ser Gly Ala Gly Gly Ala Gly Gly Ala Asn Gly Ala 195 200 205
Asp Gly Gly Asn Gly Val Asn Gly Asn Gin Ala Asn Gly Pro Gin Asn 210 215 220 Ala Gly Asp Val Asn Gly Ala Asn Gly Ala Asp Asp Gly Ser Glu Asp 225 230 235 240
Gin Gly Gly Leu Thr Gly Val Leu Gin Lys Leu Met Lys He Leu Asn 245 250 255 Ala Leu Val Gin Met Met Gin Gin Gly Gly Leu Gly Gly Gly Asn Gin
260 265 270
Ala Gin Gly Gly Ser Lys Gly Ala Gly Asn Ala Ser Pro Ala Ser Gly 275 280 285
Ala Asn Pro Gly Ala Asn Gin Pro Gly Ser Ala Asp Asp Gin Ser Ser 290 295 300
Gly Gin Asn Asn Leu Gin Ser Gin He Met Asp Val Val Lys Glu Val 305 310 315 320
Val Gin He Leu Gin Gin Met Leu Ala Ala Gin Asn Gly Gly Ser Gin 325 330 335 Gin Ser Thr Ser Thr Gin Pro Met
340
It is encoded by a DNA molecule having a nucleotide sequence corresponding SEQ. ID. No. 36 as follows:
ATGTCAGTCG GAAACATCCA GAGCCCGTCG AACCTCCCGG GTCTGCAGAA CCTGAACCTC 60 AACACCAACA CCAACAGCCA GCAATCGGGC CAGTCCGTGC AAGACCTGAT CAAGCAGGTC 120
GAGAAGGACA TCCTCAACAT CATCGCAGCC CTCGTGCAGA AGGCCGCACA GTCGGCGGGC 180
GGCAACACCG GTAACACCGG CAACGCGCCG GCGAAGGACG GCAATGCCAA CGCGGGCGCC 240
AACGACCCGA GCAAGAACGA CCCGAGCAAG AGCCAGGCTC CGCAGTCGGC CAACAAGACC 300
GGCAACGTCG ACGACGCCAA CAACCAGGAT CCGATGCAAG CGCTGATGCA GCTGCTGGAA 360 GACCTGGTGA AGCTGCTGAA GGCGGCCCTG CACATGCAGC AGCCCGGCGG CAATGACAAG 420
GGCAACGGCG TGGGCGGTGC CAACGGCGCC AAGGGTGCCG GCGGCCAGGG CGGCCTGGCC 480
GAAGCGCTGC AGGAGATCGA GCAGATCCTC GCCCAGCTCG GCGGCGGCGG TGCTGGCGCC 540
GGCGGCGCGG GTGGCGGTGT CGGCGGTGCT GGTGGCGCGG ATGGCGGCTC CGGTGCGGGT 600
GGCGCAGGCG GTGCGAACGG CGCCGACGGC GGCAATGGCG TGAACGGCAA CCAGGCGAAC 660 GGCCCGCAGA ACGCAGGCGA TGTCAACGGT GCCAACGGCG CGGATGACGG CAGCGAAGAC 720
CAGGGCGGCC TCACCGGCGT GCTGCAAAAG CTGATGAAGA TCCTGAACGC GCTGGTGCAG 780
ATGATGCAGC AAGGCGGCCT CGGCGGCGGC AACCAGGCGC AGGGCGGCTC GAAGGGTGCC 840
GGCAACGCCT CGCCGGCTTC CGGCGCGAAC CCGGGCGCGA ACCAGCCCGG TTCGGCGGAT 900 GATCAATCGT CCGGCCAGAA CAATCTGCAA TCCCAGATCA TGGATGTGGT GAAGGAGGTC 960 GTCCAGATCC TGCAGCAGAT GCTGGCGGCG CAGAACGGCG GCAGCCAGCA GTCCACCTCG 1020 ACGCAGCCGA TGTAA 1035
Further information regarding the hypersensitive response elicitor polypeptide or protein derived from Pseudomonas solanacearum is set forth in Arlat, M., F. Van Gijsegem, J. C. Huet, J. C. Pemollet, and C. A. Boucher, "PopAl, a Protein which Induces a Hypersensitive-like Response in Specific Petunia Genotypes, is Secreted via the Hrp Pathway of Pseudomonas solanacearum," EMBO J. 13:543-533 (1994), which is hereby incorporated by reference.
The hypersensitive response elicitor polypeptide or protein from Xanthomonas campestris pv. glycines has an amino acid sequence corresponding to SEQ. ID. No. 37 as follows:
Thr Leu He Glu Leu Met He Val Val Ala He He Ala He Leu Ala 1 5 10 15
Ala He Ala Leu Pro Ala Tyr Gin Asp Tyr 20 25
This sequence is an amino terminal sequence having only 26 residues from the hypersensitive response elicitor polypeptide or protein of Xanthomonas campestris pv. glycines. It matches with fimbrial subunit proteins determined in other Xanthomonas campestris pathovars.
The hypersensitive response elicitor polypeptide or protein from Xanthomonas campestris pv. pelargonii is heat stable, protease sensitive, and has a molecular weight of 20 kDa. It includes an amino acid sequence corresponding to SEQ. ID. No. 38 as follows:
Ser Ser Gin Gin Ser Pro Ser Ala Gly Ser Glu Gin Gin Leu Asp Gin 1 5 10 15
Leu Leu Ala Met 20 Isolation of Erwinia carotovora hypersensitive response elictor protein or polypeptide is described in Cui et al., "The RsmA Mutants of Erwinia carotovora subsp. carotovora Strain Ecc71 Overexpress hrp NECC and Elicit a Hypersensitive Reaction-like Response in Tobacco Leaves," MPMI. 9(7):565-73 (1996), which is hereby incorporated by reference. The hypersensitive response elicitor protein or polypeptide of Erwinia stewartii is set forth in Ahmad et al., "Harpin is Not Necessary for the Pathogenicity of Erwinia stewartii on Maize," 8th Int'l. Cong. Molec. Plant-Microbe Interact.. July 14-19, 1996 and Ahmad, et al, "Harpin is Not Necessary for the Pathogenicity of Erwinia stewartii on Maize," Ann. Mtg. Am. Phytopath. Soc. July 27-31, 1996, which are hereby incorporated by reference. Hypersensitive response elicitor proteins or polypeptides from Phytophthora parasitica, Phytophthora cryptogea, Phytophthora cinnamoni,
Phytophthora capsici, Phytophthora megasperma, and Phytophora citrophthora are described in Kaman, et al., "Extracellular Protein Elicitors from Phytophthora: Most Specificity and Induction of Resistance to Bacterial and Fungal Phytopathogens," Molec. Plant-Microbe Interact. 6(l):15-25 (1993), Ricci et al., "Structure and Activity of Proteins from Pathogenic Fungi Phytophthora Eliciting Necrosis and
Acquired Resistance in Tobacco," Eur. J. Biochem.. 183:555-63 (1989), Ricci et al., "Differential Production of Parasiticein, and Elicitor of Necrosis and Resistance in Tobacco, by Isolates of Phytophthora parasitica," Plant Path. 41:298-307 (1992), Baillreul et al, "A New Elicitor of the Hypersensitive Response in Tobacco: A Fungal Glycoprotein Elicits Cell Death, Expression of Defence Genes, Production of Salicylic Acid, and Induction of Systemic Acquired Resistance," Plant J.. 8(4):551-60 (1995), and Bonnet et al., "Acquired Resistance Triggered by Elicitors in Tobacco and Other Plants," Eur. J. Plant Path.. 102:181-92 (1996), which are hereby incorporated by reference. Another hypersensitive response elicitor in accordance with the present invention is from Clavibacter michiganensis subsp. sepedonicus which is fully described in U.S. Patent Application Serial No. 09/136,625, which is hereby incorporated by reference.
The above elicitors are exemplary. Other elicitors can be identified by growing fungi or bacteria that elicit a hypersensitive response under conditions which genes encoding an elicitor are expressed. Cell-free preparations from culture supernatants can be tested for elicitor activity (i.e. local necrosis) by using them to infiltrate appropriate plant tissues.
Fragments of the above hypersensitive response elicitor polypeptides or proteins as well as fragments of full length elicitors from other pathogens are encompassed by the present invention.
