US20200071322A1 - Inhibiting (alpha-v)(beta-6) integrin - Google Patents

Inhibiting (alpha-v)(beta-6) integrin Download PDF

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US20200071322A1
US20200071322A1 US16/555,589 US201916555589A US2020071322A1 US 20200071322 A1 US20200071322 A1 US 20200071322A1 US 201916555589 A US201916555589 A US 201916555589A US 2020071322 A1 US2020071322 A1 US 2020071322A1
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mmol
compound
tetrahydro
alkylene
acetate
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US16/555,589
Inventor
Bryce A. Harrison
James E. Dowling
Matthew G. Bursavich
Dawn M. Troast
Blaise S. Lippa
Bruce N. Rogers
Kristopher N. Hahn
Cheng Zhong
Qi Qiao
Fu-Yang Lin
Brian Sosa
Aleksey I. Gerasyuto
Andrea Bortolato
Mats A. SVENSSON
Eugene Hickey
Kyle D. Konze
Tyler Day
Byungchan KIM
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Schroedinger LLC
Morphic Therapeutic Inc
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Morphic Therapeutic Inc
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Priority to US16/555,589 priority Critical patent/US20200071322A1/en
Assigned to SCHRÖDINGER, INC. reassignment SCHRÖDINGER, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: BORTOLATO, ANDREA, DAY, Tyler, GERASYUTO, ALEKSEY I., KIM, BYUNGCHAN, KONZE, KYLE D., HICKEY, EUGENE, SVENSSON, MATS A.
Assigned to SCHRÖDINGER, LLC reassignment SCHRÖDINGER, LLC ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SCHRÖDINGER, INC.
Assigned to MORPHIC THERAPEUTIC, INC. reassignment MORPHIC THERAPEUTIC, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SCHRÖDINGER, LLC
Assigned to MORPHIC THERAPEUTIC, INC. reassignment MORPHIC THERAPEUTIC, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SOSA, Brian, BURSAVICH, MATTHEW G., DOWLING, JAMES E., HAHN, KRISTOPHER N., HARRISON, BRYCE A., LIN, FU-YANG, LIPPA, Blaise S., QIAO, QI, ROGERS, BRUCE N., TROAST, DAWN M., ZHONG, CHENG
Publication of US20200071322A1 publication Critical patent/US20200071322A1/en
Priority to US16/939,848 priority patent/US20200354359A1/en
Priority to US17/001,086 priority patent/US11021480B2/en
Priority to US17/239,045 priority patent/US11739087B2/en
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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04—Ortho-condensed systems
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00—Medicinal preparations containing organic active ingredients
    • A61K31/33—Heterocyclic compounds
    • A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/4353—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/4375—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a six-membered ring having nitrogen as a ring heteroatom, e.g. quinolizines, naphthyridines, berberine, vincamine
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K9/00—Medicinal preparations characterised by special physical form
    • A61K9/0012—Galenical forms characterised by the site of application
    • A61K9/0053—Mouth and digestive tract, i.e. intraoral and peroral administration

Definitions

  • This disclosure relates to novel chemical compounds and methods useful for inhibiting ⁇ v ⁇ 6 integrin.
  • the heterodimeric integrin family of receptors modulate cellular shape and cell adhesion to the extracellular matrix in response to extrinsic and intrinsic cues.
  • Integrin signaling controls cell survival, cell cycle progression, cell differentiation, and cell migration.
  • the integrin receptor exclusively can signal a cell bi-directionally, both “inside-out” and “outside-in.” Thus, they mediate cell migration by transmitting forces from the extracellular matrix to the cytoskeleton and regulate cytoskeletal organization to achieve shape changes needed during cell migration.
  • RGD-binding integrins can bind to and activate TGF- ⁇ , and have recently been implicated in fibrotic disease.
  • Integrins are expressed on the surface of most of human cells. Their pathology contributes to a diverse set of human diseases, including platelet disorders, atherosclerosis, cancer, osteoporosis, fibrosis, diabetic neuropathy of the kidney, macular degeneration and various autoimmune and chronic inflammation diseases.
  • integrin inhibitors There exists a need for new classes of integrin inhibitors. There has been a notable absence of therapeutic success with orally bioavailable integrin inhibitors. Accordingly, there remains a need for a small molecule integrin inhibitor of ⁇ v ⁇ 6 suitable for oral administration.
  • the oral administration route is preferred for small-molecule delivery as it allows a wide range of doses to be administered, allows convenient patient self-administration, is adaptable to varying dosage regimens and needs no special equipment. Therefore, it is important to identify of ⁇ v ⁇ 6 integrin inhibitor compounds that are not only potent at the intended biological target, but are also demonstrating other characteristics relating to the ability of the compound to be absorbed in the body (e.g, after oral delivery) in a therapeutically effective manner.
  • ⁇ v ⁇ 6 integrin inhibitor compounds can be selected based on both potency and based on performance in an in vitro permeability assay (e.g., evaluating the ability of compounds to cross a layer of Madin-Darby Canine Kidney (MDCK) cells from the apical to basolateral side (A->B)).
  • MDCK Madin-Darby Canine Kidney
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to a method of treating a disease or a condition selected from the group consisting of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, and cardiac fibrosis comprising the step of: administering to a subject in need thereof a therapeutically effective amount of any one of the compounds described herein.
  • FIG. 1 is a table summarizing inhibition of ⁇ v ⁇ 6 integrin by exemplary compounds, as measured in a fluorescence polarization assay.
  • FIG. 2 is a table summarizing inhibition of ⁇ v ⁇ 6 integrin by exemplary compounds, as measured in a fluorescence polarization assay.
  • FIG. 3 is a table summarizing permeability properties of exemplary compounds from FIG. 1 measured in a MDCK in vitro assay of Example 36.
  • FIG. 4 is a table summarizing permeability properties of exemplary compounds from FIG. 2 measured in a MDCK in vitro assay of Example 36.
  • the invention relates to compounds that inhibit ⁇ v ⁇ 6 integrin.
  • the compounds are selective for ⁇ v ⁇ 6 integrin.
  • the compounds will be useful for the treatment of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease, radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, or cardiac fibrosis.
  • an element means one element or more than one element.
  • a reference to “A and/or B”, when used in conjunction with open-ended language such as “comprising” can refer, in one embodiment, to A only (optionally including elements other than B); in another embodiment, to B only (optionally including elements other than A); in yet another embodiment, to both A and B (optionally including other elements); etc.
  • the phrase “at least one,” in reference to a list of one or more elements, should be understood to mean at least one element selected from any one or more of the elements in the list of elements, but not necessarily including at least one of each and every element specifically listed within the list of elements and not excluding any combinations of elements in the list of elements.
  • This definition also allows that elements may optionally be present other than the elements specifically identified within the list of elements to which the phrase “at least one” refers, whether related or unrelated to those elements specifically identified.
  • “at least one of A and B” can refer, in one embodiment, to at least one, optionally including more than one, A, with no B present (and optionally including elements other than B); in another embodiment, to at least one, optionally including more than one, B, with no A present (and optionally including elements other than A); in yet another embodiment, to at least one, optionally including more than one, A, and at least one, optionally including more than one, B (and optionally including other elements); etc.
  • compositions of the present invention may exist in particular geometric or stereoisomeric forms.
  • polymers of the present invention may also be optically active.
  • the present invention contemplates all such compounds, including cis- and trans-isomers, R- and S-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention.
  • Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
  • a particular enantiomer of compound of the present invention may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers.
  • the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means well known in the art, and subsequent recovery of the pure enantiomers.
  • Structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
  • compounds produced by the replacement of a hydrogen with deuterium or tritium, or of a carbon with a 13 C- or 14 C-enriched carbon are within the scope of this invention.
  • prodrug encompasses compounds that, under physiological conditions, are converted into therapeutically active agents.
  • a common method for making a prodrug is to include selected moieties that are hydrolyzed under physiological conditions to reveal the desired molecule.
  • the prodrug is converted by an enzymatic activity of the host animal.
  • phrases “pharmaceutically acceptable excipient” or “pharmaceutically acceptable carrier” as used herein means a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting the subject chemical from one organ or portion of the body, to another organ or portion of the body.
  • Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation, not injurious to the patient, and substantially non-pyrogenic.
  • materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose, and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose, and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil, and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol, and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum
  • salts refers to the relatively non-toxic, inorganic and organic acid addition salts of the compound(s). These salts can be prepared in situ during the final isolation and purification of the compound(s), or by separately reacting a purified compound(s) in its free base form with a suitable organic or inorganic acid, and isolating the salt thus formed.
  • Representative salts include the hydrobromide, hydrochloride, sulfate, bisulfate, phosphate, nitrate, acetate, valerate, oleate, palmitate, stearate, laurate, benzoate, lactate, phosphate, tosylate, citrate, maleate, fumarate, succinate, tartrate, naphthylate, mesylate, glucoheptonate, lactobionate, and laurylsulphonate salts, and the like.
  • lactate lactate
  • phosphate tosylate
  • citrate maleate, fumarate, succinate, tartrate, naphthylate, mesylate, glucoheptonate, lactobionate, and laurylsulphonate salts, and the like.
  • the compounds useful in the methods of the present invention may contain one or more acidic functional groups and, thus, are capable of forming pharmaceutically acceptable salts with pharmaceutically acceptable bases.
  • pharmaceutically acceptable salts refers to the relatively non-toxic inorganic and organic base addition salts of a compound(s). These salts can likewise be prepared in situ during the final isolation and purification of the compound(s), or by separately reacting the purified compound(s) in its free acid form with a suitable base, such as the hydroxide, carbonate, or bicarbonate of a pharmaceutically acceptable metal cation, with ammonia, or with a pharmaceutically acceptable organic primary, secondary, or tertiary amine.
  • Representative alkali or alkaline earth salts include the lithium, sodium, potassium, calcium, magnesium, and aluminum salts, and the like.
  • Representative organic amines useful for the formation of base addition salts include ethylamine, diethylamine, ethylenediamine, ethanolamine, diethanolamine, piperazine, and the like (see, for example, Berge et al., supra).
  • a “therapeutically effective amount” (or “effective amount”) of a compound with respect to use in treatment refers to an amount of the compound in a preparation which, when administered as part of a desired dosage regimen (to a mammal, preferably a human) alleviates a symptom, ameliorates a condition, or slows the onset of disease conditions according to clinically acceptable standards for the disorder or condition to be treated or the cosmetic purpose, e.g., at a reasonable benefit/risk ratio applicable to any medical treatment.
  • prophylactic or therapeutic treatment is art-recognized and includes administration to the host of one or more of the subject compositions. If it is administered prior to clinical manifestation of the unwanted condition (e.g., disease or other unwanted state of the host animal) then the treatment is prophylactic, (i.e., it protects the host against developing the unwanted condition), whereas if it is administered after manifestation of the unwanted condition, the treatment is therapeutic, (i.e., it is intended to diminish, ameliorate, or stabilize the existing unwanted condition or side effects thereof).
  • the unwanted condition e.g., disease or other unwanted state of the host animal
  • a patient refers to a mammal in need of a particular treatment.
  • a patient is a primate, canine, feline, or equine.
  • a patient is a human.
  • An aliphatic chain comprises the classes of alkyl, alkenyl and alkynyl defined below.
  • a straight aliphatic chain is limited to unbranched carbon chain moieties.
  • the term “aliphatic group” refers to a straight chain, branched-chain, or cyclic aliphatic hydrocarbon group and includes saturated and unsaturated aliphatic groups, such as an alkyl group, an alkenyl group, or an alkynyl group.
  • Alkyl refers to a fully saturated cyclic or acyclic, branched or unbranched carbon chain moiety having the number of carbon atoms specified, or up to 30 carbon atoms if no specification is made.
  • alkyl of 1 to 8 carbon atoms refers to moieties such as methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, and octyl, and those moieties which are positional isomers of these moieties.
  • Alkyl of 10 to 30 carbon atoms includes decyl, undecyl, dodecyl, tridecyl, tetradecyl, pentadecyl, hexadecyl, heptadecyl, octadecyl, nonadecyl, eicosyl, heneicosyl, docosyl, tricosyl and tetracosyl.
  • a straight chain or branched chain alkyl has 30 or fewer carbon atoms in its backbone (e.g., C 1 -C 30 for straight chains, C 3 -C 30 for branched chains), and more preferably 20 or fewer.
  • Alkyl groups may be substituted or unsubstituted.
  • alkylene refers to an alkyl group having the specified number of carbons, for example from 2 to 12 carbon atoms, that contains two points of attachment to the rest of the compound on its longest carbon chain.
  • alkylene groups include methylene —(CH 2 )—, ethylene —(CH 2 CH 2 )—, n-propylene —(CH 2 CH 2 CH 2 )—, isopropylene —(CH 2 CH(CH 3 ))—, and the like.
  • Alkylene groups can be cyclic or acyclic, branched or unbranched carbon chain moiety, and may be optionally substituted with one or more substituents.
  • Cycloalkyl means mono- or bicyclic or bridged or spirocyclic, or polycyclic saturated carbocyclic rings, each having from 3 to 12 carbon atoms. Likewise, preferred cycloalkyls have from 3-10 carbon atoms in their ring structure, and more preferably have 3-6 carbons in the ring structure. Cycloalkyl groups may be substituted or unsubstituted.
  • lower alkyl means an alkyl group, as defined above, but having from one to ten carbons, more preferably from one to six carbon atoms in its backbone structure such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, and tert-butyl.
  • lower alkenyl and “lower alkynyl” have similar chain lengths.
  • preferred alkyl groups are lower alkyls.
  • a substituent designated herein as alkyl is a lower alkyl.
  • Alkenyl refers to any cyclic or acyclic, branched or unbranched unsaturated carbon chain moiety having the number of carbon atoms specified, or up to 26 carbon atoms if no limitation on the number of carbon atoms is specified; and having one or more double bonds in the moiety.
  • Alkenyl of 6 to 26 carbon atoms is exemplified by hexenyl, heptenyl, octenyl, nonenyl, decenyl, undecenyl, dodenyl, tridecenyl, tetradecenyl, pentadecenyl, hexadecenyl, heptadecenyl, octadecenyl, nonadecenyl, eicosenyl, heneicosoenyl, docosenyl, tricosenyl, and tetracosenyl, in their various isomeric forms, where the unsaturated bond(s) can be located anywhere in the moiety and can have either the (Z) or the (E) configuration about the double bond(s).
  • Alkynyl refers to hydrocarbyl moieties of the scope of alkenyl, but having one or more triple bonds in the moiety.
  • alkylthio refers to an alkyl group, as defined above, having a sulfur moiety attached thereto.
  • the “alkylthio” moiety is represented by one of —(S)-alkyl, —(S)-alkenyl, —(S)-alkynyl, and —(S)—(CH 2 ) m —R 1 , wherein m and R 1 are defined below.
  • Representative alkylthio groups include methylthio, ethylthio, and the like.
  • alkoxyl or alkoxy refers to an alkyl group, as defined below, having an oxygen moiety attached thereto.
  • alkoxyl groups include methoxy, ethoxy, propoxy, tert-butoxy, and the like.
  • An “ether” is two hydrocarbons covalently linked by an oxygen. Accordingly, the substituent of an alkyl that renders that alkyl an ether is or resembles an alkoxyl, such as can be represented by one of —O-alkyl, —O-alkenyl, —O— alkynyl, —O—(CH 2 ) m —R 10 , where m and R 10 are described below.
  • amine and “amino” are art-recognized and refer to both unsubstituted and substituted amines, e.g., a moiety that can be represented by the formulae:
  • R 11 , R 12 and R 13 each independently represent a hydrogen, an alkyl, an alkenyl, —(CH 2 ) m —R 10 , or R 11 and R 12 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure;
  • R 10 represents an alkenyl, aryl, cycloalkyl, a cycloalkenyl, a heterocyclyl, or a polycyclyl; and m is zero or an integer in the range of 1 to 8.
  • only one of R 11 or R 12 can be a carbonyl, e.g., R 11 , R 12 , and the nitrogen together do not form an imide.
  • R 11 and R 12 each independently represent a hydrogen, an alkyl, an alkenyl, or —(CH 2 ) m — R 10 .
  • alkylamine as used herein means an amine group, as defined above, having a substituted or unsubstituted alkyl attached thereto, i.e., at least one of R 11 and R 12 is an alkyl group.
  • an amino group or an alkylamine is basic, meaning it has a conjugate acid with a pK a >7.00, i.e., the protonated forms of these functional groups have pK a s relative to water above about 7.00.
  • amide refers to a group
  • each R 14 independently represent a hydrogen or hydrocarbyl group, or two R 14 are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • aryl as used herein includes 3- to 12-membered substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon (i.e., carbocyclic aryl) or where one or more atoms are heteroatoms (i.e., heteroaryl).
  • aryl groups include 5- to 12-membered rings, more preferably 6- to 10-membered rings
  • aryl also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Carboycyclic aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
  • Heteroaryl groups include substituted or unsubstituted aromatic 3- to 12-membered ring structures, more preferably 5- to 12-membered rings, more preferably 5- to 10-membered rings, whose ring structures include one to four heteroatoms.
  • Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, triazole, pyrazole, pyridine, pyrazine, pyridazine and pyrimidine, and the like.
  • Aryl and heteroaryl can be monocyclic, bicyclic, or polycyclic.
  • Each instance of an aryl group may be independently optionally substituted, i.e., unsubstituted (an “unsubstituted aryl”) or substituted (a “substituted aryl”) with one or more substituents; e.g., for instance from 1 to 5 substituents, 1 to 4 substituents, 1 to 3 substituents, 1 to 2 substituents or just 1 substituent.
  • the aromatic ring may be substituted at one or more ring positions with one or more substituents, such as halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, fluoroalkyl (such as trifluromethyl), cyano, or the like.
  • the aryl group can be an unsubstituted C 5 -C 12 aryl and in certain embodiments, the aryl group can be a substituted C 5 -C 10 aryl.
  • halo means halogen and includes, for example, and without being limited thereto, fluoro, chloro, bromo, iodo and the like, in both radioactive and non-radioactive forms.
  • halo is selected from the group consisting of fluoro, chloro and bromo.
  • heterocyclyl or “heterocyclic group” refer to 3- to 12-membered ring structures, more preferably 5- to 12-membered rings, more preferably 5- to 10-membered rings, whose ring structures include one to four heteroatoms.
  • Heterocycles can be monocyclic, bicyclic, spirocyclic, or polycyclic.
  • Heterocyclyl groups include, for example, thiophene, thianthrene, furan, pyran, isobenzofuran, chromene, xanthene, phenoxathiin, pyrrole, imidazole, pyrazole, isothiazole, isoxazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, pyrimidine, phenanthroline, phenazine, phenarsazine, phenothiazine, furazan, phenoxazine, pyrrolidine, o
  • the heterocyclic ring can be substituted at one or more positions with such substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphate, phosphonate, phosphinate, carbonyl, carboxyl, silyl, sulfamoyl, sulfinyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, —CF 3 , —CN, and the like.
  • substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino
  • carbonyl is art-recognized and includes such moieties as can be represented by the formula:
  • X′ is a bond or represents an oxygen or a sulfur
  • R 15 represents a hydrogen, an alkyl, an alkenyl, —(CH 2 ) m —R 10 or a pharmaceutically acceptable salt
  • R 16 represents a hydrogen, an alkyl, an alkenyl or —(CH 2 ) m —R 10 , where m and R 10 are as defined above.
  • X′ is an oxygen and R 15 or R 16 is not hydrogen
  • the formula represents an “ester.”
  • X′ is an oxygen
  • R 15 is as defined above, the moiety is referred to herein as a carboxyl group, and particularly when R 15 is a hydrogen, the formula represents a “carboxylic acid”.
  • X′ is an oxygen, and R 16 is a hydrogen
  • the formula represents a “formate.”
  • the formula represents a “thiocarbonyl” group.
  • X′ is a sulfur and R 15 or R 16 is not hydrogen
  • the formula represents a “thioester” group.
  • X′ is a sulfur and R 15 is a hydrogen
  • the formula represents a “thiocarboxylic acid” group.
  • X′ is a sulfur and R 16 is a hydrogen
  • the formula represents a “thioformate” group.
  • X′ is a bond, and R 15 is not hydrogen
  • the above formula represents a “ketone” group.
  • X′ is a bond, and R 15 is a hydrogen
  • the above formula represents an “aldehyde” group.
  • the term “substituted” is contemplated to include all permissible substituents of organic compounds.
  • the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds.
  • Illustrative substituents include, for example, those described herein above.
  • the permissible substituents can be one or more and the same or different for appropriate organic compounds.
  • the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms.
  • substitution or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc.
  • nitro means —NO 2 ;
  • halogen designates —F, —Cl, —Br, or —I;
  • sulfhydryl means —SH;
  • hydroxyl means —OH;
  • sulfonyl means —SO 2 —;
  • azido means —N 3 ;
  • cyano means —CN;
  • isocyanato means —NCO;
  • thiocyanato means —SCN;
  • isothiocyanato means —NCS; and the term “cyanato” means —OCN.
  • R 15 is as defined above.
  • sulfonamide is art recognized and includes a moiety that can be represented by the formula:
  • R 54 is an electron pair, hydrogen, alkyl, cycloalkyl, or aryl.
  • sulfoxido or “sulfinyl”, as used herein, refers to a moiety that can be represented by the formula:
  • R 17 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aralkyl, or aryl.
  • urea is art-recognized and may be represented by the general formula
  • each R 18 independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R 18 taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • each expression e.g., alkyl, m, n, etc., when it occurs more than once in any structure, is intended to be independent of its definition elsewhere in the same structure.
  • substituted refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds.
  • the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds.
  • the permissible substituents can be one or more and the same or different for appropriate organic compounds.
  • the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms.
  • Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety
  • the substituents on substituted alkyls are selected from C 1-6 alkyl, C 3-6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted,” references to chemical moieties herein are understood to include substituted variants. For example, reference to an “aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to a compound of Formula I:
  • the invention relates to any one of the aforementioned compounds, wherein A is
  • the invention relates to any one of the aforementioned compounds, wherein A is
  • the invention relates to any one of the aforementioned compounds, wherein B is alkylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-(heterocyclyl)-alkylene-. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -(heterocyclyl)-alkylene-. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -cycloalkylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-O—.
  • the invention relates to any one of the aforementioned compounds, wherein B is -cycloalkylene-O—. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-O-alkylene-. In some embodiments, -alkylene-O-alkylene- is -methylene-O-propylene, -ethylene-O-ethylene, or -propylene-O-methylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is selected from the group consisting of:
  • q is 0, 1, 2, or 3; and p is 0, 1, or 2.
  • B is
  • B is
  • q is 0. In some embodiments, q is 1. In some embodiments, q is 2. In some embodiments, q is 3. In some embodiments, p is 0. In some embodiments, p is 1. In some embodiments, p is 2.
  • the invention relates to any one of the aforementioned compounds, wherein R 1 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is alkyl. In certain embodiments, R 1 is methyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is alkoxy. In some embodiments, alkoxy is methoxy, ethoxy, iso-propyloxy, iso-butyloxy, or tert-butyloxy.
  • the invention relates to any one of the aforementioned compounds, wherein R 1 is CF 3 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is OH. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is alkylene-OH. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is NO 2 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is —N(H)R a . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 1 is NH 2 .
  • At least one instance of R 1 is alkyl, halide, OMe, OH, alkylene-OH, or NH 2 . In some embodiments, at least one instance of R 1 is OMe. In some embodiments, all instances of R 1 are H.
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein R 2 is
  • the invention relates to any one of the aforementioned compounds, wherein n is 0. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 1. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 4.
  • the invention relates to any one of the aforementioned compounds, wherein m is 0. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 1. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 3.
  • the invention relates to any one of the aforementioned compounds, wherein R 3 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is CN. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is CF 3 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is C(H)F 2 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is C(F)H 2 .
  • the invention relates to any one of the aforementioned compounds, wherein R 3 is alkyl.
  • alkyl is methyl, ethyl, iso-propyl, or tert-butyl.
  • the invention relates to any one of the aforementioned compounds, wherein R 3 is cycloalkyl.
  • cycloalkyl is cyclopropyl, cyclobutyl, cylcopentyl, or cyclohexyl.
  • the invention relates to any one of the aforementioned compounds, wherein R 3 is -alkylene-alkoxy.
  • the invention relates to any one of the aforementioned compounds, wherein R 3 is aryl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is hydroxyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 3 is H, halide, Me, OMe, or Ph.
  • the invention relates to any one of the aforementioned compounds, wherein R 4 is alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is —C(F 2 )CH 3 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is heterocycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is -alkylene-cycloalkyl.
  • the invention relates to any one of the aforementioned compounds, wherein R 4 is —O— alkylene-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is —O-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is —O-alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is -alkylene-O-alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is -alkylene-O-cycloalkyl.
  • the invention relates to any one of the aforementioned compounds, wherein R 4 is -alkylene-O-alkylene-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 4 is selected from -alkylene-cycloalkyl, —O— alkylene-cycloalkyl; -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl. In some embodiments, alkylene R 4 is methylene or ethylene.
  • the invention relates to any one of the aforementioned compounds, R 4 is selected from
  • the invention relates to any one of the aforementioned compounds, R 4 is selected from optionally substituted
  • the invention relates to any one of the aforementioned compounds, R 4 is
  • the invention relates to any one of the aforementioned compounds, R 4 is
  • the invention relates to any one of the aforementioned compounds, R 4 is
  • the invention relates to any one of the aforementioned compounds, R 4 is
  • the invention relates to any one of the aforementioned compounds, wherein R 4 is selected from
  • the invention relates to any one of the aforementioned compounds, wherein R 5 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is F. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is CN. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is CF 3 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is C(H)F 2 .
  • the invention relates to any one of the aforementioned compounds, wherein R 5 is C(F)H 2 . In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is alkyl. In some embodiments, alkyl is methyl, ethyl, iso-propyl, or tert-butyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is cycloalkyl. In some embodiments, cycloalkyl is cyclopropyl, cyclobutyl, cylcopentyl, or cyclohexyl.
  • the invention relates to any one of the aforementioned compounds, wherein R 5 is -alkylene-alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is aryl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is hydroxyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R 5 is H, halide, Me, OMe, or Ph.
  • the invention relates to any one of the aforementioned compounds, R a is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, R a is (C 1 -C 6 )alkyl. In some embodiments, (C 1 -C 6 )alkyl is methyl, ethyl, n-propyl, i-propyl, n-butyl, i-butyl, or t-butyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, R a is —(C 1 -C 6 )alkylene-O—(C 1 -C 6 )alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, R a is —(C 1 -C 6 )alkylene-O—C(O)O(C 1 -C 6 )alkyl;
  • the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is R. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is S. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is a mixture of R and S.
  • the invention relates to any one of the aforementioned compounds, wherein the compound is a pharmaceutically acceptable salt.
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound of formula:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound of formula:
  • the invention relates to a compound of formula:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound of formula:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a compound selected from the group consisting of:
  • the invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising any one of the aforementioned compounds and a pharmaceutically acceptable carrier.
  • Patients including but not limited to humans, can be treated by administering to the patient an effective amount of the active compound or a pharmaceutically acceptable prodrug or salt thereof in the presence of a pharmaceutically acceptable carrier or diluent.
  • the active materials can be administered by any appropriate route, for example, orally, parenterally, intravenously, intradermally, subcutaneously, or topically, in liquid or solid form.
  • the concentration of active compound in the drug composition will depend on absorption, inactivation and excretion rates of the drug as well as other factors known to those of skill in the art. It is to be noted that dosage values will also vary with the severity of the condition to be alleviated. It is to be further understood that for any particular subject, specific dosage regimens should be adjusted over time according to the individual need and the professional judgment of the person administering or supervising the administration of the compositions, and that the concentration ranges set forth herein are exemplary only and are not intended to limit the scope or practice of the claimed composition.
  • the active ingredient can be administered at once, or can be divided into a number of smaller doses to be administered at varying intervals of time.
  • the mode of administration of the active compound is oral.
  • Oral compositions will generally include an inert diluent or an edible carrier. They can be enclosed in gelatin capsules or compressed into tablets.
  • the active compound can be incorporated with excipients and used in the form of tablets, troches or capsules. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition.
  • the tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel or corn starch; a lubricant such as magnesium stearate or Sterotes; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring.
  • a binder such as microcrystalline cellulose, gum tragacanth or gelatin
  • an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel or corn starch
  • a lubricant such as magnesium stearate or Sterotes
  • a glidant such as colloidal silicon dioxide
  • a sweetening agent such
  • the compound can be administered as a component of an elixir, suspension, syrup, wafer, chewing gum or the like.
  • a syrup can contain, in addition to the active compound(s), sucrose or sweetener as a sweetening agent and certain preservatives, dyes and colorings and flavors.
  • the compound or a pharmaceutically acceptable prodrug or salts thereof can also be mixed with other active materials that do not impair the desired action, or with materials that supplement the desired action, such as antibiotics, antifungals, anti-inflammatories or other antivirals, including but not limited to nucleoside compounds.
  • Solutions or suspensions used for parenteral, intradermal, subcutaneous, or topical application can include the following components: a sterile diluent such as water for injection, saline solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents, such as ethylenediaminetetraacetic acid; buffers, such as acetates, citrates or phosphates, and agents for the adjustment of tonicity, such as sodium chloride or dextrose.
  • the parental preparation can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic.
  • carriers include physiological saline and phosphate buffered saline (PBS).
  • PBS phosphate buffered saline
  • the active compounds are prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including but not limited to implants and microencapsulated delivery systems.
  • Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters and polylactic acid.
  • enterically coated compounds can be used to protect cleavage by stomach acid. Methods for preparation of such formulations will be apparent to those skilled in the art. Suitable materials can also be obtained commercially.
  • Liposomal suspensions are also preferred as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Pat. No. 4,522,811 (incorporated by reference).
  • liposome formulations can be prepared by dissolving appropriate lipid(s) (such as stearoyl phosphatidyl ethanolamine, stearoyl phosphatidyl choline, arachadoyl phosphatidyl choline, and cholesterol) in an inorganic solvent that is then evaporated, leaving behind a thin film of dried lipid on the surface of the container. An aqueous solution of the active compound is then introduced into the container. The container is then swirled by hand to free lipid material from the sides of the container and to disperse lipid aggregates, thereby forming the liposomal suspension.
  • appropriate lipid(s) such as stearoyl phosphatidyl ethanolamine, stearoyl phosphatidyl choline
  • the invention relates to a method of treating a disease or a condition selected from the group consisting of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease, radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, and cardiac fibrosis comprising the step of: administering to a subject in need thereof a therapeutically effective amount of any one of the aforementioned compounds.
  • the invention relates to any one of the aforementioned methods, wherein the disease or condition is a solid tumor (sarcomas, carcinomas, and lymphomas).
  • solid tumors sarcomas, carcinomas, and lymphomas.
  • Exemplary tumors that may be treated in accordance with the invention include e.g., Ewing's sarcoma, rhabdomyosarcoma, osteosarcoma, myelosarcoma, chondrosarcoma, liposarcoma, leiomyosarcoma, soft tissue sarcoma, non-small cell lung cancer, small cell lung cancer, bronchus cancer, prostate cancer, breast cancer, pancreatic cancer, gastrointestinal cancer, colon cancer, rectum cancer, colon carcinoma, colorectal adenoma, thyroid cancer, liver cancer, intrahepatic bile duct cancer, hepatocellular cancer, adrenal gland cancer, stomach cancer, gastric cancer, glioma (e.g., adult, childhood brain stem
  • the invention relates to any one of the aforementioned methods, wherein the disease is disease or condition is a hematological tumor.
  • exemplary homatological tumors that may be treated in accordance with the invention include e.g., acute lymphocytic leukemia, acute myelogenous leukemia, chronic lymphocytic leukemia, chronic myelogenous leukemia, Hodgkin lymphoma, non-Hodgkin lymphoma, and multiple myeloma.
  • the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of idiopathic pulmonary fibrosis, systemic sclerosis associated interstitial lung disease, myositis associated interstitial lung disease, systemic lupus erythematosus associated interstitial lung disease, rheumatoid arthritis, and associated interstitial lung disease.
  • the disease or condition is selected from the group consisting of idiopathic pulmonary fibrosis, systemic sclerosis associated interstitial lung disease, myositis associated interstitial lung disease, systemic lupus erythematosus associated interstitial lung disease, rheumatoid arthritis, and associated interstitial lung disease.
  • the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of diabetic nephropathy, focal segmental glomerulosclerosis, and chronic kidney disease.
  • the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of nonalcoholic steatohepatitis, primary biliary cholangitis, and primary sclerosing cholangitis.
  • the invention relates to any one of the aforementioned methods, wherein the subject is a mammal. In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the subject is human.
  • q 0, 1, 2, or 3;
  • p 0, 1, or 2.
  • R 1 and R 2 represents appropriate substituents; L represents an appropriate linker, and X represents an appropriate halogen, such as Br, Cl or I, or another leaving group such as mesylate or tosylate.
  • Alkene intermediates may be cross-coupled to 2-halo naphthyridines or tetrahydronaphthyridines by the following procedure.
  • Naphthyridines may also be made from methyl ketones by the following procedure.
  • a mixture of methyl ketone (1 equiv.), 2-aminonicotinaldehyde (1-2 equiv.) and secondary amine such as pyrrolidine or L-proline (1-2 equiv.) in DMF or EtOH (1-10 mL/mmol) was stirred at 70-100° C. for 2-10 hours.
  • Solvent was removed in vacuo, and the residue was purified by silica gel column to give the desired naphthyridine product.
  • Naphthyridines may be reduced to tetrahydronaphthyridines by the following procedure.
  • a mixture of an appropriate naphthyridine (1 equiv.) and Pd/C (5-20 weight percent Pd, 0.05 to 0.2 equiv.) in ethyl acetate or another appropriate solvent (2-10 mL/mmol) was stirred under H 2 balloon at room temperature to 50° C. for 2-20 hours. The reaction was filtered and concentrated in vacuo to give the desired tetrahydronaphthyridine product.
  • Boc-protected amine (1 equiv.) was treated with HCl (4-100 equiv.) in 1,4-dioxane (1-50 mL/mmol amine) at room temperature to 50° C. for 1-4 hours.
  • the reaction was concentrated in vacuo, and the amine product was used crude or after purification by silica gel column.
  • the amine could be used crude as a dihydrochloride salt or converted to the free base by dissolving in an appropriate solvent and washing with aqueous NaHCO 3 .
  • the ester may be saponified under basic conditions.
  • the ester (1 equiv.) was treated with LiOH—H 2 O (3-5 equiv.) in MeOH (3-10 mL/mmol ester) and water (3-10 mL/mmol ester) at room temperature to 50° C. for 1-16 hours.
  • the reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired carboxylic acid product.
  • the ester may be saponified under acidic conditions.
  • the ester (1 equiv.) was treated with 4 N HCl (4-100 equiv.) in 1,4-dioxane (1-25 mL/mmol ester) at room temperature to 50° C. for 1-16 hours.
  • the reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired carboxylic acid product.
  • a Petasis reaction can be used to prepare certain aryl analogs: A mixture of amine (1 equiv.) aryl boronic acid or aryl boronate ester (1-1.5 equiv.) and 2-oxoacetic acid (1.5-2 equiv.) in MeCN or DMF (2-10 mL/mmole amine) was stirred at 50-80° C. for 2-16 hours. The reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired amino acetic acid.
  • Prep HPLC A column: XBridge C18, 21.2*250 mm, 10 ⁇ m; mobile phase: A water (10 mM ammonium hydrogen carbonate), B CH 3 CN; gradient elution as in text; flow rate: 20 mL/min.
  • Prep HPLC B column: XBridge C18, 21.2*250 mm, 10 ⁇ m; mobile phase: A water (10 mM formic acid), B CH 3 CN; gradient elution as in text; flow rate: 20 mL/min.
  • Prep HPLC C column: XBridge OBD C18, 19*100 mm, 5 ⁇ m; mobile phase: A water, B CH 3 CN; gradient elution as in text; flow rate: 20 mL/min.
  • Racemic products were separated to individual enantiomers by chiral Prep SFC using an SFC-80 (Thar, Waters) instrument, detection wavelength 214 nm:
  • Chiral SFC A column: (R,R)-Whelk-O1, 4.6*100 mm, 5 ⁇ m (Decial), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC B column: AD 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC C column: AS 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC D column: OD 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC E column: Cellulose-SC 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC F column: OZ 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC G column: IC 4.6*100 mm, 5 ⁇ m (Daicel), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC H column: (S,S)-Whelk-O1, 4.6*100 mm, 5 ⁇ m (Decial), column temperature: 40° C., mobile phase: CO 2 /methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC K column: OZ-H 4.6*250 mm, 5 ⁇ m (SHIMADZU), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC L column: chiral PAK IG 4.6*250 mm, 5 ⁇ m (SHIMADZU), column temperature: 35° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC M column: EnantioPak OJ 4.6*250 mm, 5 ⁇ m (Decial), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Step 1 tert-butyl (R)-3-(4-(2-methyl-1,3-dioxolan-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Step 3 (R)-tert-butyl 3-(4-(1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Step 4 (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 3 (R)-tert-butyl 3-(4-(4-chloro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Step 4 (R)-tert-butyl 3-(4-(4-methoxy-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Step 5 (R)-5-methoxy-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 3 ethyl 4-(2-methyl-1,3-dioxolan-2-yl)butanoate
  • Step 5 (S)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pent-1-enyl)pyrrolidine-1-carboxylate
  • Step 7 (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)pyrrolidine-1-carboxylate
  • Step 8 (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 2 (R)-tert-butyl 3-(3-(2-methyl-1,3-dioxolan-2-yl)propoxy)pyrrolidine-1-carboxylate
  • Step 4 (R)-tert-butyl 3-(3-(1,8-naphthyridin-2-yl)propoxy)pyrrolidine-1-carboxylate
  • Step 5 (R)-7-(3-(pyrrolidin-3-yloxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 2 (R)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Step 4 (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Step 5 (R)-tert-butyl 3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Step 6 (R)-7-(5-(pyrrolidin-3-yloxy)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 1 tert-butyl 3-(4-(benzyloxy)butyl)-3-hydroxypyrrolidine-1-carboxylate
  • Step 2 tert-butyl 3-(4-(benzyloxy)butyl)-3-fluoropyrrolidine-1-carboxylate
  • Step 4 tert-butyl 3-fluoro-3-(4-iodobutyl)pyrrolidine-1-carboxylate
  • Step 5 tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)-3-fluoropyrrolidine-1-carboxylate
  • Step 6 7-(5-(3-fluoropyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Step 2 tert-butyl (R)-3-((5-oxopentyl)oxy)pyrrolidine-1-carboxylate
  • Step 3 tert-butyl (3R)-3-((5-hydroxyhept-6-en-1-yl)oxy)pyrrolidine-1-carboxylate
  • Step 4 tert-butyl (R)-3-((7-(2-chloropyridin-3-yl)-5-oxoheptyl)oxy)pyrrolidine-1-carboxylate
  • Step 5 tert-butyl (R)-3-((5-(((R)-tert-butylsulfinyl)imino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate
  • Step 6 tert-butyl (3R)-3-((5-(((R)-tert-butylsulfinyl)amino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate
  • Step 7 tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • PDA Photodiode Array
  • Step 8 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A dihydrochloride
  • Step 9 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer B dihydrochloride
  • Example 1 Preparation of 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 1-E1 and 1-E2)
  • Step 1 ethyl 2-(2-cyclopropylphenyl)acetate
  • Step 2 ethyl 2-bromo-2-(2-cyclopropylphenyl)acetate
  • Step 3 ethyl 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 4 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 1-E1 and 1-E2)
  • Step 3 2-(2-cyclopropoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 2-E1 and 2-E2)
  • Step 2 ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate
  • Step 3 ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(methylsulfonyloxy)acetate
  • Step 4 ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate
  • Step 2 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 3-E1 and 3-E2)
  • 2-cyclopropyl-5-fluoroaniline (1.8 g, 11.9 mmol) was added to a solution of para-toluene sulfonic acid monohydrate (6.8 g, 35.8 mmol) in acetonitrile (60 mL). The reaction was stirred for 10 minutes at room temperature and then cooled to 10° C. A solution of sodium nitrite (2.0 g, 29.0 mmol) and potassium iodide (4.0 g, 24.1 mmol) in water (20 mL) was added dropwise over 30 minutes.
  • Step 4 2-(2-cyclopropyl-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 4-E1 and 4-E2)
  • Step 1 2-(2-cyclopropylphenyl)-2-((R)-3-(3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)pyrrolidin-1-yl)acetic acid (compounds 5-E1 and 5-E2)
  • Step 3 tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)acetate
  • Step 4 tert-butyl 2-bromo-2-(2,6-dicyclopropylpyridin-3-yl)acetate
  • Step 5 tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 6 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 6-E1 and 6-E2)
  • Example 7 Preparation of 2-(2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 7-E1 and 7-E2)
  • Step 3 2-(2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 7-E1 and 7-E2)
  • Example 8 Preparation of 2-(2-(tert-butoxymethyl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 8)
  • Step 3 2-(2-(tert-butoxymethyl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 8)
  • Step 1 ethyl 2-chloro-2-(2-cyclopropylpyridin-3-yl)acetate
  • Step 2 ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate
  • Step 3 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 9-E1 and 9-E2)
  • Step 1 ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 2 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 10)
  • Example 11 Preparation of 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 11-E1 and 11-E2)
  • Step 2 ethyl 2-(2-cyclobutylpyridin-3-yl)-2-hydroxyacetate
  • Step 3 ethyl 2-chloro-2-(2-cyclobutylpyridin-3-yl)acetate
  • Step 4 ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 5 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 11-E1 and 11-E2)
  • Step 4 tert-butyl 2-bromo-2-(3-(2-methoxypropan-2-yl)isochroman-5-yl)acetate
  • Step 5 methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate
  • Step 6 Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compound 12)
  • Example 13 Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compounds 13-E1 and 13-E2)
  • Step 2 methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)pyridin-3-yl)acetate
  • Step 4 methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate
  • Step 5 methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate
  • Step 6 Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compounds 13-E1 and 13-E2)
  • Example 14 Preparation of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 14-E1 and 14-E2)
  • Step 1 sodium (2-cyclopropylpyridin-3-yl)(hydroxy)methanesulfonate
  • Step 2 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetonitrile
  • Step 3 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetamide
  • Step 4 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 14-E1 and 14-E2)
  • Example 15 Preparation of 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (compounds 15-E1 and 15-E2)
  • Step 1 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (compounds 15-E1 and 15-E2)
  • Example 16 Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetic acid (compounds 16-E1 and 16-E2)
  • Step 1 methyl 2-(2-(furan-2-yl)phenyl) acetate
  • Step 3 methyl 2-bromo-2-(2-(tetrahydrofuran-2-yl)phenyl) acetate
  • Step 4 methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetate
  • Step 5 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetic acid (compounds 16-E1 and 16-E2)
  • Step 1 methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)phenyl)acetate
  • Step 3 methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Step 4 methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Step 5 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetic acid (compound 17)
  • Example 18 Preparation of 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 18-E1 and 18-E2)
  • Step 2 methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)-5-fluorophenyl)acetate
  • Step 3 methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Step 4 methyl 2-bromo-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Step 5 methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 6 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 18-E1 and 18-E2)
  • Example 19 Preparation of 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 19-E1, 19-E2, 19-E3 and 19-E4)
  • Step 4 methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate
  • Step 5 methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Step 6 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 19-E1, 19-E2, 19-E3 and 19-E4)
  • Example 20 Preparation of 2-(2-cyclopropoxy-5-fluorophenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Compounds 20-E1 and 20-E2)
  • Step 3 2-(2-cyclopropoxy-5-fluorophenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Compounds 20-E1 and 20-E2)
  • Example 21 Preparation of 2-(2-cyclobutylpyridin-3-yl)-2-((3R)-3-(4-(1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 21-B-E1, 21-B-E2 and 21-A)
  • Step 1 ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((R)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B
  • Step 2 2-(2-cyclobutylpyridin-3-yl)-2-((3R)-3-(4-(1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (compounds 21-B-E1 and 21-B-E2)
  • Step 3 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((S)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer A (compound 21-A)
  • Example 22 Preparation of 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 92-A-E1, 92-A-E2, 92-B-E1 and 92-B-E2)
  • Step 2 Methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (Stereoisomer B)
  • Step 3 Methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (stereoisomer B)
  • Step 4 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 92-B-E1 and 92-B-E2)
  • Step 5 2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 92-A-E1 and 92-A-E2)
  • Example 23 Preparation of 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 93-A-E1, 93-A-E2, 93-B-E1 and 93-B-E2)
  • Step 2 methyl 2-(5-fluoro-2-(furan-2-yl)phenyl)acetate
  • Step 3 methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate
  • Step 5 Methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A
  • Step 6 2-(5-fluoro-2-((S)-tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (Compounds 93-A-E1 and 93-A-E2)
  • Step 8 methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B
  • Step 9 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (Compounds 93-B-E1 and 93-B-E2)
  • Example 24 Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetic acid (compounds 94-E1 and 94-E2)
  • Step 2 (R)-tert-butyl 3-((3-(1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate
  • Step 3 (R)-tert-butyl 3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate
  • Step 4 (R)-7-(3-(pyrrolidin-3-ylmethoxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Step 5 methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetate
  • Step 6 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetic acid (Compounds 94-E1 and 94-E2)
  • Example 25 Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetic acid (compounds 95-E1 and 95-E2)
  • Step 1 (S)-tert-butyl 3-(2-(3-methoxy-3-oxoprop-1-enyloxy)ethyl)pyrrolidine-1-carboxylate
  • Step 2 (S)-tert-butyl 3-(2-(3-methoxy-3-oxopropoxy)ethyl)pyrrolidine-1-carboxylate

Abstract

Disclosed are small molecule inhibitors of αvβ6 integrin, and methods of using them to treat a number of diseases and conditions.

Description

    RELATED APPLICATIONS
  • This application claims the benefit of priority to U.S. Provisional Patent Application No. 62/724,423, filed Aug. 29, 2018; and U.S. Provisional Patent Application No. 62/859,457, filed Jun. 10, 2019.
    • TECHNICAL FIELD
  • This disclosure relates to novel chemical compounds and methods useful for inhibiting αvβ6 integrin.
    • BACKGROUND
  • The heterodimeric integrin family of receptors modulate cellular shape and cell adhesion to the extracellular matrix in response to extrinsic and intrinsic cues.
  • Integrin signaling controls cell survival, cell cycle progression, cell differentiation, and cell migration.
  • The integrin receptor exclusively can signal a cell bi-directionally, both “inside-out” and “outside-in.” Thus, they mediate cell migration by transmitting forces from the extracellular matrix to the cytoskeleton and regulate cytoskeletal organization to achieve shape changes needed during cell migration. RGD-binding integrins can bind to and activate TGF-β, and have recently been implicated in fibrotic disease.
  • Integrins are expressed on the surface of most of human cells. Their pathology contributes to a diverse set of human diseases, including platelet disorders, atherosclerosis, cancer, osteoporosis, fibrosis, diabetic neuropathy of the kidney, macular degeneration and various autoimmune and chronic inflammation diseases.
  • The role of integrins as drug targets has long been recognized, and a total of six injectable integrin inhibitors have been approved by the Food and Drug Administration for the treatment of various therapeutic indications: inflammatory bowel disease (Entyvio®, Tysabri®), multiple sclerosis (Tysabri®), psoriasis (Raptiva®), and acute coronary syndrome (Reopro®, Aggrastat®, Integrilin®). Of the 24 known integrin heterodimers, as least half have relevance in inflammation, fibrosis, oncology and vascular disease.
  • There exists a need for new classes of integrin inhibitors. There has been a notable absence of therapeutic success with orally bioavailable integrin inhibitors. Accordingly, there remains a need for a small molecule integrin inhibitor of αvβ6 suitable for oral administration. The oral administration route is preferred for small-molecule delivery as it allows a wide range of doses to be administered, allows convenient patient self-administration, is adaptable to varying dosage regimens and needs no special equipment. Therefore, it is important to identify of αvβ6 integrin inhibitor compounds that are not only potent at the intended biological target, but are also demonstrating other characteristics relating to the ability of the compound to be absorbed in the body (e.g, after oral delivery) in a therapeutically effective manner. For example, αvβ6 integrin inhibitor compounds can be selected based on both potency and based on performance in an in vitro permeability assay (e.g., evaluating the ability of compounds to cross a layer of Madin-Darby Canine Kidney (MDCK) cells from the apical to basolateral side (A->B)).
    • SUMMARY
  • Applicants have discovered novel αvβ6 integrin inhibitor compounds and evaluated the possession, performance and utility of representative examples of such compounds, both for biochemical potency (e.g., using the assay of Example 35 to evaluate fluorescence polarization assays of compounds for αvβ6 binding) and in vitro permeability properties (e.g., using the assay of Example 36 to evaluate MDCK permeability).
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00001
      • B is alkylene, -alkylene-(heterocyclyl)-alkylene-, -(heterocyclyl)-alkylene-, -cycloalkylene, -alkylene-O—, -cycloalkylene-O—, or -alkylene-O-alkylene-;
      • C is
  • Figure US20200071322A1-20200305-C00002
      • R1 is independently H, alkyl, halide, alkoxy, CF3, OH, alkylene-OH, NO2, —N(H)R, or NH2;
      • R2 is
  • Figure US20200071322A1-20200305-C00003
      • R3 and R5 are independently selected from H, CN, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is independently 0, 1, 2, 3, or 4;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00004
      • B is selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00005
  • wherein
      • q is 0, 1, 2, or 3; and p is 0, 1, or 2;
      • C is
  • Figure US20200071322A1-20200305-C00006
      • all instances of R1 are H;
      • R2 is
  • Figure US20200071322A1-20200305-C00007
      • R3 is H, halide, Me, OMe, or Ph.
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • R5 is F;
      • Ra is H;
      • n is independently 0 or 1;
      • m is 0 or 1; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00008
      • B is selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00009
  • wherein
      • q is 0, 1, 2, or 3; and p is 0, 1, or 2;
      • C is
  • Figure US20200071322A1-20200305-C00010
      • all instances of R1 are H;
      • R2 is
  • Figure US20200071322A1-20200305-C00011
      • R3 is H, halide, Me, OMe, or Ph;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • R5 is F;
      • Ra is H;
      • n is 0 or 1;
      • m is 0 or 1; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a method of treating a disease or a condition selected from the group consisting of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, and cardiac fibrosis comprising the step of: administering to a subject in need thereof a therapeutically effective amount of any one of the compounds described herein.
    • BRIEF DESCRIPTION OF THE FIGURES
  • FIG. 1 is a table summarizing inhibition of αvβ6 integrin by exemplary compounds, as measured in a fluorescence polarization assay.
  • FIG. 2 is a table summarizing inhibition of αvβ6 integrin by exemplary compounds, as measured in a fluorescence polarization assay.
  • FIG. 3 is a table summarizing permeability properties of exemplary compounds from FIG. 1 measured in a MDCK in vitro assay of Example 36.
  • FIG. 4 is a table summarizing permeability properties of exemplary compounds from FIG. 2 measured in a MDCK in vitro assay of Example 36.
    •  DETAILED DESCRIPTION
  • In certain embodiments, the invention relates to compounds that inhibit αvβ6 integrin. In certain embodiments, the compounds are selective for αvβ6 integrin.
  • The compounds will be useful for the treatment of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease, radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, or cardiac fibrosis.
    • Definitions
  • For convenience, before further description of the present invention, certain terms employed in the specification, examples and appended claims are collected here. These definitions should be read in light of the remainder of the disclosure and understood as by a person of skill in the art. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by a person of ordinary skill in the art.
  • In order for the present invention to be more readily understood, certain terms and phrases are defined below and throughout the specification.
  • The articles “a” and “an” are used herein to refer to one or to more than one (i.e., to at least one) of the grammatical object of the article. By way of example, “an element” means one element or more than one element.
  • The phrase “and/or,” as used herein in the specification and in the claims, should be understood to mean “either or both” of the elements so conjoined, i.e., elements that are conjunctively present in some cases and disjunctively present in other cases. Multiple elements listed with “and/or” should be construed in the same fashion, i.e., “one or more” of the elements so conjoined. Other elements may optionally be present other than the elements specifically identified by the “and/or” clause, whether related or unrelated to those elements specifically identified. Thus, as a non-limiting example, a reference to “A and/or B”, when used in conjunction with open-ended language such as “comprising” can refer, in one embodiment, to A only (optionally including elements other than B); in another embodiment, to B only (optionally including elements other than A); in yet another embodiment, to both A and B (optionally including other elements); etc.
  • As used herein in the specification and in the claims, “or” should be understood to have the same meaning as “and/or” as defined above. For example, when separating items in a list, “or” or “and/or” shall be interpreted as being inclusive, i.e., the inclusion of at least one, but also including more than one, of a number or list of elements, and, optionally, additional unlisted items. Only terms clearly indicated to the contrary, such as “only one of” or “exactly one of,” or, when used in the claims, “consisting of,” will refer to the inclusion of exactly one element of a number or list of elements. In general, the term “or” as used herein shall only be interpreted as indicating exclusive alternatives (i.e., “one or the other but not both”) when preceded by terms of exclusivity, such as “either,” “one of,” “only one of,” or “exactly one of.” “Consisting essentially of,” when used in the claims, shall have its ordinary meaning as used in the field of patent law.
  • As used herein in the specification and in the claims, the phrase “at least one,” in reference to a list of one or more elements, should be understood to mean at least one element selected from any one or more of the elements in the list of elements, but not necessarily including at least one of each and every element specifically listed within the list of elements and not excluding any combinations of elements in the list of elements. This definition also allows that elements may optionally be present other than the elements specifically identified within the list of elements to which the phrase “at least one” refers, whether related or unrelated to those elements specifically identified. Thus, as a non-limiting example, “at least one of A and B” (or, equivalently, “at least one of A or B,” or, equivalently “at least one of A and/or B”) can refer, in one embodiment, to at least one, optionally including more than one, A, with no B present (and optionally including elements other than B); in another embodiment, to at least one, optionally including more than one, B, with no A present (and optionally including elements other than A); in yet another embodiment, to at least one, optionally including more than one, A, and at least one, optionally including more than one, B (and optionally including other elements); etc.
  • It should also be understood that, unless clearly indicated to the contrary, in any methods claimed herein that include more than one step or act, the order of the steps or acts of the method is not necessarily limited to the order in which the steps or acts of the method are recited.
  • In the claims, as well as in the specification above, all transitional phrases such as “comprising,” “including,” “carrying,” “having,” “containing,” “involving,” “holding,” “composed of,” and the like are to be understood to be open-ended, i.e., to mean including but not limited to. Only the transitional phrases “consisting of” and “consisting essentially of” shall be closed or semi-closed transitional phrases, respectively, as set forth in the United States Patent Office Manual of Patent Examining Procedures, Section 2111.03.
  • Certain compounds contained in compositions of the present invention may exist in particular geometric or stereoisomeric forms. In addition, polymers of the present invention may also be optically active. The present invention contemplates all such compounds, including cis- and trans-isomers, R- and S-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention. Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
  • If, for instance, a particular enantiomer of compound of the present invention is desired, it may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers. Alternatively, where the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means well known in the art, and subsequent recovery of the pure enantiomers.
  • Structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds produced by the replacement of a hydrogen with deuterium or tritium, or of a carbon with a 13C- or 14C-enriched carbon are within the scope of this invention.
  • The term “prodrug” as used herein encompasses compounds that, under physiological conditions, are converted into therapeutically active agents. A common method for making a prodrug is to include selected moieties that are hydrolyzed under physiological conditions to reveal the desired molecule. In other embodiments, the prodrug is converted by an enzymatic activity of the host animal.
  • The phrase “pharmaceutically acceptable excipient” or “pharmaceutically acceptable carrier” as used herein means a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting the subject chemical from one organ or portion of the body, to another organ or portion of the body. Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation, not injurious to the patient, and substantially non-pyrogenic. Some examples of materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose, and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose, and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil, and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol, and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other non-toxic compatible substances employed in pharmaceutical formulations. In certain embodiments, pharmaceutical compositions of the present invention are non-pyrogenic, i.e., do not induce significant temperature elevations when administered to a patient.
  • The term “pharmaceutically acceptable salts” refers to the relatively non-toxic, inorganic and organic acid addition salts of the compound(s). These salts can be prepared in situ during the final isolation and purification of the compound(s), or by separately reacting a purified compound(s) in its free base form with a suitable organic or inorganic acid, and isolating the salt thus formed. Representative salts include the hydrobromide, hydrochloride, sulfate, bisulfate, phosphate, nitrate, acetate, valerate, oleate, palmitate, stearate, laurate, benzoate, lactate, phosphate, tosylate, citrate, maleate, fumarate, succinate, tartrate, naphthylate, mesylate, glucoheptonate, lactobionate, and laurylsulphonate salts, and the like. (See, for example, Berge et al. (1977) “Pharmaceutical Salts”, J. Pharm. Sci. 66:1-19.)
  • In other cases, the compounds useful in the methods of the present invention may contain one or more acidic functional groups and, thus, are capable of forming pharmaceutically acceptable salts with pharmaceutically acceptable bases. The term “pharmaceutically acceptable salts” in these instances refers to the relatively non-toxic inorganic and organic base addition salts of a compound(s). These salts can likewise be prepared in situ during the final isolation and purification of the compound(s), or by separately reacting the purified compound(s) in its free acid form with a suitable base, such as the hydroxide, carbonate, or bicarbonate of a pharmaceutically acceptable metal cation, with ammonia, or with a pharmaceutically acceptable organic primary, secondary, or tertiary amine. Representative alkali or alkaline earth salts include the lithium, sodium, potassium, calcium, magnesium, and aluminum salts, and the like. Representative organic amines useful for the formation of base addition salts include ethylamine, diethylamine, ethylenediamine, ethanolamine, diethanolamine, piperazine, and the like (see, for example, Berge et al., supra).
  • A “therapeutically effective amount” (or “effective amount”) of a compound with respect to use in treatment, refers to an amount of the compound in a preparation which, when administered as part of a desired dosage regimen (to a mammal, preferably a human) alleviates a symptom, ameliorates a condition, or slows the onset of disease conditions according to clinically acceptable standards for the disorder or condition to be treated or the cosmetic purpose, e.g., at a reasonable benefit/risk ratio applicable to any medical treatment.
  • The term “prophylactic or therapeutic” treatment is art-recognized and includes administration to the host of one or more of the subject compositions. If it is administered prior to clinical manifestation of the unwanted condition (e.g., disease or other unwanted state of the host animal) then the treatment is prophylactic, (i.e., it protects the host against developing the unwanted condition), whereas if it is administered after manifestation of the unwanted condition, the treatment is therapeutic, (i.e., it is intended to diminish, ameliorate, or stabilize the existing unwanted condition or side effects thereof).
  • The term “patient” refers to a mammal in need of a particular treatment. In certain embodiments, a patient is a primate, canine, feline, or equine. In certain embodiments, a patient is a human.
  • An aliphatic chain comprises the classes of alkyl, alkenyl and alkynyl defined below. A straight aliphatic chain is limited to unbranched carbon chain moieties. As used herein, the term “aliphatic group” refers to a straight chain, branched-chain, or cyclic aliphatic hydrocarbon group and includes saturated and unsaturated aliphatic groups, such as an alkyl group, an alkenyl group, or an alkynyl group.
  • “Alkyl” refers to a fully saturated cyclic or acyclic, branched or unbranched carbon chain moiety having the number of carbon atoms specified, or up to 30 carbon atoms if no specification is made. For example, alkyl of 1 to 8 carbon atoms refers to moieties such as methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, and octyl, and those moieties which are positional isomers of these moieties. Alkyl of 10 to 30 carbon atoms includes decyl, undecyl, dodecyl, tridecyl, tetradecyl, pentadecyl, hexadecyl, heptadecyl, octadecyl, nonadecyl, eicosyl, heneicosyl, docosyl, tricosyl and tetracosyl. In certain embodiments, a straight chain or branched chain alkyl has 30 or fewer carbon atoms in its backbone (e.g., C1-C30 for straight chains, C3-C30 for branched chains), and more preferably 20 or fewer. Alkyl groups may be substituted or unsubstituted.
  • As used herein, the term “alkylene” refers to an alkyl group having the specified number of carbons, for example from 2 to 12 carbon atoms, that contains two points of attachment to the rest of the compound on its longest carbon chain. Non-limiting examples of alkylene groups include methylene —(CH2)—, ethylene —(CH2CH2)—, n-propylene —(CH2CH2CH2)—, isopropylene —(CH2CH(CH3))—, and the like. Alkylene groups can be cyclic or acyclic, branched or unbranched carbon chain moiety, and may be optionally substituted with one or more substituents.
  • “Cycloalkyl” means mono- or bicyclic or bridged or spirocyclic, or polycyclic saturated carbocyclic rings, each having from 3 to 12 carbon atoms. Likewise, preferred cycloalkyls have from 3-10 carbon atoms in their ring structure, and more preferably have 3-6 carbons in the ring structure. Cycloalkyl groups may be substituted or unsubstituted.
  • Unless the number of carbons is otherwise specified, “lower alkyl,” as used herein, means an alkyl group, as defined above, but having from one to ten carbons, more preferably from one to six carbon atoms in its backbone structure such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, and tert-butyl. Likewise, “lower alkenyl” and “lower alkynyl” have similar chain lengths. Throughout the application, preferred alkyl groups are lower alkyls. In certain embodiments, a substituent designated herein as alkyl is a lower alkyl.
  • “Alkenyl” refers to any cyclic or acyclic, branched or unbranched unsaturated carbon chain moiety having the number of carbon atoms specified, or up to 26 carbon atoms if no limitation on the number of carbon atoms is specified; and having one or more double bonds in the moiety. Alkenyl of 6 to 26 carbon atoms is exemplified by hexenyl, heptenyl, octenyl, nonenyl, decenyl, undecenyl, dodenyl, tridecenyl, tetradecenyl, pentadecenyl, hexadecenyl, heptadecenyl, octadecenyl, nonadecenyl, eicosenyl, heneicosoenyl, docosenyl, tricosenyl, and tetracosenyl, in their various isomeric forms, where the unsaturated bond(s) can be located anywhere in the moiety and can have either the (Z) or the (E) configuration about the double bond(s).
  • “Alkynyl” refers to hydrocarbyl moieties of the scope of alkenyl, but having one or more triple bonds in the moiety.
  • The term “alkylthio” refers to an alkyl group, as defined above, having a sulfur moiety attached thereto. In certain embodiments, the “alkylthio” moiety is represented by one of —(S)-alkyl, —(S)-alkenyl, —(S)-alkynyl, and —(S)—(CH2)m—R1, wherein m and R1 are defined below. Representative alkylthio groups include methylthio, ethylthio, and the like. The terms “alkoxyl” or “alkoxy” as used herein refers to an alkyl group, as defined below, having an oxygen moiety attached thereto. Representative alkoxyl groups include methoxy, ethoxy, propoxy, tert-butoxy, and the like. An “ether” is two hydrocarbons covalently linked by an oxygen. Accordingly, the substituent of an alkyl that renders that alkyl an ether is or resembles an alkoxyl, such as can be represented by one of —O-alkyl, —O-alkenyl, —O— alkynyl, —O—(CH2)m—R10, where m and R10 are described below.
  • The terms “amine” and “amino” are art-recognized and refer to both unsubstituted and substituted amines, e.g., a moiety that can be represented by the formulae:
  • Figure US20200071322A1-20200305-C00012
  • wherein R11, R12 and R13 each independently represent a hydrogen, an alkyl, an alkenyl, —(CH2)m—R10, or R11 and R12 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure; R10 represents an alkenyl, aryl, cycloalkyl, a cycloalkenyl, a heterocyclyl, or a polycyclyl; and m is zero or an integer in the range of 1 to 8. In certain embodiments, only one of R11 or R12 can be a carbonyl, e.g., R11, R12, and the nitrogen together do not form an imide. In even more certain embodiments, R11 and R12 (and optionally R13) each independently represent a hydrogen, an alkyl, an alkenyl, or —(CH2)m— R10. Thus, the term “alkylamine” as used herein means an amine group, as defined above, having a substituted or unsubstituted alkyl attached thereto, i.e., at least one of R11 and R12 is an alkyl group. In certain embodiments, an amino group or an alkylamine is basic, meaning it has a conjugate acid with a pKa>7.00, i.e., the protonated forms of these functional groups have pKas relative to water above about 7.00.
  • The term “amide”, as used herein, refers to a group
  • Figure US20200071322A1-20200305-C00013
  • wherein each R14 independently represent a hydrogen or hydrocarbyl group, or two R14 are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • The term “aryl” as used herein includes 3- to 12-membered substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon (i.e., carbocyclic aryl) or where one or more atoms are heteroatoms (i.e., heteroaryl). Preferably, aryl groups include 5- to 12-membered rings, more preferably 6- to 10-membered rings The term “aryl” also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Carboycyclic aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like. Heteroaryl groups include substituted or unsubstituted aromatic 3- to 12-membered ring structures, more preferably 5- to 12-membered rings, more preferably 5- to 10-membered rings, whose ring structures include one to four heteroatoms. Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, triazole, pyrazole, pyridine, pyrazine, pyridazine and pyrimidine, and the like. Aryl and heteroaryl can be monocyclic, bicyclic, or polycyclic. Each instance of an aryl group may be independently optionally substituted, i.e., unsubstituted (an “unsubstituted aryl”) or substituted (a “substituted aryl”) with one or more substituents; e.g., for instance from 1 to 5 substituents, 1 to 4 substituents, 1 to 3 substituents, 1 to 2 substituents or just 1 substituent. The aromatic ring may be substituted at one or more ring positions with one or more substituents, such as halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, fluoroalkyl (such as trifluromethyl), cyano, or the like. For example, in certain embodiments, the aryl group can be an unsubstituted C5-C12 aryl and in certain embodiments, the aryl group can be a substituted C5-C10 aryl.
  • The term “halo”, “halide”, or “halogen” as used herein means halogen and includes, for example, and without being limited thereto, fluoro, chloro, bromo, iodo and the like, in both radioactive and non-radioactive forms. In a preferred embodiment, halo is selected from the group consisting of fluoro, chloro and bromo.
  • The terms “heterocyclyl” or “heterocyclic group” refer to 3- to 12-membered ring structures, more preferably 5- to 12-membered rings, more preferably 5- to 10-membered rings, whose ring structures include one to four heteroatoms. Heterocycles can be monocyclic, bicyclic, spirocyclic, or polycyclic. Heterocyclyl groups include, for example, thiophene, thianthrene, furan, pyran, isobenzofuran, chromene, xanthene, phenoxathiin, pyrrole, imidazole, pyrazole, isothiazole, isoxazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, pyrimidine, phenanthroline, phenazine, phenarsazine, phenothiazine, furazan, phenoxazine, pyrrolidine, oxolane, thiolane, oxazole, piperidine, piperazine, morpholine, lactones, lactams such as azetidinones and pyrrolidinones, sultams, sultones, and the like. The heterocyclic ring can be substituted at one or more positions with such substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphate, phosphonate, phosphinate, carbonyl, carboxyl, silyl, sulfamoyl, sulfinyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, —CF3, —CN, and the like.
  • The term “carbonyl” is art-recognized and includes such moieties as can be represented by the formula:
  • Figure US20200071322A1-20200305-C00014
  • wherein X′ is a bond or represents an oxygen or a sulfur, and R15 represents a hydrogen, an alkyl, an alkenyl, —(CH2)m—R10 or a pharmaceutically acceptable salt, R16 represents a hydrogen, an alkyl, an alkenyl or —(CH2)m—R10, where m and R10 are as defined above. Where X′ is an oxygen and R15 or R16 is not hydrogen, the formula represents an “ester.” Where X′ is an oxygen, and R15 is as defined above, the moiety is referred to herein as a carboxyl group, and particularly when R15 is a hydrogen, the formula represents a “carboxylic acid”. Where X′ is an oxygen, and R16 is a hydrogen, the formula represents a “formate.” In general, where the oxygen atom of the above formula is replaced by a sulfur, the formula represents a “thiocarbonyl” group. Where X′ is a sulfur and R15 or R16 is not hydrogen, the formula represents a “thioester” group. Where X′ is a sulfur and R15 is a hydrogen, the formula represents a “thiocarboxylic acid” group. Where X′ is a sulfur and R16 is a hydrogen, the formula represents a “thioformate” group. On the other hand, where X′ is a bond, and R15 is not hydrogen, the above formula represents a “ketone” group. Where X′ is a bond, and R15 is a hydrogen, the above formula represents an “aldehyde” group.
  • As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds. Illustrative substituents include, for example, those described herein above. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. This invention is not intended to be limited in any manner by the permissible substituents of organic compounds. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc.
  • As used herein, the term “nitro” means —NO2; the term “halogen” designates —F, —Cl, —Br, or —I; the term “sulfhydryl” means —SH; the term “hydroxyl” means —OH; the term “sulfonyl” means —SO2—; the term “azido” means —N3; the term “cyano” means —CN; the term “isocyanato” means —NCO; the term “thiocyanato” means —SCN; the term “isothiocyanato” means —NCS; and the term “cyanato” means —OCN.
  • The term “sulfamoyl” is art-recognized and includes a moiety that can be represented by the formula:
  • Figure US20200071322A1-20200305-C00015
  • in which R11 and R12 are as defined above.
  • The term “sulfate” is art recognized and includes a moiety that can be represented by the formula:
  • Figure US20200071322A1-20200305-C00016
  • in which R15 is as defined above.
  • The term “sulfonamide” is art recognized and includes a moiety that can be represented by the formula:
  • Figure US20200071322A1-20200305-C00017
  • in which R11 and R16 are as defined above.
  • The term “sulfonate” is art-recognized and includes a moiety that can be represented by the formula:
  • Figure US20200071322A1-20200305-C00018
  • in which R54 is an electron pair, hydrogen, alkyl, cycloalkyl, or aryl.
  • The terms “sulfoxido” or “sulfinyl”, as used herein, refers to a moiety that can be represented by the formula:
  • Figure US20200071322A1-20200305-C00019
  • in which R17 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aralkyl, or aryl.
  • The term “urea” is art-recognized and may be represented by the general formula
  • Figure US20200071322A1-20200305-C00020
  • wherein each R18 independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R18 taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • As used herein, the definition of each expression, e.g., alkyl, m, n, etc., when it occurs more than once in any structure, is intended to be independent of its definition elsewhere in the same structure.
  • The term “substituted” refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety. In preferred embodiments, the substituents on substituted alkyls are selected from C1-6 alkyl, C3-6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted,” references to chemical moieties herein are understood to include substituted variants. For example, reference to an “aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
  • For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 67th Ed., 1986-87, inside cover.
    • Exemplary Compounds of the Invention
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00021
      • B is alkylene, -alkylene-(heterocyclyl)-alkylene-, -(heterocyclyl)-alkylene-, -cycloalkylene, -alkylene-O—, -cycloalkylene-O—, or -alkylene-O-alkylene-;
      • C is
  • Figure US20200071322A1-20200305-C00022
      • R1 is independently H, alkyl, halide, alkoxy, CF3, OH, alkylene-OH, NO2, —N(H)R, or NH2;
      • R2 is
  • Figure US20200071322A1-20200305-C00023
      • R3 and R5 are independently selected from H, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is independently 0, 1, 2, 3, or 4;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00024
      • B is alkylene, -alkylene-(heterocyclyl)-alkylene-, -(heterocyclyl)-alkylene-, -cycloalkylene, -alkylene-O—, -cycloalkylene-O—, or -alkylene-O-alkylene-;
      • C is
  • Figure US20200071322A1-20200305-C00025
      • R1 is H, or alkoxy;
      • R2 is
  • Figure US20200071322A1-20200305-C00026
      • R3 and R5 are independently selected from H, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is independently 0, 1, 2, 3, or 4;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00027
      • B is alkylene, -alkylene-O—, or -alkylene-O-alkylene-;
      • C is
  • Figure US20200071322A1-20200305-C00028
      • R1 is H;
      • R2 is
  • Figure US20200071322A1-20200305-C00029
      • R3 and R5 are independently selected from H, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is independently 0, 1, 2, 3, or 4;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00030
      • B is alkylene, or -alkylene-O—;
      • C is
  • Figure US20200071322A1-20200305-C00031
      • R1 is H;
      • R2 is
  • Figure US20200071322A1-20200305-C00032
      • R5 is independently selected from H, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H;
      • n is 0;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to a compound of Formula I:

