WO1996032504A3 - Solid phase sequencing of biopolymers - Google Patents
Solid phase sequencing of biopolymers Download PDFInfo
- Publication number
- WO1996032504A3 WO1996032504A3 PCT/US1996/005136 US9605136W WO9632504A3 WO 1996032504 A3 WO1996032504 A3 WO 1996032504A3 US 9605136 W US9605136 W US 9605136W WO 9632504 A3 WO9632504 A3 WO 9632504A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- probes
- nucleic acid
- target
- nucleic acids
- determined
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6872—Methods for sequencing involving mass spectrometry
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
Abstract
Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU55446/96A AU5544696A (en) | 1995-04-11 | 1996-04-10 | Solid phase sequencing of biopolymers |
EP96912743A EP0830460A1 (en) | 1995-04-11 | 1996-04-10 | Solid phase sequencing of biopolymers |
JP8531243A JPH11503611A (en) | 1995-04-11 | 1996-04-10 | Solid-phase sequencing of biopolymers |
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US42000995A | 1995-04-11 | 1995-04-11 | |
US41999495A | 1995-04-11 | 1995-04-11 | |
US08/419,994 | 1995-04-11 | ||
US08/420,009 | 1995-04-11 | ||
US08/614,151 US6436635B1 (en) | 1992-11-06 | 1996-03-12 | Solid phase sequencing of double-stranded nucleic acids |
US08/614,151 | 1996-03-12 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO1996032504A2 WO1996032504A2 (en) | 1996-10-17 |
WO1996032504A3 true WO1996032504A3 (en) | 1996-11-14 |
Family
ID=27411260
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US1996/005136 WO1996032504A2 (en) | 1995-04-11 | 1996-04-10 | Solid phase sequencing of biopolymers |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP0830460A1 (en) |
JP (1) | JPH11503611A (en) |
AU (1) | AU5544696A (en) |
CA (1) | CA2218188A1 (en) |
WO (1) | WO1996032504A2 (en) |
Cited By (7)
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USRE44693E1 (en) | 1996-11-06 | 2014-01-07 | Sequenom, Inc. | Beads bound to a solid support and to nucleic acids |
US8993271B2 (en) | 1997-04-01 | 2015-03-31 | Illumina, Inc. | Method of nucleic acid amplification |
US8999266B2 (en) | 2000-10-30 | 2015-04-07 | Agena Bioscience, Inc. | Method and apparatus for delivery of submicroliter volumes onto a substrate |
US9034798B2 (en) | 2003-01-16 | 2015-05-19 | Caprotec Bioanalytics Gmbh | Capture compounds, collections thereof and methods for analyzing the proteome and complex compositions |
US9249456B2 (en) | 2004-03-26 | 2016-02-02 | Agena Bioscience, Inc. | Base specific cleavage of methylation-specific amplification products in combination with mass analysis |
US9394565B2 (en) | 2003-09-05 | 2016-07-19 | Agena Bioscience, Inc. | Allele-specific sequence variation analysis |
US9512478B2 (en) | 2007-02-02 | 2016-12-06 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
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US7056659B1 (en) | 1997-07-11 | 2006-06-06 | Xzillion Gmbh & Co. | Characterizing nucleic acids |
US6207370B1 (en) | 1997-09-02 | 2001-03-27 | Sequenom, Inc. | Diagnostics based on mass spectrometric detection of translated target polypeptides |
US6268131B1 (en) * | 1997-12-15 | 2001-07-31 | Sequenom, Inc. | Mass spectrometric methods for sequencing nucleic acids |
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US6723564B2 (en) * | 1998-05-07 | 2004-04-20 | Sequenom, Inc. | IR MALDI mass spectrometry of nucleic acids using liquid matrices |
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US7270958B2 (en) | 1998-09-10 | 2007-09-18 | The Regents Of The University Of Michigan | Compositions and methods for analysis of nucleic acids |
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JP2001204463A (en) * | 2000-01-27 | 2001-07-31 | Toyo Kohan Co Ltd | Support for immobilizing nucleotide |
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US20040121335A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections |
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US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