Suitable fragments can be produced by several means. In the first, subclones of the gene encoding a known elicitor protein are produced by conventional molecular genetic manipulation by subcloning gene fragments. The subclones then are expressed in vitro or in vivo in bacterial cells to yield a smaller protein or peptide that can be tested for elicitor activity according to the procedure described below.
As an alternative, fragments of an elicitor protein can be produced by digestion of a full-length elicitor protein with proteolytic enzymes like chymotrypsin or Staphylococcus proteinase A, or trypsin. Different proteolytic enzymes are likely to cleave elicitor proteins at different sites based on the amino acid sequence of the elicitor protein. Some of the fragments that result from proteolysis may be active elicitors of resistance.
In another approach, based on knowledge of the primary structure of the protein, fragments of the elicitor protein gene may be synthesized by using the PCR technique together with specific sets of primers chosen to represent particular portions of the protein. These then would be cloned into an appropriate vector for expression of a truncated peptide or protein.
Chemical synthesis can also be used to make suitable fragments. Such a synthesis is carried out using known amino acid sequences for the elicitor being produced. Alternatively, subjecting a full length elicitor to high temperatures and pressures will produce fragments. These fragments can then be separated by conventional procedures (e.g., chromatography, SDS-PAGE).
An example of suitable fragments of a hypersensitive response elicitor which do not elicit a hypersensitive response include fragments of the Erwinia amylovora hypersensitive response elicitor. Suitable fragments include a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, or an internal fragment of the amino acid sequence of SEQ. ID. No. 23. The C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23 can span the following amino acids of SEQ. ID. No. 23: 169 and 403, 210 and 403, 267 and 403, or 343 and 403. The internal fragment of the amino acid sequence of SEQ. ID. No. 23 can span the following amino acids of SEQ. ID. No. 23: 105 and 179, 137 and 166, 121 and 150, or 137 and 156. Other suitable fragments can be identified in accordance with the present invention.
Another example of a useful fragment of a hypersensitive response elicitor which fragment does not itself elicit a hypersensitive response is the protein fragment containing amino acids 190 to 294 of the amino acid sequence (SEQ. ID. No. 31) for the Pseudomonas syringae pv. syringae hypersensitive response elicitor. This fragment is useful in imparting disease resistance and enhancing plant growth. Yet another example of a useful fragment of a hypersensitive response elicitor is the peptide having an amino acid sequence corresponding to SEQ. ID. No. 39. This peptide is derived from the hypersensitive response eliciting glycoprotein of Phytophthora megasperma and enhances plant growth. Variants may be made by, for example, the deletion or addition of amino acids that have minimal influence on the properties, secondary structure, and hydropathic nature of the polypeptide. For example, a polypeptide may be conjugated to a signal (or leader) sequence at the N-terminal end of the protein which co- translationally or post-translationally directs transfer of the protein. The polypeptide may also be conjugated to a linker or other sequence for ease of synthesis, purification, or identification of the polypeptide.
The fragment of the present invention is preferably in isolated form (i.e. separated from its host organism) and more preferably produced in purified form (preferably at least about 60%, more preferably 80%, pure) by conventional techniques. Typically, the fragment of the present invention is produced but not secreted into the growth medium of recombinant host cells. Alternatively, the protein or polypeptide of the present invention is secreted into growth medium. In the case of unsecreted protein, to isolate the protein fragment, the host cell (e.g., E. coli) carrying a recombinant plasmid is propagated, lysed by sonication, heat, or chemical treatment, and the homogenate is centrifuged to remove bacterial debris. The supernatant is then subjected to heat treatment and the fragment is separated by centrifugation. The supernatant fraction containing the fragment is subjected to gel filtration in an appropriately sized dextran or polyacrylamide column to separate the fragment. If necessary, the protein fraction may be further purified by ion exchange or HPLC.
The DNA molecule encoding the fragment of the hypersensitive response elicitor polypeptide or protein can be incorporated in cells using conventional recombinant DNA technology. Generally, this involves inserting the DNA molecule into an expression system to which the DNA molecule is heterologous (i.e. not normally present). The heterologous DNA molecule is inserted into the expression system or vector in proper sense orientation and correct reading frame. The vector contains the necessary elements for the transcription and translation of the inserted protein-coding sequences.
U.S. Patent No. 4,237,224 to Cohen and Boyer, which is hereby incorporated by reference, describes the production of expression systems in the form of recombinant plasmids using restriction enzyme cleavage and ligation with DNA ligase. These recombinant plasmids are then introduced by means of transformation and replicated in unicellular cultures including procaryotic organisms and eucaryotic cells grown in tissue culture.
Recombinant genes may also be introduced into viruses, such as vaccina virus. Recombinant viruses can be generated by transfection of plasmids into cells infected with virus. Suitable vectors include, but are not limited to, the following viral vectors such as lambda vector system gtl 1, gt WES.tB, Charon 4, and plasmid vectors such as pBR322, pBR325, pACYC177, pACYC1084, pUC8, pUC9, pUC18, pUC19, pLG339, pR290, pKC37, pKClOl, SV 40, pBluescript II SK +/- or KS +/- (see "Stratagene Cloning Systems" Catalog (1993) from Stratagene, La Jolla, Calif, which is hereby incorporated by reference), pQE, pIH821, pGEX, pET series (see F.W.
Studier et. al., "Use of T7 RNA Polymerase to Direct Expression of Cloned Genes," Gene Expression Technology vol. 185 (1990), which is hereby incorporated by reference), and any derivatives thereof. Recombinant molecules can be introduced into cells via transformation, particularly transduction, conjugation, mobilization, or electroporation. The DNA sequences are cloned into the vector using standard cloning procedures in the art, as described by Sambrook et al, Molecular Cloning: A Laboratory Manual. Cold Springs Laboratory, Cold Springs Harbor, New York (1989), which is hereby incorporated by reference.
A variety of host- vector systems may be utilized to express the protein- encoding sequence(s). Primarily, the vector system must be compatible with the host cell used. Host- vector systems include but are not limited to the following: bacteria transformed with bacteriophage DNA, plasmid DNA, or cosmid DNA; microorganisms such as yeast containing yeast vectors; mammalian cell systems infected with virus (e.g., vaccinia virus, adenovirus, etc.); insect cell systems infected with virus (e.g., baculovirus); and plant cells infected by bacteria. The expression elements of these vectors vary in their strength and specificities. Depending upon the host- vector system utilized, any one of a number of suitable transcription and translation elements can be used.
Different genetic signals and processing events control many levels of gene expression (e.g., DNA transcription and messenger RNA (mRNA) translation). Transcription of DNA is dependent upon the presence of a promotor which is a DNA sequence that directs the binding of RNA polymerase and thereby promotes mRNA synthesis. The DNA sequences of eucaryotic promotors differ from those of procaryotic promotors. Furthermore, eucaryotic promotors and accompanying genetic signals may not be recognized in or may not function in a procaryotic system, and, further, procaryotic promotors are not recognized and do not function in eucaryotic cells.
Similarly, translation of mRNA in procaryotes depends upon the presence of the proper procaryotic signals which differ from those of eucaryotes. Efficient translation of mRNA in procaryotes requires a ribosome binding site called the Shine-Dalgarno ("SD") sequence on the mRNA. This sequence is a short nucleotide sequence of mRNA that is located before the start codon, usually AUG, which encodes the amino-terminal methionine of the protein. The SD sequences are complementary to the 3 '-end of the 16S rRNA (ribosomal RNA) and probably promote binding of mRNA to ribosomes by duplexing with the rRNA to allow correct positioning of the ribosome. For a review on maximizing gene expression, see Roberts and Lauer, Methods in Enzymology. 68:473 (1979), which is hereby incorporated by reference. Promotors vary in their "strength" (i.e. their ability to promote transcription). For the purposes of expressing a cloned gene, it is desirable to use strong promotors in order to obtain a high level of transcription and, hence, expression of the gene. Depending upon the host cell system utilized, any one of a number of suitable promotors may be used. For instance, when cloning in E. coli, its bacteriophages, or plasmids, promotors such as the T7 phage promotor, lac promotor, trp promotor, recA promotor, ribosomal RNA promotor, the PR and PL promotors of coliphage lambda and others, including but not limited, to lacOY5, ompF, bla, Ipp, and the like, may be used to direct high levels of transcription of adjacent DNA segments. Additionally, a hybrid trp-lac\JY5 (tac) promotor or other E. coli promotors produced by recombinant DNA or other synthetic DNA techniques may be used to provide for transcription of the inserted gene.
