US20220396759A1 - Recombinant yeast and use thereof - Google Patents

Recombinant yeast and use thereof Download PDF

Info

Publication number
US20220396759A1
US20220396759A1 US17/812,157 US202217812157A US2022396759A1 US 20220396759 A1 US20220396759 A1 US 20220396759A1 US 202217812157 A US202217812157 A US 202217812157A US 2022396759 A1 US2022396759 A1 US 2022396759A1
Authority
US
United States
Prior art keywords
seq
stpgmas
cyc1
tef1
synsmfps
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
US17/812,157
Inventor
Xueli Zhang
Luqi HUANG
Zhubo Dai
Dong Wang
Lili Zhang
Juan GUO
Yi Liu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Institute of Materia Medica of CAMS
Tianjin Institute of Industrial Biotechnology of CAS
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Priority to US17/812,157 priority Critical patent/US20220396759A1/en
Assigned to TIANJIN INSTITUTE OF INDUSTRIAL BIOTECHNOLOGY, CHINESE ACADEMY OF SCIENCES, INSTITUTE OF CHINESE MATERIA MEDICA, CHINA ACADEMY OF CHINESE MEDICAL SCIENCES reassignment TIANJIN INSTITUTE OF INDUSTRIAL BIOTECHNOLOGY, CHINESE ACADEMY OF SCIENCES ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: DAI, Zhubo, LIU, YI, WANG, DONG, ZHANG, LILI, ZHANG, XUELI, GUO, JUAN, HUANG, Luqi
Publication of US20220396759A1 publication Critical patent/US20220396759A1/en
Priority to US18/456,333 priority patent/US20240010969A1/en
Abandoned legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/80Vectors or expression systems specially adapted for eukaryotic hosts for fungi
    • C12N15/81Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/14Fungi; Culture media therefor
    • C12N1/16Yeasts; Culture media therefor
    • C12N1/18Baker's yeast; Brewer's yeast
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/14Fungi; Culture media therefor
    • C12N1/16Yeasts; Culture media therefor
    • C12N1/18Baker's yeast; Brewer's yeast
    • C12N1/185Saccharomyces isolates
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1085Transferases (2.) transferring alkyl or aryl groups other than methyl groups (2.5)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/88Lyases (4.)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P5/00Preparation of hydrocarbons or halogenated hydrocarbons
    • C12P5/002Preparation of hydrocarbons or halogenated hydrocarbons cyclic
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P5/00Preparation of hydrocarbons or halogenated hydrocarbons
    • C12P5/007Preparation of hydrocarbons or halogenated hydrocarbons containing one or more isoprene units, i.e. terpenes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y205/00Transferases transferring alkyl or aryl groups, other than methyl groups (2.5)
    • C12Y205/01Transferases transferring alkyl or aryl groups, other than methyl groups (2.5) transferring alkyl or aryl groups, other than methyl groups (2.5.1)
    • C12Y205/0101(2E,6E)-Farnesyl diphosphate synthase (2.5.1.10), i.e. geranyltranstransferase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y402/00Carbon-oxygen lyases (4.2)
    • C12Y402/03Carbon-oxygen lyases (4.2) acting on phosphates (4.2.3)
    • C12Y402/03023Germacrene-A synthase (4.2.3.23)
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2500/00Specific components of cell culture medium
    • C12N2500/05Inorganic components
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2500/00Specific components of cell culture medium
    • C12N2500/05Inorganic components
    • C12N2500/10Metals; Metal chelators
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2500/00Specific components of cell culture medium
    • C12N2500/30Organic components
    • C12N2500/32Amino acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2500/00Specific components of cell culture medium
    • C12N2500/30Organic components
    • C12N2500/34Sugars
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2500/00Specific components of cell culture medium
    • C12N2500/30Organic components
    • C12N2500/38Vitamins
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12RINDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
    • C12R2001/00Microorganisms ; Processes using microorganisms
    • C12R2001/645Fungi ; Processes using fungi
    • C12R2001/85Saccharomyces
    • C12R2001/865Saccharomyces cerevisiae