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00033
      • B is
  • Figure US20200071322A1-20200305-C00034
  • wherein q is 0, 1, 2, or 3;
      • C is
  • Figure US20200071322A1-20200305-C00035
      • R1 is independently H, alkyl, halide, alkoxy, CF3, OH, alkylene-OH, NO2, —N(H)R, or NH2;
      • R2 is
  • Figure US20200071322A1-20200305-C00036
      • R5 is independently selected from H, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is 0;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein A is
  • Figure US20200071322A1-20200305-C00037
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein A is
  • Figure US20200071322A1-20200305-C00038
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is alkylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-(heterocyclyl)-alkylene-. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -(heterocyclyl)-alkylene-. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -cycloalkylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-O—. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -cycloalkylene-O—. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is -alkylene-O-alkylene-. In some embodiments, -alkylene-O-alkylene- is -methylene-O-propylene, -ethylene-O-ethylene, or -propylene-O-methylene. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein B is selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00039
  • q is 0, 1, 2, or 3; and p is 0, 1, or 2.
  • In some embodiments, B is
  • Figure US20200071322A1-20200305-C00040
  • In some embodiments, B is
  • Figure US20200071322A1-20200305-C00041
  • In some embodiments, q is 0. In some embodiments, q is 1. In some embodiments, q is 2. In some embodiments, q is 3. In some embodiments, p is 0. In some embodiments, p is 1. In some embodiments, p is 2.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is alkyl. In certain embodiments, R1 is methyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is alkoxy. In some embodiments, alkoxy is methoxy, ethoxy, iso-propyloxy, iso-butyloxy, or tert-butyloxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is CF3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is OH. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is alkylene-OH. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is NO2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is —N(H)Ra. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R1 is NH2. In some embodiments, at least one instance of R1 is alkyl, halide, OMe, OH, alkylene-OH, or NH2. In some embodiments, at least one instance of R1 is OMe. In some embodiments, all instances of R1 are H.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00042
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00043
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00044
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00045
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00046
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00047
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R2 is
  • Figure US20200071322A1-20200305-C00048
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 0. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 1. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein n is 4.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 0. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 1. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein m is 3.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is CN. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is CF3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is C(H)F2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is C(F)H2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is alkyl. In some embodiments, alkyl is methyl, ethyl, iso-propyl, or tert-butyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is cycloalkyl. In some embodiments, cycloalkyl is cyclopropyl, cyclobutyl, cylcopentyl, or cyclohexyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is -alkylene-alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is aryl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is hydroxyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R3 is H, halide, Me, OMe, or Ph.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is —C(F2)CH3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is heterocycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is -alkylene-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is —O— alkylene-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is —O-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is —O-alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is -alkylene-O-alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is -alkylene-O-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is -alkylene-O-alkylene-cycloalkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is selected from -alkylene-cycloalkyl, —O— alkylene-cycloalkyl; -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl. In some embodiments, alkylene R4 is methylene or ethylene.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is selected from
  • Figure US20200071322A1-20200305-C00049
    Figure US20200071322A1-20200305-C00050
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is selected from optionally substituted
  • Figure US20200071322A1-20200305-C00051
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is
  • Figure US20200071322A1-20200305-C00052
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is
  • Figure US20200071322A1-20200305-C00053
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is
  • Figure US20200071322A1-20200305-C00054
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, R4 is
  • Figure US20200071322A1-20200305-C00055
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R4 is selected from
  • Figure US20200071322A1-20200305-C00056
    Figure US20200071322A1-20200305-C00057
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is halide. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is F. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is CN. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is CF3. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is C(H)F2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is C(F)H2. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is alkyl. In some embodiments, alkyl is methyl, ethyl, iso-propyl, or tert-butyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is cycloalkyl. In some embodiments, cycloalkyl is cyclopropyl, cyclobutyl, cylcopentyl, or cyclohexyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is -alkylene-alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is aryl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is hydroxyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is alkoxy. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein R5 is H, halide, Me, OMe, or Ph.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, Ra is H. In certain embodiments, the invention relates to any one of the aforementioned compounds, Ra is (C1-C6)alkyl. In some embodiments, (C1-C6)alkyl is methyl, ethyl, n-propyl, i-propyl, n-butyl, i-butyl, or t-butyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, Ra is —(C1-C6)alkylene-O—(C1-C6)alkyl. In certain embodiments, the invention relates to any one of the aforementioned compounds, Ra is —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is R. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is S. In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the absolute configuration at any stereocenter is a mixture of R and S.
  • In certain embodiments, the invention relates to any one of the aforementioned compounds, wherein the compound is a pharmaceutically acceptable salt.
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00058
    Figure US20200071322A1-20200305-C00059
    Figure US20200071322A1-20200305-C00060
    Figure US20200071322A1-20200305-C00061
    Figure US20200071322A1-20200305-C00062
    Figure US20200071322A1-20200305-C00063
    Figure US20200071322A1-20200305-C00064
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00065
    Figure US20200071322A1-20200305-C00066
    Figure US20200071322A1-20200305-C00067
    Figure US20200071322A1-20200305-C00068
    Figure US20200071322A1-20200305-C00069
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00070
    Figure US20200071322A1-20200305-C00071
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00072
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00073
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00074
    Figure US20200071322A1-20200305-C00075
    Figure US20200071322A1-20200305-C00076
    Figure US20200071322A1-20200305-C00077
    Figure US20200071322A1-20200305-C00078
    Figure US20200071322A1-20200305-C00079
    Figure US20200071322A1-20200305-C00080
    Figure US20200071322A1-20200305-C00081
    Figure US20200071322A1-20200305-C00082
  • In certain embodiments, the invention relates to a compound of formula:
  • Figure US20200071322A1-20200305-C00083
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00084
    Figure US20200071322A1-20200305-C00085
    Figure US20200071322A1-20200305-C00086
    Figure US20200071322A1-20200305-C00087
    Figure US20200071322A1-20200305-C00088
    Figure US20200071322A1-20200305-C00089
    Figure US20200071322A1-20200305-C00090
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00091
    Figure US20200071322A1-20200305-C00092
    Figure US20200071322A1-20200305-C00093
    Figure US20200071322A1-20200305-C00094
    Figure US20200071322A1-20200305-C00095
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00096
    Figure US20200071322A1-20200305-C00097
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00098
  • In certain embodiments, the invention relates to a compound of formula:
  • Figure US20200071322A1-20200305-C00099
  • In certain embodiments, the invention relates to a compound of formula:
  • Figure US20200071322A1-20200305-C00100
    Figure US20200071322A1-20200305-C00101
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00102
  • In certain embodiments, the invention relates to a compound of formula:
  • Figure US20200071322A1-20200305-C00103
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00104
    Figure US20200071322A1-20200305-C00105
    Figure US20200071322A1-20200305-C00106
    Figure US20200071322A1-20200305-C00107
    Figure US20200071322A1-20200305-C00108
    Figure US20200071322A1-20200305-C00109
    Figure US20200071322A1-20200305-C00110
    Figure US20200071322A1-20200305-C00111
    Figure US20200071322A1-20200305-C00112
    Figure US20200071322A1-20200305-C00113
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00114
    Figure US20200071322A1-20200305-C00115
    Figure US20200071322A1-20200305-C00116
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00117
    Figure US20200071322A1-20200305-C00118
    Figure US20200071322A1-20200305-C00119
    Figure US20200071322A1-20200305-C00120
    Figure US20200071322A1-20200305-C00121
    Figure US20200071322A1-20200305-C00122
    Figure US20200071322A1-20200305-C00123
    Figure US20200071322A1-20200305-C00124
    Figure US20200071322A1-20200305-C00125
    Figure US20200071322A1-20200305-C00126
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00127
    Figure US20200071322A1-20200305-C00128
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00129
    Figure US20200071322A1-20200305-C00130
    Figure US20200071322A1-20200305-C00131
    Figure US20200071322A1-20200305-C00132
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00133
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00134
    Figure US20200071322A1-20200305-C00135
    Figure US20200071322A1-20200305-C00136
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00137
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00138
    Figure US20200071322A1-20200305-C00139
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00140
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00141
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00142
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00143
    Figure US20200071322A1-20200305-C00144
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00145
  • In certain embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00146
  • In some embodiments, the invention relates to a compound selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00147
    • Exemplary Pharmaceutical Compositions
  • In certain embodiments, the invention relates to a pharmaceutical composition comprising any one of the aforementioned compounds and a pharmaceutically acceptable carrier.
  • Patients, including but not limited to humans, can be treated by administering to the patient an effective amount of the active compound or a pharmaceutically acceptable prodrug or salt thereof in the presence of a pharmaceutically acceptable carrier or diluent. The active materials can be administered by any appropriate route, for example, orally, parenterally, intravenously, intradermally, subcutaneously, or topically, in liquid or solid form.
  • The concentration of active compound in the drug composition will depend on absorption, inactivation and excretion rates of the drug as well as other factors known to those of skill in the art. It is to be noted that dosage values will also vary with the severity of the condition to be alleviated. It is to be further understood that for any particular subject, specific dosage regimens should be adjusted over time according to the individual need and the professional judgment of the person administering or supervising the administration of the compositions, and that the concentration ranges set forth herein are exemplary only and are not intended to limit the scope or practice of the claimed composition. The active ingredient can be administered at once, or can be divided into a number of smaller doses to be administered at varying intervals of time.
  • In certain embodiments, the mode of administration of the active compound is oral. Oral compositions will generally include an inert diluent or an edible carrier. They can be enclosed in gelatin capsules or compressed into tablets. For the purpose of oral therapeutic administration, the active compound can be incorporated with excipients and used in the form of tablets, troches or capsules. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition.
  • The tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel or corn starch; a lubricant such as magnesium stearate or Sterotes; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring. When the dosage unit form is a capsule, it can contain, in addition to material of the above type, a liquid carrier such as a fatty oil. In addition, unit dosage forms can contain various other materials that modify the physical form of the dosage unit, for example, coatings of sugar, shellac, or other enteric agents.
  • The compound can be administered as a component of an elixir, suspension, syrup, wafer, chewing gum or the like. A syrup can contain, in addition to the active compound(s), sucrose or sweetener as a sweetening agent and certain preservatives, dyes and colorings and flavors.
  • The compound or a pharmaceutically acceptable prodrug or salts thereof can also be mixed with other active materials that do not impair the desired action, or with materials that supplement the desired action, such as antibiotics, antifungals, anti-inflammatories or other antivirals, including but not limited to nucleoside compounds. Solutions or suspensions used for parenteral, intradermal, subcutaneous, or topical application can include the following components: a sterile diluent such as water for injection, saline solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents, such as ethylenediaminetetraacetic acid; buffers, such as acetates, citrates or phosphates, and agents for the adjustment of tonicity, such as sodium chloride or dextrose. The parental preparation can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic.
  • If administered intravenously, carriers include physiological saline and phosphate buffered saline (PBS).
  • In certain embodiments, the active compounds are prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including but not limited to implants and microencapsulated delivery systems.
  • Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters and polylactic acid. For example, enterically coated compounds can be used to protect cleavage by stomach acid. Methods for preparation of such formulations will be apparent to those skilled in the art. Suitable materials can also be obtained commercially.
  • Liposomal suspensions (including but not limited to liposomes targeted to infected cells with monoclonal antibodies to viral antigens) are also preferred as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Pat. No. 4,522,811 (incorporated by reference). For example, liposome formulations can be prepared by dissolving appropriate lipid(s) (such as stearoyl phosphatidyl ethanolamine, stearoyl phosphatidyl choline, arachadoyl phosphatidyl choline, and cholesterol) in an inorganic solvent that is then evaporated, leaving behind a thin film of dried lipid on the surface of the container. An aqueous solution of the active compound is then introduced into the container. The container is then swirled by hand to free lipid material from the sides of the container and to disperse lipid aggregates, thereby forming the liposomal suspension.
    • Exemplary Methods of the Invention
  • In certain embodiments, the invention relates to a method of treating a disease or a condition selected from the group consisting of idiopathic pulmonary fibrosis, diabetic nephropathy, focal segmental glomerulosclerosis, chronic kidney disease, nonalcoholic steatohepatitis, primary biliary cholangitis, primary sclerosing cholangitis, solid tumors, hematological tumors, organ transplant, Alport syndrome, interstitial lung disease, radiation-induced fibrosis, bleomycin-induced fibrosis, asbestos-induced fibrosis, flu-induced fibrosis, coagulation-induced fibrosis, vascular injury-induced fibrosis, aortic stenosis, and cardiac fibrosis comprising the step of: administering to a subject in need thereof a therapeutically effective amount of any one of the aforementioned compounds.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the disease or condition is a solid tumor (sarcomas, carcinomas, and lymphomas). Exemplary tumors that may be treated in accordance with the invention include e.g., Ewing's sarcoma, rhabdomyosarcoma, osteosarcoma, myelosarcoma, chondrosarcoma, liposarcoma, leiomyosarcoma, soft tissue sarcoma, non-small cell lung cancer, small cell lung cancer, bronchus cancer, prostate cancer, breast cancer, pancreatic cancer, gastrointestinal cancer, colon cancer, rectum cancer, colon carcinoma, colorectal adenoma, thyroid cancer, liver cancer, intrahepatic bile duct cancer, hepatocellular cancer, adrenal gland cancer, stomach cancer, gastric cancer, glioma (e.g., adult, childhood brain stem, childhood cerebral astrocytoma, childhood visual pathway and hypothalamic), glioblastoma, endometrial cancer, melanoma, kidney cancer, renal pelvis cancer, urinary bladder cancer, uterine corpus, uterine cervical cancer, vaginal cancer, ovarian cancer, multiple myeloma, esophageal cancer, brain cancer (e.g., brain stem glioma, cerebellar astrocytoma, cerebral astrocytoma/malignant glioma, ependymoma, meduloblastoma, supratentorial primitive neuroectodermal tumors, visual pathway and hypothalamic glioma), lip and oral cavity and pharynx, larynx, small intestine, melanoma, villous colon adenoma, a neoplasia, a neoplasia of epithelial character, lymphomas (e.g., AIDS-related, Burkitt's, cutaneous T-cell, Hodgkin, non-Hodgkin, and primary central nervous system), a mammary carcinoma, basal cell carcinoma, squamous cell carcinoma, actinic keratosis, tumor diseases, including solid tumors, a tumor of the neck or head, polycythemia vera, essential thrombocythemia, myelofibrosis with myeloid metaplasia, Waldenstrom's macroglobulinemia, adrenocortical carcinoma, AIDS-related cancers, childhood cerebellar astrocytoma, childhood cerebellar astrocytoma, basal cell carcinoma, extrahepatic bile duct cancer, malignant fibrous histiocytoma bone cancer, bronchial adenomas/carcinoids, carcinoid tumor, gastrointestinal carcinoid tumor, primary central nervous system, cerebellar astrocytoma, childhood cancers, ependymoma, extracranial germ cell tumor, extragonadal germ cell tumor, extrahepatic bile duct cancer, intraocular melanoma eye cancer, retinoblastoma eye cancer, gallbladder cancer, gastrointestinal carcinoid tumor, germ cell tumors (e.g., extracranial, extragonadal, and ovarian), gestational trophoblastic tumor, hepatocellular cancer, hypopharyngeal cancer, hypothalamic and visual pathway glioma, islet cell carcinoma (endocrine pancreas), laryngeal cancer, malignant fibroushistiocytoma of bone/osteosarcoma, meduloblastoma, mesothelioma, metastatic squamous neck cancer with occult primary, multiple endocrine neoplasia syndrome, multiple myeloma/plasma cell neoplasm, mycosis fungoides, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, neuroblastoma, oral cancer, oropharyngeal cancer, ovarian epithelial cancer, ovarian germ cell tumor, ovarian low malignant potential tumor, islet cell pancreatic cancer, parathyroid cancer, pheochromocytoma, pineoblastoma, pituitary tumor, pleuropulmonary blastoma, ureter transitional cell cancer, retinoblastoma, rhabdomyosarcoma, salivary gland cancer, Sezary syndrome, non-melanoma skin cancer, Merkel cell carcinoma, squamous cell carcinoma, testicular cancer, thymoma, gestational trophoblastic tumor, and Wilms' tumor.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the disease is disease or condition is a hematological tumor. Exemplary homatological tumors that may be treated in accordance with the invention include e.g., acute lymphocytic leukemia, acute myelogenous leukemia, chronic lymphocytic leukemia, chronic myelogenous leukemia, Hodgkin lymphoma, non-Hodgkin lymphoma, and multiple myeloma.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of idiopathic pulmonary fibrosis, systemic sclerosis associated interstitial lung disease, myositis associated interstitial lung disease, systemic lupus erythematosus associated interstitial lung disease, rheumatoid arthritis, and associated interstitial lung disease.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of diabetic nephropathy, focal segmental glomerulosclerosis, and chronic kidney disease.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the disease or condition is selected from the group consisting of nonalcoholic steatohepatitis, primary biliary cholangitis, and primary sclerosing cholangitis.
  • In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the subject is a mammal. In certain embodiments, the invention relates to any one of the aforementioned methods, wherein the subject is human.
    • Additional Numeric Embodiments
    • 1. A compound of formula (I):