Bacterial host cell strains and expression vectors may be chosen which inhibit the action of the promotor unless specifically induced. In certain operations, the addition of specific inducers is necessary for efficient transcription of the inserted DNA. For example, the lac operon is induced by the addition of lactose or IPTG (isopropylthio-beta-D-galactoside). A variety of other operons, such as trp, pro, etc., are under different controls.
Specific initiation signals are also required for efficient gene transcription and translation in procaryotic cells. These transcription and translation initiation signals may vary in "strength" as measured by the quantity of gene specific messenger RNA and protein synthesized, respectively. The DNA expression vector, which contains a promotor, may also contain any combination of various "strong" transcription and/or translation initiation signals. For instance, efficient translation in E. coli requires an SD sequence about 7-9 bases 5' to the initiation codon ("ATG") to provide a ribosome binding site. Thus, any SD-ATG combination that can be utilized by host cell ribosomes may be employed. Such combinations include but are not limited to the SD-ATG combination from the cro gene or the N gene of coliphage lambda, or from the E. coli tryptophan Ε, D, C, B or A genes. Additionally, any SD- ATG combination produced by recombinant DΝA or other techniques involving incorporation of synthetic nucleotides may be used. Once the isolated DNA molecule encoding the fragment of a hypersensitive response elicitor polypeptide or protein has been cloned into an expression system, it is ready to be incorporated into a host cell. Such incorporation can be carried out by the various forms of transformation noted above, depending upon the vector/host cell system. Suitable host cells include, but are not limited to, bacteria, virus, yeast, mammalian cells, insect, plant, and the like.
The present invention further relates to methods of imparting disease resistance to plants, enhancing plant growth, and/or effecting insect control for plants. These methods involve applying the fragment of a hypersensitive response elicitor polypeptide or protein which does not elicit a hypersensitive response in a non- infectious form to all or part of a plant or a plant seed under conditions effective for the fragment to impart disease resistance, enhance growth, and/or control insects. Alternatively, these fragments of a hypersensitive response elicitor protein or polypeptide can be applied to plants such that seeds recovered from such plants themselves are able to impart disease resistance in plants, to enhance plant growth, and/or to effect insect control.
As an alternative to applying a fragment of a hypersensitive response elicitor polypeptide or protein to plants or plant seeds in order to impart disease resistance in plants, to effect plant growth, and/or to control insects on the plants or plants grown from the seeds, transgenic plants or plant seeds can be utilized. When utilizing transgenic plants, this involves providing a transgenic plant transformed with a DNA molecule encoding a fragment of a hypersensitive response elicitor polypeptide or protein, which fragment does not elicit a hypersensitive response, and growing the plant under conditions effective to permit that DNA molecule to impart disease resistance to plants, to enhance plant growth, and/or to control insects.
Alternatively, a transgenic plant seed transformed with a DNA molecule encoding a fragment of a hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response can be provided and planted in soil. A plant is then propagated from the planted seed under conditions effective to permit that DNA molecule to impart disease resistance to plants, to enhance plant growth, and/or to control insects. The embodiment of the present invention where the hypersensitive response elicitor polypeptide or protein is applied to the plant or plant seed can be carried out in a number of ways, including: 1) application of an isolated fragment or 2) application of bacteria which do not cause disease and are transformed with a gene encoding the fragment. In the latter embodiment, the fragment can be applied to plants or plant seeds by applying bacteria containing the DNA molecule encoding the fragment of the hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response. Such bacteria must be capable of secreting or exporting the fragment so that the fragment can contact plant or plant seed cells. In these embodiments, the fragment is produced by the bacteria inplanta or on seeds or just prior to introduction of the bacteria to the plants or plant seeds. The methods of the present invention can be utilized to treat a wide variety of plants or their seeds to impart disease resistance, enhance growth, and/or control insects. Suitable plants include dicots and monocots. More particularly, useful crop plants can include: alfalfa, rice, wheat, barley, rye, cotton, sunflower, peanut, corn, potato, sweet potato, bean, pea, chicory, lettuce, endive, cabbage, brussel sprout, beet, parsnip, turnip, cauliflower, broccoli, radish, spinach, onion, garlic, eggplant, pepper, celery, carrot, squash, pumpkin, zucchini, cucumber, apple, pear, melon, citrus, strawberry, grape, raspberry, pineapple, soybean, tobacco, tomato, sorghum, and sugarcane. Examples of suitable ornamental plants are: Arabidopsis thaliana, Saintpaulia, petunia, pelargonium, poinsettia, chrysanthemum, carnation, and zinnia.
With regard to the use of the fragments of the hypersensitive response elicitor protein or polypeptide of the present invention in imparting disease resistance, absolute immunity against infection may not be conferred, but the severity of the disease is reduced and symptom development is delayed. Lesion number, lesion size, and extent of sporulation of fungal pathogens are all decreased. This method of imparting disease resistance has the potential for treating previously untreatable diseases, treating diseases systemically which might not be treated separately due to cost, and avoiding the use of infectious agents or environmentally harmful materials. The method of imparting pathogen resistance to plants in accordance with the present invention is useful in imparting resistance to a wide variety of pathogens including viruses, bacteria, and fungi. Resistance, ter alia, to the following viruses can be achieved by the method of the present invention: Tobacco mosaic virus and Tomato mosaic virus. Resistance, inter alia, to the following bacteria can also be imparted to plants in accordance with present invention: Pseudomonas solanacearum, Pseudomonas syringae pv. tabaci, and Xanthamonas campestris pv. pelargonii. Plants can be made resistant, inter alia, to the following fungi by use of the method of the present invention: Fusarium oxysporum and Phytophthora infestans.
With regard to the use of the fragments of the hypersensitive response elicitor protein or polypeptide of the present invention to enhance plant growth, various forms of plant growth enhancement or promotion can be achieved. This can occur as early as when plant growth begins from seeds or later in the life of a plant. For example, plant growth according to the present invention encompasses greater yield, increased quantity of seeds produced, increased percentage of seeds germinated, increased plant size, greater biomass, more and bigger fruit, earlier fruit coloration, and earlier fruit and plant maturation. As a result, the present invention provides significant economic benefit to growers. For example, early germination and early maturation permit crops to be grown in areas where short growing seasons would otherwise preclude their growth in that locale. Increased percentage of seed germination results in improved crop stands and more efficient seed use. Greater yield, increased size, and enhanced biomass production allow greater revenue generation from a given plot of land.
Another aspect of the present invention is directed to effecting any form of insect control for plants. For example, insect control according to the present invention encompasses preventing insects from contacting plants to which the hypersensitive response elicitor has been applied, preventing direct insect damage to plants by feeding injury, causing insects to depart from such plants, killing insects proximate to such plants, interfering with insect larval feeding on such plants, preventing insects from colonizing host plants, preventing colonizing insects from releasing phytotoxins, etc. The present invention also prevents subsequent disease damage to plants resulting from insect infection. The present invention is effective against a wide variety of insects. European corn borer is a major pest of corn (dent and sweet corn) but also feeds on over 200 plant species including green, wax, and lima beans and edible soybeans, peppers, potato, and tomato plus many weed species. Additional insect larval feeding pests which damage a wide variety of vegetable crops include the following: beet army worm, cabbage looper, corn ear worm, fall army worm, diamondback moth, cabbage root maggot, onion maggot, seed corn maggot, pickleworm (melonworm), pepper maggot, tomato pinworm, and maggots. Collectively, this group of insect pests represents the most economically important group of pests for vegetable production worldwide.
The method of the present invention involving application of the fragment of a hypersensitive response elicitor polypeptide or protein, which fragment does not elicit a hypersensitive response, can be carried out through a variety of procedures when all or part of the plant is treated, including leaves, stems, roots, propagules (e.g., cuttings), etc. This may (but need not) involve infiltration of the fragment of the hypersensitive response elicitor polypeptide or protein into the plant. Suitable application methods include high or low pressure spraying, injection, and leaf abrasion proximate to when elicitor application takes place. When treating plant seeds or propagules (e.g., cuttings), in accordance with the application embodiment of the present invention, the fragment of the hypersensitive response elicitor protein or polypeptide, in accordance with present invention, can be applied by low or high pressure spraying, coating, immersion, or injection. Other suitable application procedures can be envisioned by those skilled in the art provided they are able to effect contact of the fragment with cells of the plant or plant seed. Once treated with the fragment of the hypersensitive response elicitor of the present invention, the seeds can be planted in natural or artificial soil and cultivated using conventional procedures to produce plants. After plants have been propagated from seeds treated in accordance with the present invention, the plants may be treated with one or more applications of the fragment of the hypersensitive response elicitor protein or polypeptide or whole elicitors to impart disease resistance to plants, to enhance plant growth, and/or to control insects on the plants. The fragment of the hypersensitive response elicitor polypeptide or protein, in accordance with the present invention, can be applied to plants or plant seeds alone or in a mixture with other materials. Alternatively, the fragment can be applied separately to plants with other materials being applied at different times. A composition suitable for treating plants or plant seeds in accordance with the application embodiment of the present invention contains a fragment of a hypersensitive response elicitor polypeptide or protein which fragment does not elicit a hypersensitive response in a carrier. Suitable carriers include water, aqueous solutions, slurries, or dry powders. In this embodiment, the composition contains greater than 500 nM of the fragment.
