WO1997046077A1 - Seed plants exhibiting early reproductive development and methods of making same - Google Patents

Seed plants exhibiting early reproductive development and methods of making same Download PDF

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Publication number
WO1997046077A1
WO1997046077A1 PCT/US1996/009429 US9609429W WO9746077A1 WO 1997046077 A1 WO1997046077 A1 WO 1997046077A1 US 9609429 W US9609429 W US 9609429W WO 9746077 A1 WO9746077 A1 WO 9746077A1
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leu
gene product
floral meristem
nucleic acid
glu
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PCT/US1996/009429
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French (fr)
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Martin F. Yanofsky
Detlef Weigel
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The Regents Of The University Of California
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Publication of WO1997046077A1 publication Critical patent/WO1997046077A1/en

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8262Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield involving plant development
    • C12N15/827Flower development or morphology, e.g. flowering promoting factor [FPF]
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/415Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A40/00Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
    • Y02A40/10Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
    • Y02A40/146Genetically Modified [GMO] plants, e.g. transgenic plants

Definitions

  • This invention relates generally to the field of plant genetic engineering and more specifically to genes involved in the regulation of plant reproductive development .
  • a flower is the reproductive structure of a flowering plant. Following fertilization, the ovary of the flower becomes a fruit and bears seeds. As a practical consequence, production of fruit and seed-derived crops such as grapes, beans, corn, wheat, rice and hops is dependent upon flowering.
  • a variety of external signals affect the time of flowering.
  • the time of flowering also is subject to genetic controls that prevent young plants from flowering prematurely.
  • the pattern of genes expressed in a plant is an important determinant of the time of flowering.
  • plant breeding involves generating hybrids of existing plants, which are examined for improved yield or quality.
  • the improvement of existing plant crops through plant breeding is central to increasing the amount of food grown in the world since the amount of land suitable for agriculture is limited.
  • the development of new strains of wheat, corn and rice through plant breeding has increased the yield of these crops grown in underdeveloped countries such as Mexico, India and Pakistan.
  • plant breeding is inherently a slow process since plants must be reproductively mature before selective breeding can proceed.
  • Methods of promoting early reproductive development can make breeding of long generation seed plants such as trees practical for the first time. Methods of promoting early reproductive development also would be useful for shortening growth periods, thereby broadening the geographic range in which a crop such as rice, corn or coffee can be grown. Unfortunately, methods for promoting early reproductive development in a seed plant have not yet been described. Thus, there is a need for methods that promote early reproductive development. The present invention satisfies this need and provides related advantages as well.
  • the present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
  • the invention provides a transgenic seed plant containing a first ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product such as APETALAl (API) , CAULIFLOWER (CAL) or LEAFY (LFY) .
  • a transgenic seed plant of the invention can be, for example, an angiosperm such as a cereal plant, leguminous plant, oilseed plant, hardwood tree, fruit-bearing plant or ornamental flower or a gymnosperm such as a coniferous tree.
  • angiosperm such as a cereal plant, leguminous plant, oilseed plant, hardwood tree, fruit-bearing plant or ornamental flower or a gymnosperm such as a coniferous tree.
  • the invention further provides a method of converting shoot meristem to floral meristem in an angiosperm by ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product.
  • the invention provides a method of converting shoot meristem to floral meristem by introducing a first nucleic acid molecule encoding a first floral meristem identity gene product into an angiosperm such that the floral meristem identity gene product is ectopically expressed in the angiosperm.
  • nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY can be introduced into an angiosperm, such that expression of the nucleic acid molecule in shoot meristem results in conversion of shoot meristem to floral meristem.
  • the invention further provides a method of promoting early reproductive development in a seed plant by ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product in the plant.
  • the invention provides a method of promoting early reproductive development in a seed plant by introducing a first nucleic acid molecule encoding a first floral meristem identity gene product into the seed plant such that the floral meristem identity gene product is ectopically expressed in the seed plant .
  • a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY, for example, can be ectopically expressed in a seed plant prior to the time an endogenous floral meristem identity gene product is expressed to promote early reproductive development in the seed plant .
  • Figure 1 illustrates a western-blot analysis of tissues from wild type and mutant Arabidopsi ⁇ plants with anti-API antisera.
  • the present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
  • the invention provides a transgenic seed plant containing a first ectopically expressible floral meristem identity gene product such as APETALAl (API) , CAULIFLOWER (CAL) or LEAFY (LFY) .
  • a transgenic seed plant can be, for example, an angiosperm such as a cereal plant, leguminous plant, oilseed plant, hardwood tree, fruit-bearing plant or ornamental flower or a gymnosperm such as a coniferous tree.
  • a flower like a leaf or shoot, is derived from the shoot apical meristem, which is a collection of undifferentiated cells set aside during embryogenesis.
  • the production of vegetative structures, such as leaves or shoots, and of reproductive structures, such as flowers, is temporally segregated, such that a leaf or shoot arises early in a plant life cycle, while a flower develops later.
  • the transition from vegetative to reproductive development is the consequence of a process termed floral induction (Yanofsky, Ann. Rev. Plant
  • Floral meristem differentiates into a single flower having a fixed number of floral organs in a whorled arrangement. Dicots, for example, contain four whorls (concentric rings), in which sepals (first whorl) and petals (second whorl) surround stamens (third whorl) and carpels (fourth whorl) .
  • shoot meristem and floral meristem both consist of meristemic tissue, shoot meristem is distinguishable from the more specialized floral meristem.
  • Shoot meristem generally is indeterminate and gives rise to an unspecified number of floral and lateral meristems.
  • floral meristem is determinate and gives rise to the fixed number of floral organs that comprise a flower.
  • a wild-type gene sequence is represented in upper case italic letters (for example, APETALAl)
  • a wild-type gene product is represented in upper case non-italic letters (APETALAl)
  • APETALAl upper case non-italic letters
  • a mutant gene allele is represented in lower case italic letters (api)
  • a mutant gene product is represented in lower case non-italic letters (api) .
  • floral meristem identity genes which are the subject matter of the present invention as disclosed herein, encode proteins that promote the conversion of shoot meristem to floral meristem in an angiosperm.
  • floral organ identity genes encode proteins that determine whether sepals, petals, stamens or carpels are formed during floral development (Yanofsky, supra , 1995; Weigel, Ann. Rev. Genetics 29:19-39 (1995) , which is incorporated herein by reference) .
  • Some of the floral meristem identity gene products also have a role in specifying floral organ identity.
  • Floral meristem identity genes have been identified by characterizing genetic mutations that prevent or alter floral meristem formation.
  • floral meristem identity gene mutations in Arabidopsis thaliana those in the gene LEAFY (LFY) generally have the strongest effect on floral meristem identity. Mutations in LFY completely transform the basal-most flowers into secondary shoots and have variable effects on later-arising (apical) flowers.
  • mutations in the floral meristem identity gene APETALAl (API ) result in replacement of a few basal flowers by inflorescence shoots that are not subtended by leaves .
  • An apical flower produced in an api mutant has an indeterminate structure, in which a flower arises within a flower.
  • CAULIFLOWER CAL
  • CAL CAULIFLOWER
  • floral meristem behaves as shoot meristem in that there is a massive proliferation of meristems in the position that normally would be occupied by a single flower.
  • an Arabidopsis mutant lacking only CAL such as cal -1 , has a normal phenotype, indicating that API can substitute for the loss of CAL in these plants.
  • CAL can largely substitute for API in specifying floral meristem.
  • TFL TERMINAL FLOWER
  • TFL also acts directly or indirectly to negatively regulate API and LFY expression in shoot meristem since these API and LFY are ectopically expressed in the shoot meristem of tfl mutants (Gustafson-Brown et al . , £e_l 76:131-143 (1994) ; Weigel et al . , Cell 69:843-859 (1992)) .
  • tfl mutants can have a phenotype similar to a non-naturally occurring seed plant of the invention.
  • Such tfl mutants which have a mutation in an endogenous TERMINAL FLOWER gene, are explicitly excluded from the scope of the present invention.
  • the present invention provides a non-naturally occurring seed plant such as an angiosperm or gymnosperm that contains a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that such ectopic expression is not due to a mutation in an endogenous TERMINAL FLOWER gene.
  • an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be, for example, a transgene encoding a floral meristem identity gene product under control of a heterologous gene regulatory element.
  • an ectopically expressible nucleic acid molecule can be an endogenous floral meristem identity gene coding sequence that is placed under control of a heterologous gene regulatory element.
  • the ectopically expressible nucleic acid molecule also can be, for example, an endogenous floral meristem identity gene having a modified gene regulatory element such that the endogenous floral meristem identity gene is no longer subject to negative regulation by TFL.
  • ectopically expressible is used herein to refer to a nucleic acid molecule encoding a floral meristem identity gene product that can be expressed in a tissue other than a tissue in which it normally is expressed or at a time other than the time at which it normally is expressed, provided that the floral meristem identity gene product is not expressed from its native, naturally occurring promoter.
  • Ectopic expression of a floral meristem identity gene product is a result of the expression of the gene coding region from a heterologous promoter or from a modified variant of its own promoter, such that expression of the floral meristem identity gene product is no longer in the tissue in which it normally is expressed or at the time at which it normally is expressed.
  • nucleic acid molecule encoding an API gene product under control of its native, wild type promoter does not constitute an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product.
  • a nucleic acid molecule encoding an API gene product under control of a constitutive promoter which results in expression of API in a tissue such as shoot meristem where it is not normally expressed, is an ectopically expressible nucleic acid molecule as defined herein.
  • Actual ectopic expression of a floral meristem identity gene is dependent on various factors and can be constitutive or inducible expression.
  • API which normally is expressed in floral meristem
  • angiosperm is ectopically expressible in the shoot meristem of an angiosperm.
  • a floral meristem identity gene product such as API, CAL or LFY
  • the shoot meristem is converted to floral meristem and early reproductive development can occur (see Examples I, III and IV) .
  • An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be expressed prior to the time in development at which the corresponding endogenous gene normally is expressed.
  • an Arabidopsis plant grown under continuous light conditions expresses API just prior to day 18, when normal reproductive development (flowering) begins.
  • API can be ectopically expressed in shoot meristem prior to day 18, resulting in early conversion of shoot meristem to floral meristem and early reproductive development.
  • a transgenic Arabidopsis plant that ectopically expresses API in shoot meristem under control of a constitutive promoter can flower at day 10, which is earlier than the time of reproductive development for a non-transgenic plant grown under the same conditions (day 18) . It is recognized that in some transgenic seed plants containing, for example, an exogenous nucleic acid molecule encoding API under control of a constitutive promoter, neither the exogenous nor endogenous API will be expressed. Such transgenic plants in which API gene expression is cosuppressed, although not characterized by early reproductive development, also can be valuable as disclosed below.
  • floral meristem identity gene product means a gene product that promotes conversion of shoot meristem to floral meristem in an angiosperm.
  • expression of a floral meristem identity gene product such as API, CAL or LFY in shoot meristem can convert shoot meristem to floral meristem in an angiosperm.
  • ectopic expression of a floral meristem identity gene product also can promote early reproductive development (see Example ID) .
  • a floral meristem identity gene product is distinguishable from a late flowering gene product or an early flowering gene product.
  • the use of a late flowering gene product or an early flowering gene product is not encompassed within the scope of the present invention.
  • an "inactive" floral meristem identity gene product as exemplified by the product of the Brassica oleracea var. Jbotrytis CAL gene (BobCAL) (see below) .
  • BobCAL Jbotrytis CAL gene
  • Expression of an inactive floral meristem identity gene product in an angiosperm does not result in the conversion of shoot meristem to floral meristem in the angiosperm.
  • An inactive floral meristem identity gene product such as BobCAL is excluded from the meaning of the term "floral meristem identity gene product" as defined herein.
  • a floral meristem identity gene product can be, for example, an API gene product having the amino acid sequence of SEQ ID NO: 2, which is a 256 amino acid gene product encoded by the Arabidopsis thaliana API cDNA.
  • the Arabidopsis API cDNA encodes a highly conserved MADS domain, which can function as a DNA-binding domain, and a K domain, which has structural similarity to the coiled-coil domain of keratins and can be involved in protein-protein interactions.
  • API floral meristem identity gene product
  • An API gene product useful in the invention can be, for example, Arabidopsis API having the amino acid sequence of SEQ ID NO: 2; Brassica oleracea API having the amino acid sequence of SEQ ID NO: 4;
  • API RNA is expressed in flowers but is not detectable in roots, stems or leaves (Mandel et al . , Nature 360:273-277 (1992) , which is incorporated herein by reference) .
  • the earliest detectable expression of API RNA is in young floral meristem at the time it initially forms on the flanks of shoot meristem. Expression of API increases as the floral meristem increases in size; no API expression is detectable in shoot meristem.
  • API expression ceases in cells that will give rise to reproductive organs of a flower (stamens and carpels) , but is maintained in cells that will give rise to non-reproductive organs (sepals and petals; Mandel, supra, 1992) .
  • API expression is restricted to floral meristem and to certain regions of the flowers that develop from this meristemic tissue.
  • CAULIFLOWER is another example of a floral meristem identity gene product.
  • CAULIFLOWER means a floral meristem identity gene product that is characterized, in part, by having an amino acid sequence that has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 10 in the region from amino acid 1 to amino acid 160 or with the amino acid sequence of SEQ ID NO: 12 in the region from amino acid 1 to amino acid 160.
  • a CAL gene product is exemplified by the Arabidopsis CAL gene product, which has the amino acid sequence of SEQ ID NO: 10, or the Brassi ca oleracea CAL gene product, which has the amino acid sequence of SEQ ID NO: 12.
  • CAL like API, contains a MADS domain and a K domain.
  • the MADS domains of CAL and API differ in only five of 56 amino acid residues, where four of the five differences represent conservative amino acid replacements.
  • the Arabidopsis CAL and Arabidopsis API sequences (SEQ ID NOS: 10 and 2) are 76% identical and are 88% similar if conservative amino acid substitutions are allowed.
  • RNA is expressed in young floral meristem in Arabidopsis .
  • API expression which is high throughout sepal and petal development
  • CAL expression is low in these organs.
  • CAL is expressed in floral meristem and, to a lesser extent, in the organs of developed flowers.
  • API ortholog can be categorized as both a CAL and an API, as defined herein.
  • an API ortholog can be distinguished from a CAL ortholog by demonstrating a greater similarity to Arabidopsis API than to any other MADS box gene, such as CAL, as set forth in Purugganan et al . (Genetics 140:345-356 (1995) , which is incorporated herein by reference) .
  • API can be distinguished from CAL by its ability to complement, or restore a wild-type phenotype, when introduced into a strong apl mutant.
  • API can be distinguished from CAL, if desired, by the ability of a nucleic acid molecule encoding API to complement a strong apl mutant such as apl -1 or apl -15.
  • LEAFY is yet another example of a floral meristem identity gene product.
  • the term "LEAFY” or “LFY” or “LFY gene product” means a floral meristem identity gene product that is characterized, in part, by having an amino acid sequence that has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 16.
  • LFY is expressed in floral meristem as well as during vegetative development.
  • ectopic expression in shoot meristem of a floral meristem identity gene product which normally is expressed in floral meristem, can convert shoot meristem to floral meristem in an angiosperm. Under appropriate conditions, ectopic expression in shoot meristem of a floral meristem identity gene product such as API, CAL, LFY, or a combination thereof, can promote early reproductive development.
  • orthologs of the Arabidopsis floral meristem identity genes API and LFY and the Arabidopsis organ identity genes AGAMOUS, APETALA3 and PISTILLATA have been isolated from monocots such as maize and, where characterized, reveal the anticipated RNA expression patterns and related mutant phenotypes (Schmidt et al . , Plant Cell 5:729-737 (1993) ; and Veit et al . , Plant Cell 5:1205-1215 (1993) , each of which is incorporated herein by reference) .
  • a gene ortholog can be functionally interchangeable in that it can function across distantly related species boundaries (Mandel et al . , Cell 71:133-143 (1992) , which is incorporated herein by reference) .
  • Floral meristem identity genes in particular are conserved among distantly related angiosperm and gymnosperm species.
  • a gene ortholog of Arabidopsis API has been isolated from Antirrhinum ma jus (snapdragon; Huijser et al . , EMBO J. 11:1239-1249 (1992) , which is incorporated herein by reference) .
  • an ortholog of Arabidopsis API also has been isolated from Brassica oleracea var. jbotrytis (cauliflower) and Zea Mays (maize; see Example VA) .
  • API orthlogs also can be isolated from gymnosperms.
  • gene orthologs of Arabidopsis LFY have been isolated from angiosperms such as
  • Antirrhinum majus, tobacco and poplar tree and from gymnosperms such as Douglas fir (Coen et al . , Cell . 63:1311-1322 (1990) ; Kelly et al . , Plant Cell 7:225-234 (1995) ; and Rottmann et al. , Cell Biochem. Suppl . 17B: 23 (1993) ; Strauss et al . , Molec. Breed 1:5-26 (1995) , each of which is incorporated herein by reference) .
  • the conservation of floral meristem identity gene products in non-flowering plants such as coniferous trees indicates that floral meristem identity genes can promote the reproductive development of gymnosperms as well as angiosperms .
  • apl and lfy mutants also indicates that floral meristem identity gene products such as API and LFY function similarly in distantly related plant species.
  • floral meristem identity gene products such as API and LFY function similarly in distantly related plant species.
  • a mutation in the Antirrhinum API ortholog results in a phenotype similar to the Arabidopsis apl indeterminate flower within a flower phenotype (Huijser et al . , supra , 1992) .
  • a mutation in the Antirrhinum LFY ortholog results in a phenotype similar to the Arabidopsis lfy mutant phenotype (Coen et al . , supra , 1995)
  • a floral meristem identity gene product also can function across species boundaries.
  • introduction of a nucleic acid molecule encoding Arabidopsis LFY into a heterologous seed plant such as tobacco or aspen results in early reproductive development (Weigel and Nilsson, Nature 377:495-500 (1995) , which is incorporated herein by reference) .
  • a nucleic acid molecule encoding an Arabidopsis API gene product (SEQ ID NO: 1) or an Arabidopsis CAL gene product (SEQ ID NO: 9) can be introduced into a heterologous seed plant such as corn, wheat, rice or pine and, upon ectopic expression, can promote early reproductive development in the transgenic seed plant.
  • the conserved nature of the API , CAL and LFY coding sequences among diverse seed plant species allows a nucleic acid molecule encoding a floral meristem identity gene product isolated from essentially any seed plant to be introduced into essentially any other seed plant, wherein, upon appropriate expression of the introduced nucleic acid molecule in the seed plant, the floral meristem identity gene product promotes early reproductive development in the seed plant.
  • a novel API , CAL or LFY coding sequence can be isolated from a seed plant using a nucleotide sequence as a probe and methods well known in the art of molecular biology (Sambrook et al . (eds.) , Molecular Cloning: A Laboratory Manual (Second Edition) ,
  • the invention provides a non-naturally occurring seed plant that contains a first ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene, and that is characterized by early reproductive development.
  • the term "characterized by early reproductive development,” when used in reference to a non-naturally occurring seed plant of the invention means a non-naturally occurring seed plant that forms reproductive structures earlier than the time when reproductive structures form on a corresponding naturally occurring seed plant that is grown under the same conditions and that does not ectopically express a floral meristem identity gene product.
  • the reproductive structure of an angiosperm is a flower
  • the reproductive structure of a coniferous plant is a cone.
  • reproductive development occurs at a well-defined time that depends, in part, on genetic factors as well as on environmental conditions, such as day length and temperature.
  • environmental conditions such as day length and temperature.
  • a naturally occurring seed plant will undergo reproductive development at a relatively fixed time.
  • transgenic plants that are characterized by early reproductive development have been described previously. Such transgenic plants, as discussed herein, are distinguishable from a non-naturally occurring seed plant of the invention or are explicitly excluded from the present invention.
  • a transgenic plant expressing a late-flowering gene product is distinguishable from a non-naturally occurring seed plant of the invention.
  • a transgenic plant expressing the late-flowering gene, CONSTANS (CO) flowers earlier than the corresponding wild type plant, but does not contain an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product (Putterill et al . , Cell 80:847-857 (1995)) .
  • CONSTANS CO
  • the early-flowering transgenic plant described by Putterill et al . is not a non-naturally occurring seed plant as defined herein.
  • early-flowering genes also produce plants characterized by early reproductive development.
  • early-flowering genes include, for example, EARLY FLOWERING 1 -3 (ELF1 , ELF2 , ELF3 ) ; EMBRYONIC FLOWER 1 , 2 (EMFl , EMF2) ; LONG
  • HYPOCOTYL 1 , 2 (HY1 , HY2 ) ; PHYTOCHROME B (PHYB) , SPINDLY (SPY) and TERMINAL FLOWER (TFL) (Weigel, supra , 1995) .
  • the wild type product of an early-flowering gene retards reproductive development and is distinguishable from a floral meristem identity gene product in that an early-flowering gene product does not promote conversion of shoot meristem to floral meristem in an angiosperm.
  • a plant that flowers early due to the loss of an early-flowering gene product function is distinct from a non-naturally occurring seed plant of the invention characterized by early reproductive development since such a plant does not contain an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product.
  • TFL TERMINAL FLOWER gene
  • TFL is not a floral meristem identity gene product, as defined herein. Specifically, it is the loss of TFL that promotes conversion of shoot meristem to floral meristem. Since the function of TFL is to antagonize formation of floral meristem, a tfl mutant, which lacks functional TFL, converts shoot meristem to floral meristem prematurely.
  • TFL is not a floral meristem identity gene product and does not itself convert shoot meristem to floral meristem, the loss of TFL can result in a plant with an ectopically expressed floral meristem identity gene product.
  • a tfl mutant in which a mutation in an endogenous TERMINAL FLOWER gene results in conversion of shoot meristem to floral meristem, is excluded explicitly from the present invention.
  • transgenic refers to a seed plant that contains in its genome an exogenous nucleic acid molecule, which can be derived from the same or a different plant species.
  • the exogenous nucleic acid molecule can be a gene regulatory element such as a promoter, enhancer or other regulatory element or can contain a coding sequence, which can be linked to a heterologous gene regulatory element .
  • seed plant means an angiosperm or a gymnosperm.
  • angiosperm means a seed-bearing plant whose seeds are borne in a mature ovary (fruit) .
  • An angiosperm commonly is recognized as a flowering plant.
  • glycosperm means a seed-bearing plant with seeds not enclosed in an ovary.
  • Angiosperms are divided into two broad classes based on the number of cotyledons, which are seed leaves that generally store or absorb food. Thus, a monocotyledonous angiosperm is an angiosperm having a single cotyledon, and a dicotyledonous angiosperm is an angiosperm having two cotyledons.
  • Angiosperms are well known and produce a variety of useful products including materials such as lumber, rubber, and paper; fibers such as cotton and linen; herbs and medicines such as quinine and vinblastine; ornamental flowers such as roses and orchids; and foodstuffs such as grains, oils, fruits and vegetables.
  • Angiosperms encompass a variety of flowering plants, including, for example, cereal plants, leguminous plants, oilseed plants, hardwood trees, fruit-bearing plants and ornamental flowers, which general classes are not necessarily exclusive.
  • Such angiosperms include for example, a cereal plant, which produces an edible grain cereal.
  • Such cereal plants include, for example, corn, rice, wheat, barley, oat, rye, orchardgrass, guinea grass, sorghum and turfgrass.
  • a leguminous plant is an angiosperm that is a member of the pea family ( Fabaceae) and produces a characteristic fruit known as a legume.
  • leguminous plants include, for example, soybean, pea, chickpea, moth bean, broad bean, kidney bean, lima bean, lentil, cowpea, dry bean, and peanut.
  • legumes also include alfalfa, birdsfoot trefoil, clover and sainfoin.
  • An oilseed plant also is an angiosperm with seeds that are useful as a source of oil. Examples of oilseed plants include soybean, sunflower, rapeseed and cottonseed.
  • An angiosperm also can be a hardwood tree, which is a perennial woody plant that generally has a single stem (trunk) .
  • Examples of such trees include alder, ash, aspen, basswood (linden) , beech, birch, cherry, cottonwood, elm, eucalyptus, hickory, locust, maple, oak, persimmon, poplar, sycamore, walnut and willow. Trees are useful, for example, as a source of pulp, paper, structural material and fuel.
  • An angiosperm also can be a ruit-bearing plant, which produces a mature, ripened ovary (usually containing seeds) that is suitable for human or animal consumption.
  • hops are a member of the mulberry family prized for their flavoring in malt liquor.
  • Fruit-bearing angiosperms also include grape, orange, lemon, grapefruit, avocado, date, peach, cherry, olive, plum, coconut, apple and pear trees and blackberry, blueberry, raspberry, strawberry, pineapple, tomato, cucumber and eggplant plants.
  • An ornamental flower is an angiosperm cultivated for its decorative flower.
  • Gymnosperms encompass four divisions? cycads, ginkgo, conifers and gnetophytes. The conifers are the most widespread of living gymnosperms and frequently are cultivated for structural wood or for pulp or paper. Conifers include redwood trees, pines, firs, spruces, hemlocks, Douglas firs, cypresses, junipers and yews. The skilled artisan will recognize that the methods of the invention can be practiced with these and other gymnosperms .
  • non-naturally occurring seed plant means a seed plant containing a genome that has been modified by man.
  • a transgenic seed plant for example, is a non-naturally occurring seed plant that contains an exogenous nucleic acid molecule and, therefore, has a genome that has been modified by man.
  • a seed plant that contains, for example, a mutation in an endogenous floral meristem identity gene regulatory element as a result of calculated exposure to a mutagenic agent also contains a genome that has been modified by man.
  • a seed plant containing a spontaneous or naturally occurring mutation is not a "non-naturally occurring seed plant" and, therefore, is not encompassed within the invention.
  • the present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
  • a non-naturally occurring seed plant of the invention can contain a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product that is different from the first floral meristem identity gene product, provided that the first or second nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
  • An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be expressed, as desired, either constitutively or inducibly.
  • Such an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be an endogenous floral meristem identity gene that has, for example, a mutation in a gene regulatory element .
  • An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product also can be an endogenous nucleic acid molecule encoding a floral meristem identity gene product that is linked to an exogenous, heterologous gene regulatory element that confers ectopic expression.
  • an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be an exogenous nucleic acid molecule that encodes a floral meristem identity gene product under control of a heterologous gene regulatory element .
  • a non-naturally occurring seed plant of the invention can contain an endogenous floral meristem identity gene having a modified gene regulatory element.
  • modified gene regulatory element as used herein in reference to the regulatory element of a floral meristem identity gene, means a regulatory element having a mutation that results in ectopic expression of the linked endogenous floral meristem identity gene.
  • Such a gene regulatory element can be, for example, a promoter or enhancer element and can be positioned 5' or 3 ' to the coding sequence or within an intronic sequence of the floral meristem identity gene.
  • a modified gene regulatory element can have, for example, a nucleotide insertion, deletion or substitution that is produced, for example, by chemical mutagenesis using a mutagen such as ethylmethane sulfonate or by insertional mutagenesis using a transposable element.
  • a modified gene regulatory element can be a functionally inactivated binding site for TFL or a functionally inactivated binding site for a gene product regulated by TFL, such that modification of the gene regulatory element results in ectopic expression of the linked floral meristem identity gene product, for example, in the shoot meristem of an angiosperm.
  • the present invention also provides a transgenic seed plant containing a first exogenous gene promoter that regulates a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product and a second exogenous gene promoter that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product .
  • the present invention further provides a transgenic seed plant containing a first exogenous ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product and a second exogenous gene promoter that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
  • the invention provides a transgenic seed plant containing a first exogenous ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the first second nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene, and further containing a second exogenous ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, where the first floral meristem identity gene product is different from the second floral meristem identity gene product .
  • ectopic expression of two different floral meristem identity gene products can be particularly useful.
  • a transgenic Arabidopsis line constitutively expressing API under control of the cauliflower mosaic virus 35S promoter (see Example I) was crossed with a transgenic Arabidopsis line constitutively expressing LFY under control of the cauliflower mosaic virus 35S promoter (see Example III) , and the resulting progeny were analyzed.
  • a fraction of the progeny flowered were characterized by enhanced early reproductive development as compared to the early reproductive development of 35S -API transgenic lines or 35S-LFY transgenic lines.
  • a useful combination of first and second floral meristem identity gene products can be, for example, API and LFY, CAL and LFY, or API and CAL.
  • a particularly useful combination of first and second floral meristem identity gene products is the combination of API with LFY, as disclosed above, or the combination of CAL with LFY.
  • a transgenic seed plant of the invention having, for example, API as a first floral meristem identity gene product and LFY as a second floral meristem identity gene product is equivalent to a transgenic seed plant having LFY as a first floral meristem identity gene product and API as a second floral meristem identity gene product.
  • the invention also provides methods of converting shoot meristem to floral meristem in an angiosperm by ectopically expressing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product in the angiosperm.
  • the invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing an exogenous, ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product into the angiosperm, thereby producing a transgenic angiosperm.
  • a floral meristem identity gene product such as API, CAL or LFY, or a chimeric protein containing, in part, a floral meristem identity gene product, as disclosed below, is useful in converting shoot meristem to floral meristem according to the methods of the invention.
  • introducing when used in reference to a nucleic acid molecule and a seed plant such as an angiosperm or a gymnosperm, means transferring an exogenous nucleic acid molecule into the seed plant.
  • an exogenous nucleic acid molecule encoding a floral meristem identity gene product can be introduced into a seed plant by a variety of methods including A ⁇ roJbacterium-mediated transformation or direct gene transfer methods such as electroporation or microprojectile-mediated transformation.
  • Transformation methods based upon the soil bacterium Agrobacterium tumefaciens are useful for introducing a nucleic acid molecule into a broad range of angiosperms and gymnosperms.
  • the wild type form of Agrobacterium contains a Ti (tumor-inducing) plasmid that directs production of tumorigenic crown gall growth on host plants. Transfer of the tumor-inducing T-DNA region of the Ti plasmid to a plant genome requires the Ti plasmid-encoded virulence genes as well as T-DNA borders, which are a set of direct DNA repeats that delineate the region to be transferred.
  • AgrroJbacterium-based vector is a modified form of a Ti plasmid, in which the tumor inducing functions are replaced by nucleic acid sequence of interest to be introduced into the plant host .
  • AgroJbacteriu -mediated transformation employ cointegrate vectors or, preferably, binary vector systems in which the components of the Ti plasmid are divided between a helper vector, which resides permanently in the Agrobacterium host and carries the virulence genes, and a shuttle vector, which contains the gene of interest bounded by T-DNA sequences.
  • helper vector which resides permanently in the Agrobacterium host and carries the virulence genes
  • a shuttle vector which contains the gene of interest bounded by T-DNA sequences.
  • a variety of binary vectors are well known in the art and are commercially available from, for example, Clontech (Palo Alto, California) .
  • a ⁇ roJbacterium-mediated transformation has been used to produce a variety of transgenic seed plants (see, for example, Wang et al . (eds) , Transformation of Plants and Soil Microorganisms. Cambridge, UK: University Press (1995) , which is incorporated herein by reference) .
  • Agrro acterium-mediated transformation can be used to produce transgenic crudiferous plants such as Arabidopsis, mustard, rapeseed and flax; transgenic leguminous plants such as alfalfa, pea, soybean, trefoil and white clover; and transgenic solanaceous plants such as eggplant, petunia, potato, tobacco and tomato.
  • Agro acterium-mediated transformation can be used to introduce exogenous nucleic acids into apple, aspen, belladonna, black currant, carrot, celery, cotton, cucumber, grape, horseradish, lettuce, morning glory, muskmelon, neem, poplar, strawberry, sugar beet, sunflower, walnut and asparagus plants (see, for example, Glick and Thompson, supra, 1993) .
  • Microprojectile-mediated transformation also is a well known method of introducing an exogenous nucleic acid molecule into a variety of seed plant species. This method, first described by Klein et al .
  • microprojectiles such as gold or tungsten that are coated with the desired nucleic acid molecule by precipitation with calcium chloride, spermidine or PEG.
  • the microprojectile particles are accelerated at high speed into seed plant tissue using a device such as the BiolisticTM PD-1000 (Biorad, Hercules, California) .
  • Microprojectile-mediated delivery or "particle bombardment” is especially useful to transform seed plants that are difficult to transform or regenerate using other methods.
  • Microprojectile-mediated transformation has been used, for example, to generate a variety of transgenic seed plant species, including cotton, tobacco, corn, hybrid poplar and papaya (see, for example, Glick and Thompson, supra , 1993) .
  • the transformation of important cereal crops such as wheat, oat, barley, sorghum and rice also has been achieved using microprojectile-mediated delivery (Duan et al . , Nature Biotech. 14:494-498 (1996) ; Shimamoto, Curr. Opin. Biotech. 5:158-162 (1994) , each of which is incorporated herein by reference) .
  • a rapid transformation regeneration system for the production of transgenic plants, such as transgenic wheat, in two to three months also can be useful in producing a transgenic seed plant of the invention (European Patent No. EP 0 709 462 A2, Application number 95870117.9, filed 25 October 1995, which is incorporated herein by reference) .
  • a variety of methods for introducing a nucleic acid molecule into a seed plant are well known in the art.
  • Important crop species such as rice, for example, have been transformed using microprojectile delivery, Agrobacterium-mediated transformation or protoplast transformation (Hiei et al . , The Plant J. 6(2) :271-282 (1994) ; Shimamoto, Science 270:1772-1773 (1995) , each of which is incorporated herein by reference) .
  • Fertile transgenic maize has been obtained, for example, by microparticle bombardment (see Wang et al . , supra , 1995) .
  • barley, wheat, oat and other small-grain cereal crops also have been transformed, for example, using microparticle bombardment (see Wang et al . , supra, 1995) .
  • Transgenic angiosperms such as members of the genus Populus , which includes aspens and poplars, have been generated using Agrobacterium-mediated transformation, for example.
  • transgenic Populus and sweetgum which are of interest for biomass production for fuel, also have been produced.
  • Transgenic gymnosperms including conifers such as white spruce and larch, also have been obtained, for example, using microprojectile bombardment (Wang et al . , supra , 1995) .
  • Agrobacterium-mediated or microprojectile-mediated transformation as disclosed herein, or other methods known in the art can be used to introduce a nucleic acid molecule encoding a floral meristem identity gene product into a seed plant according to the methods of the invention.
  • converting shoot meristem to floral meristem means promoting the formation of flower progenitor tissue where shoot progenitor tissue otherwise would be formed in the angiosperm.
  • flowers form in an angiosperm where shoots normally would form.
  • the conversion of shoot meristem to floral meristem can be identified using well known methods, such as scanning electron microscopy, light microscopy or visual inspection (see, for example, Mandel and Yanofsky, Plant Cell 7:1763-1771 (1995) , which is incorporated herein by reference or Weigel and Nilsson, supra , 1995) .
  • first and second floral meristem identity gene products useful in converting shoot 39 meristem to floral meristem in an angiosperm can be, for example, API and LFY, CAL and LFY, or API and CAL.
  • the invention provides a method of promoting early reproductive development in a seed plant by introducing an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product into the seed plant, thus producing a transgenic seed plant.
  • a floral meristem identity gene product such as API, CAL or LFY, or a chimeric protein containing, in part, a floral meristem identity gene product, as disclosed below, is useful in methods of promoting early reproductive development .
  • promoting early reproductive development means promoting the formation of a reproductive structure earlier than the time when a reproductive structure would form on a corresponding seed plant that is grown under the same conditions and that does not ectopically express a floral meristem identity gene product.
  • the time when reproductive structures form on a particular seed plant that does not ectopically express a floral meristem identity gene product is relatively fixed and depends, in part, on genetic factors as well as environmental conditions, such as day length and temperature.
  • environmental conditions such as day length and temperature.
  • a naturally occurring angiosperm for example, will flower at a relatively fixed time.
  • a naturally occurring coniferous gymnosperm for example, will produce cones at a relatively fixed time.
  • ectopic expression of a nucleic acid molecule encoding a floral meristem identity gene product in an angiosperm converts shoot meristem to floral meristem in the angiosperm. Furthermore, ectopic expression of a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY in an angiosperm prior to the time when endogenous floral meristem identity gene products are expressed in the angiosperm can convert shoot meristem to floral meristem precociously, resulting in early reproductive development in the angiosperm, as indicated by early flowering.
  • constitutive expression of a floral meristem identity gene product results in a relatively invariant time of early reproductive development, which is the earliest time when all factors necessary for reproductive development are active.
  • day 10 is the relatively invariant time of early reproductive development for Arabidopsis transgenics that constitutively express a floral meristem identity gene product .
  • the present invention provides methods of selecting the time of early reproductive development.
  • floral meristem gene product expression or activity can be regulated in response to an inducing agent or cognate ligand, for example, such that the time of early reproductive development can be selected.
  • the time of early reproductive development need not necessarily be the relatively invariant day 10 at which early reproductive development occurs as a consequence of constitutive floral meristem identity gene product expression. If floral meristem identity gene product expression is rendered dependent upon the presence of an inducing agent, early reproductive development can be selected to occur, for example, on day 14, by contacting the seed plant with an inducing agent on or slightly before day 14.
  • the present invention provides recombinant nucleic acid molecules, transgenic seed plant containing such recombinant nucleic acid molecules and methods for selecting the time of early reproductive development. These methods allow a farmer or horticulturist, for example, to determine the time of early reproductive development.
  • the methods of the invention can be useful, for example, in allowing a grower to respond to an approaching storm or impending snap-freeze by selecting the time of early reproductive development such that the crop can be harvested before being harmed by the adverse weather conditions.
  • the methods of the invention for selecting the time of early reproductive development also can be useful to spread out the time period over which transgenic seed plants are ready to be harvested. For example, the methods of the invention can be used to increase floral meristem identity gene product expression in different crop fields at different times, resulting in a staggered time of harvest for the different fields.
  • the present invention provides a recombinant nucleic acid molecule containing an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product.
  • the floral meristem identity gene product encoded within a recombinant nucleic acid molecule of the invention can be, for example, API or CAL.
  • the floral meristem identity gene product encoded within a recombinant nucleic acid molecule of the invention can be LFY.
  • a recombinant nucleic acid molecule of the invention can contain an inducible regulatory element such as a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element.
  • an inducible regulatory element such as a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element.
  • the invention also provides a transgenic seed plant containing a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product .
  • a transgenic seed plant can be an angiosperm or gymnosperm and can contain, for example, a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding API or CAL.
  • a transgenic seed plant of the invention can contain, for example, a recombinant nucleic acid molecule comprising a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding API.
  • a transgenic seed plant of the invention can contain a recombinant nucleic acid molecule comprising a copper inducible element tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding CAL.
  • a transgenic seed plant of the invention also can contain a recombinant nucleic acid molecule comprising a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding LFY.
  • recombinant nucleic acid molecule means a non-naturally occurring nucleic acid molecule that has been manipulated in vi tro such that it is genetically distinguishable from a naturally occurring nucleic acid molecule.
  • a recombinant nucleic acid molecule of the invention comprises two nucleic acid molecules that have been manipulated in vi tro such that the two nucleic acid molecules are operably linked.
  • inducible regulatory element means a nucleic acid molecule that confers conditional expression upon an operably linked nucleic acid molecule, where expression of the operably linked nucleic acid molecule is increased in the presence of a particular inducing agent as compared to expression of the nucleic acid molecule in the absence of the inducing agent.
  • a useful inducible regulatory element has the following characteristics: confers low level expression upon an operably linked nucleic acid molecule in the absence of an inducing agent; confers high level expression upon an operably linked nucleic acid molecule in the presence of an appropriate inducing agent; and utilizes an inducing agent that does not interfere substantially with the normal physiology of a transgenic seed plant treated with the inducing agent. It is recognized, for example, that, subsequent to introduction into a seed plant, a particularly useful inducible regulatory element is one that confers an extremely low level of expression upon an operably linked nucleic acid molecule in the absence of inducing agent . Such an inducible regulatory element is considered to be tightly regulated.
  • operably linked means that the regulatory element confers regulated expression upon the operably linked nucleic acid molecule encoding the floral meristem identity gene product.
  • operably linked means that the inducible regulatory element is linked to the nucleic acid molecule encoding a floral meristem identity gene product such that the inducible regulatory element increases expression of the floral meristem identity gene product in the presence of the appropriate inducing agent.
  • two nucleic acid molecules that are operably linked contain, at a minimum, all elements essential for transcription, including, for example, a TATA box.
  • an inducible regulatory element that lacks minimal promoter elements can be combined with a nucleic acid molecule having minimal promoter elements and a nucleic acid molecule encoding a floral meristem identity gene product such that expression of the floral meristem identity gene product can be increased in the presence of the appropriate inducing agent .
  • a particularly useful inducible regulatory element can be, for example, a copper-inducible promoter (Mett et al., Proc. Natl. Acad. Sci. USA 90:4567-4571 (1993) , which is incorporated herein by reference) ; tetracycline-inducible regulatory element (Gatz et al. , Plant J. 2:397-404 (1992) ; R ⁇ der et al . , Mol. Gen. Genet. 243:32-38 (1994) , each of which is incorporated herein by reference) ; ecdysone inducible element (Christopherson et al., Proc. Natl. Acad. Sci.
  • Another useful inducible regulatory element can be a lac operon element, which is used in combination with a constitutively expressed lac repressor to confer, for example, IPTG-inducible expression, as described by Wilde et al . , (EMBO J. 11:1251-1259 (1992) , which is incorporated herein by reference) .
  • An inducible regulatory element useful in a method of the invention also can be, for example, a nitrate-inducible promoter derived from the spinach nitrite reductase gene (Back et al . , Plant Mol .
  • An inducible regulatory element useful in constructing a transgenic seed plant also can be a salicylic acid inducible element (Uknes et al . , Plant Cell 5:159-169 (1993) ; Bi et al . , Plant J.
  • a human glucocorticoid response element also is an inducible regulatory element that can confer hormone-dependent gene expression in seed plants (Schena et al., Proc. Natl. Acad. Sci. USA 88:10421 (1991) , which is incorporated herein by reference) .
  • an inducible regulatory element that is particularly useful for increasing expression of a floral meristem identity gene product in a transgenic seed plant of the invention is a copper inducible regulatory element (see, for example, Mett et al . , supra , 1993) .
  • the invention provides a recombinant nucleic acid molecule comprising a copper inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product and a transgenic seed plant containing such a recombinant nucleic acid molecule.
  • Copper which is a natural part of the nutrient environment of a seed plant, can be used to increase expression of a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a copper inducible regulatory element.
  • an ACE1 binding site in conjunction with constitutively expressed yeast ACE1 protein confers copper inducible expression upon an operably linked nucleic acid molecule.
  • the ACE1 protein, a metalloresponsive transcription factor is activated by copper or silver ions, resulting in increased expression of a nucleic acid molecule operably linked to an ACE1 element.
  • Such a copper inducible regulatory element can be an ACE1 binding site from the etallothionein gene promoter (SEQ ID NO: 21; Furst et al . , Cell 55:705-717
  • the ACE1 binding site can be combined with the 90 base-pair domain A of the cauliflower mosaic virus 35S promoter and operably linked to a nucleic acid molecule encoding API, CAL or LFY to produce a recombinant nucleic acid molecule of the invention.
  • a transgenic seed plant constitutively expressing ACE1 under control of such a modified CaMV 35S promoter for example, copper inducible expression is conferred upon an operably linked nucleic acid molecule encoding a floral meristem identity gene product .
  • nucleic acid encoding a floral meristem identity gene product operably linked to a copper inducible regulatory element such as 5 ' -AGCTTAGCGATGCGTCTTTTCCGCTGAACCGTTCCAGCAAAAAAGACTAG-3 ' (SEQ ID NO: 21)
  • a copper inducible regulatory element such as 5 ' -AGCTTAGCGATGCGTCTTTTCCGCTGAACCGTTCCAGCAAAAAAGACTAG-3 ' (SEQ ID NO: 21)
  • a single application of 0.5 ⁇ M copper sulfate can be sufficient to sustain increased floral meristem identity gene product expression over a period of several days.
  • a transgenic seed plant of the invention also can be contacted with multiple applications of an inducing agent such as copper sulfate.
  • an inducible regulatory element also can confer tetracycline-dependent floral meristem identity gene expression in a transgenic seed plant of the invention.
  • the present invention provides a recombinant nucleic acid molecule comprising a tetracycline inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product as well as a transgenic seed plant into which such a recombinant nucleic acid molecule has been introduced.
  • a tetracycline inducible regulatory element is particularly useful for conferring tightly regulated gene expression as indicated by the observation that a phenotype that results from even low amounts of a gene product expression is suppressed from such an inducible system in the absence of inducing agent (see, for example, R ⁇ der et al . , supra , 1994) .
  • a transgenic seed plant constitutively expressing TnlO-encoded Tet repressor (TetR) can be contacted with tetracycline to increase expression of a nucleic acid molecule encoding a floral meristem identity gene product operably linked to the cauliflower mosaic virus promoter containing several tet operator sequences (5 ' -ACTCTATCAGTGATAGAGT-3 ' ; SEQ ID NO: 22) positioned close to the TATA box (see, for example, Gatz, Meth. Cell Biol. 50:411-424 (1995) , which is incorporated herein by reference; Gatz et al . , supra ,
  • Such a tetracycline-inducible system can increase expression of an operably linked nucleic acid molecule as much as 200 to 500-fold in a transgenic angiosperm or gymnosperm of the invention.
  • a seed plant preferably is transformed first with a plasmid encoding the Tet repressor, and screened for high level expression.
  • plasmid pBinTet contains the Tet repressor coding region, which is expressed under control of the CaMV 35S promoter, and the neo ycin phosphotransferase gene for selection of transformants.
  • a plasmid containing a reporter gene under control of a promoter with tet operators such as pTX-Gus-int (Gatz, supra , 1995)
  • tet operators such as pTX-Gus-int (Gatz, supra , 1995)
  • GUS high ⁇ -glucouronidase
  • a particularly useful tetracycline inducible regulatory element is present in plasmid pBIN-HygTX, which has a CaMV 35S promoter, into which three tet operator sites have been inserted, and an octopine synthase polyadenylation site (Gatz, supra, 1995) .
  • pBIN-HygTX has a CaMV 35S promoter, into which three tet operator sites have been inserted, and an octopine synthase polyadenylation site (Gatz, supra, 1995) .
  • a multiple cloning site between the promoter and polyadenylation signal in pBIN-HygTX allows for convenient insertion of a nucleic acid molecule encoding the desired floral meristem identity gene product, and the hygromycin phosphotransferase gene allows for selection of transformants containing the construct.
  • Tet repressor positive cells are transformed with a plasmid such as pBIN-HygTX, into which a nucleic acid molecule encoding a floral meristem identity gene product has been inserted.
  • a plasmid such as pBIN-HygTX
  • a transgenic seed plant of the invention can be contacted with tetracycline or, preferably, with chlor-tetracycline (SIGMA) , which is a more efficient inducer than tetracycline.
  • a useful inducing agent can be a tetracycline analog that binds the Tet repressor to function as an inducer but that does not act as an antibiotic (Gatz, supra , 1995) .
  • a transgenic seed plant of the invention can be contacted, for example, by watering with about 1 mg/liter chlor-tetracycline or tetracycline.
  • a plant grown in hydroponic culture can be contacted with a solution containing about 1 mg/liter chlor-tetracycline or tetracycline (Gatz, supra, 1995) .
  • a transgenic angiosperm or gymnosperm can be contacted repeatedly with chlor-tetracycline or tetracycline every other day for about 10 days (R ⁇ der et al . , supra, 1994) .
  • Floral meristem identity gene product expression is increased efficiently at a tetracycline concentration that does not inhibit the growth of bacteria, indicating that the use of tetracycline as an inducing agent will not present environmental concerns.
  • an ecdysone inducible regulatory element also can be useful in practicing the methods of the invention.
  • an ecdysone inducible regulatory element can contain four copies of an ecdysone response element having the sequence 5 ' -GATCCGACAAGGGTTCAATGCACTTGTCA-3 ' (EcRE; SEQ ID NO: 23) as described in Christopherson et al . , supra , 1992.
  • an ecdysone inducible regulatory element can confer ecdysone-dependent expression on a nucleic acid molecule encoding a floral meristem identity gene product .
  • An appropriate inducing agent for increasing expression of a nucleic acid molecule operably linked to an ecdysone inducible regulatory element can be, for example, ⁇ -ecdysone, 20-hydroxyecdysone, polypodine B, ponasterone A, muristerone A or RH-5992, which is an ecdysone agonist that mimics 20-hydroxyecdysone (see, for example, Kreutzweiser et al . , Ecotoxicol . Environ. Safety 28:14-24 (1994) , which is incorporated herein by reference and Christopherson et al . , supra , 1992) .
  • compound RH-5992 can be a particularly useful inducing agent for increasing floral meristem gene product expression in a transgenic seed plant containing an ecdysone inducible regulatory element.
  • An inducible regulatory element also can be derived from the promoter of a heat shock gene, such as HSP81 -1 (SEQ ID NO: 24; Takahashi, supra, 1992) .
  • the invention also provides a recombinant nucleic acid molecule comprising a heat shock inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product and a transgenic seed plant containing such a recombinant nucleic acid molecule.
  • the HSP81 -1 promoter confers low level expression upon an operably linked nucleic acid molecule in parts of roots under unstressed conditions and confers high level expression in most Arabidopsis tissues following heat shock (see, for example, Yabe et al . , Plant Cell Physiol. 35:1207-1219 (1994), which is incorporated herein by reference) .
  • a single heat shock treatment at 37°C for two hours is sufficient to induce expression of a nucleic acid molecule operably linked to the HSP81 -1 gene regulatory element (see Ueda et al . , Mol. Gen. Genet. 250:533-539 (1996) , which is incorporated herein by reference) .
  • a heat shock inducible regulatory element is particularly useful for a transgenic seed plant of the invention grown in an enclosed environment such as a green house, where temperature can be readily manipulated.
  • the use of a heat shock inducible regulatory element especially is applicable to a transplantable or potted transgenic seed plant of the invention, which can be moved conveniently from an environment having a low temperature to an environment having a high temperature .
  • a transgenic angiosperm or gymnosperm of the invention containing a recombinant nucleic acid molecule comprising a HSP81 - 1 heat shock regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product also can be induced, for example, by altering the ambient temperature, watering with heated water or submersing the transgenic seed plant in a sealed plastic bag into a heated water bath (see, for example, Ueda et al . , supra , 1996) .
  • a recombinant nucleic acid molecule of the invention comprising an inducible gene regulatory element can be expressed variably in different lines of transgenic seed plants.
  • leaky expression of the introduced recombinant nucleic acid molecule can occur in the absence of the appropriate inducing agent due to phenomena such as position effects (see, for example, Ueda et al . , supra, 1996) .
  • a transgenic seed plant containing a recombinant nucleic acid molecule comprising an inducible gene regulatory element operably linked to a nucleic acid encoding a floral meristem identity gene product can be screened, if desired, to obtain a particular transgenic seed plant in which expression of the operably linked nucleic acid molecule is desirably low in the absence of the appropriate inducing agent .
  • the present invention also provides a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product to produce a transgenic angiosperm, and contacting the transgenic angiosperm with an inducing agent, thereby increasing expression of the floral meristem identity gene product and converting shoot meristem to floral meristem in the transgenic angiosperm.
  • the inducible regulatory element can be, for example, a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element, and the floral meristem identity gene product can be, for example, API, CAL or LFY.
  • the invention provides a method of promoting early reproductive development in a seed plant such as an angiosperm or gymnosperm by introducing into the seed plant a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product to produce a transgenic seed plant, and contacting the transgenic seed plant with an inducing agent, thereby increasing expression of the floral meristem identity gene product and promoting early reproductive development in the transgenic seed plant.
  • the inducible regulatory element can be, for example, a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element
  • the floral meristem identity gene product can be, for example, API, CAL or LFY.
  • inducing agent means a substance or condition that effects increased expression of a nucleic acid molecule operably linked to a particular inducible regulatory element as compared to the level of expression of the nucleic acid molecule in the absence of the inducing agent .
  • An inducing agent can be, for example, a naturally occurring or synthetic chemical or biological molecule such as a simple or complex organic molecule, a peptide, a protein or an oligonucleotide that increases expression of a nucleic acid molecule operably linked to a particular inducible regulatory element .
  • An example of such an inducing agent is a compound such as copper sulfate, tetracycline or an ecdysone.
  • An inducing agent also can be a condition such as heat of a certain temperature or light of a certain wavelength.
  • an "appropriate” inducing agent means an inducing agent that results in increased expression of a nucleic acid molecule operably linked to the particular inducible regulatory element.
  • An inducing agent of the invention can be used alone or in solution or can be used in conjunction with an acceptable carrier that can serve to stabilize the inducing agent or to promote absorption of the inducing agent by a seed plant. If desired, a transgenic seed plant of the invention can be contacted with an inducing agent in combination with an unrelated substance such as a plant nutrient, pesticide or insecticide.
  • One skilled in the art can readily determine the optimum concentration of an inducing agent needed to produce increased expression of a nucleic acid molecule operably linked to an inducible regulatory element in a transgenic seed plant of the invention. For conveniently determining the optimum concentration of inducing agent from a range of useful concentrations, one skilled in the art can operably link the particular inducible regulatory element to a nucleic acid molecule encoding a reporter gene product such as ⁇ -glucouronidase (GUS) and assay for reporter gene product activity in the presence of various concentrations of inducing agent (see, for example, Jefferson et al . , EMBO J. 6:3901-3907 (1987) , which is incorporated herein by reference) .
  • GUS ⁇ -glucouronidase
  • the term "contacting, " in reference to a transgenic seed plant of the invention, means exposing the transgenic seed plant to an inducing agent, or to a cognate ligand as disclosed below, such that the agent can induce expression of a nucleic acid molecule operably linked to the particular inducible regulatory element .
  • a transgenic seed plant such as an angiosperm or gymnosperm, which contains a recombinant nucleic acid molecule of the invention, can be contacted with an inducing agent in a variety of manners.
  • Expression of a floral meristem identity gene product can be increased conveniently, for example, by spraying a transgenic seed plant with an aqueous solution containing an appropriate inducing agent or by adding an appropriate inducing agent to the water supply of a transgenic seed plant grown using irrigation or to the water supply of a transgenic seed plant grown hydroponically.