Definitions

  • a Sequence Listing submitted as an ASCII text file via EFS-Web is hereby incorporated by reference in accordance with 35 U.S.C. ⁇ 1.52(e).
  • the name of the ASCII text file for the Sequence Listing is 19NWT0002-Sequence Listing-Updated.txt, the date of creation of the ASCII text file is Sep. 15, 2021, and the size of the ASCII text file is 34.9 KB.
  • the present invention relates to the field of biochemical industry, in particular to a recombinant strain, and synthesizing ⁇ -elemene according to a recombinant microbial method.
  • ⁇ -elemene (beta-elemene) is a volatile sesquiterpene compound with tulip flavor, which is an active pharmaceutical ingredient (API) for first class new cancer drugs of China. At present, it is mainly separated and extracted from plants such as Curcuma aromatica and Curcuma zedoary , but this method has many disadvantages, including low content of ⁇ -elemene and large difference among plants, difficulty in product purification, long plant growth cycle, and serious damage to biological resources, especially wild resources.
  • farnesyl pyrophosphate can be catalyzed by germacrene A synthetase (GMAS) to synthesize germacrene A.
  • GMAS germacrene A synthetase
  • Germacrene A is thermally unstable and prone to intramolecular thermal rearrangement to give ⁇ -elemene.
  • some studies have been carried out on the production of germacrene A, the precursor of ⁇ -elemene, by using recombinant strains, but the yields are low and cannot meet the requirements of industrial applications.
  • Gao Yunyun et al. constructed a biosynthetic pathway of germacrene A in E.
  • An object of the present invention is to provide a recombinant strain.
  • the recombinant strain provided herein is a yeast comprising or expressing germacrene A synthetase or a fusion protein of germacrene A synthetase in vivo.
  • the fusion protein of germacrene A synthetase comprises the germacrene A synthetase and farnesyl pyrophosphate synthase.
  • a nucleic acid encoding the fusion protein comprises a nucleic acid encoding the germacrene A synthetase and a nucleic acid encoding the farnesyl pyrophosphate synthase.
  • the fusion protein has one or more encoding nucleic acids.
  • nucleic acids encoding the fusion protein are derived from different hosts, and at least two nucleic acids encoding the farnesyl pyrophosphate synthase are derived from different hosts.
  • the difference of hosts from which the gene is derived in the present invention means that the hosts from which the gene is originally derived are different.
  • the gene for germacrene A synthetase of the present invention can be obtained by cloning from a plant or microorganism known to contain germacrene A synthetase, for example, it can be selected from Helianthus annuus L., Tanacetum parthenium , lettuce ( Lactuca sativa Linn.), Artemisia carvifolia , cyanobacteria, etc.
  • the gene for farnesyl pyrophosphate synthase can be obtained by cloning from a plant or microorganisms known to contain farnesyl pyrophosphate synthase, for example, it can be selected from Saliva miltiorrhiza , Yeast, Acanthopanax senticosus (Rupr. Maxim.) Harms), Eucommiaulmoides Oliv., etc.
  • the nucleic acid encoding the germacrene A synthetase comprises a nucleic acid represented by SEQ ID NO: 3 or a nucleic acid represented by positions 13-1686 of SEQ ID NO: 12.
  • the nucleic acid encoding the farnesyl pyrophosphate synthase comprises a nucleic acid represented by SEQ ID NO: 2 or a nucleic acid represented by positions 1-1056 of SEQ ID NO: 11.
  • the fusion protein further comprises a linker peptide for linking the germacrene A synthetase with the farnesyl pyrophosphate synthase.
  • the linker peptide is selected from GGGS (SEQ ID NO: 15), YGQ (3A001), PGGH (4A001) (SEQ ID NO: 16), YRSQI (5A002) (SEQ ID NO: 17), VIPFIS (6A005) (SEQ ID NO: 18), FLYLKF (6B004) (SEQ ID NO: 19), WRFSPKLQ (8A005) (SEQ ID NO: 20) or HHVQESQCISTV (12A003) (SEQ ID NO: 21).
  • introducing the nucleic acid encoding the germacrene A synthetase into the yeast is introducing an expression cassette comprising the nucleic acid encoding the germacrene A synthetase into the yeast;
  • Introducing the nucleic acid encoding the fusion protein into the yeast is introducing an expression cassette comprising the nucleic acid encoding the fusion protein into the yeast;
  • the expression cassette comprises the nucleic acid encoding the germacrene A synthetase contains a promoter, a nucleic acid encoding the germacrene A synthetase, and a terminator;
  • the expression cassette comprises the nucleic acid encoding the fusion protein contains a promoter, a nucleic acid encoding the fusion protein, and a terminator;
  • the promoter is selected from TEF1 or MF1 or PGK1; the terminator is CYC1 or ADH1;
  • the promoter is TEF1, and the terminator is CYC1;
  • the promoter is F1, and the terminator is CYC1;
  • the promoter is PGK1 and the terminator is ADH1.
  • the promoter TEF1 comprises the sequence represented by SEQ ID NO: 4; the promoter MF1 comprises the sequence represented by SEQ ID NO: 1; and the terminator CYC1 comprises the sequence represented by SEQ ID NO: 5.
  • the recombinant strain further expresses one or more marker genes; and/or the marker gene is selected from his3 or trp1.
  • the expression cassette comprising the nucleic acid encoding the germacrene A synthetase is introduced into the yeast via a vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase.
  • the expression cassette comprising the nucleic acid encoding the fusion protein is introduced into the yeast via a vector expressing the expression cassette comprising the nucleic acid encoding the fusion protein.
  • the expression cassette of the nucleic acid encoding the germacrene A synthetase is introduced into the yeast in the form of plasmid;
  • the expression cassette of the nucleic acid encoding the fusion protein is introduced into the yeast in the form of plasmid and/or being integrated into a chromosome.
  • the fusion protein is selected from at least one of the following: SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS, SynSmFPS-YGQ-STpGMAS, SynSmFPS-PGGH (SEQ ID NO: 16)-STpGMAS, SynSmFPS-YRSQI (SEQ ID NO: 17)-STpGMAS, SynSmFPS-VIPFIS (SEQ ID NO: 18)-STpGMAS, SynSmFPS-FLYLKF (SEQ ID NO: 19)-STpGMAS, SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)-STpGMAS, SynSmFPS-HHVQESQCISTV (SEQ ID NO: 21)-STpGMAS, SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)-STpGMAS, ERG20-GGGS (SEQ ID NO: 15)-LsLTC2;
  • the fusion protein is preferably SynSmFPS-8A005-STpGMAS;
  • fusion proteins are three kinds of fusion proteins: SynSmFPS-WRFSPKLQ (8A005) (SEQ ID NO: 20)-STpGMAS, ERG20-GGGS (SEQ ID NO: 15)-LsLTC2, SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS;
  • the expression cassette expressing the nucleic acid encoding the fusion protein is selected from at least one of the following:
  • P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)- STpGMAS-T CYC1 , P TEF1 -SynSmFPS-YGQ-STpGMAS-T CYC1 , P TEF1 -SynSmFPS-PGGH (SEQ ID NO: 16)- STpGMAS-T CYC1 , P TEF1 -SynSmFPS-YRSQI (SEQ ID NO: 17)- STpGMAS-T CYC1 P TEF1 -SynSmFPS-VIPFIS (SEQID NO: 18)- STpGMAS-T CYC1 , P TEF1 -SynSmFPS-FLYLKF (SEQ ID NO: 19)- STpGMAS-T CYC1 , P TEF1 -SynSmFPS-WRFSPKLQ (SEQ ID NO: 20) (8A005)-STpGMAS
  • the expression cassette expressing the nucleic acid encoding the fusion protein is preferably P MF1 -SynSmFPS-8A005-STpGMAS-T CYC1 ;
  • Particularly preferred expression cassettes expressing the nucleic acid encoding the fusion protein are the following three kinds: P MF1 -SynSmFPS-8A005-STpGMAS-T CYC1 , P PGK1 -ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-T ADH1 and P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 .
  • the vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase is selected from the following:
  • the vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase is selected from the following:
  • the above gene expression cassette of the fusion protein integrated into the chromosome is selected from P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 and P PGK1 -ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-T ADH1 .
  • the yeast is a strain obtained by increasing content and/or activity of alcohol dehydrogenase, acetaldehyde dehydrogenase and acetyl-CoA synthetase in an original yeast.
  • the strain obtained by increasing the content and/or activity of alcohol dehydrogenase, acetaldehyde dehydrogenase and acetyl-CoA synthetase in the original yeast relates to increasing copy numbers of a nucleic acid encoding the alcohol dehydrogenase, a nucleic acid encoding the acetaldehyde dehydrogenase and a nucleic acid encoding the acetyl-CoA synthetase in the original yeast.
  • increasing copy numbers of the nucleic acid encoding the alcohol dehydrogenase, the nucleic acid encoding the acetaldehyde dehydrogenase and the nucleic acid encoding the acetyl-CoA synthetase in the original yeast is introducing an expression cassette of the nucleic acid encoding the alcohol dehydrogenase, an expression cassette of the nucleic acid encoding the acetaldehyde dehydrogenase, an expression cassette of the nucleic acid encoding the acetyl-CoA synthetase, and another said marker gene (his3) into the original yeast by homologous recombination.
  • the original yeast is Saccharomyces cerevisiae ; and/or said Saccharomyces cerevisiae is Saccharomyces cerevisiae NK2-SQ.
  • One of the marker genes is TRP1; another of the marker genes is HIS3.
  • Gene ADH2 of the above alcohol dehydrogenase comprises the sequence represented by SEQ ID NO: 6
  • gene ALD6 of the acetaldehyde dehydrogenase comprises the sequence represented by SEQ ID NO: 7
  • gene ACS1 of the acetyl-CoA synthetase comprises the sequence represented by SEQ ID NO: 8.
  • the recombinant strains are specifically as follows:
  • Recombinant strain ELE-001 is a strain obtained by introducing pRS313-LEU2-P TEF1 -STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-002 is a strain obtained by introducing pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-011 which is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-012 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-3A001-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-013 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-4A001-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-014 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-5A002-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-015 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-6A005-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-016 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-6B004-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-017 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-8A005-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-018 is a strain obtained by introducing pRS425-LEU2-P TEF1 -SynSmFPS-12A003-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-019 is a strain obtained by introducing pRS425-LEU2-P MF1 -SynSmFPS-8A005-STpGMAS-T CYC1 into yeast FPP-001;
  • Recombinant strain ELE-020 is a strain obtained by introducing pRS425-LEU2-P MF1 -SynSmFPS-8A005-STpGMAS-T CYC1 , and then introducing P PGK1 -ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-T ADH1 , P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 , rDNA-TRP1-up and rDNA-TRP1-down by homologous recombination into yeast FPP-001.
  • the above yeast FPP-001 is a strain obtained by introducing NDT80-HiS3-up, P PGK1 -ADH2-T ADH1 , P TDH3 -ACS1-T TPI1 , P TEF1 -ALD6-T CYC1 and NDT80-HIS3-down into Saccharomyces cerevisiae.
  • recombinant strain ELE-020 is Saccharomyces cerevisiae CGMCC No. 14829, which also falls within the protection scope of the present invention.
  • This recombinant strain ELE-020 is deposited on Oct. 20, 2017 at the China General Microbiological Culture Collection Center, CGMCC.
  • the deposition address is Building 3, No. 1 West Beichen Road, Chaoyang District, Beijing.
  • the strain name is: Saccharomyces cerevisiae ; the latin name thereof is: Saccharomyces cerevisiae ; and the deposition number thereof is: CGMCC No. 14829.
  • a third object of the present invention is to provide a method for producing germacrene A.
  • the method provided by the invention includes the following steps: fermenting the above recombinant strain to obtain germacrene A.
  • a fourth object of the present invention is to provide a method for producing ⁇ -elemene.
  • the method provided by the invention includes the following steps:
  • the fermentation relates to: firstly culturing the recombinant strain in a seed medium to obtain a seed liquid; then inoculating the seed liquid into a fermentation medium for fermentation culture, and recording a product of the fermentation culture as a fermentation system.
  • a fed-batch medium is added into the fermentation system; preferably, when the dissolved oxygen value in the fermentation system is greater than 60%, a fed-batch medium is added into the fermentation system until glucose concentration of the fermentation system reaches 5 g/L.
  • a formulation of the seed medium and the fermentation medium contains per L volume: 25 g of glucose, 15 g of ammonium sulfate, 6.15 g of magnesium sulfate heptahydrate, 0.72 g of zinc sulfate heptahydrate, 8 g of potassium dihydrogen phosphate, 2 mL of calcium chloride mother liquid, 10 mL of trace metal salt mother liquid; 12 mL of vitamin mother liquid, 1 g of tryptophan; and the balance of water.
  • the calcium chloride mother liquid is 19.2 g/L aqueous solution of calcium chloride dihydrate.
  • a formulation of the trace metal salt mother liquid contains per L volume: 19.1 g of disodium ethylenediamine tetraacetate; 10.2 g of zinc sulfate heptahydrate; 0.5 g of manganese chloride tetrahydrate; 0.86 g of cobalt chloride hexahydrate; 0.78 g of copper sulfate pentahydrate; 0.56 g of sodium molybdate dihydrate; 5.12 g of iron sulphite heptahydrate; and the balance of water.
  • the formulation of the vitamin mother liquid contains per L volume: 0.05 g of biotin; 0.2 g of sodium p-aminobenzoate; 1 g of niacin; 1 g of calcium pantothenate; 1 g pyridoxine hydrochloride; 1 g of thiamine hydrochloride; 25 g of inositol; and the balance of water.
  • the formulation of the fed-batch medium contains per L volume: 800 g of glucose, 5.125 g of magnesium sulfate heptahydrate, 3.5 g of potassium sulfate, 0.28 g of sodium sulfate, 9 g of potassium dihydrogen phosphate and 1 g of tryptophan; and the balance of water.
  • the solid or liquid selective medium is a SD-Ura-His-Leu medium.
  • the culture conditions in the above step b) are 30° C., 250 rpm; the inoculation step involves a flame loop inoculation.
  • the method for culturing the seed liquid is that: after the recombinant strain is activated, a monoclonal colony on the plate is picked up and inoculated into a test tube containing SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. overnight; 500 ⁇ L of strain culture is pipetted into a 250 mL trigonal flask containing 50 mL of SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. for 24 h; 2 mL of strain culture is respectively pipetted into three 1 L trigonal flasks containing 100 mL of seed medium, shaken at 250 rpm and cultured at 30° C. for 48 h.
  • the organic solvent is n-dodecane; the heating condition is: heating at 100-380° C. for 1 hour.
  • FIG. 1 shows the germacrene A biosynthetic pathway.
  • FIG. 2 is a GC-MS test chromatomap.
  • FIG. 1 shows the germacrene A biosynthetic pathway.
  • Genomic DNA of yeast NK2-SQ (China Journal of Chinese Materia Medica, Lin Tingting, Wang Dong, Dai Zhubo, Zhang Xueli, Huang Luqi, 2016, 41(6): 1008-1015) was extracted as a template, and was amplified by using the primers required in the gene amplification in Table 1 to obtain ADH2, ALD6, ASC1 gene fragments with the expected size, promoter MF1, TEF1 and terminator CYCL.
  • PCR amplification kit TAKARA PrimeSTAR®HS DNApolymerase was used to formulate an amplification system (TAKARA).
  • the amplification system included: 5 ⁇ PS Buffer 10 ⁇ L, dNTPMix 4 ⁇ L, primers 1 ⁇ L for each, genomic DNA template 1 ⁇ L, PrimeSTAR®HS polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 minutes (1 cycle); denaturation at 98° C. for 10 sec, annealing at 55° C. for 15 sec, extension at 72° C. for 2.5 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • Nanjing GenScript Biotechnology Co., Ltd. designed full-length primers according to the sequences of SynSmFPS (SEQ ID NO: 2, derived from Salvia miltiorrhiza ) and STpGMAS (SEQ ID NO: 3, derived from Tanacetum parthenium ) genes, and the template DNA was formed by using OVERLAP method.
  • the double-stranded DNAs of SynSmFPS (SEQ ID NO: 2) and STpGMAS (SEQ ID NO: 3) were obtained by PCR amplification method, and then the PCR products were transformed and cloned into a cloning vector pUC57 (Nanjing GenScript Biotechnology Co., Ltd.), and cloning plasmids of pUC57-SynSmFPS and pUC57-STpGMAS containing SynSmFPS gene and STpGMAS gene were constructed, respectively.
  • RNA thereof was extracted by CTAB method (Cetyltrimethylammonium Bromide method): 1 ml of 2*CTAB extract (2% CTAB, 100 mM of Tris-HCl PH 8.0, 20 mM of EDTA solution (ethylenediamine tetraacetic acid), and 1.4M NaCl solution) was added into a 1.5 ml centrifuge tube. After being pre-heated at 65° C., 20 ⁇ L of 2-mercaptoethanol was added, and a small amount of lettuce leaf powder (about 50 mg) was added thereto, and then they were mixed well and kept at 65° C.
  • CTAB method Certyltrimethylammonium Bromide method
  • First-strand reverse transcription-PCR a RNase-free PCR tube was taken, and the system was formulated according to a first strand reverse transcription kit (TaKaRa Biotechnology (Dalian) Co., Ltd.): Radom 6 Mers 2 ⁇ L, dNTP 1 ⁇ L, total RNA 1 ⁇ L (200 ng), H 2 O 6 ⁇ L, Total 10 ⁇ L; a transient centrifugation was performed; PCR was carried out at 65° C.
  • a first strand reverse transcription kit (TaKaRa Biotechnology (Dalian) Co., Ltd.): Radom 6 Mers 2 ⁇ L, dNTP 1 ⁇ L, total RNA 1 ⁇ L (200 ng), H 2 O 6 ⁇ L, Total 10 ⁇ L; a transient centrifugation was performed; PCR was carried out at 65° C.
  • NK2-SQ genomic DNA and lettuce cDNA were used as templates, respectively, and amplified by using the primers in Table 2 to obtain about 1068 bp of ERG20-GGGS (SEQ ID NO: 15) (the one of positions 13-1686 in SEQ ID NO: 11 was ERG20) and 1688 bp of GGGS (SEQ ID NO: 15)-LsLTC2 (the one of positions 1-1056 in SEQ. ID NO. 12 was LsLTC2).
  • the system was formulated according to the PCR amplification kit Phusion High-Fidelity PCR Master Mix with HF Buffer (purchased from NEB (Beijing) Co., Ltd.).
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • Amplification conditions pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for imin 30 cycles); and extension at 72° C. for 10 min 1 cycle).
  • Preparation of target genes” and plasmid pM2-tHMG1 were double enzyme digested by using SexA1 (purchased from NEB (Beijing) Co., Ltd.) and Asc1 (purchased from NEB (Beijing) Co., Ltd.) to obtain 1052 bp of ADH2 enzyme-digested product and 4738 bp of enzyme-digested plasmid pM2-tHMG1 backbone; the ADH2 enzyme-digested product was then ligated with the enzyme-digested plasmid pM2-tHMG1 backbone to obtain the recombinant plasmid pM2-ADH2.
  • ACS1 obtained through amplification in the above “1.
  • Preparation of target genes” and plasmid pM4-AtCPR1 (described in Chinese patent ZL201310399947.X) were double enzyme digested by using SexA1 and Asc1 to obtain 2201 bp of ACS1 enzyme-digested product and 5061 bp of enzyme-digested plasmid pM4-AtCPR1 backbone; the ACS1 enzyme-digested product was then ligated with the enzyme-digested plasmid pM4-AtCPR1 backbone to obtain the recombinant plasmid pM4-ACS1.
  • Preparation of target genes” and plasmid pM3-ERG9 (described in Chinese patent ZL201310399947.X) were double enzyme digested by using SexA1 and Asc1 to obtain 1511 bp of ALD6 enzyme-digested product and 4598 bp of enzyme-digested plasmid pM3-ERG9 backbone; the ALD6 enzyme-digested product was then ligated with the enzyme-digested plasmid pM3-ERG9 backbone to obtain the recombinant plasmid pM3-ALD6.
  • TEF1 obtained through amplification in the above “1.
  • Preparation of target genes was enzyme digested by using SexA1, and 440 bp of TEF1 enzyme-digested product was obtained;
  • CYC1 obtained through amplification in the above “1.
  • Preparation of target genes was enzyme digested by using Asc1, and 322 bp of CYC1 enzyme-digested product was obtained;
  • pUC57-STpGMAS was enzyme digested by using SexA1 and Asc1, and 1694 bp of STpGMAS was recovered.
