US20230279050A1 - Control of Copolymer Compositions - Google Patents
Control of Copolymer Compositions Download PDFInfo
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- US20230279050A1 US20230279050A1 US17/957,579 US202217957579A US2023279050A1 US 20230279050 A1 US20230279050 A1 US 20230279050A1 US 202217957579 A US202217957579 A US 202217957579A US 2023279050 A1 US2023279050 A1 US 2023279050A1
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- glatiramer acetate
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- 229920001577 copolymer Polymers 0.000 title claims abstract description 36
- 239000000203 mixture Substances 0.000 title description 9
- 238000000034 method Methods 0.000 claims abstract description 22
- 108010072051 Glatiramer Acetate Proteins 0.000 claims description 75
- FHEAIOHRHQGZPC-KIWGSFCNSA-N acetic acid;(2s)-2-amino-3-(4-hydroxyphenyl)propanoic acid;(2s)-2-aminopentanedioic acid;(2s)-2-aminopropanoic acid;(2s)-2,6-diaminohexanoic acid Chemical compound CC(O)=O.C[C@H](N)C(O)=O.NCCCC[C@H](N)C(O)=O.OC(=O)[C@@H](N)CCC(O)=O.OC(=O)[C@@H](N)CC1=CC=C(O)C=C1 FHEAIOHRHQGZPC-KIWGSFCNSA-N 0.000 claims description 71
- 229960003776 glatiramer acetate Drugs 0.000 claims description 71
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 claims description 43
- ODHCTXKNWHHXJC-VKHMYHEASA-N 5-oxo-L-proline Chemical compound OC(=O)[C@@H]1CCC(=O)N1 ODHCTXKNWHHXJC-VKHMYHEASA-N 0.000 claims description 40
- 239000000047 product Substances 0.000 claims description 31
- KDXKERNSBIXSRK-YFKPBYRVSA-N L-lysine Chemical compound NCCCC[C@H](N)C(O)=O KDXKERNSBIXSRK-YFKPBYRVSA-N 0.000 claims description 20
- OUYCCCASQSFEME-QMMMGPOBSA-N L-tyrosine Chemical compound OC(=O)[C@@H](N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-QMMMGPOBSA-N 0.000 claims description 20
- 235000018977 lysine Nutrition 0.000 claims description 11
- 150000002669 lysines Chemical class 0.000 claims description 11
- 229960004441 tyrosine Drugs 0.000 claims description 11
- QNAYBMKLOCPYGJ-UHFFFAOYSA-N D-alpha-Ala Natural products CC([NH3+])C([O-])=O QNAYBMKLOCPYGJ-UHFFFAOYSA-N 0.000 claims description 10
- QNAYBMKLOCPYGJ-UWTATZPHSA-N L-Alanine Natural products C[C@@H](N)C(O)=O QNAYBMKLOCPYGJ-UWTATZPHSA-N 0.000 claims description 10
- 235000019766 L-Lysine Nutrition 0.000 claims description 10
- QNAYBMKLOCPYGJ-REOHCLBHSA-N L-alanine Chemical compound C[C@H](N)C(O)=O QNAYBMKLOCPYGJ-REOHCLBHSA-N 0.000 claims description 10
- 239000004472 Lysine Substances 0.000 claims description 10
- 229960003767 alanine Drugs 0.000 claims description 10
- -1 benzyl-protected L-glutamic acid Chemical class 0.000 claims description 10
- WROMPOXWARCANT-UHFFFAOYSA-N tfa trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F.OC(=O)C(F)(F)F WROMPOXWARCANT-UHFFFAOYSA-N 0.000 claims description 8
- NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 claims description 7
- 230000000379 polymerizing effect Effects 0.000 claims description 7
- 229940043131 pyroglutamate Drugs 0.000 claims description 6
- 230000002255 enzymatic effect Effects 0.000 claims description 4
- 239000000413 hydrolysate Substances 0.000 claims description 4
- 241000205156 Pyrococcus furiosus Species 0.000 claims description 2
- 108090000919 Pyroglutamyl-Peptidase I Proteins 0.000 claims description 2
- 238000004366 reverse phase liquid chromatography Methods 0.000 claims description 2
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 66
- 238000012691 depolymerization reaction Methods 0.000 description 31
- CPELXLSAUQHCOX-UHFFFAOYSA-N Hydrogen bromide Chemical compound Br CPELXLSAUQHCOX-UHFFFAOYSA-N 0.000 description 15
- 229940024606 amino acid Drugs 0.000 description 15
- 235000001014 amino acid Nutrition 0.000 description 15
- 150000001413 amino acids Chemical class 0.000 description 10
- 238000004519 manufacturing process Methods 0.000 description 10
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 description 9
- ISWSIDIOOBJBQZ-UHFFFAOYSA-N Phenol Chemical compound OC1=CC=CC=C1 ISWSIDIOOBJBQZ-UHFFFAOYSA-N 0.000 description 5
- 239000000463 material Substances 0.000 description 5
- 108090000765 processed proteins & peptides Proteins 0.000 description 5
- WHUUTDBJXJRKMK-VKHMYHEASA-N L-glutamic acid Chemical compound OC(=O)[C@@H](N)CCC(O)=O WHUUTDBJXJRKMK-VKHMYHEASA-N 0.000 description 4
- 238000006243 chemical reaction Methods 0.000 description 4
- 229940038717 copaxone Drugs 0.000 description 4
- 229920000642 polymer Polymers 0.000 description 4
- 102000004196 processed proteins & peptides Human genes 0.000 description 4
- 238000010511 deprotection reaction Methods 0.000 description 3