  • a transgenic seed plant containing a recombinant nucleic acid molecule of the invention also can be contacted by spraying the seed plant with an inducing agent in aerosol form.
  • a transgenic seed plant can be contacted with an appropriate inducing agent by adding the agent to the soil or other solid nutrient media in which the seed plant is grown, whereby the inducing agent is absorbed into the seed plant.
  • contacting can be effected by altering the temperature or light to which the transgenic seed plant is exposed, or, if desired, by moving the transgenic seed plant from an environment of one temperature or light source to an environment having the appropriate inducing temperature or light source.
  • a transgenic seed plant of the invention can be contacted individually with an inducing agent.
  • a group of transgenic seed plants that, for example, are located together in a garden plot, hot house or field, can be contacted en masse with an inducing agent, such that floral meristem identity gene product expression is increased coordinately in all transgenic seed plants of the group.
  • a transgenic seed plant of the invention can be contacted with an inducing agent using one of several means.
  • a transgenic seed plant can be contacted with an inducing agent by non-automated means such as with a hand held spraying apparatus.
  • non-automated means such as with a hand held spraying apparatus.
  • Such manual means can be useful when the methods of the invention are applied to particularly delicate or valuable seed plant varieties or when it is desirable, for example, to promote early reproductive development in a particular transgenic seed plant without promoting early reproductive development in a neighboring transgenic seed plant.
  • a transgenic seed plant of the invention can be contacted with an inducing agent by mechanical means such as with a conventional yard "sprinkler" for a transgenic seed plant grown, for example, in a garden; a mechanical spraying system in a green house; traditional farm machinery for spraying field crops; or "crop dusting" for conveniently contacting an entire field of transgenic seed plants with a particulate or gaseous inducing agent.
  • mechanical means such as with a conventional yard "sprinkler” for a transgenic seed plant grown, for example, in a garden; a mechanical spraying system in a green house; traditional farm machinery for spraying field crops; or “crop dusting” for conveniently contacting an entire field of transgenic seed plants with a particulate or gaseous inducing agent.
  • a transgenic seed plant of the invention can be contacted with a single treatment of an inducing agent or, if desired, can be contacted with multiple applications of the inducing agent.
  • a transgenic seed plant of the invention is contacted once with an inducing agent to effectively increase floral meristem identity gene product expression, thereby promoting early reproductive development in the transgenic seed plant.
  • a transgenic angiosperm of the invention preferably is contacted once with an inducing agent to effectively increase floral meristem identity gene product expression and convert shoot meristem to floral meristem in the transgenic angiosperm.
  • a single application of an inducing agent is preferable when a transient increase in floral meristem identity gene product expression from a recombinant nucleic acid molecule of the invention promotes irreversible early reproductive development in a seed plant.
  • early reproductive development is irreversible.
  • Transient expression of a floral meristem identity gene product from an introduced recombinant nucleic acid molecule results in sustained ectopic expression of endogenous floral meristem identity gene products, resulting in irreversible early reproductive development.
  • ectopic expression of API in a transgenic plant induces endogenous LFY gene expression
  • ectopic expression of LFY induces endogenous API gene expression
  • CAL can act directly or indirectly to increase expression of API and LFY.
  • ectopic expression of CAL from an exogenous nucleic acid molecule can induce endogenous API and LFY expression (see Bowman et al . , supra , 1993) .
  • Enhanced expression of endogenous API, LFY or CAL following a transient increase in expression of an introduced floral meristem identity gene product induced by a single application of an inducing agent can make repeated applications of an inducing agent unnecessary.
  • angiosperms characterized by the phenomenon of floral reversion
  • repeated applications of the inducing agent can be desirable.
  • an initiated flower can revert into a shoot such that the center of the developing flower behaves as an indeterminate shoot (see, for example, Battey and Lyndon, Ann. Bot . 61:9-16 (1988) , which is incorporated by reference herein) .
  • repeated applications of an inducing agent can be useful. Repeated applications of an inducing agent, as well as single applications, are encompassed within the scope of the present invention.
  • the invention further provides a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY linked in frame to a nucleic acid molecule encoding a ligand binding domain.
  • a chimeric protein of the invention in a seed plant is useful because the ligand binding domain renders the activity of a linked gene product dependent on the presence of cognate ligand.
  • floral meristem gene product activity is increased in the presence of cognate ligand, as compared to activity in the absence of cognate ligand.
  • a nucleic acid molecule encoding a chimeric protein of the invention comprises a nucleic acid molecule encoding a floral meristem identity gene product, such as a nucleic acid molecule having the nucleic acid sequence SEQ ID NO: 1, SEQ ID NO: 9 or SEQ ID NO: 15, which encodes API, CAL or LFY, respectively, any of which is linked in frame to a nucleic acid molecule encoding a ligand binding domain.
  • the expression of such a nucleic acid molecule results in the production of a chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain.
  • the invention also provides a chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain and an antibody that specifically binds such a chimeric protein.
  • the invention further provides a transgenic seed plant, such as angiosperm or gymnosperm, that contains a nucleic acid molecule encoding a chimeric protein of the invention.
  • the invention provides, for example, a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a ligand binding domain.
  • a particularly useful transgenic seed plant contains a nucleic acid molecule encoding API linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain.
  • the invention also provides a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding CAL linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain.
  • a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding LFY linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain.
  • Any floral meristem identity gene product, as defined herein, is useful in a chimeric protein of the invention.
  • a nucleic acid molecule encoding Arabidopsis thaliana API (SEQ ID NO: 2) , Brassica oleracea API (SEQ ID NO: 4) , Brassica oleracea var. Botrytis API (SEQ ID NO: 8) or Zea mays API (SEQ ID NO: 10) , each of which have activity in converting shoot meristem to floral meristem, can be used to construct a nucleic acid molecule encoding a chimeric protein of the invention.
  • nucleic acid molecule encoding for example, Arabidopsis thaliana CAL (SEQ ID NO: 10) , Brassica oleracea CAL (SEQ ID NO: 12) , or a nucleic acid molecule encoding Arabidopsis thaliana LFY (SEQ ID NO: 16) is useful when linked in frame to a nucleic acid molecule encoding a ligand binding domain to produce a nucleic acid molecule encoding a ligand-dependent chimeric protein of the invention.
  • a ligand binding domain useful in a chimeric protein of the invention is a domain that, when fused in frame to a heterologous gene product, renders the activity of the fused gene product dependent on cognate ligand such that the activity of the fused gene product is increased in the presence of cognate ligand as compared to its activity in the absence of ligand.
  • a ligand binding domain can be a steroid binding domain such as the ligand binding domain of an ecdysone receptor, glucocorticoid receptor, estrogen receptor, progesterone receptor, androgen receptor, thyroid receptor, vitamin D receptor or retinoic acid receptor.
  • a particularly useful ligand binding domain is the ecdysone receptor ligand binding domain contained within amino acids 329 to 878 of the Drosophila ecdysone receptor (SEQ ID NO: 18) ; Koelle et al., Cell 67:59-77 (1991) ; Thummel, Cell 83:871-877 (1995) , each of which is incorporated herein by reference) or a glucocorticoid receptor ligand binding domain, encompassed, for example, within amino acids 512 to 795 of the rat glucocorticoid receptor (SEQ ID NO: 20; Miesfeld et al. , Cell 46:389-399 (1986) , which is incorporated herein by reference) .
  • a chimeric protein of the invention containing an ecdysone receptor ligand binding domain has floral meristem identity gene product activity that can be increased in the presence of ecdysone ligand.
  • a chimeric protein of the invention containing a glucocorticoid receptor ligand binding domain has floral meristem identity gene product activity that is increased in the presence of glucocorticoid ligand.
  • a nucleic acid molecule encoding a chimeric protein of the invention can be introduced into a seed plant where, under appropriate conditions, the chimeric protein is expressed.
  • floral meristem identity gene product activity can be increased by contacting the transgenic seed plant with cognate ligand.
  • a heterologous protein fused to a rat glucocorticoid receptor ligand binding domain (amino acids 512 to 795) expressed under the control of the constitutive cauliflower mosaic virus 35S promoter in Arabidopsis was low in the absence of glucocorticoid ligand; whereas, upon contacting the transformed plants with a synthetic glucocorticoid, dexamethasone, activity of the protein was increased greatly (Lloyd et al . , Science 266:436-439 (1994) , which is incorporated herein by reference) .
  • a ligand binding domain fused to a floral meristem identity gene product renders the activity of a fused floral meristem identity gene product ligand-dependent such that, upon contacting the transgenic seed plant with cognate ligand, floral meristem identity gene product activity is increased.
  • nucleic acid molecule encoding a chimeric protein of the invention are routine and well known in the art (Sambrook et al . , supra , 1989) . Methods of constructing, for example, a nucleic acid encoding an APl-glucocorticoid receptor ligand binding domain chimeric protein are described in Example IV. For example, the skilled artisan recognizes that a stop codon encoded by the nucleic acid molecule must be removed and that the two nucleic acid molecules must be linked in frame such that the reading frame of the 3 ' nucleic acid molecule coding sequence is preserved.
  • a seed plant such as an angiosperm or gymnosperm with a nucleic acid molecule
  • methods of transforming a seed plant such as an angiosperm or gymnosperm with a nucleic acid molecule are disclosed above and well known in the art (see Examples I, II and III; see, also, Mohoney et al . , U.S. patent number 5,463,174, and Barry et al . , U.S. patent number 5,463,175, each of which is incorporated herein by reference) .
  • a 5' nucleic acid molecule which encodes the amino-terminal portion of the chimeric protein, must be linked to a 3 ' nucleic acid molecule, which encodes the carboxyl-terminal portion of the chimeric protein, such that the carboxyl-terminal portion of the chimeric protein is translated in the correct reading frame.
  • nucleic acid molecule encoding a chimeric protein of the invention can comprise, for example, a 5' nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a 3 ' nucleic acid molecule encoding a ligand binding domain or can comprise a 5' nucleic acid molecule encoding a ligand binding domain linked in frame to a 3 ' nucleic acid molecule encoding a floral meristem identity gene product.
  • a nucleic acid molecule encoding a chimeric protein of the invention comprises a 5' nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a 3 ' nucleic acid molecule encoding a ligand binding domain.
  • transgenic angiosperm containing a chimeric protein of the invention conversion of shoot meristem to floral meristem can be induced by contacting the transgenic angiosperm with a cognate ligand that is absorbed by the angiosperm and binds the chimeric protein within its ligand binding domain.
  • the present invention provides a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain is expressed; and contacting the transgenic angiosperm with cognate ligand, where, upon binding of the cognate ligand to the ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm.
  • the present invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain, to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic angiosperm with ecdysone ligand, where, upon binding of the ecdysone ligand to the ecdysone receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm.
  • the invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic angiosperm with glucocorticoid ligand, where, upon binding of the glucocorticoid ligand to the glucocorticoid receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm.
  • the invention provides a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein of the invention to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain is expressed; and contacting the transgenic seed plant with cognate ligand, where, upon binding of the cognate ligand to the ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant.
  • the methods of the invention can be practiced with numerous seed plant varieties.
  • the seed plant can be, for example, an angiosperm such as a cereal plant, leguminous plant, hardwood tree or coffee plant, or can be a gymnosperm such as a pine, fir, spruce or redwood tree.
  • a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain, to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic seed plant with ecdysone ligand, where, upon binding of the ecdysone ligand to the ecdysone receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant.
  • the invention provides, for example, a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic seed plant with glucocorticoid ligand, where, upon binding of the glucocorticoid ligand to the glucocorticoid receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant .
  • ligand means a naturally occurring or synthetic chemical or biological molecule such as a simple or complex organic molecule, a peptide, a protein or an oligonucleotide that specifically binds a ligand binding domain.
  • a ligand can be used alone or in solution or can be used in conjunction with an acceptable carrier that can serve to stabilize the ligand or promote absorption of the ligand by a seed plant.
  • a transgenic seed plant of the invention can be contacted with a ligand for increasing floral meristem identity gene product activity in combination with an unrelated molecule such as a plant nutrient, pesticide or insecticide.
  • the term "cognate ligand” means a ligand that, under suitable conditions, specifically binds the particular ligand binding domain.
  • a concentration of about 1 nM to 10 ⁇ M cognate ligand is useful for increasing floral meristem identity gene product activity in a transgenic seed plant expressing a chimeric protein of the invention.
  • a concentration of about 100 nM to 1 ⁇ M cognate ligand is useful for increasing floral meristem identity gene product activity in a transgenic seed plant containing a chimeric protein of the invention (see, for example, Christopherson et al . , Proc. Natl. Acad. Sci.
  • a concentration of about 100 nM to 1 ⁇ M dexamethasone can be useful for increasing floral meristem identity gene product activity in a transgenic seed plant of the invention containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product, such as API or CAL, linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, as described in Example IV.
  • a transgenic seed plant of the invention such as a transgenic seed plant expressing a chimeric protein of the invention, can be contacted in a variety of manners.
  • a transgenic seed plant can be contacted with cognate ligand, for example, by spraying the seed plant with a gaseous ligand or with solution such as an aqueous solution containing the appropriate ligand; or by adding the cognate ligand to the water supply of a seed plant grown using irrigation or grown hydroponically; or by adding the cognate ligand to the soil or other solid nutrient medium in which a seed plant is grown, whereby the cognate ligand is absorbed into the seed plant to increase floral meristem identity gene product activity.
  • a transgenic seed plant expressing a chimeric protein of the invention also can be contacted with a cognate ligand in aerosol form.
  • a transgenic seed plant can be contacted with cognate ligand by injecting the seed plant or by immersing the seed plant in a solution containing the cognate ligand.
  • a transgenic seed plant expressing a chimeric protein of the invention can be contacted individually with cognate ligand, or a group of transgenic seed plants can be contacted en masse to increase floral meristem gene product activity synchronously in all seed plants of the group. Furthermore, a variety of means can be used to contact a transgenic seed plant of the invention with cognate ligand to increase floral meristem identity gene product activity.
  • a transgenic seed plant can be contacted with cognate ligand using, for example, a hand held spraying apparatus; conventional yard “sprinkler”; mechanical spraying system, such as an overhead spraying system in a green house; traditional farm machinery, or "crop dusting.”
  • a hand held spraying apparatus for example, a hand held spraying apparatus; conventional yard “sprinkler”; mechanical spraying system, such as an overhead spraying system in a green house; traditional farm machinery, or "crop dusting.”
  • the methods of the invention can be practiced using these and other manual or mechanical means to contact a transgenic seed plant with single or multiple applications of cognate ligand.
  • the nucleic acid molecules encoding floral meristem identity gene products provided herein also can be useful in generating sterile transgenic seed plants and in methods of producing reproductive sterility in seed plants.
  • the methods of the invention involve cosuppression metholodology, where a nucleic acid molecule in the sense orientation is introduced into a seed plant to suppress expression of a homologous endogenous gene, or involve antisense metholodology.
  • the present invention provides cosuppression and antisense methods of producing reproductively sterile transgenic seed plants as well as the two types of sterile transgenic seed plants produced by these methods .
  • a method of the invention for producing a reproductively sterile transgenic seed plant has a variety of uses including safely growing transgenic trees in close contact with interfertile wild trees, increasing wood production and reducing allergenic pollen production.
  • a method for producing reproductive sterility in seed plants which is useful for transgene containment, can allow, for example, the introduction of transgenic trees into the environment. Of particular concern to the introduction of transgenic trees into the environment is the possibility of enhanced "weediness" or the movement of transgenes by cross-fertilization into gene pools of wild relatives.
  • Most commercially grown forest trees, for example are grown in close proximity to interfertile wild populations, and gene flow within and among tree populations usually is extensive, making the probability of transgene escape from plantations of fertile transgenic trees high.
  • transgenic tree planting on sexual isolation of the transgenic species; for example, approval of two field tests for transgenic poplars by the Animal and Plant Health Inspection Service (APHIS) was contingent on the trees not being allowed to flower (see, for example, Strauss et al . , Molec. Breed 1:5-26 (1995) , which is incorporated herein by reference) .
  • APIS Animal and Plant Health Inspection Service
  • Methods of producing reproductively sterile seed plants also can be useful for increasing wood production, since substantial energy and nutrients are committed to reproductive development in trees. For example, in trees such as radiata pine, white spruce, balsam fir and Douglas fir, reduced growth, as measured by height or stem volume, is correlated with the early production of cones (Strauss et al . , supra, 1995) .
  • the methods of the invention which prevent flowering or cone development, for example, by producing reproductive sterility, are useful for growing substantially larger trees, thus increasing wood production.
  • a method for producing reproductively sterile seed plants also can be useful for alleviating allergies caused by tree pollen.
  • many people suffer from allergies caused by the most commonly planted forest tree, the conifer sugi (Strauss et al . , supra, 1995) .
  • the methods of the invention therefore, can be advantageous for preventing pollen formation in seed plants such as the conifer sugi.
  • Cosuppression which relies on expression of a nucleic acid molecule in the sense orientation, is a well known methodology that produces coordinate silencing of the introduced nucleic acid molecule and the homologous endogenous gene (see, for example, Flavell, Proc. Natl. Acad. Sci.. USA 91:3490-3496 (1994) , which is incorporated herein by reference; Kooter and Mol, supra, 1993) .
  • cosuppression is unknown, cosuppression is induced most strongly by a large number of transgene copies or by overexpression of transgene RNA; cosuppression also can be enhanced by modification of the transgene such that it fails to be translated.
  • Cosuppression has been used successfully to produce sterile plants; for example, a sense nucleic acid molecule containing a full-length fbpl coding sequence under control of the strong CaMV 35S promoter has been introduced into petunia. Two of twenty-one transformants exhibited an abnormal phenotype and contained multiple copies of the fbpl transgene. Furthermore, fbpl expression was undetectable in these sterile transgenic plants, indicating that expression of endogenous fbpl was suppressed (Angenent et al., The Plant Journal 4:101-112 (1993) , which is incorporated herein by reference) .
  • Antisense nucleic acid molecules which can act by reducing mRNA translation or by increasing mRNA degradation, for example, also can suppress gene expression of diverse genes and seed plant species (see, for example, Kooter and Mol, Current Opin. Biol. 4:166-171 (1993) , which is incorporated herein by reference; see also Strauss et al . , supra , 1995) . Antisense nucleic acid molecules previously have been used to successfully suppress the expression of a homologous endogenous gene, thereby generating sterile plants.
  • an antisense chalcone synthase gene under control of the CaMV 35S promoter with an anther-specific enhancer sequence effectively suppressed endogenous chalcone synthase expression levels, resulting in male sterility in transgenic petunia plants (van der Meer et al . , The Plant Cell Vol 4:253-262 (1992) , which is incorporated herein by reference) .
  • the full-length tomato TM5 MADS box gene when placed in antisense orientation under control of the CaMV 35S promoter, was used to produce sterile transgenic tomato plants (Pnuell et al . , The Plant Cell Vol. 6, 175-186 (1994) , which is incorporated herein by reference) .
  • Antisense nucleic acid molecules encoding floral meristem identity gene products similarly can be used to produce reproductive sterility in seed plants; however, by preventing reproductive development at the earliest stage, the methods of the invention result in an advantageous energy savings.
  • the present invention provides a sterile transgenic seed plant such as an angiosperm or gymnosperm containing one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • a sterile transgenic seed plant such as an angiosperm or gymnosperm containing one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • the invention also provides, for example, a sterile transgenic seed plant containing a sense or antisense nucleic acid molecule encoding API, or a fragment thereof; a sense or antisense nucleic acid molecule encoding CAL, or a fragment thereof; and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • the invention further provides a sterile transgenic seed plant containing a sense or antisense nucleic acid molecule encoding API, or a fragment thereof, and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • the present invention also provides methods of producing reproductive sterility in a seed plant such as a tree by introducing into a seed plant one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • methods of producing reproductive sterility in a seed plant by introducing into a seed plant a sense or antisense nucleic acid molecule encoding API, or a fragment thereof; a sense or antisense nucleic acid molecule encoding CAL, or a fragment thereof; and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • the invention provides methods of producing reproductive sterility in a seed plant by introducing into a seed plant a sense or antisense nucleic acid molecule encoding API, or a fragment thereof, and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant .
  • the methods of the invention for producing reproductive sterility rely upon introducing into a seed plant one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
  • the skilled artisan will recognize that effective suppression of endogenous API and LFY gene product expression depends upon the one or more introduced nucleic acid molecules having a high percentage of homology with the corresponding endogenous gene loci.
  • the homology requirement for effective suppression using sense or antisense nucleic acid molecules can be determined empirically. In general, a minimum of about 80-90% nucleic acid sequence identity is preferred for effective suppression of endogenous floral meristem identity gene product expression.
  • a nucleic acid molecule encoding a gene ortholog from the family or genus of the seed plant species into which the nucleic acid molecule is to be introduced is preferable in practicing the methods of the invention. More preferably, a nucleic acid molecule encoding a gene ortholog from the same seed plant species into which the nucleic acid molecule is to be introduced is used in the methods of the invention.
  • the sense or antisense nucleic acid molecule need not contain the entire coding sequence of the floral meristem identity gene sequence to be suppressed.
  • a sense or antisense nucleic acid molecule encoding only a fragment of API, CAL or LFY coding sequence also can be useful in the methods of the invention.
  • the terms "sense” and “antisense” have their commonly understood meanings.
  • fragment means a portion of the nucleic acid sequence containing at least about 50 base pairs to the full-length of the nucleic acid molecule encoding the floral meristem identity gene product.
  • a fragment of a nucleic acid molecule encoding a floral meristem identity gene product need not encode a functional portion of a gene product.
  • the sense or antisense nucleic acid molecule is expressed under control of a strong promoter that is expressed, at least in part, in floral meristem.
  • a strong promoter that is expressed, at least in part, in floral meristem.
  • the constitutive cauliflower mosaic virus 35S promoter (Odell et al . , supra, 1985) , for example, or other strong promoters as disclosed herein, can be useful in the methods of the invention.
  • an RNA polymerase III promoter can be useful in methods of producing reproductive sterility using an antisense nucleic acid molecule (see, for example, Bourque and Folk, Plant Mol . Biol . 19:641-647 (1992) , which is incorporated herein by reference) .
  • the present invention also provides novel substantially purified nucleic acid molecules encoding floral meristem identity gene products.
  • the invention provides a substantially purified nucleic acid molecule encoding Brassica oleracea API having the amino acid sequence SEQ ID NO: 4; a substantially purified nucleic acid molecule encoding Brassica ol eracea var. botrytis API having the amino acid sequence SEQ ID NO: 6; or a substantially purified nucleic acid molecule encoding Zea mays API having the amino acid sequence SEQ ID NO: 8.
  • the invention provides a substantially purified nucleic acid molecule that encodes a Brassica ol eracea API, Brassica oleracea var.
  • botrytis API or Zea mays API contains additional 5' or 3 ' noncoding sequence.
  • a substantially purified nucleic acid molecule having a nucleotide sequence such as SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 7 is provided.
  • the term “substantially purified” means that the particular nucleic acid molecule or gene product is in a form that is relatively free from contaminating lipids, unrelated gene products, unrelated nucleic acids or other cellular material normally associated with the particular nucleic acid molecule or gene product in a cell.
  • the present invention also provides a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea API, Brassica oleracea var. botrytis API or Zea mays API, provided that said nucleotide sequence is not present in a nucleic acid molecule encoding a MADS domain containing protein.
  • a nucleotide sequence can have at least ten contiguous nucleotides of a nucleic acid molecule encoding an API gene product having the amino acid sequence of SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8.
  • a nucleotide sequence of the invention can have, for example, at least ten contiguous nucleotides of the nucleic acid sequence of SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 7.
  • nucleotide sequence of the invention has at least ten contiguous nucleotides of one of the recited nucleic acid molecules without any extraneous intervening nucleotides.
  • nucleotide sequence of the present invention is a nucleotide sequence having at least ten contiguous nucleotides that is present in a nucleic acid molecule encoding a MADS domain containing protein.
  • MADS domain containing proteins are well known in the art as described in Purugganan et al. , supra, 1995.
  • a nucleotide sequence of the invention can range in size from about 10 nucleotides to the full-length of a cDNA.
  • Such a nucleotide sequence can be chemically synthesized, using routine methods or can be purchased from a commercial source.
  • such a nucleotide sequence can be obtained by enzymatic methods such as random priming methods, polymerase chain reaction (PCR) methods or by standard restriction endonuclease digestion, followed by denaturation (Sambrook et al . , supra, 1989) .
  • a nucleotide sequence of the invention can be useful, for example, as a primer for PCR (Innis et al . (ed.) PCR Protocols: A Guide to Methods and Applications. San Diego, CA: Academic Press, Inc. (1990)) .
  • Such a nucleotide sequence generally contains from about 10 to about 50 nucleotides.
  • a nucleotide sequence of the invention also can be useful in screening a cDNA or genomic library to obtain a related nucleotide sequence.
  • a cDNA library that is prepared from rice or wheat can be screened with a nucleotide sequence having at least ten contiguous nucleotides of the nucleic acid molecule encoding Zea mays API (SEQ ID NO: 7) in order to isolate a rice or wheat ortholog of API .
  • a nucleotide sequence useful for screening a cDNA or genomic library contains at least about 14 to 16 contiguous nucleotides depending, for example, on the hybridization conditions to be used.
  • a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Zea mays API also can be used to screen a Zea mays cDNA library to isolate a sequence that is related to but distinct from API .
  • a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea API (SEQ ID NO: 3) or a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea var.
  • botrytis API (SEQ ID NO: 5) can be used to screen a Brassica oleracea or Brassica oleracea var. botrytis cDNA library to isolate a novel sequence that is related to but distinct from API .
  • a nucleotide sequence of the invention can be useful in analyzing RNA levels or patterns of expression, as by northern blotting or by in si u hybridization to a tissue section. Such a nucleotide sequence also can be used in Southern blot analysis to evaluate gene structure and identify the presence of related gene sequences.
  • the invention also provides a vector containing a nucleic acid molecule encoding a Brassica oleracea API gene product, Brassica oleracea var. botrytis API gene product or Zea mays API gene product.
  • a vector can be a cloning vector or an expression vector and provides a means to transfer an exogenous nucleic acid molecule into a host cell, which can be a prokaryotic or eukaryotic cell.
  • Such vectors are well known and include plasmids, phage vectors and viral vectors.
  • Various vectors and methods for introducing such vectors into a cell are described, for example, by Sambrook et al. , supra , 1989, and by Glick and Thompson, supra, 1993) .
  • the invention further provides a method of producing an API gene product by expressing a nucleic acid molecule encoding an API gene product.
  • a Brassica oleracea API gene product can be produced according to a method of the invention by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 4 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 3.
  • a Brassica oleracea var. botrytis API gene product can be produced according to a method of the invention by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 6 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 5.
  • a Zea mays API gene product can be produced by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 8 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 7.
  • the invention also provides a substantially purified API gene product, such as a substantially purified Brassica oleracea API gene product having amino acid sequence SEQ ID NO: 4; a substantially purified Brassica oleracea var. botrytis API gene product having amino acid sequence SEQ ID NO: 6; or a substantially purified Zea mays API gene product having amino acid sequence SEQ ID NO: 8.
  • a substantially purified API gene product such as a substantially purified Brassica oleracea API gene product having amino acid sequence SEQ ID NO: 4; a substantially purified Brassica oleracea var. botrytis API gene product having amino acid sequence SEQ ID NO: 6; or a substantially purified Zea mays API gene product having amino acid sequence SEQ ID NO: 8.
  • the term “gene product” is used in its broadest sense and includes proteins, polypeptides and peptides, which are related in that each consists of a sequence of amino acids joined by peptide bonds.
  • proteins generally consist of at least about 50 to 100 amino acids and that peptides generally consist of at least two amino acids up to a few dozen amino acids.
  • gene product as used herein includes any such amino acid sequence.
  • an active fragment of a floral meristem identity gene product also can be useful in the methods of the invention.
  • the term "active fragment,” means a polypeptide portion of a floral meristem identity gene product that can convert shoot meristem to floral meristem in an angiosperm.
  • An active fragment of an API gene product can consist, for example, of an amino acid sequence that is derived from SEQ ID NO: 2, SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8 and has activity in converting shoot meristem to floral meristem in an angiosperm.
  • An active fragment can be, for example, an amino terminal, carboxyl terminal or internal fragment of Zea mays API (SEQ ID NO: 8) that has activity in converting shoot meristem to floral meristem in an angiosperm.
  • an active fragment of a floral meristem identity gene product can be useful in the methods of the invention for converting shoot meristem to floral meristem in an angiosperm, for producing early reproductive development in a seed plant, or for producing reproductive sterility in a seed plant.
  • Such an active fragment can be produced using well known recombinant DNA methods (Sambrook et al., supra , 1989) .
  • an active fragment can be, for example, an amino terminal, carboxyl terminal or internal fragment of Arabidopsis thaliana CAL (SEQ ID NO: 10) or Brassica ol eracea CAL (SEQ ID NO: 12) that has activity, for example, in converting shoot meristem to floral meristem in an angiosperm.
  • the product of the BobCAL gene (SEQ ID NO: 24) which is truncated at amino acid 150, lacks activity in converting shoot meristem to floral meristem and, therefore, is an example of a polypeptide portion of a CAL floral meristem identity gene product that is not an "active fragment" of a floral meristem identity gene product.
  • An active fragment of a floral meristem identity gene product which can convert shoot meristem to floral meristem in an angiosperm, can be identified using the methods described in Examples I, II and III. Briefly, an angiosperm such as Arabidopsis can be transformed with a nucleic acid molecule encoding a portion of a floral meristem identity gene product in order to determine whether the portion can convert shoot meristem to floral meristem and, therefore, is an active fragment of a floral meristem identity gene product.
  • the invention further provides an antibody that specifically binds an API gene product having the amino acid sequence of Brassica oleracea API (SEQ ID NO: 4) ; the amino acid sequence of Brassica oleracea var . botrytis API (SEQ ID NO: 6) ; or the amino acid sequence of Zea mays API (SEQ ID NO: 8) .
  • an antibody is used in its broadest sense to include naturally occurring and non-naturally occurring polyclonal and monoclonal antibodies, as well as a polypeptide fragment of an antibody that retains a specific binding activity of at least about 1 x 10 5 M" 1 , and preferably about 1 x 10 6 M “1 , for an API gene product having amino acid sequence SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8.
  • an antibody fragment such as a Fab, F(ab') 2 or Fv fragment can retain specific binding activity for an API gene product and, thus, is included within the definition of an antibody.
  • a non-naturally occurring antibody, or fragment thereof, such as a chimeric antibody or humanized antibody also is included within the meaning of the term antibody.
  • a non-naturally occurring antibody can be constructed using solid phase peptide synthesis, produced recombinantly or obtained, for example, by screening a combinatorial library consisting of variable heavy chains and variable light chains as described by Huse et al . , Science 246:1275-1281 (1989) , which is incorporated herein by reference.
  • An antibody “specific for” a gene product, or that "specifically binds” a gene product, binds with substantially higher affinity to that gene product than to an unrelated gene product.
  • An antibody specific for a gene product also can have specificity for a related gene product.
  • an antibody specific for a Zea mays API gene product also can specifically bind an Arabidopsis thaliana API gene product or a Brassica oleracea API gene product.
  • An antibody that specifically binds a Zea mays API gene product can be prepared using a Zea mays API fusion protein or a synthetic peptide encoding a portion of Zea mays API (SEQ ID NO: 8) as an immunogen.
  • a Zea mays API fusion protein or a synthetic peptide encoding a portion of Zea mays API SEQ ID NO: 8 as an immunogen.
  • purified Zea mays API gene product which can be prepared from a natural source or produced recombinantly according to a method of the invention, or a fragment of a Zea mays API gene product, including a peptide portion of Zea mays API such as a synthetic peptide, can be used as an immunogen.
  • a non-immunogenic fragment or synthetic peptide derived from Zea mays API for example, can be made immunogenic by coupling the non-immunogenic fragment or peptide (hapten) to a carrier molecule such as bovine serum albumin (BSA) or keyhole limpet hemocyanin (KLH) .
  • BSA bovine serum albumin
  • KLH keyhole limpet hemocyanin
  • the invention also provides an expression vector containing a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY operably linked to a heterologous regulatory element.
  • Expression vectors are well known in the art and provide a means to transfer and express an exogenous nucleic acid molecule into a host cell.
  • an expression vector contains, for example, transcription start and stop sites such as a TATA sequence and a poly-A signal sequence, as well as a translation start site such as a ribosome binding site and a stop codon, if not present in the coding sequence.
  • heterologous regulatory element means a regulatory element derived from a different gene than the gene encoding the floral meristem identity gene product to which it is operably linked.
  • a vector containing a floral meristem identity gene contains a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a homolgous regulatory element .
  • Such a vector does not contain a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a heterologous regulatory element and, thus, is not an expression vector of the invention.
  • the invention further provides a plant expression vector containing a floral meristem identity gene product operably linked to a heterologous regulatory element.
  • a plant expression vector containing a nucleic acid molecule encoding an API gene product having at least about 70 percent amino acid identity with an amino acid sequence of Arabidopsis thaliana API (SEQ ID NO: 2) in the region from amino acid 1 to amino acid 163 or with the amino acid sequence of Zea mays API (SEQ ID NO: 8) in the region from amino acid 1 to amino acid 163 is provided.
  • a plant expression vector containing a floral meristem identity gene product operably linked to a constitutive regulatory element, such as the cauliflower mosaic virus 35S promoter is provided.
  • a plant expression vector containing a floral meristem identity gene product operably linked to an inducible regulatory element is provided.
  • a useful plant expression vector can contain a constitutive regulatory element for expression of an exogenous nucleic acid molecule in all or most tissues of a seed plant.
  • a constitutive regulatory element can be particularly advantageous because expression from the element is relatively independent of developmentally regulated or tissue-specific factors.
  • the cauliflower mosaic virus 35S promoter (CaMV 35S) is a well-characterized constitutive regulatory element that produces a high level of expression in all plant tissues (Odell et al . , Nature 313:810-812 (1985) , which is incorporated herein by reference) .
  • the CaMV 35S promoter can be particularly useful due to its activity in numerous different seed plant species (Benfey and Chua, Science 250:959-966 (1990) , which is incorporated herein by reference; Odell et al . , supra, 1985) .
  • Other constitutive regulatory elements useful for expression in a seed plant include, for example, the cauliflower mosaic virus 19S promoter; the Figwort mosaic virus promoter (Singer et al . , Plant Mol . Biol . 14:433 (1990) , which is incorporated herein by reference) ; and the nopaline synthase (nos) gene promoter (An, Plant Physiol . 81:86 (1986) , which is incorporated herein by reference) .
  • an expression vector of the invention can contain a regulated gene regulatory element such as a promoter or enhancer element.
  • a particularly useful regulated promoter is a tissue-specific promoter such as the shoot meristem-specific CDC2 promoter
  • the promoter of the SHOOTMERISTEMLESS gene which is expressed exclusively in the shoot meristem beginning within an embryo and throughout the angiosperm life cycle, also can be a particularly useful tissue-specific gene regulatory element (see Long et al . , Nature 379:66-69 (1996) , which is incorporated herein by reference) .
  • An appropriate regulatory element such as a promoter is selected depending on the desired pattern or level of expression of a nucleic acid molecule linked thereto.
  • a constitutive promoter which is active in all tissues, would be appropriate if expression of a gene product in all plant tissues is desired.
  • a developmentally regulated or tissue-specific regulatory element can be useful to direct floral meristem identity gene expression to specific tissues, for example.
  • inducible expression also can be particularly useful to manipulate the timing of gene expression such that, for example, a population of transgenic seed plants of the invention that contain an expression vector comprising a floral meristem identity gene linked to an inducible regulatory element can undergo early reproductive development at essentially the same time. Selecting the time of reproductive development can be useful, for example, in manipulating the time of crop harvest.
  • nucleic acid molecules encoding API provided herein, the skilled artisan can isolate, if desired, a novel ortholog of API. For example, one would choose a region of API that is highly conserved among known API sequences such as a region that is highly conserved between Arabidopsis API (SEQ ID NO: 1) and Zea mays API (GenBank accession number L46400; SEQ ID NO: 7) to screen a cDNA or genomic library of interest for a novel API ortholog. One can use a full-length
  • Arabidopsis API (SEQ ID NO: 1) , for example, to isolate a novel ortholog of API (see Example V) .
  • the region encoding the MADS domain which is common to a number of genes, can be excluded, from the sequence used as a probe.
  • a nucleic acid molecule encoding a full-length CAL cDNA such as Arabidopsis CAL (SEQ ID NO: 9) or Brassica oleracea CAL (SEQ ID NO: 11) can be useful in isolating a novel CAL ortholog.
  • the Arabidopsis API cDNA (SEQ ID NO: 1) can be used as a probe to identify and isolate a novel API ortholog.
  • a nucleic acid molecule encoding a novel API ortholog can be isolated from other plant species. Using methods such as those described by Purugganan et al. , supra , 1995, one can readily confirm that the newly isolated molecule is an API ortholog.
  • nucleic acid molecule encoding an API gene product which has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 2 ⁇ Arabidopsis API) in the region from amino acid 1 to amino acid 163 or with the amino acid sequence of SEQ ID NO: 8 ( Zea mays API) in the region from amino acid 1 to amino acid 163 can be isolated and identified using well known methods.
  • a region of CAL that is highly conserved among known CAL cDNAs such as a region conserved between Arabidopsis CAL (SEQ ID NO: 9) and Brassica oleracea CAL (SEQ ID NO: 11) .
  • the Arabidopsis CAL cDNA (SEQ ID NO: 9) or Brassica oleracea CAL cDNA (SEQ ID NO: 11) , or a nucleotide fragment thereof, can be used to identify and isolate a novel CAL ortholog using methods such as those described in Example V.
  • a nucleotide sequence derived from the MADS domain of API or CAL can be useful to isolate a related gene sequence encoding this DNA-binding motif.
  • Hybridization conditions for isolating a gene ortholog are relatively stringent such that non-specific hybridization is minimized.
  • Appropriate hybridization conditions can be determined empirically, or can be estimated based, for example, on the relative G+C content of the probe and the number of mismatches between the probe and target sequence, if known.
  • Hybridization conditions can be adjusted as desired by varying, for example, the temperature of hybridizing or the salt concentration (Sambrook, supra, 1989) .
  • the invention also provides a kit for converting shoot meristem to floral meristem in an angiosperm, which contains a plant expression vector having a nucleic acid molecule encoding a floral meristem identity gene product.
  • a kit for promoting early reproductive development in a seed plant which contains a plant expression vector having a nucleic acid molecule encoding a floral meristem identity gene product, also is provided.
  • such kits can contain appropriate reagents to facilitate high efficiency transformation of a seed plant with a plant expression vector of the invention.
  • a control vector lacking a floral meristem identity gene can be included in the kits to determine, for example, the efficiency of transformation.
  • This example describes methods for producing a transgenic Arabidopsis plant containing ectopically expressed API .
  • Transgenic plants that constitutively express API from the cauliflower mosaic virus 35S (CaMV 35S) promoter were produced to determine whether ectopic API expression was sufficient to convert shoot meristem to floral meristem.
  • the API coding sequence was placed under control of the CaMV 35S promoter (Odell et al . , supra , 1985) as follows.
  • Bam HI linkers were ligated to the Hinc II site of the full-length API complementary DNA (Mandel et al . , supra, (1992) , which is incorporated herein by reference) in pAM116, and the resulting Bam HI fragment was fused to the CaMV 35S promoter (Jack et al . , ££11 76:703-716 (1994) , which is incorporated herein by reference) in pCGNl ⁇ to create pAM563.
  • Transgenic 35S -API Arabidopsis plants of the Columbia ecotype were generated by selecting kana ycin-resistant plants after Agrobacterium-mediated plant transformation using the in planta method (Bechtold et al., CR. Acad. Sci. Paris 316:1194-1199 (1993) , which is incorporated herein by reference) . All analyses were performed in subsequent generations. Approximately 120 independent transgenic lines that displayed the described phenotypes were obtained.
  • E LEAFY is not required for the conversion of inflorescence s QPts to flowers j n fl ⁇ APETALAl transgenic plant
  • the 35S-API transgene was introduced into Arabidopsis Ify mutants.
  • the 35S-AP1 transgene was crossed into the strong lfy- 6 mutant background and the F 2 progeny were analyzed.
  • API also is involved in specifying sepal and petal identity at a later stage in flower development.
  • API RNA initially is expressed throughout the young flower primordium, it is later excluded from stamen and carpel primordia (Mandel et al . , supra , 1992) .
  • the CaMV 35S promoter is active in all floral organs, 35S-AP1 transgenic plants are likely to ectopically express API in stamens and carpels.
  • the normal stamens and carpels 35S-AP1 in transgenic plants indicate that API is not sufficient to specify sepal and petal organ fate.
  • Wild-type Arabidopsis plants have a vegetative phase 100 during which a basal rosette of leaves is produced, followed by the transition to reproductive growth. The transition from vegetative to reproductive growth was measured both in terms of the number of days post-germination until the first visible flowers were observed, and by counting the number of leaves. Under continuous light, wild-type and 35S-AP1 transgenic plants flowered after producing 9.88 ⁇ 1.45 and 4.16+0.97 leaves, respectively. Under short-day growth conditions (8 hours light, 16 hours dark, 24 C) , wild-type and 35S-AP1 transgenic plants flowered after producing 52.42 ⁇ 3.47 and 7.4 ⁇ 1.18 leaves, respectively.
  • This example describes methods for producing a transgenic Arabidopsis plant that ectopically expresses CAL.
  • Transgenic Arabidopsis plants that ectopically express CAL in shoot meristem were generated.
  • the full-length CAL cDNA was inserted downstream of the CaMV 35S promoter in the Eco RI site of pMON530 (Monsanto Co., St. Louis, Missouri)
  • This plasmid was introduced into Agrobacterium strain ASE and used to transform the Columbia ecotype of Arabidopsis using the modified vacuum infiltration method described by Bechtold et al . , supra, 1993.
  • the 96 transgenic lines that harbored the 35S-CAL construct had a range of weak to strong phenotypes .
  • Transgenic plants with the strongest phenotypes (27 lines) had a phenotype that closely resembled the tfl mutant phenotype.
  • 35S-CAL transgenic plants were converted into flowers. Furthermore, the 35S-CAL transgenic plants were characterized by early reproductive development, as indicated by an early flowering phenotype. These results demonstrate that ectopic expression of CAL is sufficient for the conversion of shoots to flowers and for promoting early reproductive development.
  • This example describes methods for producing transgenic Arabidopsis ectopically expressing LFY and transgenic aspen ectopically expressing LFY.
  • Transgenic Arabidopsis plants were generated by transforming Arabidopsis with LFY under the control of the CaMV 35S promoter (Odell et al . , supra , (1985)) .
  • a LFY complementary DNA (Weigel et al, Cell 69:843-859 (1992) , which is incorporated herein by reference) was inserted into a T-DNA transformation vector containing a CaMV 35S promoter and a 3' nos cassette (Jack et al . , supra , 1994) .
  • Transformed seedlings were selected for kanamycin resistance.
  • Several hundred Arabidopsis transformants in three different genetic backgrounds (Nossen, Wassilewskija and Columbia) were recovered, and several lines were characterized in detail.
  • 35S -LFY transgenic plants lines demonstrated a very similar, dominant and heritable phenotype. Secondary shoots that arose in lateral positions were consistently replaced by solitary flowers, and higher-order shoots were absent. Although the number of rosette leaves was unchanged from the wild type, 35S -LFY plants flowered earlier than wild type: the solitary flowers in the axils of the rosette leaves developed and opened precociously. In addition, the primary shoot terminated with a flower. In 35S-LFY transgenics having the most extreme phenotypes, a terminal flower was formed immediately above the rosette.
  • Hybrid aspen was transformed exactly as described by Nilsson et al . (Transgen. Res. 1:209-220 (1992) , which is incorporated herein by reference) .
  • Levels of LFY RNA expression were similar to those of 35S -LFY Arabidopsis, as determined by northern blot analysis. The number of vegetative leaves varied between different regenerating shoots, and those with a higher number of vegetative leaves formed roots, allowing for transfer to the greenhouse.
  • Individual flowers were removed either from primary transformants that had been transferred to the greenhouse, or from catkins collected in spring, 1995, at Carlshem, Umea, Sweden) from a tree whose age was determined by counting the number of annual rings in a core extracted with an increment borer at 1.5 meters above ground level . Flowers were fixed in formaldehyde/acetic acid/ethanol and destained in ethanol before photography.
  • 35S -LFY transgenic aspen was similar to that of 35S -LFY Arabidopsis .
  • flowers normally are formed in lateral positions on inflorescence shoots.
  • these inflorescence shoots called catkins, arise from the leaf axils of adult trees.
  • solitary flowers were formed instead of shoots in the axils of vegetative leaves.
  • the secondary shoots of transgenic aspen were more severely affected than the primary shoot.
  • This example describes the construction and characterization of an APl-glucocorticoid receptor ligand binding domain chimera and its dexamethasone-inducible activity in Arabidopsis .
  • a nucleic acid molecule encoding an APl-glucocorticoid receptor ligand binding domain chimera was prepared as follows. Primers corresponding to the translation initiation and termination codons of API were synthesized for PCR amplification of the Arabidopsis API cDNA. Primer 5 ' -GGATCCGGATCAAAAATGGGAAGGGGTAG-3 ' (SEQ ID NO: 25) contains a translation initiation codon, which is indicated by underlining.
  • Primer 5 ' -GGATCCGCTGCGGCGAAGCAGCCAAGGTTG-3 ' contains a modified translation termination site, which is indicated by underlining and allows the nucleic acid molecule encoding API to be linked in frame to the nucleic acid molecule encoding the glucocorticoid receptor (GR) ligand binding domain.
  • GR glucocorticoid receptor
  • the resulting AP1-GR construct was introduced into Agrobacterium strain ASE, and apl -15 mutant plants were transformed using the vacuum infiltration method described in Example I . Approximately 100 independently derived lines were selected in kanamycin for further analysis.
  • Kanamycin-resistant transgenic Arabidopsis lines are analyzed in subsequent generations for API activity. After application of dexamethasone to transgenic plants, API activity is monitored by visual inspection for 1) flowering that is earlier than wild-type or 2) partial or complete rescue of the apl mutant phenotype.
  • dexamethasone-inducible activity plants are watered with varying concentrations of dexamethasone. A range of dexamethasone concentrations are tested to determine overall levels of API activity and to determine the resulting phenotypes. A concentration of 1 ⁇ M or less dexamethasone preferably is used for induction of API activity.
  • dexamethasone is applied directly to plants by spraying. Spraying, like watering, leads to a significant induction of API activity, resulting in the corresponding rescue of the apl mutant phenotype and early reproductive development. Although a single application of dexamethasone is sufficient to increase API activity and promote early reproductive development, dexamethasone is applied either once, or repeatedly, and the treatments compared for any observed differences under long or short day conditions as disclosed below.
  • Dexamethasone is applied to plants at various times post-germination. For example, a large number of AP1-GR transgenic Arabidopsis plants are grown, some of which are treated with dexamethasone on day 1 post-germination, some on day 2, etc., all the way up until and beyond the time at which Arabidopsis plants normally flower. These analyses include plants grown under long day, short day, and under a variety of temperatures. For example, Arabidopsis plants, which typically are grown at 25°C, also can be analyzed for API activity at 20°C and 15°C (see, for example, Bowman et al .
  • This example describes the isolation and characterization of Zea mays ZAP1 complementary DNA, which is an ortholog of the Arabidopsis floral meristem identity gene API .
  • Double-stranded sequencing was performed using the Sequenase Version 2.0 kit (U.S. Biochemical, Cleveland, Ohio) according to the manufacturer's protocol.
  • the nucleotide sequence and deduced amino acid sequence of the ZAPl cDNA are provided as SEQ ID NOS: 7 and 8.
  • the deduced amino acid sequence for ZAP2 shares 89% identity with Arabidopsis API through the MADS domain (amino acids 1 to 57) and 70% identity through the first 160 amino acids, which includes the K domain.
  • the high level of amino acid sequence identity between ZAPl and API (SEQ ID NOS: 8 and 2), as well as the expression pattern of ZAPl in maize florets (see below) , indicate that ZAPl is the maize ortholog of Arabidopsis API .
  • RNA concentration and purity was determined by absorbance at 260/280 nM, and equal amounts (10 ⁇ g) were fractionated on formaldehyde-agarose gels. Gels were stained in a solution of 0.125 ⁇ g ml "1 acridine orange to confirm the integrity of the RNA samples and the uniformity of gel loading, then RNA was blotted on to Hybond-N ® membranes (Amersham International, Arlington Heights, Illinois) according to the manufacturer's instructions. Prehybridization and hybridization solutions were prepared as previously described (Schmidt et al., Science 238:960-963 (1987), which is incorporated herein by reference) .
  • the probe for ZAPl RNA expression studies was a 445 bp Sac 1/ Nsi I fragment from the 3' end of the cDNA. Southern blot analyses were conducted to establish conditions for specific hybridization of this probe. No cross-hybridization was detected using hybridization at 60°C in 50% formamide and washes at 65°C in O.lx SSC and 0.5% SDS.
  • ZAPl was the ortholog of this Arabidopsis floral meristem identity gene.
  • a blot of total RNA from vegetative and reproductive organs was hybridized with a gene-specific fragment of the ZAPl cDNA (nucleotides 370 to 820 of SEQ ID NO: 7) .
  • ZAPl RNA was detected only in male and female inflorescences and in the husk leaves that surround the developing ear. No ZAPl RNA expression was detectable in RNA isolated from root, shoot, leaf, endosperm, or embryo tissue. The restriction of ZAPl expression to terminal and axillary inflorescences is consistent with ZAPl being the Arabidopsis API ortholog.
  • the exclusion of ZAPl expression from stamens and carpels and its inclusion in the RNA of the non-reproductive portions of the floret is similar to the pattern of expression of API in flowers of Arabi dopsi s .
  • This example demonstrates the production and characterization of antisera that specifically binds the Arabidopsis API gene product.
  • Western blotting was performed with plant tissue extracts and crude antisera from rabbits immunized with a GST-API fusion protein encoding amino acids 190 to 251 of Arabidopsis thaliana API (SEQ ID NO: 2) .
  • the C-terminal region of API spanning amino acids 190 to 251 does not include the MADS domain, which is common to a number of proteins.
  • the anti-API sera reacted with a 90 kDa protein in inflorescence tissue extracts prepared from wild type Arabidopsis thaliana (Landsburg ecotype) .
  • this reactivity was absent from Arabidopsis mutants lacking API such as apl -1 or apl - 15 (compare lanes 3 and 4 to lane 2) .
  • API expression was reduced significantly in inflorescence tissue extracts from the Arabidopsis ap2-2 mutant as compared to wild type plants, indicating that AP2 normally functions to increase or maintain the level of API RNA or protein expression (see lanes 2 and 5) .
  • reduced API expression in lfy- 6 mutant plants indicates that LFY normally functions to enhance expression of API at the RNA or protein level (see lanes 2 and 6) .
  • API protein expression in inflorescence tissue from ag-2 mutants is enhanced strikingly as compared to the level of API protein seen in wild type inflorescences (see lanes 1 and 2) .
  • AGAMOUS gene product negatively regulates API RNA or protein expression.
  • Western analysis further demonstrated that API protein expression is specific to inflorescence tissue since API reactivity is absent from leaf tissue prepared from wild type Arabidopsis plants (Columbia ecotype; lane 7) .
  • API protein expression readily was detectable in leaf tissue as shown in lane 8.
  • Reactivity of the anti-API antisera in 35S-AP1 transgenic leaves but not in wild type Arabidopsis leaves confirmed the specificity of the anti-API sera.
  • a Sty I fragment of the Arabidopsis thaliana API cDNA which encodes amino acids 190 to 251 was gel purified, blunt ended with Klenow fragment and ligated into the Sma I site of pGEX3X (Pharmacia, Piscataway, NJ) to make pGEX-APl 190 _ 2S i for expression of a GST-AP1 190 . 2S1 fusion protein.
  • DH5 E. coli were transformed with the resulting vector by standard techniques (Sambrook, supra , 1989) .
  • a bacterial culture of a pGEX-APl 190-251 transformant was grown to an OD 600 of 0.5, and GST-AP1 190 _ 251 expression was induced by addition of ImM IPTG.
  • the GST-AP1 190-251 bacterial pellet was harvested after three hours growth at 37°C, washed once with phosphate-buffered saline (PBS; pH 7.2) and lysed by two cycles of freeze-thawing.
  • PBS phosphate-buffered saline
  • the cell lysate was resuspended in one-fiftieth of the culture volume in ice cold EB (2 mM EDTA, 2mM DTT, 1 mM PMSF, 5 ⁇ g/ml leupeptin, 7.5 ⁇ g/ml pepstatin, 1% aprotinin in PBS pH 7.2) with 2 mg/ml lysozyme and incubated on ice for 30 minutes. Triton X-100 was added to 1%, and the solution was sonicated mildly. The extract was clarified by two successive centrifugations of 1 and 15 minutes, respectively, at 13,000 x g in a microfuge.
  • the GST-AP1 190 _ 251 fusion protein was purified from the bacterial extract as follows. Glutathione-Sepharose beads (150 ⁇ l) , which had been pre-equilibrated in EB with 1% Triton X-100, were added to 1 ml of soluble extract in an Eppendorf tube and incubated on a rotating wheel for 60 minutes at 4°C. The beads were washed five times in 1 ml EB with 1% Triton X-100; resuspended in protein sample buffer and loaded on a preparative SDS-PAGE gel (Laemmli, Nature 227:680-685 (1970) , which is incorporated herein by reference) .
  • GST-AP1 190 _ 251 fusion protein was cut out of the gel and electroeluted in 0.5X transfer buffer for 3 hours at 100V as described in Harlow and Lane, supra , 1988.
  • the GST-AP1 190-251 fusion protein was emulsified with Freund's adjuvant and injected into rabbits by Immunodynamics (La Jolla, CA) .
  • Plant protein extracts for western analysis were prepared by homogenizing 100 ⁇ l plant tissue with 200 ⁇ l 2XFSB (Laemmli, supra , 1970) in a Kontes microfuge tube with a pistil. The extract was denatured in boiling water bath for 5 minutes, sonicated for 1 minute and clarified by two successive spins of 5 and 15 minutes in a microfuge at 13 '000 x g prior to electophoresis.
  • This example demonstrates the use of cosuppression to inhibit endogenous API activity in Arabidopsis .
  • the full length API cDNA from pAM116 was inserted into the Eco RI site of pMON530, and the resulting construct was introduced into Agrobacterium strain ASE. Wild type Arabidopsis was transformed as described in Example I and analyzed for apl mutant phenotypes. In this way, a large number of independently generated cosuppressed lines were generated. Each of the cosuppressed lines had a phenotype similar or identical to apl -1 mutant plants, which lack API activity, indicating that the activity of both the introduced and endogenous copies of API was suppressed.
  • API expression levels by RNA in si tu hybridization demonstrated that API expression was reduced and delayed in the cosuppressed transgenic lines having the apl mutant phenotype. Futher ore, in a sa ll fraction of the cosuppressed transgenic lines, a enhanced phenotype resembling the cauliflower phenotype was observed. This enhanced phenotype indicated that introduction of an API construct can supress expression of both endogenous API and CAL.
  • NAME Campbell, Cathryn A.
  • GGC CAC AAT ATG CCT CCC CCT CTG CCA CCG CAG CAG CAC CAA ATC CAG 744 Gly His Asn Met Pro Pro Pro Leu Pro Pro Gin Gin His Gin He Gin 195 200 205
  • CAG CCA TCT CCT TTT CTC AAC ATG GGG GGG CTG TAT CAA GAA GAA GAT 725 Gin Pro Ser Pro Phe Leu Asn Met Gly Gly Leu Tyr Gin Glu Glu Asp 215 220 225 230
  • GTTACTGCCC AGTTACCCTT GAATCTAGCG GCGCTTTTGG TGAGAGGGTG CAGTTTACTT 1288
  • AAG GTA CTA GAA CAC TAC GAG AGG TAC TCT TAC GCC GAG AAA CAG CTA 240 Lys Val Leu Glu His Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Gin Leu 65 70 75 80
  • AAA AAT CAA CTA ATG CAC GAG TCC CTC AAC CAC CTC CAA AGA AAG GAG 480 Lys Asn Gin Leu Met His Glu Ser Leu Asn His Leu Gin Arg Lys Glu 145 150 155 160
  • MOLECULE TYPE protein
  • GCC GTT AGA GCT GAA CGG AGA CGA TTG CAA GAA GAG GAG GAA GAG GAA 446 Ala Val Arg Ala Glu Arg Arg Arg Leu Gin Glu Glu Glu Glu Glu Glu Glu 110 115 120 125
  • ATC TGG GAC GTT CAT GCC ATC CCG CCA TCG GTC CAG TCG CAC CTT CAG 1008
  • GTC AAA AGG GAA GGG AAC TCC AGT CAG AAC TGG CAA CGG TTT TAC CAA 672 Val Lys Arg Glu Gly Asn Ser Ser Gin Asn Trp Gin Arg Phe Tyr Gin 210 215 220