  • each of the enzyme-digested products TEF1, CYC1 and STpGMAS was added into a ligation system including: 2 ⁇ L of 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB), 1 ⁇ L of T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), distilled water supplemented to 20 ⁇ L; they reacted at room temperature for 2 hours to obtain a ligation product.
  • a ligation system including: 2 ⁇ L of 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB), 1 ⁇ L of T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), distilled water supplemented to 20 ⁇ L; they reacted at room temperature for 2 hours to obtain a ligation product.
  • the amplification product was purified, and then enzyme digested by using SacII.
  • SacII The target fragment SacII-TEF1-STpGMAS-CYC1-Sac was recovered from gel, and prepared to use.
  • Plasmids pRS313 (Sikorski, R. S. and Hieter, P. 1989, Genetics 122 (1): 19-27) and pRS425 (Sikorski, R. S. and Hieter, P. 1989, Genetics 122 (1): 19-27) were enzyme digested with SacII, respectively, and 4967 bp of pRS313 vector fragment and 6849 bp of pRS425 vector fragment were obtained; 4 ⁇ L of NEB buffer and 1 ⁇ L of CIP dephosphorylation enzyme (NEB) were then added, and distilled water was supplemented to 40 ⁇ L; it was treated at 37° C.
  • NEB CIP dephosphorylation enzyme
  • ligation system including: 2 ⁇ L 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB)), 1 ⁇ L T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), distilled water supplemented to 20 ⁇ L; they reacted at room temperature for 2 hours to obtain the ligation product, which was transferred into Trans10 competent cells and verified by sequencing, and thus plasmids pRS313-HIS3-P TEF1 -STpGMAS-T CYC1 and pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 were obtained.
  • plasmid pRS313-HIS3-P TEF1 -STpGMAS-T CYC1 as a template, 6692 bp of plasmid pRS313-TEF1-STpGMAS-CYC1 backbone was amplified by using the primers in Table 3.
  • LEU2 (1808 bp) was amplified by using the primers in Table 3.
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 4 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • the target fragment was purified from gel.
  • Primer sequence fragment name ⁇ 5′ ⁇ 3′ ⁇ TEF1-STpGMAS- Sac11-TEF1 GCGCCGCGGAGTGATCC CYC1 CCCACACACCATAGCTT (SEQ ID NO: 28) CYC1-Sac11 GCGCCGCGGGCGCGTTG GCCGATTCATTAATGCA (SEQ ID NO: 33) pRS313-TEF1- V313-to-R CTTTGCCTTCGTTTATC STpGMAS- TTGC CYC1 (SEQ ID NO: 38) V313-to-F TATATGTATACCTA TGAATGTCAG (SEQ ID NO: 39) LEU2 Bsp-Leu-F TGGcgTCCGGATTAAGC AAGGATTTTCTTAACTT CTTC (SEQ ID NO: 40) Bsp-Leu-R TGGcgTCCGGAGATGC GGTATTTTCTCCTTAC GCA (SEQ ID NO: 41)
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 1 min (30 cycles); extension at 72° C. for 10 min (1 cycle).
  • SynSmFPS-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-STpGMAS were used together as templates, and 2767 bp of SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS fragment was obtained by amplification using the primers in Table 4 (SexA1-SynSmFPS and STpGMAS-Asc1).
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA templates SynSmFPS-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-STpGMAS 20 ng for each, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); extension at 72° C. for 10 min (1 cycle).
  • the amplification product was purified, and then enzyme digested with SexA1 and Asc1, and the target fragment SexA1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-Asc1 (2760 bp) was recovered from gel, and prepared to use.
  • the plasmid pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 constructed in the above item “(4)” was enzyme digested with SexA1 and Asc1, and the 7602 bp large fragment was recovered from gel, so as to obtain the vector pRS425-LEU2-P TEF1 - . . . -T CYC1 ; 50 ng of each of the vectors pRS425-LEU2-P TEF1 - . . .
  • MF1 obtained in the above “1.
  • Preparation of target genes” and plasmid pRS425-LEU2-P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 constructed in the above item “(5)” were double enzyme digested by using BamHI (purchased from TaKaRa) and SexA1, respectively. 814 bp target promoter gene MF1 and 9898 bp vector fragment pRS425-LEU2- . . .
  • -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 were purified from gel and the two (50 ng for each) were added into a ligation system including: 2 ⁇ L 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB), 1 ⁇ L T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), and distilled water supplemented to 20 ⁇ L; they reacted at room temperature for 2 hours to obtain the ligation product which was transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing.
  • the plasmid obtained accordant with the correct sequence was named as pRS425-LEU2-P MF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 .
  • ERG20-GGGS SEQ ID NO: 15
  • GGGS SEQ ID NO: 15
  • LsLTC2-Asc1 primers
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA templates ERG20-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-LsLTC2 20 ng for each, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C.
  • the amplification product was purified, and then enzyme digested with SexA1 and Asc1, and the target fragment SexA1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-Asc1 (about 2744 bp) was recovered from gel, and then ligated with the enzyme-digested plasmid vector pM2-tHMG1 backbone, so as to obtain the recombinant plasmid pM2-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2.
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 1 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • the amplification product NDT80 was cloned into pEASY-Blunt Simple cloning vector (pEASY cloning vector, Beijing TransGen Biotech Co., Ltd.), transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing, and thus plasmid pEASY-NDT80 was obtained.
  • pEASY-Blunt Simple cloning vector pEASY cloning vector, Beijing TransGen Biotech Co., Ltd.
  • pEASY-NDT80 was enzyme digested by using PmeI (purchased from NEB (Beijing) Co., Ltd.), and 5122 bp target fragment (30 ng) was purified from gel, 4 ⁇ L NEB buffer (reaction buffer, purchased from NEB (Beijing) Co., Ltd.) and 1 ⁇ L CIP dephosphorylation enzyme (NEB) were added, and distilled water was supplemented to 40 ⁇ L; it was treated at 37° C. for 1 h, to which EDTA at a final concentration of 10 ⁇ mol was added, and it was kept at 65° C. for 30 min to terminate the reaction. 5122 bp target fragment pEASY-NDT80 was recovered from gel, and prepared to use.
  • HIS3 (30 ng) was purified from gel, 4 ⁇ L of 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB) and 1 ⁇ L of T4 Polynucleotide kinase (NEB) were added, and distilled water was supplemented to 40 ⁇ L, and it was phosphorylated at 37° C. for 1 h. After being recovered from gel, it was ligated with pEASY-NDT80 by using T4 DNA ligase (NEB), transformed into Trans10 competent cells, and verified by sequencing to obtain plasmid pEASY-NDT80-HIS3.
  • NEB 10 ⁇ T4 DNA Ligase Reaction Buffer
  • NEB T4 Polynucleotide kinase
  • Plasmid Information Plasmid name Basic information pM2-ADH2 Containing P PGK1 -ADH2-T ADH1 cassette pM4-ACS1 Containing P TDH3 -ACS1-T TPI1 cassette pM3-ALD6 Containing P TEF1 -ALD6-T CYC1 cassette pRS313-LEU2-P TEF1 -STpGMAS-T CYC1 Containing P TEF1 -SynSmFPS-T CYC1 cassette, LEU2, low-copy plasmid pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 Containing P TEF1 -SynSmFPS-T CYC1 cassette, LEU2, high-copy plasmid pRS425-LEU2-P TEF1 -SynSmFPS-GGGS Containing P TEF1 -SynSmFPS-GGGS
  • rDNA SEQ ID NO: 9
  • TRP1 SEQ ID NO: 10
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.51 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for Imin (30 cycles); and extension at 72° C.
  • amplification product rDNA was cloned into pEASY-Blunt Simple cloning vector and transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing, so as to obtain plasmid pEASY-rDNA.
  • pEASY-rDNA was enzyme digested by using PmeI, and 5122 bp target fragment (30 ng) was purified from gel, 4 ⁇ L NEB buffer and 1 ⁇ L CIP dephosphorylation enzyme (NEB) was added, and distilled water supplemented to a total volume of 40 ⁇ L; it was treated at 37° C. for 1 h, to which EDTA at a final concentration of 10 ⁇ mol was added, and it was kept at 65° C. for 30 min to terminate the reaction. 5122 bp target fragment pEASY-rDNA was recovered from gel, and prepared to use.
  • NEB CIP dephosphorylation enzyme
  • TRP1 (30 ng) was purified from gel, 4 ⁇ L of 10 ⁇ T4 DNA Ligase Reaction Buffer (NEB) and 1 ⁇ L of T4 Polynucleotide kinase (NEB) were added, and distilled water was supplemented to a total volume of 40 ⁇ L, and it was phosphorylated at 37° C. for 1 h. After being recovered from gel, it was ligated with pEASY-rDNA by using T4 DNA ligase (NEB), transformed into Trans10 competent cells, and verified by sequencing, and thus plasmid pEASY-rDNA-TRP1 was obtained.
  • NEB 10 ⁇ T4 DNA Ligase Reaction Buffer
  • NEB T4 Polynucleotide kinase
  • the original strains were respectively cultured in the corresponding medium (Table 13) at 30° C., 250 rpm overnight.
  • 1 mL of the culture suspension (with OD around 0.6-10) was added into a 1.5 mL EP tube, centrifuged at 10,000 g for imin under 4° C.; the resulted supernatant was discarded, the precipitate was washed with sterile water (4° C.) and centrifuged under the same conditions; and the resulted supernatant was discarded.
  • a treatment solution (10 mM LiAc (lithium acetate); 10 mM DTT (dithiothreitol); 0.6M sorbitol; 10 mM Tris-HCl (tris(hydroxymethyl)aminomethane hydrochloride buffer, pH7.5), DTT was added immediately before using the treatment solution) was added into the yeast, and it was kept at 25° C. for 20 min.
  • a treatment solution 10 mM LiAc (lithium acetate); 10 mM DTT (dithiothreitol); 0.6M sorbitol; 10 mM Tris-HCl (tris(hydroxymethyl)aminomethane hydrochloride buffer, pH7.5), DTT was added immediately before using the treatment solution) was added into the yeast, and it was kept at 25° C. for 20 min.
  • P PGK1 -ADH2-T ADH1 , P TDH3 -ACS1-T TPI1 , and P TEF1 -ALD6-T CYC1 were expression cassettes carrying alcohol dehydrogenase 2, acetyl-CoA synthetase 1, and acetaldehyde dehydrogenase 6, respectively; NDT80-HIS3-up and NDT80-HIS3-down were the upstream and downstream homology arms of HIS3, respectively; the fragments were respectively amplified according to the following methods:
  • the functional modules were obtained by PCR using the templates and primers of PCR described in Table 9, respectively: 698 bp M1 (NDT80-HIS3-up), 2081 bp M2 (P PGK1 -ADH2-T ADH1 ), 3519 bp M3 (P TDH3 -ACS1-T TPI1 ), 2376 bp M4 (P TEF1 -ALD6-T CYC1 ), 1835 bp M5 (NDT80-HIS3-down).
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); extension at 72° C. for 10 min (1 Cycle).
  • the product was recovered from gel and stored.
  • the ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-Trp-His (Beijing FunGenome Technology Co., Ltd.), 2% glucose, and 0.01% Trp.
  • the true positive clone was identified by PCR, and named as strain FPP-001.
  • the ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-Trp-His (Beijing FunGenome Technology Co., Ltd.), 2% glucose, and 0.01% Trp.
  • the true positive clone was identified by PCR, and named as strains ELE-001 (into which plasmid pRS313-LEU2-P TEF1 -STpGMAS-T CYC1 was transferred) and ELE-002 (into which plasmid pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 was transferred), respectively.
  • FPP-001 competent cells were prepared according to the steps in the above item 3. Then, plasmid pRS425-LEU2-P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 was added thereto, mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and spread onto a SD-Ura-His-Leu medium and cultured at 30° C. for 36 h or more. The true positive clone was identified by PCR, and named as strain ELE-011.
  • PCR amplification was performed by using the primers of Table 11 to obtain the amplification products corresponding to different primers. Then, the amplification products corresponding to different primers were respectively transferred into yeast FPP-001 for carrying out its own homologous recombination, and recombinant strains ELE-012 to ELE-018 were obtained, respectively.
  • linker peptide GGGS (SEQ ID NO: 15) of the fusion protein SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS in the vector were replaced with 3A001, 4A001, 5A002, 6A005, 6B004, 8A005, 12A003, respectively (as shown in Table 10).
  • PCR amplification was performed by using the primers with the linker peptide of 8A005 in Table 10 (Table 11) to obtain the amplification products corresponding to different primers. Then, the amplification products corresponding to the different primers were respectively transferred into yeast FPP-001 for carrying out its own homologous recombination, and recombinant strain ELE-019 was obtained.
  • the linker peptide GGGS (SEQ ID NO: 15) of the fusion protein SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS in the vector was replaced with 8A005.
  • Linker Nucleotide Amino acid peptide sequence sequence of name (5′ ⁇ 3′) linker peptide 3A001 TACGGTCAG YGQ 4A001 CCGGGGGGACAC PGGH (SEQ ID NO: 64) (SEQ ID NO: 16) 5A002 TATAGAAGTCAAATC YRSQI (SEQ ID NO: 65) (SEQ ID NO: 17) 6A005 GTGATACCTTTTATTTCA VIPFIS (SEQ ID NO: 66) (SEQ ID NO: 18) 6B004 TTTTTGTATCTTAAGTTT FLYLKF (SEQ ID NO: 67) (SEQ ID NO: 19) 8A005 TGGCGGTTCTCGCCGA WRFSPKLQ AGCTTCAG (SEQ ID NO: 20) (SEQ ID NO: 68) 12A003 CACCACGTGCAGGAGTCA HHVQESQCISTV CAATGTATTTCCACAG TG(SEQ ID NO: 69) (SEQ
  • the above amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (as shown in Table 11) (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 5.5 min (30 cycles); extension at 72° C. for 10 min (1 cycle).
  • the amplification product was digested by using DpnI enzyme from Fermentas Company after being purified.
  • the system thereof included: 5 ⁇ Fast Digest Green Buffer 4 ⁇ L, purified product 34 ⁇ L, DpnI 2 ⁇ L.
  • the enzyme digestion temperature and reaction time were 37° C. and 1 h, respectively. Finally, it was recovered from gel and stored.
  • FPP-001 competent cells were prepared according to the steps in above item 3. Then, the products recovered from gel obtained in the previous step were respectively added thereto, mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and respectively spread onto SD-Ura-His-Leu medium and cultured at 30° C. for 36 h or more. The true positive clone was identified by PCR, and named as strains ELE-012 to ELE-019, respectively.
  • P PGK1 -ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-T ADH1 and P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 were expression cassette carrying a fusion protein of yeast farnesyl pyrophosphate synthase and lettuce-derived germacrene A synthetase, and a fusion protein of codon-optimized Salvia miltiorrhiza -derived farnesyl pyrophosphate synthase and codon-optimized Tanacetum parthenium -derived germacrene A synthetase, respectively; and rDNA-TRP1-up and rDNA-TRP1-down were the upstream and downstream homologous arms of rDNA, respectively; the fragments were amplified according to the following methods: The functional modules were obtained by PCR using templates and primers described in Table 12, respectively:
  • M1 (rDNA-TRP1-up) ⁇ M2 (P PGK1 -ERG20-GGGS (SEQ ID NO: 15)- LsLTC2-T ADH1 ) ⁇ M3 (P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 ) ⁇ M4 (rDNA-TRP1-down).
  • the amplification system included: 5 ⁇ Phusion HF Buffer 10 ⁇ L, dNTP (10 mM each dNTP) 1 ⁇ L, DNA template 20 ng, primers (10 ⁇ M) 1.5 ⁇ L for each, Phusion High-Fidelity DNA Polymerase (2.5 U/ ⁇ L) 0.5 ⁇ L, and distilled water supplemented to a total volume of 50 ⁇ L.
  • the amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • the product was recovered from gel and stored.
  • the ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-His-Leu-Trp (Beijing FunGenome Technology Co., Ltd.), 2% glucose.
  • the true positive clone was identified by PCR, and named as strain ELE-020.
  • This ELE-020 recombinant strain was deposited on Oct. 20, 2017 at the China General Microbiological Culture Collection Center, CGMCC.
  • the deposition address was Building 3, No. 1 West Beichen Road, Chaoyang District, Beijing.
  • the strain name was: Saccharomyces cerevisiae
  • the latin name thereof is: Saccharomyces cerevisiae
  • the deposition number thereof was: CGMCC No. 14829.
  • PK2-1D (MATaura3-52; trp1-289; leu2-3, 112; his3 ⁇ 1; MAL2-8C; SUC2) FPP-001 P PGK1 -ADH2-T ADH1 , P TEF1 -ALD6-T CYC1 , P TDH3 -ACS1- SD-Ura-His T TPL1 and the screening marker of HIS3 were integrated into NDT80 site of the chromosome of strain NK2-SQ ELE-001 FPP-001 transferred with pRS313-LEU2-P TEF1 -STpGMAS-T CYC1 SD-Ura-His-Leu ELE-002 FPP-001 transferred with pRS425-LEU2-P TEF1 -STpGMAS-T CYC1 SD-Ura-His-Leu ELE-011 FPP-001 transferred with pRS425-LEU2-P TEF1 - SD-Ura-His-Leu
  • the above organic phase sample was heated in an oil bath at 100-380° C. (180° C.) within a fuming cupboard for 1 h to obtain a converted material.
  • FIG. 2 is a GC-MS test chromatomap of 3-elemene produced by all engineering yeast strains prepared in Example 2.
  • Engineering strain ELE-011 was obtained by introducing high copy number of fusion protein gene SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS based on FPP-001, and the yield of ⁇ -elemene reached 101.1 mg/L.
  • Engineering strains ELE-012 to ELE-019 (the promoters and linkers thereof were TEF1 and 3A001, TEF1 and 4A001, TEF1 and 5A002, TEF1 and 6A005, TEF1 and 6B004, TEF1 and 8A005, TEF1 and 12A003, MF1 and 8A005, respectively) were obtained by introducing high copy number of fusion protein gene SynSmFPS-Linker-STpGMAS based on FPP-001.
  • Engineering strain ELE-020 was obtained by the recombination and introduction of fusion protein genes P PGK1 -ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-T ADH1 and P TEF1 -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-T CYC1 based on ELE-019.
  • the yields of ⁇ -elemene produced by using strains ELE-012 to ELE-020 were 2.2 mg/L (relative to the culture solution), 35.5 mg/L, 110.4 mg/L, 108.6 mg/L, 73.6 mg/L, 109.7 mg/L, 48.3 mg/L, 158.1 mg/L and 469 mg/L, respectively.
  • the calcium chloride mother liquid 19.2 g/L aqueous solution of calcium chloride dihydrate.
  • the trace metal salt mother liquid 19.1 g/L of disodium ethylenediamine tetraacetate, 10.2 g/L of zinc sulfate heptahydrate, 0.5 g/L of manganese chloride tetrahydrate, 0.86 g/L of cobalt chloride hexahydrate, 0.78 g/L of copper sulfate pentahydrate, 0.56 g/L of sodium molybdate dehydrate, and 5.12 g/L of iron sulphite heptahydrate.
  • the vitamin mother liquid 0.05 g/L of biotin, 0.2 g/L of sodium p-aminobenzoate, 1 g/L of niacin, 1 g/L of calcium pantothenate, 1 g/L pyridoxine hydrochloride, 1 g/L of thiamine hydrochloride, and 25 g/L of inositol.
  • the seed medium and the fermentation medium 25 g/L of glucose, 15 g/L of ammonium sulfate, 6.15 g/L of magnesium sulfate heptahydrate, 0.72 g/L of zinc sulfate heptahydrate, 8 g/L of potassium dihydrogen phosphate, 2 mL/L of calcium chloride mother liquid, 10 mL/L of trace metal salt mother liquid; 12 mL/L of vitamin mother liquid, 1 g/L of tryptophan, and the balance of water.
  • the fed-batch medium 800 g/L of glucose, 5.125 g/L of magnesium sulfate heptahydrate, 3.5 g/L of potassium sulfate, 0.28 g/L of sodium sulfate, 9 g/L of potassium dihydrogen phosphate, 1 g/L of tryptophan, and the balance of water.
  • the engineering strain ELE-019 was activated according to the methods in item 1.
  • the monoclonal colony on the plate was picked up and inoculated into a test tube containing SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. overnight; 500 ⁇ L of the strain culture was pipetted into a 250 mL trigonal flask containing 50 mL of SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. for 24 h.
  • the parameters set in the fermentation process were: temperature 30° C., pH 5.0, dissolved oxygen 30%, air flow rate 3-20 L/min, stirring speed 300-1000 rpm; and dissolved oxygen were cascading with stirring speed and air flowing.
  • the fed-batch medium was added into the fermentation tank until the glucose concentration in the fermentation liquid was 5 g/L.
  • the experiments of the present invention verified that a recombinant strain can be obtained by expressing germacrene A synthetase gene or fusion protein gene thereof in a host yeast in the present invention, which can greatly improve the yield of germacrene A. It is suitable for industrial production of ⁇ -elemene and/or germacrene A, and provides a potent strain and research basis for the biosynthesis of anti-cancer raw material ⁇ -elemene.

