WO1997003200A1 - Nucleic acid coding for cmp-n-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins - Google Patents

Nucleic acid coding for cmp-n-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins Download PDF

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Publication number
WO1997003200A1
WO1997003200A1 PCT/EP1996/002966 EP9602966W WO9703200A1 WO 1997003200 A1 WO1997003200 A1 WO 1997003200A1 EP 9602966 W EP9602966 W EP 9602966W WO 9703200 A1 WO9703200 A1 WO 9703200A1
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WIPO (PCT)
Prior art keywords
nucleic acid
hydroxylase
cmp
cell
seq
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PCT/EP1996/002966
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French (fr)
Inventor
Roland Schauer
Wiebke Schlenzka
Lee Shaw
Sørge KELM
Anton Haselbeck
Konrad Honold
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Boehringer Mannheim Gmbh
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Priority claimed from EP95110609A external-priority patent/EP0752474A1/en
Application filed by Boehringer Mannheim Gmbh filed Critical Boehringer Mannheim Gmbh
Priority to AU66118/96A priority Critical patent/AU6611896A/en
Priority to EP96925669A priority patent/EP0837942A1/en
Priority to JP9505487A priority patent/JPH10510434A/en
Publication of WO1997003200A1 publication Critical patent/WO1997003200A1/en

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0071Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/475Growth factors; Growth regulators
    • C07K14/505Erythropoietin [EPO]