  • A-B-C  (I)
  • wherein:
      • A is
  • Figure US20200071322A1-20200305-C00148
      • B is alkylene, -alkylene-(heterocyclyl)-alkylene-, -(heterocyclyl)-alkylene-, -cycloalkylene, -alkylene-O—, -cycloalkylene-O—, or -alkylene-O-alkylene-;
      • C is
  • Figure US20200071322A1-20200305-C00149
      • R1 is independently H, alkyl, halide, alkoxy, CF3, OH, alkylene-OH, NO2, or —N(H)Ra;
      • R2 is
  • Figure US20200071322A1-20200305-C00150
      • R3 and R5 are independently selected from H, —CN, halide, CF3, C(H)F2, C(F)H2, alkyl, cycloalkyl, -alkylene-alkoxy, aryl, hydroxyl, and alkoxy;
      • R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl, —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
      • Ra is H, (C1-C6)alkyl, —(C1-C6)alkylene-O—(C1-C6)alkyl, or —(C1-C6)alkylene-O—C(O)O(C1-C6)alkyl;
      • n is independently 0, 1, 2, 3, or 4;
      • m is 0, 1, 2, or 3; and
      • the absolute configuration at any stereocenter is R, S, or a mixture thereof,
      • or a pharmaceutically acceptable salt thereof.
    • 2. The compound of embodiment 1, wherein B is selected from the group consisting of:
  • Figure US20200071322A1-20200305-C00151
  • q is 0, 1, 2, or 3; and
  • p is 0, 1, or 2.
    • 3. The compound of embodiment 1, wherein B is -alkylene-O-alkylene-.
    • 4. The compound of embodiment 3, wherein -alkylene-O-alkylene- is -methylene-O-propylene, -ethylene-O-ethylene, or -propylene-O-methylene.
    • 5. The compound of anyone of embodiments 1-4, wherein at least one instance of R1 is alkyl, halide, OMe, OH, alkylene-OH, or NH2.
    • 6. The compound of embodiment 5, wherein the at least one instance of R1 is OMe.
    • 7. The compound of anyone of embodiments 1-4, wherein all instances of R1 are H.
    • 8. The compound of any one of embodiments 1-7, wherein R2 is
  • Figure US20200071322A1-20200305-C00152
    • 9. The compound of embodiment 8, wherein n in R2 is 0.
    • 10. The compound of embodiment 8, wherein n in R2 is 1.
    • 11. The compound of any one of embodiments 1-7, wherein R2 is
  • Figure US20200071322A1-20200305-C00153
    • 12. The compound of embodiment 11, wherein m in R2 is 0.
    • 13. The compound of embodiment 11, wherein m in R2 is 1.
    • 14. The compound of embodiment 1, 8, 10, 11, or 13, wherein R5 is F.
    • 15. The compound of embodiment 1, 8, 10, 11, or 13, wherein R5 is CN.
    • 16. The compound of any one of embodiments 1-7, wherein R2 is
  • Figure US20200071322A1-20200305-C00154
    • 17. The compound of any one of embodiments 1-16, wherein cycloalkyl is cyclopropyl, cyclobutyl, cylcopentyl, or cyclohexyl.
    • 18. The compound of any one of embodiments 1-16, wherein alkyl is methyl, ethyl, iso-propyl, or tert-butyl.
    • 19. The compound of any one of embodiments 1-18, wherein R3 is H, halide, Me, OMe, or Ph.
    • 20. The compound of any one of embodiments 1-19, wherein R4 is independently selected from -alkylene-cycloalkyl, —O-alkylene-cycloalkyl; -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl.
    • 21. The compound of embodiment 20, wherein alkylene in R4 is methylene or ethylene.
    • 22. The compound of any one of embodiments 1-19, wherein R4 is selected from
  • Figure US20200071322A1-20200305-C00155
    Figure US20200071322A1-20200305-C00156
    • 23. The compound of any one of embodiments 1-19, wherein R4 is selected from
  • Figure US20200071322A1-20200305-C00157
    Figure US20200071322A1-20200305-C00158
    • 24. The compound of any one of embodiments 1-23, wherein Ra is H.
    EXEMPLIFICATION
  • The invention now being generally described, it will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention.
    • General Schemes and Procedures for the Preparation of Compounds of the Invention
  • The moiety R1 and R2 represents appropriate substituents; L represents an appropriate linker, and X represents an appropriate halogen, such as Br, Cl or I, or another leaving group such as mesylate or tosylate.
  • Figure US20200071322A1-20200305-C00159
  • represents an appropriate optionally substituted pyrrolidine.
  • Figure US20200071322A1-20200305-C00160
  • represents an appropriate optionally substituted tetrahydronaphthyridine.
  • Figure US20200071322A1-20200305-C00161
  • represents an appropriate optionally substituted naphthyridine.
    General Schemes for the Synthesis of αvβ6 Inhibitors
  • Figure US20200071322A1-20200305-C00162
    Figure US20200071322A1-20200305-C00163
    • General Procedures 9-BBN and Suzuki Reactions
  • Figure US20200071322A1-20200305-C00164
  • Alkene intermediates may be cross-coupled to 2-halo naphthyridines or tetrahydronaphthyridines by the following procedure. To a solution of alkene (1 equiv.) in dry THF (2-10 mL/mmol) under Ar was added 9-BBN (0.5M solution in THF, 1-2 equiv.). The reaction was stirred at 40-80° C. for 1-4 hours, then cooled to room temperature. This solution was added to a mixture of 2-halonaphthyridine or Boc-protected 2-halotetrahydronaphthyridine (1-1.5 equiv.), cesium carbonate (2-5 equiv.) and Pd(PPh3)4 or another appropriate Pd/ligand combination (0.05 to 0.1 equiv.) in 1,4-Dioxane (2-10 mL/mmol). The reaction was stirred at 80-100° C. for 12-24 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column to give the alkyl linked naphthyridine product.
    • Ring Annulations
  • Figure US20200071322A1-20200305-C00165
  • Naphthyridines may also be made from methyl ketones by the following procedure. A mixture of methyl ketone (1 equiv.), 2-aminonicotinaldehyde (1-2 equiv.) and secondary amine such as pyrrolidine or L-proline (1-2 equiv.) in DMF or EtOH (1-10 mL/mmol) was stirred at 70-100° C. for 2-10 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column to give the desired naphthyridine product.
    • Naphthyridine Reduction
  • Figure US20200071322A1-20200305-C00166
  • Naphthyridines may be reduced to tetrahydronaphthyridines by the following procedure. A mixture of an appropriate naphthyridine (1 equiv.) and Pd/C (5-20 weight percent Pd, 0.05 to 0.2 equiv.) in ethyl acetate or another appropriate solvent (2-10 mL/mmol) was stirred under H2 balloon at room temperature to 50° C. for 2-20 hours. The reaction was filtered and concentrated in vacuo to give the desired tetrahydronaphthyridine product.
    • Boc Deprotection
  • Figure US20200071322A1-20200305-C00167
  • Boc-protected amine (1 equiv.) was treated with HCl (4-100 equiv.) in 1,4-dioxane (1-50 mL/mmol amine) at room temperature to 50° C. for 1-4 hours. The reaction was concentrated in vacuo, and the amine product was used crude or after purification by silica gel column. The amine could be used crude as a dihydrochloride salt or converted to the free base by dissolving in an appropriate solvent and washing with aqueous NaHCO3.
    • Amine Alkylation:
  • Figure US20200071322A1-20200305-C00168
  • A mixture of amine (1 equiv.), alkylating agent (1-1.5 equiv.) and K2CO3 or N,N-diisopropylethylamine (2-10 equiv.) in MeCN or DMF (3-10 mL/mmole amine) was stirred at room temperature to 80° C. for 4-16 hours. The reaction was concentrated in vacuo, and the residue was purified by silica gel column to give the desired amino acetic acid ester. The amine used may be the free base or a salt such hydrochloride or dihydrochloride. If the reaction is done with a salt of the amine, additional equivalents of base may be needed.
    • Saponification:
  • Figure US20200071322A1-20200305-C00169
  • For certain esters such as R1=Me or ethyl, the ester may be saponified under basic conditions. The ester (1 equiv.) was treated with LiOH—H2O (3-5 equiv.) in MeOH (3-10 mL/mmol ester) and water (3-10 mL/mmol ester) at room temperature to 50° C. for 1-16 hours. The reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired carboxylic acid product.
  • For certain esters such as R1=tert-butyl, the ester may be saponified under acidic conditions. The ester (1 equiv.) was treated with 4 N HCl (4-100 equiv.) in 1,4-dioxane (1-25 mL/mmol ester) at room temperature to 50° C. for 1-16 hours. The reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired carboxylic acid product.
    • Petasis Reaction:
  • Figure US20200071322A1-20200305-C00170
  • As an alternative to the amine alkylation/saponification sequence, a Petasis reaction can be used to prepare certain aryl analogs: A mixture of amine (1 equiv.) aryl boronic acid or aryl boronate ester (1-1.5 equiv.) and 2-oxoacetic acid (1.5-2 equiv.) in MeCN or DMF (2-10 mL/mmole amine) was stirred at 50-80° C. for 2-16 hours. The reaction was concentrated in vacuo, and the residue was purified by prep HPLC to give the desired amino acetic acid.
    • Analytical Methods Prep-HPLC Methods
  • Crude samples were dissolved in MeOH and purified by prep HPLC using a Gilson 215 instrument, detection wavelength 214 nm:
  • Prep HPLC A: column: XBridge C18, 21.2*250 mm, 10 μm; mobile phase: A water (10 mM ammonium hydrogen carbonate), B CH3CN; gradient elution as in text; flow rate: 20 mL/min.
  • Prep HPLC B: column: XBridge C18, 21.2*250 mm, 10 μm; mobile phase: A water (10 mM formic acid), B CH3CN; gradient elution as in text; flow rate: 20 mL/min.
  • Prep HPLC C: column: XBridge OBD C18, 19*100 mm, 5 μm; mobile phase: A water, B CH3CN; gradient elution as in text; flow rate: 20 mL/min.
    • Prep Chiral SFC Methods
  • Racemic products were separated to individual enantiomers by chiral Prep SFC using an SFC-80 (Thar, Waters) instrument, detection wavelength 214 nm:
  • Prep chiral SFC A: column: (R,R)-Whelk-O1, 20*250 mm, 5 μm (Decial), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC B: column: AD 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC C: column: AS 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC D: column: OD 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC E: column: Cellulose-SC 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC F: column: OZ 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC G: column: IC 20*250 mm, 10 μm (Daicel), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
  • Prep chiral SFC H: column: (S,S)-Whelk-O1, 20*250 mm, 5 μm (Decial), column temperature: 35° C., mobile phase: CO2/methanol (0.2% methanol ammonia)=60/40, flow rate: 80 g/min, back pressure: 100 bar.
    • Analytical Chiral SFC Methods
  • Chiral products were analyzed by chiral SFC using an SFC-80 (Thar, Waters) instrument, detection wavelength 214 nm:
  • Chiral SFC A: column: (R,R)-Whelk-O1, 4.6*100 mm, 5 μm (Decial), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC B: column: AD 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC C: column: AS 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC D: column: OD 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC E: column: Cellulose-SC 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC F: column: OZ 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC G: column: IC 4.6*100 mm, 5 μm (Daicel), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC H: column: (S,S)-Whelk-O1, 4.6*100 mm, 5 μm (Decial), column temperature: 40° C., mobile phase: CO2/methanol (0.2% methanol ammonia), isocratic elution as in text, flow rate: 4 g/min, back pressure: 120 bar.
  • Chiral SFC I: column: IC 4.6*250 mm, 5 μm (SHIMADZU), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC J: column: (S,S)-Whelk-O1 4.6*250 mm, 5 μm (SHIMADZU), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC K: column: OZ-H 4.6*250 mm, 5 μm (SHIMADZU), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC L: column: chiral PAK IG 4.6*250 mm, 5 μm (SHIMADZU), column temperature: 35° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
  • Chiral SFC M: column: EnantioPak OJ 4.6*250 mm, 5 μm (Decial), column temperature: 40° C., mobile phase: n-Hexane (0.1% DEA):EtOH (0.1% DEA), isocratic elution as in text, flow rate: 1 mL/min.
    • Synthesis of Intermediates
  • The following intermediates were prepared according to the procedures below for use in synthesizing examples:
    • Preparation of (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: tert-butyl (R)-3-(4-(2-methyl-1,3-dioxolan-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00171
  • A mixture of (R)-tert-butyl 3-hydroxypyrrolidine-1-carboxylate (1.09 g, 5.41 mmol), 2-(4-bromobutyl)-2-methyl-1,3-dioxolane (1.2 g, 5.41 mmol) and sodium hydride (260 mg, 10.82 mmol) in DMF (5 mL) was stirred at 100° C. for 6 h. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product (R)-tert-butyl 3-(4-(2-methyl-1,3-dioxolan-2-yl)butoxy)pyrrolidine-1-carboxylate as a colorless oil (380 mg). Yield 21% (ESI 330.2 (M+H)+).
    • Step 2: (R)-tert-butyl3-(5-oxohexyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00172
  • (R)-tert-butyl3-(4-(2-methyl-1,3-dioxolan-2-yl)butoxy)pyrrolidine-1-carboxylate (1.3 g, 3.95 mmol) was treated with a solution of HCl/dioxane (4.0 M, 10 mL) at room temperature for 2 hours. The solvent was removed in vacuo, and the residue was diluted with acetone (10 mL) and H2O (1 mL). Potassium carbonate was added to adjust the pH to 8-9, followed by Boc2O (1.24 g, 5.69 mmol). The reaction was stirred at room temperature for 3, then filtered and concentrated under vacuum. The residue was purified by silica gel column (pet ether: EtOAc 15:1) to give the desired product (R)-tert-butyl3-(5-oxohexyloxy)pyrrolidine-1-carboxylate as a colorless oil (820 mg). Yield 73% (ESI 186 (M−100)+, 230 (M−56)+).
    • Step 3: (R)-tert-butyl 3-(4-(1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00173
  • A mixture of (R)-tert-butyl3-(5-oxohexyloxy)pyrrolidine-1-carboxylate (820 mg, 2.88 mmol), 2-aminonicotinaldehyde (456 mg, 3.77 mmol) and pyrrolidine (265 mg, 3.77 mmol) in DMF (5 mL) was stirred at 85° C. for 4 h. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH 15:1) to give the desired product (R)-tert-butyl 3-(4-(1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate as a colorless oil (750 mg). Yield 70% (ESI 372.2 (M+H)+).
    • Step 4: (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00174
  • A mixture of (R)-tert-butyl 3-(4-(1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (750 mg, 2.02 mmol), Pd/C (10%, 500 mg) in EtOAc (10 mL) was stirred at 60° C. for 6 hours under hydrogen. The reaction was filtered and concentrated in vacuo. The residue was treated with a solution of HCl/dioxane (4.0 M, 4 mL) at room temperate for 2 hours, and the solvent was removed in vacuo to give the desired product (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a white solid (600 mg). Yield 96% (ESI 276.2 (M+H)+).
    • Preparation of (R)-5-methoxy-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: (R)-tert-butyl 3-(4-bromobutoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00175
  • To a solution of tert-butyl (R)-3-hydroxypyrrolidine-1-carboxylate (500 mg, 2.67 mmol) in n-Heptane (10 mL) was added sodium hydroxide 50% solution in water (5 mL, 31.2 mmol), tetrabutylammonium bromide (43.0 mg, 0.13 mmol) and 1,4-dibromobutane (1.595 mL, 13.35 mmol). The mixture was stirred at 80° C. for 2 hours, then cooled to room temperature, diluted with water (10 mL) and extracted with diethyl ether (3×10 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc=4:1) to give the desired product (R)-tert-butyl 3-(4-bromobutoxy)pyrrolidine-1-carboxylate as a colorless oil (686 mg). Yield 80% (ESI 314 (M+H-Boc)+).
    • Step 2: (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00176
  • To a solution of tert-butyl (R)-3-(4-bromobutoxy)pyrrolidine-1-carboxylate (512 mg, 1.58 mmol) in THF (10 mL) at 0° C. was added t-BuOK (446 mg, 3.97 mmol). The reaction was stirred at room temperature for 1 hour, then diluted with water (20 mL) and extracted with diethyl ether (3×20 mL). The combined organic layers were dried over sodium sulfate, filtered and concentrated in vacuo to give the desired product (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate as a colorless oil (355 mg). Yield 90% (ESI 186 (M+H-Boc)+).
    • Step 3: (R)-tert-butyl 3-(4-(4-chloro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00177
  • To a solution of tert-butyl (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate (486 mg, 1.8 mmol) in THF (dry, 2 mL) under Ar was added 9-BBN (0.5 M solution in THF, 7.2 mL, 3.6 mmol). The reaction was stirred at 50° C. for 2 hours, then cooled to room temperature. This solution was added to a mixture of 2,4-dichloro-1,8-naphthyridine (360 mg, 1.8 mmol), cesium carbonate (1730 mg, 5.4 mmol) and Pd(PPh3)4 (208 mg, 0.18 mmol) in 1,4-dioxane (7 mL). The reaction was stirred at 90° C. for 1.5 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 1:1 to 1:10) to give the desired product (R)-tert-butyl 3-(4-(4-chloro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate as a yellow oil (300 mg). Yield 41% (ESI 406 (M+H)+).
    • Step 4: (R)-tert-butyl 3-(4-(4-methoxy-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00178
  • To a solution of (R)-tert-butyl 3-(4-(4-chloro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (76 mg, 0.13 mmol) in MeOH (5 mL) was added NaOMe (45 mg, 0.26 mmol). The reaction was stirred under reflux overnight, then concentrated in vacuo, diluted with ethyl acetate (30 mL), washed with water (2×20 mL), dried over MgSO4, filtered and concentrated in vacuo to give the desired product (R)-tert-butyl 3-(4-(4-methoxy-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate as a colorless oil (60 mg). Yield 80% (ESI 402 (M+H)+).
    • Step 5: (R)-5-methoxy-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00179
  • A mixture of (R)-tert-butyl 3-(4-(4-methoxy-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (60 mg, 0.15 mmol) and Pd/C (10%, 30 mg) in EtOAc (10 mL) was stirred under balloon hydrogen at 30° C. for 17 hours. The mixture was filtered and concentrated in vacuo. The residue was treated with 4M HCl in dioxane (3 mL, 12 mmol) at room temperature for 2 hours. Solvent was removed in vacuo to give the desired product (R)-5-methoxy-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a colorless oil (45 mg). Yield 88% (ESI 306 (M+H)+).
    • Preparation of (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: (R)-tert-butyl 3-(iodomethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00180
  • A solution of PPh3 (5.11 g, 19.5 mmol) and 1H-imidazole (1.33 g, 19.5 mmol) in DCM (50 mL) was cooled to 0° C., and then slowly treated with I2 (4.95 g, 19.5 mmol). After stirred at 0° C. for 30 mins, a solution of (R)-tert-butyl 3-(hydroxymethyl)pyrrolidine-1-carboxylate in DCM (10 mL) was added and the reaction was stirred at room temperature overnight. The reaction was diluted with water (50 mL), extracted with DCM (30 mL*3). The combined organic layer was dried over Na2SO4, filtered and removed in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product (R)-tert-butyl 3-(iodomethyl)pyrrolidine-1-carboxylate as a colorless oil (3.7 g). Yield 80%. (ESI 256 (M+H−56)+).
    • Step 2: (R)-((1-(tert-butoxycarbonyl)pyrrolidin-3-yl)methyl)triphenylphosphonium
  • Figure US20200071322A1-20200305-C00181
  • A solution of (R)-tert-butyl 3-(iodomethyl)pyrrolidine-1-carboxylate (3.7 g, 12 mmol) and PPh3 (4.1 g, 15.5 mmol) in DMF (50 mL) was stirred at room temperature overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the crude product. Diethyl ether (30 mL) was added to the crude product and stirred at r.t for 30 mins, filtered. The filter cake was dried under vacuum to give the desired product (R)-((1-(tert-butoxycarbonyl)pyrrolidin-3-yl)methyl)triphenylphosphonium as a white solid (5.6 g). Yield 84%. (ESI N/A).
    • Step 3: ethyl 4-(2-methyl-1,3-dioxolan-2-yl)butanoate
  • Figure US20200071322A1-20200305-C00182
  • A solution of ethyl 5-oxohexanoate (2 g, 13.9 mmol), ethylene glycol (2.6 g, 42 mmol) and p-Toluene sulfonic acid (478 mg, 2.78 mmol) in toluene (50 mL) was stirred under reflux to remove water by Dean-stark trap for 6 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product ethyl 4-(2-methyl-1,3-dioxolan-2-yl)butanoate as a colourless oil (1.4 g, 50% yield). (ESI 203 (M+H)+).
    • Step 4: 4-(2-methyl-1,3-dioxolan-2-yl)butanal
  • Figure US20200071322A1-20200305-C00183
  • To a solution of ethyl 4-(2-methyl-1,3-dioxolan-2-yl)butanoate (500 mg, 2.48 mmol) in DCM (10 mL) at -78° C. under Ar, was added DIBAL-H (1 M, 3.7 mL, 3.7 mmol) slowly. The reaction was stirred at −78° C. for 30 mins, then 20 mL of water was added, warmed to r.t, extracted with DCM (20 mL*3). The combined organic layer was dried over Na2SO4, filtered and concentrated under vacuum. The residue was purified by silica gel column (pet ether: EtOAc 2:1) to give the desired product 4-(2-methyl-1,3-dioxolan-2-yl)butanal as a colorless oil (220 mg). Yield 56%. (ESI 159 (M+H)+).
    • Step 5: (S)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pent-1-enyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00184
  • To a solution of (R)-((1-(tert-butoxycarbonyl)pyrrolidin-3-yl)methyl)triphenylphosphonium (2.0 g, 3.6 mmol) in DCM (30 mL) at 0° C. under N2, was added LiHMDS (1 M, 5.4 mL, 5.4 mmol). The mixture was stirred at 0° C. for 30 mins, then 4-(2-methyl-1,3-dioxolan-2-yl)butanal (565 mg, 3.6 mmol) was added. The reaction was stirred at r.t for 4 hours, then MeOH (20 mL) was added. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 3:1) to give the desired product (S)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pent-1-enyl)pyrrolidine-1-carboxylate as a yellow oil (500 mg). Yield 43%. (ESI 226 (M+H−100)+).
    • Step 6: (R)-tert-butyl 3-(6-oxoheptyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00185
  • To a solution of (S)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pent-1-enyl)pyrrolidine-1-carboxylate (500 mg, 1.54 mmol) in EtOAc (20 mL), was added Pd/C (10%, 50 mg) and the mixture was stirred at 40° C. overnight under H2. The reaction was filtered and the filtrate was concentrated in vacuo. The residue was treated with TsOH (264 mg, 1.54 mmol) in acetone (5 mL). The mixture was stirred at r.t for 6 hours, then EtOAc (20 mL) was added, washed with sat. NaHCO3 solution (20 mL) and brine. The organic layer was dried over Na2SO4, filtered and concentrated in vacuo to give the desired product (R)-tert-butyl 3-(6-oxoheptyl)pyrrolidine-1-carboxylate as a yellow oil (200 mg). Yield 46% (ESI 184 (M+H−100)+).
    • Step 7: (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00186
  • To a solution of (R)-tert-butyl 3-(6-oxoheptyl)pyrrolidine-1-carboxylate (300 mg, 1.06 mmol) in EtOH (10 mL), was added 2-aminonicotinaldehyde (155 mg, 1.27 mmol) and pyrrolidine (90 mg, 1.27 mmol). The reaction was heated to reflux overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH=20:1) to give the desired product (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)pyrrolidine-1-carboxylate as a yellow oil (220 mg). Yield 56%. (ESI 370 (M+H)+).
    • Step 8: (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00187
  • To a solution of (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)pyrrolidine-1-carboxylate (220 mg, 0.60 mmol) in EtOAc (10 mL) was added Pd/C (10%, 30 mg). The mixture was stirred at 40° C. under H2 overnight. The reaction was filtered and the filtrate was concentrated in vacuo. The residue was treated with a solution of HCl/dioxane (4.0 M, 5 mL) at room temperate for 2 hours, then the solvent was removed in vacuo to give the desired product (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a yellow oil (160 mg). Yield 86%. (ESI 274 (M+H)+).
    • Preparation of (R)-7-(3-(pyrrolidin-3-yloxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: 2-(3-bromopropyl)-2-methyl-1,3-dioxolane
  • Figure US20200071322A1-20200305-C00188
  • In a flame dried round-bottomed flask equipped with a magnetic stir bar and a Dean-Stark trap under N2, a solution of 5-bromopentan-2-one (2.0 g, 12.12 mmol) in toluene (40 mL) was treated with ethylene glycol (6.93 g, 111.7 mmol) and TsOH (384 mg, 0.22 mmol). The reaction mixture was heated to reflux for 1 h, allowed to cool to room temperature, diluted with saturated aqueous NaHCO3 (60 mL) and extracted with ethyl acetate (100 mL). The organic layer was washed with water (2×100 mL), dried over MgSO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc 4:1) to give the desired product as a colorless oil (1.5 g). Yield 59%.
    • Step 2: (R)-tert-butyl 3-(3-(2-methyl-1,3-dioxolan-2-yl)propoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00189
  • A mixture of (R)-tert-butyl 3-hydroxypyrrolidine-1-carboxylate (894 mg, 4.78 mmol) and NaH (287 mg, 7.18 mmol) in DMF (10 mL) was stirred at 0° C. for 1 hour. A solution of 2-(3-bromopropyl)-2-methyl-1,3-dioxolane (1 g, 4.78 mmol) in DMF (5 mL) was added dropwise at 0° C., and the reaction mixture was stirred at 100° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc 1:1) to give the desired product as a colorless oil (500 mg). Yield 33% (ESI 216 (M+H−100)+).
    • Step 3: (R)-tert-butyl 3-(4-oxopentyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00190
  • A mixture of (R)-tert-butyl 3-(3-(2-methyl-1,3-dioxolan-2-yl)propoxy)pyrrolidine-1-carboxylate (500 mg, 1.59 mmol) and p-toluenesulfonic acid monohydrate (151 mg 0.79 mmol) in acetone (10 mL) and H2O (5 mL) was stirred at room temperature for 4 hours. The reaction was diluted with H2O (10 mL) and extracted with EtOAc (3×10 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo to give the desired product as a colorless oil (380 mg). Yield 88% (ESI 172 (M+H−100)+).
    • Step 4: (R)-tert-butyl 3-(3-(1,8-naphthyridin-2-yl)propoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00191
  • A mixture of (R)-tert-butyl 3-(4-oxopentyloxy)pyrrolidine-1-carboxylate (380 mg, 1.40 mmol), 2-aminonicotinaldehyde (171 mg, 1.40 mmol) and pyrrolidine (99 mg, 1.40 mmol) in ethanol (8 mL) was refluxed overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH 40:1) to give the desired product as a colorless oil (310 mg). Yield 62% (ESI 358 (M+H)+).
    • Step 5: (R)-7-(3-(pyrrolidin-3-yloxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00192
  • A mixture of (R)-tert-butyl 3-(3-(1,8-naphthyridin-2-yl)propoxy)pyrrolidine-1-carboxylate (310 mg, 0.87 mmol) and Pd/C (10%, 30 mg) in EtOAc (30 mL) was stirred under balloon hydrogen at room temperature for 16 hours. The mixture was filtered and concentrated in vacuo. The residue was treated with HCl in 1,4-dioxane (4M, 5 mL) at 25° C. for 2 hours. Solvent was removed in vacuo to give (R)-7-(3-(pyrrolidin-3-yloxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a colorless oil (240 mg). Yield 83% (ESI 262 (M+H)+).
    • Preparation of (R)-7-(5-(pyrrolidin-3-yloxy)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: 2-(5-bromopentyl)-2-methyl-1,3-dioxolane
  • Figure US20200071322A1-20200305-C00193
  • To a solution of 7-bromoheptan-2-one (14 g, 73 mmol) in toluene (150 mL) in a three-necked flask equipped with Dean-Stark trap was added ethane-1,2-diol (15 g, 255 mmol) and p-toluenesulfonic acid (251 mg, 1.46 mmol). The reaction mixture was stirred at reflux for 20 h. The reaction mixture was cooled to room temperature and washed with sat NaHCO3 solution, water and brine. The organic phase was concentrated, and the residue was separated by silica gel column (7% EtOAc in petroleum ether) to give 2-(5-bromopentyl)-2-methyl-1,3-dioxolane (16 g, 92%).
    • Step 2: (R)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00194
  • To a solution of (R)-tert-butyl 3-hydroxypyrrolidine-1-carboxylate (3.5 g, 18.7 mmol) in DMF (25 mL) was added NaH (830 mg, 20.6 mmol) in portions at 0° C. The reaction mixture was stirred at 0° C. for 1 h. 2-(5-bromopentyl)-2-methyl-1,3-dioxolane (4.9 g, 20.6 mmol) was added and the reaction mixture was stirred at 100° C. for 16 h. The reaction mixture was poured into ice water and extracted with EtOAc (150 mL×3). The combined organic phase was washed with brine, dried over Na2SO4. The organic phase was concentrated, and the residue was chromatographed on silica gel (20% EtOAc in pet. Ether) to give the product (R)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pentyloxy)pyrrolidine-1-carboxylate as yellow oil (3.7 g, 57%); (ESI 344.3 (M+H)+).
    • Step 3: (R)-tert-butyl 3-(6-oxoheptyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00195
  • To a solution of (R)-tert-butyl 3-(5-(2-methyl-1,3-dioxolan-2-yl)pentyloxy)pyrrolidine-1-carboxylate (3.7 g, 10.8 mmol) in acetone (70 mL) and water (7 mL) was added p-toluenesulfonic acid (927 mg, 5.4 mmol). The reaction mixture was stirred at room temperature for 16 h. The reaction mixture was neutralized with saturated aqueous NaHCO3 solution and concentrated under reduced pressure. The residue was extracted with EtOAc (100 mL×3). The combined organic phase was washed with brine, dried over Na2SO4 and concentrated to give the product (R)-tert-butyl 3-(6-oxoheptyloxy)pyrrolidine-1-carboxylate as yellow oil (2.99 g, 92%); (ESI 300.1 (M+H)+).
    • Step 4: (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00196
  • To a solution of (R)-tert-butyl 3-(6-oxoheptyloxy)pyrrolidine-1-carboxylate (2.9 g, 9.7 mmol) in EtOH (40 mL) was added 2-aminonicotinaldehyde (1.2 g, 9.7 mmol) and L-proline (558 mg, 4.8 mmol). The reaction mixture was stirred at reflux for 16 h. Then the reaction mixture was concentrated, and the residue was separated by silica gel column (5% MeOH in EtOAc) to give (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate as a yellow solid (2.4 g, 64%); (95% purity, UV=214 nm, ESI 386.0 (M+H)+).
    • Step 5: (R)-tert-butyl 3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00197
  • To a solution of (R)-tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate (2.4 g, 6.2 mmol) in EtOH (30 mL) was added Pd/C (10%, 300 mg). The reaction mixture was degassed and purged with H2 for 3 times and stirred at 45° C. under H2 for 20 h. The reaction mixture was filtered and the filtrate was concentrated to give (R)-tert-butyl 3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate as a yellow oil (2.5 g, 100%); (ESI 390.5 (M+H)+).
    • Step 6: (R)-7-(5-(pyrrolidin-3-yloxy)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00198
  • To a solution of (R)-tert-butyl 3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidine-1-carboxylate (2.4 g, 6.2 mmol) in DCM (10 mL) was added HCl/1,4-dioxane (4 mol/L, 30 mL). The reaction mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated to give (R)-7-(5-(pyrrolidin-3-yloxy)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a yellow oil (2.9 g, 100%); (ESI 290.4 (M−55)+).
    • Preparation of 7-(5-(3-fluoropyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: tert-butyl 3-(4-(benzyloxy)butyl)-3-hydroxypyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00199
  • To a mixture of ((4-bromobutoxy)methyl)benzene (9.45 g, 38.87 mmol) and Mg (1.89 g, 77.74 mmol) in Et2O (20 mL) was added 12 (202 mg, 1.09 mmol). The reaction mixture was stirred at 40° C. for 1 h. After cooled to room temperature, the mixture was added to a solution of tert-butyl 3-oxopyrrolidine-1-carboxylate (2.4 g, 12.96 mmol) in 30 mL of Et2O at 5° C. The reaction was stirred at room temperature overnight, then quenched with aq. NH4Cl (10 mL) and extracted with EtOAc (30 mL×3). The combined organic layer was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc 5:1-2:1) to give the desired product tert-butyl 3-(4-(benzyloxy)butyl)-3-hydroxypyrrolidine-1-carboxylate as a yellow oil (1.7 g). Yield 38% (ESI 294 (M+H−56)+).
    • Step 2: tert-butyl 3-(4-(benzyloxy)butyl)-3-fluoropyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00200
  • A mixture of tert-butyl 3-(4-(benzyloxy)butyl)-3-hydroxypyrrolidine-1-carboxylateas (1.7 g, 4.86 mmol) and BAST (10.76 g, 48.6 mmol) in DCM (30 mL) was stirred at 40° C. for 24 h. The reaction was diluted with MeOH (2 mL), washed with water (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc 20:1-10:1) to give the desired product tert-butyl 3-(4-(benzyloxy)butyl)-3-fluoropyrrolidine-1-carboxylate as a light yellow oil (1.1 g). Yield 64% (ESI 296 (M+H−56)+).
    • Step 3: (tert-butyl 3-fluoro-3-(4-hydroxybutyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00201
  • A mixture of tert-butyl 3-(4-(benzyloxy)butyl)-3-fluoropyrrolidine-1-carboxylate (1.1 g, 3.13 mmol) and Pd/C (5%, 1.1 g) in EtOAc (100 mL) was stirred under hydrogen at 45° C. overnight.
  • The mixture was filtered and concentrated in vacuo to give the desired product tert-butyl 3-fluoro-3-(4-hydroxybutyl)pyrrolidine-1-carboxylate as a light yellow oil (780 mg). Yield 95% (ESI 206 (M+H−56)+).
    • Step 4: tert-butyl 3-fluoro-3-(4-iodobutyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00202
  • To a solution of triphenylphosphine (1.58 g, 6.04 mmol) and imidazole (411 mg, 6.04 mmol) in DCM (40 mL) at 5° C. was added 12 (835 mg, 3.29 mmol). The reaction mixture was stirred at 5° C. for 15 min, and then a solution of (tert-butyl 3-fluoro-3-(4-hydroxybutyl)pyrrolidine-1-carboxylate (780 mg, 2.99 mmol) in DCM (15 mL) was added. The reaction mixture was stirred at 5° C. for 1 h, then concentrated in vacuo at 15° C., and the residue was purified by silica gel column (pet ether:EtOAc 20:1˜10:1) to give the desired product tert-butyl 3-fluoro-3-(4-iodobutyl)pyrrolidine-1-carboxylate as a light yellow oil (700 mg). Yield 63% (ESI 316 (M+H−56)+).
    • Step 5: tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)-3-fluoropyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00203
  • To a solution of (R)-tert-butyl 3-(1,1-difluoro-4-iodobutyl)pyrrolidine-1-carboxylate (700 mg, 1.88 mmol) and 2-methyl-1,8-naphthyridine (407 mg, 2.82 mmol) in THF (12 mL) at 0° C. was added LiHMDS (2.82 mL, 1M, 2.82 mmol). The reaction mixture was stirred at 0° C. for 3 h, then quenched with saturated ammonium chloride solution (6 mL), diluted with water (15 mL) and extracted with EtOAc (30 mL×2). The combined organic layers were dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by prep-TLC to give the desired product tert-butyl 3-(5-(1,8-naphthyridin-2-yl)pentyl)-3-fluoropyrrolidine-1-carboxylate as a light yellow solid (350 mg). Yield 48% (ESI 388 (M+H)+).
    • Step 6: 7-(5-(3-fluoropyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride
  • Figure US20200071322A1-20200305-C00204
  • A mixture of 3-(5-(1,8-naphthyridin-2-yl)pentyl)-3-fluoropyrrolidine-1-carboxylate (200 mg, 0.516 mmol) and Pd/C (5%, 200 mg) in EtOAc (20 mL) under hydrogen was stirred at 45° C. overnight. The reaction mixture was filtered and concentrated in vacuo. To the residue was added 1,4-dioxane (2 mL) and HCl/dioxane (2 mL, 4M) at room temperature. The reaction mixture was stirred at room temperature for 3 h, then concentrated in vacuo to give the desired product 7-(5-(3-fluoropyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride as a light yellow solid (140 mg). Yield 93% (ESI 292 (M+H)+).
    • Preparation of 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride Step 1: Tert-butyl (R)-3-(hex-5-en-1-yloxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00205
  • To a suspension of tert-butyl (R)-3-hydroxypyrrolidine-1-carboxylate (12.8 g, 68.4 mmol), tetrabutylammonium bromide (1.102 g, 3.42 mmol) and 6-bromo-1-hexene (13.71 mL, 103 mmol) in heptane (256 mL) was added sodium hydroxide (128 mL, 68.4 mmol, 50 wt % solution in water). The mixture was vigourously stirred at 80° C. for 2 hours, then cooled to room temperature, diluted with water and extracted with heptane and twice with diethyl ether/heptane. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (600 g silica, 5->14% ethyl acetate in heptane) afforded the desired product tert-butyl (R)-3-(hex-5-en-1-yloxy)pyrrolidine-1-carboxylate (14.93 g). Yield 81%. 1H NMR (400 MHz, Chloroform-d) δ 5.87-5.74 (m, 1H), 5.05-4.91 (m, 2H), 4.04-3.95 (m, 1H), 3.48-3.27 (m, 6H), 2.07 (q, J=7.2 Hz, 2H), 2.02-1.84 (m, 2H), 1.60-1.51 (m, 2H), 1.51-1.38 (m, 11H).
    • Step 2: tert-butyl (R)-3-((5-oxopentyl)oxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00206
  • To a solution of tert-butyl (R)-3-(hex-5-en-1-yloxy)pyrrolidine-1-carboxylate (14.93 g, 55.4 mmol) in THF (420 mL) and water (140 mL) was added sodium periodate (26.1 g, 122 mmol) and osmium tetroxide (1.5 mL, 0.232 mmol, 4% solution in water). After 1 hour, additional sodium periodate (5 g, 23.38 mmol) was added. After 30 minutes, the mixture was diluted with water and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was purified by flash column chromatography (˜600 g silica, 20->50% ethyl acetate in heptane). This afforded the desired product tert-butyl (R)-3-((5-oxopentyl)oxy)pyrrolidine-1-carboxylate (10.97 g). Yield 72%. 1H NMR (400 MHz, Chloroform-d) δ 9.77 (s, 1H), 4.03-3.94 (m, 1H), 3.50-3.27 (m, 6H), 2.47 (t, J=7.2 Hz, 2H), 2.02-1.84 (m, 2H), 1.77-1.65 (m, 2H), 1.65-1.54 (m, 2H), 1.46 (s, 9H).
    • Step 3: tert-butyl (3R)-3-((5-hydroxyhept-6-en-1-yl)oxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00207
  • To a solution of tert-butyl (R)-3-((5-oxopentyl)oxy)pyrrolidine-1-carboxylate (10.97 g, 40.4 mmol) in THF (70 mL) at 0° C. was added dropwise vinylmagnesium bromide (66.4 mL, 46.5 mmol, 0.7 M solution in THF). After 16 hours, the mixture was quenched with aqueous saturated ammonium chloride and extracted with ethyl acetate. The organic layer was washed with brine, dried over sodium sulfate and concentrated, and the residue was purified by flash column chromatography (20->50% EtOAc in heptane) to give the desired product tert-butyl (3R)-3-((5-hydroxyhept-6-en-1-yl)oxy)pyrrolidine-1-carboxylate (7.68 g). Yield 63%. 1H NMR (400 MHz, Chloroform-d) δ 5.93-5.80 (m, 1H), 5.28-5.17 (m, 1H), 5.15-5.06 (m, 1H), 4.17-4.05 (m, 1H), 3.99 (s, 1H), 3.52-3.23 (m, 6H), 2.03-1.83 (m, 2H), 1.65-1.50 (m, 5H), 1.50-1.33 (m, 11H).
    • Step 4: tert-butyl (R)-3-((7-(2-chloropyridin-3-yl)-5-oxoheptyl)oxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00208
  • Tert-butyl (3R)-3-((5-hydroxyhept-6-en-1-yl)oxy)pyrrolidine-1-carboxylate (10.48 g, 35.0 mmol), 2-chloro-3-iodopyridine (4.19 g, 17.50 mmol), tetrabutylammonium chloride (0.486 g, 1.750 mmol) and sodium hydrogencarbonate (3.68 g, 43.8 mmol) were dissolved/suspended under argon in DMF (35 mL), and argon was bubbled through this mixture for 15 minutes. Palladium(II) acetate (0.393 g, 1.750 mmol) was added, and the mixture was heated to 50° C. for 24 hours, then cooled to room temperature, diluted with water and extracted three times with ethyl acetate. The combined organic layers were washed three times with brine, dried over sodium sulfate and concentrated, and the residue was purified by column chromatography (silica, 20->55% EtOAc in heptane) to afford the desired product tert-butyl (R)-3-((7-(2-chloropyridin-3-yl)-5-oxoheptyl)oxy)pyrrolidine-1-carboxylate (3.05 g). Yield 42%. 1H NMR (400 MHz, Chloroform-d) δ 8.25 (dd, J=4.7, 1.9 Hz, 1H), 7.62 (dd, J=7.5, 1.9 Hz, 1H), 7.17 (dd, J=7.5, 4.7 Hz, 1H), 4.04-3.93 (m, 1H), 3.51-3.25 (m, 6H), 2.99 (t, J=7.3 Hz, 2H), 2.79 (t, J=7.3 Hz, 2H), 2.43 (t, J=7.2 Hz, 2H), 2.01-1.83 (m, 2H), 1.72-1.48 (m, 4H), 1.30 (s, 9H).
    • Step 5: tert-butyl (R)-3-((5-(((R)-tert-butylsulfinyl)imino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00209
  • To a solution of (R)-(+)-2-methyl-2-propanesulfinamide (1.799 g, 14.84 mmol) and tert-butyl (R)-3-((7-(2-chloropyridin-3-yl)-5-oxoheptyl)oxy)pyrrolidine-1-carboxylate (3.05 g, 7.42 mmol) in THF (30 mL) was added titanium(IV) ethoxide (7.24 mL, 22.27 mmol). The resulting mixture was heated to 50° C. for 20 hours, then poured out on half-saturated aqueous sodium hydrogencarbonate, stirred for 10 minutes, transferred to 2 centrifuge vials and centrifuged for 5 min at 7800 rpm. The liquids were decanted into a separation funnel. The vials were then filled with ethyl acetate, shaken vigorously and centrifuged again for 5 minutes at 7800 rpm. The liquids were combined in the separation funnel. The layers were separated, and the aqueous phase was extracted once more with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated, and the residue was purified by flash column chromatography (300 g silica, 35-65% EtOAc in heptane) to afford the desired product tert-butyl (R)-3-((5-(((R)-tert-butylsulfinyl)imino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate (3.15 g). Yield 78% (ESI 514/516 (M+H)+). 1H NMR (400 MHz, Chloroform-d) δ 8.27 (dd, J=4.7, 1.9 Hz, 1H), 7.64 (dd, J=62.5, 7.4 Hz, 1H), 7.19 (dd, J=7.5, 4.8 Hz, 1H), 3.99 (s, 1H), 3.54-3.24 (m, 6H), 3.16-2.87 (m, 2H), 2.87-2.60 (m, 2H), 2.60-2.35 (m, 1H), 1.94 (s, 2H), 1.77-1.53 (m, 5H), 1.45 (s, 9H), 1.35-1.11 (m, 9H).
    • Step 6: tert-butyl (3R)-3-((5-(((R)-tert-butylsulfinyl)amino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00210
  • To a solution of tert-butyl (R)-3-((5-(((R)-tert-butylsulfinyl)imino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate (3.15 g, 6.13 mmol) in methanol (20 mL) was added sodium borohydride (0.278 g, 7.35 mmol). After 2 hours, the mixture was quenched with saturated aqueous ammonium chloride and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated, and the residue was purified by flash column chromatography (50->100% EtOAc in heptane) to afford the desired product tert-butyl (3R)-3-((5-(((R)-tert-butylsulfinyl)amino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate (3.05 g). Yield 85%. 1H NMR (400 MHz, Chloroform-d) δ 8.28-8.22 (m, 1H), 7.72-7.51 (m, 1H), 7.22-7.15 (m, 1H), 4.03-3.95 (m, 1H), 3.49-3.22 (m, 7H), 3.16-3.06 (m, 1H), 2.96-2.64 (m, 2H), 2.00-1.83 (m, 4H), 1.80-1.70 (m, 1H), 1.65-1.51 (m, 3H), 1.51-1.37 (m, 11H), 1.25 (s, 9H).
    • Step 7: tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00211
  • To a solution of tert-butyl (3R)-3-((5-(((R)-tert-butylsulfinyl)amino)-7-(2-chloropyridin-3-yl)heptyl)oxy)pyrrolidine-1-carboxylate (3.05 g, 5.20 mmol) in 1,4-dioxane (25 mL) was added Xantphos (0.602 g, 1.040 mmol) and cesium carbonate (3.39 g, 10.40 mmol). The mixture was bubbled through with argon for 15 minutes. Palladium(II) acetate (0.117 g, 0.520 mmol) was added, and the reaction was bubbled through with argon for 1 minute and stirred at 100° C. for 16 hours, then cooled to room temperature, quenched with water and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated, and the residue was purified by flash column chromatography (40->100% EtOAc in heptane) to afford the desired product tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (928 mg). Yield 36% (ESI 480 (M+H)+). The compound was separated by chiral SFC to give stereoisomer A and stereoisomer B. Apparatus: Waters Prep 100 SFC UV directed system; Waters 2998 Photodiode Array (PDA) Detector; Waters 2767 Sample Manager; Masslynx™ Software; FractionLynx™ Application Manager, Acq. Method: Cell-2_f70_10_50_8 mn_SW_120 bar, Loading: 50 mg, Column: Phenomenex Lux Cellulose-2 (250×21.2 mm, 5 μm), Flow: 70 mL/min, Column temp: 35° C.; ABPR: 120 bar; Eluent A: CO2, Eluent B: 20 mM ammonia in methanol, Linear gradient: t=0 min 10% B, t=5 min 50% B, t=7.5 min 50% B, t=8 min 10% B. Injection: Sandwich 100 μl methanol, Detection PDA: 210-320 nm, Collection: Based on PDA TIC.
  • tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate stereoisomer A: 0.58 grams, LC/MS ESI 480 (M+H)+. 1H NMR (400 MHz, Chloroform-d) δ 8.06-7.98 (m, 1H), 7.37-7.29 (m, 1H), 6.73-6.63 (m, 1H), 4.20-4.09 (m, 1H), 4.03-3.93 (m, 1H), 3.50-3.25 (m, 6H), 2.94-2.79 (m, 1H), 2.77-2.65 (m, 1H), 2.20-2.08 (m, 1H), 2.00-1.49 (m, 7H), 1.46 (s, 9H), 1.43-1.27 (m, 2H), 1.21 (s, 9H).
  • tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate stereoisomer B: 0.45 grams, LC/MS ESI 480 (M+H)+. 1H NMR (400 MHz, Chloroform-d) δ 8.20-8.09 (m, 1H), 7.39-7.31 (m, 1H), 6.90-6.80 (m, 1H), 4.25-4.12 (m, 1H), 4.04-3.92 (m, 1H), 3.51-3.24 (m, 6H), 2.87-2.62 (m, 2H), 2.11-1.83 (m, 3H), 1.76-1.49 (m, 6H), 1.46 (s, 9H), 1.40-1.27 (m, 10H).
    • Step 8: 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A dihydrochloride
  • Figure US20200071322A1-20200305-C00212
  • To a solution of tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate stereoisomer A (0.58 g, 1.209 mmol) in methanol (5 mL) was added hydrochloric acid (5 mL, 20.00 mmol, 4N solution in dioxane). The mixture was stirred at room temperature for 3 hours, then concentrated in vacuo and coevaporated with methanol. Diethyl ether was added which started a slow crystallisation of the product. After standing overnight the crystallised material was scratched loose, and the material was triturated with diethyl ether. After a few hours the solids were collected by filtration, rinsed with fresh diethyl ether and dried under vacuum to afford the desired product 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A dihydrochloride (438 mg) as a beige solid. Yield 100%. LC/MS ESI 276 (M−2HCl+H)+. 1H NMR (400 MHz, Methanol-d4) δ 7.75-7.66 (m, 2H), 6.80 (t, J=6.8 Hz, 1H), 4.30-4.23 (m, 1H), 3.67-3.56 (m, 1H), 3.56-3.44 (m, 2H), 3.44-3.33 (m, 3H), 3.25 (dd, J=12.5, 4.2 Hz, 1H), 2.96-2.78 (m, 2H), 2.26-2.16 (m, 1H), 2.13-1.99 (m, 2H), 1.77-1.46 (m, 7H), 1.23-1.12 (m, 1H). Specific Optical Rotation: 33.9° C.=0.5, MeOH, 22.7° C., 589 nm.
    • Step 9: 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer B dihydrochloride
  • Figure US20200071322A1-20200305-C00213
  • To a solution of tert-butyl (3R)-3-(4-(1-((R)-tert-butylsulfinyl)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate stereoisomer B (0.45 g, 0.938 mmol) in methanol (5 mL) was added hydrochloric acid (5 mL, 20.00 mmol, 4N solution in dioxane). The mixture was stirred at room temperature for 3 hours, then concentrated in vacuo and coevaporated with methanol. Diethyl ether was added which started a slow crystallisation of the product. After standing overnight the crystallised material was scratched loose, and the material was triturated with diethyl ether. After a few hours, the solids were collected by filtration, rinsed with fresh diethyl ether and dried under vacuum to afford the desired product 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer B dihydrochloride (289 mg) as a beige solid. Yield 85%. LC/MS ESI 276 (M−2HCl+H)+. 1H NMR (400 MHz, Methanol-d4) δ 7.74-7.66 (m, 2H), 6.80 (t, J=6.8 Hz, 1H), 4.30-4.23 (m, 1H), 3.66-3.57 (m, 1H), 3.57-3.45 (m, 2H), 3.45-3.33 (m, 3H), 3.29-3.21 (m, 1H), 2.96-2.78 (m, 2H), 2.26-2.16 (m, 1H), 2.13-1.97 (m, 2H), 1.76-1.44 (m, 7H). Specific Optical Rotation: −48.3° C.=0.5, MeOH, 22.7° C., 589 nm.
  • The following methods were used to prepare compounds 1-21:
    • Example 1: Preparation of 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 1-E1 and 1-E2) Step 1: ethyl 2-(2-cyclopropylphenyl)acetate
  • Figure US20200071322A1-20200305-C00214
  • A mixture of ethyl 2-(2-bromophenyl)acetate (5.0 g, 20.57 mmol), cyclopropylboronic acid (3.54 g, 41.14 mmol), Pd(OAc)2 (922 mg, 4.12 mmol), tricyclohexylphosphine (1.73 g, 6.17 mmol) and tripotassium phosphate (15.3 g, 72.01 mmol) in toluene (60 mL) and water (7.5 mL) was stirred at 120° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 20:1) to give the desired product ethyl 2-(2-cyclopropylphenyl) acetate as a colorless oil (4.0 g). Yield 95%. 1H NMR (400 MHz, CDCl3) δ7.21-7.18 (m, 4H), 4.18-4.16 (q, 2H), 3.83 (s, 2H), 1.52-1.48 (m, 1H), 1.29-1.18 (t, 3H), 0.94-0.64 (m, 4H).
    • Step 2: ethyl 2-bromo-2-(2-cyclopropylphenyl)acetate
  • Figure US20200071322A1-20200305-C00215
  • To a solution of ethyl 2-(2-cyclopropylphenyl) acetate (1 g, 4.9 mmol) in THF (16 mL) at -78° C. was added lithium diisopropylamide solution 2.0 M in THF/hexanes (6.2 mL, 12.4 mmol) dropwise. The reaction was stirred at −78° C. for 30 min. Then a solution of chlorotrimethylsilane (1.3 g, 12.25 mmol) in THF (5 mL) was added, and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (1.5 g, 12.25 mmol) in THF (10 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL) and concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product ethyl 2-bromo-2-(2-cyclopropylphenyl)acetate as a yellow oil (350 mg). Yield 25%.
    • Step 3: ethyl 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00216
  • A mixture of ethyl 2-bromo-2-(2-cyclopropylphenyl)acetate (350 mg, 1.24 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (341 mg, 1.24 mmol) and K2CO3 (513 mg, 3.72 mmol) in acetonitrile (8 mL) was stirred 60° C. for 16 h. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product ethyl 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a yellow oil (150 mg). Yield 25% (ESI 478 (M+H)+).
    • Step 4: 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 1-E1 and 1-E2)
  • Figure US20200071322A1-20200305-C00217
  • Ethyl 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (150 mg, 0.31 mmol) was treated with LiOH—H2O (52 mg, 1.24 mmol) in MeOH (4 mL) and H2O (1 mL) at 60° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 1 as a white solid (110 mg, 77% yield). The racemic product was separated by Prep chiral SFC A to give diastereomeric products compound 1-E1 (25 mg) and compound 1-E2 (26 mg) as white solids.
  • Compound 1-E1 LC/MS ESI 450.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.60 (d, J=7.6 Hz, 1H), 7.28 (m, 2H), 7.15 (d, J=7.3 Hz, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.31 (s, 1H), 4.21 (s, 1H), 3.72-3.32 (m, 6H), 3.24-3.02 (m, 2H), 2.71 (t, J=6.3 Hz, 2H), 2.54 (t, J=7.5 Hz, 2H), 2.31-1.95 (m, 3H), 1.94-1.79 (m, 2H), 1.77-1.66 (m, 2H), 1.58 (m, 2H), 1.05-0.87 (m, 3H), 0.67-0.38 (m, 1H). Chiral SFC A (45% MeOH): ee 98%, Rt=1.97 min
  • Compound 1-E2 LC/MS ESI 450.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.60 (d, J=7.6 Hz, 1H), 7.28 (m, 2H), 7.15 (d, J=7.3 Hz, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.31 (s, 1H), 4.21 (s, 1H), 3.72-3.32 (m, 6H), 3.24-3.02 (m, 2H), 2.71 (t, J=6.3 Hz, 2H), 2.54 (t, J=7.5 Hz, 2H), 2.31-1.95 (m, 3H), 1.94-1.79 (m, 2H), 1.77-1.66 (m, 2H), 1.58 (m, 2H), 1.05-0.87 (m, 3H), 0.67-0.38 (m, 1H). Chiral SFC A (45% MeOH): ee 98%, Rt=2.59 min
    • Example 2: Preparation of 2-(2-cyclopropoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 2-E1 and 2-E2) Step 1: 1-bromo-2-cyclopropoxybenzene
  • Figure US20200071322A1-20200305-C00218
  • A mixture of 2-bromophenol (2.0 g, 11.6 mmol), bromocyclopropane (4.6 g, 38.1 mmol) and K2CO3 (5.2 g, 38.1 mmol) in dry DMF (10 mL) was sealed in a tube and heated by microwave at 140° C. for 2 hours. The reaction mixture was cooled to room temperature, diluted with water and extracted with diethyl ether (3×100 mL). The combined organic layer was washed with brine and concentrated in vacuo. The residue was purified by silica gel column (eluting with 0-10 percent EtOAc/hexanes) to afford the desired product as colorless oil (400 mg). Yield 17% 1H NMR (400 MHz, CDCL3) δ 7.52 (d, J=7.2 Hz, 1H), 7.30-7.27 (m, 2H), 6.88-6.84 (m, 1H), 3.83-3.80 (m, 1H), 0.90-0.82 (m, 4H).
    • Step 2: 2-cyclopropoxyphenylboronic acid
  • Figure US20200071322A1-20200305-C00219
  • To a solution of 1-bromo-2-cyclopropoxybenzene (800 mg, 3.75 mmol) in THF (20 mL) was added n-BuLi (2.5M, 4.5 mmol) dropwise. The reaction was stirred for 1 h at −78° C. under Ar. A solution of trimethyl borate (779 mg, 7.5 mmol) in THF (5 mL) was added dropwise, and the reaction stirred for another 1 hour at −78° C., then slowly warmed to room temperature and stirred overnight. Aqueous HCl (1N, 20 mL) was added, and the reaction was stirred at room temperature for 30 min, then extracted with DCM (3×20 mL). The combined organic layers were dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc=1:1) to give the desired product as a white solid (400 mg). Yield: 60% (ESI: 178 [M−H]−).
    • Step 3: 2-(2-cyclopropoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 2-E1 and 2-E2)
  • Figure US20200071322A1-20200305-C00220
  • A mixture of 2-cyclopropoxyphenylboronic acid (400 mg, 2.25 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (476 mg, 1.73 mmol) and 2-oxoacetic acid (304 mg 3.45 mmol) in DCM (5 mL) was stirred at room temperature for 8 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 2 as a white solid (205 mg, 26% yield). The racemic product was separated by Prep chiral SFC A to give diastereomeric products compound 2-E1 (110 mg) and compound 2-E2 (79 mg) as white solids.
  • Compound 2-E1 LC/MS ESI 466 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.48 (d, J=7.6 Hz, 1H), 7.41-7.40 (m, 2H), 7.13 (d, J=7.6 Hz, 1H), 7.04-7.00 (m, 1H), 6.38 (d, J=7.6 Hz, 1H), 4.92 (s, 1H), 4.18-4.16 (m, 1H), 3.90-3.85 (m, 1H), 3.56-3.36 (m, 5H), 3.27-3.01 (m, 3H), 2.70 (t, J=6.0 Hz, 2H), 2.56 (t, J=7.2 Hz, 2H), 2.09-1.55 (m, 8H), 0.85-0.70 (m, 4H). Chiral SFC A (40% MeOH): ee 85.4%, Rt=2.39 min
  • Compound 2-E2 LC/MS ESI 466 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.52 (d, J=7.6 Hz, 1H), 7.41-7.40 (m, 2H), 7.13 (d, J=7.2 Hz, 1H), 7.03-6.99 (m, 1H), 6.37 (d, J=7.2 Hz, 1H), 4.86 (s, 1H), 4.15-4.12 (m, 1H), 3.92-3.75 (m, 1H), 3.56-3.36 (m, 5H), 3.27-3.14 (m, 3H), 2.70 (t, J=6.0 Hz, 2H), 2.53 (t, J=7.6 Hz, 2H), 2.20-1.55 (m, 8H), 0.85-0.70 (m, 4H). Chiral SFC A (40% MeOH): ee 95.4%, Rt=3.27 min
    • Example 3: Preparation of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 3-E1 and 3-E2) Step 1: 3-bromo-2-cyclopropylpyridine
  • Figure US20200071322A1-20200305-C00221
  • To a solution of 2,3-dibromopyridine (3 g, 12.8 mmol) and cyclopropylzinc(II) bromide (76 mL, 0.5 M in THF) in THF (30 mL) was added Pd(PPh3)4 (740 mg, 0.64 mmol). The mixture was stirred at 70° C. under N2 for 4 hours, then diluted with water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic layers were dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product 3-bromo-2-cyclopropylpyridine as a yellow oil (1.2 g). Yield 48% (ESI 198 (M+H)+).
    • Step 2: ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate
  • Figure US20200071322A1-20200305-C00222
  • To a solution of EtMgBr (1 M, 3.65 mL, 3.65 mmol) in THF (20 mL) at 0° C. under N2, was added n-BuLi (2.9 mL, 7.3 mmol). The solution was stirred at 0° C. for 30 min, then a solution of 3-bromo-2-cyclopropylpyridine (1.2 g, 6.1 mmol) in THF (5 mL) was added at -10° C. The mixture was stirred at that temperature for 30 min, and ethyl 2-oxoacetate (50% in toluene, 5 g, 24.4 mmol) was added. The reaction was stirred at 0° C. for 2 hours, then quenched with saturated K2CO3 solution (20 mL) and extracted with EtOAc (3×50 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (pet ether: EtOAc 2:1) to give the desired product ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate as a yellow oil (700 mg). Yield 52% (ESI 222 (M+H)+).
    • Step 3: ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(methylsulfonyloxy)acetate
  • Figure US20200071322A1-20200305-C00223
  • To a solution of ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate (300 mg, 1.36 mmol) and triethylamine (411 mg, 4.1 mmol) in DCM (5 mL) at 0° C. was added MsCl (232 mg, 2 mmol). The reaction was stirred at room temperature for 2 hours, then concentrated in vacuo and purified by silica gel column (pet ether: EtOAc 4:1) to get the desired product ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(methylsulfonyloxy)acetate as a yellow oil (190 mg). Yield 47% (ESI 300 (M+H)+).
    • Step 4: ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00224
  • A mixture of (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine hydrochloride (300 mg, 0.87 mmol), ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(methylsulfonyloxy)acetate (286 mg, 0.96 mmol) and diisopropylethylamine (337 mg, 2.6 mmol) in acetonitrile (10 mL) was stirred at 50° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH=0%-20%) to give the desired product as a yellow oil (245 mg). Yield 54% (ESI 477 (M+H)+).
    • Step 2: 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 3-E1 and 3-E2)
  • Figure US20200071322A1-20200305-C00225
  • Ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate (245 mg, 0.51 mmol) was treated with LiOH—H2O (210 mg, 5.0 mmol) in MeOH (4 mL) and H2O (1 mL) at room temperature for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-60% MeCN) to give compound 3 as a white solid (110 mg, 48% yield). The racemic product was separated by Prep chiral SFC H to give diastereomeric products compound 3-E1 (42 mg) and compound 3-E2 (45 mg) as white solids.
  • Compound 3-E1 LC/MS ESI 449 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.39 (t, J=6.1 Hz, 1H), 7.98 (d, J=7.9 Hz, 1H), 7.19-7.10 (m, 2H), 6.35 (d, J=7.3 Hz, 1H), 5.06 (s, 1H), 3.40-3.31 (m, 3H), 3.15-3.08 (m, 2H), 2.84-2.81 (m, 1H), 2.70-2.67 (m, 2H), 2.59-2.56 (m, 1H), 2.55-2.47 (m, 2H), 2.36-2.26 (m, 1H), 2.21-2.13 (m, 1H), 1.90-1.84 (m, 2H), 1.66-1.57 (m, 3H), 1.44-1.26 (m, 7H), 1.08-1.05 (m, 2H), 0.93-0.90 (m, 1H). Chiral SFC H (45% MeOH): ee 92%, Rt=2.11 min
  • Compound 3-E2 LC/MS ESI 449 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.36 (t, J=6.1 Hz, 1H), 8.01 (d, J=7.9 Hz, 1H), 7.20-7.11 (m, 2H), 6.35 (d, J=8 Hz, 1H), 4.91 (s, 1H), 3.51-3.36 (m, 3H), 3.20-2.91 (m, 2H), 2.71-2.29 (m, 7H), 2.14-2.09 (m, 1H), 1.90-1.84 (m, 2H), 1.64-1.57 (m, 3H), 1.433-1.23 (m, 7H), 1.06-1.01 (m, 2H), 0.92-0.88 (m, 1H). Chiral SFC H (45% MeOH): ee 100%, Rt=3.77 min
    • Example 4: Preparation of 2-(2-cyclopropyl-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 4-E1 and 4-E2) Step 1: 2-cyclopropyl-5-fluoroaniline
  • Figure US20200071322A1-20200305-C00226
  • A mixture of 2-bromo-5-fluoroaniline (3.0 g, 15.8 mmol), cyclopropylboronic acid (2.7 g, 31.4 mmol), PCy3 (440 mg, 1.57 mmol), Pd(OAc)2 (352 mg, 1.57 mmol) and K3PO4 (20 g, 94.3 mmol) in toluene (50 mL) and H2O (10 mL) was stirred at 100° C. for 4 hours. The reaction mixture was cooled to room temperature, diluted with H2O (10 mL) and extracted with EtOAc (3×100 mL). The combined organic layer was washed with brine and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 2:1) to afford the desired product as a colorless oil (1.8 g). Yield 75% (ESI: 152[M+H]+).
    • Step 2: 1-cyclopropyl-4-fluoro-2-iodobenzene
  • Figure US20200071322A1-20200305-C00227
  • 2-cyclopropyl-5-fluoroaniline (1.8 g, 11.9 mmol) was added to a solution of para-toluene sulfonic acid monohydrate (6.8 g, 35.8 mmol) in acetonitrile (60 mL). The reaction was stirred for 10 minutes at room temperature and then cooled to 10° C. A solution of sodium nitrite (2.0 g, 29.0 mmol) and potassium iodide (4.0 g, 24.1 mmol) in water (20 mL) was added dropwise over 30 minutes. The reaction mixture was stirred at room temperature for 4 hours, then basified to pH 9-10 with aqueous sodium bicarbonate, then diluted with EtOAc (100 mL) and 10% aqueous sodium metabisulphite (20 mL). The phases were separated, and the aqueous layer was extracted with EtOAc (2×100 mL). Organics were combined, washed with brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to afford the desired product as a colorless oil (1.3 g). Yield 42% (ESI: N/A).
    • Step 3: 2-cyclopropyl-5-fluorophenylboronic acid
  • Figure US20200071322A1-20200305-C00228
  • To a solution of 1-cyclopropyl-4-fluoro-2-iodobenzene (1.3 g, 4.96 mmol) in THF (50 mL) was added n-BuLi (2.5M, 2.2 mL, 5.5 mmol) dropwise. The reaction was stirred for 1 h at −78° C. under Ar. A solution of trimethyl borate (1.0 g, 9.62 mmol) in THF (10 mL) was added dropwise, and the reaction was stirred for another 1 hour at −78° C., then slowly warmed to room temperature and stirred overnight. Aqueous HCl (1N, 20 mL) was added, and the mixture was stirred at room temperature for 30 min, then extracted with DCM (3×20 mL). The combined organic layers were dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc=1:1) to give the desired product as a white solid (500 mg). Yield: 56% (ESI: 179[M−H]−).
    • Step 4: 2-(2-cyclopropyl-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 4-E1 and 4-E2)
  • Figure US20200071322A1-20200305-C00229
  • A mixture of 2-cyclopropyl-5-fluorophenylboronic acid (200 mg, 1.11 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (306 mg, 1.11 mmol) and 2-oxoacetic acid (123 mg 1.66 mmol) in MeCN (5 mL) was stirred at 60° C. for 15 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 4 as a white solid (120 mg, 23% yield). The racemic product was separated by Prep chiral SFC A to give diastereomeric products compound 4-E1 (34 mg) and compound 4-E2 (41 mg) as white solids.
  • Compound 4-E1 LC/MS ESI 468 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.41 (d, J=10.0 Hz, 1H), 7.20-7.01 (m, 3H), 6.38 (d, J=7.2 Hz, 1H), 5.28 (s, 1H), 4.21 (s, 1H), 3.55-3.05 (m, 8H), 2.71 (t, J=6.4 Hz, 2H), 2.55 (t, J=7.6 Hz, 2H), 2.19-2.05 (m, 3H), 1.92-1.55 (m, 6H), 0.95-0.80 (m, 3H), 0.55-0.50 (m, 1H). Chiral SFC A (35% MeOH): ee 100%, Rt=2.69 min
  • Compound 4-E2 LC/MS ESI 468 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.41 (d, J=10.0 Hz, 1H), 7.20-7.01 (m, 3H), 6.38 (d, J=7.2 Hz, 1H), 5.19 (s, 1H), 4.18 (s, 1H), 3.54-3.19 (m, 8H), 2.71 (t, J=6.0 Hz, 2H), 2.59-2.53 (m, 2H), 2.22-2.14 (m, 3H), 1.92-1.55 (m, 6H), 0.98-0.85 (m, 3H), 0.55-0.50 (m, 1H). Chiral SFC A (35% MeOH): ee 97%, Rt=3.26 min