Abstract

Provided is a recombinant yeast expressing germacrene A synthetase or a fusion protein thereof, wherein the fusion protein is germacrene A synthetase and farnesyl pyrophosphate synthase. The recombinant yeast improves the yield of germacrene A, and is suitable for the industrialized production of β-elemene and/or germacrene A.

Description

    CROSS REFERENCE TO RELATED APPLICATIONS
  • This application is a continuation of U.S. application Ser. No. 16/347,552, filed May 3, 2019, as a 371 of PCT International Application Number PCT/CN2017/109029, filed on Nov. 2, 2017, designating the United States of America and published in the Chinese language, which is an International Application of and claims the benefit of priority to Chinese Patent Application No. 201610961269.5, filed on Nov. 4, 2016. The disclosures of the above-referenced applications are hereby expressly incorporated by reference in their entireties.
  • REFERENCE TO SEQUENCE LISTING
  • A Sequence Listing submitted as an ASCII text file via EFS-Web is hereby incorporated by reference in accordance with 35 U.S.C. § 1.52(e). The name of the ASCII text file for the Sequence Listing is 19NWT0002-Sequence Listing-Updated.txt, the date of creation of the ASCII text file is Sep. 15, 2021, and the size of the ASCII text file is 34.9 KB.
  • FIELD OF THE INVENTION
  • The present invention relates to the field of biochemical industry, in particular to a recombinant strain, and synthesizing β-elemene according to a recombinant microbial method.
  • BACKGROUND OF THE INVENTION
  • β-elemene (beta-elemene) is a volatile sesquiterpene compound with tulip flavor, which is an active pharmaceutical ingredient (API) for first class new cancer drugs of China. At present, it is mainly separated and extracted from plants such as Curcuma aromatica and Curcuma zedoary, but this method has many disadvantages, including low content of β-elemene and large difference among plants, difficulty in product purification, long plant growth cycle, and serious damage to biological resources, especially wild resources.
  • By utilizing the principles of synthetic biology, designing and modifying microbial strains to produce natural products has been internationally recognized as one of the most promising methods, for example, the yield of taxadiene, the precursor of paclitaxel, in E. coli has reached 1000 mg/L (Parayil KuMaran AjikuMar et al., 2010, Science, 330: 70-74); levopimaradiene, the precursor of ginkgolides, has reached a yield of 700 mg/L in the engineered E. coli(Effendi Leonard et al., 2010, PNAS, 107(31): 13654-13659); the yield of artemisinic acid, the precursor of artemisinin in engineered yeast is up to 25 g/L (Paddon C J et al., 2013, Nature, 496 (7446): 528-531); and currently there are related studies on the biosynthesis of drug molecules such as artemisinin, paclitaxel and tanshinone in China.
  • In nature, farnesyl pyrophosphate (FPP) can be catalyzed by germacrene A synthetase (GMAS) to synthesize germacrene A. Germacrene A is thermally unstable and prone to intramolecular thermal rearrangement to give β-elemene. At present, some studies have been carried out on the production of germacrene A, the precursor of β-elemene, by using recombinant strains, but the yields are low and cannot meet the requirements of industrial applications. For example, Gao Yunyun et al. constructed a biosynthetic pathway of germacrene A in E. coli, and the highest yield of germacrene A synthesized by the resulted recombinant strain was only 6.32 mg/L, which is still far from industrialization (Studies on the microbial biosynthesis of the precursor of β-elemene-germacrene A, Gao Yunyun, 2012, Hangzhou Normal University).
  • SUMMARY OF THE INVENTION
  • An object of the present invention is to provide a recombinant strain.
  • The recombinant strain provided herein is a yeast comprising or expressing germacrene A synthetase or a fusion protein of germacrene A synthetase in vivo.
  • The fusion protein of germacrene A synthetase comprises the germacrene A synthetase and farnesyl pyrophosphate synthase.
  • The above recombinant strains are classified into one or more kinds depending on the host source of gene for the fusion protein, and a nucleic acid encoding the fusion protein comprises a nucleic acid encoding the germacrene A synthetase and a nucleic acid encoding the farnesyl pyrophosphate synthase.
  • The fusion protein has one or more encoding nucleic acids.
  • Among the plurality of nucleic acids encoding the fusion protein, at least two nucleic acids encoding the germacrene A synthetase are derived from different hosts, and at least two nucleic acids encoding the farnesyl pyrophosphate synthase are derived from different hosts.
  • The difference of hosts from which the gene is derived in the present invention means that the hosts from which the gene is originally derived are different. The gene for germacrene A synthetase of the present invention can be obtained by cloning from a plant or microorganism known to contain germacrene A synthetase, for example, it can be selected from Helianthus annuus L., Tanacetum parthenium, lettuce (Lactuca sativa Linn.), Artemisia carvifolia, cyanobacteria, etc. The gene for farnesyl pyrophosphate synthase (farnesyl diphosphate synthase) can be obtained by cloning from a plant or microorganisms known to contain farnesyl pyrophosphate synthase, for example, it can be selected from Saliva miltiorrhiza, Yeast, Acanthopanax senticosus (Rupr. Maxim.) Harms), Eucommiaulmoides Oliv., etc.
  • The nucleic acid encoding the germacrene A synthetase comprises a nucleic acid represented by SEQ ID NO: 3 or a nucleic acid represented by positions 13-1686 of SEQ ID NO: 12.
  • The nucleic acid encoding the farnesyl pyrophosphate synthase comprises a nucleic acid represented by SEQ ID NO: 2 or a nucleic acid represented by positions 1-1056 of SEQ ID NO: 11.
  • In the recombinant strain, the fusion protein further comprises a linker peptide for linking the germacrene A synthetase with the farnesyl pyrophosphate synthase.
  • The linker peptide is selected from GGGS (SEQ ID NO: 15), YGQ (3A001), PGGH (4A001) (SEQ ID NO: 16), YRSQI (5A002) (SEQ ID NO: 17), VIPFIS (6A005) (SEQ ID NO: 18), FLYLKF (6B004) (SEQ ID NO: 19), WRFSPKLQ (8A005) (SEQ ID NO: 20) or HHVQESQCISTV (12A003) (SEQ ID NO: 21).
  • In the above recombinant strain, comprising or expressing germacrene A synthetase or a fusion protein of germacrene A synthetase in vivo is introducing a nucleic acid encoding the germacrene A synthetase or a nucleic acid encoding the fusion protein into yeast;
  • And/or, introducing the nucleic acid encoding the germacrene A synthetase into the yeast is introducing an expression cassette comprising the nucleic acid encoding the germacrene A synthetase into the yeast;
  • Introducing the nucleic acid encoding the fusion protein into the yeast is introducing an expression cassette comprising the nucleic acid encoding the fusion protein into the yeast;
  • And/or, the expression cassette comprises the nucleic acid encoding the germacrene A synthetase contains a promoter, a nucleic acid encoding the germacrene A synthetase, and a terminator;
  • And/or, the expression cassette comprises the nucleic acid encoding the fusion protein contains a promoter, a nucleic acid encoding the fusion protein, and a terminator;
  • Or, the promoter is selected from TEF1 or MF1 or PGK1; the terminator is CYC1 or ADH1;
  • Or, the promoter is TEF1, and the terminator is CYC1;
  • Or, the promoter is F1, and the terminator is CYC1;
  • Or, the promoter is PGK1 and the terminator is ADH1.
  • Hereinbefore, the promoter TEF1 comprises the sequence represented by SEQ ID NO: 4; the promoter MF1 comprises the sequence represented by SEQ ID NO: 1; and the terminator CYC1 comprises the sequence represented by SEQ ID NO: 5.
  • In the above recombinant strain, the recombinant strain further expresses one or more marker genes; and/or the marker gene is selected from his3 or trp1.
  • In the above recombinant strain, the expression cassette comprising the nucleic acid encoding the germacrene A synthetase is introduced into the yeast via a vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase.
  • The expression cassette comprising the nucleic acid encoding the fusion protein is introduced into the yeast via a vector expressing the expression cassette comprising the nucleic acid encoding the fusion protein.
  • In the above recombinant strain, the expression cassette of the nucleic acid encoding the germacrene A synthetase is introduced into the yeast in the form of plasmid;
  • Or, the expression cassette of the nucleic acid encoding the fusion protein is introduced into the yeast in the form of plasmid and/or being integrated into a chromosome.
  • In the examples of the invention,
  • the fusion protein is selected from at least one of the following: SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS, SynSmFPS-YGQ-STpGMAS, SynSmFPS-PGGH (SEQ ID NO: 16)-STpGMAS, SynSmFPS-YRSQI (SEQ ID NO: 17)-STpGMAS, SynSmFPS-VIPFIS (SEQ ID NO: 18)-STpGMAS, SynSmFPS-FLYLKF (SEQ ID NO: 19)-STpGMAS, SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)-STpGMAS, SynSmFPS-HHVQESQCISTV (SEQ ID NO: 21)-STpGMAS, SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)-STpGMAS, ERG20-GGGS (SEQ ID NO: 15)-LsLTC2;
  • The fusion protein is preferably SynSmFPS-8A005-STpGMAS;
  • Particularly preferred fusion proteins are three kinds of fusion proteins: SynSmFPS-WRFSPKLQ (8A005) (SEQ ID NO: 20)-STpGMAS, ERG20-GGGS (SEQ ID NO: 15)-LsLTC2, SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS;
  • The expression cassette expressing the nucleic acid encoding the fusion protein is selected from at least one of the following:
  • PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-
    STpGMAS-TCYC1,
    PTEF1-SynSmFPS-YGQ-STpGMAS-TCYC1,
    PTEF1-SynSmFPS-PGGH (SEQ ID NO: 16)-
    STpGMAS-TCYC1,
    PTEF1-SynSmFPS-YRSQI (SEQ ID NO: 17)-
    STpGMAS-TCYC1
    PTEF1-SynSmFPS-VIPFIS (SEQID NO: 18)-
    STpGMAS-TCYC1,
    PTEF1-SynSmFPS-FLYLKF (SEQ ID NO: 19)-
    STpGMAS-TCYC1,
    PTEF1-SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)
    (8A005)-STpGMAS-TCYC1,
    PTEF1-SynSmFPS-HHVQESQCISTV (SEQ ID NO: 21)-
    STpGMAS-TCYC1,
    or
    PMF1-SynSmFPS-WRFSPKLQ (SEQ ID NO: 20)
    (8A005)-STpGMAS-TCYC1,
  • The expression cassette expressing the nucleic acid encoding the fusion protein is preferably PMF1-SynSmFPS-8A005-STpGMAS-TCYC1;
  • Particularly preferred expression cassettes expressing the nucleic acid encoding the fusion protein are the following three kinds: PMF1-SynSmFPS-8A005-STpGMAS-TCYC1, PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1 and PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1.
  • The vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase is selected from the following:
  • pRS313-LEU2-PTEF1-STpGMAS-TCYC1,
    pRS425-LEU2-PTEF1-STpGMAS-TCYC1.
  • The vector expressing the expression cassette of the nucleic acid encoding the germacrene A synthetase is selected from the following:
  • pRS425-LEU2-PTEF1-SynSmFPS-GGGS
    (SEQ ID NO: 15)-STpGMAS-TCYC1,
    pRS425-LEU2-PTEF1-SynSmFPS-YGQ-
    STpGMAS-TCYC1,
    pRS425-LEU2-PTEF1-SynSmFPS-PGGH
    (SEQ ID NO: 16)-STpGMAS-TCYC1,
    pRS425-LEU2-PTEF1-SynSmFPS-YRSQI
    (SEQ ID NO: 17)-STpGMAS-TCYC1,
    pRS425 -LEU2-PTEF1PTEF1-SynSmFPS-VIPFIS
    (SEQ ID NO: 18)-STpGMAS-TCYC1,
    pRS425 -LEU2-PTEF1-SynSmFPS-FLYLKF
    (SEQ ID NO: 19)-STpGMAS-TCYC1,
    pRS425-LEU2-PTEF1-SynSmFPS-WRFSPKLQ
    (SEQ ID NO: 20)-STpGMAS-TCYC1,
    or
    pRS425-LEU2-PTEF1-SynSmFPS-HHVQESQ
    CISTV (SEQ ID NO: 21)-STpGMAS-TCYC1,
    or
    pRS425-LEU2-PMF1-SynSmFPS-WRFSPKLQ
    (SEQ ID NO: 20)-STpGMAS-TCYC1.
  • The above gene expression cassette of the fusion protein integrated into the chromosome is selected from PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 and PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1.
  • In the above recombinant strain, the yeast is a strain obtained by increasing content and/or activity of alcohol dehydrogenase, acetaldehyde dehydrogenase and acetyl-CoA synthetase in an original yeast.
  • The strain obtained by increasing the content and/or activity of alcohol dehydrogenase, acetaldehyde dehydrogenase and acetyl-CoA synthetase in the original yeast relates to increasing copy numbers of a nucleic acid encoding the alcohol dehydrogenase, a nucleic acid encoding the acetaldehyde dehydrogenase and a nucleic acid encoding the acetyl-CoA synthetase in the original yeast.
  • In the above recombinant strain, increasing copy numbers of the nucleic acid encoding the alcohol dehydrogenase, the nucleic acid encoding the acetaldehyde dehydrogenase and the nucleic acid encoding the acetyl-CoA synthetase in the original yeast is introducing an expression cassette of the nucleic acid encoding the alcohol dehydrogenase, an expression cassette of the nucleic acid encoding the acetaldehyde dehydrogenase, an expression cassette of the nucleic acid encoding the acetyl-CoA synthetase, and another said marker gene (his3) into the original yeast by homologous recombination.
  • In the above recombinant strain, the original yeast is Saccharomyces cerevisiae; and/or said Saccharomyces cerevisiae is Saccharomyces cerevisiae NK2-SQ.
  • One of the marker genes is TRP1; another of the marker genes is HIS3.
  • Gene ADH2 of the above alcohol dehydrogenase comprises the sequence represented by SEQ ID NO: 6, gene ALD6 of the acetaldehyde dehydrogenase comprises the sequence represented by SEQ ID NO: 7, and gene ACS1 of the acetyl-CoA synthetase comprises the sequence represented by SEQ ID NO: 8. Constructions of the recombinant strain and each of the required vectors and fragments of the present invention are shown in the examples.
  • In the examples of the invention, the recombinant strains are specifically as follows:
  • Recombinant strain ELE-001 is a strain obtained by introducing pRS313-LEU2-PTEF1-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-002 is a strain obtained by introducing pRS425-LEU2-PTEF1-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-011, which is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-012 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-3A001-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-013 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-4A001-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-014 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-5A002-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-015 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-6A005-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-016 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-6B004-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-017 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-8A005-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-018 is a strain obtained by introducing pRS425-LEU2-PTEF1-SynSmFPS-12A003-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-019 is a strain obtained by introducing pRS425-LEU2-PMF1-SynSmFPS-8A005-STpGMAS-TCYC1 into yeast FPP-001;
  • Recombinant strain ELE-020 is a strain obtained by introducing pRS425-LEU2-PMF1-SynSmFPS-8A005-STpGMAS-TCYC1, and then introducing PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1, PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1, rDNA-TRP1-up and rDNA-TRP1-down by homologous recombination into yeast FPP-001.
  • The above yeast FPP-001 is a strain obtained by introducing NDT80-HiS3-up, PPGK1-ADH2-TADH1, PTDH3-ACS1-TTPI1, PTEF1-ALD6-TCYC1 and NDT80-HIS3-down into Saccharomyces cerevisiae.
  • Wherein, recombinant strain ELE-020 is Saccharomyces cerevisiae CGMCC No. 14829, which also falls within the protection scope of the present invention.
  • This recombinant strain ELE-020 is deposited on Oct. 20, 2017 at the China General Microbiological Culture Collection Center, CGMCC. The deposition address is Building 3, No. 1 West Beichen Road, Chaoyang District, Beijing. The strain name is: Saccharomyces cerevisiae; the latin name thereof is: Saccharomyces cerevisiae; and the deposition number thereof is: CGMCC No. 14829.
  • The use of the above recombinant strain for the production of β-elemene and/or germacrene A also falls within the protection scope of the present invention.
  • A third object of the present invention is to provide a method for producing germacrene A.
  • The method provided by the invention includes the following steps: fermenting the above recombinant strain to obtain germacrene A.
  • A fourth object of the present invention is to provide a method for producing β-elemene.
  • The method provided by the invention includes the following steps:
  • 1) Fermenting the recombinant strain to obtain a fermentation product;
    2) Extracting the fermentation product with an organic solution, and collecting the organic phase;
    3) Heating the organic phase to obtain β-elemene.