- 238000006116 polymerization reaction Methods 0.000 description 3
- 229920001184 polypeptide Polymers 0.000 description 3
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 description 2
- NBIIXXVUZAFLBC-UHFFFAOYSA-N Phosphoric acid Chemical compound OP(O)(O)=O NBIIXXVUZAFLBC-UHFFFAOYSA-N 0.000 description 2
- 159000000021 acetate salts Chemical class 0.000 description 2
- 239000008186 active pharmaceutical agent Substances 0.000 description 2
- 238000003776 cleavage reaction Methods 0.000 description 2
- 229940088679 drug related substance Drugs 0.000 description 2
- 230000000694 effects Effects 0.000 description 2
- 229960002989 glutamic acid Drugs 0.000 description 2
- 238000004128 high performance liquid chromatography Methods 0.000 description 2
- 229960003646 lysine Drugs 0.000 description 2
- 239000008194 pharmaceutical composition Substances 0.000 description 2
- 238000002360 preparation method Methods 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- BMYNFMYTOJXKLE-UHFFFAOYSA-N 3-azaniumyl-2-hydroxypropanoate Chemical compound NCC(O)C(O)=O BMYNFMYTOJXKLE-UHFFFAOYSA-N 0.000 description 1
- LOOZZTFGSTZNRX-VIFPVBQESA-N L-Homotyrosine Chemical compound OC(=O)[C@@H](N)CCC1=CC=C(O)C=C1 LOOZZTFGSTZNRX-VIFPVBQESA-N 0.000 description 1
- 102400001103 Neurotensin Human genes 0.000 description 1
- 101800001814 Neurotensin Proteins 0.000 description 1
- 208000007400 Relapsing-Remitting Multiple Sclerosis Diseases 0.000 description 1
- 229940022663 acetate Drugs 0.000 description 1
- ODHCTXKNWHHXJC-UHFFFAOYSA-N acide pyroglutamique Natural products OC(=O)C1CCC(=O)N1 ODHCTXKNWHHXJC-UHFFFAOYSA-N 0.000 description 1
- 239000004480 active ingredient Substances 0.000 description 1
- 229910000147 aluminium phosphate Inorganic materials 0.000 description 1
- 150000003862 amino acid derivatives Chemical class 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- 238000011026 diafiltration Methods 0.000 description 1
- HPNMFZURTQLUMO-UHFFFAOYSA-N diethylamine Chemical compound CCNCC HPNMFZURTQLUMO-UHFFFAOYSA-N 0.000 description 1
- 230000029087 digestion Effects 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 238000002474 experimental method Methods 0.000 description 1
- 238000001914 filtration Methods 0.000 description 1
- 235000013922 glutamic acid Nutrition 0.000 description 1
- 239000004220 glutamic acid Substances 0.000 description 1
- 150000002307 glutamic acids Chemical class 0.000 description 1
- 239000008241 heterogeneous mixture Substances 0.000 description 1
- 239000003999 initiator Substances 0.000 description 1
- 230000014759 maintenance of location Effects 0.000 description 1
- 201000006417 multiple sclerosis Diseases 0.000 description 1
- PCJGZPGTCUMMOT-ISULXFBGSA-N neurotensin Chemical compound C([C@@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CC(C)C)C(O)=O)NC(=O)[C@H]1N(CCC1)C(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H]1N(CCC1)C(=O)[C@H](CCCCN)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CC=1C=CC(O)=CC=1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H]1NC(=O)CC1)C1=CC=C(O)C=C1 PCJGZPGTCUMMOT-ISULXFBGSA-N 0.000 description 1
- 239000000816 peptidomimetic Substances 0.000 description 1
- 229920002643 polyglutamic acid Polymers 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 239000011541 reaction mixture Substances 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- 238000000926 separation method Methods 0.000 description 1
- 125000004044 trifluoroacetyl group Chemical group FC(C(=O)*)(F)F 0.000 description 1
- OUYCCCASQSFEME-UHFFFAOYSA-N tyrosine Natural products OC(=O)C(N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-UHFFFAOYSA-N 0.000 description 1
- 238000000108 ultra-filtration Methods 0.000 description 1
- 239000003643 water by type Substances 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
- C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
- C07K5/10—Tetrapeptides
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/001—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof by chemical synthesis
Definitions
- Glatiramer acetate (also known as copolymer-1 and marketed as the active ingredient in COPAXONE® by Teva Pharmaceutical Industries Ltd., Israel) is used in the treatment of the relapsing-remitting form of multiple sclerosis (RRMS).
- glatiramer acetate (GA) consists of the acetate salts of synthetic polypeptides containing four naturally occurring amino acids: L-glutamic acid, L-alanine, L-tyrosine, and L-lysine with a reported average molar fraction of 0.141, 0.427, 0.095, and 0.338, respectively.