    • Example 5: Preparation of 2-(2-cyclopropylphenyl)-2-((R)-3-(3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)pyrrolidin-1-yl)acetic acid (compounds 5-E1 and 5-E2) Step 1: 2-(2-cyclopropylphenyl)-2-((R)-3-(3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)pyrrolidin-1-yl)acetic acid (compounds 5-E1 and 5-E2)
  • Figure US20200071322A1-20200305-C00230
  • A mixture of 2-cyclopropylphenylboronic acid (102 mg, 0.63 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (140 mg, 0.42 mmol) and 2-oxoacetic acid (47 mg 0.63 mmol) in DCM (5 mL) was stirred at room temperature for 8 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 5 as a white solid (95 mg, 52% yield). The racemic product was separated by Prep chiral SFC H to give diastereomeric products compound 5-E1 (15 mg) and compound 5-E2 (9 mg) as white solids.
  • Compound 5-E1 LC/MS ESI 436.4 (M+H)+1H NMR (400 MHz, MeOD) δ 7.64 (d, J=7.6 Hz, 1H), 7.33-7.12 (m, 4H), 6.36 (d, J=7.2 Hz, 1H), 5.26 (s, 1H), 4.18 (s, 1H), 3.55-3.22 (m, 8H), 2.69 (t, J=6.4 Hz, 2H), 2.60 (t, J=7.2 Hz, 2H), 2.30-2.13 (m, 3H), 1.92-1.84 (m, 4H), 1.08-0.90 (m, 3H), 0.65-0.55 (m, 1H). Chiral SFC H (35% MeOH): ee 98%, Rt=2.74 min
  • Compound 5-E2 LC/MS ESI 436.4 (M+H)+1H NMR (400 MHz, MeOD) δ 7.61 (d, J=7.6 Hz, 1H), 7.32-7.12 (m, 4H), 6.36 (d, J=7.2 Hz, 1H), 5.33 (s, 1H), 4.21 (s, 1H), 3.55-3.09 (m, 8H), 2.70 (t, J=6.4 Hz, 2H), 2.60 (t, J=7.2 Hz, 2H), 2.25-2.00 (m, 3H), 1.93-1.84 (m, 4H), 1.08-0.90 (m, 3H), 0.65-0.55 (m, 1H). Chiral SFC H (35% MeOH): ee 99%, Rt=3.55 min
    • Example 6: Preparation of 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 6-E1 and 6-E2) Step 1: 2,6-dicyclopropylpyridin-3-amine
  • Figure US20200071322A1-20200305-C00231
  • A mixture of ethyl 2,6-dibromopyridin-3-amine (6.0 g, 23.8 mmol), cyclopropylboronic acid (6.14 g, 71.4 mmol), Pd(OAc)2 (267 mg, 2.38 mmol), tricyclohexylphosphine (668 mg, 6.17 mmol) and tripotassium phosphate (17.7 g, 83.3 mmol) in toluene (80 mL) and water (10 mL) was stirred at 120° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 4:1) to give the desired product 2,6-dicyclopropylpyridin-3-amine as a colorless oil (3.0 g). Yield 95% (ESI 175.0 (M+H)+).
    • Step 2: 2,6-dicyclopropylpyridin-3-amine
  • Figure US20200071322A1-20200305-C00232
  • A mixture of ethyl 2,6-dicyclopropylpyridin-3-amine (3.0 g, 17.2 mmol), tert-butyl nitrite (2.66 g, 25.8 mmol) and cuprousbromide (17.7 g, 25.8 mmol) in acetonitrile (20 mL) was stirred at 65° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 6:1) to give the desired product 3-bromo-2,6-dicyclopropylpyridine as a yellow oil (820 mg). Yield 20% (ESI 239.0 (M+H)+).
    • Step 3: tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00233
  • A mixture of 3-bromo-2,6-dicyclopropylpyridine (800 mg, 3.36 mmol), (2-tert-butoxy-2-oxoethyl)zinc(II) bromide solution 0.5 M in THF (26.9 mL, 13.44 mmol), Pd2(dba)3 (156 mg, 0.17 mmol) and Qphos (121 mg, 0.17 mmol) in THF (12 mL) was stirred at 65° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 4:1) to give the desired product tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)acetate as a yellow oil (550 mg). Yield 60% (ESI 274.0 (M+H)+).
    • Step 4: tert-butyl 2-bromo-2-(2,6-dicyclopropylpyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00234
  • To a solution of tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)acetate (300 mg, 1.1 mmol) in THF (10 mL) at −78° C. was added lithium diisopropylamide solution 2.0 M in THF/hexanes (1.4 mL, 2.8 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, and then a solution of chlorotrimethylsilane (297 mg, 2.75 mmol) in THF (5 mL) was added. The reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (325 mg, 2.75 mmol) in THF (5 mL) was added, and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), concentrated in vacuo and purified by silica gel column (pet ether: EtOAc 4:1) to give the desired product tert-butyl 2-bromo-2-(2,6-dicyclopropylpyridin-3-yl)acetate as a yellow oil (80 mg). Yield 21% (ESI 353 (M+H)+).
    • Step 5: tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00235
  • A mixture of tert-butyl 2-bromo-2-(2,6-dicyclopropylpyridin-3-yl)acetate (80 mg, 0.23 mmol), ((R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (64 mg, 0.23 mmol) and K2CO3 (96 mg, 0.69 mmol) in acetonitrile (8 mL) was stirred 60° C. for 16 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a yellow oil (90 mg). Yield 72% (ESI 547 (M+H)+).
    • Step 6: 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 6-E1 and 6-E2)
  • Figure US20200071322A1-20200305-C00236
  • Tert-butyl 2-(2,6-dicyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (90 mg, 0.16 mmol) was treated with HCl in 1,4-dioxane (4M, 4 mL) at 25° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give diastereomeric products compound 6-E1 (11 mg) and compound 6-E2 (38 mg) as white solids.
  • Compound 6-E1 LC/MS ESI 491.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.52 (s, 1H), 7.77 (d, J=7.9 Hz, 1H), 7.67-7.44 (m, 1H), 7.03 (d, J=7.9 Hz, 1H), 6.53 (d, J=7.3 Hz, 1H), 5.18 (s, 1H), 4.22 (s, 1H), 3.76-3.40 (m, 6H), 3.31-3.28 (m, 2H), 2.79-2.66 (m, 4H), 2.39 (d, J=5.6 Hz, 1H), 2.19 (s, 2H), 1.98-1.93 (m, 3H), 1.76-1.74 (m, 2H), 1.64-1.62 (m, 2H), 1.25-1.14 (m, 1H), 1.06-0.72 (m, 8H).
  • Compound 6-E2 LC/MS ESI 491.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.52 (s, 1H), 7.77 (d, J=7.9 Hz, 1H), 7.67-7.44 (m, 1H), 7.03 (d, J=7.9 Hz, 1H), 6.53 (d, J=7.3 Hz, 1H), 5.27 (s, 1H), 4.23 (s, 1H), 3.76-3.40 (m, 6H), 3.31-3.28 (m, 2H), 2.79-2.66 (m, 4H), 2.39 (d, J=5.6 Hz, 1H), 2.19 (s, 2H), 1.98-1.93 (m, 3H), 1.76-1.74 (m, 2H), 1.64-1.62 (m, 2H), 1.25-1.14 (m, 1H), 1.06-0.72 (m, 8H).
    • Example 7: Preparation of 2-(2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 7-E1 and 7-E2) Step 1: 1-bromo-2-(isopropoxymethyl)benzene
  • Figure US20200071322A1-20200305-C00237
  • To a solution of isopropanol (0.72 g, 12 mmol) in DMF (15 mL) at 0° C. was added NaH (480 mg, 12 mmol). The reaction was stirred at 0° C. for 0.5 hour, then 1-bromo-2-(bromomethyl)benzene (3.0 g, 12 mmol) in DMF (5 mL) was added dropwise. The reaction was stirred at room temperature for 16 hours, then quenched with H2O (10 mL) and extracted with EtOAc (2×20 mL). The combined organic layer was concentrated in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc=10:1) to give the desired product 1-bromo-2-(isopropoxymethyl)benzene (1.6 g). Yield 58% (ESI 229 (M+H)+).
    • Step 2: 2-(isopropoxymethyl)phenylboronic acid
  • Figure US20200071322A1-20200305-C00238
  • To a solution of 1-bromo-2-(isopropoxymethyl)benzene (300 mg, 1.32 mmol) in THF (5 mL) at −78° C., was added nBuLi (2.5M, 0.6 mL, 1.45 mmol) dropwise. The reaction was stirred at −78° C. for 1 hour, and trimethyl borate (500 mg, 2.64 mmol) in THF (2 mL) was added dropwise. The reaction was stirred at room temperature for 1 hour, then quenched with aqueous HCl (1N, 10 mL) and extracted with EtOAc (3×10 mL). The combined organic layer was concentrated in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc=2:1) to give the desired product 2-(isopropoxymethyl)phenylboronic acid as a white solid (120 mg). Yield: 47% (ESI 193 (M−H)−.
    • Step 3: 2-(2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 7-E1 and 7-E2)
  • Figure US20200071322A1-20200305-C00239
  • A mixture of (3R)-tert-butyl 3-(4-(5-methyl-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (131 mg, 0.48 mmol), 2-(isopropoxymethyl)phenylboronic acid (120 mg, 0.62 mmol) and 50% 2-oxoacetic acid (92 mg, 0.62 mmol) in MeCN (5 mL) was stirred at 70° C. for 16 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC B (30-65% MeCN) to give diastereomeric products compound 7-E1 (40 mg) and compound 7-E2 (34 mg) as HCOOH salts.
  • Compound 7-E1 LC/MS ESI 482 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.33 (s, 2H), 7.68-7.66 (m, 1H), 7.52-7.50 (m, 1H), 7.46-7.42 (m, 3H), 6.56 (d, J=7.2 Hz, 1H), 5.09 (s, 1H), 4.90-4.88 (m, 1H), 4.52-4.50 (m, 1H), 4.23-4.21 (m, 1H), 3.82-3.80 (m, 1H), 3.66-3.44 (m, 7H), 3.21-3.19 (m, 1H), 2.81-1.60 (m, 12H), 1.25-1.23 (m, 6H).
  • Compound 7-E2 LC/MS ESI 482 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.33 (s, 2H), 7.65-7.63 (m, 1H), 7.52-7.50 (m, 1H), 7.44-7.42 (m, 3H), 6.56 (d, J=7.2 Hz, 1H), 4.97 (s, 1H), 4.86-4.50 (m, 2H), 4.26-4.24 (m, 1H), 3.85-3.82 (m, 1H), 3.61-3.40 (m, 5H), 3.26-3.22 (m, 3H), 2.81-1.60 (m, 12H), 1.28-1.23 (m, 6H).
    • Example 8: Preparation of 2-(2-(tert-butoxymethyl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 8) Step 1: 1-bromo-2-(tert-butoxymethyl)-4-fluorobenzene
  • Figure US20200071322A1-20200305-C00240
  • NaH (60%, 600 mg, 15 mmol) was added to a solution of 2-methylpropan-2-ol (7.4 g, 100 mmol) in THF (30 mL) at 0° C. The mixture was stirred at 0° C. for 0.5 hour, and 2-bromo-1-(bromomethyl)-4-fluorobenzene (2.68 g, 10 mmol) was added. The mixture was stirred at 80° C. overnight, then cooled to room temperature, quenched with water (50 mL) and extracted with EtOAc (50 mL). The organic layer was dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc 15:1) to give the desired product as a yellow oil (300 mg). Yield 11% (ESI 261 (M+H)+).
    • Step 2: 2-(tert-butoxymethyl)-4-fluorophenylboronic acid
  • Figure US20200071322A1-20200305-C00241
  • n-BuLi (0.4 mL, 2.5 M in hexane, 1 mmol) was added dropwise to a solution of 1-bromo-2-(tert-butoxymethyl)-4-fluorobenzene (150 mg, 0.57 mmol) and triisopropyl borate (188 mg, 1 mmol) in THF (5 mL) at −78° C. The mixture was stirred at −78° C. for 1 hour, then stirred at 25° C. for another 1 hour. The mixture was quenched with aqueous HCl (2N) to pH=5, then extracted with EtOAc (10 mL). The organic layer was dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc 2:1) to give the desired product as a colorless oil (70 mg). Yield 54% (ESI 225 (M−H)−).
    • Step 3: 2-(2-(tert-butoxymethyl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 8)
  • Figure US20200071322A1-20200305-C00242
  • A mixture of 2-(tert-butoxymethyl)-4-fluorophenylboronic acid (75 mg, 0.33 mmol), 2-oxoacetic acid (88 mg, 50% in water, 0.6 mmol) and (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (91 mg, 0.33 mmol) in CH3CN (5 mL) was stirred at 60° C. overnight. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (33-65% MeCN) to give compound 8 as a white solid (22 mg, 13% yield).
  • Compound 8 LC/MS ESI 514 (M+H)+1H NMR (400 MHz, MeOD) δ 7.50-7.42 (m, 2H), 7.17-7.08 (m, 2H), 6.37 (d, J=7.2 Hz, 1H), 4.81-4.74 (m, 2H), 4.55-4.43 (m, 1H), 4.17 (s, 1H), 3.55-3.32 (m, 6H), 3.20-2.95 (m, 2H), 2.72-2.52 (m, 4H), 2.25-1.55 (m, 8H), 1.34-1.28 (m, 9H).
    • Example 9: Preparation of 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 9-E1 and 9-E2) Step 1: ethyl 2-chloro-2-(2-cyclopropylpyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00243
  • A solution of ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate (500 mg, 2.26 mmol) in SOCl2 (5 mL) was stirred at rt for 17 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 4:1) to get the desired product ethyl 2-chloro-2-(2-cyclopropylpyridin-3-yl)acetate as a yellow oil (210 mg). Yield 39% (ESI 240 (M+H)+).
    • Step 2: ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00244
  • A mixture of 7-(5-(3-fluoropyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (230 mg, 0.632 mmol), ethyl 2-chloro-2-(2-cyclopropylpyridin-3-yl)acetate (378 mg, 1.580 mmol) and K2CO3 (262 mg, 1.896 mmol) in acetonitrile (8 mL) was stirred at 60° C. for 16 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate as a yellow oil (120 mg). Yield 38% (ESI 495 (M+H)+).
    • Step 3: 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compounds 9-E1 and 9-E2)
  • Figure US20200071322A1-20200305-C00245
  • ethyl ethyl 2-(2-cyclopropylpyridin-3-yl)-2-(3-fluoro-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetate (120 mg, 0.24 mmol) was treated with LiOH—H2O (40 mg, 0.97 mmol) in MeOH (4 mL) and H2O (1 mL) at 60° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 9 as a white solid (60 mg, 53% yield). The racemic product was separated by Prep chiral SFC F to give diastereomeric products compound 9-E1 (10 mg) and compound 9-E2 (10 mg) as white solids, each as a mixture of 2 stereoisomers.
  • Compound 9-E1 (mixture of 2 stereoisomers) LC/MS ESI 467.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.32 (s, 1H), 8.03 (d, J=7.3 Hz, 1H) 7.28 (m, 2H), 6.41 (d, J=7.3 Hz, 1H), 4.81 (s, 1H), 3.40-2.95 (m, 6H), 2.80-2.50 (m, 5H), 2.25-1.20 (m, 12H), 1.10-0.85 (m, 4H). Chiral SFC F (45% MeOH): ee 76%, Rt=2.72 min
  • Compound 9-E1 (mixture of 2 stereoisomers) LC/MS ESI 467.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.39 (s, 1H), 8.01 (d, J=7.3 Hz, 1H) 7.33 (m, 2H), 6.47 (d, J=7.3 Hz, 1H), 4.96 (s, 1H), 3.45-2.95 (m, 6H), 2.80-2.50 (m, 5H), 2.25-1.20 (m, 12H), 1.10-0.85 (m, 4H). Chiral SFC F (45% MeOH): ee 53%, Rt=3.36 min
    • Example 10: Preparation of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 10) Step 1: ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00246
  • A mixture of (R)-5-methoxy-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine hydrochloride (215 mg, 0.63 mmol), ethyl 2-chloro-2-(2-cyclopropylpyridin-3-yl)acetate (150 mg, 0.63 mmol) and diisopropylethylamine (245 mg, 1.89 mmol) in acetonitrile (8 mL) was stirred under reflux for 24 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a yellow oil (80 mg). Yield 25% (ESI 509 (M+H)+).
    • Step 2: 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 10)
  • Figure US20200071322A1-20200305-C00247
  • Ethyl 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (105 mg, 0.21 mmol) was treated with LiOH—H2O (87 mg, 2.1 mmol) in MeOH (4 mL) and H2O (1 mL) at room temperature for 17 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 10 as a white solid (25 mg, 25% yield).
  • Compound 10 LC/MS ESI 481 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.26-8.25 (m, 1H), 8.08-8.06 (m, 1H), 7.15-7.11 (m, 1H), 6.26-6.24 (m, 1H), 4.57-4.52 (m, 1H), 4.08-4.07 (m, 1H), 3.85 (s, 1H), 3.46-3.41 (m, 2H), 3.25-2.50 (m, 7H), 2.10-1.50 (m, 8H), 1.10-0.80 (m, 4H).
    • Example 11: Preparation of 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 11-E1 and 11-E2) Step 1: 3-bromo-2-cyclobutylpyridine
  • Figure US20200071322A1-20200305-C00248
  • A mixture of magnesium turnings (612 mg, 25.5 mmol) and cyclobutyl bromide (3.4 g, 25.5 mmol) in anhydrous THF (50 mL) was heated for 3 hours at 60° C. until complete dissolution of the magnesium. The solution was cooled to −78° C. and treated with ZnCl2 (3.48 g, 25.5 mmol) in THF (50 mL). The resulting white suspension was warmed gradually to room temperature and stirred for 1 hour. Then a solution of 2,3-dibromopyridine (4 g, 17 mmol) and Pd(PPh3)4 (983 mg, 0.85 mmol) in THF (30 mL) was added to the reaction. The mixture was stirred at 60° C. for 1 hour under N2, then diluted with water (100 mL) and extracted with EtOAc (3×50 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc=10:1) to give the desired product 3-bromo-2-cyclopropylpyridine as a yellow oil (2.3 g). Yield 94% (ESI 212 (M+H)+).
    • Step 2: ethyl 2-(2-cyclobutylpyridin-3-yl)-2-hydroxyacetate
  • Figure US20200071322A1-20200305-C00249
  • To a solution of EtMgBr (1 M, 6.54 mL, 6.54 mmol) in THF (20 mL) at 0° C. under N2 was added n-BuLi (2.5M, 5.2 mL, 13.08 mmol). The solution was stirred at 0° C. for 30 min, then a solution of 3-bromo-2-cyclobutylpyridine (2.3 g, 10.9 mmol) in THF (5 mL) was added at -10° C. The mixture was stirred at that temperature for 30 min. Then ethyl 2-oxoacetate (50% in toluene, 8.9 g, 43.6 mmol) was added, and the reaction was stirred at 0° C. for 2 hours, then poured into 20 mL of a saturated K2CO3 solution and extracted with EtOAc (3×50 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc=2:1) to give the desired product ethyl 2-(2-cyclopropylpyridin-3-yl)-2-hydroxyacetate as a yellow oil (1.1 g). Yield 43% (ESI 236 (M+H)+).
    • Step 3: ethyl 2-chloro-2-(2-cyclobutylpyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00250
  • A solution of ethyl 2-(2-cyclobutylpyridin-3-yl)-2-hydroxyacetate (480 mg, 2 mmol) in SOCl2 (5 mL) was stirred at room temperature overnight. The mixture was concentrated in vacuo, adjusted to pH=8 with aq NaHCO3 and extracted with EtOAc (3×20 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether:EtOAc=10:1) to give the desired product ethyl 2-chloro-2-(2-cyclobutylpyridin-3-yl)acetate as a yellow oil (310 mg). Yield 47% (ESI 254 (M+H)+).
    • Step 4: ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00251
  • A mixture of ethyl 2-chloro-2-(2-cyclobutylpyridin-3-yl)acetate (310 mg, 1.2 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (370 mg, 1.35 mmol) and diisopropylethylamine (464 mg, 3.6 mmol) in acetonitrile (10 mL) was stirred at 50° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH=0%-10%) to give the desired product ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a colorless oil (165 mg, 0.36 mmol). Yield 28% (ESI 493 (M+H)+).
    • Step 5: 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 11-E1 and 11-E2)
  • Figure US20200071322A1-20200305-C00252
  • Ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (165 mg, 0.36 mmol) was treated with LiOH—H2O (70 mg, 1.8 mmol) in MeOH (4 mL) and H2O (1 mL) at room temperature for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-60% MeCN) to give compound 11 as a white solid (110 mg, 70% yield). The racemic product was separated by Prep chiral SFC A to give diastereomeric products compound 11-E1 (35 mg) and compound 11-E2 (35 mg) as white solids.
  • Compound 11-E1 LC/MS ESI 465 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.54 (d, J=4.5 Hz, 1H), 8.02 (d, J=7.5 Hz, 1H), 7.29-7.23 (m, 2H), 6.43 (d, J=7.0 Hz, 1H), 4.71 (s, 1H), 4.26-4.15 (m, 2H), 3.54-3.38 (m, 4H), 3.22-3.07 (m, 4H), 2.75-2.55 (m, 5H), 2.44-2.33 (m, 3H), 2.13-2.05 (m, 3H), 1.92-1.87 (m, 3H), 1.79-1.74 (m, 2H), 1.67-1.63 (m, 2H). Chiral SFC E (45% MeOH): ee 100%, Rt=2.99 min.
  • Compound 11-E2 LC/MS ESI 465 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.55 (d, J=4.5 Hz, 1H), 7.99 (d, J=7.5 Hz, 1H), 7.30-7.22 (m, 2H), 6.44 (d, J=6.0 Hz, 1H), 4.80 (s, 1H), 4.20-4.16 (m, 2H), 3.51-3.39 (m, 5H), 3.24-3.22 (m, 1H), 3.01-2.91 (m, 2H), 2.75-2.59 (m, 5H), 2.42-2.30 (m, 3H), 2.08-2.02 (m, 3H), 1.92-1.64 (m, 7H). Chiral SFC E (45% MeOH): ee 100%, Rt=5.21 min.
    • Example 12: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compound 12) Step 1: methyl 2-(2-iodophenyl)acetate
  • Figure US20200071322A1-20200305-C00253
  • To a solution of 2-(2-iodophenyl)acetic acid (3.67 g, 14 mmol) in MeOH (35 mL) was added 2 mL of concentrated H2SO4. The reaction was stirred at 85° C. for 2 hours, then concentrated in vacuo, adjusted to pH=7˜8 with sat.NaHCO3 solution and extracted with EtOAc (2×30 mL). The combined organic phase was washed with brine, dried over Na2SO4 and concentrated to give the desired product methyl 2-(2-iodophenyl)acetate (3.7 g) as an orange oil. Yield 96% (ESI 277 (M+H)+).
    • Step 2: methyl 2-(2-(3,6-dihydro-2H-pyran-4-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00254
  • A mixture of methyl 2-(2-iodophenyl)acetate (828 mg, 3.0 mmol), 2-(3,6-dihydro-2H-pyran-4-yl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane (945 mg, 4.5 mmol), PdCl2(PPh3)2 (89 mg, 0.12 mmol) and Na2CO3 (636 mg, 6. mmol) in 1,4-dioxane (30 mL) and water (6 mL) was stirred under N2 at 90° C. overnight. The mixture was diluted with H2O (10 mL) and extracted with EtOAc (20 mL). The organic phase was concentrated in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc 10:1) to give the desired product tert-butyl 2-(3-(2-methoxypropan-2-yl)isochroman-5-yl)acetate as a pale orange oil (488 mg). Yield 70% (ESI 255.1 (M+Na)+).
    • Step 3: methyl 2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00255
  • A mixture of tert-butyl 2-(3-(2-methoxypropan-2-yl)isochroman-5-yl)acetate (488 mg, 2.1 mmol) and Pd(OH)2/C(20%, 120 mg) in MeOH (20 mL) was stirred under balloon hydrogen at 35° C. for 6 hours. The reaction was filtered and concentrated in vacuo to provide the desired product methyl 2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate (460 mg) as a colorless oil. Yield 95% (ESI 235.2 (M+H)+).
    • Step 4: tert-butyl 2-bromo-2-(3-(2-methoxypropan-2-yl)isochroman-5-yl)acetate
  • Figure US20200071322A1-20200305-C00256
  • To a solution of 2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate (234 mg, 1.0 mmol) in THF (10 mL) at −78° C. was added lithium diisopropylamide solution 2.0 M in THF/hexanes (1.0 mL, 2.0 mmol) dropwise. The reaction was stirred at −78° C. for 20 min. Then a solution of chlorotrimethylsilane (218 mg, 2.0 mmol) in THF (0.5 mL) was added, and the reaction was stirred at −78° C. for another 10 min. Then a solution of NBS (356 mg, 2.0 mmol) in THF (4 mL) was added, and the reaction was stirred at −78° C. for 10 min, then poured into water (10 mL) and extracted with EtOAc (20 mL). The organic phase was washed with sat.NaHCO3 solution and water and concentrated in vacuo to give the crude product as a yellow oil (320 mg). Yield 48% (ESI 315.1 (M+H)+).
    • Step 5: methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00257
  • A mixture of tert-butyl 2-bromo-2-(3-(2-methoxypropan-2-yl)isochroman-5-yl)acetate (320 mg, 47% purity, 0.48 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (132 mg, 0.48 mmol) and diisopropylethylamine (186 mg, 1.44 mmol) in acetonitrile (12 mL) was stirred at room temperature for 1 hour. The mixture was diluted with water (8 mL) and extracted with EtOAc (25 mL). The organic phase was washed with brine, dried over Na2SO4 and concentrated in vacuo. The residue was purified by Prep-HPLC (NH4HCO3, H2O/MeCN) to give methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate as a white solid (135 mg). Yield 55% (ESI 508.1 (M+H)+).
    • Step 6: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compound 12)
  • Figure US20200071322A1-20200305-C00258
  • A solution of methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate (115 mg) in THF (5 mL) was treated with LiOH (1 M in H2O, 2.7 mL) at room temperature overnight. Solvent was removed in vacuo, and the residue was purified by prep HPLC A (30-64% MeCN/H2O) to give compound 12 as white solid (82 mg).
  • Compound 12 LC/MS ESI 494.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ7.64 (m, 1H), 7.41 (m, 2H), 7.28 (m, 1H), 7.16 (m, 1H), 6.39 (m, 1H), 4.94 (m, 1H), 4.22 (m, 1H), 4.01 (m, 2H), 3.55-3.64 (m, 4H), 3.40 (m, 3H), 3.33-3.37 (m, 3H), 2.72 (t, J=6.5 Hz, 2H), 2.57 (t, J=6.5 Hz, 2H), 2.01-2.24 (m, 2H), 1.88-1.98 (m, 4H), 1.61-1.77 (m, 6H).
    • Example 13: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compounds 13-E1 and 13-E2) Step 1: methyl 2-(2-chloropyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00259
  • To a solution of 2-(2-chloropyridin-3-yl)acetic acid (1.71 g, 10 mmol) in MeOH (35 mL) was added concentrated H2SO4 (2 mL). The reaction was stirred at 85° C. for 2 hours, then concentrated in vacuo, adjusted to pH=7-8 with sat. NaHCO3 solution and extracted with EtOAc (2×30 mL). The combined organic phase was washed with brine, dried over Na2SO4 and concentrated to give the desired product methyl 2-(2-chloropyridin-3-yl)acetate as an orange oil (1.51 g, Yield 81%). (ESI 186 (M+H)+).
    • Step 2: methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)pyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00260
  • A mixture of methyl 2-(2-chloropyridin-3-yl)acetate (372 mg, 2.0 mmol), 2-(3,4-dihydro-2H-pyran-6-yl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane (420 mg, 2.0 mmol), X-Phos Pd G4 (68 mg, 0.08 mmol) and K2CO3 (552 mg, 4 mmol) in 1,4-dioxane (10 mL) and water (2.5 mL) was heated at 115° C. by microwave for 2 hours. The mixture was diluted with H2O (10 mL) and extracted with EtOAc (20 mL). The organic phase was concentrated in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc 10:1) to give the desired product methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)pyridin-3-yl)acetate as a pale orange oil (308 mg). Yield 66% (ESI 234.1 (M+H)+).
    • Step 3: methyl 2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00261
  • A mixture of methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)pyridin-3-yl)acetate (302 mg, 1.3 mmol) and Pd(OH)2/C(20%, 100 mg) in MeOH (16 mL) was stirred under balloon H2 at 35° C. for 4 hours. The reaction was filtered and concentrated in vacuo to give the desired product methyl 2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate as an orange oil (301 mg). Yield 94% (ESI 236.2 (M+H)+).
    • Step 4: methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00262
  • To a solution of 2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate methyl 2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate (301 mg, 1.28 mmol) in THF (8 mL) at −78° C., was added lithium diisopropylamide solution 2.0 M in THF/hexanes (1.28 mL, 2.56 mmol) dropwise. The reaction was stirred at −78° C. for 20 min. Then a solution of chlorotrimethylsilane (278 mg, 2.56 mmol) in THF (0.5 mL) was added, and the reaction was stirred at −78° C. for another 10 min. Then a solution of NBS (456 mg, 2.56 mmol) in THF (4 mL) was added, and the reaction was stirred at −78° C. for 10 min, then poured into water (10 mL) and extracted with EtOAc (20 mL). The organic phase was washed with sat.NaHCO3 solution and water and concentrated in vacuo to give the crude product as a yellow oil (390 mg, purity 40%). Yield 39%. (ESI 315.1 (M+H)+).
    • Step 5: methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate
  • Figure US20200071322A1-20200305-C00263
  • A mixture of methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate (390 mg, 40% purity), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (137 mg, 0.50 mmol) and diisopropylethylamine (194 mg, 1.50 mmol) in acetonitrile (10 mL) was stirred at room temperature for 2 hours. The mixture was diluted with water (8 mL) and extracted with EtOAc (25 mL). The organic phase was washed with brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by Prep-HPLC A (40-75% MeCN) to give the desired product methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)pyridin-3-yl)acetate (105 mg) as a white sold. Yield 41% (ESI 509.2 (M+H)+).
    • Step 6: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetic acid (Compounds 13-E1 and 13-E2)
  • Figure US20200071322A1-20200305-C00264
  • A solution of ethyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-4-yl)phenyl)acetate (71 mg, 0.14 mmol) in THF (5 mL) was treated with LiOH (1 M in H2O, 2.1 mL) at room temperature overnight. The mixture was adjusted to pH=5-6 with aqueous HCl (1N) and concentrated in vacuo, and the residue was purified by preparatory HPLC A (30-64% MeCN) to give diastereomeric products compound 13-E1 (23 mg) and compound 13-E2 (12 mg) as white solids, each as a mixture of 2 stereoisomers.
  • Compound 13-E1 (mixture of 2 stereoisomers) LC/MS ESI 495.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ8.46 (m, 1H), 8.21 (m, 1H), 7.33 (m, H), 7.16 (m, 1H), 6.38 (m, 1H), 5.12 (m, 1H), 4.41 (m, 1H), 4.05 (m, 2H), 3.75 (m, 1H), 3.75-3.37 (m, 4H), 3.30-2.80 (m, 2H), 2.73-2.69 (m, 4H), 2.64-2.54 (m, 2H), 1.96 (m, 1H), 1.91-1.87 (m, 6H), 1.78-1.58 (m, 7H).
  • Compound 13-E2 (mixture of 2 stereoisomers) LC/MS ESI 495.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ8.46 (m, 1H), 8.14 (m, 1H), 7.34 (m, 1H), 7.16 (m, 1H), 6.38 (m, 1H), 5.04 (m, 1H), 4.11 (m, 2H), 3.68 (m, 1H), 3.69-3.37 (m, 5H), 3.11-2.98 (m, 2H), 2.87-2.70 (m, 4H), 2.56-2.54 (m, 2H), 2.06-1.80 (m, 7H), 1.78-1.59 (m, 7H).
    • Example 14: Preparation of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 14-E1 and 14-E2) Step 1: sodium (2-cyclopropylpyridin-3-yl)(hydroxy)methanesulfonate
  • Figure US20200071322A1-20200305-C00265
  • 2-Bromo-3-pyridinecarboxaldehyde (1 g, 5.38 mmol), cyclopropylboronic acid (1.385 g, 16.13 mmol) and sodium carbonate (2.279 g, 21.50 mmol) were dissolved in 1,2-dimethoxyethane (20 mL) and water (5 mL). The mixture was flushed with argon and bis(triphenylphosphine)palladium(II) dichloride (0.377 g, 0.538 mmol) was added. The reaction was sealed and heated at 100° C. for 16 hours, then diluted with water and extracted with diethyl ether. The organic layer was washed twice with water, and a solution of sodium bisulfite (1.119 g, 10.75 mmol) in water and some methanol were added. The diethyl ether was evaporated in vacuo, and the resulting water/methanol mixture was used as such in the next step.
    • Step 2: 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetonitrile
  • Figure US20200071322A1-20200305-C00266
  • A water/methanol mixture containing sodium (2-cyclopropylpyridin-3-yl)(hydroxy)methanesulfonate (1.352 g, 5.38 mmol) was added to (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (0.963 g, 3.50 mmol), followed by potassium cyanide (1.752 g, 26.9 mmol). After 16 hours some methanol was added. After 64 hours, the reaction mixture was diluted with water and extracted three times with ethyl acetate. The combined organic layers were dried over sodium sulfate and concentrated in vacuo to afford the desired product 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetonitrile (1.511 g). Yield 65% (ESI 430 (M−H)).
    • Step 3: 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetamide
  • Figure US20200071322A1-20200305-C00267
  • To a solution of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetonitrile (1.511 g, 3.5 mmol) in dichloromethane (10 mL) was added sulfuric acid (25 mL, 469 mmol). The reaction was stirred at room temperature for 24 hours, then quenched on ice, neutralised using aqueous ammonia and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated, and the residue was purified by reversed phase chromatography (10 mM solution of ammonium hydrogen carbonate in water, 20-60% acetonitrile) to afford the desired product 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetamide (399 mg). Yield 25% (ESI 450 (M+H)+).
    • Step 4: 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 14-E1 and 14-E2)
  • Figure US20200071322A1-20200305-C00268
  • A solution of 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetamide (399 mg, 0.887 mmol) in hydrochloric acid (10 mL, 40 mmol, 4N solution in water) was stirred at 70° C. for 88 hours. The mixture was concentrated, and the residue was dissolved in water and then freeze-dried. The residue was dissolved in water (10 mL) and this was purified using reversed phase chromatography to afford 2-(2-cyclopropylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid compound 14 (311 mg) as a diastereoisomeric mixture. Yield 78% (ESI 451 (M+H)+). The mixture was separated by chiral SFC to give diastereomeric products compound 14-E1 (107 mg) and compound 14-E2 (100 mg). Method: Water Acquity UPC2 (Binary Solvent Manager, Isocratic Solvent Manager, Sample Manager, Column Manager 30S, Convergence Manager, PDA Detector, Acquity QDa Detector); Column: Chiralpak IC for SFC use (100×4.6 mm, 5 μm). Temperature: 35° C. Back Pressure: 170 bar. Flow: 2.5 mL/min. Eluent A: C02. Eluent B: Methanol+20 mM Ammonia. Gradient: t0=5% B, t2.5 min=50% B, t30 min=50% B, Post time: 0.5 min. Detection PDA: 210-320 nm. Detection MS: ESI, Mass Range: 700-1250 (positive) 1 Hz, Cone: 15 V.
  • Compound 14-E1: 107 mg, LC/MS ESI 451 (M+H)+. 1H NMR (400 MHz, Methanol-d4) δ 8.37 (dd, J=4.7, 1.7 Hz, 1H), 7.97 (dd, J=8.0, 1.8 Hz, 1H), 7.24-7.08 (m, 2H), 6.40 (d, J=7.3 Hz, 1H), 5.04 (s, 1H), 4.22-4.13 (m, 1H), 3.55-3.33 (m, 5H), 3.23-3.10 (m, 2H), 2.79-2.66 (m, 2H), 2.66-2.46 (m, 3H), 2.22-2.05 (m, 2H), 1.94-1.82 (m, 2H), 1.80-1.45 (m, 5H), 1.27-1.15 (m, 1H), 1.07-0.88 (m, 3H).
  • Compound 14-E2: 100 mg, LC/MS ESI 451 (M+H)+. 1H NMR (400 MHz, Methanol-d4) δ 8.38 (dd, J=4.8, 1.7 Hz, 1H), 7.94 (dd, J=7.8, 1.7 Hz, 1H), 7.24-7.13 (m, 2H), 6.40 (d, J=7.3 Hz, 1H), 5.13 (s, 1H), 4.25-4.14 (m, 1H), 3.58-3.32 (m, 6H), 3.27-3.14 (m, 1H), 3.07-2.95 (m, 1H), 2.78-2.66 (m, 2H), 2.64-2.49 (m, 2H), 2.49-2.38 (m, 1H), 2.18-2.02 (m, 2H), 1.95-1.82 (m, 2H), 1.81-1.45 (m, 5H), 1.30-1.15 (m, 1H), 1.06-0.86 (m, 3H).
    • Example 15: Preparation of 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (compounds 15-E1 and 15-E2) Step 1: 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (compounds 15-E1 and 15-E2)
  • Figure US20200071322A1-20200305-C00269
  • To a solution of (R)-7-(5-(pyrrolidin-3-yloxy)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine dihydrochloride (200 mg, 0.55 mmol) in DMF (2 mL) was added 2-cyclopropylphenylboronic acid (116 mg, 0.72 mmol) and 2-oxoacetic acid (56 mg, 0.6 mmol). The reaction was stirred at 80° C. for 1 h. The reaction mixture was purified by prep-HPLC (40-65% MeCN) to give 90 mg racemic compound 15. The racemic product was separated by prep chiral SFC A to give diastereomeric products compound 15-E1 (23 mg) and compound 15-E2 (22 mg) as white solids.
  • Compound 15-E1 LC/MS ESI 464.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.61 (d, J=7.1 Hz, 1H), 7.31 (m, 2H), 7.16 (dd, J=21.5, 7.4 Hz, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.35 (s, 1H), 4.23 (s, 1H), 3.65 (m, 1H), 3.49 (t, J=6.4 Hz, 2H), 3.42-3.36 (m, 2H), 3.30-2.99 (m, 3H), 2.70 (t, J=6.3 Hz, 2H), 2.53 (t, J=7.5 Hz, 2H), 2.21 (m, 3H), 1.88 (m, 2H), 1.12-0.94 (m, 3H), 0.70-0.51 (m, 1H). Chiral SFC A (40% MeOH): ee 98%, Rt=2.46 min.
  • Compound 15-E2 LC/MS ESI 464.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.54 (d, J=7.5 Hz, 1H), 7.17 (m, 2H), 7.07-6.97 (m, 2H), 6.26 (d, J=7.3 Hz, 1H), 5.08 (s, 1H), 4.06 (s, 1H), 3.43-3.24 (m, 5H), 3.14-2.98 (m, 2H), 2.59 (t, J=6.2 Hz, 2H), 2.48-2.36 (m, 2H), 2.15 (m, 3H), 1.81-1.70 (m, 2H), 1.63-1.45 (m, 4H), 1.39-1.26 (m, 2H), 0.96-0.77 (m, 3H), 0.55-0.42 (m, 1H). Chiral SFC A (40% MeOH): ee 98%, Rt=3.5 min.
    • Example 16: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetic acid (compounds 16-E1 and 16-E2) Step 1: methyl 2-(2-(furan-2-yl)phenyl) acetate
  • Figure US20200071322A1-20200305-C00270
  • To a solution of methyl 2-(2-iodophenyl)acetate (552 mg, 2 mmol) in 5 mL dry DMF was added furan-2-ylboronic acid (224 mg, 2 mmol), tris(dibenzylideneacetone) dipalladium (0) (91.5 mg, 0.1 mmol), X-Phos (47.6 mg, 0.1 mmol), and potassium phosphate (424 mg, 2 mmol). The mixture was stirred at 60° C. for 1 hour under N2. The reaction was allowed to cool and diluted with ethyl acetate (20 mL) and water (20 mL). The organic layer was separated and the aqueous layer was extracted with ethyl acetate three times (20 mL×2). The combined organic layer was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 5˜20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(furan-2-yl)phenyl) acetate 340 mg (78.3%); (ESI 217 (M+H)+).
    • Step 2: methyl 2-(2-(tetrahydrofuran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00271
  • To a solution of methyl 2-(2-(furan-2-yl) phenyl) acetate (340 mg, 1.57 mmol) in 10 ml anhydrous MeOH was added Pd/C (30 mg). The mixture was stirred for 3 hours at 40° C. under H2 atmosphere (balloon). After the reaction was over, the catalyst was removed by filtration and the filtrate was concentrated under reduced pressure. The residue was chromatographed (Combiflash), using 5-20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(tetrahydrofuran-2-yl)phenyl)acetate (290 mg, 84%) as an oil. (ESI 221 (M+H)+)
    • Step 3: methyl 2-bromo-2-(2-(tetrahydrofuran-2-yl)phenyl) acetate
  • Figure US20200071322A1-20200305-C00272
  • A solution of methyl 2-(2-(tetrahydrofuran-2-yl)phenyl)acetate (220 mg, 1 mmol) in 10 mL THF under N2 was cooled to −78° C. and treated with LDA (1.25 mL, 2.5 mmol, 2M in THF). The reaction was stirred for 0.5 h, treated with TMSCl (324 mg, 3 mmol) and, after 0.25 h, NBS (534 mg, 3 mmol) as a solution in 10 mL dry THF. The mixture was stirred for 0.5 h at -78° C. and water (10 mL) was added to quench the reaction. The mixture was extracted with ethyl acetate (20 mL×2). The combined organic layer was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-bromo-2-(2-(tetrahydrofuran-2-yl)phenyl) acetate (210 mg, 70.5%); (ESI 299 (M+H)+)
    • Step 4: methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00273
  • To a solution of methyl 2-bromo-2-(2-(tetrahydrofuran-2-yl)phenyl)acetate (100 mg, 0.33 mmol) in 5 mL acetonitrile was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (92 mg, 0.33 mmol) and diisopropylethylamine (129 mg, 1 mmol). The reaction was stirred for 2 hours, diluted with water (10 mL) and extracted with ethyl acetate (20 mL×3). The combined organic layers were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 20-80% EtOAc/petroleum ether as eluent, to give methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetate (90 mg, 54.4%). (ESI 494 (M+H)+)
    • Step 5: 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetic acid (compounds 16-E1 and 16-E2)
  • Figure US20200071322A1-20200305-C00274
  • To a solution of methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-2-yl)phenyl)acetate (90 mg, 0.18 mmol) in 5 mL methanol was added LiOH (9 mg, 0.4 mmol) and water (2 mL). The reaction was stirred for 5 h, filtered and concentrated under reduced pressure. The residue was purified using reversed-phase semi-preparative HPLC to give diastereomeric products compound 16-E1 (40 mg, Yield 45.7%) and compound 16-E2 (19 mg, Yield 22.7%), each as a mixture of two stereoisomers.
  • Compound 16-E1 (mixture of 2 stereoisomers): LC/MS ESI 480.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.69 (dd, J=11.4, 7.8 Hz, 1H), 7.55 (d, J=7.8 Hz, 1H), 7.41 (t, J=7.5 Hz, 1H), 7.38-7.29 (m, 1H), 7.15 (d, J=7.3 Hz, 1H), 6.39 (dd, J=7.3, 2.7 Hz, 1H), 5.30 (dt, J=33.4, 7.0 Hz, 1H), 4.97 (s, 1H), 4.17 (d, J=21.0 Hz, 1H), 4.08 (dd, J=14.1, 6.9 Hz, 1H), 3.90 (ddt, J=14.0, 9.6, 6.9 Hz, 1H), 3.57 (s, 1H), 3.51-3.35 (m, 4H), 3.29-2.98 (m, 3H), 2.71 (t, J=6.3 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 2.52-2.42 (m, 1H), 2.18-1.94 (m, 5H), 1.88 (dd, J=11.5, 6.1 Hz, 2H), 1.77-1.69 (m, 2H), 1.62 (dd, J=13.6, 6.7 Hz, 2H).
  • Compound 16-E2 (mixture of 2 stereoisomers) LC/MS ESI 480.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.65 (d, J=5.5 Hz, 1H), 7.46 (d, J=7.6 Hz, 1H), 7.41-7.30 (m, 2H), 7.16 (d, J=7.3 Hz, 1H), 6.39 (dd, J=7.3, 1.6 Hz, 1H), 5.23-5.10 (m, 1H), 4.96 (s, 1H), 4.19-4.06 (m, 2H), 3.93-3.84 (m, 1H), 3.57 (s, 1H), 3.50-3.36 (m, 5H), 3.16-2.96 (m, 2H), 2.75-2.65 (m, 2H), 2.56 (t, J=7.4 Hz, 2H), 2.45-2.35 (m, 1H), 2.16-1.99 (m, 5H), 1.88 (dd, J=11.4, 5.8 Hz, 2H), 1.76-1.68 (m, 2H), 1.65-1.59 (m, 2H).
    • Example 17: Preparation of 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy) pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetic acid (Compound 17) Step 1: methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00275
  • To a solution of methyl 2-(2-iodophenyl)acetate (1.3 g, 4.8 mmol) in 20 mL dry DME and EtOH (5 mL) were added 3,4-dihydro-2H-pyran-6-boronic acid pinacol ester (1.0 g, 4.8 mmol), tetrakis(triphenylphosphine)palladium (0) (277 mg, 0.24 mmol), and sodium carbonate (1.0 g, 9.6 mmol) and the mixture was heated at 100° C. for 12 h under N2. The mixture was allowed to cool to room temperature and diluted with ethyl acetate (50 mL) and water (10 mL). The organic layer was separated and the aqueous layer was extracted with ethyl acetate (50 mL×3). The organic phases were combined, washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)phenyl)acetate (0.4 g, 36%) as an oil. (ESI 233.1 (m+1)+).
    • Step 2: methyl 2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00276
  • A mixture of methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)phenyl)acetate (300 mg, 1.3 mmol) and Pd(OH)2/C (100 mg) in MeOH (25 mL) was hydrogenated (balloon) for 3 h at 35° C. The catalyst was removed by filtration and the filtrate was concentrated under reduced pressure. The resulting residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (180 mg, 60%) as an oil. (ESI 235.1 (m+1)+).
    • Step 3: methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00277
  • To a stirred solution of methyl 2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (150 mg, 0.64 mmol) in THF (10 mL) at −78° C. under N2 was added LDA (1.25 mL, 2.5 mmol, 2M in THF) and the reaction was stirred for 0.5 h, TMSCl (324 mg, 3.0 mmol) was added, the reaction was stirred for 0.25 h, then NBS (445 mg, 2.5 mmol) was added as a solution in THF (10 mL). The reaction was stirred for 0.5 h at −78° C. and quenched by the addition of water (10 mL). The mixture was extracted with ethyl acetate (30 mL×3) and the combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (65 mg, 33%). (ESI 313.2 (m+1)+).
    • Step 4: methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00278
  • A mixture of methyl 2-bromo-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (65 mg, 0.21 mmol), (57 mg, 0.21 mmol) and diisopropylethylamine (65 mg, 0.5 mmol) in acetonitrile (8 mL) was stirred at 25° C. for 16 h. The solvent was removed under reduced pressure and the residue was chromatographed on silica gel (DCM: MeOH 20:1) to give ethyl methyl 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (30 mg, 28%) as an oil. (ESI 508.1 (m+1)+)
    • Step 5: 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-2-yl)phenyl)acetic acid (compound 17)
  • Figure US20200071322A1-20200305-C00279
  • Methyl 2-(2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl) butoxy) pyrrolidin-1-yl)acetate (30 mg, 0.28 mmol) was treated with LiOH (52 mg, 1.24 mmol) in MeOH (4 mL) and H2O (1 mL) at 25° C. for 3 hours. The solvent was removed under reduced pressure and the residue was separated using semi-preparative reversed-phase HPLC (Prep HPLC A, 30-65% MeCN) to give compound 17 as a solid (10 mg, 34%).
  • Compound 17: LC/MS ESI 494.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 1H NMR (500 MHz, MeOD) δ 7.68 (t, J=8.3 Hz, 1H), 7.57 (d, J=7.8 Hz, 1H), 7.40 (dt, J=13.8, 7.5 Hz, 2H), 7.15 (d, J=7.3 Hz, 1H), 6.38 (dd, J=7.3, 3.3 Hz, 1H), 4.89-4.76 (m, 2H), 4.18 (d, J=17.9 Hz, 1H), 4.09-3.94 (m, 1H), 3.72 (dd, J=22.4, 10.7 Hz, 1H), 3.54-3.43 (m, 2H), 3.38 (dd, J=10.1, 4.5 Hz, 3H), 2.77-2.65 (m, 2H), 2.55 (t, J=6.7 Hz, 2H), 2.17-1.97 (m, 4H), 1.93-1.85 (m, 2H), 1.81-1.58 (m, 8H), 1.51-1.45 (m, 1H), 1.33 (d, J=22.7 Hz, 3H).
    • Example 18: Preparation of 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 18-E1 and 18-E2) Step 1: methyl 2-(2-bromo-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00280
  • To a solution of 2-(2-bromo-5-fluorophenyl) acetic acid (10 g, 43 mmol) in 60 mL MeOH was added 0.5 mL H2SO4. The mixture was refluxed for 4 hours, allowed to cool to room temperature and concentrated under reduced pressure. The resulting pale yellow oil (10 g, 94.3%) was used without any further purification. (ESI 246.1 (M+H)+)
    • Step 2: methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00281
  • To solution of methyl 2-(2-bromo-5-fluorophenyl)acetate (6.3 g, 25.6 mmol) in DMF (60 mL) was added 3,4-dihydro-2H-pyran-6-boronic acid pinacol ester (5 g, 23.8 mmol), tris(dibenzylideneacetone) dipalladium (0) (468 mg, 0.52 mmol), X-Phos (238 mg, 0.52 mmol), and potassium phosphate (2.1 g, 25.6 mmol). The mixture was stirred at 60° C. for 12 hours under N2. The mixture was allowed to cool to room temperature an partitioned between ethyl acetate (120 mL) and water (120 mL). The organic layer was separated and the aqueous layer was extracted with ethyl acetate (60 mL×3). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)-5-fluorophenyl)acetate (5.2 g, 87.4%). (ESI 251.1 (M+H)+)
    • Step 3: methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00282
  • To a solution of methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)-5-fluorophenyl)acetate (500 mg, 2 mmol) in 25 ml anhydrous MeOH was added diisopropylethylamine (0.5 ml) and Pd/C (100 mg). The mixture was stirred for 3 hours at 40° C. under H2 (balloon). The catalyst was removed by filtration and the filtrate was concentrated under reduced pressure. The residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(3,4-dihydro-2H-pyran-6-yl)-5-fluorophenyl)acetate (260 mg, 52%) as an oil. (ESI 253.1 (M+H)+)
    • Step 4: methyl 2-bromo-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00283
  • LDA (1.25 ml, 2.5 mmol, 2M in THF) was added to a solution of methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (260 mg, 1.03 mmol) in 10 mL THF at −78° C. under N2. The reaction was stirred for 0.5 h and TMSCl (324 mg, 3 mmol) was added. After an additional 0.25 h a solution of NBS (534 mg, 3 mmol) in 10 mL THF was added and reaction was stirred for 0.5 h at −78° C. The mixture was allowed to warm to room temperature and diluted with water (10 mL). The mixture was extracted with ethyl acetate (30 mL×3) and the combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-bromo-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (280 mg, 84.8%). (ESI 333.1 (M+H)+).
    • Step 5: methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00284
  • To a solution of methyl 2-bromo-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (70 mg, 0.21 mmol) in DMF (5 mL) was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (57 mg, 0.21 mmol) and diisopropylethylamine (81 mg, 0.63 mmol) and the reaction was stirred for 2 h. Th mixture was diluted with water (10 mL) and extracted with EtOAc (20 mL, X2). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 20-80% EtOAc/petroleum ether as eluent, to give methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (70 mg, 62.8%). (ESI 526.2 (M+H)+)
    • Step 6: 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 18-E1 and 18-E2)
  • Figure US20200071322A1-20200305-C00285
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (70 mg, 0.13 mmol) in 5 mL MeOH was added LiOH (10 mg, 0.4 mmol) and water (2 mL). The reaction was stirred for 2 hours, filtered and concentrated under reduced pressure. The residue was chromatographed by semi-preparative reversed-phase HPLC to give diastereomeric products compound 18-E1 (25 mg, 36.7%) and compound 18-E2 (13 mg, yield 18.3%), each as a mixture of 2 stereoisomers.
  • Compound 18-E1 (mixture of 2 stereoisomers): LC/MS ESI 512.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.58 (dd, J=8.8, 5.9 Hz, 1H), 7.52-7.42 (m, 1H), 7.21-7.11 (m, 2H), 6.40 (d, J=7.3 Hz, 1H), 4.80 (dd, J=21.1, 11.7 Hz, 2H), 4.22-4.12 (m, 1H), 4.04 (dd, J=10.4, 5.6 Hz, 1H), 3.76-3.66 (m, 1H), 3.61 (d, J=8.1 Hz, 1H), 3.49 (dtd, J=12.6, 6.3, 3.3 Hz, 2H), 3.42-3.34 (m, 3H), 3.22-2.99 (m, 2H), 2.72 (t, J=6.2 Hz, 2H), 2.60-2.51 (m, 2H), 2.16-1.96 (m, 4H), 1.92-1.82 (m, 2H), 1.70 (dddd, J=28.3, 22.6, 9.4, 4.8 Hz, 9H).
  • Compound 18-E2 (mixture of 2 stereoisomers): LC/MS ESI 512.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.44 (dt, J=8.5, 6.0 Hz, 2H), 7.18 (t, J=7.7 Hz, 1H), 7.10 (qd, J=8.4, 2.6 Hz, 1H), 6.39 (dd, J=7.3, 4.0 Hz, 1H), 5.21 (s, 1H), 4.74 (dd, J=29.6, 11.1 Hz, 1H), 4.10 (dd, J=26.7, 15.4 Hz, 2H), 3.66 (dd, J=20.8, 9.7 Hz, 1H), 3.54-3.37 (m, 6H), 3.15-2.96 (m, 2H), 2.72 (t, J=6.2 Hz, 2H), 2.58 (dt, J=14.9, 6.9 Hz, 2H), 2.10 (dd, J=34.9, 11.9 Hz, 2H), 1.99-1.80 (m, 5H), 1.77-1.66 (m, 4H), 1.63-1.55 (m, 3H).
    • Example 19: Preparation of 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 19-E1, 19-E2, 19-E3 and 19-E4) Step 1: Methyl 2-(2-bromo-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00286
  • To a solution of 2-(2-bromo-5-fluorophenyl) acetic acid (10 g, 43 mmol) in MeOH (60 mL) was added 0.5 mL H2SO4. The mixture was refluxed for 4 hours, allowed to cool to room temperature and the solvent was removed under reduced pressure. The resulting oil (10 g, 94.3%) was used without further purification. (ESI 246.1 (M+H)+)
    • Step 2: Methyl 2-(2-(2,5-dihydrofuran-3-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00287
  • To a solution of methyl 2-(2-bromo-5-fluorophenyl)acetate (492 mg, 2 mmol) in DMF (5 mL) was added 2-(2,5-dihydrofuran-3-yl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane (392 mg, 2 mmol), tris(dibenzylideneacetone) dipalladium (0) (91 mg, 0.1 mmol), X-Phos (47.6 mg, 0.1 mmol), and potassium phosphate (424 mg, 2 mmol). The resulting mixture was stirred at 60° C. for 2 hours under N2, allowed to cool to room temperature and partitioned between ethyl acetate (20 mL) and water (20 mL). The organic layer was separated and the aqueous layer was extracted with ethyl acetate (20 mL×3). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 20-80% EtOAc/petroleum ether as eluent, to give methyl 2-(2-(2,5-dihydrofuran-3-yl)-5-fluorophenyl)acetate (350 mg, 73%). (ESI 237.2 (M+H)+)
    • Step 3: Methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00288
  • To a solution of methyl 2-(2-(2,5-dihydrofuran-3-yl)-5-fluorophenyl) acetate (350 mg, 1.48 mmol) in methanol (10 mL) was added Pd/C (50 mg). The mixture was stirred for 3 hours at 40° C. under H2 (balloon). The catalyst was removed by filtration and the filtrate was concentrated under reduced pressure. The residue was chromatographed (Combiflash), using 5-20% EtOAc/petroleum ether as eluent, to give methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate (260 mg, 73%) as an oil. LCMS: 239 (M+H)+
    • Step 4: methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00289
  • A solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate (260 mg, 1.09 mmol) in THF (10 mL) under N2 was cooled to −78° C. and treated with LDA (1.25 mL, 2.5 mmol, 2 M in THF) and the mixture was stirred for 0.5 h. TMSCl (324 mg, 3 mmol) was added, the reaction was stirred for 0.25 h and NBS (534 mg, 3 mmol) in THF (10 mL) was added. The reaction was stirred for 0.5 h, diluted with water and extracted with ethyl acetate (30 mL×3). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, The residue was chromatographed (Combiflash), using 5-20% EtOAc/petroleum ether as eluent, to give methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate (250 mg, 71.8%) as an oil. (ESI 317.2) (M+H)+)
    • Step 5: methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00290
  • To a solution of methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)acetate (100 mg, 0.31 mmol) in 5 mL dry DMF was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (87 mg, 0.31 mmol) and diisopropylethylamine (120 mg, 0.93 mmol). The reaction was stirred for 2 h, diluted with water (10 mL) and extracted with ethyl acetate (20 mL×3). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using 20-80% EtOAc/petroleum ether as eluent, to give methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (110 mg, 68%) as a solid. (ESI 512 (M+H)+).
    • Step 6: 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 19-E1, 19-E2, 19-E3 and 19-E4)
  • Figure US20200071322A1-20200305-C00291
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (110 mg, 0.21 mmol) in methanol (5 mL) was added LiOH (20 mg, 0.8 mmol) and water (4 mL). The reaction was stirred for 2 h, filtered and concentrated under reduced pressure. The resulting the residue was chromatographed using semi-preparative reversed-phase HPLC to give diastereomeric compounds compound 19-E1 (10 mg, yield 9.3%), compound 19-E2 (10 mg, yield 9.3%), compound 19-E3 (10 mg, yield 9.3%) and compound 19-E4 (10 mg, yield 9.3%).
  • Compound 19-E1: LC/MS ESI 498.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.48 (dd, J=8.8, 5.7 Hz, 1H), 7.42 (dd, J=10.1, 2.7 Hz, 1H), 7.23 (d, J=7.3 Hz, 1H), 7.14 (td, J=8.4, 2.8 Hz, 1H), 6.41 (dd, J=20.8, 7.3 Hz, 1H), 4.95 (s, 1H), 4.58-4.46 (m, 1H), 4.18 (d, J=18.9 Hz, 1H), 4.05-3.98 (m, 2H), 3.86 (dd, J=15.5, 7.5 Hz, 2H), 3.79 (dd, J=8.3, 6.3 Hz, 1H), 3.50 (t, J=6.2 Hz, 2H), 3.42 (dd, J=14.2, 8.7 Hz, 3H), 3.28 (s, 1H), 3.12-2.98 (m, 2H), 2.73 (t, J=6.2 Hz, 2H), 2.60 (ddd, J=15.0, 9.5, 5.5 Hz, 2H), 2.51-2.38 (m, 1H), 2.08 (ddd, J=14.9, 8.4, 4.6 Hz, 3H), 1.90 (dd, J=11.8, 5.7 Hz, 2H), 1.80-1.60 (m, 4H).
  • Compound 19-E2: LC/MS ESI 498.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.51-7.46 (m, 1H), 7.42 (dd, J=10.1, 2.7 Hz, 1H), 7.23 (d, J=7.3 Hz, 1H), 7.13 (td, J=8.4, 2.8 Hz, 1H), 6.43 (d, J=7.3 Hz, 1H), 4.94 (s, 1H), 4.17 (dd, J=19.1, 11.5 Hz, 2H), 4.11-4.03 (m, 1H), 3.95-3.80 (m, 3H), 3.76-3.68 (m, 1H), 3.52-3.46 (m, 3H), 3.43-3.37 (m, 2H), 3.26 (d, J=12.5 Hz, 1H), 3.13-2.99 (m, 2H), 2.73 (t, J=6.2 Hz, 2H), 2.60 (t, J=7.2 Hz, 2H), 2.42-2.29 (m, 1H), 2.07 (dtd, J=42.5, 12.5, 7.8 Hz, 4H), 1.94-1.86 (m, 2H), 1.78-1.69 (m, 2H), 1.68-1.58 (m, 3H).
  • Compound 19-E3: LC/MS ESI 498.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.52-7.39 (m, 2H), 7.23 (d, J=7.3 Hz, 1H), 7.13 (td, J=8.4, 2.8 Hz, 1H), 6.42 (t, J=10.9 Hz, 1H), 4.87-4.81 (m, 1H), 4.17 (s, 1H), 4.04 (ddt, J=33.6, 28.5, 7.3 Hz, 3H), 3.88 (dd, J=15.7, 7.6 Hz, 1H), 3.79 (dd, J=8.2, 6.2 Hz, 1H), 3.56-3.51 (m, 1H), 3.46-3.34 (m, 4H), 3.16 (ddd, J=16.9, 15.7, 6.6 Hz, 3H), 2.73 (t, J=6.2 Hz, 2H), 2.62 (dd, J=16.3, 7.8 Hz, 2H), 2.48 (d, J=7.6 Hz, 1H), 2.18-2.12 (m, 2H), 2.09-2.01 (m, 1H), 1.92-1.86 (m, 2H), 1.75 (dd, J=12.1, 7.4 Hz, 2H), 1.68-1.60 (m, 2H).
  • Compound 19-E4: LC/MS ESI 498.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.46 (ddd, J=13.0, 9.5, 4.3 Hz, 2H), 7.24 (d, J=7.3 Hz, 1H), 7.13 (td, J=8.4, 2.8 Hz, 1H), 6.43 (d, J=7.3 Hz, 1H), 4.86 (s, 1H), 4.23-4.14 (m, 2H), 4.09 (td, J=8.3, 4.6 Hz, 1H), 3.98 (dd, J=14.8, 7.4 Hz, 1H), 3.86 (dd, J=15.9, 7.7 Hz, 1H), 3.71 (dd, J=8.6, 6.5 Hz, 1H), 3.54 (dt, J=9.1, 6.1 Hz, 1H), 3.46-3.35 (m, 4H), 3.25-3.08 (m, 3H), 2.73 (t, J=6.2 Hz, 2H), 2.69-2.54 (m, 2H), 2.39 (d, J=7.8 Hz, 1H), 2.16 (d, J=3.6 Hz, 2H), 2.02 (dq, J=12.4, 7.8 Hz, 1H), 1.95-1.83 (m, 2H), 1.75 (dd, J=12.3, 7.4 Hz, 2H), 1.62 (dd, J=13.6, 7.0 Hz, 2H).
    • Example 20: Preparation of 2-(2-cyclopropoxy-5-fluorophenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Compounds 20-E1 and 20-E2) Step 1: 2-bromo-1-cyclopropoxy-4-fluorobenzene
  • Figure US20200071322A1-20200305-C00292
  • A mixture of 2-bromo-4-fluorophenol (250 mg, 1.31 mmol), bromocyclopropane (792 mg, 6.54 mmol), NaI (2 mg, 0.013 mmol) and K2CO3 (543 mg, 3.93 mmol) in DMF (4 mL) was stirred and heated to 150° C. under microwave irradiation (Biotage) for 2 hours. The reaction mixture was diluted with water (10 mL) and ethyl acetate (10 mL), the organic layer was separated and the aqueous layer was extracted with ethyl acetate (10 mL×3). The combined organic layers were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed (Combiflash), using EtOAc/petroleum ether (1:10) as eluent, to give 2-bromo-1-cyclopropoxy-4-fluorobenzene (50 mg, 16.5%)1H NMR (500 MHz, CDCl3) δ 7.28-7.22 (m, 1H), 7.18 (dd, J=9.1, 4.9 Hz, 1H), 7.03-6.94 (m, 1H), 3.76 (tt, J=5.9, 3.1 Hz, 1H), 0.87-0.69 (m, 4H).
    • Step 2: 2-cyclopropoxy-5-fluorophenylboronic acid
  • Figure US20200071322A1-20200305-C00293
  • To a solution of 2-bromo-1-cyclopropoxy-4-fluorobenzene (250 mg, 1.08 mmol) in THF (15 mL) at −78° C. under Ar was added nBuLi (0.87 mL, 2.16 mmol, 2.5 M in THF). The mixture was stirred for 0.5 h, then triisopropyl borate (224 mg, 1.19 mmol) was slowly added via syringe. The mixture was stirred continuously for 2 h at −78° C., then quenched by the addition of saturated aqueous NH4Cl solution (5 mL). The mixture was allowed to warm to room temperature and partitioned between water (10 mL) and ethyl acetate (10 mL). The organic layer was separated and the aqueous layer was extracted with ethyl acetate (15 mL×3), washed with brine and dried over anhydrous Na2SO4. The organic phase was concentrated to dryness to give 2-bromo-1-cyclopropoxy-4-fluorobenzene (70 mg, yield 33.0%)
    • Step 3 2-(2-cyclopropoxy-5-fluorophenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Compounds 20-E1 and 20-E2)
  • Figure US20200071322A1-20200305-C00294
  • A mixture of (R)-7-(5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (60 mg, 0.22 mmol), 2-cyclopropoxy-5-fluorophenylboronic acid (47 mg, 0.24 mmol) and 2-oxoacetic acid (18 mg, 0.24 mmol) in MeCN (4 mL) was stirred for 2 hours. The residue was chromatographed using semi-preparative reversed-phase HPLC (30-65% MeCN) to give compound 20 (45 mg, 42.6%). The racemic product was separated by chiral SFC to diastereomeric products compound 20-E1 (9.3 mg) and compound 20-E2 (11.1 mg).
  • Compound 20-E1 LC/MS ESI 482.2 (M+H)+1H NMR (500 MHz, MeOD) δ 7.42 (dd, J=9.1, 4.5 Hz, 1H), 7.31 (dd, J=8.9, 2.8 Hz, 1H), 7.16 (ddd, J=20.7, 12.9, 5.2 Hz, 2H), 6.35 (d, J=7.3 Hz, 1H), 4.86 (s, 1H), 4.11-3.80 (m, 1H), 3.48-3.35 (m, 3H), 3.17 (dd, J=23.9, 15.4 Hz, 2H), 2.87 (s, 1H), 2.71 (t, J=6.3 Hz, 2H), 2.50 (t, J=7.6 Hz, 2H), 2.38-2.25 (m, 1H), 2.24-2.08 (m, 1H), 1.89 (dt, J=12.2, 6.1 Hz, 2H), 1.62 (dd, J=13.5, 7.4 Hz, 3H), 1.41 (s, 2H), 1.32 (dd, J=22.3, 9.5 Hz, 5H), 0.98-0.71 (m, 4H).
  • Compound 20-E2 LC/MS ESI 482.2 (M+H)+1H NMR (500 MHz, MeOD) δ 7.43 (dd, J=9.1, 4.5 Hz, 1H), 7.33 (dd, J=8.9, 2.9 Hz, 1H), 7.22-7.15 (m, 1H), 7.14 (d, J=7.3 Hz, 1H), 6.36 (t, J=5.8 Hz, 1H), 4.88-4.82 (m, 1H), 4.00-3.87 (m, 1H), 3.60 (s, 1H), 3.44-3.34 (m, 3H), 3.16-3.04 (m, 1H), 2.72 (dd, J=15.9, 9.5 Hz, 3H), 2.56-2.46 (m, 2H), 2.42-2.31 (m, 1H), 2.22-2.07 (m, 1H), 1.94-1.83 (m, 2H), 1.67-1.60 (m, 3H), 1.43 (s, 2H), 1.35 (d, J=4.6 Hz, 5H), 0.95-0.70 (m, 4H).
    • Example 21: Preparation of 2-(2-cyclobutylpyridin-3-yl)-2-((3R)-3-(4-(1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 21-B-E1, 21-B-E2 and 21-A) Step 1: ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((R)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B
  • Figure US20200071322A1-20200305-C00295
  • A mixture of 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer B (120 mg, 0.44 mmol), ethyl 2-chloro-2-(2-cyclobutylpyridin-3-yl)acetate (110 mg, 0.44 mmol) and diisopropylethylamine (513 mg, 3.72 mmol) in acetonitrile (8 mL) was stirred at 50° C. for 16 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((R)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B as a yellow oil (95 mg). Yield 44% (ESI 493 (M+H)+).
    • Step 2: 2-(2-cyclobutylpyridin-3-yl)-2-((3R)-3-(4-(1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (compounds 21-B-E1 and 21-B-E2)
  • Figure US20200071322A1-20200305-C00296
  • Ethyl 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((R)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B (95 mg, 0.19 mmol) was treated with LiOH—H2O (52 mg, 1.24 mmol) in MeOH (4 mL) and H2O (1 mL) at 40° C. for 4 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 21-B as a white solid (68 mg, 77% yield). The racemic product was separated by Prep chiral SFC F to give diastereomeric products compound 21-B-E1 (4 mg) and compound 21-B-E2 (6 mg) as white solids.
  • Compound 21-B-E1 LC/MS ESI 465 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.68 (m, 1H), 8.08 (d, J=9.5 Hz, 1H), 7.71 (m, 1H), 7.31 (m, 2H), 6.52 (m, 1H), 4.82 (s, 1H), 4.23 (m, 2H), 3.55-3.35 (m, 4H), 3.20 (m, 3H), 2.76 (m, 2H), 2.63-1.86 (m, 9H), 1.75-1.50 (m, 7H), Chiral SFC F: ee 100%, Rt=7.78 min.
  • Compound 21-B-E2 LC/MS ESI 465 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.58 (m, 1H), 8.08 (d, J=9.5 Hz, 1H), 7.75 (m, 1H), 7.31 (m, 2H), 6.52 (m, 1H), 4.82 (s, 1H), 4.23 (m, 2H), 3.55-3.35 (m, 4H), 3.20 (m, 3H), 2.76 (m, 2H), 2.63-1.86 (m, 9H), 1.75-1.50 (m, 7H), Chiral SFC F: ee 100%, Rt=12.02 min.
    • Step 3: 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((S)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer A (compound 21-A)
  • Figure US20200071322A1-20200305-C00297
  • 2-(2-cyclobutylpyridin-3-yl)-2-((R)-3-(4-((S)-1,2,3,4-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer A (compound 21-A) was synthesized from 2-(4-(((R)-pyrrolidin-3-yl)oxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A by the same procedures as for stereoisomer B.
  • Compound 21-A LC/MS ESI 465.3 (M+H)+ 1H NMR (500 MHz, MeOD) δ 8.56-8.54 (m, 1H), 8.08-8.01 (m, 1H), 7.72-7.70 (m, 1H), 7.32-7.29 (m, 2H), 6.56-6.52 (m, 1H), 4.82-4.73 (m, 1H), 4.30-4.18 (m, 2H), 3.78-3.35 (m, 4H), 3.28-2.95 (m, 3H), 2.81-2.28 (m, 6H), 2.24-1.88 (m, 5H), 1.74-1.48 (m, 7H).
    • Example 22: Preparation of 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 92-A-E1, 92-A-E2, 92-B-E1 and 92-B-E2) Step 1: Methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00298