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Abstract

The present invention provides a non-naturally occuring seed plant such as a transgenic angiosperm or gymnosperm that contains an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product. The invention further provides a method of converting shoot meristem to floral meristem in an angiosperm by ectopically expressing a floral meristem identity gene product in the angiosperm. In addition, the invention provides a method of promoting early reproductive development in a seed plant by ectopically expressing a floral meristem identity gene product in the seed plant.

Description

SEED PLANTS EXHIBITING EARLY REPRODUCTIVE DEVELOPMENT AND
METHODS OF MAKING SAME
This work was supported by grant DCB-9018749 awarded by the National Science Foundation and by grant USDA 93-37304 awarded by the United States Department of
Agriculture. The United States Government has certain rights in this invention.
BACKGROUND OF THE INVENTION
FIELD OF THE INVENTION
This invention relates generally to the field of plant genetic engineering and more specifically to genes involved in the regulation of plant reproductive development .
BACKGROUND INFORMATION
A flower is the reproductive structure of a flowering plant. Following fertilization, the ovary of the flower becomes a fruit and bears seeds. As a practical consequence, production of fruit and seed-derived crops such as grapes, beans, corn, wheat, rice and hops is dependent upon flowering.
Early in the life cycle of a flowering plant, vegetative growth occurs, and roots, stems and leaves are formed. During the later period of reproductive growth, flowers as well as new shoots or branches develop. However, the factors responsible for the transition from vegetative to reproductive growth, and the onset of flowering, are poorly understood.
A variety of external signals, such as length of daylight and temperature, affect the time of flowering. The time of flowering also is subject to genetic controls that prevent young plants from flowering prematurely. Thus, the pattern of genes expressed in a plant is an important determinant of the time of flowering.
Given these external signals and genetic controls, a relatively fixed period of vegetative growth precedes flowering in a particular plant species. The length of time required for a crop to mature to flowering limits the geographic location in which it can be grown and can be an important determinant of yield. In addition, since the time of flowering determines when a plant is reproductively mature, the pace of a plant breeding program also depends upon the length of time required for a plant to flower.
Traditionally, plant breeding involves generating hybrids of existing plants, which are examined for improved yield or quality. The improvement of existing plant crops through plant breeding is central to increasing the amount of food grown in the world since the amount of land suitable for agriculture is limited. For example, the development of new strains of wheat, corn and rice through plant breeding has increased the yield of these crops grown in underdeveloped countries such as Mexico, India and Pakistan. Unfortunately, plant breeding is inherently a slow process since plants must be reproductively mature before selective breeding can proceed.
For some plant species, the length of time needed to mature to flowering is so long that selective breeding, which requires several rounds of backcrossing progeny plants with their parents, is impractical. For example, perennial trees such as walnut, hickory, oak, maple and cherry do not flower for several years after planting. As a result, breeding of such plant species for insect or disease-resistance or to produce improved wood or fruit, for example, would require decades, even if only a few rounds of selection were performed.
Methods of promoting early reproductive development can make breeding of long generation seed plants such as trees practical for the first time. Methods of promoting early reproductive development also would be useful for shortening growth periods, thereby broadening the geographic range in which a crop such as rice, corn or coffee can be grown. Unfortunately, methods for promoting early reproductive development in a seed plant have not yet been described. Thus, there is a need for methods that promote early reproductive development. The present invention satisfies this need and provides related advantages as well. SUMMARY OF THE INVENTION
The present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene. For example, the invention provides a transgenic seed plant containing a first ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product such as APETALAl (API) , CAULIFLOWER (CAL) or LEAFY (LFY) . A transgenic seed plant of the invention can be, for example, an angiosperm such as a cereal plant, leguminous plant, oilseed plant, hardwood tree, fruit-bearing plant or ornamental flower or a gymnosperm such as a coniferous tree.
The invention further provides a method of converting shoot meristem to floral meristem in an angiosperm by ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product. For example, the invention provides a method of converting shoot meristem to floral meristem by introducing a first nucleic acid molecule encoding a first floral meristem identity gene product into an angiosperm such that the floral meristem identity gene product is ectopically expressed in the angiosperm. Thus, a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY can be introduced into an angiosperm, such that expression of the nucleic acid molecule in shoot meristem results in conversion of shoot meristem to floral meristem.
The invention further provides a method of promoting early reproductive development in a seed plant by ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product in the plant. For example, the invention provides a method of promoting early reproductive development in a seed plant by introducing a first nucleic acid molecule encoding a first floral meristem identity gene product into the seed plant such that the floral meristem identity gene product is ectopically expressed in the seed plant . A nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY, for example, can be ectopically expressed in a seed plant prior to the time an endogenous floral meristem identity gene product is expressed to promote early reproductive development in the seed plant .
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 illustrates a western-blot analysis of tissues from wild type and mutant Arabidopsiε plants with anti-API antisera. DETAILED DESCRIPTION OF THE INVENTION
The present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene. For example, the invention provides a transgenic seed plant containing a first ectopically expressible floral meristem identity gene product such as APETALAl (API) , CAULIFLOWER (CAL) or LEAFY (LFY) . A transgenic seed plant can be, for example, an angiosperm such as a cereal plant, leguminous plant, oilseed plant, hardwood tree, fruit-bearing plant or ornamental flower or a gymnosperm such as a coniferous tree.
A flower, like a leaf or shoot, is derived from the shoot apical meristem, which is a collection of undifferentiated cells set aside during embryogenesis. The production of vegetative structures, such as leaves or shoots, and of reproductive structures, such as flowers, is temporally segregated, such that a leaf or shoot arises early in a plant life cycle, while a flower develops later. The transition from vegetative to reproductive development is the consequence of a process termed floral induction (Yanofsky, Ann. Rev. Plant
Physiol . Plant Mol. Biol. 46:167-188 (1995) , which is incorporated herein by reference) . Once induced, shoot apical meristem either persists and produces floral meristem, which gives rise to flowers, and lateral meristem, which gives rise to branches, or is itself converted to floral meristem. Floral meristem differentiates into a single flower having a fixed number of floral organs in a whorled arrangement. Dicots, for example, contain four whorls (concentric rings), in which sepals (first whorl) and petals (second whorl) surround stamens (third whorl) and carpels (fourth whorl) .
Although shoot meristem and floral meristem both consist of meristemic tissue, shoot meristem is distinguishable from the more specialized floral meristem. Shoot meristem generally is indeterminate and gives rise to an unspecified number of floral and lateral meristems. In contrast, floral meristem is determinate and gives rise to the fixed number of floral organs that comprise a flower.
By convention herein, a wild-type gene sequence is represented in upper case italic letters (for example, APETALAl) , and a wild-type gene product is represented in upper case non-italic letters (APETALAl) . Further, a mutant gene allele is represented in lower case italic letters (api) , and a mutant gene product is represented in lower case non-italic letters (api) .
Genetic studies have identified a number of genes involved in regulating flower development. These genes can be classified into different groups depending on their function. Flowering time genes, for example, are involved in floral induction and regulate the transition from vegetative to reproductive growth. In comparison, the floral meristem identity genes, which are the subject matter of the present invention as disclosed herein, encode proteins that promote the conversion of shoot meristem to floral meristem in an angiosperm. In addition, floral organ identity genes encode proteins that determine whether sepals, petals, stamens or carpels are formed during floral development (Yanofsky, supra , 1995; Weigel, Ann. Rev. Genetics 29:19-39 (1995) , which is incorporated herein by reference) . Some of the floral meristem identity gene products also have a role in specifying floral organ identity.
Floral meristem identity genes have been identified by characterizing genetic mutations that prevent or alter floral meristem formation. Among floral meristem identity gene mutations in Arabidopsis thaliana , those in the gene LEAFY (LFY) generally have the strongest effect on floral meristem identity. Mutations in LFY completely transform the basal-most flowers into secondary shoots and have variable effects on later-arising (apical) flowers. In comparison, mutations in the floral meristem identity gene APETALAl (API ) result in replacement of a few basal flowers by inflorescence shoots that are not subtended by leaves . An apical flower produced in an api mutant has an indeterminate structure, in which a flower arises within a flower. These mutant phenotypes indicate that both API and LFY contribute to establishing the identity of the floral meristem although neither gene is absolutely required. The phenotype of lfy api double mutants, in which structures with flower-like characteristics are very rare, indicates that LFY and API encode partially redundant activities.
In addition to the LFY and API genes, a third locus that greatly enhances the apl mutant phenotype has been identified in Arabidopsis . This locus, designated CAULIFLOWER (CAL) , derives its name from the resulting "cauliflower" phenotype, which is strikingly similar to the common garden variety of cauliflower (Kempin et al . , Science 267:522-525 (1995), which is incorporated herein by reference) . In an apl cal double mutant, floral meristem behaves as shoot meristem in that there is a massive proliferation of meristems in the position that normally would be occupied by a single flower. However, an Arabidopsis mutant lacking only CAL, such as cal -1 , has a normal phenotype, indicating that API can substitute for the loss of CAL in these plants. In addition, because floral meristem that forms in an apl mutant behaves as shoot meristem in an apl cal double mutant, CAL can largely substitute for API in specifying floral meristem. These genetic data indicate that CAL and API encode activities that are partially redundant in converting shoot meristem to floral meristem.
Other genetic loci play at least minor roles in specifying floral meristem identity. For example, although a mutation in APETALA2 (AP2) alone does not result in altered inflorescence characteristics, ap2 apl double mutants have indeterminate flowers (flowers with shoot-like characteristics; Bowman et al . , Development 119:721-743 (1993), which is incorporated herein by reference) . Also, mutations in the CLAVATA1 ( CLV1) gene result in an enlarged meristem and lead to a variety of phenotypes (Clark et al . , Development 119:397-418 (1993)) . In a clvl apl double mutant, formation of flowers is initiated, but the center of each flower often develops as an indeterminate inflorescence. Thus, mutations in CLAVATA1 result in the loss of floral meristem identity in the center of wild-type flowers. Genetic evidence also indicates that the gene product of UNUSUAL FLORAL ORGANS (UFO) plays a role in determining the identity of floral meristem. Additional floral meristem identity genes associated with altered floral meristem formation remain to be isolated.
Mutations in another locus, designated TERMINAL FLOWER (TFL) , produce phenotypes that generally are reversed as compared to mutations in the floral meristem identity genes. For example, tfl mutants flower early, and the indeterminate apical and lateral meristems develop as determinate floral meristems (Alvarez et al . , Plant J. 2:103-116 (1992)) . These characteristics indicate that the TFL promotes maintenance of shoot meristem. TFL also acts directly or indirectly to negatively regulate API and LFY expression in shoot meristem since these API and LFY are ectopically expressed in the shoot meristem of tfl mutants (Gustafson-Brown et al . , £e_l 76:131-143 (1994) ; Weigel et al . , Cell 69:843-859 (1992)) . It is recognized that a plant having a mutation in TFL can have a phenotype similar to a non-naturally occurring seed plant of the invention. Such tfl mutants, however, which have a mutation in an endogenous TERMINAL FLOWER gene, are explicitly excluded from the scope of the present invention.
The results of such genetic studies indicate that several floral meristem identity gene products, including API, CAL and LFY, act redundantly to convert shoot meristem to floral meristem in an angiosperm. As disclosed herein, ectopic expression of a single floral meristem identity gene product such as API, CAL or LFY is sufficient to convert shoot meristem to floral meristem in an angiosperm. Thus, the present invention provides a non-naturally occurring seed plant such as an angiosperm or gymnosperm that contains a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that such ectopic expression is not due to a mutation in an endogenous TERMINAL FLOWER gene.
As disclosed herein, an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be, for example, a transgene encoding a floral meristem identity gene product under control of a heterologous gene regulatory element. In addition, such an ectopically expressible nucleic acid molecule can be an endogenous floral meristem identity gene coding sequence that is placed under control of a heterologous gene regulatory element. The ectopically expressible nucleic acid molecule also can be, for example, an endogenous floral meristem identity gene having a modified gene regulatory element such that the endogenous floral meristem identity gene is no longer subject to negative regulation by TFL.
The term "ectopically expressible" is used herein to refer to a nucleic acid molecule encoding a floral meristem identity gene product that can be expressed in a tissue other than a tissue in which it normally is expressed or at a time other than the time at which it normally is expressed, provided that the floral meristem identity gene product is not expressed from its native, naturally occurring promoter. Ectopic expression of a floral meristem identity gene product is a result of the expression of the gene coding region from a heterologous promoter or from a modified variant of its own promoter, such that expression of the floral meristem identity gene product is no longer in the tissue in which it normally is expressed or at the time at which it normally is expressed. An exogenous nucleic acid molecule encoding an API gene product under control of its native, wild type promoter, for example, does not constitute an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product. However, a nucleic acid molecule encoding an API gene product under control of a constitutive promoter, which results in expression of API in a tissue such as shoot meristem where it is not normally expressed, is an ectopically expressible nucleic acid molecule as defined herein. Actual ectopic expression of a floral meristem identity gene is dependent on various factors and can be constitutive or inducible expression. For example, API, which normally is expressed in floral meristem, is ectopically expressible in the shoot meristem of an angiosperm. As disclosed herein, when a floral meristem identity gene product such as API, CAL or LFY is ectopically expressed in shoot meristem in an angiosperm, the shoot meristem is converted to floral meristem and early reproductive development can occur (see Examples I, III and IV) .
An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be expressed prior to the time in development at which the corresponding endogenous gene normally is expressed. For example, an Arabidopsis plant grown under continuous light conditions expresses API just prior to day 18, when normal reproductive development (flowering) begins. However, as disclosed herein, API can be ectopically expressed in shoot meristem prior to day 18, resulting in early conversion of shoot meristem to floral meristem and early reproductive development. As disclosed in Example ID, a transgenic Arabidopsis plant that ectopically expresses API in shoot meristem under control of a constitutive promoter can flower at day 10, which is earlier than the time of reproductive development for a non-transgenic plant grown under the same conditions (day 18) . It is recognized that in some transgenic seed plants containing, for example, an exogenous nucleic acid molecule encoding API under control of a constitutive promoter, neither the exogenous nor endogenous API will be expressed. Such transgenic plants in which API gene expression is cosuppressed, although not characterized by early reproductive development, also can be valuable as disclosed below.
As used herein, the term "floral meristem identity gene product" means a gene product that promotes conversion of shoot meristem to floral meristem in an angiosperm. As disclosed herein in Examples I, II and III, expression of a floral meristem identity gene product such as API, CAL or LFY in shoot meristem can convert shoot meristem to floral meristem in an angiosperm. Furthermore, ectopic expression of a floral meristem identity gene product also can promote early reproductive development (see Example ID) .
A floral meristem identity gene product is distinguishable from a late flowering gene product or an early flowering gene product. The use of a late flowering gene product or an early flowering gene product is not encompassed within the scope of the present invention. In addition, reference is made herein to an "inactive" floral meristem identity gene product, as exemplified by the product of the Brassica oleracea var. Jbotrytis CAL gene (BobCAL) (see below) . Expression of an inactive floral meristem identity gene product in an angiosperm does not result in the conversion of shoot meristem to floral meristem in the angiosperm. An inactive floral meristem identity gene product such as BobCAL is excluded from the meaning of the term "floral meristem identity gene product" as defined herein.
A floral meristem identity gene product can be, for example, an API gene product having the amino acid sequence of SEQ ID NO: 2, which is a 256 amino acid gene product encoded by the Arabidopsis thaliana API cDNA. The Arabidopsis API cDNA encodes a highly conserved MADS domain, which can function as a DNA-binding domain, and a K domain, which has structural similarity to the coiled-coil domain of keratins and can be involved in protein-protein interactions.
As used herein, the term "APETALAl," "API" or "API gene product" means a floral meristem identity gene product that is characterized, in part, by having an amino acid sequence that has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 2 in the region from amino acid 1 to amino acid 163 or with the amino acid sequence of SEQ ID NO: 8 in the region from amino acid 1 to amino acid 163. Like other floral meristem identity gene products, API promotes conversion of shoot meristem to floral meristem in an angiosperm. An API gene product useful in the invention can be, for example, Arabidopsis API having the amino acid sequence of SEQ ID NO: 2; Brassica oleracea API having the amino acid sequence of SEQ ID NO: 4;
Brassica oleracea var. Jbotrytis API having the amino acid sequence of SEQ ID NO: 6 or Zea mays API having the amino acid sequence of SEQ ID NO: 8. In wild-type Arabidopsis, API RNA is expressed in flowers but is not detectable in roots, stems or leaves (Mandel et al . , Nature 360:273-277 (1992) , which is incorporated herein by reference) . The earliest detectable expression of API RNA is in young floral meristem at the time it initially forms on the flanks of shoot meristem. Expression of API increases as the floral meristem increases in size; no API expression is detectable in shoot meristem. In later stages of development, API expression ceases in cells that will give rise to reproductive organs of a flower (stamens and carpels) , but is maintained in cells that will give rise to non-reproductive organs (sepals and petals; Mandel, supra, 1992) . Thus, in nature, API expression is restricted to floral meristem and to certain regions of the flowers that develop from this meristemic tissue.
CAULIFLOWER (CAL) is another example of a floral meristem identity gene product. As used herein, the term "CAULIFLOWER," "CAL" or "CAL gene product" means a floral meristem identity gene product that is characterized, in part, by having an amino acid sequence that has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 10 in the region from amino acid 1 to amino acid 160 or with the amino acid sequence of SEQ ID NO: 12 in the region from amino acid 1 to amino acid 160.
A CAL gene product is exemplified by the Arabidopsis CAL gene product, which has the amino acid sequence of SEQ ID NO: 10, or the Brassi ca oleracea CAL gene product, which has the amino acid sequence of SEQ ID NO: 12. As disclosed herein, CAL, like API, contains a MADS domain and a K domain. The MADS domains of CAL and API differ in only five of 56 amino acid residues, where four of the five differences represent conservative amino acid replacements. Over the entire sequence, the Arabidopsis CAL and Arabidopsis API sequences (SEQ ID NOS: 10 and 2) are 76% identical and are 88% similar if conservative amino acid substitutions are allowed.
Similar to the expression pattern of API , CAL
RNA is expressed in young floral meristem in Arabidopsis . However, in contrast to API expression, which is high throughout sepal and petal development, CAL expression is low in these organs. Thus, in nature, CAL is expressed in floral meristem and, to a lesser extent, in the organs of developed flowers.
The skilled artisan will recognize that, due to the high sequence conservation between API and CAL, a novel ortholog can be categorized as both a CAL and an API, as defined herein. However, if desired, an API ortholog can be distinguished from a CAL ortholog by demonstrating a greater similarity to Arabidopsis API than to any other MADS box gene, such as CAL, as set forth in Purugganan et al . (Genetics 140:345-356 (1995) , which is incorporated herein by reference) . Furthermore, API can be distinguished from CAL by its ability to complement, or restore a wild-type phenotype, when introduced into a strong apl mutant. For example, introduction of Arabidopsis API (AGL7) complements the phenotype of the strong apl - 1 mutant; however, introduction of CAL (AGL10) into a cal -1 apl -1 mutant plant yields the apl -1 single mutant phenotype, demonstrating that CAL cannot complement the apl -1 mutation (see, for example, Mandel et al . , supra, 1992; Kempin et al . , supra, 1995) . Thus, API can be distinguished from CAL, if desired, by the ability of a nucleic acid molecule encoding API to complement a strong apl mutant such as apl -1 or apl -15.
LEAFY (LFY) is yet another example of a floral meristem identity gene product. As used herein, the term "LEAFY" or "LFY" or "LFY gene product" means a floral meristem identity gene product that is characterized, in part, by having an amino acid sequence that has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 16. In nature, LFY is expressed in floral meristem as well as during vegetative development. As disclosed herein, ectopic expression in shoot meristem of a floral meristem identity gene product, which normally is expressed in floral meristem, can convert shoot meristem to floral meristem in an angiosperm. Under appropriate conditions, ectopic expression in shoot meristem of a floral meristem identity gene product such as API, CAL, LFY, or a combination thereof, can promote early reproductive development.
Flower development in Arabidopsis is recognized in the art as a model for flower development in angiosperms in general . Gene orthologs corresponding to the Arabidopsis genes involved in the early steps of flower formation have been identified in distantly related angiosperm species, and these gene orthologs show remarkably similar patterns of RNA expression. Mutations in gene orthologs also result in phenotypes that correspond to the phenotype produced by a similar mutation in Arabidopsis . For example, orthologs of the Arabidopsis floral meristem identity genes API and LFY and the Arabidopsis organ identity genes AGAMOUS, APETALA3 and PISTILLATA have been isolated from monocots such as maize and, where characterized, reveal the anticipated RNA expression patterns and related mutant phenotypes (Schmidt et al . , Plant Cell 5:729-737 (1993) ; and Veit et al . , Plant Cell 5:1205-1215 (1993) , each of which is incorporated herein by reference) . Furthermore, a gene ortholog can be functionally interchangeable in that it can function across distantly related species boundaries (Mandel et al . , Cell 71:133-143 (1992) , which is incorporated herein by reference) . Taken together, these data suggest that the underlying mechanisms controlling the initiation and proper development of flowers are conserved across distantly related dicot and monocot boundaries.
Floral meristem identity genes in particular are conserved among distantly related angiosperm and gymnosperm species. For example, a gene ortholog of Arabidopsis API has been isolated from Antirrhinum ma jus (snapdragon; Huijser et al . , EMBO J. 11:1239-1249 (1992) , which is incorporated herein by reference) . As disclosed herein, an ortholog of Arabidopsis API also has been isolated from Brassica oleracea var. jbotrytis (cauliflower) and Zea Mays (maize; see Example VA) . Furthermore, API orthlogs also can be isolated from gymnosperms. Similarly, gene orthologs of Arabidopsis LFY have been isolated from angiosperms such as
Antirrhinum majus, tobacco and poplar tree and from gymnosperms such as Douglas fir (Coen et al . , Cell . 63:1311-1322 (1990) ; Kelly et al . , Plant Cell 7:225-234 (1995) ; and Rottmann et al. , Cell Biochem. Suppl . 17B: 23 (1993) ; Strauss et al . , Molec. Breed 1:5-26 (1995) , each of which is incorporated herein by reference) . The conservation of floral meristem identity gene products in non-flowering plants such as coniferous trees indicates that floral meristem identity genes can promote the reproductive development of gymnosperms as well as angiosperms .
The characterization of apl and lfy mutants also indicates that floral meristem identity gene products such as API and LFY function similarly in distantly related plant species. For example, a mutation in the Antirrhinum API ortholog results in a phenotype similar to the Arabidopsis apl indeterminate flower within a flower phenotype (Huijser et al . , supra , 1992) . In addition, a mutation in the Antirrhinum LFY ortholog results in a phenotype similar to the Arabidopsis lfy mutant phenotype (Coen et al . , supra , 1995)
A floral meristem identity gene product also can function across species boundaries. For example, introduction of a nucleic acid molecule encoding Arabidopsis LFY into a heterologous seed plant such as tobacco or aspen results in early reproductive development (Weigel and Nilsson, Nature 377:495-500 (1995) , which is incorporated herein by reference) . As disclosed herein, a nucleic acid molecule encoding an Arabidopsis API gene product (SEQ ID NO: 1) or an Arabidopsis CAL gene product (SEQ ID NO: 9) can be introduced into a heterologous seed plant such as corn, wheat, rice or pine and, upon ectopic expression, can promote early reproductive development in the transgenic seed plant. Furthermore, as disclosed herein, the conserved nature of the API , CAL and LFY coding sequences among diverse seed plant species allows a nucleic acid molecule encoding a floral meristem identity gene product isolated from essentially any seed plant to be introduced into essentially any other seed plant, wherein, upon appropriate expression of the introduced nucleic acid molecule in the seed plant, the floral meristem identity gene product promotes early reproductive development in the seed plant.
If desired, a novel API , CAL or LFY coding sequence can be isolated from a seed plant using a nucleotide sequence as a probe and methods well known in the art of molecular biology (Sambrook et al . (eds.) , Molecular Cloning: A Laboratory Manual (Second Edition) ,
Plainview, NY: Cold Spring Harbor Laboratory Press (1989) , which is incorporated herein by reference) . As exemplified herein and discussed in detail below (see Example VA) , an API ortholog from Zea Mays (maize; SEQ ID NO: 7) was isolated using the Arabidopsis API cDNA (SEQ ID NO: 1) as a probe.
In one embodiment, the invention provides a non-naturally occurring seed plant that contains a first ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene, and that is characterized by early reproductive development. As used herein, the term "characterized by early reproductive development," when used in reference to a non-naturally occurring seed plant of the invention, means a non-naturally occurring seed plant that forms reproductive structures earlier than the time when reproductive structures form on a corresponding naturally occurring seed plant that is grown under the same conditions and that does not ectopically express a floral meristem identity gene product. For example, the reproductive structure of an angiosperm is a flower, and the reproductive structure of a coniferous plant is a cone. For a particular naturally occurring seed plant, reproductive development occurs at a well-defined time that depends, in part, on genetic factors as well as on environmental conditions, such as day length and temperature. Thus, given a defined set of environmental condition and lacking ectopic expression of a floral meristem identity gene product, a naturally occurring seed plant will undergo reproductive development at a relatively fixed time. It is recognized that various transgenic plants that are characterized by early reproductive development have been described previously. Such transgenic plants, as discussed herein, are distinguishable from a non-naturally occurring seed plant of the invention or are explicitly excluded from the present invention. The product of a "late-flowering gene" can promote early reproductive development. However, a late flowering gene product is not a floral meristem identity gene product since it does not specify the conversion of shoot meristem to floral meristem in an angiosperm. Therefore, a transgenic plant expressing a late-flowering gene product is distinguishable from a non-naturally occurring seed plant of the invention. For example, a transgenic plant expressing the late-flowering gene, CONSTANS (CO) , flowers earlier than the corresponding wild type plant, but does not contain an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product (Putterill et al . , Cell 80:847-857 (1995)) . Thus, the early-flowering transgenic plant described by Putterill et al . is not a non-naturally occurring seed plant as defined herein.
Early reproductive development also has been observed in a transgenic tobacco plant expressing an exogenous rice MADS domain gene. Although the product of the rice MADS domain gene promotes early reproductive development, it does not specify the identity of floral meristem and, thus, cannot convert shoot meristem to floral meristem in an angiosperm (Chung et al . , Plant Mol. Biol. 26:657-665 (1994)) . Therefore, an early-flowering transgenic plant containing this rice MADS domain gene, like an early-flowering transgenic plant containing CONSTANS, is distinguishable from an early-flowering non-naturally occurring seed plant of the invention.
Mutations in a class of genes known as "early-flowering genes" also produce plants characterized by early reproductive development. Such early-flowering genes include, for example, EARLY FLOWERING 1 -3 (ELF1 , ELF2 , ELF3 ) ; EMBRYONIC FLOWER 1 , 2 (EMFl , EMF2) ; LONG
HYPOCOTYL 1 , 2 (HY1 , HY2 ) ; PHYTOCHROME B (PHYB) , SPINDLY (SPY) and TERMINAL FLOWER (TFL) (Weigel, supra , 1995) . The wild type product of an early-flowering gene retards reproductive development and is distinguishable from a floral meristem identity gene product in that an early-flowering gene product does not promote conversion of shoot meristem to floral meristem in an angiosperm. A plant that flowers early due to the loss of an early-flowering gene product function is distinct from a non-naturally occurring seed plant of the invention characterized by early reproductive development since such a plant does not contain an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product.
An Arabidopsis plant having a mutation in the
TERMINAL FLOWER (TFL) gene is characterized by early reproductive development and by the conversion of shoots to flowers (Alvarez et al . , Plant J. 2:103-116 (1992) , which is incorporated herein by reference) . However, TFL is not a floral meristem identity gene product, as defined herein. Specifically, it is the loss of TFL that promotes conversion of shoot meristem to floral meristem. Since the function of TFL is to antagonize formation of floral meristem, a tfl mutant, which lacks functional TFL, converts shoot meristem to floral meristem prematurely. Although TFL is not a floral meristem identity gene product and does not itself convert shoot meristem to floral meristem, the loss of TFL can result in a plant with an ectopically expressed floral meristem identity gene product. However, such a tfl mutant, in which a mutation in an endogenous TERMINAL FLOWER gene results in conversion of shoot meristem to floral meristem, is excluded explicitly from the present invention.
As used herein, the term "transgenic" refers to a seed plant that contains in its genome an exogenous nucleic acid molecule, which can be derived from the same or a different plant species. The exogenous nucleic acid molecule can be a gene regulatory element such as a promoter, enhancer or other regulatory element or can contain a coding sequence, which can be linked to a heterologous gene regulatory element .
As used herein, the term "seed plant" means an angiosperm or a gymnosperm. The term "angiosperm, " as used herein, means a seed-bearing plant whose seeds are borne in a mature ovary (fruit) . An angiosperm commonly is recognized as a flowering plant. The term "gymnosperm, " as used herein, means a seed-bearing plant with seeds not enclosed in an ovary.
Angiosperms are divided into two broad classes based on the number of cotyledons, which are seed leaves that generally store or absorb food. Thus, a monocotyledonous angiosperm is an angiosperm having a single cotyledon, and a dicotyledonous angiosperm is an angiosperm having two cotyledons. Angiosperms are well known and produce a variety of useful products including materials such as lumber, rubber, and paper; fibers such as cotton and linen; herbs and medicines such as quinine and vinblastine; ornamental flowers such as roses and orchids; and foodstuffs such as grains, oils, fruits and vegetables.
Angiosperms encompass a variety of flowering plants, including, for example, cereal plants, leguminous plants, oilseed plants, hardwood trees, fruit-bearing plants and ornamental flowers, which general classes are not necessarily exclusive. Such angiosperms include for example, a cereal plant, which produces an edible grain cereal. Such cereal plants include, for example, corn, rice, wheat, barley, oat, rye, orchardgrass, guinea grass, sorghum and turfgrass. In addition, a leguminous plant is an angiosperm that is a member of the pea family ( Fabaceae) and produces a characteristic fruit known as a legume. Examples of leguminous plants include, for example, soybean, pea, chickpea, moth bean, broad bean, kidney bean, lima bean, lentil, cowpea, dry bean, and peanut. Examples of legumes also include alfalfa, birdsfoot trefoil, clover and sainfoin. An oilseed plant also is an angiosperm with seeds that are useful as a source of oil. Examples of oilseed plants include soybean, sunflower, rapeseed and cottonseed.
An angiosperm also can be a hardwood tree, which is a perennial woody plant that generally has a single stem (trunk) . Examples of such trees include alder, ash, aspen, basswood (linden) , beech, birch, cherry, cottonwood, elm, eucalyptus, hickory, locust, maple, oak, persimmon, poplar, sycamore, walnut and willow. Trees are useful, for example, as a source of pulp, paper, structural material and fuel.
An angiosperm also can be a ruit-bearing plant, which produces a mature, ripened ovary (usually containing seeds) that is suitable for human or animal consumption. For example, hops are a member of the mulberry family prized for their flavoring in malt liquor. Fruit-bearing angiosperms also include grape, orange, lemon, grapefruit, avocado, date, peach, cherry, olive, plum, coconut, apple and pear trees and blackberry, blueberry, raspberry, strawberry, pineapple, tomato, cucumber and eggplant plants. An ornamental flower is an angiosperm cultivated for its decorative flower. Examples of commercially important ornamental flowers include rose, orchid, lily, tulip and chrysanthemum, snapdragon, camellia, carnation and petunia plants. The skilled artisan will recognize that the methods of the invention can be practiced using these or other angiosperms, as desired. Gymnosperms encompass four divisions? cycads, ginkgo, conifers and gnetophytes. The conifers are the most widespread of living gymnosperms and frequently are cultivated for structural wood or for pulp or paper. Conifers include redwood trees, pines, firs, spruces, hemlocks, Douglas firs, cypresses, junipers and yews. The skilled artisan will recognize that the methods of the invention can be practiced with these and other gymnosperms .
As used herein, the term "non-naturally occurring seed plant" means a seed plant containing a genome that has been modified by man. A transgenic seed plant, for example, is a non-naturally occurring seed plant that contains an exogenous nucleic acid molecule and, therefore, has a genome that has been modified by man. Furthermore, a seed plant that contains, for example, a mutation in an endogenous floral meristem identity gene regulatory element as a result of calculated exposure to a mutagenic agent also contains a genome that has been modified by man. In contrast, a seed plant containing a spontaneous or naturally occurring mutation is not a "non-naturally occurring seed plant" and, therefore, is not encompassed within the invention.
In various embodiments, the present invention provides a non-naturally occurring seed plant containing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene. If desired, a non-naturally occurring seed plant of the invention can contain a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product that is different from the first floral meristem identity gene product, provided that the first or second nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be expressed, as desired, either constitutively or inducibly. Such an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be an endogenous floral meristem identity gene that has, for example, a mutation in a gene regulatory element . An ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product also can be an endogenous nucleic acid molecule encoding a floral meristem identity gene product that is linked to an exogenous, heterologous gene regulatory element that confers ectopic expression. In addition, an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product can be an exogenous nucleic acid molecule that encodes a floral meristem identity gene product under control of a heterologous gene regulatory element .
A non-naturally occurring seed plant of the invention can contain an endogenous floral meristem identity gene having a modified gene regulatory element. The term "modified gene regulatory element," as used herein in reference to the regulatory element of a floral meristem identity gene, means a regulatory element having a mutation that results in ectopic expression of the linked endogenous floral meristem identity gene. Such a gene regulatory element can be, for example, a promoter or enhancer element and can be positioned 5' or 3 ' to the coding sequence or within an intronic sequence of the floral meristem identity gene. A modified gene regulatory element can have, for example, a nucleotide insertion, deletion or substitution that is produced, for example, by chemical mutagenesis using a mutagen such as ethylmethane sulfonate or by insertional mutagenesis using a transposable element. A modified gene regulatory element can be a functionally inactivated binding site for TFL or a functionally inactivated binding site for a gene product regulated by TFL, such that modification of the gene regulatory element results in ectopic expression of the linked floral meristem identity gene product, for example, in the shoot meristem of an angiosperm.
The present invention also provides a transgenic seed plant containing a first exogenous gene promoter that regulates a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product and a second exogenous gene promoter that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product . The present invention further provides a transgenic seed plant containing a first exogenous ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product and a second exogenous gene promoter that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