  • In the above methods, the fermentation relates to: firstly culturing the recombinant strain in a seed medium to obtain a seed liquid; then inoculating the seed liquid into a fermentation medium for fermentation culture, and recording a product of the fermentation culture as a fermentation system.
  • In the above methods, during the fermentation culture, a fed-batch medium is added into the fermentation system; preferably, when the dissolved oxygen value in the fermentation system is greater than 60%, a fed-batch medium is added into the fermentation system until glucose concentration of the fermentation system reaches 5 g/L.
  • In the above methods, a formulation of the seed medium and the fermentation medium contains per L volume: 25 g of glucose, 15 g of ammonium sulfate, 6.15 g of magnesium sulfate heptahydrate, 0.72 g of zinc sulfate heptahydrate, 8 g of potassium dihydrogen phosphate, 2 mL of calcium chloride mother liquid, 10 mL of trace metal salt mother liquid; 12 mL of vitamin mother liquid, 1 g of tryptophan; and the balance of water.
  • The calcium chloride mother liquid is 19.2 g/L aqueous solution of calcium chloride dihydrate.
  • A formulation of the trace metal salt mother liquid contains per L volume: 19.1 g of disodium ethylenediamine tetraacetate; 10.2 g of zinc sulfate heptahydrate; 0.5 g of manganese chloride tetrahydrate; 0.86 g of cobalt chloride hexahydrate; 0.78 g of copper sulfate pentahydrate; 0.56 g of sodium molybdate dihydrate; 5.12 g of iron sulphite heptahydrate; and the balance of water.
  • The formulation of the vitamin mother liquid contains per L volume: 0.05 g of biotin; 0.2 g of sodium p-aminobenzoate; 1 g of niacin; 1 g of calcium pantothenate; 1 g pyridoxine hydrochloride; 1 g of thiamine hydrochloride; 25 g of inositol; and the balance of water.
  • The formulation of the fed-batch medium contains per L volume: 800 g of glucose, 5.125 g of magnesium sulfate heptahydrate, 3.5 g of potassium sulfate, 0.28 g of sodium sulfate, 9 g of potassium dihydrogen phosphate and 1 g of tryptophan; and the balance of water.
  • Before the fermentation, the following steps are further included:
  • a) Activating the recombinant strain in a solid selective medium;
    b) After a shaking culture in a liquid selective medium, transferring the recombinant strain into a seed medium for culturing to give a seed liquid.
  • Wherein, the solid or liquid selective medium is a SD-Ura-His-Leu medium.
  • The culture conditions in the above step b) are 30° C., 250 rpm; the inoculation step involves a flame loop inoculation.
  • Specifically, in the above fermentation method, the method for culturing the seed liquid is that: after the recombinant strain is activated, a monoclonal colony on the plate is picked up and inoculated into a test tube containing SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. overnight; 500 μL of strain culture is pipetted into a 250 mL trigonal flask containing 50 mL of SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. for 24 h; 2 mL of strain culture is respectively pipetted into three 1 L trigonal flasks containing 100 mL of seed medium, shaken at 250 rpm and cultured at 30° C. for 48 h.
  • In the above method for producing β-elemene, the organic solvent is n-dodecane; the heating condition is: heating at 100-380° C. for 1 hour.
  • BRIEF DESCRIPTION OF THE DRAWING
  • FIG. 1 shows the germacrene A biosynthetic pathway.
  • FIG. 2 is a GC-MS test chromatomap.
  • DETAILED DESCRIPTION OF THE INVENTION
  • Unless otherwise specified, the experimental methods used in the following examples are conventional methods.
  • Unless otherwise specified, the materials, reagents and the like used in the following examples are commercially available.
  • FIG. 1 shows the germacrene A biosynthetic pathway.
  • Example 1: Preparation of Target Genes and Plasmids Used
  • 1. Preparation of Target Genes
  • (1) Acquisition of ADH2, ALD6, ASC1, MF1, TEF1 and CYC1
  • Genomic DNA of yeast NK2-SQ (China Journal of Chinese Materia Medica, Lin Tingting, Wang Dong, Dai Zhubo, Zhang Xueli, Huang Luqi, 2016, 41(6): 1008-1015) was extracted as a template, and was amplified by using the primers required in the gene amplification in Table 1 to obtain ADH2, ALD6, ASC1 gene fragments with the expected size, promoter MF1, TEF1 and terminator CYCL.
  • PCR amplification kit TAKARA PrimeSTAR®HS DNApolymerase was used to formulate an amplification system (TAKARA). The amplification system included: 5×PS Buffer 10 μL, dNTPMix 4 μL, primers 1 μL for each, genomic DNA template 1 μL, PrimeSTAR®HS polymerase (2.5 U/μL) 0.5 μL, distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 minutes (1 cycle); denaturation at 98° C. for 10 sec, annealing at 55° C. for 15 sec, extension at 72° C. for 2.5 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • TABLE 1
    Primer sequences
    Gene Primer Primer sequence
    fragment name □ 5′→3′□
    ADH2 SexA1-ADH2 GCGACCWGGTATGTCTATTCCAGAA
    ACTCAAAAAGC
    (SEQ ID NO: 22)
    ADH2-Asc1 GCGGCGCGCCTTATTTAGAAGTGT
    CAACAACGTATC
    (SEQ ID NO: 23)
    ALD6 SexA1-ALD6 TCGCGACCWGGTAAAACAATGACT
    AAGCTACACTTTGAC
    (SEQ ID NO: 24)
    ALD6-Asc1 TCGCGGCGCGCCTTACAACTTA
    ATTCTGACAGCT
    (SEQ ID NO: 25)
    ACS 1 SexA1-ACS 1 TCGCGACCWGGTAAAACAATGTCGC
    CCTCTGCCGTACAATC
    (SEQ ID NO: 26)
    ACS 1-Asc 1 TCGCGGCGCGCCTTACAACTTGAC
    CGAATCAATTAG
    (SEQ ID NO: 27)
    TEF1 Sac11-TEF 1 GCGCCGCGGAGTGATCCCCCAC
    ACACCATAGCTT
    (SEQ ID NO: 28)
    TEFl-SexA1 TGGCGACCWGGTTTTGTAATTAAA
    ACTTAGATTAGA
    (SEQ ID NO: 29)
    MF1 BamH1- GCGGGATCCGGGAAGACATGCT
    pMF1 TAACAAGAAGAT
    (SEQ ID NO: 30)
    pMF1-SexA1 GCGACCTGGTTCTTTTAATCGTT
    TATATTGTGTAT
    (SEQ ID NO: 31)
    CYC1 Asc1-CYC1 GCGGCGCGCCCCGCTGATCC
    TAGAGGGCCGCATCA
    (SEQ ID NO: 32)
    CYC1-Sac 11 GCGCCGCGGGCGCGTTGGCC
    GATTCATTAATGCA
    (SEQ ID NO: 33)
  • (2) Acquisition of Farnesyl Pyrophosphate Synthase Gene SynSmFPS from Salvia miltiorrhiza and Germacrene A Synthetase Gene STpGMA from Tanacetum parthenium
  • Nanjing GenScript Biotechnology Co., Ltd. designed full-length primers according to the sequences of SynSmFPS (SEQ ID NO: 2, derived from Salvia miltiorrhiza) and STpGMAS (SEQ ID NO: 3, derived from Tanacetum parthenium) genes, and the template DNA was formed by using OVERLAP method. The double-stranded DNAs of SynSmFPS (SEQ ID NO: 2) and STpGMAS (SEQ ID NO: 3) were obtained by PCR amplification method, and then the PCR products were transformed and cloned into a cloning vector pUC57 (Nanjing GenScript Biotechnology Co., Ltd.), and cloning plasmids of pUC57-SynSmFPS and pUC57-STpGMAS containing SynSmFPS gene and STpGMAS gene were constructed, respectively.
  • (3) Acquisition of Farnesyl Pyrophosphate Synthase Gene ERG20-GGGS (SEQ ID NO: 15) from Yeast and Germacrene A Synthetase Gene GGGS (SEQ ID NO: 15)-LsLTC2 from Lettuce
  • 200 mg of lettuce leaves was taken and ground with liquid nitrogen, and then total RNA thereof was extracted by CTAB method (Cetyltrimethylammonium Bromide method): 1 ml of 2*CTAB extract (2% CTAB, 100 mM of Tris-HCl PH 8.0, 20 mM of EDTA solution (ethylenediamine tetraacetic acid), and 1.4M NaCl solution) was added into a 1.5 ml centrifuge tube. After being pre-heated at 65° C., 20 μL of 2-mercaptoethanol was added, and a small amount of lettuce leaf powder (about 50 mg) was added thereto, and then they were mixed well and kept at 65° C. for 10 min, shaken 5 times, centrifuged at 12,000 rpm for 10 min under 4° C.; the resulted supernatant was removed, extracted with an equal volume of chloroform/isoamyl alcohol, centrifuged at 12,000 rpm for 10 min under 4° C.; the obtained supernatant was removed, extracted with an equal volume of chloroform/isoamyl alcohol, centrifuged at 12,000 rpm for 10 min under 4° C.; the resulted supernatant was removed, extracted with 1/6 volume of chloroform/isoamyl alcohol, centrifuged at 15,000 rpm for 30 min under 4° C.; the obtained supernatant was removed, to which 1/4 volume of 10 mol/L LiCl was added, kept at 4° C. overnight, centrifuged at 15,000 rpm for 30 min under 4° C.; the supernatant was discarded, and the obtained precipitate was washed twice with 75% ethanol and washed once with absolute ethanol, and placed on the super-clean bench for 15 min (room temperature); it was dissolved in 20 μL of milliQ DEPC-treated water (the solvent was milliQ pure water and the solute was diethyl pyrocarbonate, and the volume ratio diethyl pyrocarbonate:water was 1:1000), to which 1/10 volume of 2 mol/L NaAC (pH 4.0) and 2 volumes of absolute ethanol were added, kept at −20° C. for 2 h, and centrifuged at 12,000 rpm for 10 min under 4° C.; the resulted supernatant was discarded, and the obtained precipitate was washed twice with 75% ethanol and washed once with absolute ethanol, placed on a super-clean bench for 15 min (room temperature), to which 15 μL of milliQ DEPC-treated water was added to fully dissolve the precipitate, and stored at −70° C.
  • First-strand reverse transcription-PCR: a RNase-free PCR tube was taken, and the system was formulated according to a first strand reverse transcription kit (TaKaRa Biotechnology (Dalian) Co., Ltd.): Radom 6 Mers 2 μL, dNTP 1 μL, total RNA 1 μL (200 ng), H2O 6 μL, Total 10 μL; a transient centrifugation was performed; PCR was carried out at 65° C. for 5 min; quenching it on ice and then adding the same into the following system for reaction (coming with the first chain reverse transcription kit): 5*primer Buffer 4 μL, RNAs Inhibiter 0.5 μL, R-Transcription 1 μL, H2O 4.5 μL; transient centrifugation was performed, and a reaction was performed in a PCR instrument: 30° C. for 10 min, 42° C. for 60 min, 70° C. for 15 min, and kept at 4° C.
  • NK2-SQ genomic DNA and lettuce cDNA were used as templates, respectively, and amplified by using the primers in Table 2 to obtain about 1068 bp of ERG20-GGGS (SEQ ID NO: 15) (the one of positions 13-1686 in SEQ ID NO: 11 was ERG20) and 1688 bp of GGGS (SEQ ID NO: 15)-LsLTC2 (the one of positions 1-1056 in SEQ. ID NO. 12 was LsLTC2).
  • The system was formulated according to the PCR amplification kit Phusion High-Fidelity PCR Master Mix with HF Buffer (purchased from NEB (Beijing) Co., Ltd.). The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. Amplification conditions: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for imin 30 cycles); and extension at 72° C. for 10 min 1 cycle).
  • TABLE 2
    Primer sequences
    Gene Primer Primer
    fragment name sequence (5′→3′)
    ERG20-GGGS SEXA1-ERG20 GCGACCWGGTAAAACAAT
    (SEQ ID GGCTTCAGAAAAAGAAATT
    NO: 15) AGGAGD
    □ SEQ ID NO: 34□
    ERG20-GGGS CTTTCCCATAGAACCACCA
    (SEQ ID CCCTATTTGCTTCTCTTGT
    NO: 15) AAACTTTG
    □ SEQ ID NO: 35□
    GGGS GGGS (SEQ ID GGTGGTGGTTCTATGGCA
    (SEQ ID NO: 15)- GCAGTTGACACTAA
    NO: 15)- LSLTC2 □ SEQ ID NO: 36□
    LSLTC2
    LSLTC2-ASC1 GCGGGCGCGCCTTACATGGA
    TACAGAACCAACAAAT
    □ SEQ ID NO: 37□
  • 2. Construction of Recombinant Plasmids
  • (1) Plasmid pM2-ADH2
  • ADH2 obtained through amplification in the above “1. Preparation of target genes” and plasmid pM2-tHMG1 (described in Chinese patent ZL201310399947.X) were double enzyme digested by using SexA1 (purchased from NEB (Beijing) Co., Ltd.) and Asc1 (purchased from NEB (Beijing) Co., Ltd.) to obtain 1052 bp of ADH2 enzyme-digested product and 4738 bp of enzyme-digested plasmid pM2-tHMG1 backbone; the ADH2 enzyme-digested product was then ligated with the enzyme-digested plasmid pM2-tHMG1 backbone to obtain the recombinant plasmid pM2-ADH2.
  • (2) Plasmid pM4-ACS1
  • ACS1 obtained through amplification in the above “1. Preparation of target genes” and plasmid pM4-AtCPR1 (described in Chinese patent ZL201310399947.X) were double enzyme digested by using SexA1 and Asc1 to obtain 2201 bp of ACS1 enzyme-digested product and 5061 bp of enzyme-digested plasmid pM4-AtCPR1 backbone; the ACS1 enzyme-digested product was then ligated with the enzyme-digested plasmid pM4-AtCPR1 backbone to obtain the recombinant plasmid pM4-ACS1.
  • (3) Plasmid pM3-ALD6
  • ALD6 obtained through amplification in the above “1. Preparation of target genes” and plasmid pM3-ERG9 (described in Chinese patent ZL201310399947.X) were double enzyme digested by using SexA1 and Asc1 to obtain 1511 bp of ALD6 enzyme-digested product and 4598 bp of enzyme-digested plasmid pM3-ERG9 backbone; the ALD6 enzyme-digested product was then ligated with the enzyme-digested plasmid pM3-ERG9 backbone to obtain the recombinant plasmid pM3-ALD6.
  • (4) Construction of Plasmids pRS313-LEU2-PTEF1-STpGMAS-TCYC1 and pRS425-LEU2-PTEF1-STpGMAS-TCYC1
  • TEF1 obtained through amplification in the above “1. Preparation of target genes” was enzyme digested by using SexA1, and 440 bp of TEF1 enzyme-digested product was obtained;
  • CYC1 obtained through amplification in the above “1. Preparation of target genes” was enzyme digested by using Asc1, and 322 bp of CYC1 enzyme-digested product was obtained;
  • pUC57-STpGMAS was enzyme digested by using SexA1 and Asc1, and 1694 bp of STpGMAS was recovered.
  • 50 ng of each of the enzyme-digested products TEF1, CYC1 and STpGMAS was added into a ligation system including: 2 μL of 10×T4 DNA Ligase Reaction Buffer (NEB), 1 μL of T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), distilled water supplemented to 20 μL; they reacted at room temperature for 2 hours to obtain a ligation product.
  • 1 μL of the ligation product was added into a PCR system (Phusion High-Fidelity PCR Master Mix with HF Buffer kit, NEB) including: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, and primers Sac11-TEF1 and CYC1-Sac11 (10 μM) in Table 3, 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 1.5 min (30 cycles); and extension at 72° C. for 10 min (1 cycle). 2456 bp of PCR amplification product was obtained.
  • The amplification product was purified, and then enzyme digested by using SacII. The target fragment SacII-TEF1-STpGMAS-CYC1-Sac was recovered from gel, and prepared to use.
  • Plasmids pRS313 (Sikorski, R. S. and Hieter, P. 1989, Genetics 122 (1): 19-27) and pRS425 (Sikorski, R. S. and Hieter, P. 1989, Genetics 122 (1): 19-27) were enzyme digested with SacII, respectively, and 4967 bp of pRS313 vector fragment and 6849 bp of pRS425 vector fragment were obtained; 4 μL of NEB buffer and 1 μL of CIP dephosphorylation enzyme (NEB) were then added, and distilled water was supplemented to 40 μL; it was treated at 37° C. for 1 h, and EDTA with the final concentration of 10 μmol was added; it was kept at 65° C. for 30 min to terminate the reaction, and pRS313-SacII vector fragment and pRS425-SacII vector fragment were recovered from gel.
  • 50 ng of each of the vector fragments pRS313-SacII, pRS425-SacII and SacII-TEF1-STpGMAS-CYC1-SacII obtained in the above step “1. Preparation of target genes” were respectively added into a ligation system including: 2 μL 10×T4 DNA Ligase Reaction Buffer (NEB)), 1 μL T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), distilled water supplemented to 20 μL; they reacted at room temperature for 2 hours to obtain the ligation product, which was transferred into Trans10 competent cells and verified by sequencing, and thus plasmids pRS313-HIS3-PTEF1-STpGMAS-TCYC1 and pRS425-LEU2-PTEF1-STpGMAS-TCYC1 were obtained.
  • Using plasmid pRS313-HIS3-PTEF1-STpGMAS-TCYC1 as a template, 6692 bp of plasmid pRS313-TEF1-STpGMAS-CYC1 backbone was amplified by using the primers in Table 3.
  • Using pRS425 as a template, LEU2 (1808 bp) was amplified by using the primers in Table 3.
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 4 min (30 cycles); and extension at 72° C. for 10 min (1 cycle). The target fragment was purified from gel. 2 μL of 10×T4 DNA Ligase Reaction Buffer (NEB) and 1 μL of T4 Polynucleotide kinase (NEB) were added into the product of LEU2 fragment, and distilled water was supplemented to a total volume of 20 μL. A phosphorylation was performed at 37° C. for 1 h, and it was ligated to pRS313-PTEF1-STpGMAS-TCYC1 by T4 DNA ligase (NEB) after being recovered from gel, transformed, and verified by sequencing to obtain plasmid pRS313-LEU2-PTEF1-STpGMAS-TCYC1.
  • TABLE 3
    Primer sequences
    Primer
    Gene Primer sequence
    fragment name □ 5′→3′□
    TEF1-STpGMAS- Sac11-TEF1 GCGCCGCGGAGTGATCC
    CYC1 CCCACACACCATAGCTT
    (SEQ ID NO: 28)
    CYC1-Sac11 GCGCCGCGGGCGCGTTG
    GCCGATTCATTAATGCA
    (SEQ ID NO: 33)
    pRS313-TEF1- V313-to-R CTTTGCCTTCGTTTATC
    STpGMAS- TTGC
    CYC1 (SEQ ID NO: 38)
    V313-to-F TATATGTATACCTA
    TGAATGTCAG
    (SEQ ID NO: 39)
    LEU2 Bsp-Leu-F TGGcgTCCGGATTAAGC
    AAGGATTTTCTTAACTT
    CTTC
    (SEQ ID NO: 40)
    Bsp-Leu-R TGGcgTCCGGAGATGC
    GGTATTTTCTCCTTAC
    GCA (SEQ ID NO: 41)
  • (5) Construction of Plasmid pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1
  • Using pUC57-SynSmFPS and pUC57-STpGMAS as templates, 1080 bp of SynSmFPS-GGGS (SEQ ID NO: 15) and 1704 bp of GGGS (SEQ ID NO: 15)-STpGMAS were obtained by amplification using the primers in Table 4.