Definitions

  • Sialic acids are a group of about 30 naturally occurring acidic sugars all of which are derived, in terms of structure, from N-acetyl-neuraminic acid (Neu5Ac) which is the most common sialic acid (R. Schauer (1985) (I)) and A. Varki (1992a) (2)). In most cases, they are located in the terminal position in the glycan chains of glycoconjugates. On account of this exposed position, they play an important role in cellular recognition, e.g. in the case of inflammatory reactions, maturation of immune cells, differentiation processes, hormone-, pathogen- and toxin binding (R. Schauer (1985) (1) and A. Varki (1992b) (3)). Also the biological effectiveness of glycoprotein hormones, such as, for instance, erythropoietin, is influenced by sialic acids (N. Imai et al. (1990) (4)).
  • N-glycolylneuraminic acid is distinguished from Neu5Ac by an additional hydroxyl group at the C5-N-acetyl residue.
  • Neu5Gc is present in most animal groups having sialoglycoconjugates, the amount being specific with respect to type, tissue and development (A.P. Corfield and R. Schauer (1982) (5); G. Reuter et al. (1988) (6) and D. Bouhours and J.-F. Bouhours (1983) (7)).
  • Neu5Gc does not occur in healthy human and chicken tissues.
  • Neu5Gc-containing glycoconjugates act as antigens and may induce the formation of antibodies.
  • Hanganutziu-Deicher antigens and antibodies H. Deicher (1926) (8).
  • Hanganutziu-Deicher antigens were detectable in a great number of human tumors (colon carcinoma, retinoblastoma, melanoma and carcinoma of the breast) as well as in chicken tumor tissues (H. Higashi et al. (1985) (9) and H. Higashi (1990) (10)). Although these amounts were very small (usually less than 1% of the total amount of sialic acid, often in the range of from 0.01 to 0.1%), they were capable of inducing the formation of Hanganutziu-Deicher antibodies (T. Higashihara (1991) (11)).
  • CMP- Neu5Ac hydroxylase cytidine monophospho-N-acetylneuramic acid hydroxylase. This enzyme catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc in the presence of molecular oxygen and NADH (L. Shaw and R. Schauer (1988) (12)).
  • the electrons for the reductive activation of the oxygen are passed to the hydroxylase via an electron transport chain consisting of cytochrome b5 reductase and cytochrome b5 (Y. Kozutsumi et al. (1990) (13) and L. Shaw et al. (1994) (14)).
  • CMP-Neu5Gc takes place in cytoplasm.
  • the proteins which take up CMP sialic acids in the Golgi apparatus (A. Lepers et al. (1989) (15)) and transfer them to resultant glycoconjugates (H.-H. Higa and J.C. Paulson (1985) (16)) accept both CMP sialic acids equally as a substrate.
  • the ratio of Neu5Ac and Neu5Gc in the glycoconjugates produced by the cells corresponds to the ratio of the respective CMP sialic acids in cytosol. The latter is dependent on the activity ofthe CMP-Neu5Ac hydroxylase.
  • the CMP-Neu5Ac hydroxylase has to date been isolated from mouse liver and pig submandibular glands to homogeneity and characterized (T. Kawano et al. (1994) (18), P. Schneckenburger et al. (1994) (19) and W. Schlenzka et al. (1994) (20)).
  • the purification of the enzyme from pig submandibular glands was carried out using ion exchange chromatography, chromatography with immobilized triazin dyes, hydrophobic interaction chromatography and gel filtration (W. Schlenzka et al. (1994) (20)).
  • the hydroxylase from mouse liver has been isolated in two different ways (P. Schneckenburger et al. (1994) (19)).
  • hydroxylase from mouse are described in JP-A 06 113838 (T. Kawano) (84). From pig submandibular glands, due to the fact that the tissue is better accessible, larger amounts of enzyme can be isolated. From 500 g of tissue about 200 ⁇ g of hydroxylase protein can be obtained.
  • CMP-Neu5Ac hydroxylase from pig submandibular glands and the one from mouse liver are soluble monomers having a molecular weight of 65 kDa.
  • Their catalytic interactions with CMP-Neu5Ac and cytochrome b5 are very similar to one another. The activity of both these enzymes seems to be dependent on an iron-containing prosthetic group.
  • Antibodies that are directed against this 65 kDa protein from pig submandibular glands inhibit the CMP-Neu5Ac hydroxylase activity and, in Western blotting, exhibit a strong cross- reaction with the purified enzyme from mouse liver.
  • Proteins used for therapeutic application should, in particular in the case of long-term therapy, contain, on the corresponding glycoproteins and glycoconjugates respectively (proteoglycans, glycolipids), substantially no epitopes that do not occur in humans.
  • the invention provides such recombinant proteins and methods for their production.
  • a subject-matter of the invention therefore is a method of producing mammalian cells which are defective in the hydroxylase activity, such cells, and the use of such cells for the production of recombinant protein. It has, surprisingly, been found that for effective production of hydroxylase-deficient mammalian cell it is necessary to perform a knock-out of the hydroxylase gene in the N-terminal region of said gene. Manipulating the gene of hydroxylase in other regions, manipulating the regulatory sequences, or manipulating the other components of the hydroxylase system (cytochrome b5 and cytochrome b5 reductase) does not result in an effective reduction of NeuGc glycosylation.
  • One subject-matter ofthe invention is the molecular cloning ofthe CMP-Neu5Ac hydroxylase (also referred to hereinafter as "hydroxylase") and the isolation of nucleic acid molecules which encode said enzyme.
  • the CMP-Neu5Ac hydroxylase also referred to hereinafter as "hydroxylase”
  • nucleic acid molecules which hybridize to SEQ ID NO:l under stringent conditions as set forth below or comprise SEQ ED NO:l completely or at least 98% thereof. Nucleic acid molecules encoding the enzyme satisfy this criterion.
  • the recombinant hydroxylase is able to catalyze the conversion of CMP-Neu5 Ac to CMP-Neu5Gc in vivo and in isolated cells and cell lines.
  • the soluble recombinant hydroxylase is active in vitro.
  • a further subject-matter of the invention is a method of detecting nucleic acid molecules which code specifically for hydroxylase proteins.
  • detected are DNA and mRNA species.
  • Useful probes are nucleic acid molecules which bind specifically under the conditions of the test method applied, e.g. in situ hybridization, colony hybridization, Northern hybridization, or related techniques.
  • a further subject-matter of the invention is an oligonucleotide molecule which is complementary to a nucleic acid molecule of hydroxylase occurring in mammalian cells.
  • Such oligonucleotide molecules which have, in general, about 15 to 50 bases for being specific, are useful for inhibiting expression of hydroxylase, preferably on the DNA or mRNA level.
  • Such oligonucleotide molecules are useful as antisense agents in the treatment of tumor therapy, especially in the treatment and prevention of metastases.
  • a further subject-matter of the invention is a nucleic acid molecule, which inhibits the expression of hydroxylase in a host cell by altering the hydroxylase gene, preferably by homologous recombination, in such a way that proteins with hydroxylase activity are not expressed in said host cell in an amount which is sufficient for a detectable Neu5Gc glycosylation of recombinant proteins produced in said host cell.
  • a further subject-matter of the invention is a method for the production of recombinant glycoproteins in mammalian cells wherein a mammalian cell is transfected with a nucleic acid molecule, which secures expression of said desired glycoprotein, culturing the cells, recovering the protein from the cell or the cell supernatant, characterized in that as a mammalian cell there is used a mammalian cell with no detectable Neu5Gc glycosylation (hydroxylase deficient), preferably in a cell in which the gene encoding CMP-Neu5Ac hydroxylase is inactivated, as well as such cells and so produced recombinant glycoproteins.
  • the invention comprises a recombinant protein having hydroxylase activity.
  • the protein can be defined by its DNA sequence and by the amino acid sequence derived therefrom (see, e.g., SEQ ID NO:2).
  • the hydroxylase protein can occur in natural allelic variations which differ from individual to individual. Such variations of the amino acids are usually amino acid substitutions. However, they may also be deletions, insertions or additions of amino acids to the total sequence.
  • the hydroxylase protein according to the invention depending, both in respect of the extent and type, on the cell and cell type in which it is expressed - can be in glycosylated or non-glycosylated form.
  • hybridize denotes a binding of such a sequence to SEQ ID NO: l under standard stringent hybridization conditions as set forth below.
  • the hydroxylase can now be produced by recombinant means.
  • Non-glycosylated hydroxylase is obtained when it is produced recombinantly in prokaryotes.
  • the nucleic acid sequences provided by the invention it is possible to search for the hydroxylase gene or its variants in genomes of any mammalian cells and tissue, preferably in such cells or tissue which are positive for the hydroxylase (e.g. liver cells and submandibular glands), to identify these and to isolate the desired gene coding for the hydroxylase.
  • Such processes and suitable standard stringent hybridization conditions are known to a person skilled in the art and are described for example by J. Sambrook (1989) (22) and B.D. Hames, S.G.
  • stringent conditions refer to hybridization in 1 mol 1 NaCl, 1% SDS and 10% dextran sulfate. This is followed by two washes of the filter at room temperature of 5 minutes in 2 x SSC and one final wash for 30 minutes. This final wash may be at 0.5 x SSC, 0.1% SDS, more preferably at 0.2 SSC, 0.1% SDS, and most preferably at 0.1 x SSC, 0.1%) SDS, final wash taking place at 65°C Those of ordinary skill in the art will recognize that other conditions will afford the same degrees of stringency and are encompassed by the phraseology "under stringent conditions" and are encompassed herein.
  • Cells and tissue which are positive for the hydroxylase can be identified by an antibody which is specific for the hydroxylase.
  • Such specific antibodies can be easily produced according to Schlenzka et al. (20) which is inco ⁇ orated herein by reference.
  • hydroxylase derivatives can for example be modified in individual or several amino acids by substitution, deletion or addition.
  • the derivatization can for example be carried out by means of site directed mutagenesis. Such variations can be easily carried out by a person skilled in the art (J. Sambrook (22), B.D. Hames (23)). It merely has to be ensured that the characteristic properties ofthe hydroxylase activity are preserved.
  • the invention therefore comprises an isolated hydroxylase which a) is a product of a prokaryotic or eukaryotic expression of an exogenous DNA, b) catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc, and c) is coded by the DNA sequence shown in SEQ ID NO:l or includes SEQ ID NO:l completely or at least 98% thereof, d) is coded by DNA sequences which hybridize under stringent conditions with SEQ ID NO.l. or e) is coded by DNA sequences which if there was no degeneracy of the genetic code, would hybridize under stringent conditions with the sequences defined in c) to d).
  • a protein is preferred which is coded by nucleotides 42 to 1307 of SEQ ID NO: 1 or by DNA sequences which due to genetic code degeneracy would code for a polypeptide with the same amino acid sequence.
  • the invention further concerns a nucleic acid molecule, which secures the expression in a prokaryotic or eukaryotic host cell of a protein with hydroxylase activity and is selected from the group comprising a) the DNA sequence shown in SEQ ID NO:l, a DNA sequence which is at least 98% homologous to SEQ ID NO:l or the complementary sequences, b) nucleic acid sequences which hybridize under stringent conditions with SEQ ID NO:l, or c) nucleic acid sequences which, if there was no degeneracy of the genetic code, would hybridize under stringent conditions with one ofthe sequences stated in a) or b).
  • the nucleic acid molecule codes for a protein which catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc.
  • nucleic acid molecule is integrated into suitable expression vectors, such as an exogenous nucleic acid molecule, according to methods familiar to a person skilled in the art for expression in prokaryotic or eukaryotic organisms, such as prokaryotic host cells or eukaryotic host cells.
  • suitable expression vectors such as an exogenous nucleic acid molecule, according to methods familiar to a person skilled in the art for expression in prokaryotic or eukaryotic organisms, such as prokaryotic host cells or eukaryotic host cells.
  • an expression vector preferably contains a regulatable/inducible promoter to which the coding sequence is operably linked.
  • suitable host cells such as e.g. E.
  • coli as a prokaryotic host cell or Saccharomyces cerevisiae, Terato carcinoma cell line PA-1 sc 9117 (B ⁇ ttner et al. (1991) (25)), insect cells, such as Sf9, and all insect cells transfected with baculovirus vector, CHO or COS cells as eukaryotic host cells and the transformed or transduced host cells are cultured under conditions which allow an expression of the heterologous gene.
  • the isolation of the protein can be carried out according to known methods from the host cell or from the culture supernatant of the host cell. Such methods are described for example by Ausubel I. and Frederick M. (1992) (26). Also in vitro reactivation of the protein may be necessary, if, for example, after expression in prokaryotes, an insoluble and inactive protein is obtained.
  • a nucleic acid molecule coding for a protein with hydroxylase activity and/or consisting ofthe nucleotides 42 to 1307 of SEQ ID NO:l is preferably used for the recombinant production of the protein according to the invention.
  • nucleic acid sequences of the hydroxylase provided by the invention which can be used to detect nucleic acid molecules which code specifically for hydroxylase.
  • a test can for example be carried out in cells or cell lysates.
  • Such a test can be carried out by means of nucleic acid diagnostics. In this case the sample to be examined is brought into contact with a probe which would hybridize with the nucleic acid molecules coding for the hydroxylase with the sequences which are specific for hydroxlyse (nucleotides 42 to 1307 of SEQ ID NO:l). A hybridization between the probe and nucleic acid molecules from the sample indicates the presence of expressed hydroxylase.
  • nucleic acid molecule ofthe sample which codes for a hydroxylase is amplified before testing, e.g. by the well-known PCR technique.
  • a derivatized (labelled) nucleic acid probe is usually used in the field of nucleic acid diagnostics.
  • This probe is brought into contact with a carrier- bound denatured DNA or RNA from the sample and in this process the temperature, ionic strength, pH value and other buffer conditions are selected in such a way that - depending on the length of the nucleic acid molecule sample and the resulting melting temperature of the expected hybrid - the labelled DNA or RNA can bind to homologous DNA or RNA (hybridization, see also J. Mol. Biol. 98 (1975), 503 (33); Proc. Natl. Acad. Sci. USA 76 (1979), 3683 (34)).
  • Suitable carriers are membranes or carrier materials based on nitrocellulose (e.g.
  • various functional groups e.g. nitro group
  • the hybridized DNA or RNA is then detected by incubating the carrier, after thorough washing and saturation to prevent unspecific binding, with an antibody or antibody fragment.
  • the antibody or antibody fragment is directed towards the substance inco ⁇ orated into the nucleic acid probe during the derivatization.
  • the antibody is in turn labelled. It is, however, also possible to use a directly labelled DNA. After incubation with the antibodies, it is washed again in order to only detect specifically bound antibody conjugates. The determination is then carried out via the label of the antibody or antibody fragment according to well-known methods.
  • the detection ofthe hydroxylase expression can be carried out for example as:
  • hydroxylase preferably is regulated on the mRNA level, it is preferred to carry out, for detecting the hydroxylase expression, a hybridization with the mRNA of the cell to be examined.
  • the invention therefore includes a specific method for the detection of nucleic acid molecules which code for a hydroxylase protein which is characterized in that the sample to be examined is incubated with a nucleic acid probe which is selected from the group comprising nucleic acid molecules or specific oligonucleotides which hybridize with the nucleotides 42 to 1307 of SEQ ID NO:l, the nucleic acid probe is incubated with the nucleic acid molecules from the sample and the hybridization of the nucleic acid molecules in the sample and nucleic acid probe is detected, if desired, via a further binding partner.
  • a nucleic acid probe which is selected from the group comprising nucleic acid molecules or specific oligonucleotides which hybridize with the nucleotides 42 to 1307 of SEQ ID NO:l
  • oligonucleotide molecules which specifically inhibit the expression of hydroxylase in mammalian cells. It has been found that an oligonucleotide molecule of about more than 15 to 17 nucleotides in length must have a unique sequence relative to the entire human genome and is therefore specific. Further, it was shown that short antisense oligonucleotides can be imported into cells and exhibit inhibition (Zamecnik et al. (1986) (58)). In particular, oligonucleotide molecules having 15 to 50, preferably 15 to 25, bases are suitable for use.
  • a further embodiment of the invention is an oligonucleotide molecule which hybridizes in a manner which is specific for nucleic acid molecules of mammalian hydroxylase with a part or all of SEQ ID NO: 1.
  • oligonucleotide molecule which is complementary to, and designed on the basis of, the above-mentioned sequences of mammalian hydroxylase genes is useful for inhibiting the expression of hydroxylase in vivo and in isolated mammalian cells.
  • hybridizes in a manner which is specific for a nucleic acid molecule of mammalian hydroxylase means that such a nucleic acid molecule or oligonucleotide molecule in mammalian cells, , especially in human cells, binds to the nucleic acid molecules which code for a hydroxylase in said cells.
  • a specific binding will be present if these nucleic acid molecules inhibit the expression of hydroxylase in a considerable manner (more than 50%, preferably more than 80%, or more than 90%) and in such fashion that the other metabolism processes of the cell are not impaired.
  • oligonucleotide molecule or a nucleic acid molecule which is to hybridize specifically with the hydroxylase nucleic acid molecule will at least in its essential part be complementary to sequences in the coding region of nucleotides 42 to 1307 of SEQ ID NO:l. Standard hybridization conditions are described in Sambrook et al. (1989) (22) as already stated.
  • a preferred oligonucleotide molecule interferes in a sequence-specific manner with processes such as the translation of hydroxylase mRNA into the protein by binding to hydroxylase mRNA.
  • Further oligonucleotide molecules which are suitable for use are oligonucleotide molecules which are complementary to genomic DNA which can interact in forming a triple helical structure (M. Cooney et al. (1988) (35) and Duvall- Valentine et al. (1992) (36)).
  • oligonucleotide derivatives such as phosphotriester, methylphosphonates, phosphorothioates or substituted oligonucleotides, such as acridine, interchalating coupled oligonucleotides or ⁇ -anomers (J.J. Toulme and C. Helene (1988) (37)) are used. Phosphorothioates and methylphosphonates are specifically preferred.
  • Such oligo derivatives can be synthesized according to the state of the art, for example by automated technology (S. Beaucage and M. Caruthers (1981) (38); G. Zon and T. Geiser (1991) (39); CA. Stein et al.
  • oligonucleotide molecules it is, in principle, possible to use naked antisense oligonucleotide molecules according to the invention, because these oligonucleotides can be taken up by cells non-specifically. However, such oligonucleotides are integrated in the cells at a low efficiency. Therefore, in general, a delivery system for antisense oligos or a targeting vector is preferred especially for in vivo use.
  • the transfection of mammalian cells in vitro, especially of hamster cells is accomplished according to the methods known in the state of the art, such methods being, for example, electroporation or microinjection.
  • the cells which are defective in hydroxylase activity are separated, for example, by single cell separation with subsequent determination of hydroxylase activity in these cells, for example, by Western blotting.
  • the invention provides mutants of mammalian cells normally (in their initial, unmodified stage) having hydroxylase activity, said mutants being defective in the hydroxylase activity.
  • Cells, which normally have hydroxylase activity mostly are non-human cells such as hamster, mouse, rat, pig cells, and hybridomas derived therefrom .
  • hydroxylase activity means that the hydroxylase activity is reduced by about 80%, preferably more than 90%, as compared with the non-mutated initial cell.
  • the determination of hydroxylase activity is accomplished, suitably, by means of an enzymatic assay as described in L. Shaw et al. (1994) (14).
  • Such hydroxylase-deficient mammalian cells are produced by transfecting said cells with a nucleic acid molecule, which hybridizes under stringent conditions in a manner which is specific for a nucleic acid molecule with SEQ ID NO: l or related RNA species, and isolating from the cell mixture at least one cell, which is deficient in said hydroxylase activity.
  • Such cells can be used preferably for the recombinant production of glycoproteins in non ⁇ human cell lines, whereby the cell-produced glycoprotein does not contain N- glycolylneuraminic acid.
  • the method according to the invention can be used for the production of glycoproteins, such as erythropoietin (EPO), colony-stimulating factors (GCSF, GMCSF, MegCSF or thrombopoietin).
  • EPO erythropoietin
  • GCSF colony-stimulating factors
  • GMCSF colony-stimulating factors
  • MegCSF thrombopoietin
  • the invention further comprises recombinant glycoproteins without attached N-glycolylneuraminic acid, substantially free, preferably completely free, of other human proteins.
  • the cells which are deficient for hydroxylase activity, are produced preferably by homologous recombination.
  • homologous recombination Such methods are described, for example, in US Patent No. 5,272,071 (75), M.R. Capecchi (1989) (76), G.Y. Wu et al. (1991) (77) and WO 91/13151 (78).
  • homologous recombination it is preferred to use a targeting vector containing as much hydroxylase homology as possible for having a high targeting frequency.
  • the targeting vector is such that, after homologous recombination, it will modify the hydroxylase gene in such a way that no longer any protein, or merely negligible amounts of protein, will be formed in the targeted cell so that the targeted cell will be deficient in hydroxylase activity.
  • a vector in which this hydroxylase sequence or part thereof is interrupted by a selectable gene such as NeoHPRT.
  • cells there are particularly preferred hamster cells, such as CHO cells, especially such cells which are deficient in the dihydrofolate reductase gene (DHFR gene).
  • DHFR gene dihydrofolate reductase gene
  • DHFR-deficient cells are described, for example, in US Patent Nos. 4,399,216 (79) and 4,634,665 (80).
  • the sequence of the hydroxylase gene is manipulated by a knock-out in the N-terminus ofthe hydroxylase gene.