- glatiramer acetate is designated L-glutamic acid polymer with L-alanine, L-lysine and L-tyrosine, acetate (salt). Its structural formula is:
- the invention is based, at least in part, on the identification of methods for controlling the level of L-pyroGlutamic Acid (pyro-Glu) in glatiramer acetate (GA).
- Pyro-Glu is present in GA, and the ability to control the level of pyro-Glu in GA is useful in controlling both product and process quality in the manufacture of GA.
- Described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product (Intermediate-3) and further processing the Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: having water present during at least a portion of the depolymerization step.
- Also described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); and treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product (Intermediate-3); and further processing the Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: adjusting the water present during at least a portion of the depolymerization step so that amount water is present during at least a
- Also described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); treating the partially depolymerized, benzyl-deprotected product to deprotect TFA-protected lysines thereby generating acetate TFA-deprotected product (Intermediate-3); and further processing Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: controlling the water present during at least a portion of the depolymerization step so that amount
- water is present, adjusted or controlled at the beginning of the depolymerization step; water is added during the depolymerization step; the water present during the depolymerization step is present within a predetermined range (e.g., the predetermined range is 4 - 25%, 5 - 25%, 4-20%, 4-16%, 7-15%, 8-14%, 9-13%, 10-12%, 13 - 19%, 14 - 18% w/w against Intermediate-1); the depolymerization proceeds for 16-64 hrs, preferably at least 25 hrs (e.g., 25-55 hrs, at least 30 hrs, 30-50 hrs, at least 40 hrs, 43-47 hrs); the depolymerization reaction is carried out at 17-35° C., e.g., 18-30° C., 18-22° C.; the depolymerization step comprises contacting the protected copolymer with a solution comprising phenol, HBr and acetic acid; the concentration of pyro
- the improvement further comprises: preparing a pharmaceutical composition comprising at least a portion of the purified glatiramer acetate; and in some cases the method further includes measuring the amount of water in the depolymerization step at least once.
- a method for preparing a composition comprising glatiramer acetate comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product; and processing the TFA-deprotected product to create glatiramer acetate, wherein water is present during at least a portion of the depolymerization step.
- TFA trifluoroacetic acid
- An additional method is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating glatiramer acetate; and purifying the glatiramer acetate to create purified glatiramer acetate, wherein water is present during at least a portion of the depolymerization step within a predetermined range.
- TFA trifluoroacetic acid
- An additional described method is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product; and processing the a TFA-deprotected product to create glatiramer acetate, wherein the water present during at least a portion of the depolymerization step is controlled to be within a predetermined range.
- TFA trifluoroacetic acid
- water is present, adjusted or controlled at the beginning of the depolymerization step; water is added during the depolymerization step; the water present during the depolymerization step is present within a predetermined range (e.g., the predetermined range is 4 - 25%, 5 - 25%, 13 - 19%, 14 - 18% w/w against Intermediate-1); the depolymerization proceeds for at least 25 hrs (e.g., at least 30 hrs or at least 40 hrs); the depolymerization step comprises contacting the protected copolymer with a solution comprising phenol, HBr and acetic acid; the concentration of pyroglu in the purified glatiramer acetate is 2000-7000 ppm (e.g., 2500-6000 ppm; 2500-5500 ppm; 3000-5000 ppm; 3500-4500 ppm, 2400-6500 ppm (0.24%-0.65% w/w); the Mp of the purified
- a “copolymer”, “amino acid copolymer” or “amino acid copolymer preparation” is a heterogeneous mixture of polypeptides comprising a defined plurality of different amino acids (typically between 2-10, e.g., between 3-6, different amino acids).
- a copolymer may be prepared from the polymerization of individual amino acids.
- the term “amino acid” is not limited to naturally occurring amino acids, but can include amino acid derivatives and/or amino acid analogs.
- one or more of the amino acids can be a homotyrosine.
- an amino acid copolymer having one or more non-peptide or peptidomimetic bonds between two adjacent residues is included within this definition.
- FIG. 1 depicts the structure of pyro-Glu.
- FIG. 2 is a graph depicting the results of studies on the effect of the presence water in the depolymerization reaction used in glatiramer acetate production.
- the production of GA entails polymerization of amino acids to produce a mixture of peptides, referred to as Intermediate-1, followed by partial depolymerization and deprotection of Intermediate-1 to yield Intermediate-2. It has now been found that the level of pyro-Glu in GA can be effectively controlled by controlling the water present during the depolymerization step of the GA manufacturing process, for example, by adjusting the water content at the beginning of and/or during the depolymerization step, e.g., by adding water to a predetermined level at the beginning or during the depolymerization step.
- the pyro-Glu content of copolymer or GA be 2000 to 7000 ppm, e.g., 2500-5500 ppm, e.g., 3000-5000 ppm, e.g., 3500-4500 ppm, 2400-6500 ppm, and the water present during the depolymerization reaction or added at the end of the depolymerization reaction is preferably controlled or adjusted to achieve this specified pyro-Glu content.
- the peak molecular weight (Mp) of GA be 5,000 to 9,000 Da, e.g., 6,000 to 8,000 Da, as measured as described in U.S. Pat. 7,074,580.