In addition, the invention provides a transgenic seed plant containing a first exogenous ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that the first second nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene, and further containing a second exogenous ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, where the first floral meristem identity gene product is different from the second floral meristem identity gene product .
As disclosed herein, ectopic expression of two different floral meristem identity gene products can be particularly useful. A transgenic Arabidopsis line constitutively expressing API under control of the cauliflower mosaic virus 35S promoter (see Example I) was crossed with a transgenic Arabidopsis line constitutively expressing LFY under control of the cauliflower mosaic virus 35S promoter (see Example III) , and the resulting progeny were analyzed. A fraction of the progeny flowered were characterized by enhanced early reproductive development as compared to the early reproductive development of 35S -API transgenic lines or 35S-LFY transgenic lines. PCR-based analyses demonstrated that all of the transgenic plants that were characterized by enhanced early reproductive development contained both the 35S-AP1 and 35S-LFY transgenes. These results indicate that ectopic expression of the combination of API and LFY in a seed plant can result in enhanced early reproductive development as compared to the early reproductive development obtained by ectopic expression of API or LFY alone. Thus, by using a combination of two different floral meristem identity gene products, plant breeding, for example, can be accelerated further as compared to the use of a single floral meristem identity gene product.
A useful combination of first and second floral meristem identity gene products can be, for example, API and LFY, CAL and LFY, or API and CAL. A particularly useful combination of first and second floral meristem identity gene products is the combination of API with LFY, as disclosed above, or the combination of CAL with LFY. Where a transgenic seed plant of the invention contains first and second exogenous nucleic acid molecules encoding different floral meristem identity gene products, it will be recognized that the order of introducing the first and second nucleic acid molecules into the seed plant is not important for purposes of the present invention. Thus, a transgenic seed plant of the invention having, for example, API as a first floral meristem identity gene product and LFY as a second floral meristem identity gene product is equivalent to a transgenic seed plant having LFY as a first floral meristem identity gene product and API as a second floral meristem identity gene product.
The invention also provides methods of converting shoot meristem to floral meristem in an angiosperm by ectopically expressing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product in the angiosperm. Thus, the invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing an exogenous, ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product into the angiosperm, thereby producing a transgenic angiosperm. A floral meristem identity gene product such as API, CAL or LFY, or a chimeric protein containing, in part, a floral meristem identity gene product, as disclosed below, is useful in converting shoot meristem to floral meristem according to the methods of the invention.
As used herein, the term "introducing, " when used in reference to a nucleic acid molecule and a seed plant such as an angiosperm or a gymnosperm, means transferring an exogenous nucleic acid molecule into the seed plant. For example, an exogenous nucleic acid molecule encoding a floral meristem identity gene product can be introduced into a seed plant by a variety of methods including AσroJbacterium-mediated transformation or direct gene transfer methods such as electroporation or microprojectile-mediated transformation.
Transformation methods based upon the soil bacterium Agrobacterium tumefaciens , known as "agro-infection, " are useful for introducing a nucleic acid molecule into a broad range of angiosperms and gymnosperms. The wild type form of Agrobacterium contains a Ti (tumor-inducing) plasmid that directs production of tumorigenic crown gall growth on host plants. Transfer of the tumor-inducing T-DNA region of the Ti plasmid to a plant genome requires the Ti plasmid-encoded virulence genes as well as T-DNA borders, which are a set of direct DNA repeats that delineate the region to be transferred. AgrroJbacterium-based vector is a modified form of a Ti plasmid, in which the tumor inducing functions are replaced by nucleic acid sequence of interest to be introduced into the plant host .
Current protocols for AgroJbacteriu -mediated transformation employ cointegrate vectors or, preferably, binary vector systems in which the components of the Ti plasmid are divided between a helper vector, which resides permanently in the Agrobacterium host and carries the virulence genes, and a shuttle vector, which contains the gene of interest bounded by T-DNA sequences. A variety of binary vectors are well known in the art and are commercially available from, for example, Clontech (Palo Alto, California) . Methods of coculturing Agrobac erium with cultured plant cells or wounded tissue such as leaf tissue, root explants, hypocotyledons, stem pieces or tubers, for example, also are well known in the art (Glick and Thompson (eds.) , Methods in Plant Molecular Biology and Biotechnology. Boca Raton, FL: CRC Press (1993), which is incorporated herein by reference) . Wounded cells within the plant tissue that have been infected by Agrobacterium can develop organs de novo when cultured under the appropriate conditions; the resulting transgenic shoots eventually give rise to transgenic plants containing the exogenous nucleic acid molecule of interest, as described in Example I.
AσroJbacterium-mediated transformation has been used to produce a variety of transgenic seed plants (see, for example, Wang et al . (eds) , Transformation of Plants and Soil Microorganisms. Cambridge, UK: University Press (1995) , which is incorporated herein by reference) . For example, Agrro acterium-mediated transformation can be used to produce transgenic crudiferous plants such as Arabidopsis, mustard, rapeseed and flax; transgenic leguminous plants such as alfalfa, pea, soybean, trefoil and white clover; and transgenic solanaceous plants such as eggplant, petunia, potato, tobacco and tomato. In addition, Agro acterium-mediated transformation can be used to introduce exogenous nucleic acids into apple, aspen, belladonna, black currant, carrot, celery, cotton, cucumber, grape, horseradish, lettuce, morning glory, muskmelon, neem, poplar, strawberry, sugar beet, sunflower, walnut and asparagus plants (see, for example, Glick and Thompson, supra, 1993) . Microprojectile-mediated transformation also is a well known method of introducing an exogenous nucleic acid molecule into a variety of seed plant species. This method, first described by Klein et al . , Nature 327:70-73 (1987) , which is incorporated herein by reference, relies on microprojectiles such as gold or tungsten that are coated with the desired nucleic acid molecule by precipitation with calcium chloride, spermidine or PEG. The microprojectile particles are accelerated at high speed into seed plant tissue using a device such as the Biolistic™ PD-1000 (Biorad, Hercules, California) .
Microprojectile-mediated delivery or "particle bombardment" is especially useful to transform seed plants that are difficult to transform or regenerate using other methods. Microprojectile-mediated transformation has been used, for example, to generate a variety of transgenic seed plant species, including cotton, tobacco, corn, hybrid poplar and papaya (see, for example, Glick and Thompson, supra , 1993) . The transformation of important cereal crops such as wheat, oat, barley, sorghum and rice also has been achieved using microprojectile-mediated delivery (Duan et al . , Nature Biotech. 14:494-498 (1996) ; Shimamoto, Curr. Opin. Biotech. 5:158-162 (1994) , each of which is incorporated herein by reference) . A rapid transformation regeneration system for the production of transgenic plants, such as transgenic wheat, in two to three months also can be useful in producing a transgenic seed plant of the invention (European Patent No. EP 0 709 462 A2, Application number 95870117.9, filed 25 October 1995, which is incorporated herein by reference) .
Thus, a variety of methods for introducing a nucleic acid molecule into a seed plant are well known in the art. Important crop species such as rice, for example, have been transformed using microprojectile delivery, Agrobacterium-mediated transformation or protoplast transformation (Hiei et al . , The Plant J. 6(2) :271-282 (1994) ; Shimamoto, Science 270:1772-1773 (1995) , each of which is incorporated herein by reference) . Fertile transgenic maize has been obtained, for example, by microparticle bombardment (see Wang et al . , supra , 1995) . As discussed above, barley, wheat, oat and other small-grain cereal crops also have been transformed, for example, using microparticle bombardment (see Wang et al . , supra, 1995) .
Methods of transforming forest trees including both angiosperms and gymnosperms also are well known in the art . Transgenic angiosperms such as members of the genus Populus , which includes aspens and poplars, have been generated using Agrobacterium-mediated transformation, for example. In addition, transgenic Populus and sweetgum, which are of interest for biomass production for fuel, also have been produced. Transgenic gymnosperms, including conifers such as white spruce and larch, also have been obtained, for example, using microprojectile bombardment (Wang et al . , supra , 1995) . The skilled artisan will recognize that Agrobacterium-mediated or microprojectile-mediated transformation, as disclosed herein, or other methods known in the art can be used to introduce a nucleic acid molecule encoding a floral meristem identity gene product into a seed plant according to the methods of the invention.
The term "converting shoot meristem to floral meristem, " as used herein, means promoting the formation of flower progenitor tissue where shoot progenitor tissue otherwise would be formed in the angiosperm. As a result of the conversion of shoot meristem to floral meristem, flowers form in an angiosperm where shoots normally would form. The conversion of shoot meristem to floral meristem can be identified using well known methods, such as scanning electron microscopy, light microscopy or visual inspection (see, for example, Mandel and Yanofsky, Plant Cell 7:1763-1771 (1995) , which is incorporated herein by reference or Weigel and Nilsson, supra , 1995) .
Provided herein are methods of converting shoot meristem to floral meristem in an angiosperm by introducing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product and a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product into the angiosperm, where the first floral meristem identity gene product is different from the second floral meristem identity gene product. As discussed above, first and second floral meristem identity gene products useful in converting shoot 39 meristem to floral meristem in an angiosperm can be, for example, API and LFY, CAL and LFY, or API and CAL.
Also provided herein are methods of promoting early reproductive development in a seed plant by ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product in the seed plant, provided that the first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene. For example, the invention provides a method of promoting early reproductive development in a seed plant by introducing an ectopically expressible nucleic acid molecule encoding a floral meristem identity gene product into the seed plant, thus producing a transgenic seed plant. A floral meristem identity gene product such as API, CAL or LFY, or a chimeric protein containing, in part, a floral meristem identity gene product, as disclosed below, is useful in methods of promoting early reproductive development .
The term "promoting early reproductive development," as used herein in reference to a seed plant, means promoting the formation of a reproductive structure earlier than the time when a reproductive structure would form on a corresponding seed plant that is grown under the same conditions and that does not ectopically express a floral meristem identity gene product. As discussed above, the time when reproductive structures form on a particular seed plant that does not ectopically express a floral meristem identity gene product is relatively fixed and depends, in part, on genetic factors as well as environmental conditions, such as day length and temperature. Thus, given a defined set of environmental conditions, a naturally occurring angiosperm, for example, will flower at a relatively fixed time. Similarly, given a defined set of environmental conditions, a naturally occurring coniferous gymnosperm, for example, will produce cones at a relatively fixed time.
As disclosed herein, ectopic expression of a nucleic acid molecule encoding a floral meristem identity gene product in an angiosperm converts shoot meristem to floral meristem in the angiosperm. Furthermore, ectopic expression of a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY in an angiosperm prior to the time when endogenous floral meristem identity gene products are expressed in the angiosperm can convert shoot meristem to floral meristem precociously, resulting in early reproductive development in the angiosperm, as indicated by early flowering. In the same manner, ectopic expression of a nucleic acid molecule encoding API, CAL, or LFY, for example, in a gymnosperm prior to the time when endogenous floral meristem identity gene products are expressed in the gymnosperm results in early reproductive development in the gymnosperm.
For a given seed plant species and particular set of growth conditions, constitutive expression of a floral meristem identity gene product results in a relatively invariant time of early reproductive development, which is the earliest time when all factors necessary for reproductive development are active. For example, as shown in Example ID, constitutive expression of API in transgenic Arabidopsis plants grown under
"long-day" light conditions results in early reproductive development at day 10 as compared to the normal time of reproductive development, which is day 18 in non-transgenic Arabidopsis plants grown under the same conditions. Thus, under these conditions, day 10 is the relatively invariant time of early reproductive development for Arabidopsis transgenics that constitutively express a floral meristem identity gene product .
However, in addition to methods of constitutively expressing a floral meristem identity gene product, the present invention provides methods of selecting the time of early reproductive development. As disclosed herein, floral meristem gene product expression or activity can be regulated in response to an inducing agent or cognate ligand, for example, such that the time of early reproductive development can be selected. For example, in Arabidopsis transgenics grown under the conditions described above, the time of early reproductive development need not necessarily be the relatively invariant day 10 at which early reproductive development occurs as a consequence of constitutive floral meristem identity gene product expression. If floral meristem identity gene product expression is rendered dependent upon the presence of an inducing agent, early reproductive development can be selected to occur, for example, on day 14, by contacting the seed plant with an inducing agent on or slightly before day 14.
Thus, the present invention provides recombinant nucleic acid molecules, transgenic seed plant containing such recombinant nucleic acid molecules and methods for selecting the time of early reproductive development. These methods allow a farmer or horticulturist, for example, to determine the time of early reproductive development. The methods of the invention can be useful, for example, in allowing a grower to respond to an approaching storm or impending snap-freeze by selecting the time of early reproductive development such that the crop can be harvested before being harmed by the adverse weather conditions. The methods of the invention for selecting the time of early reproductive development also can be useful to spread out the time period over which transgenic seed plants are ready to be harvested. For example, the methods of the invention can be used to increase floral meristem identity gene product expression in different crop fields at different times, resulting in a staggered time of harvest for the different fields.
Thus, the present invention provides a recombinant nucleic acid molecule containing an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product. The floral meristem identity gene product encoded within a recombinant nucleic acid molecule of the invention can be, for example, API or CAL. In addition, the floral meristem identity gene product encoded within a recombinant nucleic acid molecule of the invention can be LFY. As disclosed herein, a recombinant nucleic acid molecule of the invention can contain an inducible regulatory element such as a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element.
The invention also provides a transgenic seed plant containing a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product . Such a transgenic seed plant can be an angiosperm or gymnosperm and can contain, for example, a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding API or CAL. A transgenic seed plant of the invention can contain, for example, a recombinant nucleic acid molecule comprising a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding API. In addition, a transgenic seed plant of the invention can contain a recombinant nucleic acid molecule comprising a copper inducible element tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding CAL. A transgenic seed plant of the invention also can contain a recombinant nucleic acid molecule comprising a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element operably linked to a nucleic acid molecule encoding LFY.
The term "recombinant nucleic acid molecule, " as used herein, means a non-naturally occurring nucleic acid molecule that has been manipulated in vi tro such that it is genetically distinguishable from a naturally occurring nucleic acid molecule. A recombinant nucleic acid molecule of the invention comprises two nucleic acid molecules that have been manipulated in vi tro such that the two nucleic acid molecules are operably linked.
As used herein, the term "inducible regulatory element" means a nucleic acid molecule that confers conditional expression upon an operably linked nucleic acid molecule, where expression of the operably linked nucleic acid molecule is increased in the presence of a particular inducing agent as compared to expression of the nucleic acid molecule in the absence of the inducing agent. In a method of the invention, a useful inducible regulatory element has the following characteristics: confers low level expression upon an operably linked nucleic acid molecule in the absence of an inducing agent; confers high level expression upon an operably linked nucleic acid molecule in the presence of an appropriate inducing agent; and utilizes an inducing agent that does not interfere substantially with the normal physiology of a transgenic seed plant treated with the inducing agent. It is recognized, for example, that, subsequent to introduction into a seed plant, a particularly useful inducible regulatory element is one that confers an extremely low level of expression upon an operably linked nucleic acid molecule in the absence of inducing agent . Such an inducible regulatory element is considered to be tightly regulated.
The term "operably linked, " as used in reference to a regulatory element, such as a promoter or inducible regulatory element, and a nucleic acid molecule encoding a floral meristem identity gene product, means that the regulatory element confers regulated expression upon the operably linked nucleic acid molecule encoding the floral meristem identity gene product. Thus, the term operably linked, as used herein in reference to an inducible regulatory element and a nucleic acid molecule encoding a floral meristem identity gene product, means that the inducible regulatory element is linked to the nucleic acid molecule encoding a floral meristem identity gene product such that the inducible regulatory element increases expression of the floral meristem identity gene product in the presence of the appropriate inducing agent. It is recognized that two nucleic acid molecules that are operably linked contain, at a minimum, all elements essential for transcription, including, for example, a TATA box. One skilled in the art knows, for example, that an inducible regulatory element that lacks minimal promoter elements can be combined with a nucleic acid molecule having minimal promoter elements and a nucleic acid molecule encoding a floral meristem identity gene product such that expression of the floral meristem identity gene product can be increased in the presence of the appropriate inducing agent .
A particularly useful inducible regulatory element can be, for example, a copper-inducible promoter (Mett et al., Proc. Natl. Acad. Sci. USA 90:4567-4571 (1993) , which is incorporated herein by reference) ; tetracycline-inducible regulatory element (Gatz et al. , Plant J. 2:397-404 (1992) ; Rόder et al . , Mol. Gen. Genet. 243:32-38 (1994) , each of which is incorporated herein by reference) ; ecdysone inducible element (Christopherson et al., Proc. Natl. Acad. Sci. USA 89:6314-6318 (1992) , which is incorporated herein by reference) ; or heat shock inducible element (Takahashi et al . , Plant Physiol . 99:383-390 (1992) , which is incorporated herein by reference) . Another useful inducible regulatory element can be a lac operon element, which is used in combination with a constitutively expressed lac repressor to confer, for example, IPTG-inducible expression, as described by Wilde et al . , (EMBO J. 11:1251-1259 (1992) , which is incorporated herein by reference) .
An inducible regulatory element useful in a method of the invention also can be, for example, a nitrate-inducible promoter derived from the spinach nitrite reductase gene (Back et al . , Plant Mol .
Biol . 17:9 (1991) , which is incorporated herein by reference) or a light-inducible promoter, such as that associated with the small subunit of RuBP carboxylase or the LHCP gene families (Feinbaum et al . , Mol. Gen. Genet. 226:449 (1991) ; Lam and Chua, Science 248:471 (1990) , each of which is incorporated herein by reference) . An inducible regulatory element useful in constructing a transgenic seed plant also can be a salicylic acid inducible element (Uknes et al . , Plant Cell 5:159-169 (1993) ; Bi et al . , Plant J. 8:235-245 (1995) , each of which is incorporated herein by reference) or a plant hormone-inducible element (Yamaguchi-Shinozaki et al . , Plant Mol. Biol. 15:905 (1990) ; Kares et al . , Plant Mol. Biol . 15:225 (1990) , each of which is incorporated herein by reference) . A human glucocorticoid response element also is an inducible regulatory element that can confer hormone-dependent gene expression in seed plants (Schena et al., Proc. Natl. Acad. Sci. USA 88:10421 (1991) , which is incorporated herein by reference) .
An inducible regulatory element that is particularly useful for increasing expression of a floral meristem identity gene product in a transgenic seed plant of the invention is a copper inducible regulatory element (see, for example, Mett et al . , supra , 1993) . Thus, the invention provides a recombinant nucleic acid molecule comprising a copper inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product and a transgenic seed plant containing such a recombinant nucleic acid molecule. Copper, which is a natural part of the nutrient environment of a seed plant, can be used to increase expression of a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a copper inducible regulatory element. For example, an ACE1 binding site in conjunction with constitutively expressed yeast ACE1 protein confers copper inducible expression upon an operably linked nucleic acid molecule. The ACE1 protein, a metalloresponsive transcription factor, is activated by copper or silver ions, resulting in increased expression of a nucleic acid molecule operably linked to an ACE1 element.
Such a copper inducible regulatory element can be an ACE1 binding site from the etallothionein gene promoter (SEQ ID NO: 21; Furst et al . , Cell 55:705-717
(1988) , which is incorporated herein by reference) . For example, the ACE1 binding site can be combined with the 90 base-pair domain A of the cauliflower mosaic virus 35S promoter and operably linked to a nucleic acid molecule encoding API, CAL or LFY to produce a recombinant nucleic acid molecule of the invention. In a transgenic seed plant constitutively expressing ACE1 under control of such a modified CaMV 35S promoter, for example, copper inducible expression is conferred upon an operably linked nucleic acid molecule encoding a floral meristem identity gene product .
The expression of a nucleic acid encoding a floral meristem identity gene product operably linked to a copper inducible regulatory element, such as 5 ' -AGCTTAGCGATGCGTCTTTTCCGCTGAACCGTTCCAGCAAAAAAGACTAG-3 ' (SEQ ID NO: 21) , can be increased in a transgenic seed plant grown under copper ion-depleted conditions, for example, and contacted with 50 μM copper sulfate in a nutrient solution or with 0.5 μM copper sulfate applied by foliar spraying of the transgenic seed plant (see, for example, Mett et al . , supra, 1993) . A single application of 0.5 μM copper sulfate can be sufficient to sustain increased floral meristem identity gene product expression over a period of several days. If desired, a transgenic seed plant of the invention also can be contacted with multiple applications of an inducing agent such as copper sulfate.
An inducible regulatory element also can confer tetracycline-dependent floral meristem identity gene expression in a transgenic seed plant of the invention. Thus, the present invention provides a recombinant nucleic acid molecule comprising a tetracycline inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product as well as a transgenic seed plant into which such a recombinant nucleic acid molecule has been introduced. A tetracycline inducible regulatory element is particularly useful for conferring tightly regulated gene expression as indicated by the observation that a phenotype that results from even low amounts of a gene product expression is suppressed from such an inducible system in the absence of inducing agent (see, for example, Rόder et al . , supra , 1994) .
A transgenic seed plant constitutively expressing TnlO-encoded Tet repressor (TetR) , for example, can be contacted with tetracycline to increase expression of a nucleic acid molecule encoding a floral meristem identity gene product operably linked to the cauliflower mosaic virus promoter containing several tet operator sequences (5 ' -ACTCTATCAGTGATAGAGT-3 ' ; SEQ ID NO: 22) positioned close to the TATA box (see, for example, Gatz, Meth. Cell Biol. 50:411-424 (1995) , which is incorporated herein by reference; Gatz et al . , supra ,
1992) . Such a tetracycline-inducible system can increase expression of an operably linked nucleic acid molecule as much as 200 to 500-fold in a transgenic angiosperm or gymnosperm of the invention.
A high level of Tet repressor expression (about
1 x 106 molecules per cell) is critical for tight regulation. Thus, a seed plant preferably is transformed first with a plasmid encoding the Tet repressor, and screened for high level expression. For example, plasmid pBinTet (Gatz, supra, 1995) contains the Tet repressor coding region, which is expressed under control of the CaMV 35S promoter, and the neo ycin phosphotransferase gene for selection of transformants. To screen transformants for a high level of Tet repressor expression, a plasmid containing a reporter gene under control of a promoter with tet operators, such as pTX-Gus-int (Gatz, supra , 1995) , can be transiently introduced into a seed plant cell and assayed for activity in the presence and absence of tetracycline. High β-glucouronidase (GUS) expression that is dependent on the presence of tetracycline is indicative of high Tet repressor expression.
A particularly useful tetracycline inducible regulatory element is present in plasmid pBIN-HygTX, which has a CaMV 35S promoter, into which three tet operator sites have been inserted, and an octopine synthase polyadenylation site (Gatz, supra, 1995) . A multiple cloning site between the promoter and polyadenylation signal in pBIN-HygTX allows for convenient insertion of a nucleic acid molecule encoding the desired floral meristem identity gene product, and the hygromycin phosphotransferase gene allows for selection of transformants containing the construct. In a preferred embodiment of the invention, previously selected Tet repressor positive cells are transformed with a plasmid such as pBIN-HygTX, into which a nucleic acid molecule encoding a floral meristem identity gene product has been inserted.
To increase floral meristem identity gene product expression using a tetracycline-inducible regulatory element, a transgenic seed plant of the invention can be contacted with tetracycline or, preferably, with chlor-tetracycline (SIGMA) , which is a more efficient inducer than tetracycline. In addition, a useful inducing agent can be a tetracycline analog that binds the Tet repressor to function as an inducer but that does not act as an antibiotic (Gatz, supra , 1995) . A transgenic seed plant of the invention can be contacted, for example, by watering with about 1 mg/liter chlor-tetracycline or tetracycline. Similarly, a plant grown in hydroponic culture can be contacted with a solution containing about 1 mg/liter chlor-tetracycline or tetracycline (Gatz, supra, 1995) . If desired, a transgenic angiosperm or gymnosperm can be contacted repeatedly with chlor-tetracycline or tetracycline every other day for about 10 days (Rδder et al . , supra, 1994) . Floral meristem identity gene product expression is increased efficiently at a tetracycline concentration that does not inhibit the growth of bacteria, indicating that the use of tetracycline as an inducing agent will not present environmental concerns.
An ecdysone inducible regulatory element also can be useful in practicing the methods of the invention. For example, an ecdysone inducible regulatory element can contain four copies of an ecdysone response element having the sequence 5 ' -GATCCGACAAGGGTTCAATGCACTTGTCA-3 ' (EcRE; SEQ ID NO: 23) as described in Christopherson et al . , supra , 1992. In a transgenic seed plant into which a nucleic acid encoding an ecdysone receptor has been introduced, an ecdysone inducible regulatory element can confer ecdysone-dependent expression on a nucleic acid molecule encoding a floral meristem identity gene product . An appropriate inducing agent for increasing expression of a nucleic acid molecule operably linked to an ecdysone inducible regulatory element can be, for example, α-ecdysone, 20-hydroxyecdysone, polypodine B, ponasterone A, muristerone A or RH-5992, which is an ecdysone agonist that mimics 20-hydroxyecdysone (see, for example, Kreutzweiser et al . , Ecotoxicol . Environ. Safety 28:14-24 (1994) , which is incorporated herein by reference and Christopherson et al . , supra , 1992) . Methods for determining an appropriate inducing agent for use with an ecdysone inducible regulatory element are well known in the art. As disclosed herein, compound RH-5992 can be a particularly useful inducing agent for increasing floral meristem gene product expression in a transgenic seed plant containing an ecdysone inducible regulatory element.
An inducible regulatory element also can be derived from the promoter of a heat shock gene, such as HSP81 -1 (SEQ ID NO: 24; Takahashi, supra, 1992) . Thus, the invention also provides a recombinant nucleic acid molecule comprising a heat shock inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product and a transgenic seed plant containing such a recombinant nucleic acid molecule. The HSP81 -1 promoter (SEQ ID NO: 24) confers low level expression upon an operably linked nucleic acid molecule in parts of roots under unstressed conditions and confers high level expression in most Arabidopsis tissues following heat shock (see, for example, Yabe et al . , Plant Cell Physiol. 35:1207-1219 (1994), which is incorporated herein by reference) . After growth of Arabidopsis at 23°C, a single heat shock treatment at 37°C for two hours is sufficient to induce expression of a nucleic acid molecule operably linked to the HSP81 -1 gene regulatory element (see Ueda et al . , Mol. Gen. Genet. 250:533-539 (1996) , which is incorporated herein by reference) .
The use of a heat shock inducible regulatory element is particularly useful for a transgenic seed plant of the invention grown in an enclosed environment such as a green house, where temperature can be readily manipulated. The use of a heat shock inducible regulatory element especially is applicable to a transplantable or potted transgenic seed plant of the invention, which can be moved conveniently from an environment having a low temperature to an environment having a high temperature . A transgenic angiosperm or gymnosperm of the invention containing a recombinant nucleic acid molecule comprising a HSP81 - 1 heat shock regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product also can be induced, for example, by altering the ambient temperature, watering with heated water or submersing the transgenic seed plant in a sealed plastic bag into a heated water bath (see, for example, Ueda et al . , supra , 1996) .
A recombinant nucleic acid molecule of the invention comprising an inducible gene regulatory element can be expressed variably in different lines of transgenic seed plants. In some transgenic lines, for example, leaky expression of the introduced recombinant nucleic acid molecule can occur in the absence of the appropriate inducing agent due to phenomena such as position effects (see, for example, Ueda et al . , supra, 1996) . Thus, a transgenic seed plant containing a recombinant nucleic acid molecule comprising an inducible gene regulatory element operably linked to a nucleic acid encoding a floral meristem identity gene product can be screened, if desired, to obtain a particular transgenic seed plant in which expression of the operably linked nucleic acid molecule is desirably low in the absence of the appropriate inducing agent .
The present invention also provides a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product to produce a transgenic angiosperm, and contacting the transgenic angiosperm with an inducing agent, thereby increasing expression of the floral meristem identity gene product and converting shoot meristem to floral meristem in the transgenic angiosperm. In such a method of the invention, the inducible regulatory element can be, for example, a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element, and the floral meristem identity gene product can be, for example, API, CAL or LFY.
In addition, the invention provides a method of promoting early reproductive development in a seed plant such as an angiosperm or gymnosperm by introducing into the seed plant a recombinant nucleic acid molecule comprising an inducible regulatory element operably linked to a nucleic acid molecule encoding a floral meristem identity gene product to produce a transgenic seed plant, and contacting the transgenic seed plant with an inducing agent, thereby increasing expression of the floral meristem identity gene product and promoting early reproductive development in the transgenic seed plant. 56
In a method of the invention for promoting early reproductive development in a seed plant, the inducible regulatory element can be, for example, a copper inducible element, tetracycline inducible element, ecdysone inducible element or heat shock inducible element, and the floral meristem identity gene product can be, for example, API, CAL or LFY.
The term "inducing agent," as used herein, means a substance or condition that effects increased expression of a nucleic acid molecule operably linked to a particular inducible regulatory element as compared to the level of expression of the nucleic acid molecule in the absence of the inducing agent . An inducing agent can be, for example, a naturally occurring or synthetic chemical or biological molecule such as a simple or complex organic molecule, a peptide, a protein or an oligonucleotide that increases expression of a nucleic acid molecule operably linked to a particular inducible regulatory element . An example of such an inducing agent is a compound such as copper sulfate, tetracycline or an ecdysone. An inducing agent also can be a condition such as heat of a certain temperature or light of a certain wavelength. When used in reference to a particular inducible regulatory element, an "appropriate" inducing agent means an inducing agent that results in increased expression of a nucleic acid molecule operably linked to the particular inducible regulatory element.
An inducing agent of the invention can be used alone or in solution or can be used in conjunction with an acceptable carrier that can serve to stabilize the inducing agent or to promote absorption of the inducing agent by a seed plant. If desired, a transgenic seed plant of the invention can be contacted with an inducing agent in combination with an unrelated substance such as a plant nutrient, pesticide or insecticide.
One skilled in the art can readily determine the optimum concentration of an inducing agent needed to produce increased expression of a nucleic acid molecule operably linked to an inducible regulatory element in a transgenic seed plant of the invention. For conveniently determining the optimum concentration of inducing agent from a range of useful concentrations, one skilled in the art can operably link the particular inducible regulatory element to a nucleic acid molecule encoding a reporter gene product such as β-glucouronidase (GUS) and assay for reporter gene product activity in the presence of various concentrations of inducing agent (see, for example, Jefferson et al . , EMBO J. 6:3901-3907 (1987) , which is incorporated herein by reference) .
As used herein, the term "contacting, " in reference to a transgenic seed plant of the invention, means exposing the transgenic seed plant to an inducing agent, or to a cognate ligand as disclosed below, such that the agent can induce expression of a nucleic acid molecule operably linked to the particular inducible regulatory element . A transgenic seed plant such as an angiosperm or gymnosperm, which contains a recombinant nucleic acid molecule of the invention, can be contacted with an inducing agent in a variety of manners. Expression of a floral meristem identity gene product can be increased conveniently, for example, by spraying a transgenic seed plant with an aqueous solution containing an appropriate inducing agent or by adding an appropriate inducing agent to the water supply of a transgenic seed plant grown using irrigation or to the water supply of a transgenic seed plant grown hydroponically. A transgenic seed plant containing a recombinant nucleic acid molecule of the invention also can be contacted by spraying the seed plant with an inducing agent in aerosol form. In addition, a transgenic seed plant can be contacted with an appropriate inducing agent by adding the agent to the soil or other solid nutrient media in which the seed plant is grown, whereby the inducing agent is absorbed into the seed plant. Other modes of contacting a transgenic seed plant with an inducing agent, such as injecting or immersing the seed plant in a solution containing an inducing agent, are well known in the art. For an inducing agent that is temperature or light, for example, contacting can be effected by altering the temperature or light to which the transgenic seed plant is exposed, or, if desired, by moving the transgenic seed plant from an environment of one temperature or light source to an environment having the appropriate inducing temperature or light source.
If desired, a transgenic seed plant of the invention can be contacted individually with an inducing agent. Furthermore, a group of transgenic seed plants that, for example, are located together in a garden plot, hot house or field, can be contacted en masse with an inducing agent, such that floral meristem identity gene product expression is increased coordinately in all transgenic seed plants of the group.
A transgenic seed plant of the invention can be contacted with an inducing agent using one of several means. For example, a transgenic seed plant can be contacted with an inducing agent by non-automated means such as with a hand held spraying apparatus. Such manual means can be useful when the methods of the invention are applied to particularly delicate or valuable seed plant varieties or when it is desirable, for example, to promote early reproductive development in a particular transgenic seed plant without promoting early reproductive development in a neighboring transgenic seed plant. Furthermore, a transgenic seed plant of the invention can be contacted with an inducing agent by mechanical means such as with a conventional yard "sprinkler" for a transgenic seed plant grown, for example, in a garden; a mechanical spraying system in a green house; traditional farm machinery for spraying field crops; or "crop dusting" for conveniently contacting an entire field of transgenic seed plants with a particulate or gaseous inducing agent. The skilled practitioner, whether home gardener or commercial farmer, recognizes that these and other manual or mechanical means can be used to contact a transgenic seed plant with an inducing agent according to the methods of the invention. Furthermore, it is recognized that a transgenic seed plant of the invention can be contacted with a single treatment of an inducing agent or, if desired, can be contacted with multiple applications of the inducing agent. In a preferred embodiment of the invention, a transgenic seed plant of the invention is contacted once with an inducing agent to effectively increase floral meristem identity gene product expression, thereby promoting early reproductive development in the transgenic seed plant. Similarly, a transgenic angiosperm of the invention preferably is contacted once with an inducing agent to effectively increase floral meristem identity gene product expression and convert shoot meristem to floral meristem in the transgenic angiosperm.