Although not required, this composition may contain additional additives including fertilizer, insecticide, fungicide, nematacide, and mixtures thereof. Suitable fertilizers include (NH4)2NO3. An example of a suitable insecticide is Malathion. Useful fungicides include Captan. Other suitable additives include buffering agents, wetting agents, coating agents, and abrading agents. These materials can be used to facilitate the process of the present invention. In addition, the hypersensitive response eliciting fragment can be applied to plant seeds with other conventional seed formulation and treatment materials, including clays and polysaccharides. In the alternative embodiment of the present invention involving the use of transgenic plants and transgenic seeds, a fragment of a hypersensitive response elicitor need not be applied topically to the plants or seeds. Instead, transgenic plants transformed with a DNA molecule encoding such a fragment are produced according to procedures well known in the art The vector described above can be microinjected directly into plant cells by use of micropipettes to transfer mechanically the recombinant DNA. Crossway, Mol. Gen. Genetics. 202:179-85 (1985), which is hereby incorporated by reference. The genetic material may also be transferred into the plant cell using polyethylene glycol. Krens, et al., Nature. 296:72-74 (1982), which is hereby incorporated by reference.
Another approach to transforming plant cells with a gene which imparts resistance to pathogens is particle bombardment (also known as biolistic transformation) of the host cell. This can be accomplished in one of several ways. The first involves propelling inert or biologically active particles at cells. This technique is disclosed in U.S. Patent Nos. 4,945,050, 5,036,006, and 5,100,792, all to Sanford et al, which are hereby incorporated by reference. Generally, this procedure involves propelling inert or biologically active particles at the cells under conditions effective to penetrate the outer surface of the cell and to be incorporated within the interior thereof. When inert particles are utilized, the vector can be introduced into the cell by coating the particles with the vector containing the heterologous DNA. Alternatively, the target cell can be surrounded by the vector so that the vector is carried into the cell by the wake of the particle. Biologically active particles (e.g., dried bacterial cells containing the vector and heterologous DNA) can also be propelled into plant cells.
Yet another method of introduction is fusion of protoplasts with other entities, either minicells, cells, lysosomes, or other fusible lipid-surfaced bodies. Fraley, et al., Proc. Natl. Acad. Sci. USA. 79: 1859-63 (1982), which is hereby incorporated by reference.
The DNA molecule may also be introduced into the plant cells by electroporation. Fromm et al., Proc. Natl. Acad. Sci. USA. 82:5824 (1985), which is hereby incorporated by reference. In this technique, plant protoplasts are electroporated in the presence of plasmids containing the expression cassette. Electrical impulses of high field strength reversibly permeabilize biomembranes allowing the introduction of the plasmids. Electroporated plant protoplasts reform the cell wall, divide, and regenerate.
Another method of introducing the DNA molecule into plant cells is to infect a plant cell with Agrobacterium tumefaciens or A. rhizogenes previously transformed with the gene. Under appropriate conditions known in the art, the transformed plant cells are grown to form shoots or roots, and develop further into plants. Generally, this procedure involves inoculating the plant tissue with a suspension of bacteria and incubating the tissue for 48 to 72 hours on regeneration medium without antibiotics at 25 -28 °C .
Agrobacterium is a representative genus of the Gram-negative family Rhizobiaceae. Its species are responsible for crown gall (A. tumefaciens) and hairy root disease (A. rhizogenes). The plant cells in crown gall tumors and hairy roots are induced to produce amino acid derivatives known as opines, which are catabolized only by the bacteria. The bacterial genes responsible for expression of opines are a convenient source of control elements for chimeric expression cassettes. In addition, assaying for the presence of opines can be used to identify transformed tissue.
Heterologous genetic sequences can be introduced into appropriate plant cells, by means of the Ti plasmid of A. tumefaciens or the Ri plasmid of A. rhizogenes. The Ti or Ri plasmid is transmitted to plant cells on infection by Agrobacterium and is stably integrated into the plant genome. J. Schell, Science. 237:1176-83 (1987), which is hereby incorporated by reference.
After transformation, the transformed plant cells must be regenerated. Plant regeneration from cultured protoplasts is described in Evans et al., Handbook of Plant Cell Cultures. Vol. 1 : (MacMillan Publishing Co., New York, 1983); and Vasil I.R. (ed.), Cell Culture and Somatic Cell Genetics of Plants. Acad. Press, Orlando, Vol. I, 1984, and Vol. Ill (1986), which are hereby incorporated by reference.
It is known that practically all plants can be regenerated from cultured cells or tissues, including but not limited to, all major species of sugarcane, sugar beets, cotton, fruit trees, and legumes. Means for regeneration vary from species to species of plants, but generally a suspension of transformed protoplasts or a petri plate containing transformed explants is first provided. Callus tissue is formed and shoots may be induced from callus and subsequently rooted. Alternatively, embryo formation can be induced in the callus tissue. These embryos germinate as natural embryos to form plants. The culture media will generally contain various amino acids and hormones, such as auxin and cytokinins. It is also advantageous to add glutamic acid and proline to the medium, especially for such species as corn and alfalfa. Efficient regeneration will depend on the medium, on the genotype, and on the history of the culture. If these three variables are controlled, then regeneration is usually reproducible and repeatable. After the expression cassette is stably incorporated in transgenic plants, it can be transferred to other plants by sexual crossing. Any of a number of standard breeding techniques can be used, depending upon the species to be crossed.
Once transgenic plants of this type are produced, the plants themselves can be cultivated in accordance with conventional procedure with the presence of the gene encoding the fragment of the hypersensitive response elicitor resulting in disease resistance, enhanced plant growth, and/or control of insects on the plant. Alternatively, transgenic seeds or propagules (e.g., cuttings) are recovered from the transgenic plants. The seeds can then be planted in the soil and cultivated using conventional procedures to produce transgenic plants. The transgenic plants are propagated from the planted transgenic seeds under conditions effective to impart disease resistance to plants, to enhance plant growth, and/or to control insects. While not wishing to be bound by theory, such disease resistance, growth enhancement, and/or insect control may be RNA mediated or may result from expression of the polypeptide or protein fragment.
When transgenic plants and plant seeds are used in accordance with the present invention, they additionally can be treated with the same materials as are used to treat the plants and seeds to which a fragment of a hypersensitive response elicitor in accordance with the present invention is applied. These other materials, including a fragment of a hypersensitive response elicitor in accordance with the present invention, can be applied to the transgenic plants and plant seeds by the above-noted procedures, including high or low pressure spraying, injection, coating, and immersion. Similarly, after plants have been propagated from the transgenic plant seeds, the plants may be treated with one or more applications of the fragment of a hypersensitive response elicitor in accordance with the present invention to impart disease resistance, enhance growth, and/or control insects. Such plants may also be treated with conventional plant treatment agents (e.g., insecticides, fertilizers, etc.).
EXAMPLES
Example 1 - Bacterial Strains and Plasmids
Escherichia coli strains used in the following examples include DH5α and BL21(DE3) purchased from Gibco BRL (Grand Island, NY.) and Stratagene (La Jolla, CA), respectively. The pET28(b) vector was purchased from Novagen (Madison, WI). Eco DH5α/2139 contained the complete hrpN gene. The 2139 construct was produced by D. Bauer at Cornell University. The hrpN gene was cleaved from the 2139 plasmid by restriction enzyme digestion with Hindlll, then purified from an agarose gel to serve as the DNA template for PCR synthesis of truncated hrpN clones. These clones were subsequently inserted into the (His)6 vector pET28(b) which contained a Kanr gene for selection of transformants.