- the process for the manufacture of glatiramer acetate includes the following steps:
- Step 1 of GA manufacture the NCAs are co-polymerized in a predetermined ratio using diethylamine as an initiator. Upon consumption of the NCA components, the reaction mixture is quenched in water. The resulting protected polymer (Intermediate-1) is isolated and dried.
- Step 2 of GA manufacture Intermediate-1 is treated with phenol-treated 33% HBr in acetic acid (HBr/AcOH). This results in the cleavage of the benzyl protecting group on the glutamic acids as well as cleavage of peptide bonds throughout the polymer. After a period of time the reaction is quenched with water, and the product polymer is isolated by filtration and washed with water.
- the product polymer, Intermediate-2 has a reduced molecular weight relative to Intermediate-1.
- Intermediate-2 is dried before proceeding to Step 3.
- Step 3 Intermediate-2 is treated with aqueous piperidine to remove the trifluoroacetyl group on the lysines.
- the resulting copolymer, Intermediate-3 is subsequently purified using diafiltration/ultrafiltration and the resulting acetate salt is dried to produce Glatiramer Acetate drug substance.
- GA with a pyro-Glu content of about 4,000 ppm and a peak molecular weight (Mp) about 7,000 Da can prepared by having water present in the depolymerization reaction at about 16% w/w against Intermediate-1. While the amount of water present is expressed here relative to the amount Intermediate 1, the amount of water present can be expressed in any convenient manner, for example: w/w against the weight of Intermediate-1 added to the depolymerization reaction; w/w against the weight of phenol used to treat the HBr/acetic acid added to depolymerization reaction; w/w against the total weight of HBr/acetic acid added to depolymerization reaction; v/v against the total volume of HBr/acetic acid added to the depolymerization reaction; or w/w against the total weight of the depolymerization reaction.
- the amount of water present relative to HBr/AcOH on a v/v basis can be calculated from the amount of water present relative to Intermediate-1 on a w
- the water present during the depolymerization reaction can include water present in the Intermediate-1 added to the depolymerization reaction (e.g., by using Intermediate-1 that is not fully dried) and/or water that is added at the beginning or during the depolymerization reaction.
- the amount of water present during at least a portion of the depolymerization reaction can be controlled by adding water to the reaction to achieve a predetermined level of water or by having a certain amount of water present in the Intermediate-1 added to the reaction or by a combination of adding water and having water present in the Intermediate-1.
- the amount of water present can be controlled by simply having a reasonably consistent amount of water present in the Intermediate-1.
- Water can be added to the depolymerization reaction at any time, but is most often present at a predetermined level, e.g., 4 - 25%, 5-25%, 10-20%, 4-20%, 4-16%, 7-15%, 8-14%, 9-13%, 10-12%, 13-19%, 14-18%, 15-17%, or 16% w/w against the weight of Intermediate-1, at the beginning of the depolymerization reaction. Because the depolymerization reaction can both consume and produce water, the amount of water present can change slightly over the course of the depolymerization reaction.
- the amount of water present during the depolymerization step can impact the pyroGlu content and molecular weight of the resulting GA, as shown by the experiments described below. However, the amount of water present during the depolymerization step can vary over a reasonable range and still be compatible with the production of GA having a desirable pyro-Glu content and molecular weight.
- Step 2 The effect of water present during the depolymerization step, Step 2, on the pyroGlu content and molecular weight of the resulting GA was examined as follows. Intermediate-1 was produced as described above and divided between two depolymerization reactions (A and B). For Depolymerization reaction A, no water was added. For Depolymerization reaction B, water was added to 16% measured w/w against Intermediate-1. Depolymerization was allowed to proceed at 20° C. Aliquots removed periodically from each reaction were quenched with water and further processed to produce GA. The pyro-Glu content (ppm), measured as described below, and peak molecular weight (Mp) of each of the resulting GA samples were measured. The results of this analysis are shown in FIG. 2 .
- the molecular weight (Mp) scale (Da) is on the left axis
- the pyro-Glu concentration scale (ppm) is on the right axis.
- the time of Depolymerization reaction A no added water
- the time of Depolymerization reaction B water present at 16% w/w against intermediate-1) is on the lower horizontal axis.
- the scale of the graph is such that the horizontal line labeled “Midpoint of desired range of GPC-Mp (Da)/Midpoint of the desired range of pyroGlu (ppm)” indicates both one desirable Mp molecular weight (7,000 Da) and one desirable pyro-Glu concentration for GA (4,000 ppm).
- the lines labeled MW A and MW B depict the Mp molecular weight of the GA produced from material removed from Depolymerization reaction A and Depolymerization reaction B, respectively, at various time points.
- the lines labeled Py A and Py B depict the concentration pyro-Glu in the GA produced from material removed from Depolymerization reaction A and Depolymerization reaction B, respectively, at various time points.