A single application of an inducing agent is preferable when a transient increase in floral meristem identity gene product expression from a recombinant nucleic acid molecule of the invention promotes irreversible early reproductive development in a seed plant. In many seed plant species, early reproductive development is irreversible. Transient expression of a floral meristem identity gene product from an introduced recombinant nucleic acid molecule, for example, results in sustained ectopic expression of endogenous floral meristem identity gene products, resulting in irreversible early reproductive development. For example, ectopic expression of API in a transgenic plant induces endogenous LFY gene expression, and ectopic expression of LFY induces endogenous API gene expression (Mandel and Yanofsky, Nature 377:522-524 (1995) , which is incorporated herein by reference; Weigel and Nilsson, supra, 1995) . Genetic studies also indicate that CAL can act directly or indirectly to increase expression of API and LFY. Thus, ectopic expression of CAL from an exogenous nucleic acid molecule, for example, can induce endogenous API and LFY expression (see Bowman et al . , supra , 1993) . Enhanced expression of endogenous API, LFY or CAL following a transient increase in expression of an introduced floral meristem identity gene product induced by a single application of an inducing agent can make repeated applications of an inducing agent unnecessary.
In some seed plants, however, such as angiosperms characterized by the phenomenon of floral reversion, repeated applications of the inducing agent can be desirable. In species such as impatiens, an initiated flower can revert into a shoot such that the center of the developing flower behaves as an indeterminate shoot (see, for example, Battey and Lyndon, Ann. Bot . 61:9-16 (1988) , which is incorporated by reference herein) . Thus, to prevent floral reversion in species such as impatiens, repeated applications of an inducing agent can be useful. Repeated applications of an inducing agent, as well as single applications, are encompassed within the scope of the present invention.
The invention further provides a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY linked in frame to a nucleic acid molecule encoding a ligand binding domain. Expression of a chimeric protein of the invention in a seed plant is useful because the ligand binding domain renders the activity of a linked gene product dependent on the presence of cognate ligand. Specifically, in a chimeric protein of the invention, floral meristem gene product activity is increased in the presence of cognate ligand, as compared to activity in the absence of cognate ligand.
A nucleic acid molecule encoding a chimeric protein of the invention comprises a nucleic acid molecule encoding a floral meristem identity gene product, such as a nucleic acid molecule having the nucleic acid sequence SEQ ID NO: 1, SEQ ID NO: 9 or SEQ ID NO: 15, which encodes API, CAL or LFY, respectively, any of which is linked in frame to a nucleic acid molecule encoding a ligand binding domain. The expression of such a nucleic acid molecule results in the production of a chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain. Thus, the invention also provides a chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain and an antibody that specifically binds such a chimeric protein.
The invention further provides a transgenic seed plant, such as angiosperm or gymnosperm, that contains a nucleic acid molecule encoding a chimeric protein of the invention. The invention provides, for example, a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a ligand binding domain. A particularly useful transgenic seed plant contains a nucleic acid molecule encoding API linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain. The invention also provides a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding CAL linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain. In addition, there is provided a transgenic seed plant containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding LFY linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain or a glucocorticoid receptor ligand binding domain.
Any floral meristem identity gene product, as defined herein, is useful in a chimeric protein of the invention. Thus, a nucleic acid molecule encoding Arabidopsis thaliana API (SEQ ID NO: 2) , Brassica oleracea API (SEQ ID NO: 4) , Brassica oleracea var. Botrytis API (SEQ ID NO: 8) or Zea mays API (SEQ ID NO: 10) , each of which have activity in converting shoot meristem to floral meristem, can be used to construct a nucleic acid molecule encoding a chimeric protein of the invention. Similarly, a nucleic acid molecule encoding, for example, Arabidopsis thaliana CAL (SEQ ID NO: 10) , Brassica oleracea CAL (SEQ ID NO: 12) , or a nucleic acid molecule encoding Arabidopsis thaliana LFY (SEQ ID NO: 16) is useful when linked in frame to a nucleic acid molecule encoding a ligand binding domain to produce a nucleic acid molecule encoding a ligand-dependent chimeric protein of the invention.
A ligand binding domain useful in a chimeric protein of the invention is a domain that, when fused in frame to a heterologous gene product, renders the activity of the fused gene product dependent on cognate ligand such that the activity of the fused gene product is increased in the presence of cognate ligand as compared to its activity in the absence of ligand. Such a ligand binding domain can be a steroid binding domain such as the ligand binding domain of an ecdysone receptor, glucocorticoid receptor, estrogen receptor, progesterone receptor, androgen receptor, thyroid receptor, vitamin D receptor or retinoic acid receptor. A particularly useful ligand binding domain is the ecdysone receptor ligand binding domain contained within amino acids 329 to 878 of the Drosophila ecdysone receptor (SEQ ID NO: 18) ; Koelle et al., Cell 67:59-77 (1991) ; Thummel, Cell 83:871-877 (1995) , each of which is incorporated herein by reference) or a glucocorticoid receptor ligand binding domain, encompassed, for example, within amino acids 512 to 795 of the rat glucocorticoid receptor (SEQ ID NO: 20; Miesfeld et al. , Cell 46:389-399 (1986) , which is incorporated herein by reference) . A chimeric protein of the invention containing an ecdysone receptor ligand binding domain has floral meristem identity gene product activity that can be increased in the presence of ecdysone ligand. Similarly, a chimeric protein of the invention containing a glucocorticoid receptor ligand binding domain has floral meristem identity gene product activity that is increased in the presence of glucocorticoid ligand. It is well known that in a chimeric protein containing a heterologous gene product such as adenovirus ElA, c-myc, c-fos, the HIV-1 Rev transactivator, MyoD or maize regulatory factor R fused to the rat glucocorticoid receptor ligand binding domain, activity of the fused heterologous gene product can be increased by glucocorticoid ligand (Eilers et al. , Nature 340:66
(1989); Superti-Furga et al. , Proc. Natl. Acad. Sci .. U.S.A. 88:5114 (1991); Hope et al. , Proc. Natl. Acad. Sci.. U.S.A. 87:7787 (1990); Hollenberg et al. , Proc. Natl. Acad. Sci.. U.S.A. 90:8028 (1993), each of which is incorporated herein by reference) .
A nucleic acid molecule encoding a chimeric protein of the invention can be introduced into a seed plant where, under appropriate conditions, the chimeric protein is expressed. In such a transgenic seed plant, floral meristem identity gene product activity can be increased by contacting the transgenic seed plant with cognate ligand. For example, activity of a heterologous protein fused to a rat glucocorticoid receptor ligand binding domain (amino acids 512 to 795) expressed under the control of the constitutive cauliflower mosaic virus 35S promoter in Arabidopsis was low in the absence of glucocorticoid ligand; whereas, upon contacting the transformed plants with a synthetic glucocorticoid, dexamethasone, activity of the protein was increased greatly (Lloyd et al . , Science 266:436-439 (1994) , which is incorporated herein by reference) . As disclosed herein, a ligand binding domain fused to a floral meristem identity gene product renders the activity of a fused floral meristem identity gene product ligand-dependent such that, upon contacting the transgenic seed plant with cognate ligand, floral meristem identity gene product activity is increased.
Methods for constructing a nucleic acid molecule encoding a chimeric protein of the invention are routine and well known in the art (Sambrook et al . , supra , 1989) . Methods of constructing, for example, a nucleic acid encoding an APl-glucocorticoid receptor ligand binding domain chimeric protein are described in Example IV. For example, the skilled artisan recognizes that a stop codon encoded by the nucleic acid molecule must be removed and that the two nucleic acid molecules must be linked in frame such that the reading frame of the 3 ' nucleic acid molecule coding sequence is preserved. Methods of transforming a seed plant such as an angiosperm or gymnosperm with a nucleic acid molecule are disclosed above and well known in the art (see Examples I, II and III; see, also, Mohoney et al . , U.S. patent number 5,463,174, and Barry et al . , U.S. patent number 5,463,175, each of which is incorporated herein by reference) . As used herein, the term "linked in frame, " when used in reference to two nucleic acid molecules that make up a nucleic acid molecule encoding a chimeric protein, means that the two nucleic acid molecules are linked in the correct reading frame such that, under appropriate conditions, a full-length chimeric protein is expressed. In particular, a 5' nucleic acid molecule, which encodes the amino-terminal portion of the chimeric protein, must be linked to a 3 ' nucleic acid molecule, which encodes the carboxyl-terminal portion of the chimeric protein, such that the carboxyl-terminal portion of the chimeric protein is translated in the correct reading frame. One skilled in the art would recognize that a nucleic acid molecule encoding a chimeric protein of the invention can comprise, for example, a 5' nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a 3 ' nucleic acid molecule encoding a ligand binding domain or can comprise a 5' nucleic acid molecule encoding a ligand binding domain linked in frame to a 3 ' nucleic acid molecule encoding a floral meristem identity gene product. Preferably, a nucleic acid molecule encoding a chimeric protein of the invention comprises a 5' nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a 3 ' nucleic acid molecule encoding a ligand binding domain.
In a transgenic angiosperm containing a chimeric protein of the invention, conversion of shoot meristem to floral meristem can be induced by contacting the transgenic angiosperm with a cognate ligand that is absorbed by the angiosperm and binds the chimeric protein within its ligand binding domain. Thus, the present invention provides a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain is expressed; and contacting the transgenic angiosperm with cognate ligand, where, upon binding of the cognate ligand to the ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm.
The present invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain, to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic angiosperm with ecdysone ligand, where, upon binding of the ecdysone ligand to the ecdysone receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm. Similarly, the invention provides, for example, a method of converting shoot meristem to floral meristem in an angiosperm by introducing into the angiosperm a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, to produce a transgenic angiosperm, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic angiosperm with glucocorticoid ligand, where, upon binding of the glucocorticoid ligand to the glucocorticoid receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby converting shoot meristem to floral meristem in the transgenic angiosperm.
In addition, the invention provides a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein of the invention to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein containing a floral meristem identity gene product fused to a ligand binding domain is expressed; and contacting the transgenic seed plant with cognate ligand, where, upon binding of the cognate ligand to the ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant. The methods of the invention can be practiced with numerous seed plant varieties. The seed plant can be, for example, an angiosperm such as a cereal plant, leguminous plant, hardwood tree or coffee plant, or can be a gymnosperm such as a pine, fir, spruce or redwood tree.
There is provided, for example, a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product linked in frame to a nucleic acid molecule encoding an ecdysone receptor ligand binding domain, to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic seed plant with ecdysone ligand, where, upon binding of the ecdysone ligand to the ecdysone receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant. Similarly, the invention provides, for example, a method of promoting early reproductive development in a seed plant by introducing into the seed plant a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding API, CAL or LFY linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, to produce a transgenic seed plant, where, under appropriate conditions, the chimeric protein is expressed; and contacting the transgenic seed plant with glucocorticoid ligand, where, upon binding of the glucocorticoid ligand to the glucocorticoid receptor ligand binding domain, floral meristem identity gene product activity is increased, thereby promoting early reproductive development in the transgenic seed plant .
As used herein, the term "ligand" means a naturally occurring or synthetic chemical or biological molecule such as a simple or complex organic molecule, a peptide, a protein or an oligonucleotide that specifically binds a ligand binding domain. In the methods of the present invention, a ligand can be used alone or in solution or can be used in conjunction with an acceptable carrier that can serve to stabilize the ligand or promote absorption of the ligand by a seed plant. If desired, a transgenic seed plant of the invention can be contacted with a ligand for increasing floral meristem identity gene product activity in combination with an unrelated molecule such as a plant nutrient, pesticide or insecticide. When used in reference to a particular ligand binding domain, the term "cognate ligand" means a ligand that, under suitable conditions, specifically binds the particular ligand binding domain.
One skilled in the art readily can determine the optimum concentration of cognate ligand needed to bind a ligand binding domain and increase floral meristem identity gene product activity in a transgenic seed plant of the invention. Generally, a concentration of about 1 nM to 10 μM cognate ligand is useful for increasing floral meristem identity gene product activity in a transgenic seed plant expressing a chimeric protein of the invention. Preferably, a concentration of about 100 nM to 1 μM cognate ligand is useful for increasing floral meristem identity gene product activity in a transgenic seed plant containing a chimeric protein of the invention (see, for example, Christopherson et al . , Proc. Natl. Acad. Sci. USA 89:6314-6318 (1992) , which is incorporated herein by reference; also, see Lloyd et al . , supra , 1994) . For example, a concentration of about 100 nM to 1 μM dexamethasone can be useful for increasing floral meristem identity gene product activity in a transgenic seed plant of the invention containing a nucleic acid molecule encoding a chimeric protein, which comprises a nucleic acid molecule encoding a floral meristem identity gene product, such as API or CAL, linked in frame to a nucleic acid molecule encoding a glucocorticoid receptor ligand binding domain, as described in Example IV.
As discussed above, a transgenic seed plant of the invention, such as a transgenic seed plant expressing a chimeric protein of the invention, can be contacted in a variety of manners. A transgenic seed plant can be contacted with cognate ligand, for example, by spraying the seed plant with a gaseous ligand or with solution such as an aqueous solution containing the appropriate ligand; or by adding the cognate ligand to the water supply of a seed plant grown using irrigation or grown hydroponically; or by adding the cognate ligand to the soil or other solid nutrient medium in which a seed plant is grown, whereby the cognate ligand is absorbed into the seed plant to increase floral meristem identity gene product activity. A transgenic seed plant expressing a chimeric protein of the invention also can be contacted with a cognate ligand in aerosol form. In addition, a transgenic seed plant can be contacted with cognate ligand by injecting the seed plant or by immersing the seed plant in a solution containing the cognate ligand.
A transgenic seed plant expressing a chimeric protein of the invention can be contacted individually with cognate ligand, or a group of transgenic seed plants can be contacted en masse to increase floral meristem gene product activity synchronously in all seed plants of the group. Furthermore, a variety of means can be used to contact a transgenic seed plant of the invention with cognate ligand to increase floral meristem identity gene product activity. A transgenic seed plant can be contacted with cognate ligand using, for example, a hand held spraying apparatus; conventional yard "sprinkler"; mechanical spraying system, such as an overhead spraying system in a green house; traditional farm machinery, or "crop dusting." As discussed above in regard to the application of inducing agents, the methods of the invention can be practiced using these and other manual or mechanical means to contact a transgenic seed plant with single or multiple applications of cognate ligand.
The nucleic acid molecules encoding floral meristem identity gene products provided herein also can be useful in generating sterile transgenic seed plants and in methods of producing reproductive sterility in seed plants. The methods of the invention involve cosuppression metholodology, where a nucleic acid molecule in the sense orientation is introduced into a seed plant to suppress expression of a homologous endogenous gene, or involve antisense metholodology. Thus, the present invention provides cosuppression and antisense methods of producing reproductively sterile transgenic seed plants as well as the two types of sterile transgenic seed plants produced by these methods .
A method of the invention for producing a reproductively sterile transgenic seed plant has a variety of uses including safely growing transgenic trees in close contact with interfertile wild trees, increasing wood production and reducing allergenic pollen production. A method for producing reproductive sterility in seed plants, which is useful for transgene containment, can allow, for example, the introduction of transgenic trees into the environment. Of particular concern to the introduction of transgenic trees into the environment is the possibility of enhanced "weediness" or the movement of transgenes by cross-fertilization into gene pools of wild relatives. Most commercially grown forest trees, for example, are grown in close proximity to interfertile wild populations, and gene flow within and among tree populations usually is extensive, making the probability of transgene escape from plantations of fertile transgenic trees high. Regulatory agencies have based approval of transgenic tree planting on sexual isolation of the transgenic species; for example, approval of two field tests for transgenic poplars by the Animal and Plant Health Inspection Service (APHIS) was contingent on the trees not being allowed to flower (see, for example, Strauss et al . , Molec. Breed 1:5-26 (1995) , which is incorporated herein by reference) . Thus, transgene containment through, for example, the use of sterile transgenic trees is central to the usefulness of improved transgenic varieties.
Methods of producing reproductively sterile seed plants also can be useful for increasing wood production, since substantial energy and nutrients are committed to reproductive development in trees. For example, in trees such as radiata pine, white spruce, balsam fir and Douglas fir, reduced growth, as measured by height or stem volume, is correlated with the early production of cones (Strauss et al . , supra, 1995) . Thus, the methods of the invention, which prevent flowering or cone development, for example, by producing reproductive sterility, are useful for growing substantially larger trees, thus increasing wood production.
A method for producing reproductively sterile seed plants also can be useful for alleviating allergies caused by tree pollen. For example, in Japan many people suffer from allergies caused by the most commonly planted forest tree, the conifer sugi (Strauss et al . , supra, 1995) . The methods of the invention, therefore, can be advantageous for preventing pollen formation in seed plants such as the conifer sugi.
Cosuppression, which relies on expression of a nucleic acid molecule in the sense orientation, is a well known methodology that produces coordinate silencing of the introduced nucleic acid molecule and the homologous endogenous gene (see, for example, Flavell, Proc. Natl. Acad. Sci.. USA 91:3490-3496 (1994) , which is incorporated herein by reference; Kooter and Mol, supra, 1993) . Although the mechanism of cosuppression is unknown, cosuppression is induced most strongly by a large number of transgene copies or by overexpression of transgene RNA; cosuppression also can be enhanced by modification of the transgene such that it fails to be translated. Cosuppression has been used successfully to produce sterile plants; for example, a sense nucleic acid molecule containing a full-length fbpl coding sequence under control of the strong CaMV 35S promoter has been introduced into petunia. Two of twenty-one transformants exhibited an abnormal phenotype and contained multiple copies of the fbpl transgene. Furthermore, fbpl expression was undetectable in these sterile transgenic plants, indicating that expression of endogenous fbpl was suppressed (Angenent et al., The Plant Journal 4:101-112 (1993) , which is incorporated herein by reference) .
Antisense nucleic acid molecules, which can act by reducing mRNA translation or by increasing mRNA degradation, for example, also can suppress gene expression of diverse genes and seed plant species (see, for example, Kooter and Mol, Current Opin. Biol. 4:166-171 (1993) , which is incorporated herein by reference; see also Strauss et al . , supra , 1995) . Antisense nucleic acid molecules previously have been used to successfully suppress the expression of a homologous endogenous gene, thereby generating sterile plants. For example, an antisense chalcone synthase gene under control of the CaMV 35S promoter with an anther-specific enhancer sequence effectively suppressed endogenous chalcone synthase expression levels, resulting in male sterility in transgenic petunia plants (van der Meer et al . , The Plant Cell Vol 4:253-262 (1992) , which is incorporated herein by reference) . Similarly, the full-length tomato TM5 MADS box gene, when placed in antisense orientation under control of the CaMV 35S promoter, was used to produce sterile transgenic tomato plants (Pnuell et al . , The Plant Cell Vol. 6, 175-186 (1994) , which is incorporated herein by reference) . Antisense nucleic acid molecules encoding floral meristem identity gene products similarly can be used to produce reproductive sterility in seed plants; however, by preventing reproductive development at the earliest stage, the methods of the invention result in an advantageous energy savings.
Thus, the present invention provides a sterile transgenic seed plant such as an angiosperm or gymnosperm containing one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant. The invention also provides, for example, a sterile transgenic seed plant containing a sense or antisense nucleic acid molecule encoding API, or a fragment thereof; a sense or antisense nucleic acid molecule encoding CAL, or a fragment thereof; and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant. The invention further provides a sterile transgenic seed plant containing a sense or antisense nucleic acid molecule encoding API, or a fragment thereof, and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant.
The present invention also provides methods of producing reproductive sterility in a seed plant such as a tree by introducing into a seed plant one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant. In a preferred embodiment of the invention, there are provided methods of producing reproductive sterility in a seed plant by introducing into a seed plant a sense or antisense nucleic acid molecule encoding API, or a fragment thereof; a sense or antisense nucleic acid molecule encoding CAL, or a fragment thereof; and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant. In another embodiment, the invention provides methods of producing reproductive sterility in a seed plant by introducing into a seed plant a sense or antisense nucleic acid molecule encoding API, or a fragment thereof, and a sense or antisense nucleic acid molecule encoding LFY, or a fragment thereof, to produce a transgenic seed plant, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant .
Sterile seed plants that lack expression of functional API and LFY gene products have been described previously. For example, a non-flowering Arabidopsis Ify apl double mutant has been described in which flowers were transformed into shoot-like structures (see, for example, Bowman et al . , supra , 1993, and Weigel, supra , 1995) . However, in contrast to previously described methods of generating sterile seed plants using mutagenesis, a methodology that is cumbersome or unfeasible in higher plants, the present invention provides a convenient method of producing reproductive sterility in a seed plant using sense or antisense nucleic acid molecules encoding floral meristem identity gene products.
The methods of the invention for producing reproductive sterility rely upon introducing into a seed plant one or more sense or antisense nucleic acid molecules encoding a floral meristem identity gene product, or a fragment thereof, such that expression of API and LFY gene products, including expression of endogenous API and LFY gene products, is suppressed in the transgenic seed plant. The skilled artisan will recognize that effective suppression of endogenous API and LFY gene product expression depends upon the one or more introduced nucleic acid molecules having a high percentage of homology with the corresponding endogenous gene loci.
The homology requirement for effective suppression using sense or antisense nucleic acid molecules can be determined empirically. In general, a minimum of about 80-90% nucleic acid sequence identity is preferred for effective suppression of endogenous floral meristem identity gene product expression. Thus, a nucleic acid molecule encoding a gene ortholog from the family or genus of the seed plant species into which the nucleic acid molecule is to be introduced is preferable in practicing the methods of the invention. More preferably, a nucleic acid molecule encoding a gene ortholog from the same seed plant species into which the nucleic acid molecule is to be introduced is used in the methods of the invention. Although a highly homologous nucleic acid molecule is preferred in the methods of the invention, the sense or antisense nucleic acid molecule need not contain the entire coding sequence of the floral meristem identity gene sequence to be suppressed. Thus, a sense or antisense nucleic acid molecule encoding only a fragment of API, CAL or LFY coding sequence, for example, also can be useful in the methods of the invention. As used herein in reference to a nucleic acid molecule encoding a floral meristem identity gene product, the terms "sense" and "antisense" have their commonly understood meanings.
As used herein in reference to a nucleic acid molecule encoding a floral meristem identity gene product, the term "fragment" means a portion of the nucleic acid sequence containing at least about 50 base pairs to the full-length of the nucleic acid molecule encoding the floral meristem identity gene product. In contrast to an active fragment, as defined herein, a fragment of a nucleic acid molecule encoding a floral meristem identity gene product need not encode a functional portion of a gene product.
In the methods of the invention for producing reproductive sterility, the sense or antisense nucleic acid molecule is expressed under control of a strong promoter that is expressed, at least in part, in floral meristem. The constitutive cauliflower mosaic virus 35S promoter (Odell et al . , supra, 1985) , for example, or other strong promoters as disclosed herein, can be useful in the methods of the invention. In addition, an RNA polymerase III promoter can be useful in methods of producing reproductive sterility using an antisense nucleic acid molecule (see, for example, Bourque and Folk, Plant Mol . Biol . 19:641-647 (1992) , which is incorporated herein by reference) . The present invention also provides novel substantially purified nucleic acid molecules encoding floral meristem identity gene products. The invention provides a substantially purified nucleic acid molecule encoding Brassica oleracea API having the amino acid sequence SEQ ID NO: 4; a substantially purified nucleic acid molecule encoding Brassica ol eracea var. botrytis API having the amino acid sequence SEQ ID NO: 6; or a substantially purified nucleic acid molecule encoding Zea mays API having the amino acid sequence SEQ ID NO: 8. In addition, the invention provides a substantially purified nucleic acid molecule that encodes a Brassica ol eracea API, Brassica oleracea var. botrytis API or Zea mays API and that contains additional 5' or 3 ' noncoding sequence. For example, a substantially purified nucleic acid molecule having a nucleotide sequence such as SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 7 is provided.
As used herein in reference to a particular nucleic acid molecule or gene product, the term "substantially purified" means that the particular nucleic acid molecule or gene product is in a form that is relatively free from contaminating lipids, unrelated gene products, unrelated nucleic acids or other cellular material normally associated with the particular nucleic acid molecule or gene product in a cell.
The present invention also provides a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea API, Brassica oleracea var. botrytis API or Zea mays API, provided that said nucleotide sequence is not present in a nucleic acid molecule encoding a MADS domain containing protein. In particular, such a nucleotide sequence can have at least ten contiguous nucleotides of a nucleic acid molecule encoding an API gene product having the amino acid sequence of SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8. A nucleotide sequence of the invention can have, for example, at least ten contiguous nucleotides of the nucleic acid sequence of SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 7.
As used herein, the term "contiguous, " as used in reference to the nucleotides of a nucleic acid molecule means that the nucleotides of the nucleic acid molecule follow continuously in sequence. Thus, a nucleotide sequence of the invention has at least ten contiguous nucleotides of one of the recited nucleic acid molecules without any extraneous intervening nucleotides.
Explicitly excluded from a nucleotide sequence of the present invention is a nucleotide sequence having at least ten contiguous nucleotides that is present in a nucleic acid molecule encoding a MADS domain containing protein. MADS domain containing proteins are well known in the art as described in Purugganan et al. , supra, 1995.
In general, a nucleotide sequence of the invention can range in size from about 10 nucleotides to the full-length of a cDNA. Such a nucleotide sequence can be chemically synthesized, using routine methods or can be purchased from a commercial source. In addition, such a nucleotide sequence can be obtained by enzymatic methods such as random priming methods, polymerase chain reaction (PCR) methods or by standard restriction endonuclease digestion, followed by denaturation (Sambrook et al . , supra, 1989) .
A nucleotide sequence of the invention can be useful, for example, as a primer for PCR (Innis et al . (ed.) PCR Protocols: A Guide to Methods and Applications. San Diego, CA: Academic Press, Inc. (1990)) . Such a nucleotide sequence generally contains from about 10 to about 50 nucleotides.
A nucleotide sequence of the invention also can be useful in screening a cDNA or genomic library to obtain a related nucleotide sequence. For example, a cDNA library that is prepared from rice or wheat can be screened with a nucleotide sequence having at least ten contiguous nucleotides of the nucleic acid molecule encoding Zea mays API (SEQ ID NO: 7) in order to isolate a rice or wheat ortholog of API . Generally, a nucleotide sequence useful for screening a cDNA or genomic library contains at least about 14 to 16 contiguous nucleotides depending, for example, on the hybridization conditions to be used. A nucleotide sequence containing at least 18 to 20 nucleotides, or containing at least 21 to 25 nucleotides, also can be useful.
A nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Zea mays API (SEQ ID NO: 7) also can be used to screen a Zea mays cDNA library to isolate a sequence that is related to but distinct from API . Similarly, a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea API (SEQ ID NO: 3) or a nucleotide sequence having at least ten contiguous nucleotides of a nucleic acid molecule encoding Brassica oleracea var. botrytis API (SEQ ID NO: 5) can be used to screen a Brassica oleracea or Brassica oleracea var. botrytis cDNA library to isolate a novel sequence that is related to but distinct from API . In addition, a nucleotide sequence of the invention can be useful in analyzing RNA levels or patterns of expression, as by northern blotting or by in si u hybridization to a tissue section. Such a nucleotide sequence also can be used in Southern blot analysis to evaluate gene structure and identify the presence of related gene sequences.
The invention also provides a vector containing a nucleic acid molecule encoding a Brassica oleracea API gene product, Brassica oleracea var. botrytis API gene product or Zea mays API gene product. A vector can be a cloning vector or an expression vector and provides a means to transfer an exogenous nucleic acid molecule into a host cell, which can be a prokaryotic or eukaryotic cell. Such vectors are well known and include plasmids, phage vectors and viral vectors. Various vectors and methods for introducing such vectors into a cell are described, for example, by Sambrook et al. , supra , 1989, and by Glick and Thompson, supra, 1993) . The invention further provides a method of producing an API gene product by expressing a nucleic acid molecule encoding an API gene product. Thus, a Brassica oleracea API gene product can be produced according to a method of the invention by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 4 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 3. Similarly, a Brassica oleracea var. botrytis API gene product can be produced according to a method of the invention by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 6 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 5. A Zea mays API gene product can be produced by expressing a nucleic acid molecule having the amino acid sequence of SEQ ID NO: 8 or by expressing a nucleic acid molecule having the nucleic acid sequence of SEQ ID NO: 7.
The invention also provides a substantially purified API gene product, such as a substantially purified Brassica oleracea API gene product having amino acid sequence SEQ ID NO: 4; a substantially purified Brassica oleracea var. botrytis API gene product having amino acid sequence SEQ ID NO: 6; or a substantially purified Zea mays API gene product having amino acid sequence SEQ ID NO: 8. As used herein, the term "gene product" is used in its broadest sense and includes proteins, polypeptides and peptides, which are related in that each consists of a sequence of amino acids joined by peptide bonds. For convenience, the terms "gene product," "protein" and "polypeptide" are used interchangeably. While no specific attempt is made to distinguish the size limitations of a protein and a peptide, one skilled in the art would understand that proteins generally consist of at least about 50 to 100 amino acids and that peptides generally consist of at least two amino acids up to a few dozen amino acids. The term gene product as used herein includes any such amino acid sequence.
An active fragment of a floral meristem identity gene product also can be useful in the methods of the invention. As used herein, the term "active fragment," means a polypeptide portion of a floral meristem identity gene product that can convert shoot meristem to floral meristem in an angiosperm. An active fragment of an API gene product can consist, for example, of an amino acid sequence that is derived from SEQ ID NO: 2, SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8 and has activity in converting shoot meristem to floral meristem in an angiosperm. An active fragment can be, for example, an amino terminal, carboxyl terminal or internal fragment of Zea mays API (SEQ ID NO: 8) that has activity in converting shoot meristem to floral meristem in an angiosperm. The skilled artisan will recognize that an active fragment of a floral meristem identity gene product, as defined herein, can be useful in the methods of the invention for converting shoot meristem to floral meristem in an angiosperm, for producing early reproductive development in a seed plant, or for producing reproductive sterility in a seed plant. Such an active fragment can be produced using well known recombinant DNA methods (Sambrook et al., supra , 1989) . Similarly, an active fragment can be, for example, an amino terminal, carboxyl terminal or internal fragment of Arabidopsis thaliana CAL (SEQ ID NO: 10) or Brassica ol eracea CAL (SEQ ID NO: 12) that has activity, for example, in converting shoot meristem to floral meristem in an angiosperm. The product of the BobCAL gene (SEQ ID NO: 24) , which is truncated at amino acid 150, lacks activity in converting shoot meristem to floral meristem and, therefore, is an example of a polypeptide portion of a CAL floral meristem identity gene product that is not an "active fragment" of a floral meristem identity gene product.
An active fragment of a floral meristem identity gene product, which can convert shoot meristem to floral meristem in an angiosperm, can be identified using the methods described in Examples I, II and III. Briefly, an angiosperm such as Arabidopsis can be transformed with a nucleic acid molecule encoding a portion of a floral meristem identity gene product in order to determine whether the portion can convert shoot meristem to floral meristem and, therefore, is an active fragment of a floral meristem identity gene product.
The invention further provides an antibody that specifically binds an API gene product having the amino acid sequence of Brassica oleracea API (SEQ ID NO: 4) ; the amino acid sequence of Brassica oleracea var . botrytis API (SEQ ID NO: 6) ; or the amino acid sequence of Zea mays API (SEQ ID NO: 8) . As used herein, the term "antibody" is used in its broadest sense to include naturally occurring and non-naturally occurring polyclonal and monoclonal antibodies, as well as a polypeptide fragment of an antibody that retains a specific binding activity of at least about 1 x 105 M"1, and preferably about 1 x 106 M"1, for an API gene product having amino acid sequence SEQ ID NO: 4, SEQ ID NO: 6 or SEQ ID NO: 8. One skilled in the art would know that an antibody fragment such as a Fab, F(ab')2 or Fv fragment can retain specific binding activity for an API gene product and, thus, is included within the definition of an antibody. A non-naturally occurring antibody, or fragment thereof, such as a chimeric antibody or humanized antibody also is included within the meaning of the term antibody. Such a non-naturally occurring antibody can be constructed using solid phase peptide synthesis, produced recombinantly or obtained, for example, by screening a combinatorial library consisting of variable heavy chains and variable light chains as described by Huse et al . , Science 246:1275-1281 (1989) , which is incorporated herein by reference.
An antibody "specific for" a gene product, or that "specifically binds" a gene product, binds with substantially higher affinity to that gene product than to an unrelated gene product. An antibody specific for a gene product also can have specificity for a related gene product. For example, an antibody specific for a Zea mays API gene product also can specifically bind an Arabidopsis thaliana API gene product or a Brassica oleracea API gene product.
An antibody that specifically binds a Zea mays API gene product (SEQ ID NO: 8) , for example, can be prepared using a Zea mays API fusion protein or a synthetic peptide encoding a portion of Zea mays API (SEQ ID NO: 8) as an immunogen. One skilled in the art would know that purified Zea mays API gene product, which can be prepared from a natural source or produced recombinantly according to a method of the invention, or a fragment of a Zea mays API gene product, including a peptide portion of Zea mays API such as a synthetic peptide, can be used as an immunogen. For example, preparation of antisera that specifically binds an API gene product is described in Example VI using a GST-API fusion protein containing amino acids 190 to 251 of API as an immunogen. In addition, a non-immunogenic fragment or synthetic peptide derived from Zea mays API, for example, can be made immunogenic by coupling the non-immunogenic fragment or peptide (hapten) to a carrier molecule such as bovine serum albumin (BSA) or keyhole limpet hemocyanin (KLH) . In addition, various other carrier molecules and methods for coupling a hapten to a carrier molecule are well known in the art as described, for example, by Harlow and Lane, Antibodies: A Laboratory Manual (Cold Spring Harbor Laboratory Press, 1988) , which is incorporated herein by reference.
The invention also provides an expression vector containing a nucleic acid molecule encoding a floral meristem identity gene product such as API, CAL or LFY operably linked to a heterologous regulatory element. Expression vectors are well known in the art and provide a means to transfer and express an exogenous nucleic acid molecule into a host cell. Thus, an expression vector contains, for example, transcription start and stop sites such as a TATA sequence and a poly-A signal sequence, as well as a translation start site such as a ribosome binding site and a stop codon, if not present in the coding sequence.