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (2.4 g, 9.6 mmol) in 100 mL anhydrous MeOH was added Pd(OH)2 (100 mg) and TEA (2 mL). The mixture was stirred for 8 hours at 40° C. under an atmosphere of H2 (balloon). The catalyst was removed by filtration and the filtrate was concentrated under reduced pressure. The residue was chromatographed on silica (Combiflash) using 5-20% EtOAc/petroleum ether as eluent, to give racemic methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (2.2 g, 92%). Chiral separation using SFC (AY-H (250*4.6 mm 5 um) Mobile Phase=Hexane (0.1% DEA): EtOH (0.1% DEA)=95:5) gave stereoisomer A (identified as methyl (R)-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate, 960 mg, 43.5%) and stereoisomer B (identified as methyl (S)-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate, 904 mg, 40.7%); (ESI 253.2 (M+H)+).
    • Step 2: Methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (Stereoisomer B)
  • Figure US20200071322A1-20200305-C00299
  • LDA (25 mL, 50 mmol, 2M in THF) was added to a solution of (S)-methyl 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (stereoisomer B, 4.2 g, 16.7 mmol) in THF (100 mL) under an atmosphere of N2 at −78° C. The reaction was stirred for 0.5 h and TMSCl (5.4 g, 50 mmol) was added. After an additional 15 min, a solution of NBS (8.9 g, 50 mmol) in THF (50 mL) was added and the reaction was stirred for 0.5 h at −78° C. The reaction was diluted with water (10 mL) and extracted with ethyl acetate (50 mL×2). The combined organic phases were washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed on silica (Combiflash) using 0-20% EtOAc/petroleum ether as eluent, to give methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (stereoisomer B, 4.1 g, 74.5%); (ESI 331.3 (M+H)+.
    • Step 3: Methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (stereoisomer B)
  • Figure US20200071322A1-20200305-C00300
  • To a solution of methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (stereoisomer B, 4.1 g, 12.4 mmol) in acetonitrile (30 mL) was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (3.4 g, 12.4 mmol) and DIPEA (4.8 g, 37.2 mmol). The reaction was stirred for 1 c, diluted with water (50 mL) and extracted with ethyl acetate (50 mL×3). The combined organic phase was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed on silica (Combiflash) using 20-80% EtOAc/petroleum ether as eluent, to give methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a mixture of diastereomers (stereoisomer B, 4.9 g, 75%); (ESI 526.2 (M+H)+); 1H NMR (500 MHz, MeOD) δ 7.51 (ddd, J=20.9, 8.7, 5.9 Hz, 1H), 7.34 (dt, J=10.3, 3.4 Hz, 1H), 7.11 (d, J=7.3 Hz, 1H), 7.09-7.03 (m, 1H), 6.36 (d, J=7.3 Hz, 1H), 4.86 (m, 2H), 4.47 (m, 1H), 4.08-3.97 (m, 2H), 3.69-3.61 (m, 4H), 3.39 (m, 3H), 2.87 (m, 1H), 2.75-2.63 (m, 3H), 2.56-2.35 (m, 4H), 2.00 (m, 1H), 1.97-1.75 (m, 5H), 1.72-1.63 (m, 4H), 1.57 (m, 4H).
    • Step 4: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 92-B-E1 and 92-B-E2)
  • Figure US20200071322A1-20200305-C00301
  • To a solution of methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (stereoisomer B, 4.9 g, 9.3 mmol) in methanol (50 mL) was added LiOH (480 mg, 20 mmol) and water (20 mL). The reaction was stirred for 16 h at 25° C., filtered and concentrated under reduced pressure then purified with semi-preparative reversed-phase HPLC to give individual diastereomers (S)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid compound 92-B-E1 (1.88 g), (Yield 39.4%) and (R)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid compound 92-B-E2 (1.33 g) (Yield 27.9%).
  • Compound 92-B-E1: LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.58 (dd, J=8.8, 5.9 Hz, 1H), 7.46 (dd, J=10.0, 2.7 Hz, 1H), 7.22-7.11 (m, 2H), 6.40 (d, J=7.3 Hz, 1H), 4.90 (s, 1H), 4.77 (d, J=10.3 Hz, 1H), 4.20 (m, 1H), 4.04 (dd, J=7.5, 5.6 Hz, 1H), 3.68 (t, J=11.6 Hz, 1H), 3.62 (d, J=9.2 Hz, 1H), 3.49 (t, J=5.6 Hz, 2H), 3.42-3.35 (m, 3H), 3.23 (d, J=12.6 Hz, 1H), 3.04 (m, 1H), 2.72 (t, J=6.2 Hz, 2H), 2.57 (t, J=7.6 Hz, 2H), 2.2-1.95 (m, 4H), 1.9-1.8 (m, 2H), 1.8-1.55 (m, 8H).
  • Compound 92-B-E2: LC/MS ESI 512.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.47-7.39 (m, 2H), 7.19 (d, J=7.3 Hz, 1H), 7.11 (td, J=8.4, 2.6 Hz, 1H), 6.40 (d, J=7.3 Hz, 1H), 4.75 (d, J=11.1 Hz, 2H), 4.15 (d, J=9.4 Hz, 1H), 4.08 (s, 1H), 3.67 (t, J=10.7 Hz, 1H), 3.53-3.42 (m, 3H), 3.38 (d, J=5.3 Hz, 2H), 3.10 (m, 2H), 2.72 (t, J=6.2 Hz, 2H), 2.58 (m, 2H), 2.15 (s, 1H), 2.09 (s, 1H), 1.95 (d, J=7.8 Hz, 2H), 1.92-1.82 (m, 3H), 1.73 (m, 4H), 1.61 (m, 4H).
    • Step 5: 2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 92-A-E1 and 92-A-E2)
  • Figure US20200071322A1-20200305-C00302
  • (R)-2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid compound 92-A-E1 and (S)-2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid compound 92-A-E2 were synthesized from methyl (R)-2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)acetate (stereoisomer A) by the same procedures as for stereoisomer B.
  • Compound 92-A-E1: LC/MS ESI 512.1 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.58-7.50 (m, 2H), 7.16 (d, J=7.4 Hz, 1H), 7.11-7.04 (m, 1H), 6.38 (d, J=7.3 Hz, 1H), 4.87 (d, J=10.9 Hz, 1H), 4.62 (s, 1H), 4.11 (d, J=2.5 Hz, 1H), 4.04 (m, 1H), 3.72 (m, 1H), 3.47-3.35 (m, 5H), 3.16-3.03 (m, 2H), 2.70 (d, J=6.1 Hz, 2H), 2.58-2.50 (m, 2H), 2.16-1.95 (m, 4H), 1.90-1.85 (m, 2H), 1.73-1.65 (m, 4H), 1.64-1.56 (m, 4H).
  • Compound 92-A-E2: LC/MS ESI 512.1 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.50-7.39 (m, 2H), 7.16 (d, J=7.3 Hz, 1H), 7.09 (td, J=8.4, 2.7 Hz, 1H), 6.38 (d, J=7.3 Hz, 1H), 5.08 (s, 1H), 4.76 (d, J=11.0 Hz, 1H), 4.14 (d, J=3.5 Hz, 1H), 4.07 (d, J=12.2 Hz, 1H), 3.44 (m, 3H), 3.38 (d, J=5.5 Hz, 3H), 2.99-2.92 (m, 1H), 2.71 (t, J=6.2 Hz, 2H), 2.55 (t, J=7.5 Hz, 2H), 2.10-2.03 (m, 2H), 1.95-1.81 (m, 5H), 1.73-1.67 (m, 4H), 1.60 (m, 4H).
    • Example 23: Preparation of 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 93-A-E1, 93-A-E2, 93-B-E1 and 93-B-E2) Step 1: methyl 2-(2-bromo-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00303
  • To a solution of 2-(2-bromo-5-fluorophenyl) acetic acid (10 g, 43 mmol) in 60 mL of MeOH was added 0.5 mL H2SO4 and the mixture was heated under reflux for 4 hours. The solvent was removed under reduced pressure to give methyl 2-(2-bromo-5-fluorophenyl)acetate as an oil (10 g, yield: 94.3%) that was used without any further purification. (ESI 246.1 (M+H)+)
    • Step 2: methyl 2-(5-fluoro-2-(furan-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00304
  • To a solution of methyl 2-(2-bromo-5-fluorophenyl)acetate (5 g, 20.2 mmol) in 100 mL of DMF was added furan-2-ylboronic acid (2.72 g, 24 mmol), tris(dibenzylideneacetone) dipalladium (0) (915 mg, 1 mmol), X-Phos (476 mg, 1 mmol), and potassium phosphate (8.5 g, 40 mmol). The mixture was stirred at 60° C. for 8 hours under N2. The reaction was diluted with 200 mL ethyl acetate and 200 mL water, and the organic layer was separated. The aqueous layer was extracted with ethyl acetate three times (200 mL×3), and the combined organic layer was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed on silica (Combiflash) using 0-20% ethyl acetate/petroleum ether as eluent, to give methyl 2-(5-fluoro-2-(furan-2-yl)phenyl)acetate (3.9 g, Yield 82.7%); ESI 237.2 (M+H)+
    • Step 3: methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00305
  • To a solution of methyl 2-(5-fluoro-2-(furan-2-yl)phenyl)acetate (2.34 g, 10 mmol) in 30 mL EtOAC was added Pd/C (1 g) and DIEA (2.58 g, 20 mmol). The mixture was stirred for 5 hours at 35° C. under H2 atmosphere (balloon). After the reaction was over, the catalyst was removed by filtration, and the filtrate was concentrated under reduced pressure. The residue was chromatographed on silica (Combiflash) using 5-20% ethyl acetate/petroleum ether as eluent to give methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate (1.56 g, 66.7%) as an oil.
  • The racemic compound was separated by SFC (SFC (AY-H (250*4.6 mm 5 um) Mobile Phase:Hexane (0.1% DEA): EtOH (0.1% DEA)=95:5) to give stereoisomer A (950 mg) and stereoisomer B (920 mg) as oils; ESI 239.1 (M+H)+
    • Step 4: Methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00306
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer A (250 mg, 1.05 mmol) in 10 mL dry THF under N2 at −78° C. was added LDA (1.25 mL, 2.5 mmol, 2 M in THF). The reaction was stirred for 0.5 h and TMSCl (324 mg, 3 mmol) was added. After stirring for 15 minutes, NBS (534 mg, 3 mmol) in 10 mL THF was added and the mixture was stirred for 0.5 h at −78° C. The mixture was diluted with water and extracted with ethyl acetate (30 mL×3). The combined organic layer was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed on silica (Combiflash) using 5-20% ethyl acetate/petroleum ether as eluent to give methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer A (240 mg, 71%) as an oil; ESI 317.2 (M+H)+
    • Step 5: Methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00307
  • To a solution of methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer A (240 mg, 0.76 mmol) in 10 mL ACN was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (213 mg, 0.76 mmol) and DIPEA (295 mg, 2.28 mmol). The reaction was stirred for 4 hours, diluted with water (30 mL) water and extracted with ethyl acetate (50 mL×3). The combined organic layer was washed with brine, dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was chromatographed on silica (Combiflash) using 20-80% ethyl acetate/petroleum ether as eluent to give methyl 2-(5-fluoro-2-((S)-tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A (300 mg, 77%) as a solid; ESI 512 (M+H)+
    • Step 6: 2-(5-fluoro-2-((S)-tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (Compounds 93-A-E1 and 93-A-E2)
  • Figure US20200071322A1-20200305-C00308
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A (330 mg, 0.59 mmol) in 10 mL methanol was added LiOH (40 mg, 1.6 mmol) and water (10 mL). The reaction was stirred for 16 hours at 25° C. To the mixture was added 1 N HCl to adjust the pH to 5˜6. The mixture was concentrated under reduced pressure and the residue was purified with semi-preparative HPLC to give compound 93-A-E1 (56 mg, 18%) as a solid, and compound 93-A-E2 (45 mg, 15%) as a solid.
  • Compound 93-A-E1 ESI 498.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.58 (dd, J=8.8, 5.9 Hz, 1H), 7.45 (dd, J=10.0, 2.7 Hz, 1H), 7.18 (d, J=7.4 Hz, 1H), 7.15 (dd, J=8.4, 5.8 Hz, 1H), 6.41 (d, J=7.3 Hz, 1H), 5.22 (t, J=7.0 Hz, 1H), 4.96 (s, 1H), 4.19 (s, 1H), 4.07 (dd, J=14.4, 7.3 Hz, 1H), 3.88 (dt, J=14.1, 7.0 Hz, 1H), 3.60-3.43 (m, 3H), 3.43-3.37 (m, 2H), 3.26 (dd, J=33.4, 10.4 Hz, 2H), 3.04 (t, J=7.6 Hz, 1H), 2.72 (t, J=6.2 Hz, 2H), 2.58 (t, J=7.6 Hz, 2H), 2.44 (dt, J=12.0, 5.9 Hz, 1H), 2.16-1.93 (m, 5H), 1.92-1.86 (m, 2H), 1.75 (m, 2H), 1.68-1.56 (m, 2H)
  • Compound 93-A-E2 ESI 498.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.49 (dd, J=8.7, 5.9 Hz, 1H), 7.46 (d, J=10.3 Hz, 1H), 7.21 (d, J=7.2 Hz, 1H), 7.11 (t, J=6.9 Hz, 1H), 6.42 (d, J=7.3 Hz, 1H), 5.18 (s, 1H), 4.87-4.81 (m, 1H), 4.16 (s, 1H), 4.16-4.09 (m, 1H), 3.88 (t, J=7.1 Hz, 1H), 3.50 (t, J=6.1 Hz, 3H), 3.42-3.36 (m, 2H), 3.10 (d, J=7.6 Hz, 2H), 2.73 (t, J=6.2 Hz, 2H), 2.67-2.54 (m, 2H), 2.41 (d, J=10.7 Hz, 1H), 2.16-1.96 (m, 5H), 1.93-1.85 (m, 2H), 1.75 (m, 2H), 1.64 (m, 2H).
    • Step 7: Methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer B
  • Figure US20200071322A1-20200305-C00309
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer B (250 mg, 1.05 mmol) in 10 mL dry THF under N2 at −78° C. was added LDA (1.25 mL, 2.5 mmol, 2 M in THF). The reaction was stirred for 0.5 h and TMSCl (324 mg, 3 mmol) was added. After stirring for 15 minutes, NBS (534 mg, 3 mmol) in 10 mL, THF was added and the mixture was stirred for 0.5 h at −78° C. The mixture was diluted with water and extracted with ethyl acetate (30 mL×3). The combined organic layer was washed with brine and dried over anhydrous Na2SO4. After filtration and concentration, the residue was chromatographed on silica (Combiflash) using 5-20% ethyl acetate/petroleum ether as eluent to give methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer B (235 mg, 70.8%) as an oil; ESI 317.2) (M+H)+
    • Step 8: methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B
  • Figure US20200071322A1-20200305-C00310
  • To a solution of methyl 2-bromo-2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)acetate stereoisomer B (100 mg, 0.31 mmol) in 5 mL ACN was added (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (87 mg, 0.31 mmol) and DIPEA (120 mg, 0.93 mmol). The reaction was stirred for 4 hours, diluted with water (10 mL) water and extracted with ethyl acetate (20 mL×3). The combined organic layer was washed with brine, dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was chromatographed on silica (Combiflash) using 20-80% ethyl acetate/petroleum ether as eluent to give methyl 2-(5-fluoro-2-((S)-tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B (120 mg, 78%) as a solid; ESI 512.2 (M+H)+
    • Step 9: 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (Compounds 93-B-E1 and 93-B-E2)
  • Figure US20200071322A1-20200305-C00311
  • To a solution of methyl 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer B (300 mg, 0.59 mmol) in 10 mL methanol was added LiOH (40 mg, 1.6 mmol) and water (10 mL). The reaction was stirred for 16 hours at 25° C. To the mixture was added 1 N HCl to adjust the pH to 5-6. The mixture was concentrated under reduced pressure, and the residue was purified with semi-preparative HPLC to give compound 93-B-E1 (27 mg, 9%) as a solid, and compound 93-B-E2 (30 mg, 10%) as a solid.
  • Compound 93-B-E1 ESI 498.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.58 (dd, J=8.8, 6.0 Hz, 1H), 7.48 (d, J=10.1 Hz, 1H), 7.17 (dd, J=20.5, 7.7 Hz, 2H), 6.41 (d, J=7.3 Hz, 1H), 5.29 (t, J=7.1 Hz, 1H), 4.9 (s, 1H), 4.17 (s, 1H), 4.08 (dd, J=14.6, 7.2 Hz, 1H), 3.89 (dd, J=13.8, 7.8 Hz, 1H), 3.60-3.38 (m, 5H), 3.16 (d, J=7.5 Hz, 1H), 2.72 (t, J=6.2 Hz, 2H), 2.59 (dd, J=14.4, 7.2 Hz, 2H), 2.48 (dd, J=11.9, 5.2 Hz, 1H), 2.18 (s, 2H), 2.12-1.99 (m, 2H), 2.01-1.85 (m, 4H), 1.74 (m, 2H), 1.64 (m, 2H).
  • Compound 93-B-E2 ESI 498.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.49 (dd, J=8.7, 5.8 Hz, 1H), 7.44 (d, J=10.1 Hz, 1H), 7.19 (d, J=7.3 Hz, 1H), 7.12 (t, J=7.0 Hz, 1H), 6.41 (d, J=7.3 Hz, 1H), 5.12 (s, 1H), 4.97 (s, 1H), 4.18 (s, 1H), 4.14-4.08 (m, 1H), 3.86 (t, J=6.9 Hz, 1H), 3.48 (t, J=6.2 Hz, 3H), 3.42-3.38 (m, 3H), 3.19 (s, 1H), 3.04 (s, 1H), 2.73 (t, J=6.3 Hz, 2H), 2.58 (t, J=6.2 Hz, 2H), 2.37 (s, 1H), 2.17-1.99 (m, 5H), 1.94-1.84 (m, 2H), 1.74 (m, 2H), 1.64 (m, 2H).
    • Example 24: Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetic acid (compounds 94-E1 and 94-E2) Step 1: (R)-tert-butyl 3-(allyloxymethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00312
  • A mixture of (R)-tert-butyl 3-(hydroxymethyl)pyrrolidine-1-carboxylate (5 g, 24.8 mmol) and NaH (1.09 g, 27.3 mmol) in DMF (20 mL) was stirred at 0° C. for 1 hour. A solution of 3-bromoprop-1-ene (4.5 g, 37.2 mmol) in DMF (10 mL) was added dropwise to the above mixture at 0° C., and the reaction mixture was stirred at 50° C. overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether:EtOAc 1:1) to give the desired product as a colorless oil (5.1 g). Yield 85% (ESI 186 (M+H−56)+).
    • Step 2: (R)-tert-butyl 3-((3-(1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00313
  • To a solution of (R)-tert-butyl 3-(allyloxymethyl)pyrrolidine-1-carboxylate (600 mg, 2.49 mmol) in THF (dry, 5 mL) under Ar, was added 9-BBN (0.5M solution in THF, 9.95 mL, 4.97 mmol). The reaction was stirred at 50° C. for 2 hours, then cooled to rt. This solution was added to a mixture of 2-bromo-1,8-naphthyridine (520 mg, 2.49 mmol), cesium carbonate (2.44 g, 7.47 mmol) and Pd(PPh3)4 (144 mg, 0.125 mmol) in 1,4-Dioxane (10 mL). The reaction was stirred at 90° C. for 1.5 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH 30:1) to give the desired product (R)-tert-butyl 3-((3-(1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate as a yellow oil (200 mg). Yield 22% (ESI 372 (M+H)+).
    • Step 3: (R)-tert-butyl 3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00314
  • A mixture of (R)-tert-butyl 3-((3-(1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate (200 mg, 0.54 mmol) and Pd/C (40 mg, 20 Wt %) in ethyl acetate (10 mL) was stirred under H2 balloon at 40° C. for 16 hours. The solid was removed by filtration, the filtrate was concentrated in vacuo to give the desired product (R)-tert-butyl 3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate as a yellow oil (200 mg). Yield 99% (ESI 376 (M+H)+).
    • Step 4: (R)-7-(3-(pyrrolidin-3-ylmethoxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Figure US20200071322A1-20200305-C00315
  • (R)-tert-butyl 3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidine-1-carboxylate (200 mg, 0.53 mmol) was treated with HCl in 1,4-dioxane (4M, 10 mL) at rt for 2 hours. Solvent was removed in vacuo to give the desired product (R)-7-(3-(pyrrolidin-3-ylmethoxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine as a HCl salt (150 mg). Yield 81% (ESI 276 (M+H)+).
    • Step 5: methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00316
  • A mixture of (R)-7-(3-(pyrrolidin-3-ylmethoxy)propyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (150 mg, 0.43 mmol), methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (142 mg, 0.43 mmol) and DIPEA (166 mg, 1.29 mmol) in acetonitrile (10 mL) was stirred at rt for 3 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the desired product methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetate as a yellow oil (140 mg). Yield 62%. (ESI 526 (M+H)+).
    • Step 6: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetic acid (Compounds 94-E1 and 94-E2)
  • Figure US20200071322A1-20200305-C00317
  • Methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-((3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)methyl)pyrrolidin-1-yl)acetate (140 mg, 0.27 mmol) was treated with LiOH—H2O (126 mg, 3.0 mmol) in MeOH (4 mL) and H2O (1 mL) at room temperature for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-60% MeCN) to give diastereomeric products compound 94-E1 (17 mg) and compound 94-E2 (49 mg) as white solids.
  • Compound 94-E1 LC/MS ESI 512 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.65-7.54 (m, 2H), 7.36-7.21 (m, 2H), 6.62 (d, J=7.5 Hz, 1H), 5.06 (s, 1H), 4.77-4.75 (m, 1H), 4.11-4.08 (m, 1H), 3.81-3.33 (m, 8H), 3.25-3.14 (m, 2H), 2.95-2.66 (m, 5H), 2.37-1.58 (m, 13H).
  • Compound 94-E2 LC/MS ESI 512 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.48-7.39 (m, 2H), 7.15-7.08 (m, 2H), 6.35 (d, J=7.0 Hz, 1H), 5.25 (s, 1H), 4.73-4.71 (m, 1H), 4.14-4.12 (m, 1H), 3.81-3.33 (m, 8H), 3.25-3.14 (m, 2H), 2.73-2.56 (m, 5H), 2.18-1.52 (m, 13H).
    • Example 25: Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetic acid (compounds 95-E1 and 95-E2) Step 1: (S)-tert-butyl 3-(2-(3-methoxy-3-oxoprop-1-enyloxy)ethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00318
  • To a solution of (S)-tert-butyl 3-(2-hydroxyethyl)pyrrolidine-1-carboxylate (3.3 g, 15.5 mmol) and 4-methylmorpholine (1.85 g, 18.5 mmol) in DCM (40 mL) at room temperature, was added methyl propiolate (1.55 g, 18.5 mmol). The mixture was stirred at room temperature for 15 hours, then concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 4:1) to give (S)-tert-butyl 3-(2-(3-methoxy-3-oxoprop-1-enyloxy)ethyl)pyrrolidine-1-carboxylate as a colorless oil (4.0 g). Yield 87% (ESI 200 (M+H-Boc)+).
    • Step 2: (S)-tert-butyl 3-(2-(3-methoxy-3-oxopropoxy)ethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00319
  • A mixture of (S)-tert-butyl 3-(2-(3-methoxy-3-oxoprop-1-enyloxy)ethyl)pyrrolidine-1-carboxylate (4.0 g, 16.0 mmol) and Pd/C (10%, 200 mg) in EtOAc (25 mL) was stirred under H2 at rt overnight. The solid was removed by filtration, the filtrate was concentrated in vacuo to give the desired product (S)-tert-butyl 3-(2-(3-methoxy-3-oxopropoxy)ethyl)pyrrolidine-1-carboxylate as a yellow oil (4.0 g). Yield 96% (ESI 202 (M+H-Boc)+).
    • Step 3: (S)-tert-butyl 3-(2-(4-(dimethoxyphosphoryl)-3-oxobutoxy)ethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00320
  • To a solution of (S)-tert-butyl 3-(2-(3-methoxy-3-oxopropoxy)ethyl)pyrrolidine-1-carboxylate (1.5 g, 5.0 mmol) and dimethyl methylphosphonate (0.682 g, 5.5 mmol) in dry THF (10 mL) at 0° C. under Ar, LDA (2M in THF, 5.25 mL, 10.5 mmol) was added dropwise. After stirring at 0° C. for 10 mins, the reaction was quenched with MeOH (5 mL). The mixture was concentrated under vacuum, and the residual was purified by silica gel column (pet ether: EtOAc 2:1) to give the desired product (S)-tert-butyl 3-(2-(4-(dimethoxyphosphoryl)-3-oxobutoxy)ethyl)pyrrolidine-1-carboxylate as a yellow oil (1.1 g). Yield 57% (ESI 394 (M+H)+).
    • Step 4: (S)-tert-butyl 3-(2-(2-(1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00321
  • A mixture of 2-aminonicotinaldehyde (128 mg, 1.1 mmol), (S)-tert-butyl 3-(2-(4-(dimethoxyphosphoryl)-3-oxobutoxy)ethyl)pyrrolidine-1-carboxylate (400 mg, 1.1 mmol) and NaOH (81 mg, 2.2 mmol) in MeOH (6 mL) and H2O (2 mL) was stirred at rt overnight. Solvent was removed in vacuo, and the residue was purified by prep-HPLC A (40-70% MeCN) to give the desired product (S)-tert-butyl 3-(2-(2-(1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidine-1-carboxylate as a colorless oil (60 mg). Yield 16% (ESI 372 (M+H)+).
    • Step 5: (S)-7-(2-(2-(pyrrolidin-3-yl)ethoxy)ethyl)-1,2,3,4-tetrahydro-1,8-naphthyridine hydrochloride
  • Figure US20200071322A1-20200305-C00322
  • A mixture of (S)-tert-butyl 3-(2-(2-(1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidine-1-carboxylate (400 mg, 1.08 mmol) and Pd/C (80 mg, 10%) in EtOAc (20 mL) was stirred under H2 at room temperate overnight. The mixture was filtered and the filtrate was concentrated in vacuo. The residue was treated with a solution of HCl/dioxane (4.0 M, 4 mL) at room temperate for 2 hours, then the solvent was removed in vacuo to give the desired product (S)-7-(2-(2-(pyrrolidin-3-yl)ethoxy)ethyl)-1,2,3,4-tetrahydro-1,8-naphthyridine hydrochloride as a white solid (325 mg). Yield 96% (ESI 276.2 (M+H)+).
    • Step 6: Methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00323
  • A mixture of (S)-7-(2-(2-(pyrrolidin-3-yl)ethoxy)ethyl)-1,2,3,4-tetrahydro-1,8-naphthyridine hydrochloride (226 mg, 0.65 mmol), methyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (240 mg, 0.65 mmol) and DIEA (252 mg, 1.95 mmol) in acetonitrile (10 mL) was stirred at RT overnight. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetate as a yellow oil (310 mg). Yield 84% (ESI 526 (M+H)+).
    • Step 7: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetic acid (compounds 95-E1 and 95-E2)
  • Figure US20200071322A1-20200305-C00324
  • Methyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(2-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethoxy)ethyl)pyrrolidin-1-yl)acetate (310 mg, 0.55 mmol) was treated with LiOH—H2O (250 mg, 5.95 mmol) in MeOH (5 mL) and H2O (1 mL) at 40° C. overnight. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-60% MeCN) to give diastereomeric products compound 95-E1 (67 mg) and compound 95-E2 (37 mg) as white solids.
  • Compound 95-E1 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.62-7.55 (m, 1H), 7.54-7.50 (m, 1H), 7.20-7.10 (m, 2H), 6.35 (d, J=7.3 Hz, 1H), 4.88-4.78 (m, 2H), 4.08-4.04 (m, 1H), 3.82-3.75 (m, 1H), 3.70-3.61 (m, 3H), 3.49-3.40 (m, 3H), 3.38-3.31 (m, 2H), 3.06-2.99 (m, 1H), 2.68-2.77 (m, 5H), 2.50-2.39 (m, 1H), 2.20-1.90 (m, 3H), 1.95-1.60 (m, 9H).
  • Compound 95-E2 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.43-7.36 (m, 2H), 7.18-7.09 (m, 2H), 6.38-6.33 (d, J=7.3 Hz, 1H), 5.42 (s, 1H), 4.80-4.50 (m, 1H), 4.18-4.04 (m, 1H), 3.65-3.62 (m, 3H), 3.50-3.41 (m, 2H), 3.38-3.31 (m, 3H), 3.20-3.00 (m, 3H), 2.75-2.65 (m, 4H), 2.40-2.30 (m, 1H), 2.20-2.05 (m, 2H), 1.98-1.93 (m, 1H), 1.90-1.58 (m, 9H).
    • Example 26: Preparation of 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 96-E1 and 96-E2) Step 1: 1-(2-bromo-4-fluorophenyl)-4-methylpent-4-en-1-ol
  • Figure US20200071322A1-20200305-C00325
  • An oven dried 3-neck round bottom flask equiped with a magnetic stiring bar, cooler, nitrogen inlet and a septum was charged with magnesium (0.489 g, 20.1 mmol). The magnesium was dried using a heat gun under a nitrogen flow while stirring and then stirred under a nitrogen flow overnight. Next, dry tetrahydrofuran (12 mL) was added, and the mixture was brought to reflux using a heat gun. A small amount of 1,2-dibromoethane (0.116 mL, 1.34 mmol) was added, and the mixture was brought to reflux again. A solution of 4-bromo-2-methylbut-1-ene (1.6 mL, 13.4 mmol) in dry tetrahydrofuran (10 mL) was added dropwise at such a rate to keep an exothermic reaction going. Upon complete addition, the greyish brown reaction mixture was stirred for another 20 minutes and slowly cooled to room temperature. The Grignard reagent was drawn into a syringe and added dropwise to a solution of 2-bromo-4-fluorobenzaldehyde (2.72 g, 13.4 mmol) in dry tetrahydrofuran (15 mL) under argon atmosphere at 0° C. Upon complete addition, the mixture was allowed to come to room temperature, stirred for 30 minutes, quenched with saturated ammonium chloride and extracted twice with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 1% to 15% diisopropyl ether in heptane) afforded the desired product 1-(2-bromo-4-fluorophenyl)-4-methylpent-4-en-1-ol (1.43 g). Yield 39%. 1H NMR (400 MHz, Chloroform-d) δ 7.58-7.51 (m, 1H), 7.30-7.23 (m, 1H), 7.11-7.02 (m, 1H), 5.09-5.01 (m, 1H), 4.76 (s, 2H), 2.29-2.10 (m, 2H), 2.03 (d, J=3.6 Hz, 1H), 1.96-1.83 (m, 1H), 1.83-1.68 (m, 4H).
    • Step 2: 5-(2-bromo-4-fluorophenyl)-2,2-dimethyltetrahydrofuran
  • Figure US20200071322A1-20200305-C00326
  • To a solution of 1-(2-bromo-4-fluorophenyl)-4-methylpent-4-en-1-ol (1.43 g, 5.24 mmol) in toluene (30 mL) was added p-toluenesulfonic acid monohydrate (0.996 g, 5.24 mmol). The mixture was stirred at 80° C. for an hour, cooled to room temperature, quenched with saturated aqueous sodium bicarbonate and extracted three times with dichloromethane. The combined organic layers were dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 0% to 8% diisopropylether in heptane) afforded the desired product 5-(2-bromo-4-fluorophenyl)-2,2-dimethyltetrahydrofuran (1.28 g). Yield 89%. 1H NMR (400 MHz, Chloroform-d) δ 7.60-7.52 (m, 1H), 7.29-7.21 (m, 1H), 7.07-6.98 (m, 1H), 5.19 (t, J=7.2 Hz, 1H), 2.64-2.53 (m, 1H), 1.93-1.77 (m, 2H), 1.74-1.61 (m, 1H), 1.42 (s, 3H), 1.36 (s, 3H).
    • Step 3: tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00327
  • An oven dried flask was charged with zinc dust (1.202 g, 18.4 mmol) and heated with a heat gun under an argon flow. After cooling to room temperature, dry tetrahydrofuran (26 mL) was added, followed by 1,2-dibromoethane (0.04 mL, 0.46 mmol). The mixture was heated to reflux and cooled to room temperature 3 times. Then, trimethylsilyl chloride (0.059 mL, 0.46 mmol) was added which caused the mixture to reflux spontaneously and the zinc to change morphology. After stirring for 20 minutes, tert-butyl bromoacetate (1.34 mL, 9.19 mmol) was added dropwise, resulting in an exotherm. The mixture was kept at an elevated temperature (45° C.) for 30 minutes and then allowed to cool to room temperature. A separate flask was charged with 5-(2-bromo-4-fluorophenyl)-2,2-dimethyltetrahydrofuran (1.26 g, 4.59 mmol), tri-tert-butylphosphine tetrafluoroborate (0.147 g, 0.505 mmol) and bis-(dibenzylideneacetone)palladium (0.264 g, 0.459 mmol). The reaction vessel was flushed with argon, dry tetrahydrofuran (26 mL) was added and argon was bubbled through for five minutes. The zincate solution was added by syringe, and the reaction mixture was heated to reflux for 1 hour. The mixture was cooled to room temperature overnight, quenched with saturated aqueous ammonium chloride and extracted three times with heptane/ethyl acetate (1/1, v/v). The combined organic layers were dried over sodium sulfate and concentrated in vacuo.
  • Purification by column chromatography (silica, 1% to 6% acetone in heptane) afforded the desired product tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate (1.31 g). Yield 92%. 1H NMR (400 MHz, Chloroform-d) δ 7.51 (dd, J=8.6, 6.0 Hz, 1H), 7.00-6.88 (m, 2H), 5.10 (dd, J=8.5, 6.2 Hz, 1H), 3.57 (q, J=15.5 Hz, 2H), 2.38-2.28 (m, 1H), 1.92-1.71 (m, 3H), 1.43 (s, 9H), 1.40 (s, 3H), 1.34 (s, 3H).
    • Step 4: tert-butyl 2-bromo-2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00328
  • To a solution of tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate (200 mg, 0.65 mmol) in THF (4 mL) at −78° C., was added lithium diisopropylamide solution 1.0 M in THF/hexanes (1.3 mL, 1.3 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then chlorotrimethylsilane (141 mg, 1.3 mmol) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (231 mg, 1.3 mmol) in THF (2 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate as a colorless oil (180 mg). Yield: 72%. (ESI 387 (M+H)+).
    • Step 5: tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00329
  • A mixture of tert-butyl 2-bromo-2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)acetate (650 mg, 1.68 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (584 mg, 1.68 mmol) and DIPEA (650 mg, 5.04 mmol) in acetonitrile (20 mL) was stirred at rt for 3 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the desired product tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a yellow oil (550 mg). Yield 56%. (ESI 582 (M+H)+).
    • Step 6: 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 96-E1 and 96-E2)
  • Figure US20200071322A1-20200305-C00330
  • Tert-butyl 2-(2-(5,5-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (550 mg, 0.95 mmol) was treated with HCl in 1,4-dioxane (4M, 10 mL) at 25° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (33-65% MeCN) to give 96 as a white solid (220 mg, 44% yield). The racemic product was separated by Prep chiral SFC E to give diastereomeric products 96-E1 (44 mg) and 96-E2 (49 mg) as white solids, each as a mixture of 2 stereoisomers.
  • Compound 96-E1 (mixture of 2 stereoisomers) LC/MS ESI 526 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.65-7.61 (m, 1H), 7.48 (dd, J=10 Hz, 2.5 Hz, 1H), 7.18-7.15 (m, 2H), 6.39 (d, J=7.5 Hz, 1H), 5.42 (m, 1H), 4.85 (s, 1H), 4.20 (s, 1H), 3.49-3.36 (m, 5H), 3.22-3.18 (m, 2H), 2.73-2.52 (m, 5H), 2.21-1.87 (m, 7H), 1.75-1.61 (m, 4H), 1.45-1.36 (m, 7H). Chiral SFC E (45% MeOH): ee 100%, Rt=3.49 min
  • Compound 96-E2 (mixture of 2 stereoisomers) LC/MS ESI 526 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.65-7.61 (m, 1H), 7.45 (dd, J=10 Hz, 2.5 Hz, 1H), 7.18-7.16 (m, 2H), 6.39 (d, J=7.5 Hz, 1H), 5.35 (m, 1H), 4.97 (s, 1H), 4.20 (s, 1H), 3.54-3.36 (m, 5H), 3.22-3.05 (m, 2H), 2.73-2.50 (m, 5H), 2.22-1.88 (m, 7H), 1.76-1.62 (m, 4H), 1.41-1.36 (m, 7H). Chiral SFC E (45% MeOH): ee 98%, Rt=4.52 min.
    • Example 27: Preparation of 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 97-A-E1, 97-A-E2, 97-B-E1 and 97-B-E2) Step 1: 4,4-dimethyltetrahydro-2H-pyran-2-one
  • Figure US20200071322A1-20200305-C00331
  • To a suspension of Lithium aluminum hydride (220 mg, 5.79 mmol) in THF (dry, 15 mL) at -55° C., was added a solution of 4,4-dimethyldihydro-2H-pyran-2,6(3H)-dione (1.42 g, 10.0 mmol) in THF (10 mL) dropwise. The reaction was gradually warmed to 0° C. and stirred for 20 min, then cooled to −15° C., added aqueous HCl (6 N, 4 mL) dropwise to quench the reaction. The mixture was extracted with ether (3×15 mL), and the combined organic layers were dried over Na2SO4. The solvent was removed in vacuo to afford the desired product 4,4-dimethyltetrahydro-2H-pyran-2-one as a oil (0.91 g, 71% yield). 1H NMR (400 MHz, CDCl3) δ4.40 (t, J=6.0 Hz, 2H), 2.35 (s, 2H), 1.75 (t, J=6.0 Hz, 2H), 1.10 (s, 6H).
    • Step 2: 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran-2-ol
  • Figure US20200071322A1-20200305-C00332
  • To a solution of 1-bromo-2-iodobenzene (727 mg, 2.58 mmol) in THF (15 mL) at −25° C. was added isopropylmagnesium chloride solution (2M in THF, 1.3 mL, 2.6 mmol) dropwise. The reaction mixture was stirred at −25° C. for 1 hour, then added a solution of 4,4-dimethyltetrahydro-2H-pyran-2-one (300 mg, 2.34 mmol) in THF (3 mL) dropwise at −25° C. The reaction mixture was warmed to RT in 1 hour, quenched with MeOH (5 mL) and concentrated in vacuum. The residue was purified by silica gel column (pet ether: EtOAc 4:1) to give the desired product 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran-2-ol as a yellow oil (130 mg). Yield 18% (ESI 285/287 [M+H]+).
    • Step 3: 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran
  • Figure US20200071322A1-20200305-C00333
  • To a solution of 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran-2-ol (130 mg, 0.46 mmol) and TFA (0.23 mL) in DCM (6 mL) at 0° C., was added Et3SiH (267 mg, 2.3 mmol) dropwise. The reaction mixture was stirred at rt for 1 hour, then quenched with sat. NaHCO3 solution (20 mL), extracted with DCM (3×10 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated under vacuum. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran as a yellow oil (90 mg). Yield 78% (ESI 269/271 [M+H]+).
    • Step 4: tert-butyl 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00334
  • A mixture of 2-(2-bromophenyl)-4,4-dimethyltetrahydro-2H-pyran (180 mg, 0.68 mmol), (2-tert-butoxy-2-oxoethyl)zinc(II) bromide solution (0.5M in THF, 6.8 mL, 3.4 mmol), Pd2(dba)3 (35 mg, 0.034 mmol) and Q-phos (25 mg, 0.034 mmol) in THF (2 mL) was stirred at 80° C. for 2 hours. Then the reaction mixture was poured into sat. NaHCO3 solution (50 mL), extracted with EtOAc (3×20 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated under vacuum. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate as a red oil (150 mg). Yield 73% (ESI 327 [M+Na]+).
    • Step 5: tert-butyl 2-bromo-2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00335
  • To a solution of tert-butyl 2-(3-isopropyl-3,4-dihydro-1H-pyrano[3,4-c]pyridin-5-yl)acetate (600 mg, 2.0 mmol) in THF (10 mL) at −78° C., was added lithium diisopropylamide solution (2.0 M, 2.5 mL, 5.0 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then a solution of chlorotrimethylsilane (540 mg, 5.0 mmol) in THF (1 mL) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (890 mg, 5.0 mmol) in THF (10 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate as colorless oil (650 mg). Yield 86% (ESI 327 [M-Bu+H]+).
    • Step 6: tert-butyl 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00336
  • A mixture of tert-butyl 2-bromo-2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate (375 mg, 1.0 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (306 mg, 1.0 mmol), DIPEA (774 mg, 6.0 mmol) and NaI (50 mg) in acetonitrile (10 mL) was stirred at 40° C. for 12 hours. The mixture was diluted with water (8 mL) and EtOAc (25 mL). The organic phase was washed with brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (DCM:MeOH 20:1) to give the desired product tert-butyl 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a colorless oil (410 mg). Yield 72% (ESI 578 [M+H]+).
    • Step 7: 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 97-A-E1, 97-A-E2, 97-B-E1 and 97-B-E2)
  • Figure US20200071322A1-20200305-C00337
  • Tert-butyl 2-(2-(4,4-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (570 mg, 1.0 mmol) was treated with HCl in 1,4-dioxane (4M, 10 mL) at 25° C. for 6 hours. Solvent was removed in vacuo, and the residue was purified by prep-HPLC A (40-70% MeCN) to give 97-A (102 mg) and 97-B (130 mg). 97-A was separated by Prep chiral SFC H to give products 97-A-E1 (36 mg) and 97-A-E2 (31 mg) as white solids. 97-B was separated by Prep chiral SFC H to give products 97-B-E1 (30 mg) and 97-B-E2 (44 mg) as white solids.
  • Compound 97-A-E1 LC/MS ESI 522 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68-7.66 (m, 1H), 7.54-7.52 (m, 1H), 7.41-7.34 (m, 2H), 7.15-7.13 (m, 1H), 6.36 (d, J=7.6 Hz, 1H), 5.02-4.95 (m, 2H), 4.21-4.19 (m, 1H), 3.88-3.86 (m, 2H), 3.62-3.60 (m, 1H), 3.50-3.41 (m, 5H), 3.20-3.18 (m, 1H), 3.05-3.02 (m, 1H), 2.70-2.68 (m, 2H), 2.55-2.52 (m, 2H), 2.10-2.07 (m, 2H), 1.90-1.50 (m, 9H), 1.31-1.29 (m, 1H), 1.20 (s, 3H), 1.05 (s, 3H). Chiral SFC H (40% MeOH): ee 100%, Rt=2.81 min.
  • Compound 97-A-E2 LC/MS ESI 522 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.69-7.67 (m, 1H), 7.54-7.52 (m, 1H), 7.41-7.31 (m, 2H), 7.15-7.13 (m, 1H), 6.36 (d, J=7.6 Hz, 1H), 5.02-5.00 (m, 1H), 4.84 (s, 1H), 4.16-4.14 (m, 1H), 3.90-3.88 (m, 2H), 3.62-3.60 (m, 1H), 3.50-3.41 (m, 5H), 3.20-3.18 (m, 2H), 2.70-2.68 (m, 2H), 2.54-2.52 (m, 2H), 2.10-2.07 (m, 2H), 1.90-1.50 (m, 9H), 1.31-1.29 (m, 1H), 1.20 (s, 3H), 1.05 (s, 3H). Chiral SFC H (40% MeOH): ee 100%, Rt=3.78 min.
  • Compound 97-B-E1 LC/MS ESI 522 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68-7.66 (m, 1H), 7.54-7.52 (m, 1H), 7.41-7.34 (m, 2H), 7.15-7.13 (m, 1H), 6.36 (d, J=7.6 Hz, 1H), 5.02-4.90 (m, 2H), 4.16-4.14 (m, 1H), 3.90-3.88 (m, 2H), 3.62-3.60 (m, 1H), 3.50-3.41 (m, 5H), 3.20-3.18 (m, 1H), 3.05-3.02 (m, 1H), 2.70-2.68 (m, 2H), 2.54-2.52 (m, 2H), 2.10-2.07 (m, 2H), 1.90-1.50 (m, 9H), 1.31-1.29 (m, 1H), 1.20 (s, 3H), 1.05 (s, 3H). Chiral SFC H (40% MeOH): ee 100%, Rt=2.76 min.
  • Compound 97-B-E2 LC/MS ESI 522 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68-7.66 (m, 1H), 7.54-7.52 (m, 1H), 7.44-7.34 (m, 3H), 6.49 (d, J=7.2 Hz, 1H), 5.02-4.90 (m, 2H), 4.16-4.14 (m, 1H), 3.92-3.90 (m, 2H), 3.70-3.20 (m, 8H), 2.70-2.68 (m, 2H), 2.54-2.52 (m, 2H), 2.10-2.07 (m, 2H), 1.90-1.50 (m, 9H), 1.31-1.29 (m, 1H), 1.20 (s, 3H), 1.05 (s, 3H). Chiral SFC H (40% MeOH): ee 100%, Rt=3.85 min.
    • Example 28: Preparation of 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 98-A-E1, 98-A-E2 and 98-B) Step 1: cyanomethyl 2-bromo-4-fluorobenzoate
  • Figure US20200071322A1-20200305-C00338
  • To a solution of 2-bromo-4-fluorobenzoic acid (5.0 g, 0.23 mol) in dry DCM (20 mL) at 0° C. was added triethylamine (9.2 g, 0.69 mol) and chloroacetonitrile (3.5 g, 0.46 mol). The reaction was then heated to reflux and stirred overnight. After cooling to room temperature, the reaction mixture was washed successively with aqueous HCl (2M, 20 mL) and sat. NaHCO3 solution (20 mL). The organic phase was dried over anhydrous MgSO4 and concentrated in vacuo to afford the desired product cyanomethyl 2-bromo-4-fluorobenzoate as a pale yellow oil (4.0 g). Yield 68% (ESI 258/260 [M+H]+).
    • Step 2: 1-(2-bromo-4-fluorophenyl)-5-hydroxypentane-1,4-dione
  • Figure US20200071322A1-20200305-C00339
  • To a solution of cyanomethyl 2-bromo-4-fluorobenzoate (3.4 g, 13.2 mmol) and Ti(OiPr)4 (4.15 g, 14.6 mmol) in Et20 (70 mL) at 0° C. under argon, was added EtMgBr (28 ml, 28 mmol, 1M in THF) dropwise. After the addition of the Grignard reagent, the mixture was warmed to RT and stirred for 1 hour. The turbid yellow mixture was quenched with water (10 mL), then 1M HCl (30 mL) were added, extracted with EtOAc (3*50 mL). The combined organic phases were washed with saturated aqueous NaHCO3 and dried (MgSO4). After evaporation of the solvents, the residue was purified by silica gel column (pet ether: EtOAc 3:1) to afford the desired product 1-(2-bromo-4-fluorophenyl)-5-hydroxypentane-1,4-dione (901 mg) as a colorless oil. Yield 25% (ESI 289/271 [M+H]+).
    • Step 3: 6-(2-bromo-4-fluorophenyl)tetrahydro-2H-pyran-3-ol
  • Figure US20200071322A1-20200305-C00340
  • To a solution of 1-(2-bromo-4-fluorophenyl)-5-hydroxypentane-1,4-dione (900 mg, 3.13 mmol) in DCM (40 mL) at 0° C. was added Boron trifluroide (diethyl ether complex, 1110 mg, 7.8 mmol) dropwise. After the addition, triethylsilane (910 mg, 7.8 mmol) was added and the reaction was stirred at 0° C. for 1 hour. The reaction mixture was quenched with sat. NaHCO3 (20 mL), extracted with DCM (2*50 mL). The combined organic layers were dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 3:1) to give the desired product 6-(2-bromo-4-fluorophenyl)tetrahydro-2H-pyran-3-ol as a colorless oil (650 mg). Yield 80% (ESI 275/277 [M+H]+).
    • Step 4: 6-(2-bromo-4-fluorophenyl)dihydro-2H-pyran-3(4H)-one
  • Figure US20200071322A1-20200305-C00341
  • To a solution of 6-(2-bromo-4-fluorophenyl)tetrahydro-2H-pyran-3-ol (100 mg, 0.37 mmol) in DCM (5 mL) was added Dess-Martin Periodonane (150 mg, 0.50 mmol) in several portions. After the addition, the reaction mixture was stirred RT for 2 hours, then quenched with a solution of saturated NaHCO3 (5 mL). The organic layer was washed with brine, dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to afford the desired product 6-(2-bromo-4-fluorophenyl)dihydro-2H-pyran-3(4H)-one as a colorless oil (20 mg). Yield 20% (ESI 273/275 [M+H]+).
    • Step 5: 2-(2-bromo-4-fluorophenyl)-5-methylenetetrahydro-2H-pyran
  • Figure US20200071322A1-20200305-C00342
  • To a solution of methyltriphenylphosphonium bromide (134 mg, 0.52 mmol) in THF (3 mL) at 0° C., n-BuLi (2.5M in hexane, 0.21 mL, 0.52 mmol) was added and the reaction was stirred at 0° C. for 30 minutes, then added a solution of 6-(2-bromo-4-fluorophenyl)dihydro-2H-pyran-3(4H)-one (70 mg, 0.26 mmol) in THF (2 mL). The reaction was stirred at room temperature for 12 hours, quenched with sat. aq. NH4Cl and extracted with DCM (2*10 mL). The combined organic phase was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to afford the desired product 2-(2-bromo-4-fluorophenyl)-5-methylenetetrahydro-2H-pyran as a colorless oil (51 mg, 70% yield). 1H NMR (400 MHz, CDCl3) δ 7.52-7.50 (m, 1H), 7.27-7.25 (m, 1H), 7.05-7.01 (m, 1H), 4.89-4.88 (m, 2H), 4.75-4.73 (m, 1H), 4.37-4.34 (m, 1H), 4.20-4.17 (m, 1H), 2.50-2.46 (m, 2H), 2.15-2.10 (m, 1H), 1.52-1.50 (m, 1H).
    • Step 6: 6-(2-bromo-4-fluorophenyl)-5-oxaspiro[2.5]octane
  • Figure US20200071322A1-20200305-C00343
  • To a solution of ZnEt2 (1 M in THF, 6 mL, 6.0 mmol) in DCM (20 mL) at 0° C. was added TFA (690 mg, 6.0 mmol). The reaction was stirred at 0° C. for 0.5 hour, then CH2I2 (1.7 g, 6.0 mmol) was added dropwise. The reaction was stirred at 0° C. for 0.5 hour, then 2-(2-bromo-4-fluorophenyl)-5-methylenetetrahydro-2H-pyran (280 mg, 1.0 mmol) in DCM (1 mL) was added. The reaction mixture was stirred at rt for 2 hours, quenched with sat. NaHCO3 solution (20 mL), and the DCM layer was dried over Na2SO4. The solvent was removed in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 50:1) to give the desired product 6-(2-bromo-4-fluorophenyl)-5-oxaspiro[2.5]octane as a yellow oil (250 mg). Yield 80% (ESI 267/269 [M+H-H2O]+).
    • Step 7: tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00344
  • A mixture of 6-(2-bromo-4-fluorophenyl)-5-oxaspiro[2.5]octane (250 mg, 0.88 mmol), (2-tert-butoxy-2-oxoethyl)zinc(II) bromide solution 0.5 M in THF (10 mL, 5 mmol), Pd2(dba)3 (40 mg, 0.05 mmol) and Q-phos (31 mg, 0.05 mmol) in THF (2 mL) was stirred at 80° C. for 2 hours.
  • Then the mixture was poured into sat. NaHCO3 solution (50 mL) and EtOAc (60 mL). The mixture was filtered, the organic layer was washed with brine, dried over Na2SO4, concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate as a red oil (160 mg). Yield 53% (ESI 343 [M+Na]+).
    • Step 8: tert-butyl 2-bromo-2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00345
  • To a solution of tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate (160 mg, 0.5 mmol) in THF (5 mL) at −78° C., was added lithium diisopropylamide solution 2.0 M in THF/hexanes (0.62 mL, 1.25 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then a solution of chlorotrimethylsilane (135 mg, 1.25 mmol) in THF (1 mL) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (221 mg, 1.25 mmol) in THF (10 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate as a colorless oil (130 mg). Yield 60% (ESI 419/421 [M+Na]+).
    • Step 9: tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00346
  • A mixture of tert-butyl 2-bromo-2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)acetate (130 mg, 0.33 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (101 mg, 0.33 mmol), DIPEA (126 mg, 0.99 mmol) and NaI (50 mg) in acetonitrile (10 mL) was stirred at 40° C. for 12 hours. The mixture was diluted with water (8 mL) and EtOAc (25 mL). The organic phase was washed with brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (DCM:MeOH 20:1) to give the desired product tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a colorless oil (101 mg). Yield=52% (ESI 595 [M+H]+).
    • Step 10: 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 98-A-E1, 98-A-E2 and 98-B)
  • Figure US20200071322A1-20200305-C00347
  • A solution of tert-butyl 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (210 mg, 0.35 mmol) in TFA (2 mL) and DCM (2 mL) was stirred at room temperature for 15 hours. Then it was concentrated and purified by prep-HPLC A (40-70% MeCN) to give 98-A (106 mg) and 98-B (16 mg). 98-A was separated by Prep chiral SFC C to give products 98-A-E1 (35 mg) and 98-A-E2 (31 mg) as white solids.
  • Compound 98-A-E1 LC/MS ESI 538 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.64-7.61 (m, 1H), 7.49-7.46 (m, 1H), 7.18-7.16 (m, 2H), 6.39 (d, J=7.5 Hz, 1H), 4.93 (s, 1H), 4.82-4.85 (m, 1H), 4.19 (br s, 1H), 4.12-4.10 (m, 1H), 3.61 (m, 1H), 3.49 (t, J=6.5 Hz, 2H), 3.341-3.38 (m, 3H), 3.23 (d, J=12.5H, 1H), 3.11-3.09 (m, 2H), 2.72 (t, J=6.0 Hz, 2H), 2.56 (t, J=7.5 Hz, 2H), 2.3-2.2-(m, 1H), 2.11-2.00 (m, 4H), 1.90-1.88 (m, 2H), 1.74-1.72 (m, 2H), 1.65-1.63 (m, 2H), 1.2 (m, 1H), 0.6-0.3 (m, 4H). Chiral SFC C (20% EtOH): ee 100%, Rt=1.29 min.
  • Compound 98-A-E2 LC/MS ESI 538 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.63-7.61 (m, 1H), 7.50-7.48 (m, 1H), 7.22-7.16 (m, 2H), 6.39 (d, J=7.6 Hz, 1H), 4.82-4.80 (m, 1H), 4.20-4.12 (m, 2H), 3.60-3.32 (m, 6H), 3.30-3.05 (m, 4H), 2.75-2.55 (m, 4H), 2.25-1.58 (m, 12H), 0.58-0.30 (m, 4H). Chiral SFC C (20% EtOH): ee 100%, Rt=2.17 min.
  • Compound 98-B (mixture of 2 stereoisomers) LC/MS ESI 538 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.41-7.32 (m, 2H), 7.08-6.98 (m, 2H), 6.28-6.22 (m, 1H), 4.80-4.75 (m, 1H), 4.05-3.85 (m, 2H), 3.60-3.32 (m, 6H), 3.10-2.85 (m, 4H), 2.62-2.58 (m, 2H), 2.47-2.41 (m, 2H), 2.21-1.40 (m, 12H), 0.55-0.20 (m, 4H).
    • Example 29: Preparation of 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compounds 99-E1 and 99-E2) Step 1: 1-(2-bromo-4-fluorophenyl)cyclopropanol
  • Figure US20200071322A1-20200305-C00348
  • To a solution of 1-(2-bromo-4-fluorophenyl)ethanone (5.0 g, 23.1 mmol) and Et3N (3.51 g, 34.7 mmol) in DCM (50 mL) at 0° C. under nitrogen, was added TMSOTf (6.17 g, 27.8 mmol) dropwise via syringe over a period of 10 min. The reaction mixture was stirred at RT overnight, then quenched with saturated NaHCO3 aqueous (20 mL), extracted the aqueous with DCM (2×30 mL). The combined organic phase was washed with brine, dried over Na2SO4, filtered and concentrate in vacuo to obtain crude ether. The crude ether was dissolved in anhydrous DCM (50 mL), added diiodomethane (25.0 g, 92.4 mmol), cooled to 0° C., then added diethyl zinc (1 M in THF, 93 mL, 93 mmol) dropwise. The reaction was stirred at RT for 16 hours, then quenched with a saturated solution of NH4Cl (30 mL), extracted with DCM (2*50 mL). The combined organic phase was washed with brine, dried over Na2SO4, filtered and concentrate in vacuo to obtain crude material. The crude material was dissolved in MeOH (20 mL), followed by addition of K2CO3 (3.2 g, 23.1 mmol), then stirred at RT for 30 min. Solven was removed under vacuum, added H2O (20 mL), extracted with EtOAc (2*40 mL). The combined organic phase was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 5:1) to afford the desired product 1-(2-bromo-4-fluorophenyl)cyclopropanol as a colorless oil (3.1 g). Yield 86% (ESI 213/215 [M+H]+).
    • Step 2: ethyl 5-(2-bromo-4-fluorophenyl)-2,2-difluoro-5-oxopentanoate
  • Figure US20200071322A1-20200305-C00349
  • A mixture of 1-(2-bromo-4-fluorophenyl)cyclopropanol (100 mg, 0.44 mmol), ethyl 2-bromo-2,2-difluoroacetate (351 mg, 1.74 mmol), CuI (8.2 mg, 0.044 mmol), Phenanthroline (17.2 mg, 0.088 mmol) and K2CO3 (120 mg, 0.88 mmol) in MeCN (5 mL) was stirred at 90° C. for 17 hours. The reaction was quenched with water (10 mL), extracted with EtOAc (3*10 mL). The combined organic layers were washed with brine, dried over Na2SO4, concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 5:1) to afford the desired product ethyl 5-(2-bromo-4-fluorophenyl)-2,2-difluoro-5-oxopentanoate as a colorless oil (81 mg). Yield 53% (ESI 353/355 [M+H]+).
    • Step 3: 2-(2-bromo-4-fluorophenyl)-5,5-difluorotetrahydro-2H-pyran
  • Figure US20200071322A1-20200305-C00350
  • To a solution of ethyl 5-(2-bromo-4-fluorophenyl)-2,2-difluoro-5-oxopentanoate (100 mg, 0.28 mmol) in MeOH (5 mL) at 0° C. was added NaBH4 (44 mg, 1.12 mmol). The reaction solution was stirred at RT for 15 hours. Solven was removed under vacuum, added H2O (10 mL), extracted with DCM (3*10 mL). The combined organic phase was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was dissolved in DCM (3 mL) and triflic acid (100 mg, 0.32 mmol) was added. The reaction was stirred at RT for 15 hours, then quenched by sat. aq. NaHCO3 (5 mL), extracted with DCM (2×10 mL). The combined organic layers were washed with brine, dried over Na2SO4, concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product 2-(2-bromo-4-fluorophenyl)-5,5-difluorotetrahydro-2H-pyran a colorless oil (40 mg). Yield 47% (ESI 297/299 [M+H]+).
    • Step 4: tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00351
  • A mixture of 2-(2-bromo-4-fluorophenyl)-5,5-difluorotetrahydro-2H-pyran (800 mg, 2.93 mmol), (2-tert-butoxy-2-oxoethyl)zinc(II) bromide solution (0.5 M in THF, 30 mL, 15 mmol), Pd2(dba)3 (152 mg, 0.15 mmol) and Q-phos (105 mg, 0.15 mmol) in THF (2 mL) was stirred at 80° C. for 2 hours. The reaction mixture was poured into sat. NaHCO3 solution (20 mL) and EtOAc (30 mL). The mixture was filtered, the organic layer was washed with brine, dried over Na2SO4, concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate as a red oil (703 mg). Yield 78% (ESI 275 [M+H-tBu]+).
    • Step 5: tert-butyl 2-bromo-2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate
  • Figure US20200071322A1-20200305-C00352
  • To a solution of tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate (703 mg, 2.12 mmol) in THF (5 mL) at −78° C., was added lithium diisopropylamide solution (2M, 2.65 mL, 5.3 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then a solution of chlorotrimethylsilane (573 mg, 5.3 mmol) in THF (1 mL) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (944 mg, 5.3 mmol) in THF (10 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate as a red oil (816 mg). Yield 66% (ESI 352/354 [M+H-tBu]+).
    • Step 6: tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00353
  • A mixture of tert-butyl 2-bromo-2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)acetate (816 mg, 2.0 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (660 mg, 2.0 mmol), DIPEA (821 mg, 6.0 mmol) and NaI (50 mg) in acetonitrile (20 mL) was stirred at 40° C. for 6 hours. The mixture was diluted with water (8 mL) and EtOAc (25 mL). The organic phase was washed with brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column (DCM:MeOH 20:1) to give the desired product tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a colorless oil (710 mg). Yield 58% (ESI 604 [M+H]+).
    • Step 7: 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 99-E1 and 99-E2)
  • Figure US20200071322A1-20200305-C00354
  • To a solution of tert-butyl 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (710 mg, 1.2 mmol) in DCM (10 mL) was added TFA (10 mL). The reaction was stirred at RT for 15 hours. Then it was concentrated and purified by prep-HPLC A (40-70% MeCN) to give 99 as a white solid (400 mg, 63% yield). The racemic product was separated by Prep chiral SFC A to give diastereomeric products 99-E1 (74 mg) and 99-E2 (88 mg) as white solids.
  • Compound 99-E1 LC/MS ESI 548 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.61-7.59 (m, 1H), 7.51-7.48 (m, 1H), 7.22-7.13 (m, 2H), 6.41 (d, J=7.2 Hz, 1H), 4.99-4.90 (m, 1H), 4.80 (s, 1H), 4.19-4.17 (m, 1H), 4.01-3.80 (m, 2H), 3.50-3.35 (m, 6H), 3.20-3.18 (m, 1H), 3.02-2.98 (m, 1H), 2.81-2.79 (m, 2H), 2.62-2.59 (m, 2H), 2.30-2.01 (m, 6H), 1.82-1.80 (m, 2H), 1.75-1.60 (m, 4H). Chiral SFC A (40% MeOH): ee 100%, Rt=1.92 min.
  • Compound 99-E2 LC/MS ESI 548 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.62-7.60 (m, 1H), 7.53-7.51 (m, 1H), 7.28 (d, J=7.6 Hz, 1H), 7.17-7.14 (m, 1H), 6.44 (d, J=7.2 Hz, 1H), 4.99-4.90 (m, 1H), 4.79 (s, 1H), 4.19-4.17 (m, 1H), 4.01-3.80 (m, 2H), 3.60-3.35 (m, 6H), 3.20-3.18 (m, 2H), 2.81-2.79 (m, 2H), 2.62-2.59 (m, 2H), 2.30-2.01 (m, 6H), 1.82-1.80 (m, 2H), 1.75-1.60 (m, 4H). Chiral SFC A (40% MeOH): ee 98%, Rt=2.47 min.
    • Example 30: Preparation of 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compounds 100-E1 and 100-E2) Step 1: Ethyl 3-(2-bromophenyl)acrylate
  • Figure US20200071322A1-20200305-C00355
  • To a solution of 2-bromobenzaldehyde (5.00 g, 27.0 mmol) in THF (30 mL) was added ethyl 2-(triphenyl-15-phosphaneylidene)acetate (9.89 g, 28.4 mmol), then the mixture was stirred at 60° C. overnight. The solvent was removed in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product as a yellow oil (6.51 g). Yield 93%. 1H NMR (400 MHz, CDCl3) δ8.06 (d, 1H), 7.61 (m, 2H), 7.24-7.19 (m, 2H), 6.40 (d, 1H), 4.31-4.08 (m, 2H), 1.36-1.15 (m, 3H).
    • Step 2: 3-(2-bromophenyl)prop-2-en-1-ol
  • Figure US20200071322A1-20200305-C00356
  • To a solution of 3-(2-bromophenyl)acrylate (6.5 g, 30.7 mmol) in THF (dry, 50 mL) at 0° C., was added DIBAL-H (1 M, 61.3 mL, 61.3 mmol) dropwise. The mixture was stirred at 0° C. for 30 min, then warmed to RT for an hour. The reaction solvents was poured into aqueous HCl (1N, 200 mL) and stirred at rt overnight. The mixture was extracted with ethyl acetate (50 mL×3). The combined organic layer was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:3) to afford the desired product as a light yellow oil (5.10 g). Yield 89%. 1H NMR (400 MHz, CDCl3) δ7.59-7.30 (m, 3H), 7.18-7.08 (m, 2H), 6.34-6.30 (m, 1H), 4.37-4.27 (m, 2H).
    • Step 3: 1-bromo-2-(3-bromoprop-1-enyl)benzene
  • Figure US20200071322A1-20200305-C00357
  • To a solution of 3-(2-bromophenyl)prop-2-en-1-ol (4.80 g, 22.64 mmol) in diethyl ether (dry, 50 mL) at 0° C. was added phosphorus tribromide (1.27 mL, 9.06 mmol). The reaction was stirred at 0° C. for 1 hour, then quenched with sat. NaHCO3, extracted with diethyl ether (50 mL×2). The combined organic layers were washed with brine, dried over sodium sulfate, filtered and concentrated in vacuo to afford the desired product 1-bromo-2-(3-bromoprop-1-enyl)benzene as a yellow oil (5.20 g). Yield 79%. 1H NMR (400 MHz, CDCl3) δ7.56-7.46 (m, 2H), 7.34-7.26 (m, 2H), 6.36-6.34 (m, 1H), 4.18-4.03 (m, 2H).
    • Step 4: methyl 5-(2-bromophenyl)-2,2-dimethylpent-4-enoate
  • Figure US20200071322A1-20200305-C00358
  • To a solution of methyl isobutyrate (2.13 g, 20.88 mmol) in THF (dry, 40 mL) at −78° C. was added LDA (1 M, 20.88 mL, 20.88 mmol) dropwise. The mixture was stirred at −78° C. for 30 min, then added a solution of 1-bromo-2-(3-bromoprop-1-en-1-yl)benzene (5.20 g, 18.98 mmol) in THF (10 mL) dropwise. The reaction was stirred at −78° C. for 30 min, then warmed to RT for another 1 hour. The reaction was quenched with sat. NH4Cl and extracted with EtOAc (50 mL×3). The combined organic layers were washed with brine, dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 5:1) to afford the desired product as a yellow oil (4.36 g, 78% yield). 1H NMR (400 MHz, CDCl3) δ7.58-7.46 (m, 2H), 7.23-7.09 (m, 2H), 6.74-6.51 (m, 1H), 6.10-6.02 (m, 1H), 3.69-3.64 (m, 3H), 2.48-2.40 (m, 2H), 1.24-1.15 (m, 6H).
    • Step 5: 5-(2-bromophenyl)-2,2-dimethylpent-4-en-1-ol
  • Figure US20200071322A1-20200305-C00359
  • To a solution of methyl 5-(2-bromophenyl)-2,2-dimethylpent-4-enoate (4.36 g, 14.53 mmol) in THF (dry, 20 mL) at −78° C., was added dropwise a solution of lithium aluminium hydride in tetrahydrofuran (2.4 M, 6.66 mL, 11.80 mmol). The mixture was stirred at −78° C. for 3 hours, then quenched with 1M HCl (˜100 mL, started dropwise). The reaction was extracted with EtOAc (50 mL×3). The combined organic layers were washed with brine, dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:3) to afford the desired product as a yellow oil (3.74 g, 93% yield). ESI: 267 (M+H)+
    • Step 6: Ethyl 3-(2-bromophenyl)acrylate
  • Figure US20200071322A1-20200305-C00360
  • To a solution of 5-(2-bromophenyl)-2,2-dimethylpent-4-en-1-ol (3.74 g, 13.95 mmol) in dichloro ethane (20 mL) was added Tetrabutylammonium Hexafluorophosphate (0.27 g, 0.70 mmol) and Calcium(II) Bis(trifluoromethanesulfonyl)imide (0.22 g, 0.70 mmol). The mixture was stirred at 90° C. for 20 hours, concentrated in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to afford the desired product ethyl 3-(2-bromophenyl)acrylate as a yellow oil (1.50 g, 40% yield). 1H NMR (400 MHz, CDCl3) δ7.54 (d, J=6.8 Hz, 2H), 7.33 (t, J=8.0 Hz, 1H), 7.10 (t, J=7.2 Hz, 1H), 4.56 (d, J=9.6 Hz, 1H), 3.3 (d, J=11.2 Hz, 1H), 3.38 (d, J=11.2 Hz, 1H), 1.88-1.84 (m, 1H), 1.59-1.53 (m, 4H), 1.13 (s, 3H), 0.88 (s, 3H).
    • Step 7: butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00361
  • To a mixture of ethyl 3-(2-bromophenyl)acrylate (1.50 g, 5.60 mmol), tris(dibenzylideneacetone)dipalladium (0.29 g, 0.28 mmol) and 1, 2, 3, 4, 5-Pentaphenyl-1′-(di-tert-butylphosphino)ferrocene (0.20 g, 0.28 mmol) in THF (10 mL) was added (2-tert-butoxy-2-oxoethyl)zinc(II) bromide (1 M in THF, 28 mL, 28 mmol). The reaction was stirred at 60° C. for 2 hours. The reaction mixture was poured into sat. NaHCO3 (100 mL), extracted with EtOAc (50 mL×3). The combined organic layers were washed with brine, dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 10:1) to afford the desired product as a red oil (1.21 g, 71% yield). ESI: 249 (M-C4H9+H)+
    • Step 8: tert-butyl 2-bromo-2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00362
  • To a solution of tert-butyl butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate (1.21 g, 3.17 mmol) in THF (10 mL) at −78° C., was added lithium diisopropylamide solution 2.0 M in THF/hexanes (4.0 mL, 8.0 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then chlorotrimethylsilane (864 mg, 8.0 mmol) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (1.43 g, 8.0 mmol) in THF (10 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate as a yellow oil (1.31 g, 85% yield). ESI: 327 (M-C4H9+H)+
    • Step 9: tert-butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate
  • Figure US20200071322A1-20200305-C00363
  • A mixture of (S)-7-(4,4-difluoro-5-(pyrrolidin-3-yl)pentyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (200 mg, 0.65 mmol, 2-bromo-2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)acetate (220 mg, 0.65 mmol), DIEA (252 mg, 1.95 mmol) and NaI (19.5 mg, 0.13 mmol) in acetonitrile (10 mL) was stirred at 50° C. for 6 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 20:1) to give the desired product tert-butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate as a yellow oil (150 mg, 45% yield). ESI: 578 (M+H)+
    • Step 10: tert-butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl) acetic acid (Compounds 100-E1 and 100-E2)
  • Figure US20200071322A1-20200305-C00364
  • Tert-butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (150 mg, 0.26 mmol) was treated with a mixture of DCM (3 mL) and TFA (3 mL) at 25° C. overnight. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give the desired product tert-butyl 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl) acetic acid (Compound 100) as a white solid (96 mg, 70%). The racemic product was separated by Prep chiral SFC H to give diastereomeric products 100-E1 (29 mg) and 100-E2 (26 mg) as white solids.
  • Compound 100-E1 LC/MS ESI 522.7 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68 (d, J=8.0 Hz, 1H), 7.59 (d, J=8.0 Hz, 1H), 7.45-7.38 (m, 2H), 7.15 (d, J=8.0 Hz, 1H), 6.37 (d, J=7.2 Hz, 1H), 4.93 (s, 1H), 4.73 (d, J=8.0 Hz, 1H), 4.19 (s, 1H), 3.56-3.36 (m, 7H), 3.22-3.05 (m, 3H), 2.70 (t, J=6.0 Hz, 2H), 2.57 (t, J=6.0 Hz, 2H), 2.14-1.92 (m, 6H), 1.76-1.61 (m, 6H), 1.15 (s, 3H), 0.95 (s, 3H). Chiral SFC H (45% MeOH): ee 98%, Rt=1.54 min.
  • Compound 100-E2 LC/MS ESI 522.7 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68 (d, J=8.0 Hz, 1H), 7.59 (d, J=8.0 Hz, 1H), 7.45-7.38 (m, 2H), 7.15 (d, J=8.0 Hz, 1H), 6.37 (d, J=7.2 Hz, 1H), 4.81-4.78 (m, 2H), 4.17 (s, 1H), 3.58-3.32 (m, 8H), 3.22-3.15 (m, 2H), 2.70 (t, J=6.0 Hz, 2H), 2.55 (t, J=6.0 Hz, 2H), 2.18-1.92 (m, 6H), 1.76-1.61 (m, 6H), 1.12 (s, 3H), 0.89 (s, 3H). Chiral SFC H (45% MeOH): ee 100%, Rt=2.35 min.