- pyro-Glu concentration of GA was measured as follows. N-terminal pyro-Glu residues were cleaved using Pyrococcus furiosus pyro-glutamate aminopeptidase. Pyro-Glu in the resulting enzymatic hydrolysate is isolated by reverse phase liquid chromatography followed by detection at 200 nm using a reference standard curve prepared with known concentrations of L-Pyro-glutamate. Neurotensin (a commercially available polypeptide having 100% pyro-glutamate at the N-terminus) is assayed as a control to ensure the acceptability of the digestion and adequacy of the HPLC separation.
- the chromatographic analysis is performed using a Waters Atlantis C18 HPLC column and an isocratic mobile phase consisting of 100% Water, adjusted to pH 2.1 with phosphoric acid. Samples and Standards are held at 2-8° C. The peak corresponding to the pyro-glutamate moiety elutes at a retention time of approximately 12 minutes. The direct measure of pyro-glutamate content is on a w/w basis and the results are expressed as ppm (microgram/gram).
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Abstract
Methods of making copolymers are described.
Description
- This application is a continuation and claims priority to U.S. Application Serial No. 16/786,981, filed on Feb. 10, 2022, which is a continuation of U.S. Application Serial No. 15/980,478, filed on May 15, 2018, which is a continuation of U.S. Application Serial No. 14/514,320, filed Oct. 14, 2014, which is a continuation of U.S. Application Serial No. 13/187,243, filed on Jul. 20, 2011, which is a continuation of U.S. Application Serial No. 12/754,344, filed on Apr. 5, 2010, and claims priority to U.S. Provisional Application Serial No. 61/166,608, filed on Apr. 3, 2009 and U.S. Provisional Application Serial No. 61/247,321, filed on Sep. 30, 2009, all of which are hereby incorporated by reference.
- Glatiramer acetate (also known as copolymer-1 and marketed as the active ingredient in COPAXONE® by Teva Pharmaceutical Industries Ltd., Israel) is used in the treatment of the relapsing-remitting form of multiple sclerosis (RRMS). According to the COPAXONE® product label, glatiramer acetate (GA) consists of the acetate salts of synthetic polypeptides containing four naturally occurring amino acids: L-glutamic acid, L-alanine, L-tyrosine, and L-lysine with a reported average molar fraction of 0.141, 0.427, 0.095, and 0.338, respectively. Chemically, glatiramer acetate is designated L-glutamic acid polymer with L-alanine, L-lysine and L-tyrosine, acetate (salt). Its structural formula is:
- The invention is based, at least in part, on the identification of methods for controlling the level of L-pyroGlutamic Acid (pyro-Glu) in glatiramer acetate (GA). Pyro-Glu is present in GA, and the ability to control the level of pyro-Glu in GA is useful in controlling both product and process quality in the manufacture of GA.
- Described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product (Intermediate-3) and further processing the Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: having water present during at least a portion of the depolymerization step.
- Also described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); and treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product (Intermediate-3); and further processing the Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: adjusting the water present during at least a portion of the depolymerization step so that amount water is present during at least a portion of the depolymerization step is within a predetermined range.
- Also described herein is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1); treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized, benzyl-deprotected product (Intermediate-2); treating the partially depolymerized, benzyl-deprotected product to deprotect TFA-protected lysines thereby generating acetate TFA-deprotected product (Intermediate-3); and further processing Intermediate-3 to create glatiramer acetate, wherein the improvement comprises: controlling the water present during at least a portion of the depolymerization step so that amount water is present during at least a portion of the depolymerization step is within a predetermined range.
- In various embodiments of the forgoing methods: water is present, adjusted or controlled at the beginning of the depolymerization step; water is added during the depolymerization step; the water present during the depolymerization step is present within a predetermined range (e.g., the predetermined range is 4 - 25%, 5 - 25%, 4-20%, 4-16%, 7-15%, 8-14%, 9-13%, 10-12%, 13 - 19%, 14 - 18% w/w against Intermediate-1); the depolymerization proceeds for 16-64 hrs, preferably at least 25 hrs (e.g., 25-55 hrs, at least 30 hrs, 30-50 hrs, at least 40 hrs, 43-47 hrs); the depolymerization reaction is carried out at 17-35° C., e.g., 18-30° C., 18-22° C.; the depolymerization step comprises contacting the protected copolymer with a solution comprising phenol, HBr and acetic acid; the concentration of pyroglu in the purified glatiramer acetate is 2000-7000 ppm (e.g., 2500-6000 ppm; 2500-5500 ppm; 3000-5000 ppm; 3500-4500 ppm, 2400-6500 ppm); the Mp of the purified glatiramer acetate is 5,000-9,000 Da (e.g., 6,500-7,500 Da); in one embodiment water is present during the depolymerization step at 11.2% w/w against Intermediate-1, the depolymerization proceeds for 43-47 hrs at 18-22° C. and the process produces purified glatiramer acetate in which pyroGlu is present at 0.24-0.65 % w/w (2400-6500 ppm). The improvement further comprises: preparing a pharmaceutical composition comprising at least a portion of the purified glatiramer acetate; and in some cases the method further includes measuring the amount of water in the depolymerization step at least once.
- Also described is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product; and processing the TFA-deprotected product to create glatiramer acetate, wherein water is present during at least a portion of the depolymerization step.
- An additional method is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating glatiramer acetate; and purifying the glatiramer acetate to create purified glatiramer acetate, wherein water is present during at least a portion of the depolymerization step within a predetermined range.