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 1 min (30 cycles); extension at 72° C. for 10 min (1 cycle). SynSmFPS-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-STpGMAS were used together as templates, and 2767 bp of SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS fragment was obtained by amplification using the primers in Table 4 (SexA1-SynSmFPS and STpGMAS-Asc1).
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA templates SynSmFPS-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-STpGMAS 20 ng for each, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); extension at 72° C. for 10 min (1 cycle).
  • The amplification product was purified, and then enzyme digested with SexA1 and Asc1, and the target fragment SexA1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-Asc1 (2760 bp) was recovered from gel, and prepared to use.
  • The plasmid pRS425-LEU2-PTEF1-STpGMAS-TCYC1 constructed in the above item “(4)” was enzyme digested with SexA1 and Asc1, and the 7602 bp large fragment was recovered from gel, so as to obtain the vector pRS425-LEU2-PTEF1- . . . -TCYC1; 50 ng of each of the vectors pRS425-LEU2-PTEF1- . . . -TCYC1 and SexA1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-Asc1 was added into the ligation system including: 2 μL 10×T4 DNA Ligase Reaction Buffer (NEB), 1 μL T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), and distilled water supplemented to 20 μL; they reacted at room temperature for 2 hours to obtain a ligation product which was transferred into Trans10 competent cells, the plasmid was extracted and verified by sequencing, and plasmid pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 was obtained.
  • TABLE 4
    Primer sequences
    Primer
    Gene Primer sequence
    fragment name □ 5′→3′□
    SynSmFPS-GGGS SexA1- ACCTGGTAAAACAATGGC
    (SEQ ID SynSmFPS TAATTTGAATGGTGAATC
    NO: 15) (SEQ ID NO: 42)
    SynSmFPS-GGGS TGCTGCCATAGAACCACC
    SEQ ID NO: 15) ACCTTTTTGTCTTTTATAG
    ATTTTACC
    (SEQ ID NO: 43)
    GGGS GGGS GGTGGTGGTTCTATGGCA
    (SEQ ID (SEQ ID NO: 5) GCAGTACAAGCAACCAC
    NO: 15)- -STpGMAS (SEQ ID NO: 44)
    STpGMAS
    STpGMAS-Asc1 GGCGCGCCTCAGACTGG
    CAAGGAATCTA
    (SEQ ID NO: 45)
    SynSmFPS- SexA1- ACCTGGTAAAACAATGGC
    GGGS SynSmFPS TAATTTGAATGGTGAATC
    (SEQ ID (SEQ ID NO: 42)
    NO: 15)-
    STpGMAS
    STpGMAS-Asc1 GGCGCGCCTCAGACTGG
    CAAGGAATCTA
    (SEQ ID NO: 45)
  • (6) Construction of Plasmid pRS425-LEU2-PMF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1
  • MF1 obtained in the above “1. Preparation of target genes” and plasmid pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 constructed in the above item “(5)” were double enzyme digested by using BamHI (purchased from TaKaRa) and SexA1, respectively. 814 bp target promoter gene MF1 and 9898 bp vector fragment pRS425-LEU2- . . . -SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 were purified from gel and the two (50 ng for each) were added into a ligation system including: 2 μL 10×T4 DNA Ligase Reaction Buffer (NEB), 1 μL T4 DNA Ligase (NEB, 400,000 cohesive end units/ml), and distilled water supplemented to 20 μL; they reacted at room temperature for 2 hours to obtain the ligation product which was transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing. The plasmid obtained accordant with the correct sequence was named as pRS425-LEU2-PMF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1.
  • (7) Construction of Plasmid pM2-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2
  • Using ERG20-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-LsLTC2 together as templates, an ERG20-GGGS (SEQ ID NO: 15)-LsLTC2 fragment of about 2744 bp was obtained by amplification using the primers (SexA1-ERG20 and LsLTC2-Asc1) in Table 5.
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA templates ERG20-GGGS (SEQ ID NO: 15) and GGGS (SEQ ID NO: 15)-LsLTC2 20 ng for each, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); and extension at 72° C. for 10 min (1 cycle). The amplification product was purified, and then enzyme digested with SexA1 and Asc1, and the target fragment SexA1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-Asc1 (about 2744 bp) was recovered from gel, and then ligated with the enzyme-digested plasmid vector pM2-tHMG1 backbone, so as to obtain the recombinant plasmid pM2-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2.
  • TABLE 5
    Primer sequences
    Primer Primer sequence
    Gene fragment name □ 5′→3′□
    ERG20-GGGS SEXA1- GCGACCWGGTAAAACAATGGCT
    (SEQ ID ERG20 TCAGAAAAAGAAATTAGGAG
    NO: 15) (SEQ ID NO: 34)
    ERG20- CTTTCCCATAGAACCACCACCC
    GGGS TATTTGCTTCTCTTGTAAACTT
    (SEQ ID TG
    NO: 15) (SEQ ID NO: 35)
    GGGS (SEQ ID NO: GGGS GGTGGTGGTTCTATGGCAGCAG
    15)-LSLTC2 (SEQ ID TTGACACTAA
    LSLTC2 (SEQ ID NO: 36)
    NO: 15)
    LSLTC2- GCGGGCGCGCCTTACATGGATA
    ASC1 CAGAACCAACAAAT (SEQ
    ID NO: 37)
    ERG20-GGGS SEXA1- GCGACCWGGTAAAACAATGGCT
    (SEQ ID ERG20 TCAGAAAAAGAAATTAGGAG
    NO: 15)-STPGMAS (SEQ ID NO: 34)
    LSLTC2- GCGGGCGCGCCTTACATGGAT
    ASC1 ACAGAACCAACAAAT (SEQ
    ID NO: 37)
  • (8) Construction of Plasmid pEASY-NDT80-HIS3
  • Using NK2-SQ genomic DNA and pRS313 as templates, 1252 bp of NDT80 (SEQ ID NO: 13) and 1168 bp of HIS3 (SEQ ID NO: 14) were obtained by amplification using the primers in Table 6.
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 1 min (30 cycles); and extension at 72° C. for 10 min (1 cycle).
  • The amplification product NDT80 was cloned into pEASY-Blunt Simple cloning vector (pEASY cloning vector, Beijing TransGen Biotech Co., Ltd.), transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing, and thus plasmid pEASY-NDT80 was obtained.
  • TABLE 6
    Primers
    Gene Primer Primer sequence
    fragment name Template □ 5′→3′□
    NDT80 NDT80-up- Genomic GCGGTTTAAACGTTCGAC
    PmeI DNA CATATTGATGAAGAGTGGG
    TAGG(SEQ ID NO: 46)
    NDT80- NK2-SQ CTGTTCCATTGATTTCTTC
    down TCTATTGTTATATC
    (SEQ ID NO: 47)
    HIS3 Bsp-HIS-F pRS313 TGGCGTCCGGATCGCGCGT
    TTCGGTGATGACGG
    (SEQ ID NO: 48)
    Pme1-HIS-R GCGGTTTAAACGTGTCACT
    ACATAAGAACACCT
    (SEQ ID NO: 49)
  • pEASY-NDT80 was enzyme digested by using PmeI (purchased from NEB (Beijing) Co., Ltd.), and 5122 bp target fragment (30 ng) was purified from gel, 4 μL NEB buffer (reaction buffer, purchased from NEB (Beijing) Co., Ltd.) and 1 μL CIP dephosphorylation enzyme (NEB) were added, and distilled water was supplemented to 40 μL; it was treated at 37° C. for 1 h, to which EDTA at a final concentration of 10 μmol was added, and it was kept at 65° C. for 30 min to terminate the reaction. 5122 bp target fragment pEASY-NDT80 was recovered from gel, and prepared to use.
  • HIS3 (30 ng) was purified from gel, 4 μL of 10×T4 DNA Ligase Reaction Buffer (NEB) and 1 μL of T4 Polynucleotide kinase (NEB) were added, and distilled water was supplemented to 40 μL, and it was phosphorylated at 37° C. for 1 h. After being recovered from gel, it was ligated with pEASY-NDT80 by using T4 DNA ligase (NEB), transformed into Trans10 competent cells, and verified by sequencing to obtain plasmid pEASY-NDT80-HIS3.
  • The information of plasmids constructed above was shown in Table 7 below:
  • TABLE 7
    Plasmid Information
    Plasmid name Basic information
    pM2-ADH2 Containing PPGK1-ADH2-TADH1 cassette
    pM4-ACS1 Containing PTDH3-ACS1-TTPI1 cassette
    pM3-ALD6 Containing PTEF1-ALD6-TCYC1 cassette
    pRS313-LEU2-PTEF1-STpGMAS-TCYC1 Containing PTEF1-SynSmFPS-TCYC1
    cassette, LEU2, low-copy plasmid
    pRS425-LEU2-PTEF1-STpGMAS-TCYC1 Containing PTEF1-SynSmFPS-TCYC1 cassette, LEU2,
    high-copy plasmid
    pRS425-LEU2-PTEF1-SynSmFPS-GGGS Containing PTEF1-SynSmFPS-GGGS (SEQ
    (SEQ ID NO: 15)-STpGMAS-TCYC1 ID NO: 15)-STpGMAS-TCYC1 cassette, LEU2,
    high-copy plasmid
    pRS425-LEU2-PMF1-SynSmFPS-GGGS Containing PMF1-SynSmFPS-GGGS (SEQ ID
    (SEQ ID NO: 15)-STpGMAS-TCYC1 NO: 15)-STpGMAS-TCYC1 cassette, LEU2,
    high-copy plasmid
    pEASY-NDT80-HIS3 NDT80, HIS3
  • (9) Construction of Plasmid pEASY-rDNA-TRP1
  • Using NK2-SQ genomic DNA and pRS314 (Sikorski, R. S. and Hieter, P. 1989, Genetics 122(1): 19-27) as templates, respectively, rDNA (SEQ ID NO: 9) and TRP1 (SEQ ID NO: 10) were obtained by amplification using the primers in Table 8.
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.51 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for Imin (30 cycles); and extension at 72° C. for 10 min (1 cycle) The amplification product rDNA was cloned into pEASY-Blunt Simple cloning vector and transformed into Trans10 competent cells, and the plasmid was extracted and verified by sequencing, so as to obtain plasmid pEASY-rDNA.
  • TABLE 8
    Primers
    Gene Primer Primer sequence
    fragment name Template □ 5′→3′□
    rDNA rDNA-up-F Genomic ATGAGAGTAGCAAACGT
    DNA of AAGTCT
    NK2-SQ (SEQ ID NO: 50)
    rDNA-R-PmeI GCGGTTTAAACTTTCCT
    CTAATCAGGTTCCACCA
    (SEQ ID NO: 51)
    TRP1 BSP-TRP1-F pRS314 TGGCGTCCGGATACAAT
    CTTGATCCGGAGCT
    (SEQ ID NO: 52)
    BSP-TRP1-R TGGCGTCCGGACACAAA
    CAATACTTAAATAAATA
    C(SEQ ID NO: 53)
  • pEASY-rDNA was enzyme digested by using PmeI, and 5122 bp target fragment (30 ng) was purified from gel, 4 μL NEB buffer and 1 μL CIP dephosphorylation enzyme (NEB) was added, and distilled water supplemented to a total volume of 40 μL; it was treated at 37° C. for 1 h, to which EDTA at a final concentration of 10 μmol was added, and it was kept at 65° C. for 30 min to terminate the reaction. 5122 bp target fragment pEASY-rDNA was recovered from gel, and prepared to use. TRP1 (30 ng) was purified from gel, 4 μL of 10×T4 DNA Ligase Reaction Buffer (NEB) and 1 μL of T4 Polynucleotide kinase (NEB) were added, and distilled water was supplemented to a total volume of 40 μL, and it was phosphorylated at 37° C. for 1 h. After being recovered from gel, it was ligated with pEASY-rDNA by using T4 DNA ligase (NEB), transformed into Trans10 competent cells, and verified by sequencing, and thus plasmid pEASY-rDNA-TRP1 was obtained.
  • Example 2: Construction of Recombinant Strains
  • 1. Preparation of Yeast Competent Cells
  • The original strains were respectively cultured in the corresponding medium (Table 13) at 30° C., 250 rpm overnight. 1 mL of the culture suspension (with OD around 0.6-10) was added into a 1.5 mL EP tube, centrifuged at 10,000 g for imin under 4° C.; the resulted supernatant was discarded, the precipitate was washed with sterile water (4° C.) and centrifuged under the same conditions; and the resulted supernatant was discarded. 1 mL of a treatment solution (10 mM LiAc (lithium acetate); 10 mM DTT (dithiothreitol); 0.6M sorbitol; 10 mM Tris-HCl (tris(hydroxymethyl)aminomethane hydrochloride buffer, pH7.5), DTT was added immediately before using the treatment solution) was added into the yeast, and it was kept at 25° C. for 20 min. After centrifugation, the supernatant was discarded, and 1 mL of 1M sorbitol (filtered and sterilized through a 0.22 m aqueous membrane) was added to re-suspend the yeast, then it was centrifuged, and the supernatant was discarded (re-suspended twice with 1M sorbitol) until the final volume became about 90 μL.
  • 2. Construction of Strain FPP-001
  • 1) Preparation of NDT80-HIS3-Up, PPGK1-ADH2-TADH1, PTDH3-ACS1-TTPI1, PTEF1-ALD6-TCYC1 and NDT80-HIS3-Down
  • PPGK1-ADH2-TADH1, PTDH3-ACS1-TTPI1, and PTEF1-ALD6-TCYC1 were expression cassettes carrying alcohol dehydrogenase 2, acetyl-CoA synthetase 1, and acetaldehyde dehydrogenase 6, respectively; NDT80-HIS3-up and NDT80-HIS3-down were the upstream and downstream homology arms of HIS3, respectively; the fragments were respectively amplified according to the following methods:
  • The functional modules were obtained by PCR using the templates and primers of PCR described in Table 9, respectively: 698 bp M1 (NDT80-HIS3-up), 2081 bp M2 (PPGK1-ADH2-TADH1), 3519 bp M3 (PTDH3-ACS1-TTPI1), 2376 bp M4 (PTEF1-ALD6-TCYC1), 1835 bp M5 (NDT80-HIS3-down).
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); extension at 72° C. for 10 min (1 Cycle). The product was recovered from gel and stored.
  • TABLE 9
    Primers
    Amplifi-
    PCR cation
    tem- fragment Primer Primer sequence
    Module plate name name □ 5′→3′□
    M1 pEASY- NDT80- X1-M- CTTGCAAATGCCTATTGT
    NDT80- HIS3- pEASY- GCAGATGTTATAATATCT
    HIS3 UP r-t-F GTGCGTTTAATTAAGGCT
    CGTATGTTGTGTGGAATT
    GT(SEQ ID NO: 54)
    NDT80- CTGGCTTTAAAAAATGGA
    interg-2 TAAAAAGGGATG(SEQ
    ID NO: 55)
    M2 PM2- PPGK1- 1-M- CTGTTTCCTGTGTGAAAT
    ADH2 ADH2- pEASY- TGTTATCCGCTCACAATT
    TADH1 PGK1-F CCACACAACATACGAGCC
    TTAATTAAACGCACAGAT
    ATTATAAC(SEQ ID
    NO: 56)
    3G-1-M- CCTCCGCGTCATTAAACT
    ADHt- TCTTGTTGTTGACGCTAA
    TDH3-R CATTCAACGCTAGTATTC
    GGCATGCCGGTAGAGGTG
    TGG
    (SEQ ID NO: 57)
    M3 PM4- PTDH3- 3G-3-M- CAGGTATAGCATGAGGTC
    ACS1 ACS1- ADHt- GCTCTTATTGACCACACC
    TTPI1 TDH3-F TCTACCGGCATGCCGAAT
    ACTAGCGTTGAATGTTAG
    CGTC
    (SEQ ID NO: 58)
    3G-3-M- AGGAGTAGAAACATTTTG
    TPI1t- AAGCTATGGTGTGTGGGG
    TEF1-R GATCACTTTAATTAATCT
    ATATAACAGTTGAAATTT
    GGA(SEQ ID NO: 59)
    M4 PM3- PTEF1- 3G-2-M- GTCATTTTCGCGTTGAGA
    ALD6 ALD6- TPI1t- AGATGTTCTTATCCAAAT
    TCYC1 TEF1-F TTCAACTGTTATATAGAT
    TAATTAAAGTGATCCCCC
    ACAC(SEQ ID NO: 60)
    M-CYC1- CGTATTACAATTCACTGG
    pEASY-R CCGTCGTTTTACAACGTC
    GTGACTGGGAAAACCCTG
    GCGCGTTGGCCGATTCAT
    TAATGC(SEQID
    NO: 61)
    M5 PEASY- NDT80- NDT80- CATCATAAGGAATTCCGG
    NDT80- HIS3- interg- GATTCTCCCCAT (SEQ
    HIS3 down 1 ID NO: 62)
    X2-M- CGAAGGCTTTAATTTGCA
    pEASY- AGCTGCGGCCCTGCATTA
    r-t-R ATGAATCGGCCAACGCGC
    CAGGGTTTTCCCAGTCAC
    GACGTTG(SEQID
    NO: 63)
  • 2) Construction of Strain FPP-001
  • Original strain Saccharomyces cerevisiae NK2-SQ was cultured in a SD-Ura liquid medium (0.8% yeast selective medium SD-Ura-Trp-His (Beijing FunGenome Technology Co., Ltd.), 2% glucose, 0.005% His, 0.01% Trp) overnight, followed by being prepared into competent cells. Then, the transformation fragments M1, M2, M3, M4 and M5 in Table 9 were added in a total amount of 5 μg (molar ratio=1:1:1:1:1), mixed well and transferred to an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and spread onto a SD-Ura-His medium and cultured at 30° C. for 36 h or more. The ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-Trp-His (Beijing FunGenome Technology Co., Ltd.), 2% glucose, and 0.01% Trp. The true positive clone was identified by PCR, and named as strain FPP-001.
  • 3 Construction of Strains ELE-001 and ELE-002
  • Original strain Saccharomyces cerevisiae FPP-001 was cultured in a SD-Ura-His liquid medium overnight, followed by being prepared into competent cells. Then, plasmids pRS313-LEU2-PTEF1-STpGMAS-TCYC1 and pRS425-LEU2-PTEF1-STpGMAS-TCYC1 were respectively added, mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and spread onto a SD-Ura-His-Leu medium and cultured at 30° C. for 36 h or more. The ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-Trp-His (Beijing FunGenome Technology Co., Ltd.), 2% glucose, and 0.01% Trp. The true positive clone was identified by PCR, and named as strains ELE-001 (into which plasmid pRS313-LEU2-PTEF1-STpGMAS-TCYC1 was transferred) and ELE-002 (into which plasmid pRS425-LEU2-PTEF1-STpGMAS-TCYC1 was transferred), respectively.
  • 4 Construction of Strain ELE-011
  • FPP-001 competent cells were prepared according to the steps in the above item 3. Then, plasmid pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 was added thereto, mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and spread onto a SD-Ura-His-Leu medium and cultured at 30° C. for 36 h or more. The true positive clone was identified by PCR, and named as strain ELE-011.
  • Construction of Strains ELE-012 to ELE-019
  • Using plasmid pRS425-LEU2-PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 as a template, PCR amplification was performed by using the primers of Table 11 to obtain the amplification products corresponding to different primers. Then, the amplification products corresponding to different primers were respectively transferred into yeast FPP-001 for carrying out its own homologous recombination, and recombinant strains ELE-012 to ELE-018 were obtained, respectively. The linker peptide GGGS (SEQ ID NO: 15) of the fusion protein SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS in the vector were replaced with 3A001, 4A001, 5A002, 6A005, 6B004, 8A005, 12A003, respectively (as shown in Table 10).
  • Using plasmid pRS425-LEU2-PMF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 as a template, PCR amplification was performed by using the primers with the linker peptide of 8A005 in Table 10 (Table 11) to obtain the amplification products corresponding to different primers. Then, the amplification products corresponding to the different primers were respectively transferred into yeast FPP-001 for carrying out its own homologous recombination, and recombinant strain ELE-019 was obtained. The linker peptide GGGS (SEQ ID NO: 15) of the fusion protein SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS in the vector was replaced with 8A005.