  • the N-terminus ofthe hydroxylase gene is characterized by said N-terminal region, which contains the Rieske iron-sulfur center and/or the CMP-N- acetylneuraminic acid binding motif and upstream regions or is located upstream of the potential Rieske iron-sulfur center and/or the CMP-N-acetylneuraminic acid binding motif (W. Schlenzka et al. (85). It is especially preferred that the knock-out manipulation is carried out within the first 50 amino acids of the N-terminus. Such manipulation can be done by modification, deletion or insertion of nucleotides in the sequence. However, the manipulation should be such that the expression of the hydroxylase gene is reduced by 90% and more, preferably such that the expression is reduced by 98% or more.
  • the cells according to the invention contain modification in the N-terminal part of the hydroxylase gene in such a way that the hydroxylase expression is reduced as described above.
  • the targeting vector preferably contains about 5 to lO kB of the genomic DNA sequence.
  • This sequence may comprise introns and exons ofthe gene and may contain, in addition, 5'- or 3'-non-coding sequences.
  • genomic DNA from the cells to be mutated e.g. CHO
  • genomic DNA from cells of another species e.g. CHO
  • Cloning ofthe genomic DNA can be accomplished by screening of ⁇ -DNA libraries using DNA samples, which are derived from SEQ ED NO: 1.
  • the targeting vector preferably contains a selectable artificial marker.
  • a selectable artificial marker for instance, neomycinphosphotransferase (neo) which makes possible G-418 selection can be applied.
  • neo neomycinphosphotransferase
  • the marker may also be applied as a mutagen if, for instance, it is cloned into a coding exon or replaces a coding exon.
  • HSV-TK Herpes simplex thymidine kinase
  • This negative marker can be inco ⁇ orated in the targeting vector in such a way that, in the case of a homologous recombination, it will not be integrated in the DNA ofthe target cells.
  • Targeted clones are detected either by selection on the marker gene introduced or by PCR assay.
  • PCR assay two primers are used: Primer 1 is specific to the target locus and is preferably about 400 bp upstream of the 5'-end of the targeting fragment in the genome of the cell, and primer 2 is specific to the incoming DNA. Specific PCR amplification can occur only if a targeting event juxtaposes these two primers.
  • the targeted clones were isolated from the PCR-positive pools which contain about 200 independent clones, which show the marker activity. Cells from this pool are diluted into 96 smaller pools with about 10 cells in each.
  • one isolate of the targeted clone was expanded and used to prepare genomic DNA for Southern blot analysis.
  • a further subject-matter ofthe invention is a soluble complex for targeting an oligonucleotide molecule according to the invention which hybridizes in a manner which is specific for nucleic acid molecules of the hydroxylase with a part or all of SEQ ED NO:l, complexed with an oligonucleotide molecule binding agent, which complexes the oligonucleotide molecule under extracellular conditions and releases said oligonucleotide molecule under intracellular conditions as an oligonucleotide molecule specifically bindable to hydroxylase nucleic acid molecule.
  • oligonucleotides are covalently coupled to polycations, such as polylysine (M. Lemaitre et al. (1987) (43)). Further delivery systems using polycation conjugates (e.g.
  • transferrin are described in WO 92/20316 (44), USP 5,166,320 (45), WO 92/19281 (46), WO 92/13570 (47), EP-A 0 388 758 (48), WO 93/07283 (49), WO 92/17210 (50), WO 91/17773 (51), WO 93/04701 (52) and transfer peptides as specified in PCT/EP94/01147 (53) are also suitable for use.
  • the efficacy of the internalization of the nucleic acid molecules according to the invention in cells can be improved by binding the nucleic acid molecule to amphiphilic molecules, such as polyethylene glycol in a complex. Further preferred are the use of transfection reagents, such as DOTMA (WO 91/06309 (54) and WO 91/17424 (55)). Liposomes and dendromers are also useful.
  • the nucleic acid molecules according to the invention can be coupled non-covalently to conjugates from a DNA-binding substance (e.g. polycations) and/or a cell-specific ligand (e.g. protein, preferably PSA specific antibody) (Wu and Wu (1987) (56); Wu et al. (1988) (57)).
  • a DNA-binding substance e.g. polycations
  • a cell-specific ligand e.g. protein, preferably PSA specific antibody
  • internalization of the nucleic acid molecules in cells is accomplished by means of a soluble DNA carrier system consisting of a chemically synthesized conjugate comprising mannose and lactose as the ligands (P. Midoux et al. (1993) (58)).
  • EP-A 0 388 758 discloses chemically synthesized transferrin polycation conjugates which form complexes with polyanionic nucleic acid molecules. By means of the binding to the transferrin receptor these complexes can be internalized in the target cells.
  • WO 93/07283 (49) also describes, with regard to non-viral gene transfer, a "2-ligand-system” comprising a DNA- binding (polycationic) portion (substance with affinity towards nucleic acid molecules) and an internalization factor for the take-up of DNA in the cell.
  • a socalled endosomolytic agent which corresponds, for example, to a virus or a virus component (e.g. adenovirus or influenza haemagglutinin).
  • antisense oligos there are preferably selected oligos which hybridize with approximately a part or all of nucleotides 42 to 1307 of SEQ ID NO: 1.
  • the carrier for the oligonucleotide molecule is a conjugate from a cell-specific ligand and a DNA binding substance, these substances are preferred to be covalently linked and the linkage typically is a peptide bond.
  • This can be formed, for example, with a water-soluble carbodiimide as described by G. Jung et al. (1981) (63).
  • An alternative linkage is a disulfide bond.
  • the cell-specific agent can be a natural or synthetic ligand (for example, a protein polypeptide, glycoprotein, etc.) or it can be an antibody or an analogue thereof which specifically binds to a cellular surface structure which then mediates internalization of the bound complex.
  • Such antibodies are, for example, anti-CD3 or anti-CD4 antibodies. After binding, these antibodies are internalized.
  • the cell-specific binding agent is a ligand which binds to a cell-surface receptor.
  • a cell-surface receptor Preferably there are employed receptors which are specific for such tissue cells from which the tumor to be treated originates.
  • tumor antigens that are suitable for use as surface receptors are, for instance, the tumor antigens.
  • the employed cell-specific ligand acts as a substance which facilitates the internalization ofthe oligonucleotide molecules according to the invention.
  • Such internalization factors are, for example, transferrin or anti-CD4-antibody.
  • the optional ratio of the cell-specific binding agent to the oligonucleotide molecule and the oligonucleotide binding agent in the complexes can be determined empirically. When polycations are used, the molar ratio ofthe components will vary depending on the size ofthe polycation and the size of the oligonucleotide.
  • the oligonucleotide molecules and carriers are mixed and incubated under conditions conductive to complexation.
  • the oligonucleotide molecule and carrier can be mixed at the appropriate ratio in 2 mol/l NaCl and the solution can be diluted to 0.15 mol/l and filtered to provide an administerable composition.
  • the oligonucleotide molecules or the molecular complexes of this invention can be administered parenterally. Preferably, it is injected intravenously.
  • the complex is administered in solution in a physiologically acceptable vehicle.
  • Vector pWSPH.01 which contains the nucleotides 150 to 1986 of SEQ ID NO:l was deposited under the Budapest Treaty with Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM), Mascheroder Weg lb, D-38124 Braunschweig on 24 May 1995 and was accorded Accession Number DSM 10009.
  • a second vector pWSPH.03 which contains the nucleotides 1 to 211 of SEQ ID NO. l was deposited under the Budapest Treaty with Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM), Mascheroder Weg lb, D-38124 Braunschweig on 24 May 1995 and was accorded Accession Number DSM 10010.
  • Figure 1 Vectors useful for the production of hydroxylase-deficient host cells.
  • the fat line shows the vector homology to the target locus (hydroxylase gene).
  • the thin line shows the bacterial plasmid sequence (e.g. pUC).
  • the dotted rectangle represents a hydroxylase exon.
  • the positive selection marker is represented by the symbol "+”.
  • A) Replacement Vector The positive selection marker interrupts the target homology region ofthe hydroxylase gene, preferably in an upstream exon, in order to attain a zero mutant.
  • the negative selection marker is represented by the symbol "-”.
  • the replacement vector is linearized prior to transfection outside ofthe target homology region.
  • a positively selectable marker can be cloned into the hydroxylase-homologous sequence or into the vector background. A double strand break within the homologous targeting sequence is inserted prior to transfection.
  • Targeting vectors can be inserted in the production cell lines by means of electroporation.
  • SEQ ID NO:l denotes nucleotide and deduced protein sequence ofthe hydroxylase cDNA.
  • SEQ ID NO:2 denotes protein sequence deduced from cDNA.
  • the mucin and remaining particulate material in the 10,000 g supernatant were precipitated by the addition of 2% (by mass) N-cetyl-N,N,N-trimethylammonium bromide dissolved in 50 mM HEPES/NaOH (pH 7.4), (final concentration 0.2%), followed by centrifugation at 100,000 g for 1 h.
  • CMP-Neu5Ac hydroxylase was purified from this high-speed supernatant.
  • the mucin content was estimated by quantification of sialic acids using the orcinol reagent (R. Schauer et al. (1978) (82).
  • the mucin-free high-speed supernatant (1.1 1) was fractionated in a batch procedure using 300 ml Q-Sepharose slurry equilibrated with 10 mM HEPES/NaOH (pH 7.4).
  • the Q-Sepharose was sedimented by centrifugation at 75 g for 5 min.
  • Non-bound protein was removed from the Sepharose with 1.75 1 10 mM HEPES/NaOH (pH 7.4) and bound protein including hydroxylase activity was eluted with 500 ml lO mM HEPES/NaOH (pH 7.4) containing 400 mM NaCl.
  • the fractions with the greatest hydroxylase activity were pooled, concentrated and, after desalting, applied to a column of Reactive Brown 10- Agarose (1.5 x 5.5 cm) equilibrated with 50 mM HEPES/NaOH (pH 7.4) at a flow rate of 0.1 ml min. After washing with equilibration buffer, elution was performed with a 120 ml linear gradient from 0 to 2 M NaCl in equilibration buffer.
  • ammonium sulphate was added to 41% saturation and the sample applied to a column of Hexyl-Agarose (1.5 x 6.0 cm) equilibrated in 50 mM HEPES/NaOH (pH 7.4) containing ammonium sulphate at 41% saturation. Washing of the column with the equilibration buffer was followed by elution of bound protein with a 140 ml linear gradient of (NH_i)2SO4 from 41 to 0% saturation in 50 mM HEPES/NaOH (pH 7.4), the flow rate being 1 ml/min.
  • the final purification on Superose S.12 was performed using the desalted Hexyl-Agarose pool after concentration to a volume of 200 ⁇ l.
  • the Superose S.12 column was equilibrated in 50 mM HEPES/NaOH (pH 7.4) containing 100 mM NaCl and calibrated with cytochrome c (12.5 kDa), carbonic anhydrase (29 kDa), ovalbumin (45 kDa) and bovine serum albumin (66 kDa). The flow rate was 0.2 ml/min and 200 ⁇ l fractions were collected.
  • the protein concentrations were measured by the method of Bradford (1976), using Bio-Rad reagent (Bio-Rad, Kunststoff, FRG). Protein samples were concentrated by ultrafiltration on membranes with &M r cutoff of 10 or 20 kDa (Sartorius, Gottingen, FRG).
  • Samples of each purification step were analyzed by SDS-PAGE on a gel consisting of a 4% stacking gel and a 13% resolving gel.
  • oligonucleotide primers for both orientations, taking into account the codon usage in pigs, were prepared.
  • mRNA from pig submandibular glands was transcribed into single-strand cDNA.
  • PCR polymerase chain reaction
  • all possible primer combinations were investigated in the first reaction series.
  • the products resulting from these preparations were applied in a second series of PCR reactions in which the reverse primers were exchanged (nested primers). In doing so, two PCR products (96 bp and 411 bp) were obtained which suggest the following order ofthe peptides: 1, 2 and 5.
  • the PCR product having a size of 96 bp was transformed after ligation into a pUC vector by means of electroporation in E.coli cells, strain XLI blue.
  • the plasmid insert of a positive clone was sequenced.
  • the protein sequence derived therefrom contains the regions of the peptide pieces 2 and 5 that were used to prepare the primers, as well as the adjacent regions.
  • this PCR product is a part ofthe hydroxylase gene.
  • RNA of pig submandibular glands there was prepared an oligo (dt)-primed cDNA library in ⁇ -phagen ZAP II (Stratagene).
  • the 96 bp PCR product after being labelled with digoxigenin, was employed as a probe to search within this cDNA library from pig submandibular glands. In doing so, several positive clones were found; the longest of these clones, which had a length of about 1800 bp, was characterized and sequenced. In the nucleotide sequence, a reading frame of about 1270 bp, which was open at the 5' end, was found.
  • the peptide sequence derived therefrom contains all known peptide pieces of the CMP-Neu5 Ac hydroxylase. This confirms that the clone found codes for about 80% of the hydroxylase protein.
  • the DNA sequence coding for hydroxylase is modified in such fashion as to allow for efficient expression in E. coli.
  • an expression plasmid is transfected into a suitable E. coli strain.
  • suitable E. coli strains are, in the case of the use of an expression plasmid under the control of lac repressor such as the expression plasmid pl 1379, strains which possess a sufficiently high intracellular concentration of lac repressor.
  • These kinds of strains can be prepared by transfection of a second plasmid such as pREP4 (Diagen GmbH), pUBS 500 or pUBS520 (Brinckmann et al. (1989) (67)).
  • the applied E. coli strains should preferably have a low protease activity ofthe cells proper, as is the case, for instance, with E. coli UT5600 (Earhart et al.
  • hydroxylase- containing protein aggregates from E.coli fermentations are solubilized in 6 M guanidinium hydrochloride, 100 mM TrisHCl at pH 8, I mM EDTA, subsequently adjusted to a pH of 3 to 4 and dialyzed against 4 M guanidinium hydrochloride at pH 3.5.
  • the renaturing ofthe solubilized protein is then carried out in 1 M arginine at pH 8, 1 mM EDTA, 5 mM GSH (glutathione, reduced) and 0.5 mM GSSG (glutathione, oxidized).
  • hydroxylase can be obtained, for instance, after addition of 1.4 M ammonium sulfate by adso ⁇ tion to hydrophobic gel matrices such as Fractogel TSK Butyl (E. Merck, Darmstadt) and subsequent elution in 20 mM TrisHCl at pH 7.
  • hydrophobic gel matrices such as Fractogel TSK Butyl (E. Merck, Darmstadt) and subsequent elution in 20 mM TrisHCl at pH 7.
  • the cDNA is ligated into a vector in which it is transcribed into mammalian cells, on the basis of a strong promoter-enhancer system.
  • promoters and enhancers are mostly from viruses such as SV40, hCMV, polyoma or retroviruses.
  • promoter-enhancer systems which are specific to a certain cell type or tissue type, such as, for instance, WAP-, MMTV- or immune globuline promoter, or systems which are inducible, such as, for instance, metallothioneine promoter.
  • This kind of vector supplements the hydroxylase cDNA (if the latter is used) with donor and acceptor signals for RNA processing as well as a signal for poly-A-addition.
  • pCMX-pLl Umesono et al. (1991) (73)
  • pCMX-pLl Umesono et al. (1991) (73)
  • EcoRI linkers Into the one and only EcoRI cleavage site of this vector the hydroxylase cDNA provided with EcoRI linkers is ligated, wherein it is ensured by restriction analysis with the aid ofthe other cleavage sites in the polylinker of this vector that the hydroxylase cDNA is oriented in reading direction of the CMV promoter.
  • An absolutely analogous procedure is applied when cloning into other vectors, e.g.
  • the DNA of the so obtained expression plasmids is prepared from E. coli and transfected into the mammalian cells, applying techniques that are specific to the cell types in the particular case (Methods of Enzymoiogy 185 (Gene Expression Technology), ed. David V. Goeddel, Academic Press 1991, section (74)). After transfection, the cells are cultured in MEM (Gibco) without addition of fetal calf serum, whereby hydroxylase is detectable in the cell culture supernatant after 48 hours.
  • MEM Gibco
  • the fragment to be employed for hybridization was cloned in a suitable transcription vector (wit a T3, T7 or SP6 promoter).
  • a suitable transcription vector wit a T3, T7 or SP6 promoter.
  • 1 to 2 ⁇ g of the plasmid were linearized, subsequently purified by means of phenol/chloroform extraction and precipitated with ethanol.
  • the RNA was washed once with 70% ethanol, dried and then dissolved in 100 ⁇ l H2O (DEPC-treated).
  • the labelling efficiency was determined in that dilution series of the labelled sample and of a labelled control RNA were fixed on a nylon membrane and subsequently developed with the anti-DIG-F aD alkaline phosphatase conjugate as described in Example 8.
  • RNA or DNA from samples immobilized on nylon membranes was hybridized with DIG- labelled RNA probes. Both with respect to RNA and with respect to DNA, the hybridization was carried out under identical conditions, except for the lower hybridization temperature in the case ofthe DNA-RNA hybridizations.
  • the membranes were first of all pre-hybridized in hybridizing buffer (50% formamide, 50 mM sodium phosphate pH 7.0, 7% SDS, 0.1% N-lauroylsarcosine, 5xSSC, 2% blocking reagent (Boehringer Mannheim) for 1 to 2 hours (65°C in the case ofthe RNA-RNA and 50°C in the case of the DNA-RNA hybridizations).
  • the hybridization with the DIG-labelled probe was carried out for 16 to 90 hours and also at 65°C and 50°C, respectively. Immediately beforehand, the probe was heated to 98°C for 5 minutes and subsequently cooled on ice. After hybridization, the membrane was washed twice for 5 minutes in 2xSSC, 0.1% SDS (at ambient temperature) and twice for 15 minutes in O.lxSSC, 0.1% SDS (at 65°C).
  • the detection ofthe hybridized probe was carried out applying the following procedure:
  • the membrane together with the substrate solution (CSPD [di-sodium-3-(4- methoxyspiro ⁇ l,2-dioxetane-3,2'-(5 , -chloro)tricyclo[3.3.1.1 ⁇ ' ⁇ ]decan ⁇ -4-yl)phenylphosphate] diluted at a ratio of 1:100 in buffer 3
  • CSPD di-sodium-3-(4- methoxyspiro ⁇ l,2-dioxetane-3,2'-(5 , -chloro)tricyclo[3.3.1.1 ⁇ ' ⁇ ]decan ⁇ -4-yl)phenylphosphate
  • Oligonucleotides and PLL conjugates are prepared according to J.P. Leonetti et al., Gene 72 (1988) 323-332.
  • ⁇ -anomeric oligodesoxynucleotide molecules (15-20mer) complementary to nucleotides of SEQ ED NO:l were synthesized on a Biosearch Cyclone DNA synthesizer using a phosphoramidite method.
  • random oligonucleotide molecules having the same length were prepared in identical fashion.
  • the purity of oligonucleotide molecules was determined by electrophoresis through 15% polyacrylamide gels stained with etidium bromide. Preparation of an adenosine-derivatized support
  • the glass beads were suspended in a capping solution (24 ml) made from acetic anhydride (0.186 ml, 1.98 mmol), 2,6-lutidine (0.198 ml, 1.71 mmol) and 4-dimethylaminopyridine (1.8 g, 14.7 mmol) in anhydrous tetrahydrofuran (30 ml). The mixture was stirred for 10 min and the glass beads were collected by suction, washed with tetrahydrofuran (2 x 20 ml) and methylene chloride (4 x 20 ml) and dried.
  • a capping solution 24 ml
  • acetic anhydride 0.186 ml, 1.98 mmol
  • 2,6-lutidine 0.198 ml, 1.71 mmol
  • 4-dimethylaminopyridine 1.8 g, 14.7 mmol
  • the ( ⁇ )-anomeric oligos (80 nmol) in 100 ⁇ m of 20 mM Na acetate (pH 4.4) were oxidized with 4.6 ⁇ mol Na metaperiodate for 30 min at 0°C in the dark.
  • An equal volume of PLL (mean 14-kDa, Sigma) 80 nmol in 2 M NaCl, 0.2 M Na borate buffer (pH 8.4) and 100 ⁇ mol sodium cyanoborohydride were added.
  • the mixture was incubated overnight at 20°C and then loaded on a Sephadex G-50 column equilibrated with 0.5 M NaCl, 20 mM Na acetate buffer (pH 6.0). Each fraction was assayed for its oligo-PLL content by absorbance at 260 nm and by the BCA protein assay (from Pierce).
  • the conjugates were stored at -80°C
  • Hydroxylase-positive CHO-wt cells were incubated with 0.9 ⁇ g oligo-PLL conjugate. Hydroxylase activity was measured according to W. Schlenzka et al. (1994) (20). Cell extracts were added at 37°C to a mixture of 50 mM HEPES/NaOH (pH 7.4) at 37°C in the presence of 1 mM NADH, 0.5 mM FeSO 4 , 10 ⁇ M CMP-[4,5,6,7,8,9-- 14 C]Neu5Ac and pig liver microsomes (-20 ⁇ g protein in the test) solubilized in Triton X-100 (1.3%, by mass), the final volume of an assay being 30 ⁇ l.
  • Solubilized microsomes were used as a source of cytochrome b5 and cytochrome b5 reductase L. Shaw et al. (1994) (14).
  • the assays performed in duplicate, were stopped by the addition of 5 ⁇ l 1 M trichloroacetic acid.
  • the precipitated material was removed by centrifugation and released [ ⁇ C] sialic acids were analysed using radio TLC (L. Shaw and R. Schauer (1989) (83).
  • EPO Erythropoietin
  • Hydroxylase-deficient CHO cells are prepared by transfection of CHO wild-type cells with a replacement or insertion vector according to Figure 1.
  • DNA (20 ⁇ g) from the plasmid pPTFL13 described in Example 6 of EP-B 0 205 564 was digested with the restriction endonuclease Cla I to linearize the plasmid and was ligated to Cla I-digested DNA from the plasmid pAdD26SVp(A) 1 (2 ⁇ g) which contains an intact dihydrofolate reductase (DHFR) gene driven by an adenovirus major late promoter (Kaufman and Sharp (1982) (21).
  • DHFR dihydrofolate reductase
  • This ligated DNA was used to transfect DHFR-negative CHO cells and following growth for two days, cells which incorporated at least one DHFR gene were selected in alpha media lacking nucleotides and supplemented with 10% dialyzed fetal bovine serum. Following growth for two weeks in selective media, colonies were removed from the original plates, pooled into groups of 10 to 100 colonies per pool, replated and grown to confluence in alpha media lacking nucleotides. The supernatant media from the pools grown prior to methotrexate selection were assayed for EPO by RIA. Pools which showed positive EPO production were grown in the presence of methotraxate (0.02 uM) and then subcloned and reassayed.
  • a subclone was subjected to stepwise selection in increasing concentrations of MTX according to EP-B 0 205 564 (which is inco ⁇ orated herein by reference).
  • Such a subclone can be used for the production of EPO; EPO can be purified from cell supernatant by applying different standard chromatographic techniques as described, for instance, in EP-B 0 209 539 (64).
  • Determination of the sialic acid is carried out by enzymatically splitting the sialic acid and subsequently performing chromatographic determination of the sialic acid by means of "Dionex-HPEAC".
  • Detection is carried out with an amperometric detector (PAD; Dionex Co ⁇ ., Sunnyvale, USA) in line with the HPEAC. Separation of Neu5Ac and Neu5Gc is achieved with a linear gradient using 100 mM NaOH (eluent A) and 500 mM sodium acetate (eluent B). Eluent B is increased from 0% to 100% in 40 minutes. NeuAc elutes before Neu5Gc does under these conditions and both sialic acids can be quantified using Neu5Ac and Neu5Gc as standards (concentration: 1 to 10 nmol for Neu5Ac and 0.05 to 0.5 nmol for Neu5Gc). The PAD setting for the detection of Neu5Ac 8s 3000 nA and for Neu5Gc, 100 nA.
  • PAD amperometric detector
  • GGT GGA AAA TTT ACT GAG GAA TGG AAA GCC CAA TTC ATT AAA ACA GAA 581 Gly Gly Lys Phe Thr Glu Glu Trp Lys Ala Gin Phe Ile Lys Thr Glu 165 170 175 180
  • AGAATTTATT GCTGCTACGT CAAAGCTTAT ACCAGAGATT ATGCCTTATA GACATTAGCA 1417 ATGGATAATT ATATGTTGCA CTTGTGAAAT GTGCACATAT CCTGTTTATG AATCACCACA 1477 TAGCCAGATT ATCAATATTT TACTTATTTC GTAAAAAATC CACAATTTTC CATAACAGAA 1537 TCAACGTGTG CAATAGGAAC AAGATTGCTA TGGAAAACGA GGGTAACAGG AGGAGATATT 1597 AATCCAAGCA TAGAAGAAAT AGACAAATGA GGGGCCATAA GGGGAATATA GGGAAGAGAA 1657