- An additional described method is a method for preparing a composition comprising glatiramer acetate, comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer; treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups thereby generating a partially depolymerized product; treating the partially depolymerized product to deprotect TFA-protected lysines thereby generating a TFA-deprotected product; and processing the a TFA-deprotected product to create glatiramer acetate, wherein the water present during at least a portion of the depolymerization step is controlled to be within a predetermined range.
- In various embodiments of the foregoing methods: water is present, adjusted or controlled at the beginning of the depolymerization step; water is added during the depolymerization step; the water present during the depolymerization step is present within a predetermined range (e.g., the predetermined range is 4 - 25%, 5 - 25%, 13 - 19%, 14 - 18% w/w against Intermediate-1); the depolymerization proceeds for at least 25 hrs (e.g., at least 30 hrs or at least 40 hrs); the depolymerization step comprises contacting the protected copolymer with a solution comprising phenol, HBr and acetic acid; the concentration of pyroglu in the purified glatiramer acetate is 2000-7000 ppm (e.g., 2500-6000 ppm; 2500-5500 ppm; 3000-5000 ppm; 3500-4500 ppm, 2400-6500 ppm (0.24%-0.65% w/w); the the Mp of the purified glatiramer acetate is 5,000-9,000 Da (e.g., 6,500-7,500 Da); the improvement further comprises: preparing a pharmaceutical composition comprising at least a portion of the purified glatiramer acetate; the step of treating the partially depolymerized product to deprotect TFA-protected lysines comprises treating the depolymerized product with piperidine; the protected copolymer is isolated and at least partially dried prior to treating the protected copolymer to partially depolymerize the protected copolymer and deprotect benzyl protected groups; the partially depolymerized product is isolated and at least partially dried prior to the step of treating the partially depolymerized product to deprotect TFA-protected lysines; in some cases the method further includes measuring the amount of water in the depolymerization step at least once.
- As used herein, a “copolymer”, “amino acid copolymer” or “amino acid copolymer preparation” is a heterogeneous mixture of polypeptides comprising a defined plurality of different amino acids (typically between 2-10, e.g., between 3-6, different amino acids). A copolymer may be prepared from the polymerization of individual amino acids. The term “amino acid” is not limited to naturally occurring amino acids, but can include amino acid derivatives and/or amino acid analogs. For example, in an amino acid copolymer comprising tyrosine amino acids, one or more of the amino acids can be a homotyrosine. Further, an amino acid copolymer having one or more non-peptide or peptidomimetic bonds between two adjacent residues is included within this definition.
-
FIG. 1 depicts the structure of pyro-Glu. -
FIG. 2 is a graph depicting the results of studies on the effect of the presence water in the depolymerization reaction used in glatiramer acetate production. - Other than a statement about molecular weight and amino acid composition, which are recited in the FDA-approved label for the product, the label and other available literature for COPAXONE® does not provide detailed information about the physiochemical characteristics of the product. It has been previously found that Pyro-Glu (
FIG. 1 ) is a component of Copaxone® (glatiramer acetate or GA) that is present within a predetermined range (US Serial No. 12/408,058). For example, in many cases the pyro-Glu content of a GA preparation can be between 2000 ppm and 7000 ppm or 2400-6500 ppm. - The production of GA entails polymerization of amino acids to produce a mixture of peptides, referred to as Intermediate-1, followed by partial depolymerization and deprotection of Intermediate-1 to yield Intermediate-2. It has now been found that the level of pyro-Glu in GA can be effectively controlled by controlling the water present during the depolymerization step of the GA manufacturing process, for example, by adjusting the water content at the beginning of and/or during the depolymerization step, e.g., by adding water to a predetermined level at the beginning or during the depolymerization step. Moreover, it has now been found that by properly controlling (e.g., adjusting) the amount of water present during the depolymerization step and the duration of the depolymerization step it is possible to produce GA with a specified pyro-Glu content and a specified peak molecular weight (Mp). In many cases it is specified to have the pyro-Glu content of copolymer or GA be 2000 to 7000 ppm, e.g., 2500-5500 ppm, e.g., 3000-5000 ppm, e.g., 3500-4500 ppm, 2400-6500 ppm, and the water present during the depolymerization reaction or added at the end of the depolymerization reaction is preferably controlled or adjusted to achieve this specified pyro-Glu content. In many cases it is desirable to have the peak molecular weight (Mp) of GA be 5,000 to 9,000 Da, e.g., 6,000 to 8,000 Da, as measured as described in U.S. Pat. 7,074,580.
- Generally, the process for the manufacture of glatiramer acetate includes the following steps:
- Step 1: polymerization of N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine (collectively referred to as NCAs) to result in a protected copolymer (Intermediate-1),
- Step 2: depolymerization and benzyl deprotection of Intermediate-1 using hydrobromic acid in acetic acid (e.g., phenol treated 33% HBr/acetic acid), and
- Step 3: deprotection of the TFA-protected lysines on Intermediate-2 (e.g., by treatment with piperdine) to create Intermediate-3, followed by processing to generate GA and further purification and drying of the isolated GA drug substance.