  • Table 10 Showing the nucleotide sequences and amino acid sequences of linker peptide
  • Linker Nucleotide Amino acid
    peptide sequence sequence of
    name (5′→3′) linker peptide
    3A001 TACGGTCAG YGQ
    4A001 CCGGGGGGACAC PGGH
    (SEQ ID NO: 64) (SEQ ID NO: 16)
    5A002 TATAGAAGTCAAATC YRSQI
    (SEQ ID NO: 65) (SEQ ID NO: 17)
    6A005 GTGATACCTTTTATTTCA VIPFIS
    (SEQ ID NO: 66) (SEQ ID NO: 18)
    6B004 TTTTTGTATCTTAAGTTT FLYLKF
    (SEQ ID NO: 67) (SEQ ID NO: 19)
    8A005 TGGCGGTTCTCGCCGA WRFSPKLQ
    AGCTTCAG (SEQ ID NO: 20)
    (SEQ ID NO: 68)
    12A003 CACCACGTGCAGGAGTCA HHVQESQCISTV
    CAATGTATTTCCACAG
    TG(SEQ ID NO: 69) (SEQ ID NO: 21)
  • The specific reaction conditions were as follows:
  • The above amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (as shown in Table 11) (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 5.5 min (30 cycles); extension at 72° C. for 10 min (1 cycle).
  • The amplification product was digested by using DpnI enzyme from Fermentas Company after being purified. The system thereof included: 5× Fast Digest Green Buffer 4 μL, purified product 34 μL, DpnI 2 μL. The enzyme digestion temperature and reaction time were 37° C. and 1 h, respectively. Finally, it was recovered from gel and stored.
  • TABLE 11
    Primers
    Primer
    Linker Primer sequence
    peptide name (5′→3′)
    3A001 50 bp- CAAGCAGTTTTGAAATCATTTTTG
    3A001- GGTAAAATCTATAAAAGACAAAAA
    STpGmA TACGGTCAGATGGCAGCAGTACAA
    GCAACCAC (SEQ ID NO: 70)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    4A001 50 bp- CAAGCAGTTTTGAAATCATTTTTG
    4A001- GGTAAAATCTATAAAAGACAAAAA
    STpGmA CCGGGGGGACACATGGCAGCAGTA
    CAAGCAACCAC
    (SEQ ID NO: 72)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    5A002 50 bp- CAAGCAGTTTTGAAATCATTTTTG
    5A002- GGTAAAATCTATAAAAGACAAAAA
    STpGmA TATAGAAGTCAAATCATGGCAGCA
    GTACAAGCAACCAC
    (SEQ ID NO: 73)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    6A005 50 bp- CAAGCAGTTTTGAAATCATTTTTG
    6A005- GGTAAAATCTATAAAAGACAAAAA
    STpGmA GTGATACCTTTTATTTCAATGGCA
    GCAGTACAAGCAACCAC
    (SEQ ID NO: 74)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    6B004 50 bp- CAAGCAGTTTTGAAATCATTTTTGG
    6B004- GTAAAATCTATAAAAGACAAAAATT
    STpGmA TTTGTATCTTAAGTTTATGGCAGCA
    GTACAAGCAACCAC
    (SEQ ID NO: 75)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    8A005 50 bp- CAAGCAGTTTTGAAATCATTTTTG
    8A005- GGTAAAATCTATAAAAGACAAAAA
    STpGmA TGGCGGTTCTCGCCGAAGCTTCAG
    ATGGCAGCAGTACAAGCAACCAC
    (SEQ ID NO: 76)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
    12A003 50 bp- CAAGCAGTTTTGAAATCATTTTTGG
    12A003- GTAAAATCTATAAAAGACAAAAACA
    STpGmA CCACGTGCAGGAGTCACAATGTATT
    TCCACAGTGATGGCAGCAGTACAAG
    CAACCAC
    (SEQ ID NO: 77)
    SynSmFPS- TTTTTGTCTTTTATAGATTTTACC
    Linker-R (SEQ ID NO: 71)
  • FPP-001 competent cells were prepared according to the steps in above item 3. Then, the products recovered from gel obtained in the previous step were respectively added thereto, mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and respectively spread onto SD-Ura-His-Leu medium and cultured at 30° C. for 36 h or more. The true positive clone was identified by PCR, and named as strains ELE-012 to ELE-019, respectively.
  • 6 Construction of Recombinant Strain ELE-020
  • 1) Preparation of PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1, PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1, rDNA-TRP1-Up, and rDNA-TRP1-Down
  • PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1 and PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 were expression cassette carrying a fusion protein of yeast farnesyl pyrophosphate synthase and lettuce-derived germacrene A synthetase, and a fusion protein of codon-optimized Salvia miltiorrhiza-derived farnesyl pyrophosphate synthase and codon-optimized Tanacetum parthenium-derived germacrene A synthetase, respectively; and rDNA-TRP1-up and rDNA-TRP1-down were the upstream and downstream homologous arms of rDNA, respectively; the fragments were amplified according to the following methods: The functional modules were obtained by PCR using templates and primers described in Table 12, respectively:
  • M1 (rDNA-TRP1-up)□
    M2 (PPGK1-ERG20-GGGS (SEQ ID NO: 15)-
    LsLTC2-TADH1)□
    M3 (PTEF1-SynSmFPS-GGGS
    (SEQ ID NO: 15)-STpGMAS-TCYC1)□
    M4 (rDNA-TRP1-down).
  • The amplification system included: 5× Phusion HF Buffer 10 μL, dNTP (10 mM each dNTP) 1 μL, DNA template 20 ng, primers (10 μM) 1.5 μL for each, Phusion High-Fidelity DNA Polymerase (2.5 U/μL) 0.5 μL, and distilled water supplemented to a total volume of 50 μL. The amplification conditions were: pre-denaturation at 98° C. for 3 min (1 cycle); denaturation at 98° C. for 10 sec, annealing at 58° C. for 10 sec, extension at 72° C. for 2 min (30 cycles); and extension at 72° C. for 10 min (1 cycle). The product was recovered from gel and stored.
  • TABLE 12
    Primers
    Amplifi-
    PCR cation
    tem- fragment Primer Primer sequence
    Module plate name name □ 5′→3′□
    M1 pEASY- rDNA- X1-M- CTTGCAAATGCCTATTGTG
    rDNA- TRP1- pEASY- CAGATGTTATAATATCTGT
    TRP1 up r-t-F GCGTTTAATTAAGGCTCGT
    ATGTTGTGTGG AATTGT
    (SEEQ ID NO: 54)
    X1-r-t- CTCACTATTTTTTACTGCG
    R-rDNA GAAGCGG
    (SEEQ ID NO: 78)
    M2 pM2-ERG20- PPGK1- 1-M-pEASY- CTGTTTCCTGTGTGAAATT
    GGGS ERG20- PGK1-F GTTATCCGCTCACAATTCC
    (SEQ ID GGGS ACACAACATACGAGCCTT
    NO: 15)- (SEQ ID AATTAAACGCACAGATATT
    LsLTC2 NO: 15)- ATAAC
    LTC2-TADH1 (SEEQ ID NO: 56)
    1-M-ADHt- GGAGTAGAAACATTTTGAA
    TEF1-R GCTATGGTGTGTGGGGGA
    TCACTTTAATTAATCGGCA
    TGCCGGTAGAGGTG
    (SEEQ ID NO: 79)
    M3 pRS425- PTEF1- 2-M-ADHt- GGTATAGCATGAGGTCGC
    LEU2- SynSm FPS- TEF1-F TCTTATTGACCACACCTCT
    PTEF1- GGGS ACCGGCATGCCGATTAATT
    SynSm (SEQ ID AAAGTGATCCCCCA
    FPS- NO: 15)- (SEEQ ID NO: 80)
    GGGS STpGMAS-
    (SEQ TCYC1
    ID
    NO: 15)-
    STpGMAS-
    TCYC1
    M-CYC1- CGTATTACAATTCACTGGC
    pEASY-R CGTCGTTTTACAACGTCGT
    GACTGGGAAAACCCTGGC
    GCGTTGGCCGATTCATTAA
    TGC
    (SEEQ ID NO: 61)
    M4 pEASY- rDNA- X2-r-t-F- GAACTGGGTTACCCGGGG
    rDNA- TRP1- rDNA CACCTGTC
    TRP1 down (SEEQ ID NO: 81)
    X2-M-pEASY- CGAAGGCTTTAATTTGCAA
    r-1-R GCTGCGGCCCTGCATTAA
    TGAATCGGCCAACGCGCC
    AGGGTTTTCCCAGTCACG
    ACGTTG
    (SEEQ ID NO: 63)
  • Original strain Saccharomyces cerevisiae ELE-019 was cultured in a SD-Ura-His-Leu liquid medium overnight, followed by being prepared into competent cells. Then, the transformation fragments M1, M2, M3, and M4 in Table 12 were added in a total amount of 4 μg (molar ratio=1:1:1:1), mixed well and transferred into an electric shock cup, electrically shocked at 2.7 kv for 5.7 ms, to which 1 mL of 1M sorbitol was added, and it was resuscitated at 30° C. for 1 h, and spread onto SD-Ura-His-Leu-Trp medium and cultured at 30° C. for 36 h or more. The ingredients in the screening medium composition were: 0.8% yeast selective medium SD-Ura-His-Leu-Trp (Beijing FunGenome Technology Co., Ltd.), 2% glucose. The true positive clone was identified by PCR, and named as strain ELE-020.
  • This ELE-020 recombinant strain was deposited on Oct. 20, 2017 at the China General Microbiological Culture Collection Center, CGMCC. The deposition address was Building 3, No. 1 West Beichen Road, Chaoyang District, Beijing. The strain name was: Saccharomyces cerevisiae, the latin name thereof is: Saccharomyces cerevisiae; and the deposition number thereof was: CGMCC No. 14829.
  • The information of all the above engineering strains was shown in Table 13.
  • TABLE 13
    Information of engineering strains
    Strain name Basic information Medium
    NK2-SQ PPGK1-tHMG1-TADH1, PPDC1-ERG12-TADH2, PENO2-IDI1-T-PDC1, SD-Ura
    PPYK1-ERG19-TPGI1, PFBA1-ERG13-
    TTDH2, PTDH3-ERG8-TTPI1 and PTEF1-ERG10-TCYC1 and the screening marker
    of URA3 were integrated into GAL7 site of the chromosome of strain CEN. PK2-1D
    (MATaura3-52; trp1-289; leu2-3, 112; his3Δ1; MAL2-8C; SUC2)
    FPP-001 PPGK1-ADH2-TADH1, PTEF1-ALD6-TCYC1, PTDH3-ACS1- SD-Ura-His
    TTPL1 and the screening marker of HIS3 were integrated
    into NDT80 site of the chromosome of strain NK2-SQ
    ELE-001 FPP-001 transferred with pRS313-LEU2-PTEF1-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-002 FPP-001 transferred with pRS425-LEU2-PTEF1-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-011 FPP-001 transferred with pRS425-LEU2-PTEF1- SD-Ura-His-Leu
    SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1
    ELE-012 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-3A001-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-013 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-4A001-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-014 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-5A002-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-015 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-6A005-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-016 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-6B004-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-017 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-8A005-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-018 FPP-001 transferred with pRS425-LEU2-PTEF1-SynSmFPS-12A003-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-019 FPP-001 transferred with pRS425-LEU2-PMF1-SynSmFPS-8A005-STpGMAS-TCYC1 SD-Ura-His-Leu
    ELE-020 PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1, SD-Ura-His-Leu-Trp
    PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-
    STpGMAS-TCYC1 and the screening marker of TRP1
    were integrated into the rDNA site of the chromosome of strain ELE-019
  • Example 3: Application of Recombinant Strain in Producing β-Elemene
  • 1. Engineering Strain Culture and Product Extraction
  • All engineering yeast strains prepared in Example 2 were activated in the corresponding solid selective medium SD-Ura-His-Leu, and seed solutions were prepared in the corresponding liquid selective medium SD-Ura-His-Leu (30° C., 250 rpm, 16 h), inoculated in an amount of 1% into a 100 mL trigonal flask containing 15 mL of the corresponding liquid selective medium, shaken at 250 rpm and cultured at 30° C. for id. Then, 1.5 mL of n-dodecane was added thereto, and continued to be shaken and cultured for 5 d. Finally, the liquid in the trigonal flask was transferred to a 50 mL centrifuge tube, centrifuged at 5,000 rpm for 5 min, and the organic phase was collected for use.
  • 2. β-Elemene Conversion and its Qualitative and Quantitative Analyses
  • 1) β-Elemene Conversion
  • The above organic phase sample was heated in an oil bath at 100-380° C. (180° C.) within a fuming cupboard for 1 h to obtain a converted material.
  • 2) Detection
  • The converted material was diluted 10 times with n-hexane, filtered through an organic nylon membrane (0.22 μm), and detected by using GC-MS. Testing equipment: Agilent GCMSD Agilent 7890A/5975C; GC-MS measurement conditions: inlet temperature 250° C., injection volume 1 μL, splitless, solvent delay 3 min; column: HP-5 ms (30 m*0.25 mm); Chromatographic conditions: 45° C. for 1 min, warming up to 300° C. at 10° C./min and keeping for 5 min; MS conditions: Full Scan: 50-750 amu. Qualitative and quantitative analyses were carried out by using the standard of β-elemene, which was purchased from the China National Institutes for Food and Drug Control (Cat. No. 100268). FIG. 2 is a GC-MS test chromatomap of 3-elemene produced by all engineering yeast strains prepared in Example 2.
  • As a result, the yield of each engineering strain after fermentation for 6 days was as follows:
  • Engineering strains ELE-001 and ELE-002 were obtained by introducing low and high copy number of STpGMAS based on FPP-001. Wherein, the yield of β-elemene of ELE-001 reached 9.3 mg/L, and the yield of β-elemene of ELE-002 reached 22.1 mg/L;
  • Engineering strain ELE-011 was obtained by introducing high copy number of fusion protein gene SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS based on FPP-001, and the yield of β-elemene reached 101.1 mg/L.
  • Engineering strains ELE-012 to ELE-019 (the promoters and linkers thereof were TEF1 and 3A001, TEF1 and 4A001, TEF1 and 5A002, TEF1 and 6A005, TEF1 and 6B004, TEF1 and 8A005, TEF1 and 12A003, MF1 and 8A005, respectively) were obtained by introducing high copy number of fusion protein gene SynSmFPS-Linker-STpGMAS based on FPP-001.
  • Engineering strain ELE-020 was obtained by the recombination and introduction of fusion protein genes PPGK1-ERG20-GGGS (SEQ ID NO: 15)-LsLTC2-TADH1 and PTEF1-SynSmFPS-GGGS (SEQ ID NO: 15)-STpGMAS-TCYC1 based on ELE-019.
  • The yields of β-elemene produced by using strains ELE-012 to ELE-020 were 2.2 mg/L (relative to the culture solution), 35.5 mg/L, 110.4 mg/L, 108.6 mg/L, 73.6 mg/L, 109.7 mg/L, 48.3 mg/L, 158.1 mg/L and 469 mg/L, respectively.
  • 3. Bioreactor Fermentation Culture
  • 1) Medium Formulation
  • The calcium chloride mother liquid: 19.2 g/L aqueous solution of calcium chloride dihydrate.
  • The trace metal salt mother liquid: 19.1 g/L of disodium ethylenediamine tetraacetate, 10.2 g/L of zinc sulfate heptahydrate, 0.5 g/L of manganese chloride tetrahydrate, 0.86 g/L of cobalt chloride hexahydrate, 0.78 g/L of copper sulfate pentahydrate, 0.56 g/L of sodium molybdate dehydrate, and 5.12 g/L of iron sulphite heptahydrate.
  • The vitamin mother liquid: 0.05 g/L of biotin, 0.2 g/L of sodium p-aminobenzoate, 1 g/L of niacin, 1 g/L of calcium pantothenate, 1 g/L pyridoxine hydrochloride, 1 g/L of thiamine hydrochloride, and 25 g/L of inositol.
  • The seed medium and the fermentation medium: 25 g/L of glucose, 15 g/L of ammonium sulfate, 6.15 g/L of magnesium sulfate heptahydrate, 0.72 g/L of zinc sulfate heptahydrate, 8 g/L of potassium dihydrogen phosphate, 2 mL/L of calcium chloride mother liquid, 10 mL/L of trace metal salt mother liquid; 12 mL/L of vitamin mother liquid, 1 g/L of tryptophan, and the balance of water.
  • The fed-batch medium: 800 g/L of glucose, 5.125 g/L of magnesium sulfate heptahydrate, 3.5 g/L of potassium sulfate, 0.28 g/L of sodium sulfate, 9 g/L of potassium dihydrogen phosphate, 1 g/L of tryptophan, and the balance of water.
  • 2) Fermentation of Engineering Strain ELE-019
  • The engineering strain ELE-019 was activated according to the methods in item 1. The monoclonal colony on the plate was picked up and inoculated into a test tube containing SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. overnight; 500 μL of the strain culture was pipetted into a 250 mL trigonal flask containing 50 mL of SD-Ura-His-Leu medium, and shaken at 250 rpm and cultured at 30° C. for 24 h.
  • 2 mL of the strain culture was respectively pipetted into three 1 L trigonal flasks containing 100 mL of seed medium, shaken at 250 rpm and cultured at 30° C. for 48 h; finally, the seed solution was inoculated into a 7 L fermentation tank containing 3 L of the fermentation medium via a flame inoculation loop (Eppendorf Company, Germany, model no.: BioFlo®320).
  • The parameters set in the fermentation process were: temperature 30° C., pH 5.0, dissolved oxygen 30%, air flow rate 3-20 L/min, stirring speed 300-1000 rpm; and dissolved oxygen were cascading with stirring speed and air flowing. When the dissolved oxygen value was greater than 60%, the fed-batch medium was added into the fermentation tank until the glucose concentration in the fermentation liquid was 5 g/L.
  • Three hours before the end of the fermentation, 10% (relative to the volume of the culture solution) of n-dodecane was added, and after the end of the fermentation, the organic phase was separated.
  • After the treatment carried out according to the conversion and detection methods in item 2, qualitative and quantitative analyses were performed. After high-density fermentation of the engineering strain ELE-019 for 96 hours, 2 g/L (relative to the culture solution) of β-elemene may be obtained. The recombinant strains complying with the object of the present invention, including but not limited to the specific experimental examples described in Table 13, may be subjected to a fermentation culture according to the fermentation methods described in item “3” to obtain germacrene A.
  • INDUSTRIAL APPLICATION
  • The experiments of the present invention verified that a recombinant strain can be obtained by expressing germacrene A synthetase gene or fusion protein gene thereof in a host yeast in the present invention, which can greatly improve the yield of germacrene A. It is suitable for industrial production of β-elemene and/or germacrene A, and provides a potent strain and research basis for the biosynthesis of anti-cancer raw material β-elemene.