As used herein, the term "heterologous regulatory element" means a regulatory element derived from a different gene than the gene encoding the floral meristem identity gene product to which it is operably linked. A vector containing a floral meristem identity gene, however, contains a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a homolgous regulatory element . Such a vector does not contain a nucleic acid molecule encoding a floral meristem identity gene product operably linked to a heterologous regulatory element and, thus, is not an expression vector of the invention.
The invention further provides a plant expression vector containing a floral meristem identity gene product operably linked to a heterologous regulatory element. For example, a plant expression vector containing a nucleic acid molecule encoding an API gene product having at least about 70 percent amino acid identity with an amino acid sequence of Arabidopsis thaliana API (SEQ ID NO: 2) in the region from amino acid 1 to amino acid 163 or with the amino acid sequence of Zea mays API (SEQ ID NO: 8) in the region from amino acid 1 to amino acid 163 is provided. A plant expression vector containing a floral meristem identity gene product operably linked to a constitutive regulatory element, such as the cauliflower mosaic virus 35S promoter, is provided. In addition, a plant expression vector containing a floral meristem identity gene product operably linked to an inducible regulatory element is provided.
A useful plant expression vector can contain a constitutive regulatory element for expression of an exogenous nucleic acid molecule in all or most tissues of a seed plant. The use of a constitutive regulatory element can be particularly advantageous because expression from the element is relatively independent of developmentally regulated or tissue-specific factors. For example, the cauliflower mosaic virus 35S promoter (CaMV 35S) is a well-characterized constitutive regulatory element that produces a high level of expression in all plant tissues (Odell et al . , Nature 313:810-812 (1985) , which is incorporated herein by reference) . Furthermore, the CaMV 35S promoter can be particularly useful due to its activity in numerous different seed plant species (Benfey and Chua, Science 250:959-966 (1990) , which is incorporated herein by reference; Odell et al . , supra, 1985) . Other constitutive regulatory elements useful for expression in a seed plant include, for example, the cauliflower mosaic virus 19S promoter; the Figwort mosaic virus promoter (Singer et al . , Plant Mol . Biol . 14:433 (1990) , which is incorporated herein by reference) ; and the nopaline synthase (nos) gene promoter (An, Plant Physiol . 81:86 (1986) , which is incorporated herein by reference) .
In addition, an expression vector of the invention can contain a regulated gene regulatory element such as a promoter or enhancer element. A particularly useful regulated promoter is a tissue-specific promoter such as the shoot meristem-specific CDC2 promoter
(Hemerly et al . , Plant Cell 5:1711-1723 (1993) , which is incorporated herein by reference) , or the AGL8 promoter, which is active in the apical shoot meristem immediately after the transition to flowering (Mandel and Yanofsky, supra , 1995) . The promoter of the SHOOTMERISTEMLESS gene, which is expressed exclusively in the shoot meristem beginning within an embryo and throughout the angiosperm life cycle, also can be a particularly useful tissue-specific gene regulatory element (see Long et al . , Nature 379:66-69 (1996) , which is incorporated herein by reference) .
An appropriate regulatory element such as a promoter is selected depending on the desired pattern or level of expression of a nucleic acid molecule linked thereto. For example, a constitutive promoter, which is active in all tissues, would be appropriate if expression of a gene product in all plant tissues is desired. In addition, a developmentally regulated or tissue-specific regulatory element can be useful to direct floral meristem identity gene expression to specific tissues, for example. As discussed above, inducible expression also can be particularly useful to manipulate the timing of gene expression such that, for example, a population of transgenic seed plants of the invention that contain an expression vector comprising a floral meristem identity gene linked to an inducible regulatory element can undergo early reproductive development at essentially the same time. Selecting the time of reproductive development can be useful, for example, in manipulating the time of crop harvest.
Using nucleic acid molecules encoding API provided herein, the skilled artisan can isolate, if desired, a novel ortholog of API. For example, one would choose a region of API that is highly conserved among known API sequences such as a region that is highly conserved between Arabidopsis API (SEQ ID NO: 1) and Zea mays API (GenBank accession number L46400; SEQ ID NO: 7) to screen a cDNA or genomic library of interest for a novel API ortholog. One can use a full-length
Arabidopsis API (SEQ ID NO: 1) , for example, to isolate a novel ortholog of API (see Example V) . If desired, the region encoding the MADS domain, which is common to a number of genes, can be excluded, from the sequence used as a probe. Similarly, the skilled artisan knows that a nucleic acid molecule encoding a full-length CAL cDNA such as Arabidopsis CAL (SEQ ID NO: 9) or Brassica oleracea CAL (SEQ ID NO: 11) can be useful in isolating a novel CAL ortholog. For example, the Arabidopsis API cDNA (SEQ ID NO: 1) can be used as a probe to identify and isolate a novel API ortholog. Using a nucleotide sequence derived from a conserved region of SEQ ID NO: 1, SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 7, for example, a nucleic acid molecule encoding a novel API ortholog can be isolated from other plant species. Using methods such as those described by Purugganan et al. , supra , 1995, one can readily confirm that the newly isolated molecule is an API ortholog. Thus, a nucleic acid molecule encoding an API gene product, which has at least about 70 percent amino acid identity with the amino acid sequence of SEQ ID NO: 2 {Arabidopsis API) in the region from amino acid 1 to amino acid 163 or with the amino acid sequence of SEQ ID NO: 8 ( Zea mays API) in the region from amino acid 1 to amino acid 163 can be isolated and identified using well known methods.
Similarly, in order to isolate an ortholog of CAL, one can choose a region of CAL that is highly conserved among known CAL cDNAs, such as a region conserved between Arabidopsis CAL (SEQ ID NO: 9) and Brassica oleracea CAL (SEQ ID NO: 11) . The Arabidopsis CAL cDNA (SEQ ID NO: 9) or Brassica oleracea CAL cDNA (SEQ ID NO: 11) , or a nucleotide fragment thereof, can be used to identify and isolate a novel CAL ortholog using methods such as those described in Example V. In order to identify related MADS domain genes, a nucleotide sequence derived from the MADS domain of API or CAL, for example, can be useful to isolate a related gene sequence encoding this DNA-binding motif. Hybridization conditions for isolating a gene ortholog, for example, are relatively stringent such that non-specific hybridization is minimized. Appropriate hybridization conditions can be determined empirically, or can be estimated based, for example, on the relative G+C content of the probe and the number of mismatches between the probe and target sequence, if known. Hybridization conditions can be adjusted as desired by varying, for example, the temperature of hybridizing or the salt concentration (Sambrook, supra, 1989) .
The invention also provides a kit for converting shoot meristem to floral meristem in an angiosperm, which contains a plant expression vector having a nucleic acid molecule encoding a floral meristem identity gene product. A kit for promoting early reproductive development in a seed plant, which contains a plant expression vector having a nucleic acid molecule encoding a floral meristem identity gene product, also is provided. If desired, such kits can contain appropriate reagents to facilitate high efficiency transformation of a seed plant with a plant expression vector of the invention. Furthermore, if desired, a control vector lacking a floral meristem identity gene can be included in the kits to determine, for example, the efficiency of transformation.
The following examples are intended to illustrate but not limit the present invention. EXAMPLE I
Conversion of shoot meristem to floral meristem and earlv reproductive development in an APETALAl transgenic plant
This example describes methods for producing a transgenic Arabidopsis plant containing ectopically expressed API .
&_. Ectopic expression of APETALAl converts infloreaπfincp. shoots into flowers
Transgenic plants that constitutively express API from the cauliflower mosaic virus 35S (CaMV 35S) promoter were produced to determine whether ectopic API expression was sufficient to convert shoot meristem to floral meristem. The API coding sequence was placed under control of the CaMV 35S promoter (Odell et al . , supra , 1985) as follows. Bam HI linkers were ligated to the Hinc II site of the full-length API complementary DNA (Mandel et al . , supra, (1992) , which is incorporated herein by reference) in pAM116, and the resulting Bam HI fragment was fused to the CaMV 35S promoter (Jack et al . , ££11 76:703-716 (1994) , which is incorporated herein by reference) in pCGNlβ to create pAM563.
Transgenic 35S -API Arabidopsis plants of the Columbia ecotype were generated by selecting kana ycin-resistant plants after Agrobacterium-mediated plant transformation using the in planta method (Bechtold et al., CR. Acad. Sci. Paris 316:1194-1199 (1993) , which is incorporated herein by reference) . All analyses were performed in subsequent generations. Approximately 120 independent transgenic lines that displayed the described phenotypes were obtained.
Remarkably, in 35S-AP1 transgenic plants, the normally indeterminate shoot apex prematurely terminated as a floral meristem and formed a terminal flower. Generally, lateral meristems that normally would produce inflorescence shoots also were converted into solitary flowers. These results demonstrate that ectopic expression of API in shoot meristem is sufficient to convert shoot meristem to floral meristem, even though API normally is not absolutely required to specify floral meristem identity.
E LEAFY is not required for the conversion of inflorescence s QPts to flowers jn flπ APETALAl transgenic plant
To determine whether the 35S -API transgene causes ectopic LFY activity, and whether ectopic LFY activity is required for the conversion of shoot meristem to floral meristem, the 35S-AP1 transgene was introduced into Arabidopsis Ify mutants. The 35S-AP1 transgene was crossed into the strong lfy- 6 mutant background and the F2 progeny were analyzed.
Mutant lfy plants containing the 35S-AP1 transgene displayed the same conversion of apical and lateral shoot meristem to floral meristem as was observed in transgenics containing wild type LFY. However, the resulting flowers had the typical lfy mutant phenotype, in which floral organs developed as sepaloid and carpelloid structures, with an absence of petals and stamens . These results demonstrate that LFY is not required for the conversion of shoot meristem to floral meristem in a transgenic angiosperm that ectopically expresses API .
C. APETALAl is not sufficient to specify organ fate
As well as being involved in the early step of specifying floral meristem identity, API also is involved in specifying sepal and petal identity at a later stage in flower development. Although API RNA initially is expressed throughout the young flower primordium, it is later excluded from stamen and carpel primordia (Mandel et al . , supra , 1992) . Since the CaMV 35S promoter is active in all floral organs, 35S-AP1 transgenic plants are likely to ectopically express API in stamens and carpels. However, the normal stamens and carpels 35S-AP1 in transgenic plants indicate that API is not sufficient to specify sepal and petal organ fate.
LL Ectopic expression of APETALAl causes early reproductive development
In addition to its ability to alter inflorescence meristem identity, ectopic expression of
API also influences the vegetative phase of plant growth. Wild-type Arabidopsis plants have a vegetative phase 100 during which a basal rosette of leaves is produced, followed by the transition to reproductive growth. The transition from vegetative to reproductive growth was measured both in terms of the number of days post-germination until the first visible flowers were observed, and by counting the number of leaves. Under continuous light, wild-type and 35S-AP1 transgenic plants flowered after producing 9.88 ± 1.45 and 4.16+0.97 leaves, respectively. Under short-day growth conditions (8 hours light, 16 hours dark, 24 C) , wild-type and 35S-AP1 transgenic plants flowered after producing 52.42±3.47 and 7.4±1.18 leaves, respectively.
Under continuous light growth conditions, flowers appear on wild-type Arabidopsis plants after approximately 18 days, whereas the 35S-AP1 transgenic plants flowered after an average of only 10 days. Furthermore, under short-day growth conditions, flowering is delayed in wild-type Arabidopsis plants until approximately 10 weeks after germination, whereas 35S-AP1 transgenic plants flowered in less than about five weeks. Thus, ectopic API expression significantly reduced the time of reproductive development, as indicated by the time of flowering. Ecotopic API expression also reduced the delay of flowering caused by short day growth conditions. EXAMPLE II
Conversion of inflorescence shoots into flowers in an CAULIFLOWER transgenic plant
This example describes methods for producing a transgenic Arabidopsis plant that ectopically expresses CAL.
Transgenic Arabidopsis plants that ectopically express CAL in shoot meristem were generated. The full-length CAL cDNA was inserted downstream of the CaMV 35S promoter in the Eco RI site of pMON530 (Monsanto Co., St. Louis, Missouri) This plasmid was introduced into Agrobacterium strain ASE and used to transform the Columbia ecotype of Arabidopsis using the modified vacuum infiltration method described by Bechtold et al . , supra, 1993. The 96 transgenic lines that harbored the 35S-CAL construct had a range of weak to strong phenotypes . Transgenic plants with the strongest phenotypes (27 lines) had a phenotype that closely resembled the tfl mutant phenotype.
The apical and lateral inflorescence shoots of
35S-CAL transgenic plants were converted into flowers. Furthermore, the 35S-CAL transgenic plants were characterized by early reproductive development, as indicated by an early flowering phenotype. These results demonstrate that ectopic expression of CAL is sufficient for the conversion of shoots to flowers and for promoting early reproductive development. EXAMPLE III
Conversion of shoots into flowers and earlv reproductive developemnt in a LEAFY transgenic plant
This example describes methods for producing transgenic Arabidopsis ectopically expressing LFY and transgenic aspen ectopically expressing LFY.
A. Conversion of Arabidopsis shoots and earlv Arabidopsis reproductive development bv LEAFY
Transgenic Arabidopsis plants were generated by transforming Arabidopsis with LFY under the control of the CaMV 35S promoter (Odell et al . , supra , (1985)) . A LFY complementary DNA (Weigel et al, Cell 69:843-859 (1992) , which is incorporated herein by reference) was inserted into a T-DNA transformation vector containing a CaMV 35S promoter and a 3' nos cassette (Jack et al . , supra , 1994) . Transformed seedlings were selected for kanamycin resistance. Several hundred Arabidopsis transformants in three different genetic backgrounds (Nossen, Wassilewskija and Columbia) were recovered, and several lines were characterized in detail.
High levels of LFY RNA expression were detected by northern blot analysis in 35S-LFY transgenics. In general, Nossen lines had weaker phenotypes, especially when grown under short day conditions. The 35S-LFY transgene of line DW151 . Il l (ecotype Wassilewskija) was introgressed into the erecta background by backcrossing to a Landsberg erecta strain. Plants were grown under 16 hours light and 8 hours dark. The 35S -LFY transgene provided at least as much LFY activity as the endogenous gene and completely suppressed the lfy mutant phenotype when crossed into the background of the lfy- 6 null allele.
Most 35S -LFY transgenic plants lines demonstrated a very similar, dominant and heritable phenotype. Secondary shoots that arose in lateral positions were consistently replaced by solitary flowers, and higher-order shoots were absent. Although the number of rosette leaves was unchanged from the wild type, 35S -LFY plants flowered earlier than wild type: the solitary flowers in the axils of the rosette leaves developed and opened precociously. In addition, the primary shoot terminated with a flower. In 35S-LFY transgenics having the most extreme phenotypes, a terminal flower was formed immediately above the rosette. This gain of function phenotype (conversion of shoots to flowers) is the opposite of the lfy loss of function phenotype (conversion of flowers to shoots) . These results demonstrate that LFY encodes a developmental switch that is both sufficient and necessary to convert shoot meristem to flower meristem in an angiosperm.
The effects of constitutive LFY expression differ for primary and secondary shoot meristems. Secondary meristems were transformed into flower meristem, apparently as soon as it developed, and produced only a single, solitary flower. In contrast, primary shoot meristem produced leaves and lateral flowers before being consumed in the formation of a terminal flower. These developmental differences indicate that a meristem must acquire competence to respond to the activity of a floral meristem identity gene such as LFY.
B. Conversion of aspen shoots bv LEAFY
Given that constitutive expression of LFY induced early reproductive development as indicated by precocious flowering during the vegetative phase of Arabidopsis , the effect of LFY on the flowering of other seed plant species was examined. The perennial tree, hybrid aspen, is derived from parental species that flower naturally only after 8-20 years of growth (Schopmeyer (ed.) , USDA Agriculture Handbook 450: Seeds of Woody Plants in the United States. Washington DC, USA: US Government Printing Office, pp. 645-655 (1974)) . 35S -LFY transgenic aspen plants were obtained by Agrobacterium-mediated transformation of stem segments and subsequent regeneration of transgenic shoots in tissue culture.
Hybrid aspen was transformed exactly as described by Nilsson et al . (Transgen. Res. 1:209-220 (1992) , which is incorporated herein by reference) . Levels of LFY RNA expression were similar to those of 35S -LFY Arabidopsis, as determined by northern blot analysis. The number of vegetative leaves varied between different regenerating shoots, and those with a higher number of vegetative leaves formed roots, allowing for transfer to the greenhouse. Individual flowers were removed either from primary transformants that had been transferred to the greenhouse, or from catkins collected in spring, 1995, at Carlshem, Umea, Sweden) from a tree whose age was determined by counting the number of annual rings in a core extracted with an increment borer at 1.5 meters above ground level . Flowers were fixed in formaldehyde/acetic acid/ethanol and destained in ethanol before photography.
The overall phenotype of 35S -LFY transgenic aspen was similar to that of 35S -LFY Arabidopsis . In wild-type plants of both species, flowers normally are formed in lateral positions on inflorescence shoots. In aspen, these inflorescence shoots, called catkins, arise from the leaf axils of adult trees. In both 35S -LFY Arabidopsis and 35S -LFY aspen, solitary flowers were formed instead of shoots in the axils of vegetative leaves. Moreover, as in Arabidopsis, the secondary shoots of transgenic aspen were more severely affected than the primary shoot.
Regenerating 35S -LFY aspen shoots initially produced solitary flowers in the axils of normal leaves. However, the number of vegetative leaves was limited, and the shoot meristem was prematurely consumed in the formation of an aberrant terminal flower. Early reproductive development as demonstrated by precocious flowering was specific to 35S -LFY transformants and was not observed in non-transgenic controls. Furthermore, not a single instance of precocious flower development has been observed in more than 1,500 other lines of transgenic aspen generated with various constructs from 1989 to 1995 at the Swedish University of Agricultural Sciences. These results demonstrate that a floral meristem identity gene product can promote early reproductive development in a heterologous angiosperm species.
EXAMPLE IV
Dexamethasone-inducible floral meristem identity gene activity in transgenic plants
This example describes the construction and characterization of an APl-glucocorticoid receptor ligand binding domain chimera and its dexamethasone-inducible activity in Arabidopsis .
A. Construction and characterization of an
APl-glucocorticoid receptor liαand binding domain chimera
A nucleic acid molecule encoding an APl-glucocorticoid receptor ligand binding domain chimera was prepared as follows. Primers corresponding to the translation initiation and termination codons of API were synthesized for PCR amplification of the Arabidopsis API cDNA. Primer 5 ' -GGATCCGGATCAAAAATGGGAAGGGGTAG-3 ' (SEQ ID NO: 25) contains a translation initiation codon, which is indicated by underlining. Primer 5 ' -GGATCCGCTGCGGCGAAGCAGCCAAGGTTG-3 ' (SEQ ID NO: 26) contains a modified translation termination site, which is indicated by underlining and allows the nucleic acid molecule encoding API to be linked in frame to the nucleic acid molecule encoding the glucocorticoid receptor (GR) ligand binding domain.
The full length Arabidopsis API cDNA in pAM116
(see Example I) was used as the template for PCR amplification with primers SEQ ID NOS: 25 and 26, each of which contain a Bam HI site. The resulting Bam HI fragment, which encodes the full-length Arabidopsis API cDNA except for the translation termination codon, was cloned into the unique Bam HI site of the GR fusion vector constructed by Lloyd et al . , supra, 1994. DNA sequence analyses confirmed that the construct contained the predicted nucleotide sequence.
The resulting AP1-GR construct was introduced into Agrobacterium strain ASE, and apl -15 mutant plants were transformed using the vacuum infiltration method described in Example I . Approximately 100 independently derived lines were selected in kanamycin for further analysis.
B_. Dexamethasone-inducible activity of an
APl-glucocorticoid receptor ligand binding domain chimera in Arabidopsis
Kanamycin-resistant transgenic Arabidopsis lines are analyzed in subsequent generations for API activity. After application of dexamethasone to transgenic plants, API activity is monitored by visual inspection for 1) flowering that is earlier than wild-type or 2) partial or complete rescue of the apl mutant phenotype.
To assay for dexamethasone-inducible activity, plants are watered with varying concentrations of dexamethasone. A range of dexamethasone concentrations are tested to determine overall levels of API activity and to determine the resulting phenotypes. A concentration of 1 μM or less dexamethasone preferably is used for induction of API activity.
In addition, dexamethasone is applied directly to plants by spraying. Spraying, like watering, leads to a significant induction of API activity, resulting in the corresponding rescue of the apl mutant phenotype and early reproductive development. Although a single application of dexamethasone is sufficient to increase API activity and promote early reproductive development, dexamethasone is applied either once, or repeatedly, and the treatments compared for any observed differences under long or short day conditions as disclosed below.
Dexamethasone is applied to plants at various times post-germination. For example, a large number of AP1-GR transgenic Arabidopsis plants are grown, some of which are treated with dexamethasone on day 1 post-germination, some on day 2, etc., all the way up until and beyond the time at which Arabidopsis plants normally flower. These analyses include plants grown under long day, short day, and under a variety of temperatures. For example, Arabidopsis plants, which typically are grown at 25°C, also can be analyzed for API activity at 20°C and 15°C (see, for example, Bowman et al .
(ed.), Arabidopsis: An Atlas of Morphology and Development . New York: Springer (1994) , which is incorporated by reference herein) .
EXAMPLE V
Identification and characterization of the Zea mays APETALAl cDNA
This example describes the isolation and characterization of Zea mays ZAP1 complementary DNA, which is an ortholog of the Arabidopsis floral meristem identity gene API .
Δ-, Ident fication and characterization of a nucleic acid sequence encoding ZAP1
The utility of using a cloned floral homeotic gene from Arabidopsis to identify the putative ortholog in maize has been demonstrated previously (Schmidt et al . , supra , (1993) , which is incorporated herein by reference) . As described in Mena et al . (Plant J. 8(6) :845-854 (1995)) , the maize ortholog of the Arabidopsis API floral meristem identity gene, was isolated by screening a Zea mays ear cDNA library using the Arabidopsis API cDNA (SEQ ID NO: 1) as a probe. A cDNA library was prepared from wild-type immature ears as described by Schmidt et al . , supra, 1993, and screened using the Arabidopsis API cDNA SEQ ID NO: 1 as the probe. Low-stringency hybridizations with the API probe were conducted as described previously for the isolation of ZAG1 using the AG cDNA as a probe (Schmidt et al . , supra, 1993) . Positive plaques were isolated and cDNAs were recovered in Bluescript by in vivo excision.
Double-stranded sequencing was performed using the Sequenase Version 2.0 kit (U.S. Biochemical, Cleveland, Ohio) according to the manufacturer's protocol.
The nucleotide sequence and deduced amino acid sequence of the ZAPl cDNA are provided as SEQ ID NOS: 7 and 8. The deduced amino acid sequence for ZAP2 shares 89% identity with Arabidopsis API through the MADS domain (amino acids 1 to 57) and 70% identity through the first 160 amino acids, which includes the K domain. The high level of amino acid sequence identity between ZAPl and API (SEQ ID NOS: 8 and 2), as well as the expression pattern of ZAPl in maize florets (see below) , indicate that ZAPl is the maize ortholog of Arabidopsis API .
B. RNA expression pattern of ZAPl
Total RNA was isolated from different maize tissues as described by Cone et al . , Proc. Natl. Acad. Sci .. USA 83:9631-9635 (1986) , which is incorporated herein by reference. RNA was prepared from ears or tassels at early developing stages (approximately 2 cm in size) , husk leaves from developing ear shoots, shoots and roots of germinated seedlings, leaves from 2 to 3 week old plants and endosperm, and embryos at 18 days after pollination. Mature floral organs were dissected from ears at the time of silk emergence or from tassels at several days pre-emergence. To study expression patterns in the mature female flower, carpels were isolated and the remaining sterile organs were pooled and analyzed together. In the same way, stamens were dissected and collected from male florets and the remaining organs (excluding the glumes) were pooled as one sample.
RNA concentration and purity was determined by absorbance at 260/280 nM, and equal amounts (10 μg) were fractionated on formaldehyde-agarose gels. Gels were stained in a solution of 0.125 μg ml"1 acridine orange to confirm the integrity of the RNA samples and the uniformity of gel loading, then RNA was blotted on to Hybond-N® membranes (Amersham International, Arlington Heights, Illinois) according to the manufacturer's instructions. Prehybridization and hybridization solutions were prepared as previously described (Schmidt et al., Science 238:960-963 (1987), which is incorporated herein by reference) . The probe for ZAPl RNA expression studies was a 445 bp Sac 1/ Nsi I fragment from the 3' end of the cDNA. Southern blot analyses were conducted to establish conditions for specific hybridization of this probe. No cross-hybridization was detected using hybridization at 60°C in 50% formamide and washes at 65°C in O.lx SSC and 0.5% SDS.
The strong sequence similarity between ZAPl and API indicated that ZAPl was the ortholog of this Arabidopsis floral meristem identity gene. As a first approximation of whether the pattern of ZAPl expression paralleled that of API , a blot of total RNA from vegetative and reproductive organs was hybridized with a gene-specific fragment of the ZAPl cDNA (nucleotides 370 to 820 of SEQ ID NO: 7) . ZAPl RNA was detected only in male and female inflorescences and in the husk leaves that surround the developing ear. No ZAPl RNA expression was detectable in RNA isolated from root, shoot, leaf, endosperm, or embryo tissue. The restriction of ZAPl expression to terminal and axillary inflorescences is consistent with ZAPl being the Arabidopsis API ortholog.
Male and female florets were isolated from mature inflorescences, and the reproductive organs were separated from the remainder of the floret. RNA was isolated from the reproductive and the sterile portions of the florets. ZAPl RNA expression was not detected in maize stamens or carpels, whereas high levels of ZAPl RNA were present in developing ear and tassel florets from which stamens and carpels had been removed. Thus, the exclusion of ZAPl expression from stamens and carpels and its inclusion in the RNA of the non-reproductive portions of the floret (lodicules, lemma and palea) is similar to the pattern of expression of API in flowers of Arabi dopsi s .
EXAMPLE VI Production and characterization of ant -API antisera
This example demonstrates the production and characterization of antisera that specifically binds the Arabidopsis API gene product. Western blotting was performed with plant tissue extracts and crude antisera from rabbits immunized with a GST-API fusion protein encoding amino acids 190 to 251 of Arabidopsis thaliana API (SEQ ID NO: 2) . The C-terminal region of API spanning amino acids 190 to 251 does not include the MADS domain, which is common to a number of proteins. As shown in Figure 1, the anti-API sera reacted with a 90 kDa protein in inflorescence tissue extracts prepared from wild type Arabidopsis thaliana (Landsburg ecotype) . As expected, this reactivity was absent from Arabidopsis mutants lacking API such as apl -1 or apl - 15 (compare lanes 3 and 4 to lane 2) .
API expression was reduced significantly in inflorescence tissue extracts from the Arabidopsis ap2-2 mutant as compared to wild type plants, indicating that AP2 normally functions to increase or maintain the level of API RNA or protein expression (see lanes 2 and 5) . Similarly, reduced API expression in lfy- 6 mutant plants indicates that LFY normally functions to enhance expression of API at the RNA or protein level (see lanes 2 and 6) . In contrast to the results seen in ap2-2 or lfy- 6 mutant inflorescences, API protein expression in inflorescence tissue from ag-2 mutants is enhanced strikingly as compared to the level of API protein seen in wild type inflorescences (see lanes 1 and 2) . These results indicate that the AGAMOUS gene product (AG) negatively regulates API RNA or protein expression. Western analysis further demonstrated that API protein expression is specific to inflorescence tissue since API reactivity is absent from leaf tissue prepared from wild type Arabidopsis plants (Columbia ecotype; lane 7) . In transgenic plants constitutively expressing API from the CaMV promoter, however, API protein expression readily was detectable in leaf tissue as shown in lane 8. Reactivity of the anti-API antisera in 35S-AP1 transgenic leaves but not in wild type Arabidopsis leaves confirmed the specificity of the anti-API sera.
Specificity of the anti-API sera also was demonstrated by specific binding of the antisera to API but not to the closely related CAL gene product. For example, inflorescence tissue extract from an apl - 1 or apl -15 mutant plant (lane 3 or 4, respectively) , which contains CAL but not API, was not reactive with the anti-API rabbit sera. These data indicate that the anti-API sera does not react with the CAL gene product.
For production of anti-API sera, a Sty I fragment of the Arabidopsis thaliana API cDNA, which encodes amino acids 190 to 251, was gel purified, blunt ended with Klenow fragment and ligated into the Sma I site of pGEX3X (Pharmacia, Piscataway, NJ) to make pGEX-APl190_2Si for expression of a GST-AP1190.2S1 fusion protein. DH5 E. coli were transformed with the resulting vector by standard techniques (Sambrook, supra , 1989) . A bacterial culture of a pGEX-APl190-251 transformant was grown to an OD600 of 0.5, and GST-AP1190_251 expression was induced by addition of ImM IPTG. The GST-AP1190-251 bacterial pellet was harvested after three hours growth at 37°C, washed once with phosphate-buffered saline (PBS; pH 7.2) and lysed by two cycles of freeze-thawing. The cell lysate was resuspended in one-fiftieth of the culture volume in ice cold EB (2 mM EDTA, 2mM DTT, 1 mM PMSF, 5 μg/ml leupeptin, 7.5 μg/ml pepstatin, 1% aprotinin in PBS pH 7.2) with 2 mg/ml lysozyme and incubated on ice for 30 minutes. Triton X-100 was added to 1%, and the solution was sonicated mildly. The extract was clarified by two successive centrifugations of 1 and 15 minutes, respectively, at 13,000 x g in a microfuge.
The GST-AP1190_251 fusion protein was purified from the bacterial extract as follows. Glutathione-Sepharose beads (150 μl) , which had been pre-equilibrated in EB with 1% Triton X-100, were added to 1 ml of soluble extract in an Eppendorf tube and incubated on a rotating wheel for 60 minutes at 4°C. The beads were washed five times in 1 ml EB with 1% Triton X-100; resuspended in protein sample buffer and loaded on a preparative SDS-PAGE gel (Laemmli, Nature 227:680-685 (1970) , which is incorporated herein by reference) .
Following electrophoresis, the gel was stained for five minutes in 0.05% Coomassie R250 (Fisher Scientific, Pittsburgh, Pennsylvania) in distilled water and subsequently destained in distilled water. GST-AP1190_251 fusion protein was cut out of the gel and electroeluted in 0.5X transfer buffer for 3 hours at 100V as described in Harlow and Lane, supra , 1988. The GST-AP1190-251 fusion protein was emulsified with Freund's adjuvant and injected into rabbits by Immunodynamics (La Jolla, CA) .
Crude rabbit serum was used for western analysis at a dilution of 1 to 2000. Binding was detected using a secondary antibody coupled to peroxidase (Promega, Madison, WI; 1 to 2500 dilution) and revealed using an enhanced chemiluminesence kit (Amersham) .
Plant protein extracts for western analysis were prepared by homogenizing 100 μl plant tissue with 200 μl 2XFSB (Laemmli, supra , 1970) in a Kontes microfuge tube with a pistil. The extract was denatured in boiling water bath for 5 minutes, sonicated for 1 minute and clarified by two successive spins of 5 and 15 minutes in a microfuge at 13 '000 x g prior to electophoresis.
EXAMPLE VII
Cosuppression of API activity
This example demonstrates the use of cosuppression to inhibit endogenous API activity in Arabidopsis .
The full length API cDNA from pAM116 (see Example I) was inserted into the Eco RI site of pMON530, and the resulting construct was introduced into Agrobacterium strain ASE. Wild type Arabidopsis was transformed as described in Example I and analyzed for apl mutant phenotypes. In this way, a large number of independently generated cosuppressed lines were generated. Each of the cosuppressed lines had a phenotype similar or identical to apl -1 mutant plants, which lack API activity, indicating that the activity of both the introduced and endogenous copies of API was suppressed. Analysis of API expression levels by RNA in si tu hybridization demonstrated that API expression was reduced and delayed in the cosuppressed transgenic lines having the apl mutant phenotype. Futher ore, in a sa ll fraction of the cosuppressed transgenic lines, a enhanced phenotype resembling the cauliflower phenotype was observed. This enhanced phenotype indicated that introduction of an API construct can supress expression of both endogenous API and CAL.
Although the invention has been described with reference to the examples above, it should be understood that various modifications can be made without departing from the spirit of the invention. Accordingly, the invention is limited only by the following claims.
SEQUENCE LISTING
(1) GENERAL INFORMATION:
(i) APPLICANT: The Regents of the University of California
The Salk Institute for Biological Studies
(ii) TITLE OF INVENTION: Seed Plants Exhibiting Early Reproductive Development and Methods of Making Same
(iii) NUMBER OF SEQUENCES: 26
(iv) CORRESPONDENCE ADDRESS:
(A) ADDRESSEE: Campbell and Flores
(B) STREET: 4370 La Jolla Village Drive, Suite 700
(C) CITY: San Diego
(D) STATE: California
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(F) ZIP: 92122
(v) COMPUTER READABLE FORM:
(A) MEDIUM TYPE: Floppy disk
(B) COMPUTER: IBM PC compatible
(C) OPERATING SYSTEM: PC-DOS/MS-DOS
(D) SOFTWARE: Patentin Release #1.0, Version #1.25
(vi) CURRENT APPLICATION DATA:
(A) APPLICATION NUMBER:
(B) FILING DATE: 05-JUN-1996
(C) CLASSIFICATION:
(viii) ATTORNEY/AGENT INFORMATION:
(A) NAME: Campbell, Cathryn A.
(B) REGISTRATION NUMBER: 31,815
(C) REFERENCE/DOCKET NUMBER: FP-UD 2141
(ix) TELECOMMUNICATION INFORMATION:
(A) TELEPHONE: (619) 535-9001
(B) TELEFAX: (619) 535-8949
(2) INFORMATION FOR SEQ ID NO:1 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1057 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 124..893
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..1057
(D) OTHER INFORMATION: /note= "product = Arabidopsis thaliana API . "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1 : CTTTCCAATT GGTTCATACC AAAGTCTGAG CTCTTCTTTA TATCTCTCTT GTAGTTTCTT 60 ATTGGGGGTC TTTGTTTTGT TTGGTTCTTT TAGAGTAAGA AGTTTCTTAA AAAAGGATCA 120 AAA ATG GGA AGG GGT AGG GTT CAA TTG AAG AGG ATA GAG AAC AAG ATC 168 Met Gly Arg Gly Arg Val Gin Leu Lys Arg lie Glu Asn Lys lie 1 5 10 15
AAT AGA CAA GTG ACA TTC TCG AAA AGA AGA GCT GGT CTT TTG AAG AAA 216 Asn Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys 20 25 30
GCT CAT GAG ATC TCT GTT CTC TGT GAT GCT GAA GTT GCT CTT GTT GTC 264 Ala His Glu lie Ser Val Leu Cys Asp Ala Glu Val Ala Leu Val Val 35 40 45
TTC TCC CAT AAG GGG AAA CTC TTC GAA TAC TCC ACT GAT TCT TGT ATG 312 Phe Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Thr Asp Ser Cys Met 50 55 60
GAG AAG ATA CTT GAA CGC TAT GAG AGG TAC TCT TAC GCC GAA AGA CAG 360 Glu Lys He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin 65 70 75
CTT ATT GCA CCT GAG TCC GAC GTC AAT ACA AAC TGG TCG ATG GAG TAT 408 Leu He Ala Pro Glu Ser Asp Val Asn Thr Asn Trp Ser Met Glu Tyr 80 85 90 95
AAC AGG CTT AAG GCT AAG ATT GAG CTT TTG GAG AGA AAC CAG AGG CAT 456 Asn Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg His 100 105 110
TAT CTT GGG GAA GAC TTG CAA GCA ATG AGC CCT AAA GAG CTT CAG AAT 504 Tyr Leu Gly Glu Asp Leu Gin Ala Met Ser Pro Lys Glu Leu Gin Asn 115 120 125
CTG GAG CAG CAG CTT GAC ACT GCT CTT AAG CAC ATC CGC ACT AGA AAA 552 Leu Glu Gin Gin Leu Asp Thr Ala Leu Lys His He Arg Thr Arg Lys 130 135 140
AAC CAA CTT ATG TAC GAG TCC ATC AAT GAG CTC CAA AAA AAG GAG AAG 600 Asn Gin Leu Met Tyr Glu Ser He Asn Glu Leu Gin Lys Lys Glu Lys 145 150 155
GCC ATA CAG GAG CAA AAC AGC ATG CTT TCT AAA CAG ATC AAG GAG AGG 648 Ala He Gin Glu Gin Asn Ser Met Leu Ser Lys Gin He Lys Glu Arg 160 165 170 175
GAA AAA ATT CTT AGG GCT CAA CAG GAG CAG TGG GAT CAG CAG AAC CAA 696 Glu Lys He Leu Arg Ala Gin Gin Glu Gin Trp Asp Gin Gin Asn Gin 180 185 190
GGC CAC AAT ATG CCT CCC CCT CTG CCA CCG CAG CAG CAC CAA ATC CAG 744 Gly His Asn Met Pro Pro Pro Leu Pro Pro Gin Gin His Gin He Gin 195 200 205
CAT CCT TAC ATG CTC TCT CAT CAG CCA TCT CCT TTT CTC AAC ATG GGT 792 His Pro Tyr Met Leu Ser His Gin Pro Ser Pro Phe Leu Asn Met Gly 210 215 220
GGT CTG TAT CAA GAA GAT GAT CCA ATG GCA ATG AGG AGG AAT GAT CTC 840 Gly Leu Tyr Gin Glu Asp Asp Pro Met Ala Met Arg Arg Asn Asp Leu 225 230 235
GAA CTG ACT CTT GAA CCC GTT TAC AAC TGC AAC CTT GGC TGC TTC GCC 888 Glu Leu Thr Leu Glu Pro Val Tyr Asn Cys Asn Leu Gly Cys Phe Ala 240 245 250 255
GCA TG AAGCATTTCC ATATATATAT TTGTAATCGT CAACAATAAA AACAGTTTGC 943
Ala CACATACATA TAAATAGTGG CTAGGCTCTT TTCATCCAAT TAATATATTT TGGCAAATGT 1003 TCGATGTTCT TATATCATCA TATATAAATT AGCAGGCTCC TTTCTTTTTT TGTA 1057
(2) INFORMATION FOR SEQ ID NO:2:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 256 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:
Met Gly Arg Gly Arg Val Gin Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys Ala 20 25 30
His Glu He Ser Val Leu Cys Asp Ala Glu Val Ala Leu Val Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Thr Asp Ser Cys Met Glu 50 55 60
Lys He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu 65 70 75 80
He Ala Pro Glu Ser Asp Val Asn Thr Asn Trp Ser Met Glu Tyr Asn 85 90 95
Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg His Tyr 100 105 110
Leu Gly Glu Asp Leu Gin Ala Met Ser Pro Lys Glu Leu Gin Asn Leu 115 120 125
Glu Gin Gin Leu Asp Thr Ala Leu Lys His He Arg Thr Arg Lys Asn 130 135 140
Gin Leu Met Tyr Glu Ser He Asn Glu Leu Gin Lys Lys Glu Lys Ala 145 150 155 160
He Gin Glu Gin Asn Ser Met Leu Ser Lys Gin He Lys Glu Arg Glu 165 170 175
Lys He Leu Arg Ala Gin Gin Glu Gin Trp Asp Gin Gin Asn Gin Gly 180 185 190
His Asn Met Pro Pro Pro Leu Pro Pro Gin Gin His Gin He Gin His 195 200 205
Pro Tyr Met Leu Ser His Gin Pro Ser Pro Phe Leu Asn Met Gly Gly 210 215 220
Leu Tyr Gin Glu Asp Asp Pro Met Ala Met Arg Arg Asn Asp Leu Glu 225 230 235 240
Leu Thr Leu Glu Pro Val Tyr Asn Cys Asn Leu Gly Cys Phe Ala Ala 245 250 255 (2) INFORMATION FOR SEQ ID NO: :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 794 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: CDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 36..794
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..794
(D) OTHER INFORMATION: /note= "product = Brassica oleracea API . "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3:
TCTTAGAGGA AATAGTTCCT TTAAAAGGGA TAAAA ATG GGA AGG GGT AGG GTT 53
Met Gly Arg Gly Arg Val
1 5
CAG TTG AAG AGG ATA GAA AAC AAG ATC AAT AGA CAA GTG ACA TTC TCG 101 Gin Leu Lys Arg He Glu Asn Lys He Asn Arg Gin Val Thr Phe Ser 10 15 20
AAA AGA AGA GCT GGT CTT ATG AAG AAA GCT CAT GAG ATC TCT GTT CTG 149 Lys Arg Arg Ala Gly Leu Met Lys Lys Ala His Glu He Ser Val Leu 25 30 35
TGT GAT GCT GAA GTT GCG CTT GTT GTC TTC TCC CAT AAG GGG AAA CTC 197 Cys Asp Ala Glu Val Ala Leu Val Val Phe Ser His Lys Gly Lys Leu 40 45 50
TTT GAA TAC TCC ACT GAT TCT TGT ATG GAG AAG ATA CTT GAA CGC TAT 245 Phe Glu Tyr Ser Thr Asp Ser Cys Met Glu Lys He Leu Glu Arg Tyr 55 60 65 70
GAG AGA TAC TCT TAC GCC GAG AGA CAG CTT ATA GCA CCT GAG TCC GAC 293 Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu He Ala Pro Glu Ser Asp 75 80 85