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Abstract

An isolated protein substantially free of contamination with cytochrome b5 and cytochrome b5 reductase, which a) is a product of a prokaryotic or eukaryotic expression of an exogenous DNA, b) catalyzes the conversion of CMP-Neu5A to CMP-Neu5Gc; and c) is coded by the DNA sequence shown in SEQ ID NO:1 or comprises SEQ ID NO:1 completely or at least 98 % thereof; d) is coded by DNA sequences, which hybridize with SEQ ID NO:1 under stringent conditions; or e) is coded by DNA sequences, which, if there was no degeneracy of the genetic code, would hybridize under stringent conditions with the sequences defined in c) to d), is useful for the production of CMP-N-acetylneuramic acid hydroxylase-deficient cells. Such cells are preferably used for the production of recombinant proteins lacking N-glycolylneuraminic acid side chains.

Description

Nucleic acid coding for CMP-N-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins
Introduction
Sialic acids are a group of about 30 naturally occurring acidic sugars all of which are derived, in terms of structure, from N-acetyl-neuraminic acid (Neu5Ac) which is the most common sialic acid (R. Schauer (1985) (I)) and A. Varki (1992a) (2)). In most cases, they are located in the terminal position in the glycan chains of glycoconjugates. On account of this exposed position, they play an important role in cellular recognition, e.g. in the case of inflammatory reactions, maturation of immune cells, differentiation processes, hormone-, pathogen- and toxin binding (R. Schauer (1985) (1) and A. Varki (1992b) (3)). Also the biological effectiveness of glycoprotein hormones, such as, for instance, erythropoietin, is influenced by sialic acids (N. Imai et al. (1990) (4)).
N-glycolylneuraminic acid (Neu5Gc) is distinguished from Neu5Ac by an additional hydroxyl group at the C5-N-acetyl residue. Neu5Gc is present in most animal groups having sialoglycoconjugates, the amount being specific with respect to type, tissue and development (A.P. Corfield and R. Schauer (1982) (5); G. Reuter et al. (1988) (6) and D. Bouhours and J.-F. Bouhours (1983) (7)). Interestingly, Neu5Gc does not occur in healthy human and chicken tissues. Here Neu5Gc-containing glycoconjugates act as antigens and may induce the formation of antibodies. Historically, they are referred to as Hanganutziu-Deicher antigens and antibodies (H. Deicher (1926) (8)). Hanganutziu-Deicher antigens were detectable in a great number of human tumors (colon carcinoma, retinoblastoma, melanoma and carcinoma of the breast) as well as in chicken tumor tissues (H. Higashi et al. (1985) (9) and H. Higashi (1990) (10)). Although these amounts were very small (usually less than 1% of the total amount of sialic acid, often in the range of from 0.01 to 0.1%), they were capable of inducing the formation of Hanganutziu-Deicher antibodies (T. Higashihara (1991) (11)).
The biosynthesis of Neu5Gc occurs on the level of the CMP sialic acids through CMP- Neu5Ac hydroxylase (cytidine monophospho-N-acetylneuramic acid hydroxylase). This enzyme catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc in the presence of molecular oxygen and NADH (L. Shaw and R. Schauer (1988) (12)). The electrons for the reductive activation of the oxygen are passed to the hydroxylase via an electron transport chain consisting of cytochrome b5 reductase and cytochrome b5 (Y. Kozutsumi et al. (1990) (13) and L. Shaw et al. (1994) (14)).
The formation of CMP-Neu5Gc takes place in cytoplasm. The proteins which take up CMP sialic acids in the Golgi apparatus (A. Lepers et al. (1989) (15)) and transfer them to resultant glycoconjugates (H.-H. Higa and J.C. Paulson (1985) (16)) accept both CMP sialic acids equally as a substrate. Hence the ratio of Neu5Ac and Neu5Gc in the glycoconjugates produced by the cells corresponds to the ratio of the respective CMP sialic acids in cytosol. The latter is dependent on the activity ofthe CMP-Neu5Ac hydroxylase.
The CMP-Neu5Ac hydroxylase has to date been isolated from mouse liver and pig submandibular glands to homogeneity and characterized (T. Kawano et al. (1994) (18), P. Schneckenburger et al. (1994) (19) and W. Schlenzka et al. (1994) (20)). The purification of the enzyme from pig submandibular glands was carried out using ion exchange chromatography, chromatography with immobilized triazin dyes, hydrophobic interaction chromatography and gel filtration (W. Schlenzka et al. (1994) (20)). The hydroxylase from mouse liver has been isolated in two different ways (P. Schneckenburger et al. (1994) (19)). The protein and DNA sequences of hydroxylase from mouse are described in JP-A 06 113838 (T. Kawano) (84). From pig submandibular glands, due to the fact that the tissue is better accessible, larger amounts of enzyme can be isolated. From 500 g of tissue about 200 μg of hydroxylase protein can be obtained.
Both the CMP-Neu5Ac hydroxylase from pig submandibular glands and the one from mouse liver are soluble monomers having a molecular weight of 65 kDa. Their catalytic interactions with CMP-Neu5Ac and cytochrome b5 are very similar to one another. The activity of both these enzymes seems to be dependent on an iron-containing prosthetic group.
Antibodies that are directed against this 65 kDa protein from pig submandibular glands inhibit the CMP-Neu5Ac hydroxylase activity and, in Western blotting, exhibit a strong cross- reaction with the purified enzyme from mouse liver.
For the production of recombinant glycoproteins, mammalian cells are needed, because only in mammalian cells a complex glycosylation of proteins will take place. Non-human cell lines, especially hamster cells, exhibit considerable advantages with regard to the preparation of recombinant glycoconjugates (well characterized, high productivity). Therefore, human glycoproteins intended for therapeutic application often are prepared in CHO (Chinese hamster ovary) cells in which glycosylation ofthe proteins proceeds largely in the same way as glycosylation in human cells. A difference arises, however, in sialylation: Neu5Gc is inserted in a small amount (up to 3% of the total sialic acids) in correspondence with the normal glycosylation of these hamster cells (CH. Hokke et al. (1990) (17)), whereas human glycoproteins do not contain any Neu5Gc, at least not in amounts detectable.
Proteins used for therapeutic application should, in particular in the case of long-term therapy, contain, on the corresponding glycoproteins and glycoconjugates respectively (proteoglycans, glycolipids), substantially no epitopes that do not occur in humans. The invention provides such recombinant proteins and methods for their production.
T. Kawano et al. (18) describe that CMP-NeuAc hydroxylase would be a rate-limiting factor regulating the expression of NeuGc-containing glycoconjugates through the production of CMP-NeuGc. NeuGc-containing glycoconjugates are antigenic to man, and it has been reported that some human recombinant proteins produced by Chinese hamster ovary cells contain NeuGc (CH. Hokke (17)). Kawano state further that it would be ideal if NeuGc could be replaced by NeuAc in the recombinant proteins and this will be achieved by manipulating the components involved in the CMP-NeuAc hydroxylation system or the genes encoding the components in CHO cells. Kawano does however note describe how and which components of the CMP-NeuAc hydroxylase system are useful for efficient reduction of NeuGc glycosylation or which genes should be manipulated in order to achieve this result.
Summary of the invention
A subject-matter of the invention therefore is a method of producing mammalian cells which are defective in the hydroxylase activity, such cells, and the use of such cells for the production of recombinant protein. It has, surprisingly, been found that for effective production of hydroxylase-deficient mammalian cell it is necessary to perform a knock-out of the hydroxylase gene in the N-terminal region of said gene. Manipulating the gene of hydroxylase in other regions, manipulating the regulatory sequences, or manipulating the other components of the hydroxylase system (cytochrome b5 and cytochrome b5 reductase) does not result in an effective reduction of NeuGc glycosylation.
One subject-matter ofthe invention is the molecular cloning ofthe CMP-Neu5Ac hydroxylase (also referred to hereinafter as "hydroxylase") and the isolation of nucleic acid molecules which encode said enzyme. Specifically preferred are nucleic acid molecules which hybridize to SEQ ID NO:l under stringent conditions as set forth below or comprise SEQ ED NO:l completely or at least 98% thereof. Nucleic acid molecules encoding the enzyme satisfy this criterion. In reconstitution experiments it has been shown that the recombinant hydroxylase is able to catalyze the conversion of CMP-Neu5 Ac to CMP-Neu5Gc in vivo and in isolated cells and cell lines. Furthermore, the soluble recombinant hydroxylase is active in vitro.
A further subject-matter of the invention is a method of detecting nucleic acid molecules which code specifically for hydroxylase proteins. Preferably detected are DNA and mRNA species. Useful probes are nucleic acid molecules which bind specifically under the conditions of the test method applied, e.g. in situ hybridization, colony hybridization, Northern hybridization, or related techniques.
A further subject-matter of the invention is an oligonucleotide molecule which is complementary to a nucleic acid molecule of hydroxylase occurring in mammalian cells. Such oligonucleotide molecules which have, in general, about 15 to 50 bases for being specific, are useful for inhibiting expression of hydroxylase, preferably on the DNA or mRNA level. Such oligonucleotide molecules are useful as antisense agents in the treatment of tumor therapy, especially in the treatment and prevention of metastases.
A further subject-matter of the invention is a nucleic acid molecule, which inhibits the expression of hydroxylase in a host cell by altering the hydroxylase gene, preferably by homologous recombination, in such a way that proteins with hydroxylase activity are not expressed in said host cell in an amount which is sufficient for a detectable Neu5Gc glycosylation of recombinant proteins produced in said host cell.
A further subject-matter of the invention is a method for the production of recombinant glycoproteins in mammalian cells wherein a mammalian cell is transfected with a nucleic acid molecule, which secures expression of said desired glycoprotein, culturing the cells, recovering the protein from the cell or the cell supernatant, characterized in that as a mammalian cell there is used a mammalian cell with no detectable Neu5Gc glycosylation (hydroxylase deficient), preferably in a cell in which the gene encoding CMP-Neu5Ac hydroxylase is inactivated, as well as such cells and so produced recombinant glycoproteins. Detailed description of the invention
The invention comprises a recombinant protein having hydroxylase activity. The protein can be defined by its DNA sequence and by the amino acid sequence derived therefrom (see, e.g., SEQ ID NO:2). The hydroxylase protein can occur in natural allelic variations which differ from individual to individual. Such variations of the amino acids are usually amino acid substitutions. However, they may also be deletions, insertions or additions of amino acids to the total sequence. The hydroxylase protein according to the invention - depending, both in respect of the extent and type, on the cell and cell type in which it is expressed - can be in glycosylated or non-glycosylated form.
The term "hybridize" denotes a binding of such a sequence to SEQ ID NO: l under standard stringent hybridization conditions as set forth below.
The hydroxylase can now be produced by recombinant means. Non-glycosylated hydroxylase is obtained when it is produced recombinantly in prokaryotes. With the aid ofthe nucleic acid sequences provided by the invention it is possible to search for the hydroxylase gene or its variants in genomes of any mammalian cells and tissue, preferably in such cells or tissue which are positive for the hydroxylase (e.g. liver cells and submandibular glands), to identify these and to isolate the desired gene coding for the hydroxylase. Such processes and suitable standard stringent hybridization conditions are known to a person skilled in the art and are described for example by J. Sambrook (1989) (22) and B.D. Hames, S.G. Higgins (1985) (23). In this case the standard protocols described in these publications are usually used for the experiments. Particular reference is made to section IX, "Hybridization of radiolabeled probes to immobilized nucleic acid", page 947-962 with regard to the hybridization of nucleic acid molecules, and to section XI, page 1145-1161, "Condition for hybridization of oligonucleotide probes" with regard to the hybridization of oligonucleotide probes, both quotations being incoφorated herein by reference. Standard stringent conditions are also described, for example, by Hόltke and Kessler (1990) (24).
More specifically, stringent conditions as used herein refer to hybridization in 1 mol 1 NaCl, 1% SDS and 10% dextran sulfate. This is followed by two washes of the filter at room temperature of 5 minutes in 2 x SSC and one final wash for 30 minutes. This final wash may be at 0.5 x SSC, 0.1% SDS, more preferably at 0.2 SSC, 0.1% SDS, and most preferably at 0.1 x SSC, 0.1%) SDS, final wash taking place at 65°C Those of ordinary skill in the art will recognize that other conditions will afford the same degrees of stringency and are encompassed by the phraseology "under stringent conditions" and are encompassed herein.
Cells and tissue which are positive for the hydroxylase can be identified by an antibody which is specific for the hydroxylase. Such specific antibodies can be easily produced according to Schlenzka et al. (20) which is incoφorated herein by reference.
The use of recombinant DNA technology enables the production of numerous hydroxylase derivatives. Such derivatives can for example be modified in individual or several amino acids by substitution, deletion or addition. The derivatization can for example be carried out by means of site directed mutagenesis. Such variations can be easily carried out by a person skilled in the art (J. Sambrook (22), B.D. Hames (23)). It merely has to be ensured that the characteristic properties ofthe hydroxylase activity are preserved.
The invention therefore comprises an isolated hydroxylase which a) is a product of a prokaryotic or eukaryotic expression of an exogenous DNA, b) catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc, and c) is coded by the DNA sequence shown in SEQ ID NO:l or includes SEQ ID NO:l completely or at least 98% thereof, d) is coded by DNA sequences which hybridize under stringent conditions with SEQ ID NO.l. or e) is coded by DNA sequences which if there was no degeneracy of the genetic code, would hybridize under stringent conditions with the sequences defined in c) to d).
A protein is preferred which is coded by nucleotides 42 to 1307 of SEQ ID NO: 1 or by DNA sequences which due to genetic code degeneracy would code for a polypeptide with the same amino acid sequence.
The invention further concerns a nucleic acid molecule, which secures the expression in a prokaryotic or eukaryotic host cell of a protein with hydroxylase activity and is selected from the group comprising a) the DNA sequence shown in SEQ ID NO:l, a DNA sequence which is at least 98% homologous to SEQ ID NO:l or the complementary sequences, b) nucleic acid sequences which hybridize under stringent conditions with SEQ ID NO:l, or c) nucleic acid sequences which, if there was no degeneracy of the genetic code, would hybridize under stringent conditions with one ofthe sequences stated in a) or b).
Preferably, the nucleic acid molecule codes for a protein which catalyzes the conversion of CMP-Neu5Ac to CMP-Neu5Gc.
With the aid of these nucleic acid molecules the protein according to the invention can be obtained in a reproducible manner and in large amounts. For this the nucleic acid molecule is integrated into suitable expression vectors, such as an exogenous nucleic acid molecule, according to methods familiar to a person skilled in the art for expression in prokaryotic or eukaryotic organisms, such as prokaryotic host cells or eukaryotic host cells. Such an expression vector preferably contains a regulatable/inducible promoter to which the coding sequence is operably linked. These recombinant vectors are then introduced for the expression into suitable host cells such as e.g. E. coli as a prokaryotic host cell or Saccharomyces cerevisiae, Terato carcinoma cell line PA-1 sc 9117 (Bϋttner et al. (1991) (25)), insect cells, such as Sf9, and all insect cells transfected with baculovirus vector, CHO or COS cells as eukaryotic host cells and the transformed or transduced host cells are cultured under conditions which allow an expression of the heterologous gene. The isolation of the protein can be carried out according to known methods from the host cell or from the culture supernatant of the host cell. Such methods are described for example by Ausubel I. and Frederick M. (1992) (26). Also in vitro reactivation of the protein may be necessary, if, for example, after expression in prokaryotes, an insoluble and inactive protein is obtained.