    • Example 31: Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 101-A-E1, 101-A-E2, 101-B-E1 and 101-B-E2) Step 1: 4-(2,6-dichloropyridin-3-yl)but-3-en-2-one
  • Figure US20200071322A1-20200305-C00365
  • A mixture of 2,6-dichloronicotinaldehyde (25 g, 143.5 mmol) and 1-(triphenylphosphoranylidene)-2-propanone (57.2 g, 179.6 mmol) in toluene (180 mL) was stirred at 110° C. for 16 hours. The mixture was cooled to room temperature, added H2O (40 mL), extracted with ethyl acetate (3×50 mL). The combined organic layer was dried over Na2SO4, filtered, solvent was removed in vacuo. The residue was purified by silica gel column (pet ether: EtOAc 1:1) to give the desired product as a yellow solid (13.3 g). Yield 43% (ESI 216.0 (M+H)+).
    • Step 2: 4-(2,6-dichloropyridin-3-yl)butan-2-amine
  • Figure US20200071322A1-20200305-C00366
  • A mixture of 4-(2,6-dichloropyridin-3-yl)but-3-en-2-one (12 g, 55.8 mmol), NH4OAc (21.5 g, 279.1 mmol) and NaBH3CN (10.6 g, 167.4 mmol) in MeOH (100 mL) was stirred at 30° C. for 16 hours. The mixture was concentrated in vacuo, and the residue was purified by silica gel column (DCM: MeOH 40:1) to give the desired product as a yellow oil (7.94 g). Yield 58% (ESI 219.0 (M+H)+).
    • Step 3: (R)-7-chloro-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine and (S)-7-chloro-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Figure US20200071322A1-20200305-C00367
  • A mixture of 4-(2,6-dichloropyridin-3-yl)butan-2-amine (7 g, 32.1 mmol) and Cs2CO3 (52 g, 160.6 mmol) in DMF (120 mL) was stirred at 140° C. for 16 hours. The mixture was cooled to room temperature, added EtOAc (100 mL) and washed with H2O (3×100 mL). The organic layer was removed in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 1:1) to give the desired product as a yellow oil (1.9 g). Yield 32% (ESI 183.0 (M+H)+). The racemic product was separated by Prep chiral SFC B to give stereoisomer A (870 mg) and stereoisomer B (890 mg) as yellow oils.
    • Step 4: (R)-tert-butyl 7-chloro-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A
  • Figure US20200071322A1-20200305-C00368
  • A mixture of 7-chloro-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A (870 mg, 4.75 mmol), (Boc)2O (3.13 g, 14.35 mmol) and DMAP (1.75 g, 14.35 mmol) in THF (40 mL) was stirred at 60° C. for 2 hours. Solvent was removed in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product as a yellow solid (1.2 g). Yield 89% (ESI 283.0 (M+H)+).
    • Step 5: tert-butyl 7-(4-((R)-1-(tert-butoxycarbonyl)pyrrolidin-3-yloxy)butyl)-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A
  • Figure US20200071322A1-20200305-C00369
  • To a solution of (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate (512 mg, 2.13 mmol) in THF (dry, 5 mL) under Ar, was added 9-BBN (0.5M solution in THF, 8.5 mL, 4.25 mmol). The reaction was stirred at 50° C. for 2 hours, then cooled to rt, added tert-butyl 7-chloro-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A (600 mg, 2.13 mmol), tricyclohexylphosphine (60 mg, 0.21 mmol), Pd(OAc)2 (47 mg, 0.21 mmol) and NaOH (127 mg, 3.19 mmol). The mixture was stirred at 70° C. for 2 hours. Solvent was removed in vacuo and the residue was purified by silica gel column (pet ether: EtOAc 8:1) to give the desired product as a yellow solid (988 mg). Yield 95% (ESI 490.0 (M+H)+).
    • Step 6: 2-methyl-7-(4-((R)-pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A
  • Figure US20200071322A1-20200305-C00370
  • Tert-butyl 7-(4-((R)-1-(tert-butoxycarbonyl)pyrrolidin-3-yloxy)butyl)-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A (1.2 g, 2.45 mmol) was treated with HCl in 1,4-dioxane (4M, 8 mL) at 25° C. for 16 hours. Solvent was removed in vacuo to give the desired product (781.7 mg) as a white solid. Yield 88% (ESI 290.0 (M+H)+).
    • Step 7: tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00371
  • A mixture of 2-methyl-7-(4-((R)-pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A (200 mg, 0.55 mmol), tert-butyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (206 mg, 0.55 mmol) and DIPEA (178 mg, 1.38 mmol) in acetonitrile (8 mL) was stirred at 50° C. for 4 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the desired product tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A as a yellow oil (120 mg). Yield 37% (ESI 582.3 (M+H)+).
    • Step 8: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer A (compounds 101-A-E1 and 101-A-E2)
  • Figure US20200071322A1-20200305-C00372
  • To a solution of tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A (120 mg, 0.21 mmol) in DCM (2.5 mL) was added TFA (2.5 mL), then the mixture was stirred at rt for 16 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give diastereomeric products compound 101-A-E1 (40 mg) and compound 101-A-E2 (1.5 mg) as white solids.
  • Compound 101-A-E1 LC/MS ESI 526.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.62-7.58 (m, 1H), 7.46-7.43 (m, 1H) 7.28-7.18 (m, 2H), 6.45 (d, J=7.2 Hz, 1H), 5.02 (s, 1H), 4.74 (d, J=10.8 Hz, 1H), 4.21 (s, 1H), 4.01 (d, J=7.2 Hz, 1H), 3.71-3.69 (m, 1H), 3.59-3.40 (m, 5H), 3.15-3.10 (m, 1H), 2.77-2.74 (m, 2H), 2.62-2.58 (m, 2H), 2.05-1.89 (m, 5H), 1.88-1.42 (m, 10H), 1.22 (d, J=10.8 Hz, 3H).
  • Compound 101-A-E2 LC/MS ESI 526.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.46-7.41 (m, 2H), 7.31-7.29 (m, 1H) 7.16-7.13 (m, 1H), 6.47 (d, J=7.2 Hz, 1H), 5.32 (s, 1H), 4.70 (d, J=6.8 Hz, 1H), 4.19 (s, 1H), 4.10 (d, J=10.0 Hz, 1H), 3.71-3.40 (m, 4H), 3.19-3.16 (m, 3H), 2.78-2.76 (m, 2H), 2.65-2.61 (m, 2H), 2.25-2.02 (m, 2H), 2.00-1.96 (m, 3H), 1.88-1.42 (m, 10H), 1.22 (d, J=10.8 Hz, 3H).
    • Step 9: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (compounds 101-B-E1 and 101-B-E2)
  • Figure US20200071322A1-20200305-C00373
  • 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (compounds 101-B-E1 and 101-B-E2) was synthesized from tert-butyl 7-chloro-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer B by the same methods as stereoisomer A.
  • Compound 101-B-E1 LC/MS ESI 526.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.62-7.58 (m, 1H), 7.46-7.43 (m, 1H) 7.26-7.18 (m, 2H), 6.44 (d, J=7.2 Hz, 1H), 4.99 (s, 1H), 4.74 (d, J=10.4 Hz, 1H), 4.21 (s, 1H), 4.03 (d, J=10.8 Hz, 1H), 3.71-3.69 (m, 1H), 3.59-3.40 (m, 5H), 3.10 (s, 1H), 2.76-2.73 (m, 2H), 2.61-2.57 (m, 2H), 2.20-1.89 (m, 5H), 1.81-1.42 (m, 10H), 1.22 (d, J=10.8 Hz, 3H).
  • Compound 101-B-E2 LC/MS ESI 526.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.47-7.37 (m, 3H), 7.17-7.12 (m, 1H), 6.49 (d, J=7.2 Hz, 1H), 5.32 (s, 1H), 4.69 (d, J=9.2 Hz, 1H), 4.19 (s, 1H), 4.10 (d, J=10.0 Hz, 1H), 3.71-3.40 (m, 5H), 3.19-3.16 (m, 2H), 2.79-2.76 (m, 2H), 2.68-2.63 (m, 2H), 2.35-2.22 (m, 1H), 2.10-1.96 (m, 4H), 1.86-1.44 (m, 10H), 1.22 (d, J=10.8 Hz, 1H).
    • Example 32: Preparation of 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate (Compounds 102-A-E1, 102-A-E2 and 102-B) Step 1: ethyl 4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-carboxylate
  • Figure US20200071322A1-20200305-C00374
  • To a solution of diisopropylamine (3.19 mL, 22.8 mmol) in dry tetrahydrofuran (20 mL) under nitrogen atmosphere at −78° C. was added n-butyllithium in hexanes (2.5 M, 7.28 mL, 18.2 mmol). This mixture was stirred for 45 minutes at −78° C., then ethyl tetrahydropyran-4-carboxylate (2.87 mL, 19.0 mmol) was added dropwise, and the mixture was stirred for 30 minutes at −78° C. A mixture of 4-bromo-1-butene (2.5 mL, 24.6 mmol) and HMPA (1.85 mL, 10.6 mmol) in dry tetrahydrofuran (5 mL) was added dropwise. The mixture was stirred for five minutes at −78° C., taken out of the acetone/dry ice bath and stirred in an ice/water bath at 0° C. for 20 minutes, then stirred for 25 minutes at room temperature. The reaction mixture was quenched with saturated aqueous ammonium chloride and extracted three times with diethyl ether. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 3% to 15% diethyl ether in pentane) afforded the desired ethyl 4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-carboxylate (3.19 g). Yield 79%. 1H NMR (400 MHz, Chloroform-d) δ 5.82-5.69 (m, 1H), 5.04-4.91 (m, 2H), 4.19 (q, J=7.1 Hz, 2H), 3.87-3.78 (m, 2H), 3.53-3.39 (m, 2H), 2.14-2.05 (m, 2H), 2.02-1.92 (m, 2H), 1.66-1.59 (m, 2H), 1.55-1.45 (m, 2H), 1.28 (t, J=7.1 Hz, 3H).
    • Step 2: (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methanol
  • Figure US20200071322A1-20200305-C00375
  • To a solution of ethyl 4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-carboxylate (3.17 g, 14.9 mmol) in dry tetrahydrofuran (30 mL) under argon atmosphere at 0° C. was added lithium aluminium hydride in tetrahydrofuran (2.4 M, 6.22 mL, 14.9 mmol). The mixture was stirred at room temperature for 1 hour and quenched by slow addition of ethyl acetate (20 mL). The mixture was washed with 1M hydrochloric acid, the layers were separated and the water layer was extracted with ethyl acetate. The combined organic layers were washed with 1M hydrochloric acid and brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 15% to 50% ethyl acetate in heptane afforded the desired product (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methanol (2.21 g). Yield 87%. 1H NMR (400 MHz, Chloroform-d) δ 5.91-5.78 (m, 1H), 5.10-4.92 (m, 2H), 3.76-3.60 (m, 4H), 3.53 (s, 2H), 2.09-1.98 (m, 2H), 1.59-1.48 (m, 4H), 1.48-1.40 (m, 2H), 1.36 (br. s, 1H).
    • Step 3: (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate
  • Figure US20200071322A1-20200305-C00376
  • To a solution of (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methanol (1.75 g, 10.3 mmol) in dichloromethane (39 mL) at 0° C. was added pyridine (2.5 mL, 30.9 mmol) and p-toluenesulfonyl chloride (3.14 g, 16.5 mmol). The reaction mixture was stirred at room temperature for 4 days, concentrated in vacuo, diluted saturated aqueous sodium hydrogen carbonate and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 10 to 30% ethyl acetate in heptane) afforded the desired product (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.15 g). Yield 94%. 1H NMR (400 MHz, Chloroform-d) δ 7.84-7.75 (m, 2H), 7.36 (d, J=8.0 Hz, 2H), 5.78-5.64 (m, 1H), 5.00-4.89 (m, 2H), 3.88 (s, 2H), 3.67-3.47 (m, 4H), 2.46 (s, 3H), 1.90-1.79 (m, 2H), 1.56-1.47 (m, 2H), 1.44 (t, J=5.6 Hz, 4H).
    • Step 4: (4-(3-oxopropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate
  • Figure US20200071322A1-20200305-C00377
  • To a solution of (4-(but-3-en-1-yl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.15 g, 9.70 mmol) in tetrahydrofuran (74 mL) and water (24 mL) was added sodium periodate (5.19 g, 24.3 mmol) and osmium tetroxide solution (4 wt % in water, 9.9 mg, 0.04 mmol). The mixture was stirred at room temperature for 1.5 hours, diluted with water and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. This afforded the desired product (4-(3-oxopropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.17 g). Yield 100%. 1H NMR (400 MHz, Chloroform-d) δ 9.73 (d, J=1.7 Hz, 1H), 7.83-7.75 (m, 2H), 7.37 (d, J=8.1 Hz, 2H), 3.87 (s, 2H), 3.70-3.57 (m, 2H), 3.57-3.46 (m, 2H), 2.47 (s, 3H), 2.36-2.25 (m, 2H), 1.84-1.72 (m, 2H), 1.50-1.36 (m, 4H).
    • Step 5: (4-(3-(2-bromo-4-fluorophenyl)-3-hydroxypropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate
  • Figure US20200071322A1-20200305-C00378
  • To a solution of 2-bromo-4-fluoroiodobenzene (1.66 mL, 12.8 mmol) in dry toluene (80 mL) at −18° C. under argon atmosphere was added isopropylmagnesium chloride (2M in THF, 6.37 mL, 12.7 mmol). After stirring for 20 minutes, a solution of (4-(3-oxopropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.2 g, 9.8 mmol) in dry tetrahydrofuran (50 mL) was added. The mixture was allowed to come to room temperature overnight, then quenched by pouring it into saturated aqueous ammonium chloride and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 15% to 55% ethyl acetate in heptane) afforded the desired product (4-(3-(2-bromo-4-fluorophenyl)-3-hydroxypropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.1 g). Yield 63%. 1H NMR (400 MHz, Chloroform-d) δ 7.78 (d, J=8.0 Hz, 2H), 7.54-7.46 (m, 1H), 7.34 (d, J=8.0 Hz, 2H), 7.31-7.23 (m, 1H), 7.11-7.01 (m, 1H), 4.98-4.89 (m, 1H), 3.86 (s, 2H), 3.65-3.47 (m, 4H), 2.45 (s, 3H), 2.10 (d, J=4.0 Hz, 1H), 1.80-1.36 (m, 8H).
    • Step 6: 3-(2-bromo-4-fluorophenyl)-2,9-dioxaspiro[5.5]undecane
  • Figure US20200071322A1-20200305-C00379
  • To a solution of (4-(3-(2-bromo-4-fluorophenyl)-3-hydroxypropyl)tetrahydro-2H-pyran-4-yl)methyl 4-methylbenzenesulfonate (3.1 g, 6.2 mmol) in dry tetrahydrofuran (250 mL) under argon atmosphere at room temperature was added sodium hydride (60% dispersion in mineral oil, 0.37 g, 9.3 mmol). The mixture was stirred at room temperature overnight, quenched with saturated aqueous ammonium chloride and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 2% to 12% ethyl acetate in heptane) afforded the desired product 3-(2-bromo-4-fluorophenyl)-2,9-dioxaspiro[5.5]undecane (844 mg). Yield 42%. 1H NMR (400 MHz, Chloroform-d) δ 7.54-7.47 (m, 1H), 7.29-7.22 (m, 1H), 7.09-7.00 (m, 1H), 4.64-4.50 (m, 1H), 4.10-4.02 (m, 1H), 3.80-3.57 (m, 4H), 3.36 (d, J=11.5 Hz, 1H), 2.02-1.83 (m, 3H), 1.77-1.67 (m, 1H), 1.60-1.44 (m, 2H), 1.43-1.31 (m, 2H).
  • A racemic mixture of 3-(2-bromo-4-fluorophenyl)-2,9-dioxaspiro[5.5]undecane (1.165 gram) was separated by chiral preparative SFC. Apparatus: Waters Prep 100 SFC UV/MS directed system; Waters 2998 Photodiode Array (PDA) Detector; Waters Acquity QDa MS detector; Waters 2767 Sample Manager; Column: Phenomenex Lux Amylose-1 (250×21 mm, 5 μm), column temp: 35° C.; flow: 100 mL/min; ABPR: 120 bar; Eluent A: C02, Eluent B: 20 mM Ammonia in Isopropanol; Isocratic method: 5% B for 4 min; Loading: 25 mg; Detection: PDA (210-400 nm); fraction collection based on PDA TIC.
  • The first eluting fraction (stereoisomer A, 0.43 g) was isolated as a white solid, yield 37%. RT: 1.44 min, 100% ee. Apparatus: Waters Acquity UPC2 System; Column: Phenomenex Amylose-1 (100×4.6 mm, 5 μm), column temp: 35° C.; flow: 2.5 mL/min; BPR: 170 bar; Eluent A: C02, Eluent B: 20 mM Ammonia in Isopropanol; Gradient method: t=0 min 5% B, t=5 min 15% B, t=6 min 15% B. Detection: PDA (210-320 nm). The second eluting fraction (stereoisomer B, 0.43 g) was isolated as a white solid, yield 37%. RT: 1.96 min, 96% ee. Apparatus: Waters Acquity UPC2 System; Column: Phenomenex Amylose-1 (100×4.6 mm, 5 μm), column temp: 35° C.; flow: 2.5 mL/min; BPR: 170 bar; Eluent A: C02, Eluent B: 20 mM Ammonia in Isopropanol; Gradient method: t=0 min 5% B, t=5 min 15% B, t=6 min 15% B. Detection: PDA (210-320 nm).
    • Step 7: (−)-tert-butyl 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00380
  • An oven dried flask was charged with zinc dust (0.342 g, 5.22 mmol) and heated with a heat gun under an argon flow. After cooling to room temperature, dry tetrahydrofuran (6 mL) was added followed by 1,2-dibromoethane (0.011 mL, 0.13 mmol). The mixture was heated to reflux and cooled to room temperature 3 times. Then, trimethylsilyl chloride (0.017 mL, 0.13 mmol) was added which caused the mixture to reflux spontaneously and the zinc to change morphology. After stirring for 20 minutes, tert-butyl bromoacetate (0.38 mL, 2.61 mmol) was added dropwise, resulting in an exotherm. The mixture was kept at an elevated temperature (45° C.) for 30 minutes and then allowed to cool to room temperature. A separate flask was charged with 3-(2-bromo-4-fluorophenyl)-2,9-dioxaspiro[5.5]undecane stereoisomer A (0.43 g, 1.31 mmol), tri-tert-butylphosphine tetrafluoroborate (0.038 g, 0.13 mmol) and bis-(dibenzylideneacetone)palladium (0.075 g, 0.13 mmol). The reaction vessel was flushed with argon, dry tetrahydrofuran (6 mL) was added and argon was bubbled through for five minutes. The zincate solution was added by syringe, and the reaction mixture was heated to reflux for 2 hours. The mixture was cooled to room temperature overnight, quenched with saturated aqueous ammonium chloride and extracted with ethyl acetate three times. The combined organic layers were dried over sodium sulfate and concentrated in vacuo. Purification by column chromatography (silica, 0% to 15% ethyl acetate in heptane) afforded the desired product (−)-tert-butyl 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A (251 mg). Yield 53%. 1H NMR (400 MHz, Chloroform-d) δ 7.45-7.38 (m, 1H), 7.01-6.91 (m, 2H), 4.42 (dd, J=11.3, 2.4 Hz, 1H), 4.03 (dd, J=11.4, 2.7 Hz, 1H), 3.78-3.49 (m, 6H), 3.32 (d, J=11.4 Hz, 1H), 2.04-1.58 (m, 5H), 1.53-1.23 (m, 12H). Specific Optical Rotation: −41.2°, c=0.3, CHCl3, 20.3° C., 589 nm.
    • Step 8: tert-butyl 2-bromo-2-(5-fluoro-2-((S)-2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00381
  • To a solution of tert-butyl 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A (110 mg, 0.32 mmol) in THF (3 mL) at -78° C., was added lithium diisopropylamide solution 2.0 M in THF/hexanes (0.32 mL, 0.64 mmol) dropwise. The reaction was stirred at −78° C. for 30 min, then chlorotrimethylsilane (70 mg, 0.64 mmol) was added and the reaction was stirred at −78° C. for another 30 min. Then a solution of NBS (114 mg, 0.64 mmol) in THF (2 mL) was added and the reaction was stirred at −78° C. for 1 hour. The reaction was quenched with MeOH (2 mL), solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 2-bromo-2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A as a yellow oil (120 mg). Yield 85% (ESI 465.0 (M+Na)+).
    • Step 9: tert-butyl 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A
  • Figure US20200071322A1-20200305-C00382
  • A mixture of tert-butyl 2-bromo-2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)acetate stereoisomer A (120 mg, 0.27 mmol), (R)-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (94 mg, 0.27 mmol) and DIPEA (95 mg, 0.74 mmol) in acetonitrile (8 mL) was stirred at rt for 3 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the desired product tert-butyl 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A as a yellow oil (112 mg). Yield 65% (ESI 638.3 (M+H)+).
    • Step 10: 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate Stereoisomer A (Compounds 102-A-E1 and 102-A-E2)
  • Figure US20200071322A1-20200305-C00383
  • To a solution of 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate stereoisomer A (112 mg, 0.18 mmol) in DCM (5 mL) was added TFA (0.5 mL), then the mixture was stirred at RT for 18 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give diastereomeric products 102-A-E1 (20 mg) and 102-A-E2 (11 mg) as white solids.
  • Compound 102-A-E1 LC/MS ESI 582.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.61 (dd, J=8.8, 5.9 Hz, 1H), 7.46 (dd, J=10.0, 2.7 Hz, 1H), 7.17 (t, J=7.6 Hz, 2H), 6.41 (d, J=7.3 Hz, 1H), 4.93 (s, 1H), 4.75 (d, J=10.7 Hz, 1H), 4.21 (s, 1H), 3.95 (dd, J=11.2, 2.3 Hz, 1H), 3.74-3.37 (m, 11H), 3.27 (s, 1H), 3.05 (s, 1H), 2.72 (t, J=6.2 Hz, 2H), 2.58 (t, J=7.6 Hz, 2H), 2.14-1.87 (m, 7H), 1.83-1.73 (m, 4H), 1.69-1.64 (m, 2H), 1.56-1.50 (m, 1H), 1.33-1.30 (m, 2H).
  • Compound 102-A-E2 LC/MS ESI 582.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.45 (dd, J=12.3, 6.2 Hz, 2H), 7.22 (d, J=7.0 Hz, 1H), 7.17-7.10 (m, 1H), 6.42 (d, J=7.3 Hz, 1H), 5.14 (s, 1H), 4.73 (d, J=12.9 Hz, 1H), 4.17 (s, 1H), 3.96 (d, J=11.8 Hz, 1H), 3.74-3.37 (m, 11H), 3.09-3.05 (m, 2H), 2.73 (t, J=6.3 Hz, 2H), 2.63-2.59 (m, 2H), 2.17-2.07 (m, 4H), 1.92-1.63 (m, 10H), 1.35-1.31 (m, 2H).
    • Step 11: 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid Stereoisomer B (Compound 102-B)
  • Figure US20200071322A1-20200305-C00384
  • 2-(5-fluoro-2-(2,9-dioxaspiro[5.5]undecan-3-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid stereoisomer B (Compound 102-B) was prepared from 3-(2-bromo-4-fluorophenyl)-2,9-dioxaspiro[5.5]undecane stereoisomer B by the same methods as stereoisomer A.
  • Compound 102-B LC/MS ESI 582.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.63-7.60 (m, 1H), 7.50-7.47 (m, 1H), 7.25-7.17 (m, 2H), 6.43 (d, J=7.2 Hz, 1H), 4.93 (s, 1H), 4.87-4.77 (m, 1H), 4.19 (s, 1H), 3.96 (d, J=12.0 Hz, 1H), 3.71-3.39 (m, 11H), 3.21-3.18 (m, 2H), 2.73 (t, J=12.0 Hz, 2H), 2.60 (t, J=12 Hz, 2H), 2.18 (s, 2H), 2.06-2.05 (m, 1H), 1.96-1.91 (m, 4H), 1.89-1.52 (m, 7H), 1.35 (t, J=8.0 Hz, 2H).
    • Example 33: Preparation of 2-((R)-3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetic acid (compounds 123-E1 and 123-E2) Step 1: 4-(2,6-dichloropyridin-3-yl)-2-methylbut-3-yn-2-amine
  • Figure US20200071322A1-20200305-C00385
  • A solution of 2,6-dichloro-3-iodopyridine (4.48 g, 16.4 mmol) in anhydrous acetonitrile (36 mL) and triethylamine (36 mL, 259 mmol) was flushed with argon for 15 minutes. Then, 1,1-dimethyl-prop-2-ynylamine (1.78 mL, 18.0 mmol), copper(I) iodide (94 mg, 0.49 mmol) and bis(triphenylphosphine)palladium(II) dichloride (345 mg, 0.49 mmol) were added. The mixture was placed in a preheated oil bath at 60° C. for 1 hour, then cooled to room temperature, diluted with ethyl acetate, washed twice with water and with saturated aqueous sodium bicarbonate, dried over sodium sulfate and concentrated in vacuo. The residue was purified by column chromatography (silica, gradient 50% to 100% of (3% triethylamine in ethyl acetate) in heptane). to afford the desired 4-(2,6-dichloropyridin-3-yl)-2-methylbut-3-yn-2-amine (2.95 g) as a yellow-orange oil. Yield: 79%. 1H NMR (400 MHz, Chloroform-d) δ 7.66 (d, J=8.1 Hz, 1H), 7.22 (d, J=8.0 Hz, 1H), 1.70 (s, 2H), 1.51 (s, 6H).
    • Step 2: 4-(2,6-dichloropyridin-3-yl)-2-methylbutan-2-amine
  • Figure US20200071322A1-20200305-C00386
  • To a solution of 4-(2,6-dichloropyridin-3-yl)-2-methylbut-3-yn-2-amine (2.95 g, 12.9 mmol) in degassed ethanol (90 mL) was added Wilkinson's catalyst (1.19 g, 1.29 mmol). The mixture was flushed with hydrogen and stirred at 35° C. under 5 bar of hydrogen pressure for 3 days. The reaction mixture was concentrated in vacuo, and the residue was purified by column chromatography (silica, 10% to 15% ethyl acetate in heptane) to afford the desired 4-(2,6-dichloropyridin-3-yl)-2-methylbutan-2-amine (1.4 g) as a brown oil. Yield 47%. 1H NMR (400 MHz, Chloroform-d) δ 7.52 (d, J=7.9 Hz, 1H), 7.21 (d, J=7.9 Hz, 1H), 2.80-2.71 (m, 2H), 1.67-1.57 (m, 2H), 1.41 (s, 2H), 1.20 (s, 6H).
    • Step 3: 7-chloro-2,2-dimethyl-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Figure US20200071322A1-20200305-C00387
  • To a solution of 4-(2,6-dichloropyridin-3-yl)-2-methylbutan-2-amine (1.24 g, 4.2 mmol) in dry N,N-dimethylacetamide (40 mL) was added N,N-diisopropylethylamine (8.78 mL, 50.4 mmol). The mixture was heated to 120° C. for 2 days, cooled to room temperature, diluted with water (400 mL) and extracted with a 1:1 mixture of heptane and ethyl acetate three times. The combined organic extracts were washed twice with brine, dried over sodium sulfate and concentrated in vacuo. The residue was purified by column chromatography (silica, 5% to 15% ethyl acetate in heptane) to afford the desired 7-chloro-2,2-dimethyl-1,2,3,4-tetrahydro-1,8-naphthyridine (470 mg) as a light yellow oil which crystallised upon standing. Yield: 57%. 1H NMR (400 MHz, Chloroform-d) δ 7.12 (d, J=7.5 Hz, 1H), 6.48 (d, J=7.5 Hz, 1H), 4.78 (s, 1H), 2.70 (t, J=6.6 Hz, 2H), 1.67 (t, J=6.6 Hz, 2H), 1.24 (s, 6H).
    • Step 4: (R)-tert-butyl 3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate
  • Figure US20200071322A1-20200305-C00388
  • To a solution of (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate (796 mg, 3.3 mmol) in THF (dry, 3 mL) at room temperature under Ar was added 9-BBN solution (0.5M in THF, 13.2 mL, 6.6 mmol). The reaction was stirred at 50° C. for 2 hours, then cooled to room temperature. This solution was added to a mixture of 7-chloro-2,2-dimethyl-1,2,3,4-tetrahydro-1,8-naphthyridine (433 mg, 2.2 mmol), Pd(OAc)2 (25 mg, 0.11 mmol), PCy3 (62 mg, 0.22 mmol) and KOH (148 mg, 2.64 mmol) in THF (5 mL). The reaction mixture was stirred at 70° C. for 3 hours under Ar, then concentrated in vacuo, and the residue was purified by silica gel column (pet ether/EtOAc=30%-100%) to give the desired product (R)-tert-butyl 3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate as a brown oil (764 mg). Yield 86% (ESI 404.2 (M+H)+).
    • Step 5: (R)-2,2-dimethyl-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Figure US20200071322A1-20200305-C00389
  • To a solution of (R)-tert-butyl 3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidine-1-carboxylate (764 mg, 1.89 mmol) in MeOH (5 mL) was added HCl/dioxane (4M, 4.7 mL). The reaction was stirred at room temperature for 2 hours, then quenched with NH3/MeOH (7 N) to pH=7-8. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH=10:1-4:1) to give the desired product (R)-2,2-dimethyl-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine as an yellow oil (522 mg). Yield 91% (ESI 304.2 (M+H)+).
    • Step 6: tert-butyl 2-((R)-3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate
  • Figure US20200071322A1-20200305-C00390
  • A mixture of (R)-2,2-dimethyl-7-(4-(pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine (405 mg, 1.33 mmol), tert-butyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (745 mg, 2.0 mmol) and DIPEA (517 mg, 4.0 mmol) in acetonitrile (12 mL) was stirred at room temperature for 2 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM:MeOH=100:1-20:1) to give the desired product tert-butyl 2-((R)-3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate as a colorless oil (380 mg). Yield 48% (ESI 596.3 (M+H)+).
    • Step 7: 2-((R)-3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetic acid (compounds 123-E1 and 123-E2)
  • Figure US20200071322A1-20200305-C00391
  • To a solution of tert-butyl 2-((R)-3-(4-(7,7-dimethyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (380 mg, 0.64 mmol) in DCM (4.0 mL) was added TFA (4.0 mL). The mixture was stirred at room temperature for 18 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 123-E1 (168 mg) and 123-E2 (25 mg) as white solids.
  • Compound 123-E1 LC/MS ESI 540.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.60-7.56 (m, 1H), 7.48-7.44 (m, 1H), 7.25 (d, J=7.2 Hz, 1H), 7.18-7.14 (m, 1H), 6.42 (d, J=7.2 Hz, 1H), 4.91 (s, 1H), 4.76-4.75 (m, 1H), 4.19 (s, 1H), 4.04-4.02 (m, 1H), 3.71-3.24 (m, 6H), 3.06-3.03 (m, 1H), 2.74-2.74 (m, 2H), 2.60-2.56 (m, 2H), 2.14-1.98 (m, 4H), 1.79-1.62 (m, 10H), 1.26 (s, 6H).
  • Compound 123-E2 LC/MS ESI 540.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.46-7.42 (m, 2H), 7.25 (d, J=7.2 Hz, 1H), 7.13-7.10 (m, 1H), 6.42 (d, J=7.2 Hz, 1H), 5.14 (s, 1H), 4.74-4.72 (m, 1H), 4.16-4.08 (m, 2H), 3.69-3.37 (m, 4H), 3.12-3.08 (m, 2H), 2.78-2.74 (m, 2H), 2.61-2.56 (m, 2H), 2.14-2.03 (m, 2H), 1.95-1.82 (m, 3H), 1.75-1.58 (m, 9H), 1.26-1.24 (m, 6H).
    • Example 34: Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid Me-stereoisomer A (compounds 124-A-E1, 124-A-E2 and 124-B-E1) Step 1: 2,6-dichloro-4-methoxynicotinaldehyde
  • Figure US20200071322A1-20200305-C00392
  • To a solution of 2,6-dichloro-4-methoxypyridine (3.49 g, 19.6 mmol) in dry tetrahydrofuran (100 mL) at −78° C. was added n-butyl lithium (2.5 M solution in hexanes, 8.63 mL, 21.6 mmol). After 30 minutes, ethyl formate (14.2 mL, 177 mmol) was added, and the mixture was stirred at −78° C. for an additional 15 minutes. The reaction was quenched with saturated aqueous ammonium chloride, warmed to room temperature, diluted with water and extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. Purification by flash column chromatography (silica, 5% to 40% ethyl acetate in heptane) afforded the desired product 2,6-dichloro-4-methoxynicotinaldehyde (1.83 g). Yield 45%. 1H NMR (400 MHz, Chloroform-d) δ 10.40 (s, 1H), 6.94 (s, 1H), 4.02 (s, 3H).
    • Step 2: 4-(2,6-dichloro-4-methoxypyridin-3-yl)but-3-en-2-one
  • Figure US20200071322A1-20200305-C00393
  • A mixture of 2,6-dichloro-4-methoxynicotinaldehyde (4.43 g, 21.5 mmol), acetonyltriphenylphosphonium chloride (8.01 g, 22.6 mmol), potassium carbonate (5.94 g, 43.0 mmol) and 18-crown-6 (5.68 g, 21.5 mmol) in toluene (150 mL) was heated to 80° C. for 2.5 hours. The mixture was allowed to cool to room temperature, diluted with water and extracted three times with ethyl acetate. The combined organic layers were washed with water and brine, dried over sodium sulfate and concentrated in vacuo. The residue was purified by flash column chromatography (silica, 5% to 40% ethyl acetate in heptane) to afford the desired product 4-(2,6-dichloro-4-methoxypyridin-3-yl)but-3-en-2-one (3.68 g). Yield 69%. 1H NMR (400 MHz, Chloroform-d) δ 7.66 (d, J=16.6 Hz, 1H), 7.07 (d, J=16.6 Hz, 1H), 6.88 (s, 1H), 4.00 (s, 3H), 2.40 (s, 3H).
    • Step 3: 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-one
  • Figure US20200071322A1-20200305-C00394
  • A mixture of 4-(2,6-dichloro-4-methoxypyridin-3-yl)but-3-en-2-one (4.4 g, 17.9 mmol) and Wilkinson's catalyst (716 mg, 1.79 mmol) in ethanol (160 mL) was subjected to 4 Bar hydrogen pressure in an autoclave for 6 hours. The solvent was removed in vacuo, and the residue was purified by flash column chromatography (silica, 5% to 40% ethyl acetate in heptane) to afford the desired product 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-one (3.76 g). Yield 85%. 1H NMR (400 MHz, Chloroform-d) δ 6.76 (s, 1H), 3.90 (s, 3H), 3.05-2.87 (m, 2H), 2.71-2.53 (m, 2H), 2.19 (s, 3H).
    • Step 4: tert-butyl (4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-yl)carbamate
  • Figure US20200071322A1-20200305-C00395
  • A mixture of 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-one (3.74 g, 15.1 mmol) and ammonium acetate (11.64 g, 151 mmol) in methanol (100 mL) was stirred for 30 minutes. Sodium cyanoborohydride (947 mg, 15.1 mmol) was added. After 2 hours, additional sodium cyanoborohydride (1.89 g, 30.1 mmol) was added, and the mixture was stirred at room temperature for 20 hours. The reaction mixture was quenched with sodium hydroxide (20 mL, 1N solution in water), diluted with water and extracted with ethyl acetate. The aqueous phase was saturated with sodium chloride and extracted three more times with ethyl acetate. The combined organic layers were dried over sodium sulfate and concentrated in vacuo. The residue was diluted with hydrochloric acid (1N solution in water) and washed three times with ethyl acetate. The aqueous layer was concentrated in vacuo, and the residue was dissolved in 1,4-dioxane (27 mL). A solution of sodium hydroxide (1.04 g, 26.1 mmol) in water (27 mL) and di-tertbutyl-dicarbonate (3.03 mL, 13.03 mmol) were added. After 3 hours, the reaction was diluted with water and extracted three times with ethyl acetate. The combined organic layers were dried over sodium sulfate and concentrated in vacuo. The residue was purified by flash column chromatography (silica, 5% to 40% ethyl acetate in heptane) to afford the desired product tert-butyl (4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-yl)carbamate (1.48 g). Yield 28%. 1H NMR (400 MHz, Chloroform-d) δ 6.75 (s, 1H), 4.38 (s, 1H), 3.89 (s, 3H), 3.71 (s, 1H), 2.84-2.61 (m, 2H), 1.71-1.37 (m, 11H), 1.17 (d, J=6.6 Hz, 3H).
    • Step 5: 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-amine hydrochloride
  • Figure US20200071322A1-20200305-C00396
  • To a solution of tert-butyl (4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-yl)carbamate (1.48 g, 4.23 mmol) in methanol (15 mL) was added hydrochloric acid in dioxane (4 M, 30 mL, 120 mmol). After 105 minutes, the mixture was concentrated in vacuo to afford the desired product 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-amine hydrochloride (1.21 g). Yield 100%. 1H NMR (400 MHz, DMSO-d6) δ 8.07 (s, 3H), 7.28 (s, 1H), 3.95 (s, 3H), 3.22-3.09 (m, 1H), 2.75-2.59 (m, 2H), 1.88-1.72 (m, 1H), 1.65-1.51 (m, 1H), 1.26 (d, J=6.5 Hz, 3H).
    • Step 6: 7-chloro-5-methoxy-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine
  • Figure US20200071322A1-20200305-C00397
  • A mixture of 4-(2,6-dichloro-4-methoxypyridin-3-yl)butan-2-amine hydrochloride (1.59 g, 5.57 mmol) and potassium carbonate (2.31 g, 16.7 mmol) in 2-propanol (50 mL) was heated to 120° C. for 68 hours. The mixture was cooled to room temperature, diluted with water and extracted three times with ethyl acetate. The combined organic layers were dried over sodium sulfate and concentrated in vacuo to afford the desired product 7-chloro-5-methoxy-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine (1.16 grams). Yield 98%. 1H NMR (400 MHz, Chloroform-d) δ 6.19 (s, 1H), 4.65 (s, 1H), 3.80 (s, 3H), 3.55-3.38 (m, 1H), 2.77-2.65 (m, 1H), 2.51-2.35 (m, 1H), 1.99-1.86 (m, 1H), 1.55-1.39 (m, 1H), 1.21 (d, J=6.3 Hz, 3H).
  • A racemic mixture of 7-chloro-5-methoxy-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine (1.16 gram) was separated by chiral preparative SFC. Apparatus: Waters Prep 100 SFC UV/MS directed system; Waters 2998 Photodiode Array (PDA) Detector; Waters Acquity QDa MS detector; Waters 2767 Sample Manager; Column: Phenomenex Lux Amylose-1 (250×21 mm, 5 μm); Column temp: 35° C.; Flow: 70 mL/min; ABPR: 120 bar; eluent A: CO2, eluent B: 20 mM ammonia in methanol; Linear gradient: t=0 min 10% B, t=5 min 50% B; t=7.5 min 50% B; Detection: PDA (210-400 nm); Fraction collection based on PDA TIC. The first eluting fraction (stereoisomer A, 425 mg) was isolated as a white solid, yield 36%. tR: 2.078 min, 100% ee. Apparatus: Waters Acquity UPC2: Waters ACQ-ccBSM Binary Pump; Waters ACQ-CCM Convergence Manager; Waters ACQ-SM Sample Manager—Fixed Loop; Waters ACQ-CM Column Manager—30S; Waters ACQ-PDA Photodiode Array Detector; Waters ACQ-ISM Make Up Pump, Waters Acquity QDa MS Detector; Column: Phenomenex Lux Amylose-1 (100×4.6 mm, 5 μm; Column temp: 35° C.; Flow: 2.5 mL/min; ABPR: 170 bar; Eluent A: CO2, Eluent B: 20 mM ammonia in methanol; Linear gradient: t=0 min 5% B, t=5 min 50% B; t=6 min 50% B; Detection: PDA (210-400 nm). Specific Optical Rotation: −59.9°, c=0.5, methanol, 21.4° C., 589 nm.
  • The second eluting fraction (stereoisomer B, 415 mg) was isolated as a white solid, yield 35%. tR: 3.147 min, 99% ee. Apparatus: Waters Acquity UPC2: Waters ACQ-ccBSM Binary Pump; Waters ACQ-CCM Convergence Manager; Waters ACQ-SM Sample Manager—Fixed Loop; Waters ACQ-CM Column Manager—30S; Waters ACQ-PDA Photodiode Array Detector; Waters ACQ-ISM Make Up Pump, Waters Acquity QDa MS Detector; Column: Phenomenex Lux Amylose-1 (100×4.6 mm, 5 μm; Column temp: 35° C.; Flow: 2.5 mL/min; ABPR: 170 bar; Eluent A: CO2, Eluent B: 20 mM ammonia in methanol; Linear gradient: t=0 min 5% B, t=5 min 50% B; t=6 min 50% B; Detection: PDA (210-400 nm). Specific Optical Rotation: 72.4°, c=0.5, methanol, 21.5° C., 589 nm.
    • Step 7: tert-butyl 7-chloro-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A
  • Figure US20200071322A1-20200305-C00398
  • To a mixture of 7-chloro-5-methoxy-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A (190 mg, 0.89 mmol) in THF (8 mL) was added Boc2O (389 mg, 1.78 mmol) and DMAP (218 mg, 1.78 mmol). The reaction mixture was stirred at 60° C. for 16 hours, then quenched with saturated aqueous NH4Cl (20 mL) and extracted with EtOAc (3×20 mL). The combined organic phase was concentrated in vacuo, and the residue was purified by silica gel column (pet ether: EtOAc 10:1) to give the desired product tert-butyl 7-chloro-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1 (2H)-carboxylate stereoisomer A as a yellow oil (260 mg). Yield 93% (ESI 313.0 (M+H)+).
    • Step 8: tert-butyl 7-(4-((R)-1-(tert-butoxycarbonyl)pyrrolidin-3-yloxy)butyl)-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1 (2H)-carboxylate stereoisomer A
  • Figure US20200071322A1-20200305-C00399
  • To a solution of (R)-tert-butyl 3-(but-3-enyloxy)pyrrolidine-1-carboxylate (403 mg, 1.67 mmol) in THF (dry, 4 mL) was added 9-BBN solution 0.5M in THF (3.34 mL, 1.67 mmol) at room temperature under Ar. The reaction was stirred at 50° C. for 2 hours, then cooled to room temperature. This solution was added to a mixture of tert-butyl 7-chloro-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A (260 mg, 0.84 mmol), Pd(OAc)2 (10 mg, 0.042 mmol), PCy3 (23 mg, 0.084 mmol) and K3PO4.H2O (533 mg, 2.51 mmol) in THF (5 mL). The reaction mixture was stirred at 70° C. for 3 hours under Ar. Solvent was removed in vacuo, and the residue was purified by silica gel column (pet ether/EtOAc=10%-50%) to give the desired product tert-butyl 7-(4-((R)-1-(tert-butoxycarbonyl)pyrrolidin-3-yloxy)butyl)-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A as a yellow oil (350 mg). Yield 80% (ESI 520.0 (M+H)+).
    • Step 9: 5-methoxy-2-methyl-7-(4-((R)-pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A
  • Figure US20200071322A1-20200305-C00400
  • To a solution of tert-butyl 7-(4-((R)-1-(tert-butoxycarbonyl)pyrrolidin-3-yloxy)butyl)-5-methoxy-2-methyl-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxylate stereoisomer A (350 mg, 0.67 mmol, 1.0 equiv) in DCM (6 mL) was added HCl solution (4.0 M in 1,4-dioxane, 1.8 mL, 5.36 mmol) dropwise. The reaction was stirred at 25° C. for 16 hours, then concentrated in vacuo to give the desired product 5-methoxy-2-methyl-7-(4-((R)-pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A as a yellow oil (240 mg). Yield 93% (ESI 320.0 (M+H)+).
    • Step 10: tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate Me-stereoisomer A
  • Figure US20200071322A1-20200305-C00401
  • A mixture of 5-methoxy-2-methyl-7-(4-((R)-pyrrolidin-3-yloxy)butyl)-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer A (240 mg, 0.61 mmol), tert-butyl 2-bromo-2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)acetate (273 mg, 0.73 mmol) and DIPEA (236 mg, 1.83 mmol) in acetonitrile (8 mL) was stirred at 60° C. for 2 hours. Solvent was removed in vacuo, and the residue was purified by silica gel column (DCM: MeOH 10:1) to give the desired product tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate Me-stereoisomer A as a yellow oil (160 mg). Yield 42% (ESI 612.0 (M+H)+).
    • Step 11: 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid Me-stereoisomer A (Compounds 124-A-E1 and 124-A-E2)
  • Figure US20200071322A1-20200305-C00402
  • To a solution of tert-butyl 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetate Me-stereoisomer A (160 mg, 0.26 mmol) in DCM (5 mL) was added TFA (1 mL). The reaction was stirred at room temperature for 18 hours. Solvent was removed in vacuo, and the residue was purified by Prep-HPLC A (30-65% MeCN) to give compound 124-A-E1 (22 mg) and compound 124-A-E2 (2 mg) as white solids.
  • Compound 124-A-E1 LC/MS ESI 556.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.59-7.45 (m, 2H), 7.14-7.12 (m, 1H), 6.31 (s, 1H), 4.86 (s, 1H), 4.79 (d, J=9.0 Hz, 1H), 4.18 (s, 1H), 4.03 (d, J=11.4 Hz, 1H), 3.87 (s, 3H), 3.69-3.67 (m, 1H), 3.56-3.40 (m, 3H), 2.99-2.97 (m, 1H), 2.85-2.42 (m, 4H), 2.25-1.89 (m, 6H), 1.88-1.38 (m, 11H), 1.24 (d, J=6.3 Hz, 3H).
  • Compound 124-A-E2 LC/MS ESI 556.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.52-7.44 (m, 2H), 7.12-7.10 (m, 1H), 6.40 (s, 1H), 4.86-4.75 (m, 2H), 4.17-4.08 (m, 2H), 3.92 (s, 3H), 3.69-3.45 (m, 4H), 3.02-2.99 (m, 1H), 2.85-2.42 (m, 4H), 2.25-1.89 (m, 6H), 1.88-1.38 (m, 11H), 1.24 (d, J=6.3 Hz, 3H).
    • Step 12: Preparation of 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid Me-stereoisomer B (compound 124-B-E1)
  • Figure US20200071322A1-20200305-C00403
  • 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid Me-stereoisomer B (compound 124-B-E1) was synthesized from 7-chloro-5-methoxy-2-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine stereoisomer B by the same procedures as for stereoisomer A.
  • Compound 124-B-E1 LC/MS ESI 556.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.57-7.54 (m, 1H), 7.49-7.46 (m, 1H), 7.11-7.10 (m, 1H), 6.30 (s, 1H), 4.81 (d, J=8.0 Hz, 1H), 4.73 (s, 1H), 4.15 (s, 1H), 4.05-4.02 (d, J=12.0 Hz, 1H), 3.87 (s, 3H), 3.73-3.68 (m, 1H), 3.51-3.45 (m, 3H), 3.39-3.36 (m, 1H), 3.30-3.22 (m, 1H), 3.12-3.10 (d, J=8.0 Hz, 1H), 2.91-2.86 (m, 1H), 2.76-2.71 (m, 1H), 2.62-2.59 (t, J=12.0 Hz, 2H), 2.52-2.45 (m, 1H), 2.09-1.93 (m, 5H), 1.82-1.60 (m, 8H), 1.51-1.43 (m, 1H), 1.25-1.23 (d, J=8.0 Hz, 3H).
    • Additional Examples
  • Compounds 22-91, 103-122, and 125-129 were prepared using general procedures based on the method used to prepare compounds 1-21, 92-102, and 123-124.
    • 2-(2-(cyclopropylmethoxy)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 22-E1 and 22-E2)
  • Figure US20200071322A1-20200305-C00404
  • 22-E1 LC/MS ESI 480.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.44 (d, J=7.2 Hz, 1H), 7.22 (t, J=8.0 Hz, 1H), 7.01 (d, J=7.2 Hz, 1H), 6.92-6.83 (m, 2H), 6.25 (d, J=7.2 Hz, 1H), 4.89 (s, 1H), 4.04 (s, 1H), 3.82-3.77 (m, 2H), 3.50-3.35 (m, 6H), 2.98-2.80 (m, 2H), 2.59 (t, J=6.4 Hz, 2H), 2.41 (t, J=7.2 Hz, 2H), 1.94-1.17 (m, 9H), 0.49-0.27 (m, 4H). Chiral SFC A (45% MeOH): ee 100%, Rt=2.06 min.
  • 22-E2 LC/MS ESI 480.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.44 (d, J=6.4 Hz, 1H), 7.23 (t, J=8.0 Hz, 1H), 7.01 (d, J=7.6 Hz, 1H), 6.92-6.83 (m, 2H), 6.24 (d, J=7.6 Hz, 1H), 4.89 (s, 1H), 4.04 (s, 1H), 3.82-3.77 (m, 2H), 3.45-3.35 (m, 6H), 2.98-2.90 (m, 2H), 2.59 (t, J=6.4 Hz, 2H), 2.41 (t, J=7.2 Hz, 2H), 1.94-1.17 (m, 9H), 0.49-0.27 (m, 4H). Chiral SFC A (45% MeOH): ee 100%, Rt=4.49 min.
    • 2-(2-cyclopropyl-4-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 23-E1 and 23-E2)
  • Figure US20200071322A1-20200305-C00405
  • Compound 23-E1 LC/MS ESI 468.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.54 (d, J=8.5 Hz, 1H), 7.06 (d, J=7.3 Hz, 1H), 6.93-6.69 (m, 2H), 6.27 (d, J=7.3 Hz, 1H), 5.05 (s, 1H), 4.07 (s, 1H), 3.47-3.25 (m, 5H), 3.21-3.13 (m, 2H), 2.60 (t, J=6.2 Hz, 2H), 2.44 (t, J=7.5 Hz, 2H), 2.23-2.01 (m, 3H), 1.85-1.71 (m, 2H), 1.66-1.44 (m, 4H), 1.02-0.78 (m, 3H), 0.54-0.52 (m, 1H). Chiral SFC A (45% MeOH): ee 100%, Rt=3.11 min.
  • Compound 23-E2 LC/MS ESI 468.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.53 (d, J=8.4, 1H), 7.03 (d, J=7.3 Hz, 1H), 6.88-6.64 (m, 2H), 6.27 (d, J=7.3 Hz, 1H), 4.95 (s, 1H), 4.06 (s, 1H), 3.50-3.22 (m, 5H), 3.06-2.71 (m, 3H), 2.60 (t, J=6.2 Hz, 2H), 2.42 (t, J=7.5 Hz, 2H), 2.22-2.04 (m, 1H), 2.05-1.95 (m, 2H), 1.85-1.69 (m, 2H), 1.68-1.39 (m, 4H), 0.96-0.72 (m, 3H), 0.46-0.42 (m, 1H).Chiral SFC A (45% MeOH): ee 100%, Rt=2.31 min.
    • 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 24-E1 and 24-E2)
  • Figure US20200071322A1-20200305-C00406
  • Compound 24-E1 LC/MS ESI 447 (M+H)+1H NMR (400 MHz, MeOD) δ 7.61 (d, J=8.0 Hz, 1H), 7.32-7.25 (m, 2H), 7.16-7.10 (m, 2H), 6.33 (d, J=7.2 Hz, 1H), 5.25 (s, 1H), 3.75-3.36 (m, 3H), 3.33-3.31 (m, 2H), 2.71-2.68 (m, 3H), 2.51-2.18 (m, 5H), 1.90-1.84 (m, 2H), 1.68-1.58 (m, 3H), 1.46-1.33 (m, 6H), 1.09-1.07 (m, 3H), 0.59-0.55-(m, 1H).
  • Compound 24-E2 LC/MS ESI 447 (M+H)+1H NMR (400 MHz, MeOD) δ 7.61 (d, J=8.0 Hz 1H), 7.33-7.24 (m, 2H), 7.16-7.10 (m, 2H), 6.34 (d, J=7.2 Hz, 1H), 5.24 (s, 1H), 3.85-3.36 (m, 3H), 3.33-3.11 (m, 2H), 2.81-2.68 (m, 3H), 2.52-2.17 (m, 5H), 1.91-1.85 (m, 2H), 1.72-1.3 (m, 9H), 1.11-1.00 (m, 3H), 0.58-0.54 (m, 1H).
    • 2-(2-isopropoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy) pyrrolidin-1-yl)acetic acid (compound 25)
  • Figure US20200071322A1-20200305-C00407
  • Compound 25 LC/MS ESI 468.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.53-7.35 (m, 2H), 7.14 (d, J=7.2 Hz, 1H), 7.08 (d, J=8.4 Hz, 1H), 6.97 (t, J=7.6 Hz, 1H), 6.39-6.36 (m, 1H), 5.10-4.90 (m, 1H), 4.74-4.72 (m, 1H), 4.25 (s, 1H), 3.55-3.35 (m, 6H), 3.28-3.02 (m, 2H), 2.71 (t, J=6.0 Hz, 2H), 2.20-1.51 (m, 8H), 1.40-1.35 (m, 6H).
    • 2-(4-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 26)
  • Figure US20200071322A1-20200305-C00408
  • Compound 26 LC/MS ESI 449.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.73 (d, J=4.4 Hz, 1H), 8.36 (t, J=5.6 Hz, 1H), 7.13-7.10 (m, 1H), 7.01 (d, J=5.2 Hz, 1H), 6.37-6.33 (m, 1H), 5.02-4.95 (m, 1H), 3.65-3.35 (m, 3H), 3.25-2.95 (m, 2H), 2.75-2.65 (m, 3H), 2.55-2.10 (m, 5H), 1.91-1.85 (m, 2H), 1.70-1.60 (m, 3H), 1.50-1.18 (m, 8H), 1.06-1.03 (m, 1H), 0.78-0.74 (m, 1H).
    • 2-(2-cyclopropylphenyl)-2-((S)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 27-E1 and 27-E2)
  • Figure US20200071322A1-20200305-C00409
  • Compound 27-E1 LC/MS ESI 450.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.61 (d, J=7.6 Hz, 1H), 7.31-7.14 (m, 4H), 6.37 (d, J=7.2 Hz, 1H), 5.26 (s, 1H), 4.17 (s, 1H), 3.60-3.25 (m, 8H), 2.71 (t, J=6.4 Hz, 2H), 2.54 (t, J=7.2 Hz, 2H), 2.20-1.55 (m, 9H), 1.00-0.90 (m, 3H), 0.58-0.55 (m, 1H). Chiral SFC A (35% MeOH): ee 100%, Rt=3.45 min.
  • Compound 27-E2 LC/MS ESI 450.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.60 (d, J=7.6 Hz, 1H), 7.33-7.13 (m, 4H), 6.37 (d, J=7.2 Hz, 1H), 5.31 (s, 1H), 4.22 (s, 1H), 3.60-3.05 (m, 8H), 2.71 (t, J=6.4 Hz, 2H), 2.54 (t, J=7.2 Hz, 2H), 2.20-1.55 (m, 9H), 1.00-0.92 (m, 3H), 0.58-0.55 (m, 1H). Chiral SFC A (35% MeOH): ee 100%, Rt=4.18 min.
    • 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(2,2,2-trifluoroethoxy)phenyl)acetic acid (compound 28)
  • Figure US20200071322A1-20200305-C00410
  • Compound 28 LC/MS ESI 508.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.64-7.60 (m, 1H), 7.45-7.43 (m, 1H), 7.18-7.12 (m, 3H), 6.38-6.35 (m, 1H), 5.10-4.95 (m, 1H), 4.72-4.60 (m, 2H), 4.17 (s, 1H), 3.60-3.35 (m, 6H), 3.20-3.00 (m, 2H), 2.75-2.68 (m, 2H), 2.56-2.50 (m, 2H), 2.43-1.85 (m, 4H), 1.75-1.50 (m, 4H).
    • 2-(2-isobutoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy) pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 29-E1 and 29-E2)
  • Figure US20200071322A1-20200305-C00411
  • Compound 29-E1 LC/MS ESI 482.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.54 (s, 1H), 7.54 (d, J=7.6 Hz, 1H), 7.46-7.38 (m, 2H), 7.12-7.02 (m, 2H), 6.51 (d, J=7.6 Hz, 1H), 5.25 (s, 1H), 4.18 (s, 1H), 3.87-3.80 (m, 2H), 3.64-3.32 (m, 7H), 3.12-3.06 (m, 1H), 2.82-2.57 (m, 4H), 2.18-1.57 (m, 9H), 1.10-1.02 (m, 6H).
  • Compound 29-E2 LC/MS ESI 482.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.54 (s, 1H), 7.53 (d, J=7.6 Hz, 1H), 7.46-7.38 (m, 2H), 7.10-7.01 (m, 2H), 6.49 (d, J=7.6 Hz, 1H), 5.05 (s, 1H), 4.21 (s, 1H), 3.87-3.85 (m, 2H), 3.60-3.22 (m, 8H), 2.82-2.57 (m, 4H), 2.22-1.57 (m, 9H), 1.10-1.02 (m, 6H).
    • 2-(2-isopropoxypyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 30-E1 and 30-E2)
  • Figure US20200071322A1-20200305-C00412
  • Compound 30-E1 LC/MS ESI 467.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.21-8.19 (m, 1H), 7.91-7.88 (m, 1H), 7.12 (d, J=7.6 Hz, 1H), 7.02-6.98 (m, 1H), 6.34 (d, J=7.2 Hz, 1H), 5.45-5.41 (m, 1H), 3.55-3.36 (m, 3H), 3.25-2.95 (m, 3H), 2.70 (t, J=6.4 Hz, 2H), 2.49 (t, J=7.6 Hz, 2H), 2.45-2.15 (m, 2H), 1.91-1.85 (m, 2H), 1.69-1.59 (m, 3H), 1.42-1.33 (m, 13H).
  • Compound 30-E2 LC/MS ESI 467.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.21-8.19 (m, 1H), 7.92-7.89 (m, 1H), 7.12 (d, J=7.6 Hz, 1H), 7.02-6.98 (m, 1H), 6.35 (d, J=7.2 Hz, 1H), 5.45-5.39 (m, 1H), 3.60-3.36 (m, 3H), 3.18-3.13 (m, 1H), 2.85-2.65 (m, 3H), 2.53-2.35 (m, 3H), 2.21-2.17 (m, 1H), 1.91-1.85 (m, 2H), 1.71-1.58 (m, 3H), 1.48-1.32 (m, 13H).
    • 2-(2-cyclopropylphenyl)-2-((S)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 31-E1 and 31-E2)
  • Figure US20200071322A1-20200305-C00413
  • Compound 31-E1 LC/MS ESI 464.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.48 (s, 1H), 7.71-7.29 (m, 4H), 7.20 (d, J=7.6 Hz, 1H), 6.53 (d, J=7.2 Hz, 1H), 5.62 (s, 1H), 4.22 (s, 1H), 3.60-3.05 (m, 8H), 2.83-2.65 (m, 4H), 2.38-2.05 (m, 3H), 1.96-1.48 (m, 8H), 1.15-0.90 (m, 3H), 0.58-0.55 (m, 1H).
  • Compound 31-E2 LC/MS ESI 464.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.48 (s, 1H), 7.68 (d, J=6.8 Hz, 1H), 7.45 (d, J=7.6 Hz, 1H), 7.39-7.19 (m, 3H), 6.52 (d, J=7.2 Hz, 1H), 5.33 (s, 1H), 4.22 (s, 1H), 3.58-3.05 (m, 8H), 2.81-2.62 (m, 4H), 2.45-1.78 (m, 8H), 1.56-1.42 (m, 3H), 1.15-0.90 (m, 3H), 0.58-0.55 (m, 1H).
    • 2-(4-isopropylpyrimidin-5-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 32)
  • Figure US20200071322A1-20200305-C00414
  • Compound 32 LC/MS ESI 452.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.99-8.94 (m, 2H), 7.26 (d, J=6.8 Hz, 1H), 6.41 (d, J=7.2 Hz, 1H), 4.67-4.62 (m, 1H), 3.71-3.69 (m, 1H), 3.47-3.32 (m, 4H), 3.16-2.85 (m, 2H), 2.73-2.63 (m, 5H), 2.41-2.03 (m, 2H), 1.96-1.80 (m, 2H), 1.73-1.52 (m, 3H), 1.52-1.24 (m, 12H).
    • 2-(2-cyclobutoxyphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 33-E1 and 33-E2)
  • Figure US20200071322A1-20200305-C00415
  • Compound 33-E1 LC/MS ESI 480.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.50 (d, J=6.8 Hz, 1H), 7.38-7.33 (m, 1H), 7.13 (d, J=7.2 Hz, 1H), 7.00-6.90 (m, 2H), 6.37 (d, J=7.2 Hz, 1H), 5.08 (s, 1H), 4.82-4.76 (m, 1H), 4.19 (s, 1H), 3.62-3.05 (m, 8H), 2.78-2.40 (m, 6H), 2.25-1.55 (m, 12H). Chiral SFC A (45% MeOH): ee 99%, Rt=1.82 min.
  • Compound 33-E2 LC/MS ESI 480.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.42 (d, J=7.2 Hz, 1H), 7.28-7.22 (m, 1H), 7.03 (d, J=7.6 Hz, 1H), 7.90-6.79 (m, 2H), 6.26 (d, J=7.6 Hz, 1H), 4.95 (s, 1H), 4.75-4.66 (m, 1H), 4.06 (s, 1H), 3.52-3.05 (m, 8H), 2.60 (t, J=6.0 Hz, 2H), 2.44-2.30 (m, 4H), 2.20-1.98 (m, 4H), 1.80-1.45 (m, 8H). Chiral SFC A (45% MeOH): ee 94%, Rt=2.77 min.
    • 2-(2-(pyrrolidin-1-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 34-E1 and 34-E2)
  • Figure US20200071322A1-20200305-C00416
  • Compound 34-E1 LC/MS ESI 479.4 (M+H)+. 1H NMR (400 MHz, CDCL3) δ 7.50 (d, J=6.8 Hz, 1H), 7.28-7.02 (m, 4H), 6.27 (d, J=7.2 Hz, 1H), 4.68 (s, 1H), 3.94-3.91 (m, 1H), 3.49-3.17 (m, 10H), 2.72-2.49 (m, 6H), 2.06-1.55 (m, 12H).
  • Compound 34-E2 LC/MS ESI 479.4 (M+H)+. 1H NMR (400 MHz, CDCL3) δ 7.55 (s, 1H), 7.28-7.02 (m, 4H), 6.27 (d, J=7.2 Hz, 1H), 4.55 (s, 1H), 3.98-3.95 (m, 1H), 3.50-3.07 (m, 10H), 2.85-2.49 (m, 6H), 2.06-1.55 (m, 12H).
    • 2-(2-cyclopropylphenyl)-2-((R)-3-(3-((5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)methoxy)propyl)pyrrolidin-1-yl)acetic acid (compound 35)
  • Figure US20200071322A1-20200305-C00417
  • Compound 35 LC/MS ESI 450 (M+H)+1H NMR (400 MHz, MeOD) δ 8.50 (brs, 1H), 7.62-7.60 (m, 1H), 7.41-7.21 (m, 4H), 6.60-6.58 (m, 1H), 5.30-5.28 (m, 1H), 4.37-4.35 (m, 2H), 3.36-3.31 (m, 5H), 3.30-3.11 (m, 2H), 2.85-2.75 (m, 3H), 2.50-1.50 (m, 10H), 1.10-0.50 (m, 4H).
    • 2-(2-cyclopropylphenyl)-2-(cis-3-fluoro-4-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 36-E1 and 36-E2)
  • Figure US20200071322A1-20200305-C00418
  • Compound 36-E1 LC/MS ESI 468.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.53 (s, 1H), 7.70-7.07 (m, 5H), 6.49 (d, J=8.3 Hz, 1H), 5.32-5.19 (m, 2H), 4.30-4.04 (m, 1H), 3.84-3.36 (m, 6H), 3.33-3.24 (m, 1H), 3.00 (t, J=9.7 Hz, 1H), 2.77-2.64 (m, 4H), 2.36-2.18 (m, 1H), 1.98-1.83 (m, 2H), 1.80-1.52 (m, 4H), 1.16-0.87 (m, 3H), 0.58-0.54 (m, 1H).
  • Compound 36-E2 LC/MS ESI 468.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.50 (s, 1H), 7.68-7.06 (m, 5H), 6.52 (d, J=7.2 Hz, 1H), 5.42-5.08 (m, 2H), 4.44-4.01 (m, 1H), 3.81-3.33 (m, 6H), 3.33-3.24 (m, 2H), 2.77-2.64 (m, 4H), 2.36-2.18 (m, 1H), 1.98-1.83 (m, 2H), 1.84-1.53 (m, 4H), 1.24-0.85 (m, 3H), 0.58-0.54 (m, 1H).
    • 2-(2-cyclopropyl-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 37)
  • Figure US20200071322A1-20200305-C00419
  • Compound 37 LC/MS ESI 468.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.52 (s, 1H), 7.48-7.01 (m, 4H), 6.49-6.46 (m, 1H), 5.41-5.28 (m, 1H), 4.24-4.20 (m, 1H), 3.55-3.10 (m, 8H), 2.77-2.61 (m, 4H), 2.29-2.05 (m, 3H), 1.92-1.55 (m, 6H), 1.05-0.80 (m, 3H), 0.55-0.50 (m, 1H).
    • 2-(2-cyclopropyl-6-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 38)
  • Figure US20200071322A1-20200305-C00420
  • Compound 38 LC/MS ESI 468.4 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.49 (s, 1H), 7.45-7.37 (m, 2H), 7.09-7.03 (m, 2H), 6.54-6.50 (m, 1H), 5.60-5.52 (m, 1H), 4.24-4.20 (m, 1H), 3.59-3.15 (m, 8H), 2.80-2.63 (m, 4H), 2.23-2.13 (m, 3H), 1.92-1.55 (m, 6H), 1.08-0.65 (m, 4H).
    • 2-(2-(methoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 39-E1 and 39-E2)
  • Figure US20200071322A1-20200305-C00421
  • Compound 39-E1 LC/MS ESI 454.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.66-7.64 (m, 1H), 7.43-7.39 (m, 3H), 7.13 (d, J=7.2 Hz, 1H), 6.36 (d, J=7.2 Hz, 1H), 4.89 (s, 1H), 4.44 (d, J=8.0 Hz, 1H), 4.17 (s, 1H), 3.49-3.36 (m, 8H), 3.14-3.13 (m, 2H), 2.70 (t, J=6.4 Hz, 2H), 2.55 (t, J=7.6 Hz, 2H), 2.14-2.13 (m, 2H), 1.96-1.84 (m, 2H), 1.74-1.59 (m, 5H). Chiral SFC A (40% MeOH): ee 100%, Rt=2.64 min.
  • Compound 39-E2 LC/MS ESI 454.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.67-7.65 (m, 1H), 7.42-7.38 (m, 3H), 7.13 (d, J=7.6 Hz, 1H), 6.36 (d, J=7.2 Hz, 1H), 4.81 (s, 1H), 4.45 (s, 1H), 4.17 (s, 1H), 3.36-3.27 (m, 8H), 3.19-3.13 (m, 2H), 2.70 (t, J=6.4 Hz, 2H), 2.55 (t, J=7.6 Hz, 2H), 2.18-2.14 (m, 2H), 1.90-1.84 (m, 2H), 1.73-1.58 (m, 5H). Chiral SFC A (40% MeOH): ee 100%, Rt=4.68 min.
    • 2-(2-(cyclopropylmethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 40-E1 and 40-E2)
  • Figure US20200071322A1-20200305-C00422
  • Compound 40-E1 LC/MS ESI 464.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.45 (s, 1H), 7.66-7.30 (m, 5H), 6.54 (d, J=7.2 Hz, 1H), 5.18-4.93 (m, 1H), 4.21 (m, 1H), 3.61-3.41 (m, 6H), 3.28-3.24 (m, 2H), 2.94-2.64 (m, 6H), 2.22-2.18 (m, 2H), 1.94-1.65 (m, 6H), 1.17-1.11 (m, 1H), 0.58-0.52 (m, 2H), 0.27-0.24 (m, 2H).
  • Compound 40-E2 LC/MS ESI 464.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.46 (s, 1H), 7.63-7.31 (m, 5H), 6.57 (d, J=7.6 Hz, 1H), 5.13 (s, 1H), 4.24 (m, 1H), 3.59-3.42 (m, 6H), 3.18-3.11 (m, 2H), 2.86-2.61 (m, 6H), 2.16-2.13 (m, 2H), 1.93-1.68 (m, 6H), 1.17-1.11 (m, 1H), 0.56-0.51 (m, 2H), 0.27-0.23 (m, 2H).
    • 2-(2-isopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 41-E1 and 41-E2)
  • Figure US20200071322A1-20200305-C00423
  • Compound 41-E1 LC/MS ESI 452.2 (M+H)+1H NMR (400 MHz, MeOD) δ 7.61 (d, J=7.2 Hz, 1H), 7.41 (d, J=6.4 Hz, 1H), 7.38 (t, J=7.2 Hz, 1H), 7.22 (t, J=7.0 Hz, 1H), 7.14 (d, J=7.2 Hz, 1H), 6.37 (d, J=7.2 Hz, 1H), 4.92 (s, 1H), 4.18 (s, 1H), 3.49-3.36 (m, 6H), 3.32-3.03 (m, 3H), 2.70 (t, J=6.4 Hz, 2H), 2.55 (t, J=7.6 Hz, 2H), 2.21-2.02 (m, 2H), 1.89-1.84 (m, 2H), 1.71-1.69 (m, 2H), 1.62-1.58 (m, 2H), 1.30-1.27 (m, 6H). Chiral SFC F (45% MeOH): ee 100%, Rt=3.67 min.
  • Compound 41-E2 LC/MS ESI 452.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.60 (d, J=7.0 Hz, 1H), 7.41 (d, J=6.0 Hz, 1H), 7.38 (t, J=7.2 Hz, 1H), 7.23 (t, J=8.0 Hz, 1H), 7.17 (d, J=7.2 Hz, 1H), 6.40 (d, J=7.6 Hz, 1H), 5.03 (s, 1H), 4.20 (s, 1H), 3.56-3.54 (m, 3H), 3.39-3.36 (m, 3H), 3.08-3.01 (m, 3H), 2.72 (t, J=6.4 Hz, 2H), 2.58 (t, J=7.6 Hz, 2H), 2.19-2.02 (m, 2H), 1.91-1.88 (m, 2H), 1.77-1.62 (m, 2H), 1.61-1.58 (m, 2H), 1.31-1.27 (m, 6H). Chiral SFC F (45% MeOH): ee 96.7%, Rt=8.03 min.
    • 2-(2-cyclopropyl-6-(cyclopropylmethyl)pyridin-3-yl)-2-((R)-3-(3-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)propoxy)pyrrolidin-1-yl)acetic acid (compound 42)
  • Figure US20200071322A1-20200305-C00424
  • Compound 42 LC/MS ESI 491.6 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.67 (d, J=8.1 Hz, 1H), 6.92 (d, J=7.5 Hz, 2H), 6.16 (d, J=7.3 Hz, 1H), 4.78-4.72 (m, 1H), 4.11-3.81 (m, 1H), 3.39-3.13 (m, 5H), 2.97-2.72 (m, 3H), 2.55-2.47 (m, 2H), 2.43-2.19 (m, 5H), 2.05-1.78 (m, 2H), 1.78-1.58 (m, 4H), 1.14-0.98 (m, 1H), 0.94-0.63 (m, 4H), 0.31-0.27 (m, 2H), 0.22-0.18 (m, 2H).
    • 2-(2-cyclopropoxyphenyl)-2-((3R,4S)-3-fluoro-4-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 43-E1 and 43-E2)
  • Figure US20200071322A1-20200305-C00425
  • Compound 43-E1 LC/MS ESI 484.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.49 (d, J=7.5 Hz, 1H), 7.40-7.39 (m, 2H), 7.20-7.18 (m, 1H), 7.06-6.96 (m, 1H), 6.39 (d, J=7.3 Hz, 1H), 5.20 (d, J=54.2 Hz, 1H), 4.89 (s, 1H), 4.10-4.02 (m, 1H), 3.90 (s, 1H), 3.80-3.33 (m, 6H), 3.20-3.03 (m, 2H), 2.71 (t, J=6.2 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 1.90-1.82 (m, 2H), 1.75-1.55 (m, 4H), 0.96-0.63 (m, 4H).
  • Compound 43-E2 LC/MS ESI 484.4 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.51 (d, J=7.5 Hz, 1H), 7.39-7.37 (m, 2H), 7.20-7.18 (m, 1H), 7.06-6.96 (m, 1H), 6.41 (d, J=7.3 Hz, 1H), 5.12 (d, J=54.2 Hz, 1H), 4.84 (s, 1H), 4.10-4.02 (m, 1H), 3.87 (s, 1H), 3.65-3.33 (m, 6H), 3.20-3.01 (m, 2H), 2.72 (t, J=6.2 Hz, 2H), 2.59 (t, J=7.6 Hz, 2H), 1.90-1.82 (m, 2H), 1.75-1.55 (m, 4H), 0.96-0.63 (m, 4H).
    • 2-(5-fluoro-2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 44-E1 and 44-E2)
  • Figure US20200071322A1-20200305-C00426
  • Compound 44-E1 LC/MS ESI 500.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.55-7.41 (m, 3H), 7.25-7.19 (m, 1H), 6.61 (d, J=7.2 Hz, 1H), 5.29 (s, 1H), 4.83-4.79 (m, 1H), 4.51-4.47 (m, 1H), 4.26 (s, 1H), 3.83-3.23 (m, 9H), 2.84-2.71 (m, 4H), 2.29-1.55 (m, 8H), 1.35-1.20 (m, 6H).
  • Compound 44-E2 LC/MS ESI 500.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.59-7.41 (m, 3H), 7.25-7.19 (m, 1H), 6.60 (d, J=7.2 Hz, 1H), 5.19 (s, 1H), 4.83-4.79 (m, 1H), 4.51-4.47 (m, 1H), 4.28 (s, 1H), 3.83-3.23 (m, 9H), 2.84-2.71 (m, 4H), 2.29-1.55 (m, 8H), 1.35-1.20 (m, 6H).
    • 2-(2,4-dicyclopropylpyrimidin-5-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 45)
  • Figure US20200071322A1-20200305-C00427
  • Compound 45 LC/MS ESI 492 (M+H)+1H NMR (400 MHz, MeOD) δ 8.60-8.57 (m, 1H), 8.46 (bs, 1H), 7.52 (d, J=7.2 Hz, 1H), 6.59 (d, J=7.6 Hz, 1H), 5.21-5.10 (m, 1H), 4.23-4.21 (m, 1H), 3.70-2.50 (m, 12H), 2.50-1.55 (m, 10H), 1.50-1.00 (m, 8H).
    • 2-(2-(cyclobutoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 46-E1 and 46-E2)
  • Figure US20200071322A1-20200305-C00428
  • Compound 46-E1 LC/MS ESI 494.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.51 (s, 1H), 7.68-7.66 (m, 1H), 7.45-7.41 (m, 4H), 6.53 (d, J=7.2 Hz, 1H), 5.06 (s, 1H), 4.82-4.79 (m, 1H), 4.40-4.36 (m, 1H), 4.21-4.09 (m, 2H), 3.63-3.33 (m, 7H), 3.18-3.14 (m, 1H), 2.79-2.68 (m, 4H), 2.24-1.50 (m, 14H).
  • Compound 46-E2 LC/MS ESI 494.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.49 (s, 1H), 7.66 (s, 1H), 7.48-7.42 (m, 4H), 6.54 (d, J=7.2 Hz, 1H), 4.94 (s, 1H), 4.80-4.45 (m, 2H), 4.24-4.10 (m, 2H), 3.58-3.15 (m, 8H), 2.80-2.62 (m, 4H), 2.24-1.50 (m, 14H).
    • 2-(2-(3-fluoro-3-methylbutyl)pyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 47)
  • Figure US20200071322A1-20200305-C00429
  • Compound 47 LC/MS ESI 498.9 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.43-8.42 (m, 1H), 8.31-8.08 (m, 1H), 7.32-7.23 (m, 2H), 6.44-6.41 (m, 1H), 4.69-4.57 (m, 1H), 4.13-4.12 (m, 1H), 3.49-3.32 (m, 4H), 3.24-2.90 (m, 6H), 2.75-2.56 (m, 4H), 2.25-1.52 (m, 10H), 1.48-1.35 (m, 6H).
    • 2-(3-cyano-2-cyclopropylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 48)
  • Figure US20200071322A1-20200305-C00430
  • Compound 48 LC/MS ESI 475.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.85-7.81 (m, 2H), 7.60-7.55 (m, 2H), 6.01 (d, J=7.2 Hz, 1H), 5.90-5.78 (m, 1H), 4.28-4.26 (m, 1H), 3.62-3.46 (m, 7H), 3.28-3.20 (m, 1H), 2.84-2.72 (m, 4H), 2.27-1.67 (m, 9H), 1.26-0.88 (m, 4H).
    • 2-(1-isopentyl-6-oxo-1,6-dihydropyridin-2-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 49)
  • Figure US20200071322A1-20200305-C00431
  • Compound 49 LC/MS ESI 497 (M+H)+1H NMR (400 MHz, MeOD) δ 8.41 (s, 2H), 7.71 (t, J=7.6 Hz, 1H), 7.52 (d, J=7.6 Hz, 1H), 7.14 (d, J=6.8 Hz, 1H), 6.78 (d, J=8.4 Hz, 1H), 6.55 (d, J=7.6 Hz, 1H), 4.85 (d, J=9.6 Hz, 1H), 4.40-4.21 (m, 3H), 3.70-2.50 (m, 12H), 2.50-1.55 (m, 11H), 0.96-0.94 (m, 6H).
    • 2-(6-cyclopropyl-4-(isopropoxymethyl)pyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 50-E1 and 50-E2)
  • Figure US20200071322A1-20200305-C00432
  • Compound 50-E1 LC/MS ESI 523.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.58 (s, 1H), 8.50 (s, 1H), 7.41 (d, J=7.3 Hz, 1H), 7.32 (s, 1H), 6.51 (d, J=7.3 Hz, 1H), 4.78-4.75 (m, 1H), 4.62-4.59 (m, 1H), 4.20 (s, 1H), 3.84-3.76 (m, 1H), 3.69-3.32 (m, 8H), 3.24-3.07 (m, 1H), 2.83-2.39 (m, 4H), 2.12-2.02 (m, 3H), 1.97-1.87 (m, 2H), 1.84-1.61 (m, 4H), 1.27-1.25 (m, 6H), 1.21-0.83 (m, 4H).
  • Compound 50-E2 LC/MS ESI 523.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.57-8.49 (m, 2H), 7.40 (d, J=7.3 Hz, 1H), 7.32 (s, 1H), 6.51 (d, J=7.3 Hz, 1H), 4.89-4.69 (m, 2H), 4.23 (s, 1H), 3.81-3.76 (m, 1H), 3.60-3.32 (m, 7H), 3.24-3.10 (m, 2H), 2.78-2.66 (m, 4H), 2.12-2.02 (m, 3H), 1.97-1.87 (m, 2H), 1.74-1.51 (m, 4H), 1.27-1.25 (m, 6H), 1.21-0.83 (m, 4H).
    • 2-(3-fluoro-2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 51)
  • Figure US20200071322A1-20200305-C00433
  • Compound 51 LC/MS ESI 500 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.52 (d, J=8.0 Hz, 1H), 7.45-7.41 (m, 1H), 7.20-7.15 (m, 1H), 6.39-6.37 (m, 1H), 4.84-4.76 (m, 1H), 4.18 (s, 1H), 3.85-3.81 (m, 1H), 3.49-3.40 (m, 6H), 3.33-3.12 (m, 2H), 2.73-2.70 (m, 2H), 2.56-2.53 (m, 2H), 2.12-2.06 (m, 2H), 1.90-1.58 (m, 6H), 1.26-1.21 (m, 6H).