Claims (1)

What is claimed is:
1. A recombinant strain, which is a yeast comprising or expressing germacrene A synthetase or a fusion protein of germacrene A synthetase m vivo;
the fusion protein of germacrene A synthetase comprises the germacrene A synthetase and farnesyl pyrophosphate synthase.
US17/812,157 2016-11-04 2022-07-12 Recombinant yeast and use thereof Abandoned US20220396759A1 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
US17/812,157 US20220396759A1 (en) 2016-11-04 2022-07-12 Recombinant yeast and use thereof
US18/456,333 US20240010969A1 (en) 2016-11-04 2023-08-25 Recombinant yeast and use thereof

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
CN201610961269 2016-11-04
CN201610961269.5 2016-11-04
PCT/CN2017/109029 WO2018082588A1 (en) 2016-11-04 2017-11-02 Recombinant yeast and use thereof
US201916347552A 2019-05-03 2019-05-03
US17/812,157 US20220396759A1 (en) 2016-11-04 2022-07-12 Recombinant yeast and use thereof

Related Parent Applications (2)

Application Number Title Priority Date Filing Date
US16/347,552 Continuation US11421199B2 (en) 2016-11-04 2017-11-02 Recombinant yeast and use thereof
PCT/CN2017/109029 Continuation WO2018082588A1 (en) 2016-11-04 2017-11-02 Recombinant yeast and use thereof

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US18/456,333 Continuation US20240010969A1 (en) 2016-11-04 2023-08-25 Recombinant yeast and use thereof

Publications (1)

Publication Number Publication Date
US20220396759A1 true US20220396759A1 (en) 2022-12-15

Family

ID=62075401

Family Applications (3)

Application Number Title Priority Date Filing Date
US16/347,552 Active 2038-02-08 US11421199B2 (en) 2016-11-04 2017-11-02 Recombinant yeast and use thereof
US17/812,157 Abandoned US20220396759A1 (en) 2016-11-04 2022-07-12 Recombinant yeast and use thereof
US18/456,333 Pending US20240010969A1 (en) 2016-11-04 2023-08-25 Recombinant yeast and use thereof

Family Applications Before (1)

Application Number Title Priority Date Filing Date
US16/347,552 Active 2038-02-08 US11421199B2 (en) 2016-11-04 2017-11-02 Recombinant yeast and use thereof

Family Applications After (1)

Application Number Title Priority Date Filing Date
US18/456,333 Pending US20240010969A1 (en) 2016-11-04 2023-08-25 Recombinant yeast and use thereof

Country Status (5)

Country Link
US (3) US11421199B2 (en)
EP (1) EP3536792A4 (en)
JP (1) JP7129990B2 (en)
CN (1) CN108060092B (en)
WO (1) WO2018082588A1 (en)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111423300B (en) * 2019-01-10 2023-02-28 四川弘合生物科技有限公司 Preparation method of beta elemene
CN111154665B (en) * 2020-01-21 2021-02-02 南京工业大学 Recombinant yarrowia lipolytica and construction method and application thereof
CN111187786A (en) * 2020-02-03 2020-05-22 天津大学 Recombinant vector and application thereof in preparation of bicarboxin
CN112063540B (en) * 2020-09-21 2022-05-17 山东大学 Recombinant strain for producing beta-elemene or germacrene A
CN113249282B (en) * 2021-04-23 2023-06-20 大连大学 Recombinant bacterium for producing beta-elemene and construction method and application thereof
CN115247183B (en) * 2021-04-28 2024-03-19 中国科学院天津工业生物技术研究所 Construction method of recombinant microorganism, related biological material and application thereof
CN115305254B (en) * 2021-05-08 2024-03-26 中国科学院天津工业生物技术研究所 Terpenoid chassis microorganism and engineering bacterium as well as construction method and application thereof
CN115322913B (en) * 2021-05-10 2024-03-22 中国科学院天津工业生物技术研究所 Recombinant saccharomyces cerevisiae for producing rose essential oil, and construction method and application thereof
CN114672425B (en) * 2022-04-11 2023-09-15 湖北工业大学 Recombinant saccharomyces cerevisiae for producing alpha-gulene and application thereof
CN116064266A (en) * 2022-11-01 2023-05-05 四川大学 Recombinant saccharomyces cerevisiae with enhanced salt stress resistance, and construction method and application thereof

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20150079646A1 (en) * 2012-01-06 2015-03-19 Firmenich Sa Genetically engineered yeast cells

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH06261741A (en) 1993-03-11 1994-09-20 Nippon Sharyo Seizo Kaisha Ltd Method of multiplying microorganism
DE602004019811D1 (en) 2003-11-26 2009-04-16 Firmenich & Cie SQUESTRIAN SYNTHESIS FROM PATCHOULI
AU2005269556B2 (en) 2004-07-27 2011-10-27 The Regents Of The University Of California Genetically modified host cells and use of same for producing isoprenoid compounds
CN101928716A (en) 2009-06-30 2010-12-29 中国中医科学院中药研究所 SmFPS (Salviamiltiorrhizabge Farnesyl Pyrophosphate Synthase) gene as well as coded protein and application thereof
KR101137026B1 (en) 2009-10-30 2012-04-19 한국생명공학연구원 Yeast Variant and Method of Producing Squalene Using the Same
PL2569427T3 (en) 2010-05-10 2018-02-28 Firmenich Sa Method for producing patchoulol and 7-epi-alpha-selinene
SG11201701278RA (en) * 2014-08-21 2017-03-30 Manus Biosynthesis Inc Methods for production of oxygenated terpenes

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20150079646A1 (en) * 2012-01-06 2015-03-19 Firmenich Sa Genetically engineered yeast cells

Non-Patent Citations (8)

* Cited by examiner, † Cited by third party
Title
"Tanacetum parthenium germacrene A synthase (GAS) mRNA, complete cds" GeneBank: JF819848.1 - Retrieved from < https://www.ncbi.nlm.nih.gov/nuccore/JF819848.1 > on 27 February 2023. *
Albersen et al., "Diversion of Flux toward Sesquiterpene Production in Saccharomyces cerevisiae by Fusion of Host and Heterologous Enzymes" App. Env. Micro., Feb 2011, 77(3):1033-1040. *
Bennett et al., "Cloning and expression of sesquiterpene synthase genes from lettuce (Lactuca sativa L.)" Phytochemistry, 2002, 60:255-261. *
Faralodos et al., "Conformational Analysis of (+)-Germacrene A by Variable Temperature NMR and NOE Spectroscopy", Tetrahedron, 2007, 63(32):7733-7742. *
Göpfert et al., "Identification and Functional Characterization of a new Sunflower Germacrene A Synthase (HaGAS3)", Natural Product Communications, 2010, 5(5):709-715. *
Hu et al., "Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae", Genome Res., 2007, 17(4):536-543. *
Liu et al., "Reconstitution of the Costunolide Biosynthetic Pathway in Yeast and Nicotiana benthamiana" PlosONE, Aguust 2011, PLoS ONE 6(8): e23255. 12 pages. *
Majdi et al., "Biosynthesis and localization of parthenolide in glandular trichomes of feverfew (Tanacetum parthenium L. Schulz Bip.)", Phytochemistry, May 2011, 72(14-15):1739-1750. *

Also Published As

Publication number Publication date
EP3536792A1 (en) 2019-09-11
JP7129990B2 (en) 2022-09-02
JP2020503888A (en) 2020-02-06
US20240010969A1 (en) 2024-01-11
US11421199B2 (en) 2022-08-23
US20200362297A1 (en) 2020-11-19
CN108060092B (en) 2021-08-27
EP3536792A4 (en) 2020-07-01
WO2018082588A1 (en) 2018-05-11
CN108060092A (en) 2018-05-22

Similar Documents

Publication Publication Date Title
US20220396759A1 (en) Recombinant yeast and use thereof
CN104736696B (en) Gene and method for generating clavine type alkaloid
CN106367361B (en) A kind of saccharomyces cerevisiae engineered yeast strain and its construction method, application
CN116064264A (en) Method for producing recombinant host cells with improved tolerance to terpenes or essential oils containing terpenes and uses thereof
CN113416748A (en) Expression vector for synthesizing cannabidiol, heterologous expression method and application
CN111154665B (en) Recombinant yarrowia lipolytica and construction method and application thereof
CN114107078A (en) High-yield valencene genetic engineering bacterium and construction method and application thereof
Wang et al. Molecular cloning, characterization, and heterologous expression of an acetyl-CoA acetyl transferase gene from Sanghuangporus baumii
WO2023208037A1 (en) Nerolidol synthase and use thereof
CN106893726B (en) Promoter and recombinant yeast strain
CN114107079B (en) Oil-resistant saccharomyces cerevisiae genetically engineered bacteria and construction method thereof
CN114085784B (en) Recombinant yeast for high expression of cytochrome P450 and application thereof
CN113736677B (en) Recombinant yarrowia lipolytica for high yield of tocotrienol, construction method and application thereof
CN107903227B (en) Succinic anhydride compound, gene and protein related to succinic anhydride compound and preparation method of succinic anhydride compound
CN114672425B (en) Recombinant saccharomyces cerevisiae for producing alpha-gulene and application thereof
CN115322913B (en) Recombinant saccharomyces cerevisiae for producing rose essential oil, and construction method and application thereof
CN115305254B (en) Terpenoid chassis microorganism and engineering bacterium as well as construction method and application thereof
WO2016106988A1 (en) Recombinant eukaryotic strain for producing taxadiene and method for preparing taxadiene using same
CN114525215B (en) Recombinant strain for producing terpenoid, construction method thereof, method for producing terpenoid through fermentation and application of recombinant strain
CN106987601B (en) Construction of recombinant vector of monascus polyketide synthase gene PKS1 and expression of recombinant vector in recombinant aspergillus oryzae
CN117965507A (en) Recombinant microorganism for obtaining alpha-farnesene and beta-farnesene and construction method thereof
CN116064639A (en) Monoterpene synthase, genetically engineered strain and application thereof
CN117187225A (en) Nerolidol synthetase and application
CN104342408A (en) Preparation method of recombinant cordyceps sinensis superoxide dismutase (rcSOD)
CN117925588A (en) Nerolidol synthetase and application

Legal Events

Date Code Title Description
AS Assignment

Owner name: INSTITUTE OF CHINESE MATERIA MEDICA, CHINA ACADEMY OF CHINESE MEDICAL SCIENCES, CHINA

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNORS:ZHANG, XUELI;HUANG, LUQI;DAI, ZHUBO;AND OTHERS;SIGNING DATES FROM 20190403 TO 20190404;REEL/FRAME:060499/0671

Owner name: TIANJIN INSTITUTE OF INDUSTRIAL BIOTECHNOLOGY, CHINESE ACADEMY OF SCIENCES, CHINA

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNORS:ZHANG, XUELI;HUANG, LUQI;DAI, ZHUBO;AND OTHERS;SIGNING DATES FROM 20190403 TO 20190404;REEL/FRAME:060499/0671

STPP Information on status: patent application and granting procedure in general

Free format text: DOCKETED NEW CASE - READY FOR EXAMINATION

STPP Information on status: patent application and granting procedure in general

Free format text: NON FINAL ACTION MAILED

STCB Information on status: application discontinuation

Free format text: ABANDONED -- FAILURE TO RESPOND TO AN OFFICE ACTION