A nucleic acid molecule coding for a protein with hydroxylase activity and/or consisting ofthe nucleotides 42 to 1307 of SEQ ID NO:l is preferably used for the recombinant production of the protein according to the invention.
It is possible to provide a test on the basis of the nucleic acid sequences of the hydroxylase provided by the invention which can be used to detect nucleic acid molecules which code specifically for hydroxylase. Such a test can for example be carried out in cells or cell lysates. Such a test can be carried out by means of nucleic acid diagnostics. In this case the sample to be examined is brought into contact with a probe which would hybridize with the nucleic acid molecules coding for the hydroxylase with the sequences which are specific for hydroxlyse (nucleotides 42 to 1307 of SEQ ID NO:l). A hybridization between the probe and nucleic acid molecules from the sample indicates the presence of expressed hydroxylase. Such methods are known to a person skilled in the art and are for example described in WO 89/06698 (27), EP-A 0 200 362 (28), USP 2,915,082 (29), EP-A 0 063 879 (30), EP-A O 173 251 (31), EP-A O 128 018 (32). In a preferred embodiment of the invention, the nucleic acid molecule ofthe sample which codes for a hydroxylase is amplified before testing, e.g. by the well-known PCR technique. A derivatized (labelled) nucleic acid probe is usually used in the field of nucleic acid diagnostics. This probe is brought into contact with a carrier- bound denatured DNA or RNA from the sample and in this process the temperature, ionic strength, pH value and other buffer conditions are selected in such a way that - depending on the length of the nucleic acid molecule sample and the resulting melting temperature of the expected hybrid - the labelled DNA or RNA can bind to homologous DNA or RNA (hybridization, see also J. Mol. Biol. 98 (1975), 503 (33); Proc. Natl. Acad. Sci. USA 76 (1979), 3683 (34)). Suitable carriers are membranes or carrier materials based on nitrocellulose (e.g. Schleicher and Schull, BA 85, Amersham Hybond, C.) reinforced or bound nitrocellulose in a powder form or nylon membranes derivatized with various functional groups (e.g. nitro group) (e.g. Schleicher and Schull, Nytran; NEN, Gene Screen; Amersham Hybond M.; Pall Biodyne).
The hybridized DNA or RNA is then detected by incubating the carrier, after thorough washing and saturation to prevent unspecific binding, with an antibody or antibody fragment. The antibody or antibody fragment is directed towards the substance incoφorated into the nucleic acid probe during the derivatization. The antibody is in turn labelled. It is, however, also possible to use a directly labelled DNA. After incubation with the antibodies, it is washed again in order to only detect specifically bound antibody conjugates. The determination is then carried out via the label of the antibody or antibody fragment according to well-known methods.
The detection ofthe hydroxylase expression can be carried out for example as:
- in situ hybridization with immobilized whole cells using immobilized tissue smears and isolated metaphase chromosomes, colony hybridization (cells) and plaque hybridization (phages and viruses),
- Northern hybridization (RNA detection),
- serum analysis (e.g. cell type analysis of cells in serum by slot-blot analysis),
- after amplification (e.g. PCR technique). Since hydroxylase preferably is regulated on the mRNA level, it is preferred to carry out, for detecting the hydroxylase expression, a hybridization with the mRNA of the cell to be examined.
The invention therefore includes a specific method for the detection of nucleic acid molecules which code for a hydroxylase protein which is characterized in that the sample to be examined is incubated with a nucleic acid probe which is selected from the group comprising nucleic acid molecules or specific oligonucleotides which hybridize with the nucleotides 42 to 1307 of SEQ ID NO:l, the nucleic acid probe is incubated with the nucleic acid molecules from the sample and the hybridization of the nucleic acid molecules in the sample and nucleic acid probe is detected, if desired, via a further binding partner.
As the abnormal activation of an otherwise dormant hydroxylase gene is found in mammalian tumors, such an assay is a valuable test in tumor diagnosis.
Another feature of the invention are oligonucleotide molecules which specifically inhibit the expression of hydroxylase in mammalian cells. It has been found that an oligonucleotide molecule of about more than 15 to 17 nucleotides in length must have a unique sequence relative to the entire human genome and is therefore specific. Further, it was shown that short antisense oligonucleotides can be imported into cells and exhibit inhibition (Zamecnik et al. (1986) (58)). In particular, oligonucleotide molecules having 15 to 50, preferably 15 to 25, bases are suitable for use.
A further embodiment of the invention is an oligonucleotide molecule which hybridizes in a manner which is specific for nucleic acid molecules of mammalian hydroxylase with a part or all of SEQ ID NO: 1.
Therefore, such an oligonucleotide molecule which is complementary to, and designed on the basis of, the above-mentioned sequences of mammalian hydroxylase genes is useful for inhibiting the expression of hydroxylase in vivo and in isolated mammalian cells.
The term "hybridizes in a manner which is specific for a nucleic acid molecule of mammalian hydroxylase" means that such a nucleic acid molecule or oligonucleotide molecule in mammalian cells, , especially in human cells, binds to the nucleic acid molecules which code for a hydroxylase in said cells. A specific binding will be present if these nucleic acid molecules inhibit the expression of hydroxylase in a considerable manner (more than 50%, preferably more than 80%, or more than 90%) and in such fashion that the other metabolism processes of the cell are not impaired.
An oligonucleotide molecule or a nucleic acid molecule which is to hybridize specifically with the hydroxylase nucleic acid molecule will at least in its essential part be complementary to sequences in the coding region of nucleotides 42 to 1307 of SEQ ID NO:l. Standard hybridization conditions are described in Sambrook et al. (1989) (22) as already stated.
A preferred oligonucleotide molecule interferes in a sequence-specific manner with processes such as the translation of hydroxylase mRNA into the protein by binding to hydroxylase mRNA. Further oligonucleotide molecules which are suitable for use are oligonucleotide molecules which are complementary to genomic DNA which can interact in forming a triple helical structure (M. Cooney et al. (1988) (35) and Duvall- Valentine et al. (1992) (36)).
As the antisense oligonucleotide molecules, preferably oligonucleotide derivatives, such as phosphotriester, methylphosphonates, phosphorothioates or substituted oligonucleotides, such as acridine, interchalating coupled oligonucleotides or α-anomers (J.J. Toulme and C. Helene (1988) (37)) are used. Phosphorothioates and methylphosphonates are specifically preferred. Such oligo derivatives can be synthesized according to the state of the art, for example by automated technology (S. Beaucage and M. Caruthers (1981) (38); G. Zon and T. Geiser (1991) (39); CA. Stein et al. (1991) (40); P. Miller (1991) (41)). Especially phosphothioates and methylphosphonates are oligos which are useful, because they are resistant against serum and intracellular nucleases. Further useful antisense oligonucleotides which are nuclease- resistant are described in P.S. Miller et al. (1985) (42).
It is, in principle, possible to use naked antisense oligonucleotide molecules according to the invention, because these oligonucleotides can be taken up by cells non-specifically. However, such oligonucleotides are integrated in the cells at a low efficiency. Therefore, in general, a delivery system for antisense oligos or a targeting vector is preferred especially for in vivo use.
The transfection of mammalian cells in vitro, especially of hamster cells, is accomplished according to the methods known in the state of the art, such methods being, for example, electroporation or microinjection. After transfection, the cells which are defective in hydroxylase activity are separated, for example, by single cell separation with subsequent determination of hydroxylase activity in these cells, for example, by Western blotting. By this method, the invention provides mutants of mammalian cells normally (in their initial, unmodified stage) having hydroxylase activity, said mutants being defective in the hydroxylase activity. Cells, which normally have hydroxylase activity, mostly are non-human cells such as hamster, mouse, rat, pig cells, and hybridomas derived therefrom .
The term "defective in the hydroxylase activity" means that the hydroxylase activity is reduced by about 80%, preferably more than 90%, as compared with the non-mutated initial cell. The determination of hydroxylase activity is accomplished, suitably, by means of an enzymatic assay as described in L. Shaw et al. (1994) (14). Such hydroxylase-deficient mammalian cells are produced by transfecting said cells with a nucleic acid molecule, which hybridizes under stringent conditions in a manner which is specific for a nucleic acid molecule with SEQ ID NO: l or related RNA species, and isolating from the cell mixture at least one cell, which is deficient in said hydroxylase activity.
Such cells can be used preferably for the recombinant production of glycoproteins in non¬ human cell lines, whereby the cell-produced glycoprotein does not contain N- glycolylneuraminic acid. The method according to the invention can be used for the production of glycoproteins, such as erythropoietin (EPO), colony-stimulating factors (GCSF, GMCSF, MegCSF or thrombopoietin). The invention further comprises recombinant glycoproteins without attached N-glycolylneuraminic acid, substantially free, preferably completely free, of other human proteins.
The cells, which are deficient for hydroxylase activity, are produced preferably by homologous recombination. Such methods are described, for example, in US Patent No. 5,272,071 (75), M.R. Capecchi (1989) (76), G.Y. Wu et al. (1991) (77) and WO 91/13151 (78). For homologous recombination it is preferred to use a targeting vector containing as much hydroxylase homology as possible for having a high targeting frequency. The targeting vector is such that, after homologous recombination, it will modify the hydroxylase gene in such a way that no longer any protein, or merely negligible amounts of protein, will be formed in the targeted cell so that the targeted cell will be deficient in hydroxylase activity.
It is especially preferred to use a vector in which this hydroxylase sequence or part thereof is interrupted by a selectable gene, such as NeoHPRT. As cells there are particularly preferred hamster cells, such as CHO cells, especially such cells which are deficient in the dihydrofolate reductase gene (DHFR gene). Such DHFR-deficient cells are described, for example, in US Patent Nos. 4,399,216 (79) and 4,634,665 (80). Most preferably, the sequence of the hydroxylase gene is manipulated by a knock-out in the N-terminus ofthe hydroxylase gene. The N-terminus ofthe hydroxylase gene is characterized by said N-terminal region, which contains the Rieske iron-sulfur center and/or the CMP-N- acetylneuraminic acid binding motif and upstream regions or is located upstream of the potential Rieske iron-sulfur center and/or the CMP-N-acetylneuraminic acid binding motif (W. Schlenzka et al. (85). It is especially preferred that the knock-out manipulation is carried out within the first 50 amino acids of the N-terminus. Such manipulation can be done by modification, deletion or insertion of nucleotides in the sequence. However, the manipulation should be such that the expression of the hydroxylase gene is reduced by 90% and more, preferably such that the expression is reduced by 98% or more.
Therefore, the cells according to the invention contain modification in the N-terminal part of the hydroxylase gene in such a way that the hydroxylase expression is reduced as described above.
The targeting vector preferably contains about 5 to lO kB of the genomic DNA sequence. This sequence may comprise introns and exons ofthe gene and may contain, in addition, 5'- or 3'-non-coding sequences. Preferably, genomic DNA from the cells to be mutated (e.g. CHO) is used. With a corresponding homology, there may also be used, however, genomic DNA from cells of another species. Cloning ofthe genomic DNA can be accomplished by screening of λ-DNA libraries using DNA samples, which are derived from SEQ ED NO: 1.
Further, the targeting vector preferably contains a selectable artificial marker. To accomplish a positive selection, for instance, neomycinphosphotransferase (neo) which makes possible G-418 selection can be applied. With the use of this marker it is possible to isolate cells containing the targeting vector DNA. The marker may also be applied as a mutagen if, for instance, it is cloned into a coding exon or replaces a coding exon.
To accomplish a negative selection, for instance, the Herpes simplex thymidine kinase (HSV-TK) which effects an Acyclovir or Ganciclovir sensitivity can be used. This negative marker can be incoφorated in the targeting vector in such a way that, in the case of a homologous recombination, it will not be integrated in the DNA ofthe target cells.
Two types of targeting vectors are applied: Replacement vectors or insertion vectors. They are distinct in their structure and, after homologous recombination, result in different integration products (A.L. Joyner (1993) (81)). These two vectors are represented schematically in Figure 1.
As methods for the targeting into the hydroxylase gene of cells, microinjection or electroporation are preferred. Targeted clones are detected either by selection on the marker gene introduced or by PCR assay. For this PCR assay, two primers are used: Primer 1 is specific to the target locus and is preferably about 400 bp upstream of the 5'-end of the targeting fragment in the genome of the cell, and primer 2 is specific to the incoming DNA. Specific PCR amplification can occur only if a targeting event juxtaposes these two primers. The targeted clones were isolated from the PCR-positive pools which contain about 200 independent clones, which show the marker activity. Cells from this pool are diluted into 96 smaller pools with about 10 cells in each. After expansion, these smaller pools were rescreened by PCR for the presence ofthe targeting event. Positive signals now corresponded to mixtures having one targeted cell for every 10 non-targeted cells. One ofthe enriched pools was then diluted into microtiter dishes so that only 10 to 20% of the wells received a cell. After growth to adequate density, samples were removed and analyzed again by PCR assay. By this way, clones ofthe positively targeted cells can be isolated.
For further analyzing, one isolate of the targeted clone was expanded and used to prepare genomic DNA for Southern blot analysis.
A further subject-matter ofthe invention is a soluble complex for targeting an oligonucleotide molecule according to the invention which hybridizes in a manner which is specific for nucleic acid molecules of the hydroxylase with a part or all of SEQ ED NO:l, complexed with an oligonucleotide molecule binding agent, which complexes the oligonucleotide molecule under extracellular conditions and releases said oligonucleotide molecule under intracellular conditions as an oligonucleotide molecule specifically bindable to hydroxylase nucleic acid molecule.
Such delivery systems are well-known in the state of the art. For example, oligonucleotides are covalently coupled to polycations, such as polylysine (M. Lemaitre et al. (1987) (43)). Further delivery systems using polycation conjugates (e.g. transferrin) are described in WO 92/20316 (44), USP 5,166,320 (45), WO 92/19281 (46), WO 92/13570 (47), EP-A 0 388 758 (48), WO 93/07283 (49), WO 92/17210 (50), WO 91/17773 (51), WO 93/04701 (52) and transfer peptides as specified in PCT/EP94/01147 (53) are also suitable for use. The efficacy of the internalization of the nucleic acid molecules according to the invention in cells can be improved by binding the nucleic acid molecule to amphiphilic molecules, such as polyethylene glycol in a complex. Further preferred are the use of transfection reagents, such as DOTMA (WO 91/06309 (54) and WO 91/17424 (55)). Liposomes and dendromers are also useful.
In order to attain cell specificity, the nucleic acid molecules according to the invention can be coupled non-covalently to conjugates from a DNA-binding substance (e.g. polycations) and/or a cell-specific ligand (e.g. protein, preferably PSA specific antibody) (Wu and Wu (1987) (56); Wu et al. (1988) (57)). Further, internalization of the nucleic acid molecules in cells is accomplished by means ofa soluble DNA carrier system consisting ofa chemically synthesized conjugate comprising mannose and lactose as the ligands (P. Midoux et al. (1993) (58)). EP-A 0 388 758 (48) discloses chemically synthesized transferrin polycation conjugates which form complexes with polyanionic nucleic acid molecules. By means of the binding to the transferrin receptor these complexes can be internalized in the target cells.