- In Step 1 of GA manufacture, the NCAs are co-polymerized in a predetermined ratio using diethylamine as an initiator. Upon consumption of the NCA components, the reaction mixture is quenched in water. The resulting protected polymer (Intermediate-1) is isolated and dried. In Step 2 of GA manufacture, Intermediate-1 is treated with phenol-treated 33% HBr in acetic acid (HBr/AcOH). This results in the cleavage of the benzyl protecting group on the glutamic acids as well as cleavage of peptide bonds throughout the polymer. After a period of time the reaction is quenched with water, and the product polymer is isolated by filtration and washed with water. The product polymer, Intermediate-2, has a reduced molecular weight relative to Intermediate-1. Intermediate-2 is dried before proceeding to Step 3. In Step 3, Intermediate-2 is treated with aqueous piperidine to remove the trifluoroacetyl group on the lysines. The resulting copolymer, Intermediate-3, is subsequently purified using diafiltration/ultrafiltration and the resulting acetate salt is dried to produce Glatiramer Acetate drug substance.
- Methods for the manufacture of GA are described in the following publications: U.S. Pat. No. 3,849,550; WO 95/031990 and US 2007-0021324.
- As shown below, GA with a pyro-Glu content of about 4,000 ppm and a peak molecular weight (Mp) about 7,000 Da can prepared by having water present in the depolymerization reaction at about 16% w/w against Intermediate-1. While the amount of water present is expressed here relative to the amount Intermediate 1, the amount of water present can be expressed in any convenient manner, for example: w/w against the weight of Intermediate-1 added to the depolymerization reaction; w/w against the weight of phenol used to treat the HBr/acetic acid added to depolymerization reaction; w/w against the total weight of HBr/acetic acid added to depolymerization reaction; v/v against the total volume of HBr/acetic acid added to the depolymerization reaction; or w/w against the total weight of the depolymerization reaction. Thus, the amount of water present relative to HBr/AcOH on a v/v basis can be calculated from the amount of water present relative to Intermediate-1 on a w/w basis as follows:
-
- The water present during the depolymerization reaction can include water present in the Intermediate-1 added to the depolymerization reaction (e.g., by using Intermediate-1 that is not fully dried) and/or water that is added at the beginning or during the depolymerization reaction. Thus, the amount of water present during at least a portion of the depolymerization reaction can be controlled by adding water to the reaction to achieve a predetermined level of water or by having a certain amount of water present in the Intermediate-1 added to the reaction or by a combination of adding water and having water present in the Intermediate-1. Thus, the amount of water present can be controlled by simply having a reasonably consistent amount of water present in the Intermediate-1. Water can be added to the depolymerization reaction at any time, but is most often present at a predetermined level, e.g., 4 - 25%, 5-25%, 10-20%, 4-20%, 4-16%, 7-15%, 8-14%, 9-13%, 10-12%, 13-19%, 14-18%, 15-17%, or 16% w/w against the weight of Intermediate-1, at the beginning of the depolymerization reaction. Because the depolymerization reaction can both consume and produce water, the amount of water present can change slightly over the course of the depolymerization reaction.
- The amount of water present during the depolymerization step can impact the pyroGlu content and molecular weight of the resulting GA, as shown by the experiments described below. However, the amount of water present during the depolymerization step can vary over a reasonable range and still be compatible with the production of GA having a desirable pyro-Glu content and molecular weight.
- The effect of water present during the depolymerization step, Step 2, on the pyroGlu content and molecular weight of the resulting GA was examined as follows. Intermediate-1 was produced as described above and divided between two depolymerization reactions (A and B). For Depolymerization reaction A, no water was added. For Depolymerization reaction B, water was added to 16% measured w/w against Intermediate-1. Depolymerization was allowed to proceed at 20° C. Aliquots removed periodically from each reaction were quenched with water and further processed to produce GA. The pyro-Glu content (ppm), measured as described below, and peak molecular weight (Mp) of each of the resulting GA samples were measured. The results of this analysis are shown in
FIG. 2 . The molecular weight (Mp) scale (Da) is on the left axis, the pyro-Glu concentration scale (ppm) is on the right axis. The time of Depolymerization reaction A (no added water) is on the upper horizontal axis, and the time of Depolymerization reaction B (water present at 16% w/w against intermediate-1) is on the lower horizontal axis. The scale of the graph is such that the horizontal line labeled “Midpoint of desired range of GPC-Mp (Da)/Midpoint of the desired range of pyroGlu (ppm)” indicates both one desirable Mp molecular weight (7,000 Da) and one desirable pyro-Glu concentration for GA (4,000 ppm). The lines labeled MWA and MWB depict the Mp molecular weight of the GA produced from material removed from Depolymerization reaction A and Depolymerization reaction B, respectively, at various time points. The lines labeled PyA and PyB depict the concentration pyro-Glu in the GA produced from material removed from Depolymerization reaction A and Depolymerization reaction B, respectively, at various time points. - In the absence of added water, the desired combination of molecular weight and pyro-Glu concentration is not achieved. As can be seen in