JP2003043037A (en) * | 2001-07-27 | 2003-02-13 | Inst Of Physical & Chemical Res | Substrate for hybridization, manufacturing method and usage method of the substrate |
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US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
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US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
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Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1994011530A1 (en) * | 1992-11-06 | 1994-05-26 | Trustees Of Boston University | Positional sequencing by hybridization |
WO1994016101A2 (en) * | 1993-01-07 | 1994-07-21 | Koester Hubert | Dna sequencing by mass spectrometry |
EP0630972A2 (en) * | 1993-06-25 | 1994-12-28 | Hitachi, Ltd. | DNA analyzing method |
-
1996
- 1996-04-10 EP EP96912743A patent/EP0830460A1/en not_active Withdrawn
- 1996-04-10 WO PCT/US1996/005136 patent/WO1996032504A2/en active Application Filing
- 1996-04-10 AU AU55446/96A patent/AU5544696A/en not_active Abandoned
- 1996-04-10 JP JP8531243A patent/JPH11503611A/en not_active Ceased
- 1996-04-10 CA CA 2218188 patent/CA2218188A1/en not_active Abandoned
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1994011530A1 (en) * | 1992-11-06 | 1994-05-26 | Trustees Of Boston University | Positional sequencing by hybridization |
WO1994016101A2 (en) * | 1993-01-07 | 1994-07-21 | Koester Hubert | Dna sequencing by mass spectrometry |
EP0630972A2 (en) * | 1993-06-25 | 1994-12-28 | Hitachi, Ltd. | DNA analyzing method |
Non-Patent Citations (6)
Title |
---|
BROUDE ET AL.: "Enhanced DNA sequencing by hybridisation", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, vol. 91, April 1994 (1994-04-01), WASHINGTON US, pages 3072 - 3076, XP002013927 * |
FU ET AL.: "Efficient preparation of short DNA sequence ladders potentially suitable for MALDI-TOF DNA sequencing", GENETIC ANALYSIS, vol. 12, January 1996 (1996-01-01), pages 137 - 142, XP000602230 * |
KHRAPKO ET AL.: "A method for DNA sequencing by hybridization with oligonucleotide matrix", DNA SEQUENCE, (1991) 1 (6) 375-88., XP000391524 * |
KHRAPKO K R ET AL: "AN OLIGONUCLEOTIDE HYBRIDIZATION APPROACH TO DNA SEQUENCING", FEBS LETTERS, vol. 256, no. 1 - 02, 9 October 1989 (1989-10-09), pages 118 - 122, XP000304574 * |
LYSOV ET AL.: "DNA sequencing by hybridisation to oligonucleotide matrix. Calculation of continuous stacking hybridisation efficiency", J BIOMOLEC STRUCT DYNAM, vol. 11, no. 4, February 1994 (1994-02-01), pages 797 - 812, XP000602231 * |
W. BAINS: "DNA sequencing by mass spectrometry. Outline of a potential future application", CHIMICAOGGI, October 1991 (1991-10-01), pages 13 - 16, XP002013928 * |
Cited By (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
USRE44693E1 (en) | 1996-11-06 | 2014-01-07 | Sequenom, Inc. | Beads bound to a solid support and to nucleic acids |
US8993271B2 (en) | 1997-04-01 | 2015-03-31 | Illumina, Inc. | Method of nucleic acid amplification |
US8999266B2 (en) | 2000-10-30 | 2015-04-07 | Agena Bioscience, Inc. | Method and apparatus for delivery of submicroliter volumes onto a substrate |
US9034798B2 (en) | 2003-01-16 | 2015-05-19 | Caprotec Bioanalytics Gmbh | Capture compounds, collections thereof and methods for analyzing the proteome and complex compositions |
US9394565B2 (en) | 2003-09-05 | 2016-07-19 | Agena Bioscience, Inc. | Allele-specific sequence variation analysis |
US9249456B2 (en) | 2004-03-26 | 2016-02-02 | Agena Bioscience, Inc. | Base specific cleavage of methylation-specific amplification products in combination with mass analysis |
US9512478B2 (en) | 2007-02-02 | 2016-12-06 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
Also Published As
Publication number | Publication date |
---|---|
EP0830460A1 (en) | 1998-03-25 |
JPH11503611A (en) | 1999-03-30 |
CA2218188A1 (en) | 1996-10-17 |
WO1996032504A2 (en) | 1996-10-17 |
AU5544696A (en) | 1996-10-30 |
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