    • 2-(2,4-dicyclopropylpyrimidin-5-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 52)
  • Figure US20200071322A1-20200305-C00434
  • Compound 52 LC/MS ESI 490 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.61-8.59 (m, 1H), 8.36 (bs, 2H), 7.51 (d, J=7.2 Hz, 1H), 6.55 (d, J=7.2 Hz, 1H), 5.11-5.10 (m, 1H), 3.50-2.50 (m, 8H), 2.50-1.55 (m, 9H), 1.50-1.00 (m, 15H).
    • 2-(2-((cyclopropylmethoxy)methyl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 53-E1 and 53-E2)
  • Figure US20200071322A1-20200305-C00435
  • Compound 53-E1 LC/MS ESI 512.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.51 (s, 1H), 7.49-7.41 (m, 3H), 7.20-7.15 (m, 1H), 6.52 (d, J=7.2 Hz, 1H), 5.07 (s, 1H), 4.86-4.84 (m, 1H), 4.48-4.45 (m, 1H), 4.22 (s, 1H), 3.62-3.12 (m, 10H), 2.79-2.65 (m, 4H), 2.24-1.55 (m, 8H), 1.08-1.01 (m, 1H), 0.54-0.49 (m, 2H), 0.27-0.24 (m, 2H).
  • Compound 53-E2 LC/MS ESI 512.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.51 (s, 1H), 7.49-7.46 (m, 3H), 7.20-7.16 (m, 1H), 6.54 (d, J=7.2 Hz, 1H), 4.98 (s, 1H), 4.85-4.52 (m, 2H), 4.24 (s, 1H), 3.60-3.12 (m, 10H), 2.81-2.65 (m, 4H), 2.29-1.55 (m, 8H), 1.16-1.13 (m, 1H), 0.54-0.49 (m, 2H), 0.27-0.24 (m, 2H).
    • 2-(5-fluoro-2-((l-methylcyclopropoxy)methyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 54-E1 and 54-E2)
  • Figure US20200071322A1-20200305-C00436
  • Compound 54-E1 LC/MS ESI 512.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.51 (s, 1H), 7.49-7.38 (m, 3H), 7.17-7.11 (m, 1H), 6.50 (d, J=7.6 Hz, 1H), 4.93-4.90 (m, 2H), 4.53-4.50 (m, 1H), 4.21 (s, 1H), 3.66-3.09 (m, 8H), 2.78-2.65 (m, 4H), 2.18-1.62 (m, 8H), 1.50 (s, 3H), 0.87-0.84 (m, 2H), 0.49-0.45 (m, 2H).
  • Compound 54-E2 LC/MS ESI 512.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.51 (s, 1H), 7.47-7.36 (m, 3H), 7.15-7.11 (m, 1H), 6.48 (d, J=7.2 Hz, 1H), 4.85-4.80 (m, 2H), 4.60-4.57 (m, 1H), 4.20 (s, 1H), 3.62-3.09 (m, 8H), 2.77-2.64 (m, 4H), 2.20-1.64 (m, 8H), 1.50 (s, 3H), 0.91-0.88 (m, 2H), 0.49-0.47 (m, 2H).
    • 2-(5-fluoro-2-(isopropoxymethyl)phenyl)-2-((3R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 55-E1 and 55-E2)
  • Figure US20200071322A1-20200305-C00437
  • Compound 55-E1 (mixture of 2 stereoisomers) LC/MS ESI 514 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.35 (s, 2H), 7.54-7.47 (m, 3H), 7.19-7.15 (m, 1H), 6.57 (d, J=7.2 Hz, 1H), 5.07-5.05 (m, 1H), 4.85 (d, J=7.6 Hz, 1H), 4.50-3.31 (m, 9H), 3.30-2.00 (m, 8H), 1.96-1.20 (m, 14H).
  • Compound 55-E2 (mixture of 2 stereoisomers) LC/MS ESI 514 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.31 (s, 2H), 7.54-7.47 (m, 3H), 7.19-7.15 (m, 1H), 6.58 (d, J=8.8 Hz, 1H), 5.07-5.05 (m, 1H), 4.87-4.35 (m, 3H), 3.80-3.31 (m, 5H), 3.30-2.25 (m, 8H), 2.15-1.20 (m, 16H).
    • 2-(2-((S)-1-isopropoxyethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 56-E1 and 56-E2)
  • Figure US20200071322A1-20200305-C00438
  • Compound 56-E1 LC/MS ESI 496.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.56 (s, 1H), 7.71 (d, J=7.2 Hz, 1H), 7.47 (d, J=7.2 Hz, 1H), 7.24-7.19 (m, 1H), 7.11 (d, J=7.6 Hz, 1H), 6.34 (d, J=7.6 Hz, 1H), 5.44-5.42 (m, 1H), 4.19 (s, 1H), 4.02 (s, 1H), 3.56-3.31 (m, 4H), 2.95-2.48 (m, 8H), 2.14-1.81 (m, 4H), 1.68-1.52 (m, 4H), 1.41-1.02 (m, 9H). Chiral SFC F (45% MeOH): ee 100%, Rt=3.77 min.
  • Compound 56-E2 LC/MS ESI 496.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.65-7.61 (m, 2H), 7.42-7.31 (m, 2H), 7.17 (d, J=7.6 Hz, 1H), 6.40 (d, J=7.2 Hz, 1H), 5.06-5.04 (m, 1H), 4.20 (s, 1H), 3.53-3.31 (m, 7H), 3.08-2.98 (m, 2H), 2.72 (t, J=6.4 Hz, 2H), 2.57 (t, J=7.2 Hz, 2H), 2.18-1.82 (m, 4H), 1.78-1.50 (m, 4H), 1.45-1.42 (m, 3H), 1.20-1.08 (m, 6H). Chiral SFC F (45% MeOH): ee 100%, Rt=5.60 min.
    • 2-(2-((R)-1-isopropoxyethyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 57-E1 and 57-E2)
  • Figure US20200071322A1-20200305-C00439
  • Compound 57-E1 LC/MS ESI 496.4 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.47 (s, 1H), 7.70 (d, J=7.6 Hz, 1H), 7.65 (d, J=8.0 Hz, 1H), 7.45-7.34 (m, 3H), 6.53 (d, J=7.2 Hz, 1H), 5.11-5.09 (m, 1H), 4.94 (s, 1H), 4.23 (s, 1H), 3.59-3.28 (m, 9H), 2.78 (t, J=6.4 Hz, 2H), 2.69 (t, J=7.6 Hz, 2H), 2.27-2.14 (m, 2H), 1.93-1.65 (m, 6H), 1.49 (d, J=6.4 Hz, 3H), 1.21-1.12 (m, 6H).
  • Compound 57-E2 LC/MS ESI 496.4 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.46 (s, 1H), 7.62 (d, J=8.0 Hz, 1H), 7.53 (d, J=7.2 Hz, 1H), 7.46-7.34 (m, 3H), 6.53 (d, J=7.2 Hz, 1H), 5.23 (s, 1H), 5.10-5.05 (m, 1H), 4.25 (s, 1H), 3.66-3.20 (m, 9H), 2.80-2.67 (m, 4H), 2.17-2.10 (m, 2H), 1.93-1.65 (m, 6H), 1.50-1.47 (m, 3H), 1.21-1.02 (m, 6H).
    • 2-(5-fluoro-2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(4-fluoro-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 58)
  • Figure US20200071322A1-20200305-C00440
  • Compound 58 LC/MS ESI 518 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.50 (bs, 1H), 7.45-7.43 (m, 2H), 7.18-7.14 (m, 1H), 6.25 (d, J=7.6 Hz, 1H), 4.90-4.80 (m, 2H), 4.52-4.48 (m, 1H), 4.22 (s, 1H), 3.80-3.05 (m, 9H), 2.70-2.55 (m, 4H), 2.22-1.54 (m, 8H), 1.25-1.18 (m, 6H).
    • 2-(5-fluoro-2-(isopropoxymethyl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 59)
  • Figure US20200071322A1-20200305-C00441
  • Compound 59 LC/MS ESI 530 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.54 (bs, 1H), 7.48-7.45 (m, 2H), 7.13-7.12 (m, 1H), 6.40 (d, J=8.8 Hz, 1H), 4.90-4.83 (m, 2H), 4.52-4.48 (m, 1H), 4.19 (s, 1H), 3.81-3.75 (m, 4H), 3.55-3.02 (m, 8H), 2.68-2.52 (m, 4H), 2.20-1.54 (m, 8H), 1.28-1.20 (m, 6H).
    • 2-(5-fluoro-2-((3-methyloxetan-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 60)
  • Figure US20200071322A1-20200305-C00442
  • Compound 60 LC/MS ESI 528.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.52-7.46 (m, 2H), 7.19-7.11 (m, 2H), 6.39 (d, J=7.2 Hz, 1H), 4.88-4.72 (m, 4H), 4.54-4.42 (m, 3H), 4.17 (s, 1H), 3.48-3.31 (m, 6H), 3.18-3.03 (m, 2H), 2.73-2.55 (m, 4H), 2.20-1.84 (m, 4H), 1.78-1.55 (m, 8H).
    • 2-(3-fluoro-2-(((R)-tetrahydrofuran-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 61)
  • Figure US20200071322A1-20200305-C00443
  • Compound 61 LC/MS ESI 528.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.56-7.46 (m, 1H), 7.43-7.38 (m, 1H), 7.21-7.18 (m, 2H), 6.41-6.38 (m, 1H), 4.86 (m, 1H), 4.81-4.68 (m, 2H), 4.39-4.35 (m, 1H), 4.30-4.14 (m, 1H), 3.98-3.65 (m, 4H), 3.50-3.39 (m, 5H), 3.18-3.00 (m, 2H), 2.75-2.71 (m, 2H), 2.58-2.55 (m, 2H), 2.21-2.02 (m, 4H), 1.92-1.80 (m, 2H), 1.76-1.65 (m, 2H), 1.62-1.58 (m, 3H).
    • 2-(3-fluoro-2-(((R)-tetrahydrofuran-3-yloxy)methyl)phenyl)-2-((3R)-3-(1-hydroxy-5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 62)
  • Figure US20200071322A1-20200305-C00444
  • Compound 62 LC/MS ESI 542.4 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.42-7.34 (m, 2H), 7.19-7.08 (m, 2H), 6.36-6.33 (m, 1H), 4.68-4.60 (m, 1H), 4.28-4.23 (m, 1H), 3.98-3.50 (m, 5H), 3.44-3.31 (m, 6H), 3.15-2.84 (m, 2H), 2.64-2.45 (m, 4H), 2.20-1.75 (m, 5H), 1.60-1.22 (m, 8H).
    • 2-(3-fluoro-2-((3-methyloxetan-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 63)
  • Figure US20200071322A1-20200305-C00445
  • Compound 63 LC/MS ESI 528.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.57-7.45 (m, 2H), 7.24-7.16 (m, 2H), 6.41-6.37 (m, 1H), 4.94-4.71 (m, 4H), 4.47-4.41 (m, 2H), 4.20-4.18 (m, 1H), 3.74-3.02 (m, 8H), 2.72 (t, J=6.4 Hz, 2H), 2.56 (t, J=7.2 Hz, 2H), 2.20-1.84 (m, 4H), 1.78-1.51 (m, 7H).
    • 2-(5-fluoro-2-(((R)-tetrahydrofuran-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 64)
  • Figure US20200071322A1-20200305-C00446
  • Compound 64 LC/MS ESI 528.4 (M+H)+ 1H NMR (500 MHz, MeOD) δ 8.43 (s, 1H), 7.52-7.49 (m, 3H), 7.19-7.17 (m, 1H), 6.57 (d, J=7.0 Hz, 1H), 5.03-4.83 (m, 2H), 4.57-4.49 (m, 1H), 4.38-4.28 (m, 2H), 3.98-3.22 (m, 12H), 2.82-2.72 (m, 4H), 2.30-2.04 (m, 4H), 1.98-1.58 (m, 6H).
    • 2-(2-cyclobutylphenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 65)
  • Figure US20200071322A1-20200305-C00447
  • Compound 65 LC/MS ESI 528.4 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.62-7.59 (m, 1H), 7.51-7.27 (m, 4H), 6.59-6.55 (m, 1H), 5.05-4.91 (m, 1H), 4.30-4.28 (m, 1H), 4.02-3.90 (m, 1H), 3.68-3.05 (m, 8H), 2.81-2.70 (m, 4H), 2.44-1.58 (m, 14H).
    • 2-(2-cyclopropyl-3-methoxyphenyl)-2-[(3R)-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl]acetic acid (Diastereomeric Compounds 66-E1 and 66-E2)
  • Figure US20200071322A1-20200305-C00448
  • Compound 66-E1 LC/MS ESI 480 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.46 (d, J=7.2 Hz, 1H), 7.32-7.28 (m, 1H), 7.19 (d, J=7.6 Hz, 1H), 6.99 (d, J=8.4 Hz, 1H), 6.53 (d, J=8.4 Hz, 1H), 5.58 (s, 1H), 4.21-4.18 (m, 1H), 3.86 (s, 3H), 3.61-3.24 (m, 8H), 2.81-2.66 (m, 4H), 2.18-1.61 (m, 9H), 1.11-0.67 (m, 4H).
  • Compound 66-E2 LC/MS ESI 480 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.47 (d, J=7.2 Hz, 1H), 7.34-7.17 (m, 2H), 7.02 (d, J=8.4 Hz, 1H), 6.55 (d, J=7.2 Hz, 1H), 5.76 (s, 1H), 4.21-4.18 (m, 1H), 3.86 (s, 3H), 3.65-3.24 (m, 8H), 2.78-2.54 (m, 4H), 2.22-1.51 (m, 9H), 1.15-0.60 (m, 4H).
    • 2-(2-(cis-2-methoxycyclopropyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 67-E1 and 67-E2)
  • Figure US20200071322A1-20200305-C00449
  • Compound 67-E1 LC/MS ESI 480.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.69-7.58 (m, 1H), 7.29-7.23 (m, 2H), 7.15-7.09 (m, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.19 (d, J=7.8 Hz, 1H), 4.18-4.17 (m, 1H), 3.70-3.34 (m, 9H), 3.27-3.24 (m, 3H), 2.70 (t, J=6.2 Hz, 2H), 2.61-2.37 (m, 3H), 2.25-2.05 (m, 2H), 1.96-1.79 (m, 2H), 1.79-1.47 (m, 4H), 1.42-0.84 (m, 2H). Chiral K: (45% MeOH): ee 98.4%, Rt=2.78 min.
  • Compound 67-E2 LC/MS ESI 480.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.68-7.56 (m, 1H), 7.49-7.26 (m, 4H), 6.51-6.49 (m, 1H), 5.31-5.26 (m, 1H), 4.18-4.17 (m, 1H), 3.72-3.34 (m, 12H), 2.75-2.55 (m, 4H), 2.50-2.42 (m, 1H), 2.25-2.05 (m, 2H), 1.96-1.52 (m, 6H), 1.12-1.04 (m, 2H). Chiral K: (45% MeOH): ee 38%, Rt=5.26 min.
    • 2-(2-(trans-2-methoxycyclopropyl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 68-E1 and 68-E2)
  • Figure US20200071322A1-20200305-C00450
  • Compound 68-E1 LC/MS ESI 480.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.69-7.58 (m, 1H), 7.29-7.23 (m, 2H), 7.15-7.09 (m, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.24 (d, J=7.8 Hz, 1H), 4.18-4.17 (m, 1H), 3.70-3.34 (m, 9H), 3.27-3.24 (m, 3H), 2.70 (t, J=6.2 Hz, 2H), 2.61-2.37 (m, 3H), 2.25-2.05 (m, 2H), 1.96-1.79 (m, 2H), 1.79-1.47 (m, 4H), 1.42-0.84 (m, 2H). Chiral K: (45% MeOH): ee 98.4%, Rt=2.72 min.
  • Compound 68-E1 LC/MS ESI 480.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.62-7.59 (m, 1H), 7.33-7.24 (m, 2H), 7.16-7.07 (m, 2H), 6.37 (d, J=7.3 Hz, 1H), 5.30-5.23 (m, 1H), 4.21 (s, 1H), 3.65-3.02 (m, 12H), 2.70 (t, J=6.2 Hz, 2H), 2.56-2.30 (m, 3H), 2.16-1.98 (m, 2H), 1.96-1.80 (m, 2H), 1.79-1.49 (m, 4H), 1.38-1.05 (m, 2H). Chiral K: (45% MeOH): ee 38%, Rt=5.22 min.
    • 2-(3-fluoro-2-((3-methyloxetan-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 69)
  • Figure US20200071322A1-20200305-C00451
  • Compound 69 LC/MS ESI 558 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.62-7.60 (m, 1H), 7.43-7.41 (m, 1H), 7.19-7.14 (m, 1H), 6.28 (s, 1H), 4.90-4.71 (m, 7H), 4.46-4.41 (m, 2H), 4.17-4.12 (m, 1H), 3.87 (s, 3H), 3.55-3.30 (m, 4H), 3.22-2.95 (m, 2H), 2.64-2.52 (m, 4H), 2.20-1.55 (m, 11H).
    • 2-(4-((3-methyloxetan-3-yl)methoxy)pyrimidin-5-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 70)
  • Figure US20200071322A1-20200305-C00452
  • Compound 70 LC/MS ESI 510.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.74-8.69 (m, 2H), 7.13-7.11 (m, 1H), 6.36-6.33 (m, 1H), 4.80-4.72 (m, 1H), 4.70-4.50 (m, 6H), 3.50-3.30 (m, 3H), 3.22-3.00 (m, 2H), 2.80-2.60 (m, 3H), 2.50-2.40 (m, 2H), 2.35-2.00 (m, 2H), 1.92-1.82 (m, 2H), 1.62-1.48 (m, 3H), 1.42-1.22 (m, 9H).
    • 2-(4-cyclopropoxypyrimidin-5-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 71)
  • Figure US20200071322A1-20200305-C00453
  • Compound 71 LC/MS ESI 466.3 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.75 (d, J=8.4 Hz, 1H), 8.69 (d, J=8.4 Hz, 1H), 7.13-7.11 (m, 1H), 6.36-6.33 (m, 1H), 4.54-4.49 (m, 2H), 3.39-3.37 (m, 3H), 3.18-2.90 (m, 2H), 2.71-2.68 (m, 2H), 2.51-2.47 (m, 2H), 2.30-2.20 (m, 1H), 2.19-2.04 (m, 1H), 1.92-1.82 (m, 2H), 1.62-1.24 (m, 10H), 0.94-0.80 (m, 4H).
    • 2-(2-(cyclopropoxyphenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 72-E1 and 72-E2)
  • Figure US20200071322A1-20200305-C00454
  • Compound 72-E1 LC/MS ESI 496.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.42-7.40 (m, 1H), 7.36-7.30 (m, 2H), 6.97-6.95 (m, 1H), 6.20 (s, 1H), 4.91-4.85 (m, 1H), 4.10 (s, 1H), 3.78-3.71 (m, 4H), 3.43-3.38 (m, 4H), 3.22-2.94 (m, 3H), 2.51-2.48 (m, 4H), 2.03-1.57 (m, 8H), 0.73-0.62 (m, 3H).
  • Compound 72-E2 LC/MS ESI 496.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.44-7.42 (m, 1H), 7.35-7.33 (m, 2H), 6.96-6.94 (m, 1H), 6.17 (s, 1H), 4.85-4.82 (m, 1H), 4.09 (s, 1H), 3.86-3.77 (m, 4H), 3.40-3.37 (m, 3H), 3.25-3.13 (m, 5H), 2.52-2.48 (m, 4H), 2.12-1.51 (m, 8H), 0.81-0.64 (m, 4H).
    • 2-(5-fluoro-2-((3-methyloxetan-3-yloxy)methyl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 73-E1 and 73-E2)
  • Figure US20200071322A1-20200305-C00455
  • Compound 73-E1 LC/MS ESI 558.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.50 (br, 1H), 7.54-7.48 (m, 2H), 7.19-7.15 (m, 1H), 6.52 (s, 1H), 5.00 (s, 1H), 4.87 (d, J=10.8 Hz, 1H), 4.76-4.70 (m, 2H), 4.49-4.40 (m, 3H), 4.22 (s, 1H), 3.97 (s, 3H), 3.66-3.60 (m, 1H), 3.58-3.42 (m, 3H), 3.40-3.37 (m, 3H), 3.13-3.10 (m, 1H), 2.74-2.59 (m, 4H), 2.21-2.15 (m, 2H), 1.92-1.62 (m, 9H).
  • Compound 73-E2 LC/MS ESI 558.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 8.50 (br, 1H), 7.54-7.48 (m, 2H), 7.20-7.16 (m, 1H), 6.55 (s, 1H), 5.02-5.00 (s, 1H), 4.93-4.76 (m, 3H), 4.57-4.48 (m, 1H), 4.46-4.40 (m, 2H), 4.23 (s, 1H), 3.98 (s, 3H), 3.80-3.19 (m, 6H), 3.15-3.08 (m, 2H), 2.76-2.60 (m, 4H), 2.27-2.05 (m, 2H), 1.89-1.62 (m, 9H).
    • 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydrofuran-3-yl)phenyl)acetic acid (Compound 74)
  • Figure US20200071322A1-20200305-C00456
  • Compound 74: LC/MS ESI 480.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.63 (dd, J=13.4, 7.8 Hz, 1H), 7.47 (d, J=7.2 Hz, 1H), 7.39 (t, J=7.6 Hz, 1H), 7.28 (t, J=7.6 Hz, 1H), 7.17 (d, J=7.3 Hz, 1H), 6.40 (dd, J=7.3, 5.4 Hz, 1H), 4.99 (s, 1H), 4.23-4.14 (m, 2H), 4.13-4.06 (m, 1H), 4.06-3.96 (m, 1H), 3.95-3.80 (m, 2H), 3.75 (m, 1H), 3.52 (m, 2H), 3.40 (m, 3H), 3.30-2.99 (m, 3H), 2.72 (t, J=6.2 Hz, 2H), 2.57 (m, 2H), 2.38 (m, 1H), 2.06 (m, 3H), 1.89 (m, 2H), 1.79-1.68 (m, 2H), 1.67-1.57 (m, 2H).
    • 2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)-2-(2-(tetrahydro-2H-pyran-3-yl)phenyl)acetic acid (compound 75)
  • Figure US20200071322A1-20200305-C00457
  • Compound 75: LC/MS ESI 494.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.67 (t, J=7.9 Hz, 1H), 7.41 (d, J=7.9 Hz, 1H), 7.35 (t, J=7.5 Hz, 1H), 7.27 (t, J=7.5 Hz, 1H), 7.16 (d, J=7.3 Hz, 1H), 6.44-6.35 (m, 1H), 4.84 (s, 1H), 4.17 (d, J=23.7 Hz, 1H), 3.94 (m, 2H), 3.66-3.35 (m, 8H), 3.10 (m, 3H), 2.74-2.67 (m, 2H), 2.61-2.52 (m, 2H), 2.21-2.01 (m, 3H), 1.88 (m, 2H), 1.84-1.59 (m, 7H).
    • 2-(2-(3,3-difluorocyclobutyl)pyridin-2-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 76)
  • Figure US20200071322A1-20200305-C00458
  • Compound 76 LC/MS ESI 501.2 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.62-8.58 (m, 1H), 8.04-7.99 (m, 1H), 7.34-7.29 (m, 2H), 6.48 (d, J=7.3 Hz, 1H), 4.84-4.70 (m, 1H), 4.17 (s, 1H), 4.12-3.95 (m, 1H), 3.45-3.32 (m, 4H), 3.28-2.61 (m, 12H), 2.17-1.62 (m, 8H).
    • 2-(2-(trans-3-methoxycyclobutyl)pyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 77)
  • Figure US20200071322A1-20200305-C00459
  • Compound 77 LC/MS ESI 495.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.59-8.57 (m, 1H), 8.03-7.98 (m, 1H), 7.32-7.28 (m, 2H), 6.48 (t, J=7.3 Hz, 1H), 4.84-4.71 (m, 1H), 4.26-4.15 (m, 3H), 3.54-3.40 (m, 5H), 3.28 (s, 3H), 3.13-3.10 (m, 2H), 2.78-2.60 (m, 6H), 2.48-2.36 (m, 2H), 2.17-1.64 (m, 8H).
    • 2-(2-(cis-3-methoxycyclobutyl)pyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 78)
  • Figure US20200071322A1-20200305-C00460
  • Compound 78 LC/MS ESI 495.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.58-8.56 (m, 1H), 8.00 (dd, J=17.8, 7.9 Hz, 1H), 7.31-7.29 (m, 2H), 6.49-6.46 (m, 1H), 4.91-4.79 (m, 1H), 4.21-4.18 (m, 1H), 3.90-3.87 (m, 1H), 3.71-3.40 (m, 6H), 3.30-3.00 (m, 6H), 2.78-2.59 (m, 6H), 2.51-1.60 (m, 10H).
    • 2-(2-(tert-butoxymethyl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 79-E1 and 79-E2)
  • Figure US20200071322A1-20200305-C00461
  • Compound 79-E1 LC/MS ESI 526.2 (M+H)+1H NMR (400 MHz, MeOD) δ 7.67-7.65 (m, 1H), 7.44-7.38 (m, 3H), 6.36 (s, 1H), 4.96 (s, 1H), 4.83 (d, J=10.4 Hz, 1H), 4.47 (d, J=10.4 Hz, 1H), 4.20 (s, 1H), 3.91 (s, 3H), 3.79-3.42 (m, 4H), 3.39-3.36 (m, 2H), 3.35-3.31 (m, 1H), 3.09-3.07 (m, 1H), 2.64-2.58 (m, 4H), 2.20-2.12 (m, 2H), 1.86-1.62 (m, 6H), 1.29 (s, 9H).
  • Compound 79-E2 LC/MS ESI 526.2 (M+H)+ 1H NMR (400 MHz, MeOD) δ 7.62 (s, 1H), 7.42 (s, 3H), 6.49 (s, 1H), 4.96 (s, 1H), 4.76-4.75 (m, 1H), 4.61-4.55 (m, 1H), 4.24 (s, 1H), 3.96 (s, 3H), 3.64-3.42 (m, 3H), 3.40-3.30 (m, 3H), 3.25-3.15 (m, 2H), 2.79-2.58 (m, 4H), 2.29-2.21 (m, 1H), 2.13-2.02 (m, 1H), 1.96-1.62 (m, 6H), 1.33 (s, 9H).
    • 2-(5-fluoro-2-((l-methylcyclopropyl)methoxy)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 80-E1 and 80-E2)
  • Figure US20200071322A1-20200305-C00462
  • Compound 80-E1 LC/MS ESI 542.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.37-7.34 (m, 1H), 7.15-6.93 (m, 2H), 6.31-6.21 (m, 1H), 5.04 (s, 1H), 4.24-3.96 (m, 1H), 3.93-3.74 (m, 5H), 3.56-3.36 (m, 3H), 3.35-3.17 (m, 4H), 3.08-2.88 (m, 1H), 2.59-2.55 (m, 4H), 2.16-1.96 (m, 2H), 1.93-1.48 (m, 6H), 1.24 (s, 3H), 0.79-0.32 (m, 4H).
  • Compound 80-E2 LC/MS ESI 542.2 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.35-7.33 (m, 1H), 7.18-7.03 (m, 2H), 6.55 (s, 1H), 5.05 (s, 1H), 4.31 (s, 1H), 3.98-3.81 (m, 5H), 3.58-3.31 (m, 8H), 2.82-2.55 (m, 4H), 2.40-2.06 (m, 2H), 1.98-1.52 (m, 6H), 1.24 (s, 3H), 0.55-0.38 (m, 4H).
    • 2-(2-cyclopropoxy-5-fluorophenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (compound 81)
  • Figure US20200071322A1-20200305-C00463
  • Compound 81 LC/MS ESI 514 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.41-7.39 (m, 1H), 7.35-7.32 (m, 1H), 7.17-7.13 (m, 1H), 6.28 (s, 1H), 4.81 (s, 1H), 4.16 (s, 3H), 3.91-3.90 (m, 1H), 3.87 (s, 3H), 3.50-3.36 (m, 3H), 3.22-3.30 (m, 3H), 3.18-3.14 (m, 2H), 2.62-2.58 (m, 4H), 2.17-2.10 (m, 2H), 1.78-1.72 (m, 2H), 1.66-1.62 (m, 2H), 0.86-0.77 (m, 4H).
    • 2-(2-(2,2-dimethyltetrahydro-2H-pyran-4-yl)pyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 82-E1 and 82-E2)
  • Figure US20200071322A1-20200305-C00464
  • Compound 82-E1 LC/MS ESI 523.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.52-8.47 (m, 1H), 8.03-8.01 (m, 1H), 7.31-7.24 (m, 2H), 6.46 (t, J=6.8 Hz, 1H), 4.81-4.76 (m, 1H), 4.16 (s, 1H), 3.88-3.72 (m, 3H), 3.56-3.38 (m, 4H), 3.31-2.99 (m, 4H), 2.78-2.60 (m, 4H), 2.11-1.62 (m, 12H), 1.40-1.38 (m, 3H), 1.26 (s, 3H).
  • Compound 82-E2 LC/MS ESI 523.3 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.52-8.46 (m, 1H), 8.08-8.02 (m, 1H), 7.30-7.24 (m, 2H), 6.46-6.44 (m, 1H), 4.76-4.66 (m, 1H), 4.14 (s, 1H), 3.81-3.64 (m, 3H), 3.54-3.37 (m, 4H), 3.15-2.95 (m, 4H), 2.78-2.59 (m, 4H), 2.06-1.59 (m, 12H), 1.39-1.36 (m, 3H), 1.27-1.26 (m, 3H).
    • 2-(5-fluoro-2-((oxetan-3-yloxy)methyl)phenyl)-2-((R)-3-((S)-1-fluoro-5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 83)
  • Figure US20200071322A1-20200305-C00465
  • Compound 83 LC/MS ESI 526 (M+H)+1H NMR (400 MHz, MeOD) δ 7.49-7.44 (m, 2H), 7.15-7.11 (m, 2H), 6.36-6.33 (m, 1H), 4.85-4.82 (m, 1H), 4.50-4.35 (m, 2H), 4.10-3.39 (m, 8H), 3.22-2.98 (m, 2H), 2.71-2.68 (m, 2H), 2.52-2.02 (m, 6H), 1.90-1.86 (m, 2H), 1.71-1.24 (m, 10H).
    • 2-(2-cyclopropylphenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy) pyrrolidin-1-yl)acetic acid (compound 84)
  • Figure US20200071322A1-20200305-C00466
  • Compound 84 LC/MS ESI 464.2 (M+H)+1H NMR (500 MHz, MeOD) δ 7.70-7.57 (m, 2H), 7.35-7.24 (m, 4H), 7.21-7.10 (m, 4H), 6.38 (dd, J=7.3, 5.5 Hz, 2H), 5.35 (s, 1H), 5.21 (s, 1H), 4.20 (d, J=23.0 Hz, 2H), 3.66-3.35 (m, 10H), 3.28-3.01 (m, 6H), 2.75-2.63 (m, 4H), 2.60-2.46 (m, 4H), 2.30-2.01 (m, 6H), 1.93-1.83 (m, 4H), 1.74-1.53 (m, 8H), 1.53-1.36 (m, 4H), 1.08-0.92 (m, 6H), 0.65-0.54 (m, 2H).
    • 2-(4-cyclopropylpyridin-3-yl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (Compound 85)
  • Figure US20200071322A1-20200305-C00467
  • Compound 85 LC/MS ESI 464.9 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.74 (d, J=22.7 Hz, 1H), 8.24 (d, J=5.3 Hz, 1H), 7.14 (m, 1H), 6.92 (d, J=4.6 Hz, 1H), 6.35 (m, 1H), 4.55 (d, J=47.6 Hz, 1H), 4.05 (d, J=18.7 Hz, 1H), 3.38 (m, 4H), 2.84-2.37 (m, 8H), 2.15-1.99 (m, 1H), 1.84 (s, 3H), 1.72-1.42 (m, 5H), 1.37 (d, J=6.0 Hz, 2H), 1.18-1.04 (m, 2H), 1.01-0.89 (m, 1H), 0.69-0.57 (m, 1H).
    • 2-(2-(1,1-difluoroethyl)phenyl)-2-((R)-3-((5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)oxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 86-E1 and 86-E2)
  • Figure US20200071322A1-20200305-C00468
  • Compound 86-E1 LC/MS ESI 488.2 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.87 (d, J=7.7 Hz, 1H), 7.67 (d, J=7.8 Hz, 1H), 7.55 (m, 2H), 7.16 (d, J=7.3 Hz, 1H), 6.39 (d, J=7.3 Hz, 1H), 5.09 (s, 1H), 4.20 (s, 1H), 3.62 (s, 1H), 3.50-3.42 (m, 2H), 3.38 (m, 2H), 3.21 (m, 2H), 3.03 (s, 1H), 2.71 (m, 2H), 2.61-2.50 (m, 2H), 2.19 (m, 4H), 2.04 (s, 1H), 1.94-1.80 (m, 2H), 1.76-1.53 (m, 4H), 1.44 (m, 2H).
  • Compound 86-E2 LC/MS ESI 488.2 (M+H)+ 1H NMR (500 MHz, MeOD) δ 7.95 (d, J=7.6 Hz, 1H), 7.66 (d, J=7.7 Hz, 1H), 7.53 (m, 2H), 7.24 (d, J=7.2 Hz, 1H), 6.42 (d, J=7.3 Hz, 1H), 4.17 (s, 1H), 3.59 (s, 1H), 3.49-3.42 (m, 2H), 3.41-3.36 (m, 2H), 3.09 (d, J=12.7 Hz, 3H), 2.73 (t, J=6.2 Hz, 2H), 2.58 (m, 2H), 2.20 (m, 4H), 2.06 (s, 1H), 1.94-1.84 (m, 2H), 1.80-1.63 (m, 2H), 1.58 (s, 3H), 1.50-1.36 (m, 2H).
    • 2-(2-cyclopropyl-5-methylpyridin-3-yl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compound 87)
  • Figure US20200071322A1-20200305-C00469
  • Compound 87: LC/MS ESI 465.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 8.21 (dd, J=5.4, 1.7 Hz, 1H), 7.86 (dd, J=15.8, 1.6 Hz, 1H), 7.26-7.16 (m, 1H), 6.40 (d, J=7.3 Hz, 1H), 5.00 (s, 1H), 4.93 (s, 1H), 4.20-4.11 (m, 1H), 3.47 (m, 2H), 3.38 (m, 2H), 3.33 (m, 1H), 3.19-2.88 (m, 3H), 2.72 (t, J=6.1 Hz, 2H), 2.58 (m, 2H), 2.54-2.40 (m, 1H), 2.28 (d, J=5.5 Hz, 3H), 2.20-2.01 (m, 2H), 1.92-1.84 (m, 2H), 1.75-1.66 (m, 2H), 1.59 (m, 2H), 1.20 (m, 1H), 1.04-0.92 (m, 2H), 0.91-0.82 (m, 1H).
    • 2-(5-fluoro-2-(2-methoxyethoxy)phenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (compound 88)
  • Figure US20200071322A1-20200305-C00470
  • Compound 88 LC/MS A: 95% purity, UV=214 nm, Rt=1.406 min, ESI 500.7 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.32 (td, J=9.0, 3.0 Hz, 1H), 7.21-7.03 (m, 3H), 6.36 (dd, J=7.3, 4.1 Hz, 1H), 4.98 (s, 1H), 4.29-4.16 (m, 2H), 3.81 (t, J=4.3 Hz, 2H), 3.46 (d, J=2.2 Hz, 3H), 3.41-3.37 (m, 2H), 3.32 (s, 2H), 3.16 (d, J=31.1 Hz, 2H), 2.71 (t, J=6.2 Hz, 2H), 2.51 (td, J=7.6, 4.4 Hz, 2H), 2.45-2.16 (m, 2H), 1.98-1.84 (m, 2H), 1.64 (m, 3H), 1.40 (m, 6H).
    • 2-(2-(2-methoxyethoxy)phenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyl)pyrrolidin-1-yl)acetic acid (Compound 89)
  • Figure US20200071322A1-20200305-C00471
  • Compound 89: LC/MS ESI 482.2 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.56 (s, 1H), 7.51 (d, J=7.5 Hz, 1H), 7.48-7.42 (m, 1H), 7.18 (dd, J=8.2, 4.6 Hz, 1H), 7.12 (t, J=7.5 Hz, 1H), 6.59 (s, 1H), 5.43 (s, 1H), 4.31-4.25 (m, 2H), 4.19-3.96 (m, 1H), 3.82-3.77 (m, 2H), 3.48 (m, 6H), 3.35-3.30 (m, 1H), 3.23-2.92 (m, 2H), 2.81 (d, J=5.3 Hz, 2H), 2.74-2.62 (m, 2H), 2.25 (m, 2H), 1.99-1.90 (m, 2H), 1.80-1.63 (m, 3H), 1.57-1.29 (m, 6H).
    • 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 90-E1 and 90-E2)
  • Figure US20200071322A1-20200305-C00472
  • Compound 90-E1 (mixture of 2 isomers) LC/MS ESI 498.1 (M+H)+. 1H NMR (500 MHz, MeOD)1H NMR (500 MHz, MeOD) δ 7.46 (dd, J=8.8, 5.9 Hz, 1H), 7.38-7.26 (m, 1H), 7.12-6.97 (m, 2H), 6.30 (d, J=7.3 Hz, 1H), 5.13 (m, 1H), 4.90 (s, 1H), 4.07 (d, J=15.0 Hz, 1H), 3.95 (m, 1H), 3.83-3.70 (m, 1H), 3.46-3.31 (m, 3H), 3.27 (m, 2H), 3.14-2.88 (m, 2H), 2.61 (t, J=6.2 Hz, 2H), 2.47 (m, 2H), 2.33 (m, 1H), 2.08-1.83 (m, 5H), 1.77 (m, 2H), 1.63 (m, 2H), 1.55-1.45 (m, 2H).
  • Compound 90-E2 (mixture of 2 isomers) LC/MS ESI 498.1 (M+H)+. 1H NMR (500 MHz, MeOD1H NMR (500 MHz, MeOD) δ 7.46-7.31 (m, 2H), 7.00 (dd, J=30.9, 7.6 Hz, 1H), 6.87 (d, J=7.7 Hz, 1H), 6.27 (d, J=7.3 Hz, 1H), 5.22 (m, 1H), 4.53 (m, 1H), 4.29 (m, 1H), 4.05-3.92 (m, 1H), 3.77 (d, J=6.5 Hz, 1H), 3.71-3.55 (m, 2H), 3.32 (m, 5H), 3.06 (t, J=9.7 Hz, 1H), 2.63 (m, 5H), 2.48-2.26 (m, 3H), 1.93 (m, 2H), 1.85-1.73 (m, 4H), 1.52-1.48 (m, 2H).
    • 2-(5-fluoro-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 91-A-E1, 91-A-E2, 91-B-E1 and 91-B-E2)
  • Figure US20200071322A1-20200305-C00473
  • Compound 91-A-E1 LC/MS A: 99% purity, UV=214 nm, Rt=1.64 min, ESI 542.7 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.53 (m, 2H), 7.09 (d, J=2.6 Hz, 1H), 6.30 (s, 1H), 4.87 (s, 1H), 4.60 (s, 1H), 4.12 (s, 1H), 4.03 (s, 1H), 3.87 (s, 3H), 3.72 (d, J=2.5 Hz, 1H), 3.55-3.40 (m, 2H), 3.30 (m, 4H), 3.07-2.95 (m, 2H), 2.74-2.53 (m, 4H), 2.18-2.09 (m, 1H), 2.08-1.93 (m, 3H), 1.74 (m, 10H).
  • Compound 91-B-E1 LC/MS A: 100% purity, UV=214 nm, Rt=1.62 min, ESI 542.7 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.52 (m, 2H), 7.11 (d, J=2.7 Hz, 1H), 6.30 (s, 1H), 4.89-4.72 (m, 3H), 4.16 (d, J=2.7 Hz, 1H), 4.02 (s, 1H), 3.87 (s, 3H), 3.70 (d, J=2.2 Hz, 1H), 3.48 (m, 3H), 3.25 (m, 1H), 3.13 (d, J=12.2 Hz, 1H), 2.99-2.85 (m, 1H), 2.60 (m, 4H), 2.08-1.96 (m, 4H), 1.88-1.60 (m, 11H).
  • Compound 91-B-E2 LC/MS A: 95% purity, UV=214 nm, Rt=1.66 min, ESI 542.7 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.47-7.41 (m, 2H), 7.06 (m, 1H), 6.33 (s, 1H), 4.86 (dd, J=13.9, 10.6 Hz, 3H), 4.15-4.06 (m, 2H), 3.73-3.64 (m, 1H), 3.55-3.39 (m, 3H), 3.29 (m, 2H), 3.09-2.92 (m, 3H), 2.71-2.56 (m, 4H), 2.19-1.56 (m, 16H).
    • 2-(2-(6,6-dimethyltetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 103-E1 and 103-E2)
  • Figure US20200071322A1-20200305-C00474
  • Compound 103-E1 (mixture of 2 stereoisomers) LC/MS ESI 522 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.72-7.70 (m, 1H), 7.62-7.59 (m, 1H), 7.45-7.35 (m, 2H), 7.21-7.19 (m, 1H), 6.38-6.35 (m, 1H), 5.21-5.19 (m, 1H), 4.92-4.90 (m, 1H), 4.23-4.21 (m, 1H), 3.81-3.61 (m, 1H), 3.51-2.91 (m, 7H), 2.62-2.59 (m, 2H), 2.51-2.49 (m, 2H), 2.18-1.48 (m, 14H), 1.31-1.29 (m, 3H), 1.23-1.21 (m, 3H).
  • Compound 103-E2 (mixture of 2 stereoisomers) LC/MS ESI 522 (M+H)+. 1H NMR (500 MHz, MeOD) δ 7.70-7.65 (m, 1H), 7.35-7.32 (m, 3H), 7.14 (d, J=7.2 Hz, 1H), 6.37-6.35 (m, 1H), 5.51-5.49 (m, 1H), 4.98-4.92 (m, 1H), 4.18-4.16 (m, 1H), 3.51-3.31 (m, 4H), 3.29-2.81 (m, 4H), 2.72-2.68 (m, 2H), 2.54-2.51 (m, 2H), 2.18-1.48 (m, 14H), 1.34-1.31 (m, 6H).
    • 2-(2-(4,4-dimethyltetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 104-E1 and 104-E2)
  • Figure US20200071322A1-20200305-C00475
  • Compound 104-E1 (mixture of 2 stereoisomers) LC/MS ESI 526 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.63-7.59 (m, 1H), 7.48-7.45 (dd, J=2.8 Hz, J=10.4 Hz 1H), 7.18-7.14 (m, 2H), 6.38 (d, J=7.1 Hz, J 1H), 5.46-5.42 (m, 1H), 4.82 (m, 1H), 4.15-4.14 (m, 1H), 3.75-3.73 (m, 1H), 3.63-3.61 (m, 1H), 3.49-3.32 (m, 5H), 3.23-3.12 (m, 2H), 2.75-2.71 (m, 2H), 2.57-2.54 (m, 2H), 2.37-2.33 (m, 1H), 2.14 (m, 2H), 1.89-1.85 (m, 2H), 1.79-1.60 (m, 6H), 1.21 (s, 3H), 1.16 (s, 3H). Chiral SFC E (45% MeOH): ee 100%, Rt=3.86 min.
  • Compound 104-E2 (mixture of 2 stereoisomers) LC/MS ESI 526 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.61-7.58 (m, 1H), 7.47-7.44 (dd, J=2.8 Hz, J=10.4 Hz 1H), 7.16-7.11 (m, 2H), 6.38 (d, J=7.1 Hz, J 1H), 5.46-5.42 (m, 1H), 4.81 (m, 1H), 4.16-4.15 (m, 1H), 3.75-3.73 (m, 1H), 3.63-3.61 (m, 1H), 3.47-3.31 (m, 5H), 3.22-3.11 (m, 2H), 2.94 (m, 1H), 2.72-2.69 (m, 1H), 2.56-2.53 (m, 2H), 2.35-2.31 (m, 1H), 2.09-2.07 (m, 2H), 1.91-1.77 (m, 2H), 1.75-1.69 (m, 3H), 1.65-1.60 (m, 2H), 1.20 (s, 3H), 1.16 (s, 3H). Chiral SFC E (45% MeOH): ee 98%, Rt=4.89 min.
    • 2-(4-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 105-E1 and 105-E2)
  • Figure US20200071322A1-20200305-C00476
  • Compound 105-E1 (mixture of 2 stereoisomers) LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.80-7.70 (m, 1H), 7.27-7.24 (m, 1H), 7.13 (d, J=8.0 Hz, 1H), 7.10-7.05 (m, 1H), 6.38-6.36 (m, 1H), 4.87-4.65 (m, 2H), 4.16-4.03 (m, 2H), 3.70-3.67 (m, 1H), 3.49-3.36 (m, 5H), 3.25-3.15 (m, 1H), 3.10-2.85 (m, 2H), 2.70 (t, J=6.4 Hz, 2H), 2.54 (t, J=8.0 Hz, 2H), 2.20-1.80 (m, 6H), 1.78-1.55 (m, 8H).
  • Compound 105-E2 (mixture of 2 stereoisomers) LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.75-7.60 (m, 1H), 7.22-7.18 (m, 2H), 7.17-7.00 (m, 1H), 6.39-6.36 (m, 1H), 5.25-4.94 (m, 1H), 4.81-4.58 (m, 1H), 4.20-4.05 (m, 2H), 3.80-3.36 (m, 7H), 3.25-2.95 (m, 2H), 2.71 (t, J=6.4 Hz, 2H), 2.56 (t, J=3.6 Hz, 2H), 2.20-2.00 (m, 2H), 1.99-1.80 (m, 5H), 1.98-1.54 (m, 7H).
    • 2-(2-fluoro-6-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 106-E1 and 106-E2)
  • Figure US20200071322A1-20200305-C00477
  • Compound 106-E1 (mixture of 2 stereoisomers) LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.35-7.29 (m, 2H), 7.13-7.05 (m, 2H), 6.35 (d, J=8.0 Hz, 1H), 5.18-5.12 (m, 1H), 4.74 (s, 1H), 4.70 (s, 1H), 4.01 (d, J=12.0 Hz, 1H), 3.78-3.61 (m, 1H), 3.54-3.36 (m, 4H), 3.24-2.82 (m, 3H), 2.71-2.68 (m, 2H), 2.53-2.48 (m, 2H), 2.19-2.17 (m, 2H), 2.03-2.00 (m, 1H), 1.94-1.84 (m, 4H), 1.72-1.52 (m, 8H).
  • Compound 106-E2 (mixture of 2 stereoisomers) LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.35-7.29 (m, 2H), 7.13-7.05 (m, 2H), 6.35 (d, J=8.0 Hz, 1H), 5.18-5.12 (m, 1H), 4.72 (s, 1H), 4.05-3.99 (m, 2H), 3.78-3.61 (m, 1H), 3.44-3.36 (m, 4H), 3.24-2.82 (m, 2H), 2.71-2.68 (m, 3H), 2.53-2.48 (m, 2H), 2.19-2.18 (m, 2H), 2.03-2.00 (m, 1H), 1.90-1.86 (m, 4H), 1.69-1.54 (m, 8H).
    • 2-(5-fluoro-2-(5-oxaspiro[2.4]heptan-6-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 107-E1 and 107-E2)
  • Figure US20200071322A1-20200305-C00478
  • Compound 107-E1 (mixture of 2 stereoisomers) LC/MS ESI 524 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.30 (bs, 1H), 7.58-7.54 (m, 1H), 7.40-7.35 (m, 2H), 7.11-7.06 (m, 1H), 6.46 (d, J=7.2 Hz, 1H), 5.43-5.40 (m, 1H), 4.95 (s, 1H), 4.13-4.11 (m, 1H), 3.86-3.84 (m, 1H), 3.66-3.64 (m, 1H), 3.50-3.31 (m, 6H), 3.31-3.20 (m, 2H), 2.72-2.51 (m, 4H), 2.18-2.03 (m, 4H), 1.81-1.59 (m, 6H), 0.60-0.48 (m, 4H). Chiral SFC E (45% MeOH): ee 100%, Rt=4.74 min.
  • Compound 107-E2 (mixture of 2 stereoisomers) LC/MS ESI 524 (M+H)+. 1H NMR (500 MHz, MeOD) δ 8.53 (bs, 1H), 7.70-7.67 (m, 1H), 7.52-7.46 (m, 2H), 7.24-7.20 (m, 1H), 6.58 (d, J=7.2 Hz, 1H), 5.49-5.45 (m, 1H), 5.20 (s, 1H), 4.23-4.21 (m, 1H), 3.96-3.91 (m, 1H), 3.75-3.71 (m, 1H), 3.71-3.31 (m, 7H), 3.31-3.20 (m, 1H), 2.82-2.61 (m, 4H), 2.18-2.03 (m, 4H), 1.81-1.59 (m, 6H), 0.70-0.58 (m, 4H). Chiral SFC E (45% MeOH): ee 100%, Rt=6.51 min.
    • 2-(5-fluoro-2-(6-oxaspiro[2.5]octan-5-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 108-E1 and 108-E2)
  • Figure US20200071322A1-20200305-C00479
  • Compound 108-E1 (mixture of 2 stereoisomers) LC/MS ESI 538.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.55-7.40 (m, 1H), 7.39-7.31 (m, 1H), 7.15-7.01 (m, 2H), 6.28 (d, J=7.2 Hz, 1H), 4.84 (s, 1H), 4.18-4.14 (m, 1H), 4.00-3.85 (m, 1H), 3.80-3.60 (m, 1H), 3.58-3.43 (m, 1H), 3.42-3.35 (m, 2H), 3.33-3.23 (m, 3H), 3.20-3.11 (m, 1H), 2.95-2.90 (m, 1H), 2.60 (t, J=6.4 Hz, 2H), 2.45 (t, J=7.6 Hz, 2H), 2.20-1.85 (m, 4H), 1.83-1.73 (m, 2H), 1.70-1.40 (m, 4H), 1.25-1.15 (m, 2H), 0.80-0.60 (m, 1H), 0.50-0.40 (m, 1H), 0.39-0.20 (m, 3H). Chiral SFC H (40% EtOH): ee 100%, Rt=2.10 min.
  • Compound 108-E2 (mixture of 2 stereoisomers) LC/MS ESI 538.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.55-7.43 (m, 1H), 7.41-7.30 (m, 1H), 7.20-6.90 (m, 2H), 6.40-6.20 (m, 1H), 4.70 (s, 1H), 4.20-4.05 (m, 1H), 4.00-3.85 (m, 1H), 3.80-3.60 (m, 1H), 3.58-3.22 (m, 6H), 3.20-2.90 (m, 2H), 2.70-2.55 (m, 2H), 2.50-2.38 (m, 2H), 2.20-1.90 (m, 4H), 1.83-1.73 (m, 2H), 1.70-1.40 (m, 4H), 1.25-1.15 (m, 2H), 0.80-0.60 (m, 1H), 0.50-0.40 (m, 1H), 0.39-0.20 (m, 3H). Chiral SFC H (40% EtOH): ee 100%, Rt=2.51 min.
    • 2-(2-(1,4-dioxan-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 109-E1 and 109-E2)
  • Figure US20200071322A1-20200305-C00480
  • Compound 109-E1 (mixture of 2 stereoisomers) LC/MS ESI 514 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.61-7.59 (m, 1H), 7.52-7.48 (m, 1H), 7.22-7.20 (m, 1H), 7.16-7.14 (m, 1H), 6.42-6.40 (m, 1H), 5.21-5.02 (m, 1H), 4.78-4.75 (m, 1H), 4.30-4.26 (m, 1H), 4.20-4.17 (m, 1H), 3.81-3.75 (m, 2H), 3.73-3.68 (m, 2H), 3.50-3.31 (m, 6H), 3.20-2.98 (m, 3H), 2.72-2.68 (m, 2H), 2.54-2.51 (m, 2H), 2.18-2.03 (m, 2H), 1.81-1.59 (m, 6H).
  • Compound 109-E2 (mixture of 2 stereoisomers) LC/MS ESI 514 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.51-7.49 (m, 2H), 7.32-7.29 (m, 1H), 7.22-7.18 (m, 1H), 6.42-6.39 (m, 1H), 5.30-4.96 (m, 2H), 4.20-4.17 (m, 1H), 3.91-3.70 (m, 6H), 3.52-3.31 (m, 6H), 3.20-2.98 (m, 3H), 2.72-2.68 (m, 2H), 2.54-2.51 (m, 2H), 2.18-2.03 (m, 2H), 1.81-1.56 (m, 6H).
    • 2-(2-(4,4-difluorotetrahydrofuran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 110-E1 and 110-E2)
  • Figure US20200071322A1-20200305-C00481
  • Compound 110-E1 (mixture of 2 stereoisomers) LC/MS ESI 534.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.80-7.60 (m, 1H), 7.55-7.45 (m, 1H), 7.35-7.15 (m, 2H), 6.43 (d, J=7.2 Hz, 1H), 5.75-5.60 (m, 1H), 4.77 (s, 1H), 4.30-4.05 (m, 2H), 4.04-3.90 (m, 1H), 3.60-3.50 (m, 1H), 3.45-3.30 (m, 4H), 3.25-2.95 (m, 4H), 2.80-2.70 (m, 2H), 2.65-2.30 (m, 3H), 2.25-2.05 (m, 2H), 1.95-1.85 (m, 2H), 1.80-1.55 (m, 4H). Chiral SFC F (30% MeOH): ee 100%, Rt=4.16 min.
  • Compound 110-E2 (mixture of 2 stereoisomers) LC/MS ESI 534.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.75-7.68 (m, 1H), 7.65-7.40 (m, 1H), 7.35-7.15 (m, 2H), 6.50-6.40 (m, 1H), 5.70-5.40 (m, 1H), 4.78 (s, 1H), 4.40-4.10 (m, 2H), 4.05-3.80 (m, 1H), 3.60-3.45 (m, 2H), 3.42-3.38 (m, 3H), 3.30-2.80 (m, 4H), 2.78-2.70 (m, 2H), 2.65-2.40 (m, 3H), 2.20-2.00 (m, 2H), 1.95-1.85 (m, 2H), 1.80-1.55 (m, 4H). Chiral SFC F (30% MeOH): ee 100%, Rt=5.04 min.
    • 2-(5-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 111-E1 and 111-E2)
  • Figure US20200071322A1-20200305-C00482
  • Compound 111-E1 LC/MS ESI 512.3 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.62-7.58 (m, 1H), 7.48-7.46 (m, 1H), 7.22-7.15 (m, 2H), 6.41 (d, J=7.0 Hz, 1H), 4.85-4.79 (m, 2H), 4.18 (s, 1H), 4.05-4.02 (m, 1H), 3.75-3.71 (m, 1H), 3.56-3.31 (m, 6H), 3.21-3.16 (m, 2H), 2.74-2.57 (m, 4H), 2.18-1.62 (m, 14H).
  • Compound 111-E2 LC/MS ESI 512.3 (M+H)+, 1H NMR (500 MHz, MeOD) δ 7.62-7.58 (m, 1H), 7.48-7.46 (m, 1H), 7.22-7.15 (m, 2H), 6.62-6.60 (m, 1H), 6.00 (br, 1H), 4.65-4.61 (m, 1H), 4.25-4.12 (m, 2H), 3.55-3.31 (m, 8H), 2.84-2.65 (m, 5H), 2.18-1.62 (m, 14H).
    • 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (THF Stereoisomer A, Diastereomeric Compounds 112-A-E1 and 112-A-E2)
  • Figure US20200071322A1-20200305-C00483
  • Compound 112-A-E1 LC/MS ESI 528.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 8.53 (s, 1H), 7.60-7.58 (m, 1H), 7.47-7.45 (m, 1H), 7.19-7.15 (m, 1H), 6.49 (s, 1H), 5.20-5.09 (m, 2H), 4.20 (s, 1H), 4.10-4.05 (m, 1H), 3.96 (s, 3H), 3.90-3.81 (m, 1H), 3.56-3.31 (m, 6H), 3.16-3.10 (m, 1H), 2.74-2.69 (m, 4H), 2.40 (s, 1H), 2.08-1.62 (m, 12H).
  • Compound 112-A-E2 LC/MS ESI 528.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 8.59 (s, 4H), 7.50-7.40 (m, 2H, 7.19-7.15 (m, 1H), 6.49 (s, 1H), 5.16-5.12 (m, 1H), 4.20-4.10 (m, 2H), 3.96 (s, 3H), 3.90-3.81 (m, 1H), 3.56-3.31 (m, 4H), 3.19-3.01 (m, 4H), 2.75-2.69 (m, 4H), 2.40 (s, 1H), 2.20 (s, 1H), 2.09-1.98 (m, 4H), 1.92-1.62 (m, 7H).
    • 2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((S)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 113-E1 and 113-E2)
  • Figure US20200071322A1-20200305-C00484
  • Compound 113-E1 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.45 (s, 1H), 7.63-7.59 (m, 1H), 7.46 (d, J=8.0 Hz, 2H), 7.21-7.19 (m, 1H), 6.55 (d, J=8.0 Hz, 1H), 5.11 (s, 1H), 4.74 (d, J=8.0 Hz, 1H), 4.34 (s, 1H), 4.06 (d, J=8.0 Hz, 1H), 3.72-3.71 (m, 1H), 3.58-3.33 (m, 6H), 3.15 (s, 1H), 2.81-2.67 (m, 4H), 2.18 (s, 2H), 2.03-1.58 (m, 13H).
  • Compound 113-E2 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.45 (s, 1H), 7.47-7.45 (m, 2H), 7.21-7.19 (m, 1H), 7.16-7.11 (m, 1H), 6.43 (d, J=8.0 Hz, 1H), 5.25 (s, 1H), 4.89 (d, J=8.0 Hz, 1H), 4.19 (s, 1H), 4.10 (d, J=8.0 Hz, 1H), 3.58-3.33 (m, 6H), 3.15-3.12 (m, 2H), 2.75-2.72 (m, 2H), 2.63-2.59 (m, 2H), 2.18-2.16 (m, 2H), 2.03-1.58 (m, 13H).
    • 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(4-(7-methyl-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (THF Stereoisomer A, Me Stereoisomers A and B, Diastereomeric Compounds 114-A-E1, 114-A-E2, 114-B-E1 and 114-B-E2)
  • Figure US20200071322A1-20200305-C00485
  • Compound 114-A-E1 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.56-7.49 (m, 2H), 7.18 (d, J=8.0 Hz, 1H) 7.08-7.06 (m, 1H), 6.41 (d, J=8.0 Hz, 1H), 5.33-5.30 (m, 1H), 4.95 (s, 2H), 4.59 (s, 1H), 4.16-4.05 (m, 2H), 3.92-3.85 (m, 1H), 3.59-3.40 (m, 3H), 3.03-2.82 (m, 2H), 2.75-2.72 (m, 3H), 2.57-2.42 (m, 3H), 2.07-2.01 (m, 3H), 2.00-1.82 (m, 3H), 1.75-1.65 (m, 2H), 1.62-1.59 (m, 2H), 1.57-1.55 (m, 1H), 1.22 (d, J=10.8 Hz, 3H).
  • Compound 114-A-E2 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.51-7.41 (m, 2H), 7.22 (d, J=8.0 Hz, 1H) 7.11-7.08 (m, 1H), 6.42 (d, J=8.0 Hz, 1H), 5.23-5.21 (m, 1H), 4.95 (s, 1H), 4.79 (s, 1H), 4.16-4.05 (m, 2H), 3.92-3.85 (m, 1H), 3.59-3.40 (m, 3H), 3.13-3.03 (m, 3H), 2.75-2.72 (m, 2H), 2.64-2.58 (m, 2H), 2.47-2.42 (m, 1H), 2.07-1.82 (m, 6H), 1.75-1.65 (m, 2H), 1.62-1.59 (m, 2H), 1.57-1.55 (m, 1H), 1.22 (d, J=10.8 Hz, 3H).
  • Compound 114-B-E1 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.56-7.49 (m, 2H), 7.18 (d, J=8.0 Hz, 1H) 7.08-7.06 (m, 1H), 6.41 (d, J=8.0 Hz, 1H), 5.33-5.30 (m, 1H), 4.95 (s, 2H), 4.59 (s, 1H), 4.16-4.05 (m, 2H), 3.92-3.85 (m, 1H), 3.59-3.40 (m, 3H), 3.03-2.82 (m, 2H), 2.75-2.72 (m, 3H), 2.57-2.42 (m, 3H), 2.07-2.01 (m, 3H), 2.00-1.82 (m, 3H), 1.75-1.65 (m, 2H), 1.62-1.59 (m, 2H), 1.57-1.55 (m, 1H), 1.22 (d, J=10.8 Hz, 3H).
  • Compound 114-B-E2 LC/MS ESI 512.3 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.51-7.41 (m, 2H), 7.22 (d, J=8.0 Hz, 1H) 7.11-7.08 (m, 1H), 6.42 (d, J=8.0 Hz, 1H), 5.23-5.21 (m, 1H), 4.95 (s, 1H), 4.79 (s, 1H), 4.16-4.05 (m, 2H), 3.92-3.85 (m, 1H), 3.59-3.40 (m, 3H), 3.13-3.03 (m, 3H), 2.75-2.72 (m, 2H), 2.64-2.58 (m, 2H), 2.47-2.42 (m, 1H), 2.07-1.82 (m, 6H), 1.75-1.65 (m, 2H), 1.62-1.59 (m, 2H), 1.57-1.55 (m, 1H), 1.22 (d, J=10.8 Hz, 3H).
    • 2-(2-(2,2-difluoro-6-oxaspiro[3.5]nonan-7-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 115-A-E1, 115-A-E2, 115-B-E1 and 115-B-E2)
  • Figure US20200071322A1-20200305-C00486
  • Compound 115-A-E1 LC/MS ESI 588.3 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.60-7.55 (m, 1H), 7.50-7.20 (m, 1H), 7.20-7.05 (m, 2H), 6.39 (d, J=7.2 Hz, 1H), 4.88-4.80 (m, 1H), 4.75 (s, 1H), 4.25-4.15 (m, 1H), 3.90-3.75 (m, 1H), 3.70-3.60 (m, 1H), 3.58-3.45 (m, 3H), 3.42-3.38 (m, 2H), 3.35-3.18 (m, 1H), 3.17-3.05 (m, 1H), 3.00-2.85 (m, 1H), 2.80-2.70 (m, 2H), 2.65-2.50 (m, 3H), 2.45-2.38 (m, 1H), 2.35-2.15 (m, 2H), 2.10-1.85 (m, 7H), 1.83-1.55 (m, 5H).
  • Compound 115-A-E2 LC/MS ESI 588.3 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.60-7.40 (m, 2H), 7.30-7.20 (m, 1H), 7.18-7.05 (m, 1H), 6.42 (d, J=7.2 Hz, 1H), 5.04 (s, 1H), 4.75 (d, J=10.4 Hz, 1H), 4.20-4.10 (m, 1H), 3.95-3.85 (m, 1H), 3.75-3.60 (m, 1H), 3.59-3.50 (m, 2H), 3.48-3.38 (m, 3H), 3.20-3.18 (m, 2H), 2.80-2.70 (m, 2H), 2.68-2.40 (m, 4H), 2.38-2.20 (m, 2H), 2.18-2.00 (m, 3H), 1.98-1.58 (m, 10H).
  • Compound 115-B-E1 LC/MS ESI 588 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.58-7.48 (m, 2H), 7.19-7.14 (m, 2H), 6.40 (d, J=7.2 Hz, 1H), 4.91-4.77 (m, 2H), 4.16-4.15 (m, 1H), 3.82-3.80 (m, 1H), 3.72-3.70 (m, 1H), 3.50-3.31 (m, 6H), 3.31-3.20 (m, 2H), 2.72-2.41 (m, 6H), 2.31-2.25 (m, 2H), 2.20-1.60 (m, 12H).
  • Compound 115-B-E2 LC/MS ESI 588 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.46-7.43 (m, 2H), 7.19-7.14 (m, 2H), 6.39 (d, J=7.2 Hz, 1H), 5.21-5.19 (m, 1H), 4.71-4.69 (m, 1H), 4.19-4.17 (m, 1H), 3.87-3.84 (m, 1H), 3.66-3.64 (m, 1H), 3.40-3.31 (m, 4H), 3.31-2.98 (m, 2H), 2.76-2.50 (m, 6H), 2.28-2.25 (m, 2H), 2.20-1.60 (m, 14H).
    • 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 116-E1 and 116-E2)
  • Figure US20200071322A1-20200305-C00487
  • Compound 116-E1 (mixture of 2 stereoisomers) LC/MS ESI 530.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.70-7.55 (m, 1H), 7.50-7.40 (m, 1H), 7.38-7.20 (m, 2H), 7.10-7.00 (m, 1H), 6.26 (d, J=7.6 Hz, 1H), 4.90 (d, J=10.8 Hz, 1H), 4.72 (s, 1H), 4.10-4.00 (m, 1H), 3.98-3.85 (m, 1H), 3.80-3.65 (m, 1H), 3.60-3.25 (m, 5H), 3.18-3.05 (m, 2H), 2.65-2.55 (m, 2H), 2.50-2.38 (m, 2H), 2.35-1.40 (m, 13H). Chiral SFC F (45% EtOH): ee 100%, Rt=1.89 min.
  • Compound 116-E2 (mixture of 2 stereoisomers) LC/MS ESI 530.2 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.70-7.55 (m, 1H), 7.50-7.40 (m, 1H), 7.38-7.20 (m, 2H), 7.10-7.00 (m, 1H), 6.26 (d, J=7.2 Hz, 1H), 5.05-4.82 (m, 2H), 4.10-4.00 (m, 1H), 3.98-3.85 (m, 1H), 3.80-3.65 (m, 1H), 3.60-3.43 (m, 1H), 3.42-3.35 (m, 2H), 3.30-3.25 (m, 2H), 3.18-3.08 (m, 1H), 3.05-2.85 (m, 1H), 2.59 (t, J=6.0 Hz, 2H), 2.44 (t, J=7.6 Hz, 2H), 2.35-1.40 (m, 13H). Chiral SFC F (45% EtOH): ee 100%, Rt=4.45 min.
    • 2-(5-fluoro-2-(tetrahydro-2H-pyran-4-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 117-E1 and 117-E2)
  • Figure US20200071322A1-20200305-C00488
  • Compound 117-E1: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.39-7.26 (m, 2H), 7.10 (d, J=7.3 Hz, 1H), 7.01 (m, 1H), 6.31 (d, J=7.3 Hz, 1H), 4.80 (s, 1H), 4.09 (s, 1H), 3.95-3.85 (m, 2H), 3.49-3.33 (m, 5H), 3.31-3.26 (m, 2H), 3.20-3.13 (m, 2H), 2.97-2.86 (m, 2H), 2.62 (t, J=6.2 Hz, 2H), 2.49 (m, 2H), 2.03-1.93 (m, 2H), 1.87-1.74 (m, 4H), 1.59 (m, 6H).
  • Compound 117-E2: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.49-7.39 (m, 2H), 7.22 (d, J=7.3 Hz, 1H), 7.12 (m, 1H), 6.42 (d, J=7.3 Hz, 1H), 4.84 (s, 1H), 4.17 (d, J=3.3 Hz, 1H), 4.05-3.96 (m, 2H), 3.66-3.49 (m, 3H), 3.46-3.34 (m, 5H), 3.26-3.12 (m, 3H), 2.73 (t, J=6.2 Hz, 2H), 2.61 (m, 2H), 2.21-2.10 (m, 2H), 1.96-1.85 (m, 4H), 1.78-1.59 (m, 6H).
    • 2-(5-fluoro-2-((R)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 118-E1 and 118-E2)
  • Figure US20200071322A1-20200305-C00489
  • Compound 118-E1: (ESI 526.65 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.57 (m, 1H), 7.51 (m, 1H), 7.19 (d, J=7.3 Hz, 1H), 7.13 (m, 1H), 6.39 (d, J=7.3 Hz, 1H), 4.87-4.78 (m, 2H), 4.17 (d, J=2.7 Hz, 1H), 4.07 (m, 1H), 3.74 (m, 1H), 3.55 (m, 1H), 3.45 (m, 2H), 3.40-3.35 (m, 2H), 3.24 (m, 1H), 3.13 (d, J=12.5 Hz, 1H), 3.01-2.93 (m, 1H), 2.69 (t, J=6.2 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 2.10-1.99 (m, 4H), 1.92-1.83 (m, 2H), 1.74 (m, 2H), 1.64 (m, 6H), 1.43 (m, 2H).
  • Compound 118-E2: (ESI 526.65 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.51-7.41 (m, 2H), 7.23 (d, J=7.3 Hz, 1H), 7.08 (m, 1H), 6.40 (d, J=7.3 Hz, 1H), 4.89 (s, 2H), 4.12 (m, 2H), 3.70 (t, J=10.6 Hz, 1H), 3.54-3.45 (m, 2H), 3.44-3.36 (m, 3H), 3.09 (s, 1H), 3.00-2.88 (m, 2H), 2.72 (t, J=6.2 Hz, 2H), 2.66-2.51 (m, 2H), 2.17 (m, 1H), 2.03-1.93 (m, 2H), 1.88 (m, 4H), 1.74 (t, J=10.4 Hz, 3H), 1.69-1.50 (m, 5H), 1.48-1.35 (m, 1H).
    • 2-(5-fluoro-2-(tetrahydrofuran-2-yl)phenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 119-A-E1, 119-A-E2, 119-B-E1 and 119-B-E2)
  • Figure US20200071322A1-20200305-C00490
  • Compound 119-A-E1: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.55-7.41 (m, 2H), 7.18 (d, J=7.3 Hz, 1H), 7.10 (m, 1H), 6.39 (d, J=7.3 Hz, 1H), 5.22-5.16 (m, 1H), 4.88 (s, 1H), 4.15 (m, 2H), 3.91 (m, 1H), 3.53-3.42 (m, 3H), 3.41-3.37 (m, 2H), 3.25 (d, J=8.8 Hz, 1H), 3.06 (d, J=12.2 Hz, 1H), 3.00-2.94 (m, 1H), 2.71 (t, J=6.2 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 2.42 (m, 1H), 2.16-1.98 (m, 5H), 1.91-1.85 (m, 2H), 1.70-1.59 (m, 4H), 1.44 (m, 2H).
  • Compound 119-A-E2: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.55 (m, 2H), 7.23 (d, J=7.3 Hz, 1H), 7.12 (m, 1H), 6.41 (d, J=7.3 Hz, 1H), 5.37 (t, J=7.0 Hz, 1H), 4.68 (s, 1H), 4.12 (m, 2H), 3.94 (m, 1H), 3.51-3.36 (m, 5H), 3.17 (s, 1H), 3.06-2.94 (m, 2H), 2.73 (t, J=6.2 Hz, 2H), 2.57 (m, 3H), 2.18 (m, 1H), 2.12-2.01 (m, 3H), 1.97-1.86 (m, 3H), 1.78-1.55 (m, 5H), 1.48-1.40 (m, 1H).
  • Compound 119-B-E1: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.58 (m, 1H), 7.47 (m, 1H), 7.22-7.09 (m, 2H), 6.39 (d, J=7.3 Hz, 1H), 5.25 (t, J=7.2 Hz, 1H), 4.93 (s, 1H), 4.18 (d, J=3.4 Hz, 1H), 4.11 (m, 1H), 3.94 (m, 1H), 3.56-3.42 (m, 3H), 3.41-3.36 (m, 2H), 3.27-3.11 (m, 2H), 3.07-2.97 (m, 1H), 2.71 (t, J=6.2 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 2.49 (m, 1H), 2.14-2.02 (m, 4H), 2.02-1.92 (m, 1H), 1.91-1.83 (m, 2H), 1.71-1.57 (m, 4H), 1.49-1.38 (m, 2H).
  • Compound 119-B-E2: (ESI 512.63 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.51 (m, 2H), 7.25 (d, J=7.3 Hz, 1H), 7.07 (m, 1H), 6.41 (d, J=7.3 Hz, 1H), 5.34 (t, J=7.5 Hz, 1H), 4.58 (s, 1H), 4.15 (m, 2H), 3.92 (m, 1H), 3.49 (m, 1H), 3.45-3.35 (m, 4H), 2.96 (d, J=7.2 Hz, 2H), 2.89 (m, 1H), 2.73 (t, J=6.2 Hz, 2H), 2.66-2.52 (m, 2H), 2.46 (m, 1H), 2.10 (m, 3H), 1.97 (m, 1H), 1.90 (m, 3H), 1.78-1.64 (m, 2H), 1.63-1.51 (m, 3H), 1.44 (m, 1H).
    • 2-(5-fluoro-2-(tetrahydro-2H-pyran-4-yl)phenyl)-2-((R)-3-(5-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)pentyloxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 120-E1 and 120-E2)
  • Figure US20200071322A1-20200305-C00491
  • Compound 120-E1: (ESI 526.65 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.44 (m, 2H), 7.18 (d, J=7.3 Hz, 1H), 7.10 (m, 1H), 6.40 (d, J=7.3 Hz, 1H), 4.81 (s, 1H), 4.18 (s, 1H), 4.09-4.00 (m, 2H), 3.62 (m, 2H), 3.47 (t, J=6.4 Hz, 2H), 3.44-3.35 (m, 4H), 3.11 (d, J=12.0 Hz, 1H), 2.94 (t, J=7.8 Hz, 2H), 2.71 (t, J=6.2 Hz, 2H), 2.56 (t, J=7.6 Hz, 2H), 2.12-2.00 (m, 2H), 1.96-1.86 (m, 4H), 1.80-1.60 (m, 6H), 1.44 (m, 2H).
  • Compound 120-E2: (ESI 526.65 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.51 (d, J=10.3 Hz, 1H), 7.41 (m, 1H), 7.26 (d, J=7.3 Hz, 1H), 7.09 (m, 1H), 6.42 (d, J=7.3 Hz, 1H), 4.61 (s, 1H), 4.14 (s, 1H), 4.04 (d, J=7.5 Hz, 2H), 3.65 (m, 2H), 3.52 (m, 2H), 3.45-3.37 (m, 4H), 3.19 (s, 1H), 3.02 (s, 1H), 2.92 (s, 1H), 2.73 (t, J=6.2 Hz, 2H), 2.69-2.52 (m, 2H), 2.16 (m, 1H), 2.05 (s, 1H), 1.94-1.86 (m, 4H), 1.81-1.66 (m, 4H), 1.57 (d, J=18.6 Hz, 3H), 1.44 (m, 1H).
    • (2S)-2-(4-cyano-2-(tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 121-E1 and 121-E2)
  • Figure US20200071322A1-20200305-C00492
  • Compound 121-E1 (mixture of 2 stereoisomers) (ESI 519.2 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.89 (dd, J=12.0, 8.2 Hz, 2H), 7.76-7.58 (m, 1H), 7.24 (m, 1H), 6.43 (d, J=7.3 Hz, 1H), 4.81 (m, 2H), 4.16 (m, 1H), 4.09 (m, 1H), 3.77-3.67 (m, 1H), 3.52-3.37 (m, 5H), 3.30-2.88 (m, 3H), 2.73 (m, 2H), 2.68-2.53 (m, 2H), 2.21-1.54 (m, 15H).
  • Compound 121-E2 (mixture of 2 stereoisomers) (ESI 519.2 (M+H)+), 1H NMR (500 MHz, MeOD) δ 7.84 (dd, J=8.1, 2.7 Hz, 1H), 7.81 (t, J=1.9 Hz, 1H), 7.64 (m, 1H), 7.27 (m, 1H), 6.43 (t, J=6.8 Hz, 1H), 5.02 (d, J=58.4 Hz, 1H), 4.86 (m, 1H), 4.21-4.05 (m, 2H), 3.67 (m, 1H), 3.57-3.34 (m, 5H), 3.30-2.84 (m, 3H), 2.74 (m, 2H), 2.62 (m, 2H), 2.21-1.51 (m, 15H).
    • (S)-2-(3-fluoro-2-((S)-tetrahydro-2H-pyran-2-yl)phenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (122-E1)
  • Figure US20200071322A1-20200305-C00493
  • Compound 122-E1: LC/MS ESI 512.2 (M+H)+. 1H NMR (400 MHz, DMSO) δ8.18 (s, 1H), δ7.26-7.33 (m, 2H), δ7.03-7.10 (m, 2H), δ6.58 (s, 1H), δ6.25 (d, J=6 Hz, 1H), δ4.96 (d, J=14 Hz, 1H), δ4.53 (s, 1H), δ3.95-3.99 (m, 1H), δ3.91 (d, J=10.8 Hz, 1H), δ3.44 (t, J=11.2 Hz, 1H), δ3.30 (t, J=6.4 Hz, 2H), δ3.22 (t, J=6 Hz, 2H), δ2.95 (dd, J=6, 12 Hz, 1H), δ2.69-2.80 (m, 2H), δ2.60 (t, J=6 Hz, 2H), δ2.53-2.55 (m, 1H), δ2.43 (t, J=5.6, 2H), 51.90-1.98 (m, 2H), δ1.47-1.82 (m, 12H).
    • 2-(5-fluoro-2-(5-oxaspiro[2.5]octan-6-yl)phenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 129-E1 and 129-E2)
  • Figure US20200071322A1-20200305-C00494
  • Compound 129-E1: LC/MS ESI 568 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.63-7.48 (m, 2H), 7.18-7.15 (m, 1H), 6.30 (s, 1H), 4.92-4.85 (m, 3H), 4.77 (s, 1H), 4.20-4.14 (m, 2H), 3.87 (s, 3H), 3.50-3.32 (m, 3H), 3.30-2.85 (m, 4H), 2.62-2.55 (m, 4H), 2.21-1.60 (m, 12H), 0.60-0.30 (m, 4H). Chiral SFC C (20% EtOH): ee 100%, Rt=1.35 min.
  • Compound 129-E2: LC/MS ESI 568 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.46-7.40 (m, 2H), 6.95-6.92 (m, 1H), 6.14 (s, 1H), 4.85-4.80 (m, 3H), 4.37 (s, 1H), 4.02-3.96 (m, 2H), 3.74 (s, 3H), 3.40-3.22 (m, 2H), 2.98-2.65 (m, 5H), 2.52-2.41 (m, 4H), 2.20-1.40 (m, 12H), 0.44-0.20 (m, 4H). Chiral SFC C (20% EtOH): ee 100%, Rt=2.02 min.
    • 2-(2-(5,5-dimethyl-1,4-dioxan-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Compound 125)
  • Figure US20200071322A1-20200305-C00495
  • Compound 125 (mixture of 4 stereoisomers) LC/MS ESI 542 (M+H)+. 1H NMR (400 MHz, MeOD) δ 8.42 (s, 1H), 7.76-7.69 (m, 1H), 7.60-7.45 (m, 2H), 7.29-7.19 (m, 1H), 6.62-6.57 (m, 1H), 5.18 (s, 1H), 4.90-4.81 (m, 1H), 4.28-4.24 (m, 1H), 4.18-3.98 (m, 1H), 3.81-3.38 (m, 10H), 3.32-3.16 (m, 1H), 2.82-2.61 (m, 4H), 2.31-2.20 (m, 2H), 1.98-1.55 (m, 6H), 1.49-1.35 (m, 3H)), 1.20-1.08 (m, 3H).
    • 2-(2-(5,5-difluorotetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 126-E1 and 126-E2)
  • Figure US20200071322A1-20200305-C00496
  • Compound 126-E1 (mixture of 2 stereoisomers) LC/MS ESI 578 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.60-7.49 (m, 2H), 7.10 (t, J=8.0 Hz, 1H), 6.32 (s, 1H), 5.04 (d, J=10.8 Hz, 1H), 4.59 (s, 1H), 4.12 (s, 1H), 4.02-3.79 (m, 5H), 3.52-3.35 (m, 4H), 3.30-2.75 (m, 6H), 2.68-2.52 (m, 4H), 2.35-1.55 (m, 12H). Chiral SFC A (35% IPA): ee 100%, Rt=4.39 min.
  • Compound 126-E2 (mixture of 2 stereoisomers) LC/MS ESI 578 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.62-7.49 (m, 2H), 7.12-7.06 (m, 1H), 6.36 (s, 1H), 5.12-5.04 (m, 1H), 4.50 (s, 1H), 4.13 (s, 1H), 4.02-3.78 (m, 5H), 3.57-3.35 (m, 4H), 3.27-2.83 (m, 6H), 2.79-2.52 (m, 4H), 2.38-1.52 (m, 12H). Chiral SFC A (35% IPA): ee 100%, Rt=5.12 min.
    • 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (diastereomeric compounds 127-E1, 127-E2 and 127-E3)
  • Figure US20200071322A1-20200305-C00497
  • Compound 127-E1 LC/MS ESI 540 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.64-7.61 (m, 1H), 7.49-7.47 (m, 1H), 7.19-7.15 (m, 2H), 6.41-6.39 (m, 1H), 4.92-4.90 (m, 1H), 4.72-4.70 (m, 1H), 4.19-4.17 (m, 1H), 3.52-3.32 (m, 8H), 3.16-3.14 (m, 1H), 3.02-3.01 (m, 1H), 2.73-2.70 (m, 2H), 2.59-2.56 (m, 2H), 2.11-1.50 (m, 12H), 1.20 (s, 3H), 0.90 (s, 3H). Chiral SFC H (45% IPA): ee 100%, Rt=2.35 min.
  • Compound 127-E2 LC/MS ESI 540 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.65-7.63 (m, 1H), 7.52-7.49 (m, 1H), 7.21-7.16 (m, 2H), 6.41-6.39 (m, 1H), 4.82-4.70 (m, 2H), 4.17-4.16 (m, 1H), 3.52-3.32 (m, 8H), 3.20-3.16 (m, 2H), 2.73-2.70 (m, 2H), 2.59-2.56 (m, 2H), 2.24-2.08 (m, 2H), 2.01-1.55 (m, 10H), 1.20 (s, 3H), 0.90 (s, 3H). Chiral SFC H (45% IPA): ee 100%, Rt=3.66 min.
  • Compound 127-E3 (mixture of 2 stereoisomers) LC/MS ESI 540 (M+H)+. 1H NMR (400 MHz, MeOD) δ 7.66-7.62 (m, 1H), 7.51-7.49 (m, 1H), 7.41-7.17 (m, 2H), 6.48-6.46 (m, 1H), 4.92-4.90 (m, 1H), 4.72-4.70 (m, 1H), 4.19-4.17 (m, 1H), 3.52-3.32 (m, 8H), 3.16-3.10 (m, 2H), 2.73-2.70 (m, 2H), 2.59-2.56 (m, 2H), 2.11-1.50 (m, 12H), 1.20-1.18 (m, 3H), 0.90-0.84 (m, 3H).
    • 2-(2-(5,5-dimethyltetrahydro-2H-pyran-2-yl)-5-fluorophenyl)-2-((R)-3-(4-(4-methoxy-5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy)pyrrolidin-1-yl)acetic acid (Diastereomeric Compounds 128-E1, 128-E2 and 128-E3)
  • Figure US20200071322A1-20200305-C00498
  • Compound 128-E1 (mixture of 2 stereoisomers) LC/MS ESI 570 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.65-7.58 (m, 1H), 7.53-7.46 (m, 1H), 7.15-7.11 (m, 1H), 6.32-6.30 (m, 1H), 4.83-4.64 (m, 2H), 4.20-4.12 (m, 1H), 3.88-3.85 (m, 3H), 3.58-3.35 (m, 6H), 3.32-2.91 (m, 4H), 2.75-2.54 (m, 4H), 2.20-1.55 (m, 12H), 1.12 (s, 3H), 0.87 (d, J=4.8 Hz, 3H).
  • Compound 128-E2 LC/MS ESI 570 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.47-7.44 (m, 2H), 7.12-7.08 (m, 1H), 6.30 (s, 1H), 5.18 (s, 1H), 4.65 (d, J=8.0 Hz, 1H), 4.13 (s, 1H), 3.87 (s, 3H), 3.61-3.36 (m, 7H), 3.28-2.94 (m, 3H), 2.69-2.56 (m, 4H), 2.19-1.53 (m, 12H), 1.16 (s, 3H), 0.87 (s, 3H).
  • Compound 128-E3 LC/MS ESI 570 (M+H)+, 1H NMR (400 MHz, MeOD) δ 7.51-7.40 (m, 2H), 7.09-7.05 (m, 1H), 6.35 (s, 1H), 4.79 (d, J=8.0 Hz, 1H), 4.13 (s, 1H), 3.90 (s, 3H), 3.62-3.38 (m, 5H), 3.31-3.20 (m, 2H), 3.02-2.52 (m, 8H), 2.21-1.52 (m, 12H), 1.15 (s, 3H), 0.87 (s, 3H).
    • Example 35: Fluorescence Polarization Assays of Compounds for αvβ6 Binding
  • Fluorescence Polarization (FP) assays were used to measure compound activity through binding competition with the fluorescein-labeled peptide GRGDLGRL. In the assay, 10 nM of integrin αvβ6 was incubated with the test compound in 2 mM manganese chloride, 0.1 mM calcium chloride, 20 mM HEPES buffer at pH 7.3, 150 mM sodium chloride, 0.01% Triton X-100, 2% DMSO, and 3 nM of the fluorescein-labeled peptide. The assays were run in 384-well plates. For both assay versions, the integrin protein was pre-incubated with the test compounds for 15 minutes at 22° C. before the fluorescein-labeled peptide was added. After the fluorescein-labeled peptide was added, the assay was incubated at 22° C. for 1 hour and fluorescence polarization was measured. IC50 values were determined by nonlinear regression, 4-parameter curve fitting (FIGS. 1 and 2).
    • Example 36: MDCK Permeability Assays
  • Compounds were tested for permeability in an MDCK permeability assay. This assay measures the ability of compounds to cross a layer of Madin-Darby Canine Kidney (MDCK) cells from the apical to basolateral side (A->B). This measurement is predictive of the ability of compounds to be absorbed in the gut following oral dosing, an essential characteristic of an orally administered small molecule integrin inhibitor drug.
  • The assay is run in two formats. One uses wild type MDCK cells with no inhibitor. This method works well in determining the passive permeability of compounds with low efflux by P-glyocprotein (Pgp), and was used to assess permeability of a Reference Compound having the chemical formula shown below. The MDCK value of less than 1 (i.e., less than about 0.23) was obtained for the Reference Compound using this method; an IC50 value of about 96.5 nM was obtained for the Reference Compound using the fluorescence polarization assay of Example 35.
  • Figure US20200071322A1-20200305-C00499
    • Reference Compound
  • avb6. (IC50)
    [nM] MDCK (A->B)
    96.5 <0.23
  • However, for compounds with Pgp efflux, it is necessary to include a Pgp inhibitor order to determine passive permeability for A->B transmission. In this case, a MDCK-MDR1 cell line overexpressing Pgp is used, and PGP inhibitor GF120918 is included at sufficient concentration (10 μM) to block activity of Pgp. This procedure (MDCK-MDR1 with PGP inh (A->B) [10{circumflex over ( )}6 cm/s]) was used to obtain the data presented in Tables shown in FIGS. 3 and 4. MDCK permeability values of less than 5 10{circumflex over ( )}6 cm/s predict low absorption in the gut, while permeability values greater than 5 10{circumflex over ( )}6 cm/s predict sufficient absorption in the gut for oral dosing of a small molecule drug.
  • The detailed experimental procedure is as follows:
  • EQUIPMENT REAGENTS
    24-well Cell Culture Plate (PET GF120918 (Pgp inhibitor)
    membrane): Millipore # PSHT 010 R5 Lucifer Yellow
    24-well feeder tray: Millipore #PSMW Reference compounds: Quinidine,
    010 R5 Metoprolol, Atenolol
    Millicell ERS System-Millipore Cell line: MDCK (ATCC) or
    # MERS 000 01 MDCK MDR1 (NKI)
    96-well U-shape plates Cell culture growth medium
    (BH Bio# BH-04ML-96U) (MEM + 10% FBS + 1% NEAA):
    96-well microplates (Greiner#655209) Trypsin-EDTA (Invitrogen, Cat#
    37□ CO2 Incubator 25200-072)
    Infinite F2000pro (TECAN) Assay and dosing solution buffer:
    Hanks Balanced Salt Solution
    (HB SS, Invitrogen,
    Cat# 14025-092) with 25 mM
    HEPES, pH 7.4
    Test article and reference
    compound stock solutions were
    prepared in DMSO, Lucifer Yellow
    (LY) stock solution was prepared
    in the assay buffer.
    • Cell Culture and Maintenance:
      • Cell stock cultures (MDCK or MDCK MDR1) are maintained in MEM+10% FBS+1% NEAA, grown in 75 cm2 tissue culture treated flasks and split (passed) 2 times weekly to maintain desired confluence.
      • For maintenance passage: trypsinized cells are routinely distributed into new flasks at a standard passage ratio of 1:20.
  • Seeding Assay Plates:
  • MDCK assay plates are seeded with MDCK or MDCK MCR1 cells 3-4 days prior to running the assay. 24-well plates are seeded at a cell density of 0.88×105/well in a 400 μL apical chamber volume (2.2×105/mL) with a 25 mL volume of growth medium to the 24-well basal chamber. Assay plates are generally provided with a growth medium change 24 hours prior to the assay.
    • Preparation of the Assay Plates and Trans-Epithelial Electrical Resistance (TEER) Measurement:
  • MDCK assay plates are rinsed with HBSS+prior to running the assay. After rinsing, fresh HBSS+ is added to the assay plate in a 400 μL apical chamber volume and a 0.8 mL HBSS+ basal chamber volume. Measure the electrical resistance across the monolayer using the Millicell ERS system ohm meter. (The cells will be used if TEER is higher than 100 ohm*cm2).
    • Preparation of Dosing Solution.
  • Donor solutions are prepared in HBSS+ with 0.4% DMSO and 5 μM test compound. The donor solution contains 5 μM lucifer yellow for apical dosing, but no lucifer yellow for basolateral dosing. The donor solution may also contain 10 μM GF120918 for Pgp inhibition. Receiver solutions are prepared with HBSS+ with 0.4% DMSO. Donor and receiver solutions were centrifuged at 4000 rpm, 5 min, and supernatants were used for compound dosing.
    • Preparation of the Cell Plates:
      • Remove the buffer from the apical side and basolateral side. Add 600 μL of donor solution (for A-to-B) or 500 μL of receiver solution (for B-to-A) to the apical wells based on plate map.
      • A fresh basolateral plate is prepared by adding 800 μL of receiver solution (for A-to-B) or 900 μL of donor solution (B-to-A) to the well of a new 24-well plate.
      • Put the apical plate and basolateral plate into a 37 □ CO2 incubator.
    Preparation of Analytical Plate:
      • After 5 min, transfer 100 μL of samples from all donors (for both A-to-B and B-to-A) into appropriate wells of a sample plate for DO. And transfer 100 μL of samples from all apical chambers (the donor of A-to-B and receiver of B-to-A) into appropriate wells of a microplate for Lucifer Yellow D0 (D0 LY)
      • Lay the apical plate to the basolateral plate to start transport process.
      • At 90 min, separate the apical and basolateral plates and transfer 100 μL of samples from all donors (for both A-to-B and B-to-A) into appropriate wells of a new sample plate for D90, and transfer 200 μL of samples from all receivers into appropriate wells of a sample plate for R90. Transfer 100 μL of samples from all basolateral chambers (receiver of A-to-B and donor of B-to-A) into appropriate wells of a new microplate for Lucifer Yellow R90 (R90 LY).
      • Determine LY permeability by reading D0 LY and R90 LY at an excitation wavelength of 485 nm and an emission wavelength of 535 nm using a fluorescent plate reader.
      • LC/MS/MS Sample preparation:
        • For receiver solution: 60 μL of sample+60 μL ACN with IS (200 ng/mL Osalmid)
        • For donor solution: 6 μL of sample+54 μL 0.4% DMSO/HBSS+60 μL ACN with IS (200 ng/mL Osalmid)
        • The compound standard curve 20× solutions (0.1-60 μM range) are prepared in MeOH:H2O (1:1). 1× concentrated solutions (0.005-3 μM range) are prepared by mixing 3 μL of 20× solution with 57 μL 0.4% DMSO HBSS and 60 μL ACN with IS (200 ng/mL Osalmid).
    Calculations