Example 2 - DNA Manipulation
Restriction enzymes were obtained from Boehringer Mannheim (Indianapolis, IN) or Gibco BRL. T4 DNA ligase, Calf Intestinal Alkaline Phosphatase (CIAP), and PCR Supermix™ were obtained from Gibco BRL. The QIAprep Spin Miniprep Kit, the Qiagen Plasmid Mini Kit, and the QIAquick PCR Purification Kit were purchased from Qiagen (Hilden, Germany). The PCR primers were synthesized by Lofstrand Labs Limited (Gaithersburg, MD). The oligopeptides were synthesized by Bio-Synthesis, Inc. (Lewisville, TX). All DNA manipulations such as plasmid isolation, restriction enzyme digestion, DNA ligation, and PCR were performed according to standard techniques (Sambrook, et al., Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989)) or protocols provided by the manufacturer.
Example 3 - Fragmentation of hrpN Gene A series of N-terminal and C-terminal truncated hrpN genes and internal fragments were generated via PCR (Fig. 1). The full length hrpN gene was used as the DNA template and 3' and 5' primers were designed for each truncated clone (Fig. 2). The 3' primers contained an Ndel enzyme cutting site which contained the start codon ATG (methionine) and the 5' primers contained the stop codon TAA and a Hindlll enzyme cutting site for ligation into the pET28(b) vector. PCR was carried out in 0.5 ml tubes in a GeneAmp™ 9700 (Perkin-Elmer, Foster City, CA). 45 μl of Supermix™ (Life Technology, Gaithersburg, MD) were mixed with 20 pmoles of each pair of DNA primers, 10 ng of full length harpin DNA, and deionized H2O to a final volume of 50 μl. After heating the mixture at 95°C for 2 min, the PCR was performed for 30 cycles at 94°C for 1 min, 58°C for 1 min and 72°C for 1.5 min. The PCR products were verified on a 6% TBE gel (Novex, San Diego, CA). Amplified DNA was purified with the QIAquick PCR purification kit, digested with Nde I and Hind III at 37°C for 5 hours, extracted once with phenol:chloroform:isoamylalcohol (25:25:1) and precipitated with ethanol. 5 μg of pET28(b) vector DNA were digested with 15 units of Nde I and 20 units of Hind III at 37°C for 3 hours followed with CIAP treatment to reduce the background resulting from incomplete single enzyme digestion. Digested vector DNA was purified with the QIAquick PCR purification kit and directly used for ligation. Ligation was carried out at 14-16°C for 5-12 hours in a 15 μl mixture containing ca. 200 ng of digested pET28(b), 30 ng of targeted PCR fragment, and 1 unit T4 DNA ligase. 5 - 7.5 μl of ligation solution were added to 100 μl of DH5α competent cells in a 15 ml Falcon tube and incubated on ice for 30 min. After a heat shock at 42°C for 45 seconds, 0.9 ml SOC solution or 0.45 ml LB media were added to each tube and incubated at 37°C for 1 hour. 20, 100, and 200 μl of transformed cells were placed onto LB agar with 30 μg/ml of kanamycin and incubated at 37°C overnight. Single colonies were transferred to 3 ml LB-media and incubated overnight at 37°C. Plasmid DNA was prepared from 2 ml of culture with the QIAprep Miniprep kit (QIAGEN, Hilden, Germany). The DNA from the transformed cells was analyzed by restriction enzyme digestion or partial sequencing to verify the success of the transformations. Plasmids with the desired DNA sequence were transferred into the BL21 strain using the standard chemical transformation method as indicated above. A clone containing the full length harpin protein in the pET28(b) vector was generated as a positive control, and a clone with only the pET28(b) vector was generated as a negative control.
Example 4 - Expression of Hypersensitive Response Elicitor Truncated Proteins
Escherichia coli BL21(DE3) strains containing the hrpN clones were grown in Luria broth medium (5 g/L Difco Yeast extract, 10 g/L Difco Tryptone, 5 g/L NaCl, and 1 mM NaOH) containing 30 μg/ml of kanamycin at 37°C overnight. The bacteria were then inoculated into 100 volumes of the same medium and grown at 37°C to an OD620 of 0.6-0.8. The bacteria were then inoculated into 250 volumes of the same medium and grown at 37°C to an OD62o of ca. 0.3 or 0.6-0.8. One milli molar IPTG was then added and the cultures grown at 19°C overnight (ca. 18 hours). Not all of the clones were successfully expressed using this strategy. Several of the clones had to be grown in Terrific broth (12 g/L Bacto Tryptone, 24 g/L Bacto yeast, 0.4% glycerol, 0.17 M KH2PO4, and 0.72 K2HPO4), and/or grown at 37°C after IPTG induction, and/or harvested earlier than overnight (Table 1).
Table 1 : Expression of hypersensitive response elicitor truncated proteins
Figure imgf000049_0001
Example 5 - Small Scale Purification of Hypersensitive Response Elicitor Truncated Proteins (Verification of Expression)
A 50 ml culture of a hrpN clone was grown as above to induce expression of the truncated protein. Upon harvesting of the culture, 1.5 ml of the cell suspension were centrifuged at 14,000 rpm for 5 minutes, re-suspended in urea lysis buffer (8 M urea, 0.1 M Na2HPO4, and 0.01 M Tris - pH 8.0), incubated at room temperature for 10 minutes, then centrifuged again at 14,000 rpm for 10 minutes, and the supernatant saved. A 50 μl aliquot of a 50% slurry of an equilibrated (His)6- binding nickel agarose resin was added to the supernatant and mixed at 4°C for one hour. The nickel agarose was then washed three times with urea washing buffer (8 M urea, 0.1 M Na2HPO4, and 0.01 M Tris ~ pH 6.3), centrifuging at 5,000 rpm for five minutes between washings. The protein was eluted from the resin with 50 μl of urea elution buffer (8 M urea, 0.1 M Na2HPO4, 0.01 M Tris, and 0.1 M EDTA ~ pH 6.3). The eluate was run on a 4-20%, a 16%), or a 10-20%) Tris-Glycine pre-cast gel depending upon the size of the truncated protein to verify the expression.
Example 6 - Induction of HR in Tobacco
A 1.5 ml aliquot from the 50 ml cultures grown for small scale purification of the truncated proteins was centrifuged at 14,000 rpm for four minutes and re-suspended in an equal volume of 5 mM potassium phosphate buffer, pH 6.8. The cell suspension was sonicated for ca. 30 seconds then diluted 1:2 and 1:10 with phosphate buffer. Both dilutions plus the neat cell lysate were infiltrated into the fourth to ninth leaves of 10-15 leaf tobacco plants by making a hole in single leaf panes and infiltrating the bacterial lysate into the intercellular leaf space using a syringe without a needle. The HR response was recorded 24-48 hr post infiltration. Tobacco (Nicotiana tabacum v. Xanthi) seedlings were grown in an environmental chamber at 20-25°C with a photoperiod of 12-h light /12-h dark and ca. 40%) RH. Cell lysate was used for the initial HR assays (in order to screen the truncated proteins for HR activity) as the small scale urea purification yielded very little protein which was denatured due to the purification process.
Example 7 - Large Scale Native Purification of Hypersensitive Response Elicitor Truncated Proteins for Comprehensive Biological Activity Assays
Six 500 ml cultures of a hrpN clone were grown as described earlier to induce expression of the truncated protein. Upon harvesting of the culture, the cells were centrifuged at 7,000 rpm for 5 minutes, re-suspended in imidazole lysis buffer (5 mM imidazole, 0.5 M NaCl, 20 mM Tris) plus Triton X-100 at 0.05% and lysozyme at 0.1 mg/ml, incubated at 30°C for 15 minutes, sonicated for two minutes, centrifuged again at 15,000 rpm for 20 minutes, and the supernatant was saved. A 4 ml aliquot of a 50% slurry of an equilibrated (His)6-binding nickel agarose resin was added to the supernatant and mixed at 4°C for ca. four hours. The nickel agarose was then washed three times with imidazole washing buffer (20 mM imidazole, 0.5 M NaCl, and 20 mM Tris), centrifuging at 5,000 rpm for five minutes between washings, then placed in a disposable chromatography column. The column was centrifuged at 1100 rpm for one minute to remove any residual wash buffer and then the protein was eluted from the resin with 4 ml of imidazole elution buffer (1 M imidazole, 0.5 M NaCl, and 20 mM Tris) by incubating the column with the elution buffer for ten minutes at room temperature and then centrifuging the column at 1100 φm for one minute. The eluate was run on a 4-20%, a 16%, or a 10-20%) Tris-Glycine pre-cast gel depending upon the size of the truncated protein to verify the expression. The concentration of the proteins was determined by comparison of the protein bands with a standard protein in the Mark 12 molecular weight marker.