It is also known to use conjugates of polylysine and asialoglycoprotein (Wu et al. (1988) (57)) or with a galactose ligand (Plank et al. (1992) (59)) in the complexes. As ligands there were also employed inactivated adenoviruses (Cotten et al. (1992) (60); Wagner et al. (1992) (61)) or haemagglutinin infusion peptides (Wagner et al. (1992) (62)). WO 93/07283 (49) also describes, with regard to non-viral gene transfer, a "2-ligand-system" comprising a DNA- binding (polycationic) portion (substance with affinity towards nucleic acid molecules) and an internalization factor for the take-up of DNA in the cell. To release the complexes from the endosomes into cytoplasm, there may be added to these complexes, as described in WO 93/07283 (49), a socalled endosomolytic agent which corresponds, for example, to a virus or a virus component (e.g. adenovirus or influenza haemagglutinin).
As antisense oligos there are preferably selected oligos which hybridize with approximately a part or all of nucleotides 42 to 1307 of SEQ ID NO: 1.
If the carrier for the oligonucleotide molecule is a conjugate from a cell-specific ligand and a DNA binding substance, these substances are preferred to be covalently linked and the linkage typically is a peptide bond. This can be formed, for example, with a water-soluble carbodiimide as described by G. Jung et al. (1981) (63). An alternative linkage is a disulfide bond. The cell-specific agent can be a natural or synthetic ligand (for example, a protein polypeptide, glycoprotein, etc.) or it can be an antibody or an analogue thereof which specifically binds to a cellular surface structure which then mediates internalization of the bound complex. Such antibodies are, for example, anti-CD3 or anti-CD4 antibodies. After binding, these antibodies are internalized.
Typically, the cell-specific binding agent is a ligand which binds to a cell-surface receptor. Preferably there are employed receptors which are specific for such tissue cells from which the tumor to be treated originates.
It is specifically preferred to use the antisense oligos for the treatment of tumor diseases involving a high metastasis potential (small cell lung carcinoma, medulloblastoma, Wilms' tumor and lymphoid tumor W.F. Kern et al. (1993) (65)). Tumor antigens that are suitable for use as surface receptors are, for instance, the tumor antigens.
It is further preferred that the employed cell-specific ligand acts as a substance which facilitates the internalization ofthe oligonucleotide molecules according to the invention. Such internalization factors are, for example, transferrin or anti-CD4-antibody.
The optional ratio of the cell-specific binding agent to the oligonucleotide molecule and the oligonucleotide binding agent in the complexes can be determined empirically. When polycations are used, the molar ratio ofthe components will vary depending on the size ofthe polycation and the size of the oligonucleotide. To form the complex, the oligonucleotide molecules and carriers are mixed and incubated under conditions conductive to complexation. For example, the oligonucleotide molecule and carrier can be mixed at the appropriate ratio in 2 mol/l NaCl and the solution can be diluted to 0.15 mol/l and filtered to provide an administerable composition.
The oligonucleotide molecules or the molecular complexes of this invention can be administered parenterally. Preferably, it is injected intravenously. The complex is administered in solution in a physiologically acceptable vehicle.
Vector pWSPH.01 which contains the nucleotides 150 to 1986 of SEQ ID NO:l was deposited under the Budapest Treaty with Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM), Mascheroder Weg lb, D-38124 Braunschweig on 24 May 1995 and was accorded Accession Number DSM 10009. A second vector pWSPH.03 which contains the nucleotides 1 to 211 of SEQ ID NO. l was deposited under the Budapest Treaty with Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM), Mascheroder Weg lb, D-38124 Braunschweig on 24 May 1995 and was accorded Accession Number DSM 10010.
Due to the fact that the occurrence of minor errors in the sequencing of DNA sequences cannot be ruled out, it is pointed out that in the event of any discrepancy between the sequence contained in the vectors pWSPH.01 and pWSPH.03 and the sequence stated in SEQ ID NO:l, the sequence accessible, to the person skilled in the art, from said vectors should be resorted to.
The following examples, references and sequence listing as well as the drawing are provided to aid the understanding of the present invention, the true scope of which is set forth in the appended claims. It is understood that modifications can be made in the procedures set forth without departing from the spirit ofthe invention.
Description of the Figures
Figure 1: Vectors useful for the production of hydroxylase-deficient host cells.
The fat line shows the vector homology to the target locus (hydroxylase gene). The thin line shows the bacterial plasmid sequence (e.g. pUC). The dotted rectangle represents a hydroxylase exon. The positive selection marker is represented by the symbol "+".
A) Replacement Vector: The positive selection marker interrupts the target homology region ofthe hydroxylase gene, preferably in an upstream exon, in order to attain a zero mutant. The negative selection marker is represented by the symbol "-". The replacement vector is linearized prior to transfection outside ofthe target homology region.
B) Insertion Vector: A positively selectable marker can be cloned into the hydroxylase-homologous sequence or into the vector background. A double strand break within the homologous targeting sequence is inserted prior to transfection.
Targeting vectors can be inserted in the production cell lines by means of electroporation.
By means of DNA (Southern blot, PCR), RNA (Northern blot) and protein analysis it can be verified whether the hydroxylase gene has been mutated successfully. In the event that an intact allele remains in the cells, another knock out preparation can be carried out, using alternative selection markers.
Sequence Listing
SEQ ID NO:l denotes nucleotide and deduced protein sequence ofthe hydroxylase cDNA. SEQ ID NO:2 denotes protein sequence deduced from cDNA.
Example 1
Purification of CMP-Neu5Ac hydroxylase
All procedures were performed at 4°C Pig submandibular glands were removed from freshly slaughtered animals and stored frozen at -20°C Thawed tissue was minced and homogenized in 50 mM HEPES/NaOH (pH 7.4) (5 ml/g wet mass of tissue) using an Ultraturrax. The resulting homogenate was centrifuged at 10,000 g for 30 min and the pellet was discarded. The mucin and remaining particulate material in the 10,000 g supernatant were precipitated by the addition of 2% (by mass) N-cetyl-N,N,N-trimethylammonium bromide dissolved in 50 mM HEPES/NaOH (pH 7.4), (final concentration 0.2%), followed by centrifugation at 100,000 g for 1 h. CMP-Neu5Ac hydroxylase was purified from this high-speed supernatant. The mucin content was estimated by quantification of sialic acids using the orcinol reagent (R. Schauer et al. (1978) (82).
The mucin-free high-speed supernatant (1.1 1) was fractionated in a batch procedure using 300 ml Q-Sepharose slurry equilibrated with 10 mM HEPES/NaOH (pH 7.4). For each step, the Q-Sepharose was sedimented by centrifugation at 75 g for 5 min. Non-bound protein was removed from the Sepharose with 1.75 1 10 mM HEPES/NaOH (pH 7.4) and bound protein including hydroxylase activity was eluted with 500 ml lO mM HEPES/NaOH (pH 7.4) containing 400 mM NaCl.
After a 4-fold dilution with 50 mM HEPES/NaOH (pH 7.4), the Q-Sepharose eluate was applied to a Cibacron Blue 3GA-Agarose column (5 x 11 cm) equilibrated with 50 mM HEPES/NaOH (pH 7.4) containing 100 mM NaCl, the flow rate being about 2 ml/min. Non- bound protein was removed with the equilibration buffer and the column was developed with a 1.2 1 linear gradient from 0.1 to 1.5 M NaCl in 50 mM HEPES/NaOH (pH 7.4). The fractions with the greatest hydroxylase activity were pooled, concentrated and, after desalting, applied to a column of Reactive Brown 10- Agarose (1.5 x 5.5 cm) equilibrated with 50 mM HEPES/NaOH (pH 7.4) at a flow rate of 0.1 ml min. After washing with equilibration buffer, elution was performed with a 120 ml linear gradient from 0 to 2 M NaCl in equilibration buffer.
After pooling and concentration of the most active fractions, ammonium sulphate was added to 41% saturation and the sample applied to a column of Hexyl-Agarose (1.5 x 6.0 cm) equilibrated in 50 mM HEPES/NaOH (pH 7.4) containing ammonium sulphate at 41% saturation. Washing of the column with the equilibration buffer was followed by elution of bound protein with a 140 ml linear gradient of (NH_i)2SO4 from 41 to 0% saturation in 50 mM HEPES/NaOH (pH 7.4), the flow rate being 1 ml/min.
The final purification on Superose S.12 was performed using the desalted Hexyl-Agarose pool after concentration to a volume of 200 μl. The Superose S.12 column was equilibrated in 50 mM HEPES/NaOH (pH 7.4) containing 100 mM NaCl and calibrated with cytochrome c (12.5 kDa), carbonic anhydrase (29 kDa), ovalbumin (45 kDa) and bovine serum albumin (66 kDa). The flow rate was 0.2 ml/min and 200 μl fractions were collected.
The protein concentrations were measured by the method of Bradford (1976), using Bio-Rad reagent (Bio-Rad, Munich, FRG). Protein samples were concentrated by ultrafiltration on membranes with &Mr cutoff of 10 or 20 kDa (Sartorius, Gottingen, FRG).
Samples of each purification step were analyzed by SDS-PAGE on a gel consisting of a 4% stacking gel and a 13% resolving gel.
Example 2
Cloning the CMP-Neu5AC hydroxylase
With the use of three of the amino acid sequences (peptides 1, 2 and 5), degenerated oligonucleotide primers for both orientations, taking into account the codon usage in pigs, were prepared. mRNA from pig submandibular glands was transcribed into single-strand cDNA. By means of this cDNA and the primers, PCR (polymerase chain reaction) at various conditions was carried out. In doing so, all possible primer combinations were investigated in the first reaction series. The products resulting from these preparations were applied in a second series of PCR reactions in which the reverse primers were exchanged (nested primers). In doing so, two PCR products (96 bp and 411 bp) were obtained which suggest the following order ofthe peptides: 1, 2 and 5.
The PCR product having a size of 96 bp was transformed after ligation into a pUC vector by means of electroporation in E.coli cells, strain XLI blue. The plasmid insert of a positive clone was sequenced. The protein sequence derived therefrom contains the regions of the peptide pieces 2 and 5 that were used to prepare the primers, as well as the adjacent regions. Thus this PCR product is a part ofthe hydroxylase gene.
From mRNA of pig submandibular glands, there was prepared an oligo (dt)-primed cDNA library in λ-phagen ZAP II (Stratagene). The 96 bp PCR product, after being labelled with digoxigenin, was employed as a probe to search within this cDNA library from pig submandibular glands. In doing so, several positive clones were found; the longest of these clones, which had a length of about 1800 bp, was characterized and sequenced. In the nucleotide sequence, a reading frame of about 1270 bp, which was open at the 5' end, was found. The peptide sequence derived therefrom contains all known peptide pieces of the CMP-Neu5 Ac hydroxylase. This confirms that the clone found codes for about 80% of the hydroxylase protein.
Example 3
Recombinant expression of fusion-free hydroxylase in E. coli
The DNA sequence coding for hydroxylase is modified in such fashion as to allow for efficient expression in E. coli.
For expression, an expression plasmid is transfected into a suitable E. coli strain. Such strains are, in the case of the use of an expression plasmid under the control of lac repressor such as the expression plasmid pl 1379, strains which possess a sufficiently high intracellular concentration of lac repressor. These kinds of strains can be prepared by transfection of a second plasmid such as pREP4 (Diagen GmbH), pUBS 500 or pUBS520 (Brinckmann et al. (1989) (67)). The applied E. coli strains should preferably have a low protease activity ofthe cells proper, as is the case, for instance, with E. coli UT5600 (Earhart et al. (1979) (67)), E. coli BL21 (Grodberg and Dunn (1988) (68)) or E. coli B. Then, expression cultivation is accomplished in a fashion according to the state ofthe art. For recovery, hydroxylase obtained as a protein aggregate from E. coli is processed according to the procedures described in EP 0 241 022 (69), EP 0 364 926 (70), EP 0 219 874 (71) and DE-A 40 37 196 (72). In detail, for example the following procedure is applied for this puφose: hydroxylase- containing protein aggregates from E.coli fermentations (socalled "inclusion bodies") are solubilized in 6 M guanidinium hydrochloride, 100 mM TrisHCl at pH 8, I mM EDTA, subsequently adjusted to a pH of 3 to 4 and dialyzed against 4 M guanidinium hydrochloride at pH 3.5. The renaturing ofthe solubilized protein is then carried out in 1 M arginine at pH 8, 1 mM EDTA, 5 mM GSH (glutathione, reduced) and 0.5 mM GSSG (glutathione, oxidized). From the renaturing preparation, hydroxylase can be obtained, for instance, after addition of 1.4 M ammonium sulfate by adsoφtion to hydrophobic gel matrices such as Fractogel TSK Butyl (E. Merck, Darmstadt) and subsequent elution in 20 mM TrisHCl at pH 7.
Example 4
Recombinant expression of hydroxylase in mammalian cells
For this, the cDNA is ligated into a vector in which it is transcribed into mammalian cells, on the basis of a strong promoter-enhancer system. Such promoters and enhancers are mostly from viruses such as SV40, hCMV, polyoma or retroviruses. As an alternative there can also be applied promoter-enhancer systems which are specific to a certain cell type or tissue type, such as, for instance, WAP-, MMTV- or immune globuline promoter, or systems which are inducible, such as, for instance, metallothioneine promoter. This kind of vector supplements the hydroxylase cDNA (if the latter is used) with donor and acceptor signals for RNA processing as well as a signal for poly-A-addition. For example, pCMX-pLl (Umesono et al. (1991) (73)) is such a suitable vector. Into the one and only EcoRI cleavage site of this vector the hydroxylase cDNA provided with EcoRI linkers is ligated, wherein it is ensured by restriction analysis with the aid ofthe other cleavage sites in the polylinker of this vector that the hydroxylase cDNA is oriented in reading direction of the CMV promoter. An absolutely analogous procedure is applied when cloning into other vectors, e.g. into pCDNA3 (Invitrogen, San Diego/USA) or pSG5 (Stratagene, LaJolla/USA). The DNA of the so obtained expression plasmids is prepared from E. coli and transfected into the mammalian cells, applying techniques that are specific to the cell types in the particular case (Methods of Enzymoiogy 185 (Gene Expression Technology), ed. David V. Goeddel, Academic Press 1991, section (74)). After transfection, the cells are cultured in MEM (Gibco) without addition of fetal calf serum, whereby hydroxylase is detectable in the cell culture supernatant after 48 hours. Example 5
Digoxigenin(DIG)-labeIIed RNA probes for diagnostic purposes
For preparing a probe, the fragment to be employed for hybridization was cloned in a suitable transcription vector (wit a T3, T7 or SP6 promoter). For labelling, 1 to 2 μg of the plasmid were linearized, subsequently purified by means of phenol/chloroform extraction and precipitated with ethanol.
Reaction batch:
1 to 2 μg DNA (dissolved in DEPC-treated H2O), 2 μl 10 x transcription buffer (Boehringer Mannheim), 40 U RNA polymerase (T3, T7 or SP6), 2 μl NTP/DIG-UTP mixture (10 mM ATP, CTP, GTP; 6.5 mM UTP; 3.5 mM DIG-UTP) and 1 μl RNase inhibitor (20 U/μl) were filled with H2O to a volume of 20 μl.
The preparation was incubated for two hours at 37°C Subsequently the DNA was removed by the addition of 2 μl RNase-free DNase I (10 U/μl) and by further incubation for 15 minutes at 37°C The reactions were stopped by adding 1 μl 0.5 M EDTA (pH 8.0), and the synthesized RNA was precipitated with 0.1 vol. 3 M sodium acetate (pH 5.2) and 2.5 vol. ethanol. The RNA was washed once with 70% ethanol, dried and then dissolved in 100 μl H2O (DEPC-treated). The labelling efficiency was determined in that dilution series of the labelled sample and of a labelled control RNA were fixed on a nylon membrane and subsequently developed with the anti-DIG-FaD alkaline phosphatase conjugate as described in Example 8.
Example 6 Hybridization assay
RNA or DNA from samples immobilized on nylon membranes was hybridized with DIG- labelled RNA probes. Both with respect to RNA and with respect to DNA, the hybridization was carried out under identical conditions, except for the lower hybridization temperature in the case ofthe DNA-RNA hybridizations.