TCC AAT ACG AAC TGG TCG ATG GAG TAT AAT AGG CTT AAG GCT AAG ATT 341 Ser Asn Thr Asn Trp Ser Met Glu Tyr Asn Arg Leu Lys Ala Lys He 90 95 100
GAG CTT TTG GAG AGA AAC CAG AGG CAC TAT CTT GGG GAA GAC TTG CAA 389 Glu Leu Leu Glu Arg Asn Gin Arg His Tyr Leu Gly Glu Asp Leu Gin 105 110 115
GCA ATG AGC CCT AAG GAA CTC CAG AAT CTA GAG CAA CAG CTT GAT ACT 437 Ala Met Ser Pro Lys Glu Leu Gin Asn Leu Glu Gin Gin Leu Asp Thr 120 125 130
GCT CTT AAG CAC ATC CGC TCT AGA AAA AAC CAA CTT ATG TAC GAC TCC 485 Ala Leu Lys His He Arg Ser Arg Lys Asn Gin Leu Met Tyr Asp Ser 135 140 145 150
ATC AAT GAG CTC CAA AGA AAG GAG AAA GCC ATA CAG GAA CAA AAC AGC 533 He Asn Glu Leu Gin Arg Lys Glu Lys Ala He Gin Glu Gin Asn Ser 155 160 165 ATG CTT TCC AAG CAG ATT AAG GAG AGG GAA AAC GTT CTT AGG GCG CAA 581 Met Leu Ser Lys Gin He Lys Glu Arg Glu Asn Val Leu Arg Ala Gin 170 175 180
CAA GAG CAA TGG GAC GAG CAG AAC CAT GGC CAT AAT ATG CCT CCG CCT 629 Gin Glu Gin Trp Asp Glu Gin Asn His Gly His Asn Met Pro Pro Pro 185 190 195
CCA CCC CCG CAG CAG CAT CAA ATC CAG CAT CCT TAC ATG CTC TCT CAT 677 Pro Pro Pro Gin Gin His Gin He Gin His Pro Tyr Met Leu Ser His 200 205 210
CAG CCA TCT CCT TTT CTC AAC ATG GGG GGG CTG TAT CAA GAA GAA GAT 725 Gin Pro Ser Pro Phe Leu Asn Met Gly Gly Leu Tyr Gin Glu Glu Asp 215 220 225 230
CAA ATG GCA ATG AGG AGG AAC GAT CTC GAT CTG TCT CTT GAA CCC GGT 773 Gin Met Ala Met Arg Arg Asn Asp Leu Asp Leu Ser Leu Glu Pro Gly 235 240 245
TAT AAC TGC AAT CTC GGC TGC 794
Tyr Asn Cys Asn Leu Gly Cys 250
(2) INFORMATION FOR SEQ ID NO:4 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 253 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:4 :
Met Gly Arg Gly Arg Val Gin Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Met Lys Lys Ala 20 25 30
His Glu He Ser Val Leu Cys Asp Ala Glu Val Ala Leu Val Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Thr Asp Ser Cys Met Glu 50 55 60
Lys He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu 65 70 75 80
He Ala Pro Glu Ser Asp Ser Asn Thr Asn Trp Ser Met Glu Tyr Asn 85 90 95
Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg His Tyr 100 105 110
Leu Gly Glu Asp Leu Gin Ala Met Ser Pro Lys Glu Leu Gin Asn Leu 115 120 125
Glu Gin Gin Leu Asp Thr Ala Leu Lys His He Arg Ser Arg Lys Asn 130 135 140
Gin Leu Met Tyr Asp Ser He Asn Glu Leu Gin Arg Lys Glu Lys Ala 145 150 155 160 He Gin Glu Gin Asn Ser Met Leu Ser Lys Gin He Lys Glu Arg Glu 165 170 175
Asn Val Leu Arg Ala Gin Gin Glu Gin Trp Asp Glu Gin Asn His Gly 180 185 190
His Asn Met Pro Pro Pro Pro Pro Pro Gin Gin His Gin He Gin His 195 200 205
Pro Tyr Met Leu Ser His Gin Pro Ser Pro Phe Leu Asn Met Gly Gly 210 215 220
Leu Tyr Gin Glu Glu Asp Gin Met Ala Met Arg Arg Asn Asp Leu Asp 225 230 235 240
Leu Ser Leu Glu Pro Gly Tyr Asn Cys Asn Leu Gly Cys 245 250
(2) INFORMATION FOR SEQ ID NO:5 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 768 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1..766
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..768
(D) OTHER INFORMATION: /note= "product = Brassica oleracea var. botrytis API."
(xi) SEQUENCE DESCRIPTION: SEQ ID N0:5:
ATG GGA AGG GGT AGG GTT CAG TTG AAG AGG ATA GAA AAC AAG ATC AAT 48 Met Gly Arg Gly Arg Val Gin Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
AGA CAA GTG ACA TTC TCG AAA AGA AGA GCT GGT CTT ATG AAG AAA GCT 96 Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Met Lys Lys Ala 20 25 30
CAT GAG ATC TCT GTT CTG TGT GAT GCT GAA GTT GCG CTT GTT GTC TTC 144 His Glu He Ser Val Leu Cys Asp Ala Glu Val Ala Leu Val Val Phe 35 40 45
TCC CAT AAG GGG AAA CTC TTT GAA TAC CCC ACT GAT TCT TGT ATG GAG 192 Ser His Lys Gly Lys Leu Phe Glu Tyr Pro Thr Asp Ser Cys Met Glu 50 55 60
GAG ATA CTT GAA CGC TAT GAG AGA TAC TCT TAC GCC GAG AGA CAG CTT 240 Glu He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu 65 70 75 80
ATA GCA CCT GAG TCC GAC TCC AAT ACG AAC TGG TCG ATG GAG TAT AAT 288 He Ala Pro Glu Ser Asp Ser Asn Thr Asn Trp Ser Met Glu Tyr Asn 85 90 95 AGG CTT AAG GCT AAG ATT GAG CTT TTG GAG AGA AAC CAG AGG CAC TAT 336 Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg His Tyr 100 105 110
CTT GGG GAA GAC TTG CAA GCA ATG AGC CCT AAG GAA CTC CAG AAT CTA 384 Leu Gly Glu Asp Leu Gin Ala Met Ser Pro Lys Glu Leu Gin Asn Leu 115 120 125
GAG CAA CAG CTT GAT ACT GCT CTT AAG CAC ATC CGC TCT AGA AAA AAC 432 Glu Gin Gin Leu Asp Thr Ala Leu Lys His He Arg Ser Arg Lys Asn 130 135 140
CAA CTT ATG TAC GAC TCC ATC AAT GAG CTC CAA AGA AAG GAG AAA GCC 480 Gin Leu Met Tyr Asp Ser He Asn Glu Leu Gin Arg Lys Glu Lys Ala 145 150 155 160
ATA CAG GAA CAA AAC AGC ATG CTT TCC AAG CAG ATT AAG GAG AGG GAA 528 He Gin Glu Gin Asn Ser Met Leu Ser Lys Gin He Lys Glu Arg Glu 165 170 175
AAC GTT CTT AGG GCG CAA CAA GAG CAA TGG GAC GAG CAG AAC CAT GGC 576 Asn Val Leu Arg Ala Gin Gin Glu Gin Trp Asp Glu Gin Asn His Gly 180 185 190
CAT AAT ATG CCT CCG CCT CCA CCC CCG CAG CAG CAT CAA ATC CAG CAT 624 His Asn Met Pro Pro Pro Pro Pro Pro Gin Gin His Gin He Gin His 195 200 205
CCT TAC ATG CTC TCT CAT CAG CCA TCT CCT TTT CTC AAC ATG GGA GGG 672 Pro Tyr Met Leu Ser His Gin Pro Ser Pro Phe Leu Asn Met Gly Gly 210 215 220
CTG TAT CAA GAA GAA GAT CAA ATG GCA ATG AGG AGG AAC GAT CTC GAT 720 Leu Tyr Gin Glu Glu Asp Gin Met Ala Met Arg Arg Asn Asp Leu Asp 225 230 235 240
CTG TCT CTT GAA CCC GTT TAC AAC TGC AAC CTT GGC CGT CGC TGC T 766
Leu Ser Leu Glu Pro Val Tyr Asn Cys Asn Leu Gly Arg Arg Cys 245 250 255
GA 768
(2) INFORMATION FOR SEQ ID NO:6 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 255 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:6:
Met Gly Arg Gly Arg Val Gin Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Met Lys Lys Ala 20 25 30
His Glu He Ser Val Leu Cys Asp Ala Glu Val Ala Leu Val Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Pro Thr Asp Ser Cys Met Glu 50 55 60 Glu He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu 65 70 75 80
He Ala Pro Glu Ser Asp Ser Asn Thr Asn Trp Ser Met Glu Tyr Asn 85 90 95
Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg His Tyr 100 105 110
Leu Gly Glu Asp Leu Gin Ala Met Ser Pro Lys Glu Leu Gin Asn Leu 115 120 125
Glu Gin Gin Leu Asp Thr Ala Leu Lys His He Arg Ser Arg Lys Asn 130 135 140
Gin Leu Met Tyr Asp Ser He Asn Glu Leu Gin Arg Lys Glu Lys Ala 145 150 155 160
He Gin Glu Gin Asn Ser Met Leu Ser Lys Gin He Lys Glu Arg Glu 165 170 175
Asn Val Leu Arg Ala Gin Gin Glu Gin Trp Asp Glu Gin Asn His Gly 180 185 190
His Asn Met Pro Pro Pro Pro Pro Pro Gin Gin His Gin He Gin His 195 200 205
Pro Tyr Met Leu Ser His Gin Pro Ser Pro Phe Leu Asn Met Gly Gly 210 215 220
Leu Tyr Gin Glu Glu Asp Gin Met Ala Met Arg Arg Asn Asp Leu Asp 225 230 235 240
Leu Ser Leu Glu Pro Val Tyr Asn Cys Asn Leu Gly Arg Arg Cys 245 250 255
(2) INFORMATION FOR SEQ ID NO:7:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1345 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 149..968
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..1345
(D) OTHER INFORMATION: /note= "product = Zea mays API."
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:7 :
GCACGAGTCC TCCTCCTCCT CGCATCCCAC CCCACCCCAC CTTCTCCTTA AAGCTACCTG 60
CCTACCCGGC GGTTGCGCGC CGCAATCGAT CGACCGGAAG AGAAAGAGCA GCTAGCTAGC 120
TAGCAGATCG GAGCACGGCA ACAAGGCG ATG GGG CGC GGC AAG GTA CAG CTG 172
Met Gly Arg Gly Lys Val Gin Leu 1 5 AAG CGG ATA GAG AAC AAG ATA AAC CGG CAG GTG ACC TTC TCC AAG CGC 220 Lys Arg He Glu Asn Lys He Asn Arg Gin Val Thr Phe Ser Lys Arg 10 15 20
CGG AAC GGC CTG CTC AAG AAG GCG CAC GAG ATC TCC GTC CTC TGC GAT 268 Arg Asn Gly Leu Leu Lys Lys Ala His Glu He Ser Val Leu Cys Asp 25 30 35 40
GCC GAG GTC GCC GTC ATC GTC TTC TCC CCC AAG GGC AAG CTC TAC GAG 316 Ala Glu Val Ala Val He Val Phe Ser Pro Lys Gly Lys Leu Tyr Glu 45 50 55
TAC GCC ACC GAC TCC CGC ATG GAC AAA ATT CTT GAA CGC TAT GAG CGA 364 Tyr Ala Thr Asp Ser Arg Met Asp Lys He Leu Glu Arg Tyr Glu Arg 60 65 70
TAT TCC TAT GCT GAA AAG GCT CTT ATT TCA GCT GAA TCT GAA AGT GAG 412 Tyr Ser Tyr Ala Glu Lys Ala Leu He Ser Ala Glu Ser Glu Ser Glu 75 80 85
GGA AAT TGG TGC CAC GAA TAC AGG AAA CTG AAG GCC AAA ATT GAG ACC 460 Gly Asn Trp Cyβ His Glu Tyr Arg Lys Leu Lys Ala Lys He Glu Thr 90 95 100
ATA CAA AAA TGC CAC AAG CAC CTG ATG GGA GAG GAT CTA GAG TCT TTG 508 He Gin Lys Cys His Lys His Leu Met Gly Glu Asp Leu Glu Ser Leu 105 110 115 120
AAT CCC AAA GAG CTC CAG CAA CTA GAG CAG CAG CTG GAT AGC TCA CTG 556 Asn Pro Lys Glu Leu Gin Gin Leu Glu Gin Gin Leu Asp Ser Ser Leu 125 130 135
AAG CAC ATC AGA TCA AGG AAG AGC CAC CTT ATG GCC GAG TCT ATT TCT 604 Lys His He Arg Ser Arg Lys Ser His Leu Met Ala Glu Ser He Ser 140 145 150
GAG CTA CAG AAG AAG GAG AGG TCA CTG CAG GAG GAG AAC AAG GCT CTG 652 Glu Leu Gin Lys Lys Glu Arg Ser Leu Gin Glu Glu Asn Lys Ala Leu 155 160 165
CAG AAG GAA CTT GCG GAG AGG CAG AAG GCC GTC GCG AGC CGG CAG CAG 700 Gin Lys Glu Leu Ala Glu Arg Gin Lys Ala Val Ala Ser Arg Gin Gin 170 175 180
CAG CAA CAG CAG CAG GTG CAG TGG GAC CAG CAG ACA CAT GCC CAG GCC 748 Gin Gin Gin Gin Gin Val Gin Trp Asp Gin Gin Thr His Ala Gin Ala 185 190 195 200
CAG ACA AGC TCA TCA TCG TCC TCC TTC ATG ATG AGG CAG GAT CAG CAG 796 Gin Thr Ser Ser Ser Ser Ser Ser Phe Met Met Arg Gin Asp Gin Gin 205 210 215
GGA CTG CCG CCT CCA CAC AAC ATC TGC TTC CCG CCG TTG ACA ATG GGA 844 Gly Leu Pro Pro Pro His Asn He Cys Phe Pro Pro Leu Thr Met Gly 220 225 230
GAT AGA GGT GAA GAG CTG GCT GCG GCG GCG GCG GCG CAG CAG CAG CAG 892 Asp Arg Gly Glu Glu Leu Ala Ala Ala Ala Ala Ala Gin Gin Gin Gin 235 240 245
CCA CTG CCG GGG CAG GCG CAA CCG CAG CTC CGC ATC GCA GGT CTG CCA 940 Pro Leu Pro Gly Gin Ala Gin Pro Gin Leu Arg He Ala Gly Leu Pro 250 255 260
CCA TGG ATG CTG AGC CAC CTC AAT GCA T AAGGAGAGGG TCGATGAACA 988
Pro Trp Met Leu Ser His Leu Asn Ala 265 270 CATCGACCTC CTCTCTCTCT CTCTCTCGTC ATGGATCATG ACGTACGCGT ACCATATGGT 1048
TGCTGTGCCT GCCCCCATCG ATCGCGAGCA ATGGCACGCT CATGCAAGTG ATCATTGCTC 1108
CCCGTTGGTT AAACCCTAGC CTATGTTCAT GGCGTCAGCA ACTAAGCTAA ACTATTGTTA 1168
TGTTTGCAAG AAAGGGTAAA CCCGCTAGCT GTGTAATCTT GTCCAGCTAT CAGTATGCTT 1228
GTTACTGCCC AGTTACCCTT GAATCTAGCG GCGCTTTTGG TGAGAGGGTG CAGTTTACTT 1288
TAAACATGGT TCGTGACTTG CTGTAAATAG TAGTATTAAT CGATTTGGGC ATCTAAA 1345
(2) INFORMATION FOR SEQ ID NO:8 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 273 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:8 :
Met Gly Arg Gly Lys Val Gin Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Asn Gly Leu Leu Lys Lys Ala 20 25 30
His Glu He Ser Val Leu Cys Asp Ala Glu Val Ala Val He Val Phe 35 40 45
Ser Pro Lys Gly Lys Leu Tyr Glu Tyr Ala Thr Asp Ser Arg Met Asp 50 55 60
Lys He Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Ala Leu 65 70 75 80
He Ser Ala Glu Ser Glu Ser Glu Gly Asn Trp Cys His Glu Tyr Arg 85 90 95
Lys Leu Lys Ala Lys He Glu Thr He Gin Lys Cys His Lys His Leu 100 105 110
Met Gly Glu Asp Leu Glu Ser Leu Asn Pro Lys Glu Leu Gin Gin Leu 115 120 125
Glu Gin Gin Leu Asp Ser Ser Leu Lys His He Arg Ser Arg Lys Ser 130 135 140
His Leu Met Ala Glu Ser He Ser Glu Leu Gin Lys Lys Glu Arg Ser 145 150 155 160
Leu Gin Glu Glu Asn Lys Ala Leu Gin Lys Glu Leu Ala Glu Arg Gin 165 170 175
Lys Ala Val Ala Ser Arg Gin Gin Gin Gin Gin Gin Gin Val Gin Trp 180 185 190
Asp Gin Gin Thr His Ala Gin Ala Gin Thr Ser Ser Ser Ser Ser Ser 195 200 205
Phe Met Met Arg Gin Asp Gin Gin Gly Leu Pro Pro Pro His Asn He 210 215 220 Cys Phe Pro Pro Leu Thr Met Gly Asp Arg Gly Glu Glu Leu Ala Ala 225 230 235 240
Ala Ala Ala Ala Gin Gin Gin Gin Pro Leu Pro Gly Gin Ala Gin Pro 245 250 255
Gin Leu Arg He Ala Gly Leu Pro Pro Trp Met Leu Ser His Leu Asn 260 265 270
Ala
(2) INFORMATION FOR SEQ ID NO:9:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 779 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 10..775
(ix) FEATURE:
(A) NAME/KEY: unsure
(B) LOCATION: 778. -779
(D) OTHER INFORMATION: /note= "N = one or more nucleotides . "
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..779
(D) OTHER INFORMATION: /note= "product = Arabidopsis thaliana CAL. "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:9 :
TTAAGAGAA ATG GGA AGG GGT AGG GTT GAA TTG AAG AGG ATA GAG AAC 48
Met Gly Arg Gly Arg Val Glu Leu Lys Arg He Glu Asn 1 5 10
AAG ATC AAT AGA CAA GTG ACA TTC TCG AAA AGA AGA ACT GGT CTT TTG 96 Lys He Asn Arg Gin Val Thr Phe Ser Lys Arg Arg Thr Gly Leu Leu 15 20 25
AAG AAA GCT CAG GAG ATC TCT GTT CTT TGT GAT GCC GAG GTT TCC CTT 144 Lys Lys Ala Gin Glu He Ser Val Leu Cys Asp Ala Glu Val Ser Leu 30 35 40 45
ATT GTC TTC TCC CAT AAG GGC AAA TTG TTC GAG TAC TCC TCT GAA TCT 192 He Val Phe Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser 50 55 60
TGC ATG GAG AAG GTA CTA GAA CGC TAC GAG AGG TAT TCT TAC GCC GAG 240 Cys Met Glu Lys Val Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu 65 70 75
AGA CAG CTG ATT GCA CCT GAC TCT CAC GTT AAT GCA CAG ACG AAC TGG 288 Arg Gin Leu He Ala Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp 80 85 90 TCA ATG GAG TAT AGC AGG CTT AAG GCC AAG ATT GAG CTT TTG GAG AGA 336 Ser Met Glu Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg 95 100 105
AAC CAA AGG CAT TAT CTG GGA GAA GAG TTG GAA CCA ATG AGC CTC AAG 384 Asn Gin Arg His Tyr Leu Gly Glu Glu Leu Glu Pro Met Ser Leu Lys 110 115 120 125
GAT CTC CAA AAT CTG GAG CAG CAG CTT GAG ACT GCT CTT AAG CAC ATT 432 Asp Leu Gin Asn Leu Glu Gin Gin Leu Glu Thr Ala Leu Lys His He 130 135 140
CGC TCC AGA AAA AAT CAA CTC ATG AAT GAG TCC CTC AAC CAC CTC CAA 480 Arg Ser Arg Lys Asn Gin Leu Met Asn Glu Ser Leu Asn His Leu Gin 145 150 155
AGA AAG GAG AAG GAG ATA CAG GAG GAA AAC AGC ATG CTT ACC AAA CAG 528 Arg Lys Glu Lys Glu He Gin Glu Glu Asn Ser Met Leu Thr Lys Gin 160 165 170
ATA AAG GAG AGG GAA AAC ATC CTA AAG ACA AAA CAA ACC CAA TGT GAG 576 He Lys Glu Arg Glu Asn He Leu Lys Thr Lys Gin Thr Gin Cys Glu 175 180 185
CAG CTG AAC CGC AGC GTC GAC GAT GTA CCA CAG CCA CAA CCA TTT CAA 624 Gin Leu Asn Arg Ser Val Asp Asp Val Pro Gin Pro Gin Pro Phe Gin 190 195 200 205
CAC CCC CAT CTT TAC ATG ATC GCT CAT CAG ACT TCT CCT TTC CTA AAT 672 His Pro His Leu Tyr Met He Ala His Gin Thr Ser Pro Phe Leu Asn 210 215 220
ATG GGT GGT TTG TAC CAA GGA GAA GAC CAA ACG GCG ATG AGG AGG AAC 7 0 Met Gly Gly Leu Tyr Gin Gly Glu Asp Gin Thr Ala Met Arg Arg Asn 225 230 235
AAT CTG GAT CTG ACT CTT GAA CCC ATT TAC AAT TAC CTT GGC TGT TAC 768 Asn Leu Asp Leu Thr Leu Glu Pro He Tyr Asn Tyr Leu Gly Cys Tyr 240 245 250
GCC GCT T GANN 779
Ala Ala 255
(2) INFORMATION FOR SEQ ID NO:10:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 255 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:10:
Met Gly Arg Gly Arg Val Glu Leu Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Thr Gly Leu Leu Lys Lys Ala 20 25 30
Gin Glu He Ser Val Leu Cys Asp Ala Glu Val Ser Leu He Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser Cys Met Glu 50 55 60 Lys Val Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Arg Gin Leu 65 70 75 80
He Ala Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp Ser Met Glu 85 90 95
Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg 100 105 110
His Tyr Leu Gly Glu Glu Leu Glu Pro Met Ser Leu Lys Asp Leu Gin 115 120 125
Asn Leu Glu Gin Gin Leu Glu Thr Ala Leu Lys His He Arg Ser Arg 130 135 140
Lys Asn Gin Leu Met Asn Glu Ser Leu Asn His Leu Gin Arg Lys Glu 145 150 155 160
Lys Glu He Gin Glu Glu Asn Ser Met Leu Thr Lys Gin He Lys Glu 165 170 175
Arg Glu Asn He Leu Lys Thr Lys Gin Thr Gin Cys Glu Gin Leu Asn 180 185 190
Arg Ser Val Asp Asp Val Pro Gin Pro Gin Pro Phe Gin His Pro His 195 200 205
Leu Tyr Met He Ala His Gin Thr Ser Pro Phe Leu Asn Met Gly Gly 210 215 220
Leu Tyr Gin Gly Glu Asp Gin Thr Ala Met Arg Arg Asn Asn Leu Asp 225 230 235 240
Leu Thr Leu Glu Pro He Tyr Asn Tyr Leu Gly Cys Tyr Ala Ala 245 250 255
(2) INFORMATION FOR SEQ ID NO:11:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 756 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1..754
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..756
(D) OTHER INFORMATION: /note= "product = Brassica oleracea CAL. "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:11:
ATG GGA AGG GGT AGG GTT GAA ATG AAG AGG ATA GAG AAC AAG ATC AAC 48 Met Gly Arg Gly Arg Val Glu Met Lys Arg He Glu Asn Lys He Asn 1 5 10 15
CGA CAA GTG ACG TTT TCG AAA AGA AGA GCT GGT CTT TTG AAG AAA GCC 96 Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys Ala 20 25 30 CAT GAG ATC TCG ATC CTT TGT GAT GCT GAG GTT TCC CTT ATT GTC TTC 144 His Glu He Ser He Leu Cys Asp Ala Glu Val Ser Leu He Val Phe 35 40 45
TCC CAT AAG GGG AAA CTG TTC GAG TAC TCG TCT GAA TCT TGC ATG GAG 192 Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser Cys Met Glu 50 55 60
AAG GTA CTA GAA CAC TAC GAG AGG TAC TCT TAC GCC GAG AAA CAG CTA 240 Lys Val Leu Glu His Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Gin Leu 65 70 75 80
AAA GTT CCA GAC TCT CAC GTC AAT GCA CAA ACG AAC TGG TCA GTG GAA 288 Lys Val Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp Ser Val Glu 85 90 95
TAT AGC AGG CTT AAG GCT AAG ATT GAG CTT TTG GAG AGA AAC CAA AGG 336 Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg 100 105 110
CAT TAT CTG GGC GAA GAT TTA GAA TCA ATC AGC ATA AAG GAG CTA CAG 384 His Tyr Leu Gly Glu Asp Leu Glu Ser He Ser He Lys Glu Leu Gin 115 120 125
AAT CTG GAG CAG CAG CTT GAC ACT TCT CTT AAA CAT ATT CGC TCG AGA 432 Asn Leu Glu Gin Gin Leu Asp Thr Ser Leu Lys His He Arg Ser Arg 130 135 140
AAA AAT CAA CTA ATG CAC GAG TCC CTC AAC CAC CTC CAA AGA AAG GAG 480 Lys Asn Gin Leu Met His Glu Ser Leu Asn His Leu Gin Arg Lys Glu 145 150 155 160
AAA GAA ATA CTG GAG GAA AAC AGC ATG CTT GCC AAA CAG ATA AGG GAG 528 Lys Glu He Leu Glu Glu Asn Ser Met Leu Ala Lys Gin He Arg Glu 165 170 175
AGG GAG AGT ATC CTA AGG ACA CAT CAA AAC CAA TCA GAG CAG CAA AAC 576 Arg Glu Ser He Leu Arg Thr His Gin Asn Gin Ser Glu Gin Gin Asn 180 185 190
CGC AGC CAC CAT GTA GCT CCT CAG CCG CAA CCG CAG TTA AAT CCT TAC 624 Arg Ser His His Val Ala Pro Gin Pro Gin Pro Gin Leu Asn Pro Tyr 195 200 205
ATG GCA TCA TCT CCT TTC CTA AAT ATG GGT GGC ATG TAC CAA GGA GAA 672 Met Ala Ser Ser Pro Phe Leu Asn Met Gly Gly Met Tyr Gin Gly Glu 210 215 220
TAT CCA ACG GCG GTG AGG AGG AAC CGT CTC GAT CTG ACT CTT GAA CCC 720 Tyr Pro Thr Ala Val Arg Arg Asn Arg Leu Asp Leu Thr Leu Glu Pro 225 230 235 240
ATT TAC AAC TGC AAC CTT GGT TAC TTT GCC GCA T GA 756
He Tyr Asn Cys Asn Leu Gly Tyr Phe Ala Ala 245 250
(2) INFORMATION FOR SEQ ID NO:12:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 251 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:12:
Met Gly Arg Gly Arg Val Glu Met Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys Ala 20 25 30
His Glu He Ser He Leu Cys Asp Ala Glu Val Ser Leu He Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser Cys Met Glu 50 55 60
Lys Val Leu Glu His Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Gin Leu 65 70 75 80
Lys Val Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp Ser Val Glu 85 90 95
Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Leu Glu Arg Asn Gin Arg 100 105 110
His Tyr Leu Gly Glu Asp Leu Glu Ser He Ser He Lys Glu Leu Gin 115 120 125
Asn Leu Glu Gin Gin Leu Asp Thr Ser Leu Lys His He Arg Ser Arg 130 135 140
Lys Asn Gin Leu Met His Glu Ser Leu Asn His Leu Gin Arg Lys Glu 145 150 155 160
Lys Glu He Leu Glu Glu Asn Ser Met Leu Ala Lys Gin He Arg Glu 165 170 175
Arg Glu Ser He Leu Arg Thr His Gin Asn Gin Ser Glu Gin Gin Asn 180 185 190
Arg Ser His His Val Ala Pro Gin Pro Gin Pro Gin Leu Asn Pro Tyr 195 200 205
Met Ala Ser Ser Pro Phe Leu Asn Met Gly Gly Met Tyr Gin Gly Glu 210 215 220
Tyr Pro Thr Ala Val Arg Arg Asn Arg Leu Asp Leu Thr Leu Glu Pro 225 230 235 240
He Tyr Asn Cys Asn Leu Gly Tyr Phe Ala Ala 245 250
(2) INFORMATION FOR SEQ ID NO: 13:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 756 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1..451 ( ix ) FEATURE :
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..756
(D) OTHER INFORMATION: /note= "product = Brassica oleracea var. botrytis CAL."
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:13:
ATG GGA AGG GGT AGG GTT GAA ATG AAG AGG ATA GAG AAC AAG ATC AAC 48 Met Gly Arg Gly Arg Val Glu Met Lys Arg He Glu Asn Lys He Asn 1 5 10 15
AGA CAA GTG ACG TTT TCG AAA AGA AGA GCT GGT CTT TTG AAG AAA GCC 96 Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys Ala 20 25 30
CAT GAG ATC TCG ATT CTT TGT GAT GCT GAG GTT TCC CTT ATT GTC TTC 144 His Glu He Ser He Leu Cys Asp Ala Glu Val Ser Leu He Val Phe 35 40 45
TCC CAT AAG GGG AAA CTG TTC GAG TAC TCG TCT GAA TCT TGC ATG GAG 192 Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser Cys Met Glu 50 55 60
AAG GTA CTA GAA CGC TAC GAG AGG TAC TCT TAC GCC GAG AAA CAG CTA 240 Lys Val Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Gin Leu 65 70 75 80
AAA GCT CCA GAC TCT CAC GTC AAT GCA CAA ACG AAC TGG TCA ATG GAA 288 Lys Ala Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp Ser Met Glu 85 90 95
TAT AGC AGG CTT AAG GCT AAG ATT GAG CTT TGG GAG AGG AAC CAA AGG 336 Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Trp Glu Arg Asn Gin Arg 100 105 110
CAT TAT CTG GGA GAA GAT TTA GAA TCA ATC AGC ATA AAG GAG CTA CAG 384 His Tyr Leu Gly Glu Asp Leu Glu Ser He Ser He Lys Glu Leu Gin 115 120 125
AAT CTG GAG CAG CAG CTT GAC ACT TCT CTT AAA CAT ATT CGC TCC AGA 432 Asn Leu Glu Gin Gin Leu Asp Thr Ser Leu Lys His He Arg Ser Arg 130 135 140
AAA AAT CAA CTA ATG CAC T AGTCCCTCAA CCACCTCCAA AGAAAGGAGA 481
Lys Asn Gin Leu Met His 145 150
AAGAAATACT GGAGGAAAAC AGCATGCTTG CCAAACAGAT AAAGGAGAGG GAGAGTATCC 541
TAAGGACACA TCAAAACCAA TCAGAGCAGC AAAACCGCAG CCACCATGTA GCTCCTCAGC 601
CGCAACCGCA GTTAAATCCT TACATGGCAT CATCTCCTTT CCTAAATATG GGTGGCATGT 661
ACCAAGGAGA ATATCCAACG GCGGTGAGGA GGAACCGTCT CGATCTGACT CTTGAACCCA 721
TTTACAACTG CAACCTTGGT TACTTTGCCG CATGA 756
(2) INFORMATION FOR SEQ ID NO:14 :
(i) SEQUENCE CHARACTE ISTICS :
(A) LENGTH: 150 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:14 :
Met Gly Arg Gly Arg Val Glu Met Lys Arg He Glu Asn Lys He Asn 1 5 10 15
Arg Gin Val Thr Phe Ser Lys Arg Arg Ala Gly Leu Leu Lys Lys Ala 20 25 30
His Glu He Ser He Leu Cys Asp Ala Glu Val Ser Leu He Val Phe 35 40 45
Ser His Lys Gly Lys Leu Phe Glu Tyr Ser Ser Glu Ser Cys Met Glu 50 55 60
Lys Val Leu Glu Arg Tyr Glu Arg Tyr Ser Tyr Ala Glu Lys Gin Leu 65 70 75 80
Lys Ala Pro Asp Ser His Val Asn Ala Gin Thr Asn Trp Ser Met Glu 85 90 95
Tyr Ser Arg Leu Lys Ala Lys He Glu Leu Trp Glu Arg Asn Gin Arg 100 105 110
His Tyr Leu Gly Glu Asp Leu Glu Ser He Ser He Lys Glu Leu Gin 115 120 125
Asn Leu Glu Gin Gin Leu Asp Thr Ser Leu Lys His He Arg Ser Arg 130 135 140
Lys Asn Gin Leu Met His 145 150
(2) INFORMATION FOR SEQ ID NO:15:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1500 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 72..1343
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..1500
(D) OTHER INFORMATION: /note= "product = Arabidopsis thaliana LEAFY (LFY) . "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:15:
AAAGCAATCT GCTCAAAAGA GTAAAGAAAG AGAGAAAAAG AGAGTGATAG AGAGAGAGAG 60
AAAAATAGAT T ATG GAT CCT GAA GGT TTC ACG AGT GGC TTA TTC CGG TGG 110 Met Asp Pro Glu Gly Phe Thr Ser Gly Leu Phe Arg Trp 1 5 10
AAC CCA ACG AGA GCA TTG GTT CAA GCA CCA CCT CCG GTT CCA CCT CCG 158 Asn Pro Thr Arg Ala Leu Val Gin Ala Pro Pro Pro Val Pro Pro Pro
15 20 25 CTG CAG CAA CAG CCG GTG ACA CCG CAG ACG GCT GCT TTT GGG ATG CGA 206 Leu Gin Gin Gin Pro Val Thr Pro Gin Thr Ala Ala Phe Gly Met Arg 30 35 40 45
CTT GGT GGT TTA GAG GGA CTA TTC GGT CCA TAC GGT ATA CGT TTC TAC 254 Leu Gly Gly Leu Glu Gly Leu Phe Gly Pro Tyr Gly He Arg Phe Tyr 50 55 60
ACG GCG GCG AAG ATA GCG GAG TTA GGT TTT ACG GCG AGC ACG CTT GTG 302 Thr Ala Ala Lys He Ala Glu Leu Gly Phe Thr Ala Ser Thr Leu Val 65 70 75
GGT ATG AAG GAC GAG GAG CTT GAA GAG ATG ATG AAT AGT CTC TCT CAT 350 Gly Met Lys Asp Glu Glu Leu Glu Glu Met Met Asn Ser Leu Ser His 80 85 90
ATC TTT CGT TGG GAG CTT CTT GTT GGT GAA CGG TAC GGT ATC AAA GCT 398 He Phe Arg Trp Glu Leu Leu Val Gly Glu Arg Tyr Gly He Lys Ala 95 100 105
GCC GTT AGA GCT GAA CGG AGA CGA TTG CAA GAA GAG GAG GAA GAG GAA 446 Ala Val Arg Ala Glu Arg Arg Arg Leu Gin Glu Glu Glu Glu Glu Glu 110 115 120 125
TCT TCT AGA CGC CGT CAT TTG CTA CTC TCC GCC GCT GGT GAT TCC GGT 494 Ser Ser Arg Arg Arg His Leu Leu Leu Ser Ala Ala Gly Asp Ser Gly 130 135 140
ACT CAT CAC GCT CTT GAT GCT CTC TCC CAA GAA GAT GAT TGG ACA GGG 542 Thr His His Ala Leu Asp Ala Leu Ser Gin Glu Asp Asp Trp Thr Gly 145 150 155
TTA TCT GAG GAA CCG GTG CAG CAA CAA GAC CAG ACT GAT GCG GCG GGG 590 Leu Ser Glu Glu Pro Val Gin Gin Gin Asp Gin Thr Asp Ala Ala Gly 160 165 170
AAT AAC GGC GGA GGA GGA AGT GGT TAC TGG GAC GCA GGT CAA GGA AAG 638 Asn Asn Gly Gly Gly Gly Ser Gly Tyr Trp Asp Ala Gly Gin Gly Lys 175 180 185
ATG AAG AAG CAA CAG CAG CAG AGA CGG AGA AAG AAA CCA ATG CTG ACG 686 Met Lys Lys Gin Gin Gin Gin Arg Arg Arg Lys Lys Pro Met Leu Thr 190 195 200 205
TCA GTG GAA ACC GAC GAA GAC GTC AAC GAA GGT GAG GAT GAC GAC GGG 734 Ser Val Glu Thr Asp Glu Asp Val Asn Glu Gly Glu Asp Asp Asp Gly 210 215 220
ATG GAT AAC GGC AAC GGA GGT AGT GGT TTG GGG ACA GAG AGA CAG AGG 782 Met Asp Asn Gly Asn Gly Gly Ser Gly Leu Gly Thr Glu Arg Gin Arg 225 230 235
GAG CAT CCG TTT ATC GTA ACG GAG CCT GGG GAA GTG GCA CGT GGC AAA 830 Glu His Pro Phe He Val Thr Glu Pro Gly Glu Val Ala Arg Gly Lys 240 245 250
AAG AAC GGC TTA GAT TAT CTG TTC CAC TTG TAC GAA CAA TGC CGT GAG 878 Lys Asn Gly Leu Asp Tyr Leu Phe His Leu Tyr Glu Gin Cys Arg Glu 255 260 265
TTC CTT CTT CAG GTC CAG ACA ATT GCT AAA GAC CGT GGC GAA AAA TGC 926 Phe Leu Leu Gin Val Gin Thr He Ala Lys Asp Arg Gly Glu Lys Cys 270 275 280 285
CCC ACC AAG GTG ACG AAC CAA GTA TTC AGG TAC GCG AAG AAA TCA GGA 974 Pro Thr Lys Val Thr Asn Gin Val Phe Arg Tyr Ala Lys Lys Ser Gly 290 295 300 GCG AGT TAC ATA AAC AAG CCT AAA ATG CGA CAC TAC GTT CAC TGT TAC 1022 Ala Ser Tyr He Asn Lys Pro Lys Met Arg His Tyr Val His Cys Tyr 305 310 315
GCT CTC CAC TGC CTA GAC GAA GAA GCT TCA AAT GCT CTC AGA AGA GCG 1070 Ala Leu His Cys Leu Asp Glu Glu Ala Ser Asn Ala Leu Arg Arg Ala 320 325 330
TTT AAA GAA CGC GGT GAG AAC GTT GGC TCA TGG CGT CAG GCT TGT TAC 1118 Phe Lys Glu Arg Gly Glu Asn Val Gly Ser Trp Arg Gin Ala Cys Tyr 335 340 345
AAG CCA CTT GTG AAC ATC GCT TGT CGT CAT GGC TGG GAT ATA GAC GCC 1166 Lys Pro Leu Val Asn He Ala Cys Arg His Gly Trp Asp He Asp Ala 350 355 360 365
GTC TTT AAC GCT CAT CCT CGT CTC TCT ATT TGG TAT GTT CCA ACA AAG 1214 Val Phe Asn Ala His Pro Arg Leu Ser He Trp Tyr Val Pro Thr Lys 370 375 380
CTG CGT CAG CTT TGC CAT TTG GAG CGG AAC AAT GCG GTT GCT GCG GCT 1262 Leu Arg Gin Leu Cys His Leu Glu Arg Asn Asn Ala Val Ala Ala Ala 385 390 395
GCG GCT TTA GTT GGC GGT ATT AGC TGT ACC GGA TCG TCG ACG TCT GGA 1310 Ala Ala Leu Val Gly Gly He Ser Cys Thr Gly Ser Ser Thr Ser Gly 400 405 410
CGT GGT GGA TGC GGC GGC GAC GAC TTG CGT TTC TAGTTTGGTT TGGGTAGTTG 1363 Arg Gly Gly Cys Gly Gly Asp Asp Leu Arg Phe 415 420
TGGTTTGTTT AGTCGTTATC CTAATTAACT ATTAGTCTTT AATTTAGTCT TCTTGGCTAA 1423
TTTATTTTTC TTTTTTTGTC AAAACCTTTA ATTTGTTATG GCTAATTTGT TATACACGCA 1483
GTTTTCTTAA TGCGTTA 1500
(2) INFORMATION FOR SEQ ID NO:16 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 424 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:16:
Met Asp Pro Glu Gly Phe Thr Ser Gly Leu Phe Arg Trp Asn Pro Thr 1 5 10 15
Arg Ala Leu Val Gin Ala Pro Pro Pro Val Pro Pro Pro Leu Gin Gin 20 25 30
Gin Pro Val Thr Pro Gin Thr Ala Ala Phe Gly Met Arg Leu Gly Gly 35 40 45
Leu Glu Gly Leu Phe Gly Pro Tyr Gly He Arg Phe Tyr Thr Ala Ala 50 55 60
Lys He Ala Glu Leu Gly Phe Thr Ala Ser Thr Leu Val Gly Met Lys 65 70 75 80
Asp Glu Glu Leu Glu Glu Met Met Asn Ser Leu Ser His He Phe Arg 85 90 95 Trp Glu Leu Leu Val Gly Glu Arg Tyr Gly He Lys Ala Ala Val Arg 100 105 110
Ala Glu Arg Arg Arg Leu Gin Glu Glu Glu Glu Glu Glu Ser Ser Arg 115 120 125
Arg Arg His Leu Leu Leu Ser Ala Ala Gly Asp Ser Gly Thr His His 130 135 140
Ala Leu Asp Ala Leu Ser Gin Glu Asp Asp Trp Thr Gly Leu Ser Glu 145 150 155 160
Glu Pro Val Gin Gin Gin Asp Gin Thr Asp Ala Ala Gly Asn Asn Gly 165 170 175
Gly Gly Gly Ser Gly Tyr Trp Asp Ala Gly Gin Gly Lys Met Lys Lys 180 185 190
Gin Gin Gin Gin Arg Arg Arg Lys Lys Pro Met Leu Thr Ser Val Glu 195 200 205
Thr Asp Glu Asp Val Asn Glu Gly Glu Asp Asp Asp Gly Met Asp Asn 210 215 220
Gly Asn Gly Gly Ser Gly Leu Gly Thr Glu Arg Gin Arg Glu His Pro 225 230 235 240
Phe He Val Thr Glu Pro Gly Glu Val Ala Arg Gly Lys Lys Asn Gly 245 250 255
Leu Asp Tyr Leu Phe His Leu Tyr Glu Gin Cys Arg Glu Phe Leu Leu 260 265 270
Gin Val Gin Thr He Ala Lys Asp Arg Gly Glu Lys Cys Pro Thr Lys 275 280 285
Val Thr Asn Gin Val Phe Arg Tyr Ala Lys Lys Ser Gly Ala Ser Tyr 290 295 300
He Asn Lys Pro Lys Met Arg His Tyr Val His Cys Tyr Ala Leu His 305 310 315 320
Cys Leu Asp Glu Glu Ala Ser Asn Ala Leu Arg Arg Ala Phe Lys Glu 325 330 335
Arg Gly Glu Asn Val Gly Ser Trp Arg Gin Ala Cys Tyr Lys Pro Leu 340 345 350
Val Asn He Ala Cys Arg His Gly Trp Asp He Asp Ala Val Phe Asn 355 360 365
Ala His Pro Arg Leu Ser He Trp Tyr Val Pro Thr Lys Leu Arg Gin 370 375 380
Leu Cys His Leu Glu Arg Asn Asn Ala Val Ala Ala Ala Ala Ala Leu 385 390 395 400
Val Gly Gly He Ser Cys Thr Gly Ser Ser Thr Ser Gly Arg Gly Gly 405 410 415
Cys Gly Gly Asp Asp Leu Arg Phe 420 (2) INFORMATION FOR SEQ ID NO:17:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1656 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1..1651
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..1656
(D) OTHER INFORMATION: /note= "domain = ecdysone receptor ligand binding domain."
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:17:
ATG CGG CCG GAA TGC GTC GTC CCG GAG AAC CAA TGT GCG ATG AAG CGG 48 Met Arg Pro Glu Cys Val Val Pro Glu Asn Gin Cys Ala Met Lys Arg 1 5 10 15
CGC GAA AAG AAG GCC CAG AAG GAG AAG GAC AAA ATG ACC ACT TCG CCG 96 Arg Glu Lys Lys Ala Gin Lys Glu Lys Asp Lys Met Thr Thr Ser Pro 20 25 30
AGC TCT CAG CAT GGC GGC AAT GGC AGC TTG GCC TCT GGT GGC GGC CAA 144 Ser Ser Gin His Gly Gly Asn Gly Ser Leu Ala Ser Gly Gly Gly Gin 35 40 45
GAC TTT GTT AAG AAG GAG ATT CTT GAC CTT ATG ACA TGC GAG CCG CCC 192 Asp Phe Val Lys Lys Glu He Leu Asp Leu Met Thr Cys Glu Pro Pro 50 55 60
CAG CAT GCC ACT ATT CCG CTA CTA CCT GAT GAA ATA TTG GCC AAG TGT 240 Gin His Ala Thr He Pro Leu Leu Pro Asp Glu He Leu Ala Lys Cys 65 70 75 80
CAA GCG CGC AAT ATA CCT TCC TTA ACG TAC AAT CAG TTG GCC GTT ATA 288 Gin Ala Arg Asn He Pro Ser Leu Thr Tyr Asn Gin Leu Ala Val He 85 90 95
TAC AAG TTA ATT TGG TAC CAG GAT GGC TAT GAG CAG CCA TCT GAA GAG 336 Tyr Lys Leu He Trp Tyr Gin Asp Gly Tyr Glu Gin Pro Ser Glu Glu 100 105 110
GAT CTC AGG CGT ATA ATG AGT CAA CCC GAT GAG AAC GAG AGC CAA ACG 384 Asp Leu Arg Arg He Met Ser Gin Pro Asp Glu Asn Glu Ser Gin Thr 115 120 125
GAC GTC AGC TTT CGG CAT ATA ACC GAG ATA ACC ATA CTC ACG GTC CAG 432 Asp Val Ser Phe Arg His He Thr Glu He Thr He Leu Thr Val Gin 130 135 140
TTG ATT GTT GAG TTT GCT AAA GGT CTA CCA GCG TTT ACA AAG ATA CCC 480 Leu He Val Glu Phe Ala Lys Gly Leu Pro Ala Phe Thr Lys He Pro 145 150 155 160
CAG GAG GAC CAG ATC ACG TTA CTA AAG GCC TGC TCG TCG GAG GTG ATG 528 Gin Glu Asp Gin He Thr Leu Leu Lys Ala Cys Ser Ser Glu Val Met 165 170 175 ATG CTG CGT ATG GCA CGA CGC TAT GAC CAC AGC TCG GAC TCA ATA TTC 576
Met Leu Arg Met Ala Arg Arg Tyr Asp His Ser Ser Asp Ser He Phe
180 185 190
TTC GCG AAT AAT AGA TCA TAT ACG CGG GAT TCT TAC AAA ATG GCC GGA 624
Phe Ala Asn Asn Arg Ser Tyr Thr Arg Asp Ser Tyr Lys Met Ala Gly 195 200 205
ATG GCT GAT AAC ATT GAA GAC CTG CTG CAT TTC TGC CGC CAA ATG TTC 672
Met Ala Asp Asn He Glu Asp Leu Leu His Phe Cys Arg Gin Met Phe 210 215 220
TCG ATG AAG GTG GAC AAC GTC GAA TAC GCG CTT CTC ACT GCC ATT GTG 720
Ser Met Lys Val Asp Asn Val Glu Tyr Ala Leu Leu Thr Ala He Val 225 230 235 240
ATC TTC TCG GAC CGG CCG GGC CTG GAG AAG GCC CAA CTA GTC GAA GCG 768
He Phe Ser Asp Arg Pro Gly Leu Glu Lys Ala Gin Leu Val Glu Ala 245 250 255
ATC CAG AGC TAC TAC ATC GAC ACG CTA CGC ATT TAT ATA CTC AAC CGC 816
He Gin Ser Tyr Tyr He Asp Thr Leu Arg He Tyr He Leu Asn Arg
260 265 270
CAC TGC GGC GAC TCA ATG AGC CTC GTC TTC TAC GCA AAG CTG CTC TCG 864
His Cys Gly Asp Ser Met Ser Leu Val Phe Tyr Ala Lys Leu Leu Ser 275 280 285
ATC CTC ACC GAG CTG CGT ACG CTG GGC AAC CAG AAC GCC GAG ATG TGT 912
He Leu Thr Glu Leu Arg Thr Leu Gly Asn Gin Asn Ala Glu Met Cys 290 295 300
TTC TCA CTA AAG CTC AAA AAC CGC AAA CTG CCC AAG TTC CTC GAG GAG 960
Phe Ser Leu Lys Leu Lys Asn Arg Lys Leu Pro Lys Phe Leu Glu Glu 305 310 315 320
ATC TGG GAC GTT CAT GCC ATC CCG CCA TCG GTC CAG TCG CAC CTT CAG 1008
He Trp Asp Val His Ala He Pro Pro Ser Val Gin Ser His Leu Gin 325 330 335
ATT ACC CAG GAG GAG AAC GAG CGT CTC GAG CGG GCT GAG CGT ATG CGG 1056
He Thr Gin Glu Glu Asn Glu Arg Leu Glu Arg Ala Glu Arg Met Arg
340 345 350
GCA TCG GTT GGG GGC GCC ATT ACC GCC GGC ATT GAT TGC GAC TCT GCC 1104
Ala Ser Val Gly Gly Ala He Thr Ala Gly He Asp Cys Asp Ser Ala 355 360 365
TCC ACT TCG GCG GCG GCA GCC GCG GCC CAG CAT CAG CCT CAG CCT CAG 1152
Ser Thr Ser Ala Ala Ala Ala Ala Ala Gin His Gin Pro Gin Pro Gin 370 375 380
CCC CAG CCC CAA CCC TCC TCC CTG ACC CAG AAC GAT TCC CAG CAC CAG 1200
Pro Gin Pro Gin Pro Ser Ser Leu Thr Gin Asn Asp Ser Gin His Gin 385 390 395 400
ACA CAG CCG CAG CTA CAA CCT CAG CTA CCA CCT CAG CTG CAA GGT CAA 1248
Thr Gin Pro Gin Leu Gin Pro Gin Leu Pro Pro Gin Leu Gin Gly Gin 405 410 415
CTG CAA CCC CAG CTC CAA CCA CAG CTT CAG ACG CAA CTC CAG CCA CAG 1296
Leu Gin Pro Gin Leu Gin Pro Gin Leu Gin Thr Gin Leu Gin Pro Gin
420 425 430
ATT CAA CCA CAG CCA CAG CTC CTT CCC GTC TCC GCT CCC GTG CCC GCC 1344
He Gin Pro Gin Pro Gin Leu Leu Pro Val Ser Ala Pro Val Pro Ala 435 440 445 TCC GTA ACC GCA CCT GGT TCC TTG TCC GCG GTC AGT ACG AGC AGC GAA 1392 Ser Val Thr Ala Pro Gly Ser Leu Ser Ala Val Ser Thr Ser Ser Glu 450 455 460
TAC ATG GGC GGA AGT GCG GCC ATA GGA CCC ATC ACG CCG GCA ACC ACC 1440 Tyr Met Gly Gly Ser Ala Ala He Gly Pro He Thr Pro Ala Thr Thr 465 470 475 480
AGC AGT ATC ACG GCT GCC GTT ACC GCT AGC TCC ACC ACA TCA GCG GTA 1488 Ser Ser He Thr Ala Ala Val Thr Ala Ser Ser Thr Thr Ser Ala Val 485 490 495
CCG ATG GGC AAC GGA GTT GGA GTC GGT GTT GGG GTG GGC GGC AAC GTC 1536 Pro Met Gly Asn Gly Val Gly Val Gly Val Gly Val Gly Gly Asn Val 500 505 510
AGC ATG TAT GCG AAC GCC CAG ACG GCG ATG GCC TTG ATG GGT GTA GCC 1584 Ser Met Tyr Ala Asn Ala Gin Thr Ala Met Ala Leu Met Gly Val Ala 515 520 525
CTG CAT TCG CAC CAA GAG CAG CTT ATC GGG GGA GTG GCG GTT AAG TCG 1632 Leu His Ser His Gin Glu Gin Leu He Gly Gly Val Ala Val Lys Ser 530 535 540
GAG CAC TCG ACG ACT GCA T AGCAG 1656
Glu His Ser Thr Thr Ala 545 550
(2) INFORMATION FOR SEQ ID NO:18:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 550 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 18:
Met Arg Pro Glu Cys Val Val Pro Glu Asn Gin Cys Ala Met Lys Arg 1 5 10 15
Arg Glu Lys Lys Ala Gin Lys Glu Lys Asp Lys Met Thr Thr Ser Pro 20 25 30
Ser Ser Gin His Gly Gly Asn Gly Ser Leu Ala Ser Gly Gly Gly Gin 35 40 45
Asp Phe Val Lys Lys Glu He Leu Asp Leu Met Thr Cys Glu Pro Pro 50 55 60
Gin His Ala Thr He Pro Leu Leu Pro Asp Glu He Leu Ala Lys Cys 65 70 75 80
Gin Ala Arg Asn He Pro Ser Leu Thr Tyr Asn Gin Leu Ala Val He 85 90 95
Tyr Lys Leu He Trp Tyr Gin Asp Gly Tyr Glu Gin Pro Ser Glu Glu 100 105 110
Asp Leu Arg Arg He Met Ser Gin Pro Asp Glu Asn Glu Ser Gin Thr 115 120 125
Asp Val Ser Phe Arg His He Thr Glu He Thr He Leu Thr Val Gin 130 135 140 Leu He Val Glu Phe Ala Lys Gly Leu Pro Ala Phe Thr Lys He Pro 145 150 155 160
Gin Glu Asp Gin He Thr Leu Leu Lys Ala Cys Ser Ser Glu Val Met 165 170 175
Met Leu Arg Met Ala Arg Arg Tyr Asp His Ser Ser Asp Ser He Phe 180 185 190
Phe Ala Asn Asn Arg Ser Tyr Thr Arg Asp Ser Tyr Lys Met Ala Gly 195 200 205
Met Ala Asp Asn He Glu Asp Leu Leu His Phe Cys Arg Gin Met Phe 210 215 220
Ser Met Lys Val Asp Asn Val Glu Tyr Ala Leu Leu Thr Ala He Val 225 230 235 240
He Phe Ser Asp Arg Pro Gly Leu Glu Lys Ala Gin Leu Val Glu Ala 245 250 255
He Gin Ser Tyr Tyr He Asp Thr Leu Arg He Tyr He Leu Asn Arg 260 265 270
His Cys Gly Asp Ser Met Ser Leu Val Phe Tyr Ala Lys Leu Leu Ser 275 280 285
He Leu Thr Glu Leu Arg Thr Leu Gly Asn Gin Asn Ala Glu Met Cys 290 295 300
Phe Ser Leu Lys Leu Lys Asn Arg Lys Leu Pro Lys Phe Leu Glu Glu 305 310 315 320
He Trp Asp Val His Ala He Pro Pro Ser Val Gin Ser His Leu Gin 325 330 335
He Thr Gin Glu Glu Asn Glu Arg Leu Glu Arg Ala Glu Arg Met Arg 340 345 350
Ala Ser Val Gly Gly Ala He Thr Ala Gly He Asp Cys Asp Ser Ala 355 360 365
Ser Thr Ser Ala Ala Ala Ala Ala Ala Gin His Gin Pro Gin Pro Gin 370 375 380
Pro Gin Pro Gin Pro Ser Ser Leu Thr Gin Asn Asp Ser Gin His Gin 385 390 395 400
Thr Gin Pro Gin Leu Gin Pro Gin Leu Pro Pro Gin Leu Gin Gly Gin 405 410 415
Leu Gin Pro Gin Leu Gin Pro Gin Leu Gin Thr Gin Leu Gin Pro Gin 420 425 430
He Gin Pro Gin Pro Gin Leu Leu Pro Val Ser Ala Pro Val Pro Ala 435 440 445
Ser Val Thr Ala Pro Gly Ser Leu Ser Ala Val Ser Thr Ser Ser Glu 450 455 460
Tyr Met Gly Gly Ser Ala Ala He Gly Pro He Thr Pro Ala Thr Thr 465 470 475 480
Ser Ser He Thr Ala Ala Val Thr Ala Ser Ser Thr Thr Ser Ala Val 485 490 495 Pro Met Gly Asn Gly Val Gly Val Gly Val Gly Val Gly Gly Asn Val 500 505 510
Ser Met Tyr Ala Asn Ala Gin Thr Ala Met Ala Leu Met Gly Val Ala 515 520 525
Leu His Ser His Gin Glu Gin Leu He Gly Gly Val Ala Val Lys Ser 530 535 540
Glu His Ser Thr Thr Ala 545 550
(2) INFORMATION FOR SEQ ID NO:19:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 855 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1..853
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..855
(D) OTHER INFORMATION: /note= "domain = glucocorticoid receptor ligand binding domain. "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:19:
ACA AAG AAA AAA ATC AAA GGG ATT CAG CAA GCC ACT GCA GGA GTC TCA 48 Thr Lys Lys Lys He Lys Gly He Gin Gin Ala Thr Ala Gly Val Ser 1 5 10 15
CAA GAC ACT TCG GAA AAT CCT AAC AAA ACA ATA GTT CCT GCA GCA TTA 96 Gin Asp Thr Ser Glu Asn Pro Asn Lys Thr He Val Pro Ala Ala Leu 20 25 30
CCA CAG CTC ACC CCT ACC TTG GTG TCA CTG CTG GAG GTG ATT GAA CCC 144 Pro Gin Leu Thr Pro Thr Leu Val Ser Leu Leu Glu Val He Glu Pro 35 40 45
GAG GTG TTG TAT GCA GGA TAT GAT AGC TCT GTT CCA GAT TCA GCA TGG 192 Glu Val Leu Tyr Ala Gly Tyr Asp Ser Ser Val Pro Asp Ser Ala Trp 50 55 60
AGA ATT ATG ACC ACA CTC AAC ATG TTA GGT GGG CGT CAA GTG ATT GCA 240 Arg He Met Thr Thr Leu Asn Met Leu Gly Gly Arg Gin Val He Ala 65 70 75 80
GCA GTG AAA TGG GCA AAG GCG ATA CTA GGC TTG AGA AAC TTA CAC CTC 288 Ala Val Lys Trp Ala Lys Ala He Leu Gly Leu Arg Asn Leu His Leu 85 90 95
GAT GAC CAA ATG ACC CTG CTA CAG TAC TCA TGG ATG TTT CTC ATG GCA 336 Asp Asp Gin Met Thr Leu Leu Gin Tyr Ser Trp Met Phe Leu Met Ala 100 105 110
TTT GCC TTG GGT TGG AGA TCA TAC AGA CAA TCA AGC GGA AAC CTG CTC 384 Phe Ala Leu Gly Trp Arg Ser Tyr Arg Gin Ser Ser Gly Asn Leu Leu 115 120 125 TGC TTT GCT CCT GAT CTG ATT ATT AAT GAG CAG AGA ATG TCT CTA CCC 432 Cys Phe Ala Pro Asp Leu He He Asn Glu Gin Arg Met Ser Leu Pro 130 135 140
TGC ATG TAT GAC CAA TGT AAA CAC ATG CTG TTT GTC TCC TCT GAA TTA 480 Cys Met Tyr Asp Gin Cys Lys His Met Leu Phe Val Ser Ser Glu Leu 145 150 155 160
CAA AGA TTG CAG GTA TCC TAT GAA GAG TAT CTC TGT ATG AAA ACC TTA 528 Gin Arg Leu Gin Val Ser Tyr Glu Glu Tyr Leu Cys Met Lys Thr Leu 165 170 175
CTG CTT CTC TCC TCA GTT GCT AAG GAA GGT CTG AAG AGC CAA GAG TTA 576 Leu Leu Leu Ser Ser Val Ala Lys Glu Gly Leu Lys Ser Gin Glu Leu 180 185 190
TTT GAT GAG ATT CGA ATG ACT TAT ATC AAA GAG CTA GGA AAA GCC ATC 624 Phe Asp Glu He Arg Met Thr Tyr He Lys Glu Leu Gly Lys Ala He 195 200 205
GTC AAA AGG GAA GGG AAC TCC AGT CAG AAC TGG CAA CGG TTT TAC CAA 672 Val Lys Arg Glu Gly Asn Ser Ser Gin Asn Trp Gin Arg Phe Tyr Gin 210 215 220
CTG ACA AAG CTT CTG GAC TCC ATG CAT GAG GTG GTT GAG AAT CTC CTT 720 Leu Thr Lys Leu Leu Asp Ser Met His Glu Val Val Glu Asn Leu Leu 225 230 235 240
ACC TAC TGC TTC CAG ACA TTT TTG GAT AAG ACC ATG AGT ATT GAA TTC 768 Thr Tyr Cys Phe Gin Thr Phe Leu Asp Lys Thr Met Ser He Glu Phe 245 250 255
CCA GAG ATG TTA GCT GAA ATC ATC ACT AAT CAG ATA CCA AAA TAT TCA 816 Pro Glu Met Leu Ala Glu He He Thr Asn Gin He Pro Lys Tyr Ser 260 265 270
AAT GGA AAT ATC AAA AAG CTT CTG TTT CAT CAA AAA T GA 855
Asn Gly Asn He Lys Lys Leu Leu Phe His Gin Lys 275 280
(2) INFORMATION FOR SEQ ID NO:20:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 284 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:20:
Thr Lys Lys Lys He Lys Gly He Gin Gin Ala Thr Ala Gly Val Ser
1 5 10 15
Gin Asp Thr Ser Glu Asn Pro Asn Lys Thr He Val Pro Ala Ala Leu 20 25 30
Pro Gin Leu Thr Pro Thr Leu Val Ser Leu Leu Glu Val He Glu Pro 35 40 45
Glu Val Leu Tyr Ala Gly Tyr Asp Ser Ser Val Pro Asp Ser Ala Trp 50 55 60
Arg He Met Thr Thr Leu Asn Met Leu Gly Gly Arg Gin Val He Ala 65 70 75 80 Ala Val Lys Trp Ala Lys Ala He Leu Gly Leu Arg Asn Leu His Leu 85 90 95
Asp Asp Gin Met Thr Leu Leu Gin Tyr Ser Trp Met Phe Leu Met Ala 100 105 110
Phe Ala Leu Gly Trp Arg Ser Tyr Arg Gin Ser Ser Gly Asn Leu Leu 115 120 125
Cys Phe Ala Pro Asp Leu He He Asn Glu Gin Arg Met Ser Leu Pro 130 135 140
Cys Met Tyr Asp Gin Cys Lys His Met Leu Phe Val Ser Ser Glu Leu 145 150 155 160
Gin Arg Leu Gin Val Ser Tyr Glu Glu Tyr Leu Cys Met Lys Thr Leu 165 170 175
Leu Leu Leu Ser Ser Val Ala Lys Glu Gly Leu Lys Ser Gin Glu Leu 180 185 190
Phe Asp Glu He Arg Met Thr Tyr He Lys Glu Leu Gly Lys Ala He 195 200 205
Val Lys Arg Glu Gly Asn Ser Ser Gin Asn Trp Gin Arg Phe Tyr Gin 210 215 220
Leu Thr Lys Leu Leu Asp Ser Met His Glu Val Val Glu Asn Leu Leu 225 230 235 240
Thr Tyr Cys Phe Gin Thr Phe Leu Asp Lys Thr Met Ser He Glu Phe 245 250 255
Pro Glu Met Leu Ala Glu He He Thr Asn Gin He Pro Lys Tyr Ser 260 265 270
Asn Gly Asn He Lys Lys Leu Leu Phe His Gin Lys 275 280
(2) INFORMATION FOR SEQ ID NO:21:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 50 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..50
(D) OTHER INFORMATION: /note= "element = copper inducible regulatory element (ACE1 binding site) . "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:21: AGCTTAGCGA TGCGTCTTTT CCGCTGAACC GTTCCAGCAA AAAAGACTAG 50
(2) INFORMATION FOR SEQ ID NO:22:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 19 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear ( ix) FEATURE :
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..19
(D) OTHER INFORMATION: /note= "element = tet operator."
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:22: ACTCTATCAG TGATAGAGT 19
(2) INFORMATION FOR SEQ ID NO:23:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ix) FEATURE:
(A) NAME/KEY: misc_feature
(B) LOCATION: 1..29
(D) OTHER INFORMATION: /note= "element = ecdysone response element. "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: GATCCGACAA GGGTTCAATG CACTTGTCA 29
(2) INFORMATION FOR SEQ ID NO:24:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 371 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
( x) FEATURE:
(A) NAME/KEY: mιsc_feature
(B) LOCATION: 1..371
(D) OTHER INFORMATION: /note= "element = heat shock inducible regulatory element (HSP81-1 promoter) . "
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:24:
GTGGAGTCTC GAAACGAAAA GAACTTTCTG GAATTCGTTT GCTCACAAAG CTAAAAACGG 60
TTGATTTCAT CGAAATACGG CGTCGTTTTC AAAGAACAAT CCAGAAATCA CTGGTTTTCC 120
TTTATTTCAA AAGAAGAGAC TAGAACTTTA TTTCTCCTCT ATAAAATCAC TTTGTTTTTC 180
CCTCTCTTCT TCATAAATCA ACAAAACAAT CACAAATCTC TCGAAACGCT CTCGAAGTTC 240
CAAATTTTCT CTTAGCATTC TCTTTCGTTT CTCGTTTGCG TTGAATCAAA GTTCGTTGCG 300
ATGGCGGATG TTCAGATGGC TGATGCAGAG ACTTTTGCTT TCCAAGCTGA GATTAACCAG 360
CTTCTTAGCT T 371 (2) INFORMATION FOR SEQ ID NO:25:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:25: GGATCCGGAT CAAAAATGGG AAGGGGTAG 29
(2) INFORMATION FOR SEQ ID NO:26:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 30 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:26: GGATCCGCTG CGGCGAAGCA GCCAAGGTTG 30