Example 8 - Large Scale Urea Purification of Hypersensitive Response Elicitor Truncated Proteins For Comprehensive Biological Activity Assay
The procedure was the same as the large scale native purification except that urea lysis buffer, washing buffer, and elution buffer were used, and the cells were not sonicated as in the native purification. After purification, the protein was renatured by dialyzing against lower and lower concentrations of urea over an eight hour period, then dialyzing overnight against 10 mM Tris/20 mM NaCl. The renaturing process caused the N-terminal proteins to precipitate. The precipitated 1- 168 protein was solubilized by the addition of 100 mM Tris-HCl at pH 10.4 then heating the protein at 30°C for ca. one hour. The concentration of the protein was determined by comparison of the protein bands with a standard protein in the Mark 12 molecular weight marker. The 1-75 and 1-104 protein fragments were not successfully solubilized using this strategy so they were sonicated in 100 mM Tris- HCl at pH 10.4 to solubilize as much of the protein as possible and expose the active sites of the protein for the biological activity assays. Example 9 - Induction of Growth Enhancement (GE)
Sixty tomato (Lycopersicon spp. cv. Marglobe) seeds were soaked overnight in 10 and 20 μg/ml of the truncated protein diluted with 5mM potassium phosphate buffer, pH 6.8. The next morning, the sixty seeds were sewn in three pots and 12-15 days later and again 18-20 days later the heights of the 10 tallest tomato plants per pot were measured and compared with the heights of the control plants treated only with phosphate buffer. Analyses were done on the heights to determine if there was a significant difference in the height of the plants treated with the truncated proteins compared with the buffer control, and thereby determine whether the proteins induced growth enhancement.
Example 10 - Induction of Systemic Acquired Resistance (SAR)
Three tobacco (Nicotiana tabacum cv. Xanthi) plants with 8-12 leaves (ca. 75 day old plants) were used in the assay. One leaf of the tobacco plants was covered up and the rest of the leaves were sprayed with ca. 50 ml of a 20 μg/ml solution of the truncated proteins diluted with 5mM potassium phosphate buffer. Five to seven days later two leaves (the unsprayed leaf and the sprayed leaf opposite and just above the unsprayed leaf) were inoculated with 20 μl of a 1.8 μg/ml solution of TMV along with a pinch of diatomaceous earth by rubbing the mixture along the top surface of the leaves. The TMV entered the plants through tiny lesions made by the diatomaceous earth. Ca. 3-4 days post TMV inolucation, the number of TMV lesions was counted on both leaves compared with the number of lesions on the negative control buffer treated leaves. Analyses were done to determine the efficacy of reducing the number of TMV lesions by the protein fragments compared to the buffer control. Percentage of efficacy was calculated as: Reduction in TMV lesions (% efficacy) = 100 x (1 - mean # of lesions on treated leaves/mean # of lesions on buffer control leaves). Example 11 - Expression of Hypersensitive Response Elicitor Truncated Proteins
The small scale expression and purification of the fragment proteins was done to screen for expression and HR activity (Table 2).
Table 2
Expression and HR activity of hypersensitive response elicitor truncated proteins
(small scale screening)
Figure imgf000053_0001
All of the cloned fragment proteins were expressed at varying levels except for three small fragments (amino acids 169-209, 150-209, and 150-180). Fragments 210-403 and 267-403 were expressed very well, yielding a high concentration of protein from a small scale purification, resulting in a substantial protein band on SDS gel electrophoresis. Other fragments (such as a.a. 1-168 and 1-104) produced much less protein, resulting in faint protein bands upon electrophoresis. It was difficult to determine whether fragment 343-403, the smallest C-terminal protein, was expressed, as there were several background proteins apparent on the gel, in addition to the suspected 343-403 protein. The positive and negative control proteins, consisting of the full length hypersensitive response elicitor protein and only background proteins, respectively, were tested for expression and HR activity as well.
The large scale expression and purification of the fragment proteins was done to determine the level of expression and titer of the HR activity (Table 3).
Table 3
Expression level and HR titer of hypersensitive response elicitor truncated proteins
(large sale purification)
Figure imgf000054_0001
The truncated proteins deemed to be the most important in characterizing the hypersensitive response elicitor were chosen for large scale expression. The positive control (full length hypersensitive response elicitor) was expressed at a relatively high level at 3.7 mg/ml. All of the C-terminal proteins were expressed at relatively high levels from 2-5 mg/ml, except for fragment 343-403 as discussed earlier. The N-terminal fragments were expressed very well also; however, during the purification process, the protein precipitated and very little was resolubilized. The concentrations in Table 3 reflect only the solubilized protein. The internal fragments were expressed in the range of 2-3.6 mg/ml. It was extremely difficult to determine the concentration of fragment 105-168 (it was suspected that the concentration was much higher than indicated), as the protein bands on the SDS gel were large, but poorly stained. The negative control contained several background proteins as expected, but no obviously induced dominant protein.
Example 12 - Induction of HR in Tobacco
The full length positive control protein elicited HR down to only 5-
7μg/ml. The negative control (pET 28) imidazole purified "protein" - which contained only background proteins - elicited an HR response down to the 1 :2 dilution, which lowered the sensitivity of the assay as the 1 :1 and 1 :2 dilutions could not be used. This false HR was likely due to an affinity of the imidazole used in the purification process to bind to one or several of the background proteins, thereby not completely dialyzing out. Imidazole at a concentration of ca. 60 mM did elicit a false HR response.
One definitive domain encompassing a small internal region of the protein from a.a. 137-180 (SEQ. ID. No. 23), a mere 44 a.a, is identified as the smallest HR domain. The other potential HR domain is thought to be located in the N-terminus of the protein from a.a. 1-104 (possibly a.a. 1-75) (SEQ. ID. No. 23). It was difficult to confirm or narrow down the N-terminus HR domain due to the difficulties encountered in purifying these fragment proteins. The N-terminus fragment proteins had to be purified with urea as no protein was recovered when the native purification process was used. Consequently, these proteins precipitated during the renaturing process and were difficult or nearly impossible to get back into solution, thereby making it hard to run the proteins through the HR assay, as only soluble protein is able to elicit HR. Difficulty narrowing the N-terminus HR domain was only compounded by the fact that the negative control elicited false HR at the low dilution levels thereby reducing the sensitivity of the assay.
Surprisingly, when the internal HR domain was cleaved between a.a. 168 and 169 (fragments 76-168 and 105-168) (SEQ. ID. No. 23) the fragment lost its HR activity. This suggests that the HR activity of fragment 1-168 (SEQ. ID. No. 23) should not be attributed to the internal HR domain, but rather to some other domain, leading to the assumption that there was likely a second HR domain to be found in the N-terminal region of the protein. However, as discussed earlier it was difficult to confirm this assumption. The hypersensitive response elicitor C-terminus (a.a. 210-403 (SEQ. ID. No. 23)) did not contain an HR domain. It did not elicit HR at a detectable level using the current HR assay. Even the large C-terminal fragment from a.a. 169-403 (SEQ. ID. No. 23) did not elicit HR even though it contained part of the internal HR domain. As stated above, cleaving the protein between amino acids 168 and 169 (SEQ. ID. No. 23) causes a loss of HR activity.
Because some of the small cloned proteins with 61 a.a. or less were not expressed, several oligopeptides were synthesized with 30 a.a. to narrow down the functional region of the internal HR domain. The oligopeptides were synthesized within the range of a.a. 121-179 (SEQ. ID. No. 23). However, these oligos did not elicit HR. It was not expected that there would be an HR from oligos 137-166, 121- 150, and 137-156 (SEQ. ID. No. 23) as these fragments did not contain the imperative amino acids 168 and 169 (SEQ. ID. No. 23). It was expected that the oligo 150-179 (SEQ. ID. No. 23) would elicit an HR. It is possible that 30 a.a. is too small for the protein to elicit any activity due to a lack of folding and, therefore, a lack of binding or that during the synthesis of the peptides important amino acids were missed (either in the process, or simply by the choice of which 30 amino acids to synthesize) and, therefore, the fragments would not be able to elicit HR.