FIG. 2 , after about 12 hours (scale on upper horizontal axis) Depolymerization reaction A (no added water) produces material that yields GA having a desired pyro-Glu concentration (about 4,000 ppm), but the molecular weight (Mp) of the GA is about 7,400 Da, above the desired 7,000 Da. As can be also seen inFIG. 2 , after about 26 hours (scale on upper horizontal axis) Depolymerization reaction A (no added water) produces material that yields GA having a desired Mp (about 7,000 Da), but the pyro-Glu concentration of the GA is greater than 6,000 ppm, which is above 4,000 ppm (the midpoint of the desired range). In contrast, when water is added to the depolymerization reaction to 16% (w/w against Intermediate-1), the desired combination of molecular weight and pyro-Glu concentration is achieved. As can also be seen fromFIG. 2 , after about 43 hours Depolymerization reaction B (16% water w/w against Intermediate-1) produces material that yields GA having a desired molecular weight (Mp about 7,000 Da) and a desired pyro-Glu concentration (about 4,000 ppm). - In the study described above pyro-Glu concentration of GA was measured as follows. N-terminal pyro-Glu residues were cleaved using Pyrococcus furiosus pyro-glutamate aminopeptidase. Pyro-Glu in the resulting enzymatic hydrolysate is isolated by reverse phase liquid chromatography followed by detection at 200 nm using a reference standard curve prepared with known concentrations of L-Pyro-glutamate. Neurotensin (a commercially available polypeptide having 100% pyro-glutamate at the N-terminus) is assayed as a control to ensure the acceptability of the digestion and adequacy of the HPLC separation. The chromatographic analysis is performed using a Waters Atlantis C18 HPLC column and an isocratic mobile phase consisting of 100% Water, adjusted to pH 2.1 with phosphoric acid. Samples and Standards are held at 2-8° C. The peak corresponding to the pyro-glutamate moiety elutes at a retention time of approximately 12 minutes. The direct measure of pyro-glutamate content is on a w/w basis and the results are expressed as ppm (microgram/gram).
Claims (4)
1. (canceled)
2. A method for determining the pyro-glutamate content of a sample of glatiramer acetate, the method comprising:
digesting a sample of glatiramer acetate with Pyrococcus furiosus pyroglutamate aminopeptidase to create an enzymatic hydrolysate; and
subjecting the enzymatic hydrolysate to reverse phase liquid chromatography to detect and measure the amount of pyroglutamate in the enzymatic hydrolysate thereby determining the pyro-glutamate content of the sample of glatiramer acetate.
3. The method of claim 2 , wherein the glatiramer acetate has a Mp of 5000- 9000 Da.
4. A method for preparing glatiramer acetate comprising: comprising: polymerizing N-carboxy anhydrides of L-alanine, benzyl-protected L-glutamic acid, trifluoroacetic acid (TFA) protected L-lysine and L-tyrosine to generate a protected copolymer (Intermediate-1);
treating the Intermediate-1 with HBr and acetic acid to partially depolymerize the protected copolymer and deprotect benzyl-protected L-glutamic acid thereby generating a partially depolymerized product;
treating the partially depolymerized product with piperidine to deprotect TFA-protected lysines thereby generating glatiramer acetate;
purifying the glatiramer acetate; and
measuring the pyro-glutamate content of a sample of the purified glatiramer acetate.Priority Applications (1)
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WO2013009864A1 (en) | 2011-07-11 | 2013-01-17 | Momenta Pharmaceuticals, Inc. | Structure assessment of heterogeneous polypeptide mixtures |
WO2013009885A2 (en) | 2011-07-11 | 2013-01-17 | Momenta Pharmaceuticals, Inc. | Evaluation of copolymer diethylamide |
US8575198B1 (en) | 2011-09-07 | 2013-11-05 | Momenta Pharmaceuticals, Inc. | In-process control for the manufacture of glatiramer acetate |
CN104844697B (en) * | 2014-09-26 | 2018-10-23 | 深圳翰宇药业股份有限公司 | The preparation method of acetic acid copaxone |
EP4252629A3 (en) | 2016-12-07 | 2023-12-27 | Biora Therapeutics, Inc. | Gastrointestinal tract detection methods, devices and systems |
US20200306516A1 (en) | 2017-08-14 | 2020-10-01 | Progenity, Inc. | Treatment of a disease of the gastrointestinal tract with glatiramer or a pharmaceutically acceptable salt thereof |
US20190202984A1 (en) * | 2018-01-03 | 2019-07-04 | Kinbio Ltd. | Process of preparing glatiramer acetate |
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2014
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2018
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2020
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2022
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US20200172571A1 (en) | 2020-06-04 |
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EP2414384A1 (en) | 2012-02-08 |
WO2010115175A1 (en) | 2010-10-07 |
ES2523732T3 (en) | 2014-12-01 |
EP2414384B1 (en) | 2014-09-10 |
US8859489B2 (en) | 2014-10-14 |
US20100256039A1 (en) | 2010-10-07 |
EP2414384B2 (en) | 2023-05-03 |
US20110269690A1 (en) | 2011-11-03 |
US8058235B1 (en) | 2011-11-15 |
US20170362273A9 (en) | 2017-12-21 |
US20150105535A1 (en) | 2015-04-16 |
US20180258137A1 (en) | 2018-09-13 |
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