Claims

We claim :
1. A non-naturally occurring seed plant, comprising a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product, provided that said first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
2. The non-naturally occurring seed plant of claim 1, wherein said first floral meristem identity gene product is selected from the group consisting of APETALAl (API) , CAULIFLOWER (CAL) and LEAFY (LFY) .
3. The non-naturally occurring seed plant of claim 1, which is characterized by early reproductive development .
4. The non-naturally occurring seed plant of claim 1, which is an angiosperm.
5. The non-naturally occurring angiosperm of claim 4, which is selected from the group consisting of:
cereal plant; leguminous plant; oilseed plant; flowering tree; fruit-bearing plant; hop-bearing plant; ornamental flower; coffee plant; and cacao plant .
6. The non-naturally occurring seed plant of claim 1, which is a gymnosperm.
7. The non-naturally occurring gymnosperm of claim 6, which is a conifer.
8. The non-naturally occurring seed plant of claim 1, comprising an endogenous floral meristem identity gene having a modified gene regulatory element.
9. The non-naturally occurring seed plant of claim 1, comprising a transgenic seed plant having a first exogenous gene regulatory element that regulates said first ectopically expressible nucleic acid molecule.
10. The transgenic seed plant of claim 9, wherein said first ectopically expressible nucleic acid molecule is a first exogenous nucleic acid molecule.
11. The transgenic seed plant of claim 10, wherein said first floral meristem identity gene product is APETALAl (API) .
12. The transgenic seed plant of claim 11, wherein said API has an amino acid sequence selected from the group consisting of SEQ ID NO: 2, SEQ ID NO: 4, SEQ ID NO: 6 and SEQ ID NO: 8.
13. The transgenic seed plant of claim 10, wherein said first floral meristem identity gene product is CAULIFLOWER (CAL) .
14. The transgenic seed plant of claim 13 , wherein said CAL has an amino acid sequence selected from the group consisting of SEQ ID NO: 10 and SEQ ID NO: 12.
15. The transgenic seed plant of claim 10, wherein said first floral meristem identity gene product is LEAFY (LFY) .
16. The transgenic seed plant of claim 15, wherein said LFY is Arabidopsis thaliana LFY having the amino acid sequence SEQ ID NO: 16.
17. The non-naturally occurring seed plant of claim 1, further comprising a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product and provided that said second nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
18. The transgenic seed plant of claim 9, further comprising a second exogenous gene regulatory element that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product.
19. The transgenic seed plant of claim 10, further comprising a second exogenous gene regulatory element that regulates a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product.
20. The transgenic seed plant of claim 19, wherein said second ectopically expressible nucleic acid molecule is a second exogenous nucleic acid molecule encoding said second floral meristem identity gene product, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product.
21. The transgenic seed plant of claim 20, wherein said first floral meristem identity gene product is API and said second floral meristem identity gene product is LFY.
22. The transgenic seed plant of claim 21, wherein said API has an amino acid sequence selected from the group consisting of SEQ ID NO: 2, SEQ ID NO: 4, SEQ ID NO: 6 and SEQ ID NO: 8 and said LFY has the amino acid sequence of SEQ ID NO: 16.
23. The transgenic seed plant of claim 20, wherein said first floral meristem identity gene product is CAL and said second floral meristem identity gene product is LFY.
24. The transgenic seed plant of claim 23, wherein said CAL has an amino acid sequence selected from the group consisting of SEQ ID NO: 10 and SEQ ID NO: 12 and said LFY has the amino acid sequence of SEQ ID NO: 16.
25. The transgenic seed plant of claim 20, wherein said first floral meristem identity gene product is API and said second floral meristem identity gene product is CAL.
26. The transgenic seed plant of claim 25, wherein said API has an amino acid sequence selected from the group consisting of SEQ ID NO: 2, SEQ ID NO: 4, SEQ ID NO: 6 and SEQ ID NO: 8 and said CAL has an amino acid sequence selected from the group consisting of SEQ ID NO: 10 and SEQ ID NO: 12.
27. A method of converting shoot meristem to floral meristem in an angiosperm, comprising ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product in the angiosperm, provided that said first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
28. A method of converting shoot meristem to floral meristem in an angiosperm, comprising introducing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product into the angiosperm.
29. The method of claim 28, wherein said first floral meristem identity gene product is selected from the group consisting of API, CAL and LFY.
30. The method of claim 28, further comprising introducing a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product into the angiosperm, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product.
31. A method of promoting early reproductive development in a seed plant, comprising ectopically expressing a first nucleic acid molecule encoding a first floral meristem identity gene product in the seed plant, provided that said first nucleic acid molecule is not ectopically expressed due to a mutation in an endogenous TERMINAL FLOWER gene.
32. A method of promoting early reproductive development in a seed plant, comprising introducing a first ectopically expressible nucleic acid molecule encoding a first floral meristem identity gene product into the seed plant .
33. The method of claim 32, wherein said floral meristem identity gene product is selected from the group consisting of API, CAL and LFY.
34. The method of claim 33, further comprising introducing a second ectopically expressible nucleic acid molecule encoding a second floral meristem identity gene product into the seed plant, wherein said first floral meristem identity gene product is different from said second floral meristem identity gene product.
PCT/US1996/009429 1996-06-05 1996-06-05 Seed plants exhibiting early reproductive development and methods of making same WO1997046077A1 (en)

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Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999053070A1 (en) * 1998-04-15 1999-10-21 The Salk Institute For Biological Studies Flowering locus t (ft) and genetically modified plants having modulated flower development
WO2000050615A1 (en) * 1999-02-25 2000-08-31 Wisconsin Alumni Research Foundation Alteration of flowering time in plants
WO2001014559A1 (en) * 1999-08-19 2001-03-01 Kumiai Chemical Industry Co., Ltd. Gene regulating plant branching, vector containing the gene, microorganism transformed by the vector, and method for regulating plant branching by using the microorganism
US6693228B1 (en) 1999-02-25 2004-02-17 Wisconsin Alumni Research Foundation Alteration of flowering time in plants
CN110616226A (en) * 2019-10-29 2019-12-27 南京农业大学 Specific molecular marker of pear PbELF3b gene and application thereof

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
DEVELOPMENT, 1993, Vol. 119, No. 3, BOWMAN et al., "Control of Flower Development in Arabidopsis Thaliana by APETALA1 and Interacting Genes", pages 721-743. *
DEVELOPMENT, 1993, Vol. 119, SCHULTZ et al., "Genetic Analysis of the Floral Initiation Process (FLIP) in Arabidopsis", pages 745-765. *
NATURE, 12 October 1995, Vol. 377, WIEGEL et al., "A Developmental Switch Sufficient for Flower Initiation in Diverse Plants", pages 495-500. *
THE PLANT CELL, June 1993, Vol. 5, No. 6, SHANNON et al., "Genetic Interactions that Regulate Inflorescence Development in Arabidopsis", pages 639-655. *
THE PLANT CELL, September 1991, Vol. 3, No. 9, SHANNON et al., "A Mutation in the Arabidopsis TFL1 Gene Affects Inflorescence Meristem Development", pages 877-892. *

Cited By (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999053070A1 (en) * 1998-04-15 1999-10-21 The Salk Institute For Biological Studies Flowering locus t (ft) and genetically modified plants having modulated flower development
US6225530B1 (en) * 1998-04-15 2001-05-01 The Salk Institute For Biological Studies Flowering locus T (FT) and genetically modified plants having modulated flower development
AU757842B2 (en) * 1998-04-15 2003-03-06 Salk Institute For Biological Studies, The Flowering locus T (FT) and genetically modified plants having modulated flower development
AU757842C (en) * 1998-04-15 2003-12-11 Salk Institute For Biological Studies, The Flowering locus T (FT) and genetically modified plants having modulated flower development
US6713663B2 (en) 1998-04-15 2004-03-30 The Salk Institute For Biological Studies Flowering locus T (FT) and genetically modified plants having delayed flower development
WO2000050615A1 (en) * 1999-02-25 2000-08-31 Wisconsin Alumni Research Foundation Alteration of flowering time in plants
US6693228B1 (en) 1999-02-25 2004-02-17 Wisconsin Alumni Research Foundation Alteration of flowering time in plants
US7888122B2 (en) 1999-02-25 2011-02-15 Wisconsin Alumni Research Foundation Alteration of flowering time in plants
WO2001014559A1 (en) * 1999-08-19 2001-03-01 Kumiai Chemical Industry Co., Ltd. Gene regulating plant branching, vector containing the gene, microorganism transformed by the vector, and method for regulating plant branching by using the microorganism
US6995302B1 (en) 1999-08-19 2006-02-07 Kumiai Chemical Industry Co., Ltd. Gene regulating plant branching, vector containing the gene, microorganism transformed by the vector, and method for regulating plant branching by using the microorganism
CN110616226A (en) * 2019-10-29 2019-12-27 南京农业大学 Specific molecular marker of pear PbELF3b gene and application thereof
CN110616226B (en) * 2019-10-29 2020-08-04 南京农业大学 specific molecular marker of pear PbE L F3b gene and application thereof

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