Example 13 - Induction of Plant Growth Enhancement (PGE)
The C-terminal fragments enhanced the growth of tomato by 9% to 21%. The N-terminal fragments enhanced the growth of tomato by 4% to 13%). The internal fragments enhanced growth by 9% to 20%>. The 76-209 fragment enhanced growth by 18% at a concentration of 60 μg/ml, but not at the typical 20 μg/ml. This was attributed to the inaccuracy of the quantification process (Table 4). Table 4
Figure imgf000057_0001
*A height greater than 10% above the buffer control was necessary to pass the PGE assay.
The oligopeptides enhanced growth from 7.4% to 17.3% (Table 5).
Table 5
Figure imgf000057_0002
The data suggests that there is more than one PGE domain, although the C-terminal and internal domains appear to be dominant over the N-terminal domain, as the N- terminal fragments enhanced growth the least amount.
Example 14 - Induction of Systemic Acquired Resistance (SAR) All of the hypersensitive response elicitor fragments tested to date appear to have 60% efficacy or greater, except for the oligopeptide 137-156 (Tables 5 and 6). Table 6
Figure imgf000058_0001
These data suggest that there are multiple SAR domains within the protein.
Example 15 - Relationship Between HR, PGE, and SAR
It is clear that the hypersensitive response activity is separable from the plant growth enhancement activity. The C-terminal fragments clearly enhance the growth of tomato by ca. 20% at a concentration of only 20 μg/ml, but these same fragments were not able to elicit HR in tobacco, even at higher concentrations than 200 μg/ml. The SAR activity also appears to be separable from the HR activity. This finding is highly significant for future work on transgenic applications of the hypersensitive response elicitor technology. The fragments that induce PGE and/or SAR but do not elicit HR will be imperative for this technology, as constitutive expression of even low levels of an HR elicitor might kill a plant.
Example 16 - Non-HR Eliciting Fragments Derived from the Hypersensitive
Response Elicitor from Pseudomonas syringae pv. syringae Induce Resistance in Tobacco to TMV and Promote the Growth of Tomato
To test whether non-HR eliciting fragments derived from HrpZ, the hypersensitive response elicitor from Pseudomonas syringae pv. syringae, is able to induce disease resistance, several fragment constructs were made and the expressed fragment proteins were tested for HR elicitation and disease resistance induction in tobacco and growth promotion in tomato.
The following segments of hrpZ, the gene encoding the hypersensitive response elicitor from Pseudomonas syringae pv. syringae, were amplified by PCR using Pfu Turbo (Stratagene): Regions coding for amino acids 152-190, aa 152-294, aa 190-294, aa 301-341, and full length HrpZ (aa 1-341). The DNA fragments were cloned into pCAL-n (Stratagene) to create C-terminal fusion proteins to the calmodulin-binding peptide. pCAL-n was chosen, because the fusion protein could be easily and gently purified on calmodulin resin. The DNA was transformed into E coli DH5oc, and the correct clones were identified. The clones were then transferred to E. coli BLR DΕ3 for protein expression. The bacteria were grown in Terrific Broth to an OD620 of 0.8-1.0. Protein expression was then induced with IPTG and the bacteria were incubated for an additional 3 h. All of the HrpZ fragments were able to be expressed this way. Amino acid fragments 152-294 and 190-294 were chosen for further analysis and characterization. It was expected that the fragment 152-294 contained a domain that elicited the HR, while fragment 190-294 contained no domain that elicited the HR. The cultures were spun down, and the bacteria resuspended in 40 ml of 10 mM Tris pH 8.0. Twenty μl of antifoam and 40 μl of 200 mM PMSF were added, and the bacteria was sonicated to break open the cells. The bacterial debris was removed by centrifugation, and the supernatant was placed in a boiling water bath for 10 min. The precipitate was removed by centrifugation and the supernatant, a crude protein preparation, was retained for tests.
Fifteen μl of each supernatant was run on a gel and stained to determine if the protein was present. It was estimated that about five times as much of the 152-294 fragment was present as the 190-294 fragment. Several dilutions of each preparation were infiltrated into tobacco leaves on two plants for HR tests (Table 7). As shown in Table 7, the 152-294 fragment elicited an HR, but the 190- 294 fragment did not. Table 7 HR test results of HrpZ fragments
HrpZ Fragment Dilution of Fragment Preparation3
L2 5 iι25 1 :125
152-294 +,+b +,+ +,+
190-294 -.- a The preparations were diluted with MilliQ water. bThe results are indicated for each of two plants. +, HR; -, no HR.
The fragment preparations were then tested for inducing resistance to TMV and for growth enhancement. Due to the difference in concentration of the HrpZ fragments, the 152-294 preparation was diluted 40-fold and the 190-294 preparation was diluted 8-fold. The results showed that the 190-294 aa fragment reduced the number of TMV lesions by 85% in comparison to buffer controls (Table 8). In contrast, the 152-294 aa fragment reduced the number of TMV lesions by only 55%. As also shown in Table 8, plants treated with the 152-294 aa fragment grew 4.64%o more than buffer treated plants, while plants treated with the 190-294 aa fragment grew 2.62% more than the buffer treated plants.
Table 8 HR test, TMV, and PGE test results
HrpZ Fragment HR elicitation3 TMV (% efficacy^ PGE(% > buffer hf)c 152-294 + 54.64 4.64
190-294 - 85.25 2.62 a+, elicits HR in tobacco leaves; -, no HR in tobacco leaves. b% reduction in TMV lesions in unsprayed leaf of tobacco. ° % greater height than buffer sprayed plants.
The results of these tests show that amino acids 152-190 appear to be involved in HR elicitation, because their removal eliminated the ability to elicit the HR. Both fragment preparations achieved disease control and growth enhancement. Thus, the ability to elicit the HR is not the determining factor for reduction in TMV infection and growth enhancement. Example 17 - Use of 13 Amino Acid Peptide Derived from Phytophthora megasperma Stimulates Tomato Seedling Growth
Parsley leaves develop a typical resistance reaction against the soybean pathogen Phytophthora megasperma comprising hypersensitive cell death, defense related gene activation, and phytoalexin formulation. Several years ago, a 42 kDa glycoprotein elicitor was purified from the fungal culture filtrate of Phytophthora megasperma (Parker et al., "An Extracellular Glycoprotein from Phytophthora megasperma f.sp. glycinea Elicits Phytoalexin Synthesis in Cultured Parsley Cells and Protoplasts," Mol. Plant Microbe Interact. 4:19-27 (1991), which is hereby incorporated by reference). Then, an oligopeptide of 13 amino acid was identified within the 42 kDa glycoprotein. The 13 amino acids peptide appeared to have similar biological activity as that of the full length glycoprotein (42 kDa). It is sufficient to elicit a complex defense response in parsley cells including H+/Ca2+ influxes, K+/C1- effluxes, active oxygen production, SAR gene induction, and phytoalexin compound accumulation (Nurnberger et al., "High Affinity Binding of a Fungal Oligopeptide Elicitor to Parsley Plasma Membranes Triggers Multiple Defense Response," Cell 78:449-460 (1994), which is hereby incorporated by reference).
To test if the 13 amino acid peptide derived from the 42 kDa protein also enhanced plant growth, 20 mg of the oligopeptide was synthesized from
Biosynthesis Corp. The synthesized sequence of the peptide is NH2-Val-Trp-Asn- Gln-Pro-Val-Arg-Gly-Phe-Lys-Val-Tyr-Glu-COOH (SEQ. ID. No. 39). The synthesized peptide was resuspended in 10 ml of 5 mM potassium phosphate buffer and, then, diluted to 1 and 100 ng/ml with the same buffer. About 100 tomato seeds (variety, Marglobe) were submerged in 20 ml of peptide solution overnight. The soaked seeds were planted in an 8 inch pot with artificial soil. Seeds soaked in the buffer without the peptide were used as a control. After seedlings emerged and the first two true leaves fully expanded, the height of the tomato seedlings was recorded. The peptide was not able to elicit the HR in tobacco and other tested plants. However, it had a profound effect on plant growth promotion. Table 9 shows that tomato seedlings treated with the peptide increased 12.6 % in height, indicating that the fungal peptide derived from the 42 kDa glycroprotein can promote tomato seedling growth. Extended studies showed that the peptide also had similar growth effect in other crops including tobacco. Similar growth promotion effects were achieved by plants sprayed with the peptide solution.