The membranes were first of all pre-hybridized in hybridizing buffer (50% formamide, 50 mM sodium phosphate pH 7.0, 7% SDS, 0.1% N-lauroylsarcosine, 5xSSC, 2% blocking reagent (Boehringer Mannheim) for 1 to 2 hours (65°C in the case ofthe RNA-RNA and 50°C in the case of the DNA-RNA hybridizations). The hybridization with the DIG-labelled probe was carried out for 16 to 90 hours and also at 65°C and 50°C, respectively. Immediately beforehand, the probe was heated to 98°C for 5 minutes and subsequently cooled on ice. After hybridization, the membrane was washed twice for 5 minutes in 2xSSC, 0.1% SDS (at ambient temperature) and twice for 15 minutes in O.lxSSC, 0.1% SDS (at 65°C).
The detection ofthe hybridized probe was carried out applying the following procedure:
1. Washing in buffer 1 (150 mM NaCl, 100 mM maleic acid pH 7.5) for 2 minutes;
2. Saturating the membrane in buffer 2 (1% blocking reagent in buffer 1) for 30 to 60 minutes;
3. Incubating with anti-DIG-Fab alkaline phosphatase conjugate (1 : 10,000 diluted in buffer 2; 75 mU/ml) for 30 minutes;
4. Washing twice in buffer 1 with 0.3% Tween-20 for 15 minutes;
5. Washing in buffer 3 ( 100 mM NaCl, 100 mM Tris/HCl pH 9.5) for 2 minutes.
The membrane, together with the substrate solution (CSPD [di-sodium-3-(4- methoxyspiro{ l,2-dioxetane-3,2'-(5,-chloro)tricyclo[3.3.1.1^'^]decan}-4-yl)phenylphosphate] diluted at a ratio of 1:100 in buffer 3), was welded into plastic foil and incubated for 30 minutes at 37°C Thereafter, the substrate solution was pressed out from the foil, the foil was sealed by welding and the signals were represented by exposition on X-ray film. The optimum exposition times were between 30 minutes and 2 hours.
Example 7
Preparation of antisense DNA and hydroxylase-deficient CHO cells
Oligonucleotides and PLL conjugates are prepared according to J.P. Leonetti et al., Gene 72 (1988) 323-332.
β-anomeric oligodesoxynucleotide molecules (15-20mer) complementary to nucleotides of SEQ ED NO:l were synthesized on a Biosearch Cyclone DNA synthesizer using a phosphoramidite method. As a control, random oligonucleotide molecules having the same length were prepared in identical fashion. The purity of oligonucleotide molecules was determined by electrophoresis through 15% polyacrylamide gels stained with etidium bromide. Preparation of an adenosine-derivatized support
To a solution of
Figure imgf000025_0001
2,-(3')o-dibenzoyl-5,-dimethoxytrityl-adenosine, 2.15 g, 2.76 mmol (Kempe et al., Nucleic Acids Res. 10 (1982) 6695-6714) and dimethylamino-4-pyridine 0.506 g, 4.15 mmol in methylene chloride 12.3 ml were added succinic anhydride 0.415 mmol and triethylamine 0.58 ml, 4.15 mmol. The mixture was stirred for 2.5 h, poured onto 1 M aqueous triethylammonium hydrogen carbonate (120 ml), and the products were extracted with methylene chloride (3 x 150 ml). The combined organic layers were washed with water, dried over anhydrous sodium sulfate and evaporated to dryness. The residue was fractionated by silica gel chromatography using methanol-triethylamine-methylene chloride (0:1:99 to 2:1:97, v/v/v) as eluent. Fractions containing the pure 3'-o-hemisuccinate were combined and evaporated to dryness. The residue was dissolved in 1,2-dimethoxyethane and pentachlorophenol 0.783 g, 2.94 mmol and N.N'-dicyclohexylcarbodiimide 0.606 g, 2.94 mmol were added. The solution was stirred for 24 h and evaporated to dryness. The resulting residue was purified by silica gel chromatography using acetone-methylene chloride (5:95 to 8:92, v/v) as eluent. Fractions containing pure succinate diester were combined and evaporated to dryness. Precipitation of the residue from petroleum ether afforded a colorless powder (1.69 g) in 56% overall yield.
Long-chain alkylamine-controlled pore glass (5 g, from Sigma) was activated with triethylamine (0.3 ml, 1.5 mmol) in pyridine (10.5 ml). After evaporation of the solvent, the residue was suspended in a solution of succinate diester (1.69 g, 1.5 mmol) in dry pyridine (15 ml). After the mixture was stirred gently for 3 days at room temperature, the solid material was collected by suction, washed thoroughly with pyridine and methylene chloride, and dried. The glass beads were suspended in a capping solution (24 ml) made from acetic anhydride (0.186 ml, 1.98 mmol), 2,6-lutidine (0.198 ml, 1.71 mmol) and 4-dimethylaminopyridine (1.8 g, 14.7 mmol) in anhydrous tetrahydrofuran (30 ml). The mixture was stirred for 10 min and the glass beads were collected by suction, washed with tetrahydrofuran (2 x 20 ml) and methylene chloride (4 x 20 ml) and dried. Spectrophotometric measurement of the amount of dimethoxytrityl cation liberated by treating a portion of the functionalized adenosine- derivatized glass beads with 0.1 M toluene-sulfonic acid in acetonitrile indicated a loading of 24 μmol g. Synthesis of oligos
(β)-Anomeric oligonucleotides were synthesized on a Biosearch Cyclone DNA synthesizer using the phosphoramidite method. The synthesis was initiated on an adenosine derivatized support prepared as described above.
Conjugation of oligos to poly(L-Iysine) (PLL)
The (β)-anomeric oligos (80 nmol) in 100 μm of 20 mM Na acetate (pH 4.4) were oxidized with 4.6 μmol Na metaperiodate for 30 min at 0°C in the dark. An equal volume of PLL (mean 14-kDa, Sigma) 80 nmol in 2 M NaCl, 0.2 M Na borate buffer (pH 8.4) and 100 μmol sodium cyanoborohydride were added. The mixture was incubated overnight at 20°C and then loaded on a Sephadex G-50 column equilibrated with 0.5 M NaCl, 20 mM Na acetate buffer (pH 6.0). Each fraction was assayed for its oligo-PLL content by absorbance at 260 nm and by the BCA protein assay (from Pierce). The conjugates were stored at -80°C
Transfection
Hydroxylase-positive CHO-wt cells were incubated with 0.9 μg oligo-PLL conjugate. Hydroxylase activity was measured according to W. Schlenzka et al. (1994) (20). Cell extracts were added at 37°C to a mixture of 50 mM HEPES/NaOH (pH 7.4) at 37°C in the presence of 1 mM NADH, 0.5 mM FeSO4, 10 μM CMP-[4,5,6,7,8,9--14C]Neu5Ac and pig liver microsomes (-20 μg protein in the test) solubilized in Triton X-100 (1.3%, by mass), the final volume of an assay being 30 μl. Solubilized microsomes were used as a source of cytochrome b5 and cytochrome b5 reductase L. Shaw et al. (1994) (14). The assays, performed in duplicate, were stopped by the addition of 5 μl 1 M trichloroacetic acid. The precipitated material was removed by centrifugation and released [^C] sialic acids were analysed using radio TLC (L. Shaw and R. Schauer (1989) (83).
Fractions from Q-Sepharose, Cibacron Blue 3 GA- Agarose, Reactive Brown 10- Agarose and Hexyl Agarose chromatography were desalted on NAP-5 columns equilibrated with 50 mM HEPES/NaOH (pH 7.4) before measuring their hydroxylase activity. Exa ple 8
Production of Erythropoietin (EPO) in hydroxylase-deficient CHO cells
Hydroxylase-deficient CHO cells are prepared by transfection of CHO wild-type cells with a replacement or insertion vector according to Figure 1.
DNA (20 μg) from the plasmid pPTFL13 described in Example 6 of EP-B 0 205 564 was digested with the restriction endonuclease Cla I to linearize the plasmid and was ligated to Cla I-digested DNA from the plasmid pAdD26SVp(A) 1 (2 μg) which contains an intact dihydrofolate reductase (DHFR) gene driven by an adenovirus major late promoter (Kaufman and Sharp (1982) (21). This ligated DNA was used to transfect DHFR-negative CHO cells and following growth for two days, cells which incorporated at least one DHFR gene were selected in alpha media lacking nucleotides and supplemented with 10% dialyzed fetal bovine serum. Following growth for two weeks in selective media, colonies were removed from the original plates, pooled into groups of 10 to 100 colonies per pool, replated and grown to confluence in alpha media lacking nucleotides. The supernatant media from the pools grown prior to methotrexate selection were assayed for EPO by RIA. Pools which showed positive EPO production were grown in the presence of methotraxate (0.02 uM) and then subcloned and reassayed. A subclone was subjected to stepwise selection in increasing concentrations of MTX according to EP-B 0 205 564 (which is incoφorated herein by reference). Such a subclone can be used for the production of EPO; EPO can be purified from cell supernatant by applying different standard chromatographic techniques as described, for instance, in EP-B 0 209 539 (64).
Example 9
Carrying out the determination of the sialic acid
Determination of the sialic acid is carried out by enzymatically splitting the sialic acid and subsequently performing chromatographic determination of the sialic acid by means of "Dionex-HPEAC".
To an EPO sample solution in sodium phosphate buffer, pH 7.2 (about 90 to 180 μl)) were added 5 μl neuramidase from Arthrobacter ureafaciens 1 U/100 μl, Boehringer Mannheim, No: 269 611) in sodium phosphate buffer to a final concentration of 2 nmol EPO protein in 200 μl. Mixing is carried out, and incubation is performed for 7 hours at 37°C 100 μl of sample volume is withdrawn and mixed with 300 μl water. This diluted sample solution is used to carry out the chromatographic determination of sialic acid by means of "Dionex- HPAEC". Detection is carried out with an amperometric detector (PAD; Dionex Coφ., Sunnyvale, USA) in line with the HPEAC. Separation of Neu5Ac and Neu5Gc is achieved with a linear gradient using 100 mM NaOH (eluent A) and 500 mM sodium acetate (eluent B). Eluent B is increased from 0% to 100% in 40 minutes. NeuAc elutes before Neu5Gc does under these conditions and both sialic acids can be quantified using Neu5Ac and Neu5Gc as standards (concentration: 1 to 10 nmol for Neu5Ac and 0.05 to 0.5 nmol for Neu5Gc). The PAD setting for the detection of Neu5Ac 8s 3000 nA and for Neu5Gc, 100 nA.
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(85) W. Schlenzka et al., FEBS Lett. 385 (1996) 197-200 SEQUENCE LISTING (1) GENERAL INFORMATION:
(i) APPLICANT:
(A) NAME: BOEHRINGER MANNHEIM GMBH
(B) STREET: Sandhofer Str. 116
(C) CITY: Mannheim
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(F) POSTAL CODE (ZIP) : D-68305
(G) TELEPHONE: 0885660-3446 (H) TELEFAX: 0885660-3451
(ii) TITLE OF INVENTION: Nucleic acid coding for
CMP-N-acetylneuraminic acid hydroxylase and its use for the production of modified glycoproteins
(iii) NUMBER OF SEQUENCES: 2
(iv) COMPUTER READABLE FORM:
(A) MEDIUM TYPE: Floppy disk
(B) COMPUTER: IBM PC compatible
(C) OPERATING SYSTEM: PC-DOS/MS-DOS
(D) SOFTWARE: Patentin Release #1.0, Version #1.30B (EPO)
[2) INFORMATION FOR SEQ ID NO: 1:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1986 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 42..1307
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1:
TTACTCACGC CTGCATGGAC CTCAAGCTGG GGGACAAGAG A ATG GTG TTC GAC 53
Met Val Phe Asp
1
CCT TGG TTA ATC GGT CCT GCT TTT GCG CGA GGA TGG TGG TTA CTA CAC 101 Pro Trp Leu Ile Gly Pro Ala Phe Ala Arg Gly Trp Trp Leu Leu His 5 10 15 20
GAG CCT CCA TCT GAT TGG CTG GAG AGG CTG AGC CGC GCA GAC TTA ATT 149 Glu Pro Pro Ser Asp Trp Leu Glu Arg Leu Ser Arg Ala Asp Leu Ile
25 30 35 TAC ATC AGT CAC ATG CAC TCA GAC CAC CTG AGT TAC CCA ACA CTG AAG 197 Tyr Ile Ser His Met His Ser Asp His Leu Ser Tyr Pro Thr Leu Lys 40 45 50
AAG CTT GCT GAG AGA AGA CCA GAT GTT CCC ATT TAT GTT GGC AAC ACG 245 Lys Leu Ala Glu Arg Arg Pro Asp Val Pro Ile Tyr Val Gly Asn Thr 55 60 65
GAA AGA CCT GTA TTT TGG AAT CTG AAT CAG AGT GGC GTC CAG TTG ACT 293 Glu Arg Pro Val Phe Trp Asn Leu Asn Gin Ser Gly Val Gin Leu Thr 70 75 80
AAT ATC AAT GTA GTG CCA TTT GGA ATA TGG CAG CAG GTA GAC AAA AAT 341 Asn Ile Asn Val Val Pro Phe Gly Ile Trp Gin Gin Val Asp Lys Asn 85 90 95 100
CTT CGA TTC ATG ATC TTG ATG GAT GGC GTT CAT CCT GAG ATG GAC ACT 389 Leu Arg Phe Met Ile Leu Met Asp Gly Val His Pro Glu Met Asp Thr 105 110 115
TGC ATT ATT GTG GAA TAC AAA GGT CAT AAA ATA CTC AAT ACA GTG GAT 437 Cys Ile Ile Val Glu Tyr Lys Gly His Lys Ile Leu Asn Thr Val Asp 120 125 130
TGC ACC AGA CCC AAT GGA GGA AGG CTG CCT ATG AAG GTT GCA TTA ATG 485 Cys Thr Arg Pro Asn Gly Gly Arg Leu Pro Met Lys Val Ala Leu Met 135 140 145
ATG AGT GAT TTT GCT GGA GGA GCT TCA GGC TTT CCA ATG ACT TTC AGT 533 Met Ser Asp Phe Ala Gly Gly Ala Ser Gly Phe Pro Met Thr Phe Ser 150 155 160
GGT GGA AAA TTT ACT GAG GAA TGG AAA GCC CAA TTC ATT AAA ACA GAA 581 Gly Gly Lys Phe Thr Glu Glu Trp Lys Ala Gin Phe Ile Lys Thr Glu 165 170 175 180
AGG AAG AAA CTC CTG AAC TAC AAG GCT CGG CTG GTG AAG GAC CTA CAA 629 Arg Lys Lys Leu Leu Asn Tyr Lys Ala Arg Leu Val Lys Asp Leu Gin 185 190 195
CCC AGA ATT TAC TGC CCC TTT CCT GGG TAT TTC GTG GAA TCC CAC CCA 677 Pro Arg Ile Tyr Cys Pro Phe Pro Gly Tyr Phe Val Glu Ser His Pro 200 205 210
GCA GAC AAG TAT ATT AAG GAA ACA AAC ATC AAA AAT GAC CCA AAT GAA 725 Ala Asp Lys Tyr Ile Lys Glu Thr Asn Ile Lys Asn Asp Pro Asn Glu 215 220 225
CTC AAC AAT CTT ATC AAG AAG AAT TCT GAG GTG GTA ACC TGG ACC CCA 773 Leu Asn Asn Leu Ile Lys Lys Asn Ser Glu Val Val Thr Trp Thr Pro 230 235 240 AGA CCT GGA GCC ACT CTT GAT CTG GGT AGG ATG CTA AAG GAC CCA ACA 821 Arg Pro Gly Ala Thr Leu Asp Leu Gly Arg Met Leu Lys Asp Pro Thr 245 250 255 260
GAC AGC AAG GGC ATC GTA GAG CCT CCA GAA GGG ACT AAG ATT TAC AAG 869 Asp Ser Lys Gly Ile Val Glu Pro Pro Glu Gly Thr Lys Ile Tyr Lys 265 270 275
GAT TCC TGG GAT TTT GGC CCA TAT TTG AAT ATC TTG AAT GCT GCT ATA 917 Asp Ser Trp Asp Phe Gly Pro Tyr Leu Asn Ile Leu Asn Ala Ala Ile 280 285 290
GGA GAT GAA ATA TTT CGT CAC TCA TCC TGG ATA AAA GAA TAC TTC ACT 965 Gly Asp Glu Ile Phe Arg His Ser Ser Trp Ile Lys Glu Tyr Phe Thr 295 300 305
TGG GCT GGA TTT AAG GAT TAT AAC CTG GTG GTC AGG ATG ATT GAG ACA 1013 Trp Ala Gly Phe Lys Asp Tyr Asn Leu Val Val Arg Met Ile Glu Thr 310 315 320
GAT GAG GAC TTC AGC CCT TTG CCT GGA GGA TAT GAC TAT TTG GTT GAC 1061 Asp Glu Asp Phe Ser Pro Leu Pro Gly Gly Tyr Asp Tyr Leu Val Asp 325 330 335 340
TTT CTG GAT TTA TCC TTT CCA AAA GAA AGA CCA AGC CGG GAA CAT CCA 1109 Phe Leu Asp Leu Ser Phe Pro Lys Glu Arg Pro Ser Arg Glu His Pro 345 350 355
TAT GAG GAA ATT CGG AGC CGG GTT GAT GTC ATC AGA CAC GTG GTA AAG 1157 Tyr Glu Glu Ile Arg Ser Arg Val Asp Val Ile Arg His Val Val Lys 360 365 370
AAT GGT CTG CTC TGG GAT GAC TTG TAC ATA GGA TTC CAA ACC CGG CTT 1205 Asn Gly Leu Leu Trp Asp Asp Leu Tyr Ile Gly Phe Gin Thr Arg Leu 375 380 385
CAG CGG GAT CCT GAT ATA TAC CAT CAT CTG TTT TGG AAT CAT TTT CAA 1253 Gin Arg Asp Pro Asp Ile Tyr His His Leu Phe Trp Asn His Phe Gin 390 395 400
ATA AAA CTC CCC CTC ACA CCA CCT GAC TGG AAG TCC TTC CTG ATG TGC 1301 Ile Lys Leu Pro Leu Thr Pro Pro Asp Trp Lys Ser Phe Leu Met Cys 405 410 415 420
TCT GGG TAGAGAGGAC CTGAGCTGTC CCAGGGGTGC CCAACAACAT GAAAAAATCA 1357 Ser Gly
AGAATTTATT GCTGCTACGT CAAAGCTTAT ACCAGAGATT ATGCCTTATA GACATTAGCA 1417 ATGGATAATT ATATGTTGCA CTTGTGAAAT GTGCACATAT CCTGTTTATG AATCACCACA 1477 TAGCCAGATT ATCAATATTT TACTTATTTC GTAAAAAATC CACAATTTTC CATAACAGAA 1537 TCAACGTGTG CAATAGGAAC AAGATTGCTA TGGAAAACGA GGGTAACAGG AGGAGATATT 1597 AATCCAAGCA TAGAAGAAAT AGACAAATGA GGGGCCATAA GGGGAATATA GGGAAGAGAA 1657
AAAAATTAAG ATGGAATTTT AAAAGGAGAA TGTAAAAAAT AGATATTTGT TCCTTAATAG 1717
GTTGATTCCT CAAATAGAGC CCATGAATAT AATCAAATAG GAAGGGTTCA TGACTGTTTT 1777
CAATTTTTCA AAAAGCTTTG TTGAAATCAT AGACTTGCAA AACAAGGCTG TAGAGGCCAC 1837
CCTAAAATGG AAAATTTCAC TGGGACTGAA ATTATTTTGA TTCAATGACA AAATTTGTTA 1897
TTTACTGCGG ATTATAAACT CTAACAAATA GCGATCTCTT TGCTTCATAA AAACATAAAC 1957
ACTAGCTAGT AATAAAATGA GTTCTGCAG 1986
(2) INFORMATION FOR SEQ ID NO: 2:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 422 amino acids
(B) TYPE: amino acid (D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2:
Met Val Phe Asp Pro Trp Leu Ile Gly Pro Ala Phe Ala Arg Gly Trp 1 5 10 15
Trp Leu Leu His Glu Pro Pro Ser Asp Trp Leu Glu Arg Leu Ser Arg 20 25 30
Ala Asp Leu Ile Tyr Ile Ser His Met His Ser Asp His Leu Ser Tyr 35 40 45
Pro Thr Leu Lys Lys Leu Ala Glu Arg Arg Pro Asp Val Pro Ile Tyr 50 55 60
Val Gly Asn Thr Glu Arg Pro Val Phe Trp Asn Leu Asn Gin Ser Gly 65 70 75 80
Val Gin Leu Thr Asn Ile Asn Val Val Pro Phe Gly Ile Trp Gin Gin
85 90 95
Val Asp Lys Asn Leu Arg Phe Met Ile Leu Met Asp Gly Val His Pro 100 105 110
Glu Met Asp Thr Cys Ile Ile Val Glu Tyr Lys Gly His Lys Ile Leu 115 120 125
Asn Thr Val Asp Cys Thr Arg Pro Asn Gly Gly Arg Leu Pro Met Lys 130 135 140 Val Ala Leu Met Met Ser Asp Phe Ala Gly Gly Ala Ser Gly Phe Pro 145 150 155 160
Met Thr Phe Ser Gly Gly Lys Phe Thr Glu Glu Trp Lys Ala Gin Phe 165 170 175
Ile Lys Thr Glu Arg Lys Lys Leu Leu Asn Tyr Lys Ala Arg Leu Val 180 185 190
Lys Asp Leu Gin Pro Arg Ile Tyr Cys Pro Phe Pro Gly Tyr Phe Val 195 200 205
Glu Ser His Pro Ala Asp Lys Tyr Ile Lys Glu Thr Asn Ile Lys Asn 210 215 220
Asp Pro Asn Glu Leu Asn Asn Leu Ile Lys Lys Asn Ser Glu Val Val 225 230 235 240
Thr Trp Thr Pro Arg Pro Gly Ala Thr Leu Asp Leu Gly Arg Met Leu 245 250 255
Lys Asp Pro Thr Asp Ser Lys Gly Ile Val Glu Pro Pro Glu Gly Thr 260 265 270
Lys Ile Tyr Lys Asp Ser Trp Asp Phe Gly Pro Tyr Leu Asn Ile Leu 275 280 285
Asn Ala Ala Ile Gly Asp Glu Ile Phe Arg His Ser Ser Trp Ile Lys 290 295 300
Glu Tyr Phe Thr Trp Ala Gly Phe Lys Asp Tyr Asn Leu Val Val Arg 305 310 315 320
Met Ile Glu Thr Asp Glu Asp Phe Ser Pro Leu Pro Gly Gly Tyr Asp 325 330 335
Tyr Leu Val Asp Phe Leu Asp Leu Ser Phe Pro Lys Glu Arg Pro Ser 340 345 350
Arg Glu His Pro Tyr Glu Glu Ile Arg Ser Arg Val Asp Val Ile Arg 355 360 365
His Val Val Lys Asn Gly Leu Leu Trp Asp Asp Leu Tyr Ile Gly Phe 370 375 380
Gin Thr Arg Leu Gin Arg Asp Pro Asp Ile Tyr His His Leu Phe Trp 385 390 395 400
Asn His Phe Gin Ile Lys Leu Pro Leu Thr Pro Pro Asp Trp Lys Ser 405 410 415
Phe Leu Met Cys Ser Gly 420