Table 9
Treatment Height of seedlings (cm) Average (cm) % Change
Buffer 6.0 6.0 6.0 5.5 5.5 5.55
5.5 5.5 5.0 5.0 5.5
Peptide Solution (lOOng/ml) 6.5 6.0 6.5 6.5 6.5 6.25 12.6
6.0 6.0 6.0 6.0 6.5
Although the invention has been described in detail for the purpose of illustration, it is understood that such detail is solely for that purpose, and variations can be made therein by those skilled in the art without departing from the spirit and scope of the invention which is defined by the following claims.

Claims

WHAT IS CLAIMED:
1. An isolated fragment of a hypersensitive response elicitor protein or polypeptide, wherein said fragment does not elicit a hypersensitive response but has other activity in plants.
2. An isolated fragment according to claim 1 , wherein the hypersensitive response elicitor protein or polypeptide is derived from an Erwinia Pseudomonas, Xanthomonas, or Phytophthora.
3. An isolated fragment according to claim 2, wherein the hypersensitive response elicitor protein or polypeptide is derived from Erwinia amylovora.
4. An isolated fragment according to claim 3, wherein the fragment is selected from the group consisting of a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, and an internal fragment of the amino acid sequence of SEQ. ID. No. 23.
5. An isolated fragment according to claim 4, wherein the fragment is a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23 spanning the following amino acids of SEQ. ID. No. 23: 169 and 403, 210 and 403, 267 and 403, or 343 and 403.
6. An isolated fragment according to claim 4, wherein the fragment is an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23.
7. An isolated fragment according to claim 4, wherein the fragment is an internal fragment of the amino acid sequence of SEQ. ID. No. 23 spanning the following amino acids of SEQ. ID. No. 23: 105 and 179, 137 and 166, 121 and 150, or 137 and 156.
8. An isolated fragment according to claim 2, wherein the hypersensitive response elicitor is derived from Pseudomonas syringae.
9. An isolated fragment according to claim 8, wherein the fragment contains amino acids 190 to 294 of SEQ. ID. No. 31.
10. An isolated DNA molecule encoding a fragment according to claim 1.
11. An isolated DNA molecule according to claim 10, wherein the hypersensitive response elicitor protein or polypeptide is derived from an Erwinia Pseudomonas, Xanthomonas, or Phythophthora.
12. An isolated DNA molecule according to claim 11, wherein the hypersensitive response elicitor protein or polypeptide is derived from Erwinia amylovora.
13. An isolated DNA molecule according to claim 12, wherein the fragment is selected from the group consisting of a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23, and an internal fragment of the amino acid sequence of SEQ. ID. No. 23.
14. An isolated DNA molecule according to claim 12, wherein the fragment is a C-terminal fragment of the amino acid sequence of SEQ. ID. No. 23 spanning the following amino acids of SEQ. ID. No. 23: 169 and 403, 210 and 403, 267 and 403, or 343 and 403.
15. An isolated DNA molecule according to claim 12, wherein the fragment is an N-terminal fragment of the amino acid sequence of SEQ. ID. No. 23.
16. An isolated DNA molecule according to claim 12, wherein the fragment is an internal fragment of the amino acid sequence of SEQ. ID. No. 23 spanning the following amino acids of SEQ. ID. No. 23: 105 and 179, 137 and 166, 121 and 150, or 137 and 156.
17. An isolated DNA molecule according to claim 11, wherein the hypersensitive response elicitor is derived from Pseudomonas syringae.
18. An isolated DNA molecule according to claim 18, wherein the fragment contains amino acids 190 to 294 of SEQ. ID. No. 31.
19. An expression system transformed with a DNA molecule according to claim 10.
20. An expression system according to claim 19, wherein said
DNA molecule is in proper sense orientation and correct reading frame.
21. A host cell transformed with a DNA molecule according to claim 10.
22. A host cell according to claim 21 , wherein the host cell is selected from the group consisting of a plant cell and a bacterial cell.
23. A host cell according to claim 21 , wherein the DNA molecule is transformed with an expression system.
24. A transgenic plant transformed with the DNA molecule of claim 10.
25. A transgenic plant according to claim 24, wherein the plant is selected from the group consisting of alfalfa, rice, wheat, barley, rye, cotton, sunflower, peanut, com, potato, sweet potato, bean, pea, chicory, lettuce, endive, cabbage, brussel sprout, beet, parsnip, turnip, cauliflower, broccoli, radish, spinach, onion, garlic, eggplant, pepper, celery, carrot, squash, pumpkin, zucchini, cucumber, apple, pear, melon, citrus, strawberry, grape, raspberry, pineapple, soybean, tobacco, tomato, sorghum, and sugarcane.
26. A transgenic plant according to claim 24, wherein the plant is selected from the group consisting of Arabidopsis thaliana, Saintpaulia, petunia, pelargonium, poinsettia, chrysanthemum, carnation, and zinnia.
27. A transgenic plant seed transformed with the DNA molecule of claim 10.
28. A transgenic plant seed according to claim 27, wherein the plant seed is selected from the group consisting of alfalfa, rice, wheat, barley, rye, cotton, sunflower, peanut, com, potato, sweet potato, bean, pea, chicory, lettuce, endive, cabbage, brussel sprout, beet, parsnip, turnip, cauliflower, broccoli, radish, spinach, onion, garlic, eggplant, pepper, celery, carrot, squash, pumpkin, zucchini, cucumber, apple, pear, melon, citrus, strawberry, grape, raspberry, pineapple, soybean, tobacco, tomato, sorghum, and sugarcane.
29. A transgenic plant seed according to claim 27, wherein the plant seed is selected from the group consisting of Arabidopsis thaliana, Saintpaulia, petunia, pelargonium, poinsettia, chrysanthemum, carnation, and zinnia.
30. A method of imparting disease resistance to plants comprising: applying a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, in a non-infectious form to a plant or plant seed under conditions effective to impart disease resistance.
31. A method according to claim 30, wherein plants are treated during said applying.
32. A method according to claim 30 wherein plant seeds are treated during said applying, said method further comprising: planting the seeds treated with the fragment of the hypersensitive response elicitor in natural or artificial soil and propagating plants from the seeds planted in the soil.
33. A method of enhancing plant growth comprising: applying a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, in a non-infectious form to a plant or plant seed under conditions effective to enhance plant growth.
34. A method according to claim 33, wherein plants are treated during said applying.
35. A method according to claim 33, wherein plant seeds are treated during said applying, said method further comprising: planting the seeds treated with the fragment of the hypersensitive response elicitor in natural or artificial soil and propagating plants from the seeds planted in the soil.
36. A method of insect control for plants comprising: applying a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, in a non- infectious form to a plant or plant seed under conditions effective to control insects.
37. A method according to claim 36, wherein plants are treated during said applying.
38. A method according to claim 36, wherein plant seeds are treated during said applying, said method further comprising: planting the seeds treated with the fragment of the hypersensitive response elicitor in natural or artificial soil and propagating plants from the seeds planted in the soil.
39. A method of imparting disease resistance to plants comprising: providing a transgenic plant or plant seed transformed with a DNA molecule which encodes a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, and growing the transgenic plant or transgenic plants produced from the transgenic plant seeds under conditions effective to impart disease resistance.
40. A method according to claim 39, wherein a transgenic plant is provided.
41. A method according to claim 39, wherein a transgenic plant seed is provided.
42. A method of enhancing plant growth comprising: providing a transgenic plant or a plant seed transformed with a DNA molecule which encodes a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, and growing the transgenic plant or transgenic plants produced from the transgenic plant seeds under conditions effective to enhance plant growth.
43. A method according to claim 42, wherein a transgenic plant is provided.
44. A method according to claim 42, wherein a transgenic plant seed is provided.
45. A method of insect control for plants comprising: providing a transgenic plant or plant seed transformed with a DNA molecule which encodes a fragment of a hypersensitive response elicitor protein or polypeptide, which fragment does not elicit a hypersensitive response, and growing the transgenic plant or transgenic plants produced from the transgenic plant seeds under conditions effective to control insects.
46. A method according to claim 45, wherein a transgenic plant is provided.
47. A method according to claim 45, wherein a transgenic plant seed is provided.
PCT/US1999/023181 1998-10-05 1999-10-05 Hypersensitive response elicitor fragments which are active but do not elicit a hypersensitive response WO2000020452A2 (en)

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KR1020017004332A KR20010080011A (en) 1998-10-05 1999-10-05 Hypersensitive response elicitor fragments which are active but do not elicit a hypersensitive response
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