Claims

Patent Claims
1. An isolated protein substantially free of contamination with cytochrome b5 and cytochrome b5 reductase, which
a) is a product ofa prokaryotic or eukaryotic expression of an exogenous DNA, b) catalyzes the conversion of CMP-Neu5A to CMP-Neu5Gc, and c) is coded by the DNA sequence shown in SEQ ID NO: 1 or comprises SEQ ID NO: 1 completely or at least 98% thereof, d) is coded by DNA sequences, which hybridize with SEQ ED NO. l under stringent conditions, or e) is coded by DNA sequences, which, if there was no degeneracy ofthe genetic code, would hybridize under stringent conditions with the sequences defined in c) to d).
2. The protein according to claim 1, said protein being coded by a sequence, which hybridizes under stringent conditions with the nucleotides 42 to 1307 of SEQ ED NO:l.
3. An isolated nucleic acid molecule, which secures expression in a prokaryotic or eukaryotic host cell of a protein with CMP-N-acetylneuramic acid hydroxylase activity and is selected from the group of
a) DNA molecules shown in SEQ ED NO: l or comprises SEQ ED NO:l completely or at least 98% thereof or the complementary sequences; b) nucleic acid molecules, which hybridize with SEQ ED NO:l under stringent conditions; or c) nucleic acid molecules, which, if there was no degeneracy of the genetic code, would hybridize under stringent conditions with one ofthe sequences stated in a) or b).
4. The nucleic acid molecule according to claim 3, said nucleic acid molecule hybridizing under stringent conditions with the nucleotides 42 to 1307 of SEQ ED NO:l.
5. A method for the detection of nucleic acid molecules, which code for a protein having CMP-N-acetylneuramic acid hydroxylase activity, which is characterized in that the sample to be examined is incubated with a nucleic acid probe, which is selected from the group comprising nucleic acid molecules, which hybridize under stringent conditions with nucleotides 42 to 1307 of SEQ ED NO:l, the nucleic acid probe is incubated with the nucleic acid molecule from the sample and the hybridization of the nucleic acid molecule in the sample and nucleic acid probe is detected, if desired, via a further binding partner.
6. An oligonucleotide molecule, which hybridizes under stringent conditions in a manner which is specific for nucleic acid molecule with SEQ ID NO: l or related RNA sequences, which code for a protein with CMP-N-acetylneuramic acid hydroxylase activity under extracellular or intracellular conditions.
7. The oligonucleotide molecule according to claim 6, which inhibits the expression of CMP-N-acetylneuramic acid hydroxylase.
8. The oligonucleotide molecule according to claim 6 or 7, characterized in binding to CMP-N-acetylneuramic acid hydroxylase mRNA.
9. The oligonucleotide molecule according to claims 6 to 8, characterized in that as oligonucleotide molecules, oligonucleotide molecule derivatives such as phosphotriester, methylphosphonates or phosphothioates or substituted oligonucleotides such as acridine-substituted or interchelating coupled oligonucleotide molecules or α-anomers are used.
10. The oligonucleotide molecule according to claims 6 to 9, having 15 to 50 bases.
11. A soluble complex for targeting to mammalian cells an oligonucleotide molecule, which hybridizes in a manner which is specific for a nucleic acid molecule, which codes for a protein with CMP-N-acetylneuramic acid hydroxylase activity with a part or all of SEQ ID NO: l or related RNA sequences complexed with an oligonucleotide molecule binding agent, which complexes the oligonucleotide molecule under extracellular conditions and releases said oligonucleotide under intracellular conditions as an oligonucleotide molecule specifically bindable to said nucleic acid molecule.
12. The soluble complex according to claim 11, wherein the oligonucleotide molecule binding agent is a polycation, such as polylysine.
13. The soluble complex according to claim 11 or 12, wherein the complex contains in addition a cell specific binding agent.
14. A method for the production of a second mammalian cell in vitro, which is CMP-N acetyl neuraminic acid hydroxylase activity-deficient, by transfecting a first mammalian cell, which contains said hydroxylase activity, with a nucleic acid molecule, which hybridizes under stringent conditions with the genome of said second cell, in a manner which is specific for the gene region of said hydroxylase activity coding gene and thereby modifies the genome of said first cell in such a manner that said first cell does not further contain hydroxylase activity, isolating from the cell mixture at least one second cell, which is deficient in said hydroxylase activity.
15. The use of a mammalian cell, which contains in its initial state a CMP-N acetyl neuraminic acid hydroxylase activity and subsequently is modified in such a manner that said cell no longer contains hydroxylase activity, for the production of a recombinant glycoprotein, wherein said cell is transfected with a nucleic acid molecule, which secures the expression of said recombinant protein, culturing said cells and isolating said recombinant glycoprotein from the cells or the supernatant.
16. Glycoconjugates, especially glycoproteins obtained from cells according to claim 15, which are characterized by the absence of Neu5Gc.
17. Erythropoietin obtained from cells, especially CHO cells according to claim 15, which is characterized by the absence of Neu5Gc.
PCT/EP1996/002966 1995-07-07 1996-07-05 Nucleic acid coding for cmp-n-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins WO1997003200A1 (en)

Priority Applications (3)

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AU66118/96A AU6611896A (en) 1995-07-07 1996-07-05 Nucleic acid coding for cmp-n-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins
EP96925669A EP0837942A1 (en) 1995-07-07 1996-07-05 Nucleic acid coding for cmp-n-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins
JP9505487A JPH10510434A (en) 1995-07-07 1996-07-05 Nucleic acids encoding CMP-N-acetylneuraminic acid hydroxylase and their use for the production of modified glycoproteins

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
EP95110609.5 1995-07-07
EP95110609A EP0752474A1 (en) 1995-07-07 1995-07-07 Nucleic acid coding for CMP-N-acetyl-neuraminic acid hydroxylase and its use for the production of modified glycoproteins
EP95114930 1995-09-22
EP95114930.1 1995-09-22

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