  • Transepithelial electrical resistance (TEER)=(Resistancesample−Resistanceblank)×Effective Membrane Area
  • Lucifer Yellow permeability:

  • P app=(V A/(Area×time))×([RFU]accepter−[RFU]blank)/(([RFU]initial,donor−[RFU]blank)×Dilution Factor)×100
  • Plate drug transport assays using the following equation:

  • Transepithelial electrical resistance (TEER)=(Resistancesample−Resistanceblank)×Effective Membrane Area
  • Drug permeability:

  • P app=(V R/(Area×time))×([drug]receiver/(([drug]initial,donor)×Dilution Factor)
  • Where VR is the volume in the receiver well (0.8 mL for A-to-B and 0.4 mL for B-to-A), area is the surface area of the membrane (0.7 cm2 for Millipore-24 Cell Culture Plates), and time is the total transport time in seconds.

  • Percentage Recovery=100×(Total compound in donor at 90 min×Dilution Factor+Total compound in receiver at 90 min)/(Total compound in donor at 0 min×Dilution Factor)
    • INCORPORATION BY REFERENCE
  • All of the U.S. patents and U.S. patent application publications cited herein are hereby incorporated by reference.
    • EQUIVALENTS
  • Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are encompassed by the following claims.

Claims (30)

1. A compound of formula (I):

A-B-C  (I)
wherein:
A is
Figure US20200071322A1-20200305-C00500
 wherein all instances of R1 are H;
B is selected from the group consisting of:
Figure US20200071322A1-20200305-C00501
q is 0, 1, 2, or 3; and p is 0, 1, or 2;
C is
Figure US20200071322A1-20200305-C00502
 wherein n is 0; and
R2 is
Figure US20200071322A1-20200305-C00503
 and n in R2 is 0 or 1;
R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl, —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
R5 is F;
Ra is H; and
the absolute configuration at any stereocenter is R, S, or a mixture thereof,
or a pharmaceutically acceptable salt thereof.
2. The compound of claim 1, wherein B is
Figure US20200071322A1-20200305-C00504
3. The compound of claim 2, wherein q is 2.
4. The compound of claim 3, wherein A is
Figure US20200071322A1-20200305-C00505
5. The compound of claim 4, wherein R4 is cycloalkyl.
6. The compound of claim 4, wherein R4 is heterocycloalkyl.
7. The compound of claim 4, wherein R4 is —O-alkylene-cycloalkyl.
8. The compound of claim 4, wherein R4 is selected from
Figure US20200071322A1-20200305-C00506
Figure US20200071322A1-20200305-C00507
9. The compound of claim 4, wherein R4 is selected from
Figure US20200071322A1-20200305-C00508
Figure US20200071322A1-20200305-C00509
10. The compound of claim 4, wherein R2 is
Figure US20200071322A1-20200305-C00510
wherein n in R2 is 1.
11. The compound of claim 10, wherein R4 is
Figure US20200071322A1-20200305-C00511
12. The compound of claim 10, wherein R4 is
Figure US20200071322A1-20200305-C00512
13. The compound of claim 10, wherein R4 is
Figure US20200071322A1-20200305-C00513
14. The compound of claim 10, wherein R4 is
Figure US20200071322A1-20200305-C00514
15. The compound of claim 1, having the formula:
Figure US20200071322A1-20200305-C00515
or a pharmaceutically acceptable salt thereof.
16. The compound of claim 1, having the formula:
Figure US20200071322A1-20200305-C00516
or a pharmaceutically acceptable salt thereof.
17. The compound of claim 1, having the formula:
Figure US20200071322A1-20200305-C00517
or a pharmaceutically acceptable salt thereof.
18. The compound of claim 1, having the formula:
Figure US20200071322A1-20200305-C00518
or a pharmaceutically acceptable salt thereof.
19. The compound of claim 1, having the formula:
Figure US20200071322A1-20200305-C00519
or a pharmaceutically acceptable salt thereof.
20. A pharmaceutical composition formulated for oral delivery of an αvβ6 integrin inhibitor, the composition comprising the αvβ6 integrin inhibitor compound of claim 1 or a pharmaceutically acceptable salt thereof as the active compound and a pharmaceutically acceptable carrier formulated for oral therapeutic administration of the αvβ6 integrin inhibitor compound.
21. A compound of formula (I):

A-B-C  (I)
wherein:
A is
Figure US20200071322A1-20200305-C00520
 wherein all instances of R1 are H;
B is selected from the group consisting of:
Figure US20200071322A1-20200305-C00521
q is 0, 1, 2, or 3; and p is 0, 1, or 2;
C is
Figure US20200071322A1-20200305-C00522
 wherein n is 0; and
R2 is
Figure US20200071322A1-20200305-C00523
 and n in R2 is 0;
R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl, —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
Ra is H; and
the absolute configuration at any stereocenter is R, S, or a mixture thereof,
or a pharmaceutically acceptable salt thereof.
22. The compound of claim 21, wherein:
A is
Figure US20200071322A1-20200305-C00524
B is
Figure US20200071322A1-20200305-C00525
q is 2;
C is
Figure US20200071322A1-20200305-C00526
wherein n is 0; and
R4 is heterocycloalkyl;
Ra is H; and
the absolute configuration at any stereocenter is R, S, or a mixture thereof;
or a pharmaceutically acceptable salt thereof.
23. The compound of claim 22, having the formula:
Figure US20200071322A1-20200305-C00527
or a pharmaceutically acceptable salt thereof.
24. A pharmaceutical composition formulated for oral delivery of an αvβ6 integrin inhibitor, the composition comprising the αvβ6 integrin inhibitor compound of claim 21 as an active compound and a pharmaceutically acceptable carrier formulated for oral therapeutic administration of the αvβ6 integrin inhibitor compound.
25. A compound of formula (I):

A-B-C  (I)
wherein:
A is
Figure US20200071322A1-20200305-C00528
 wherein all instances of R1 are H;
B is selected from the group consisting of:
Figure US20200071322A1-20200305-C00529
q is 0, 1, 2, or 3; and p is 0, 1, or 2;
C is
Figure US20200071322A1-20200305-C00530
 wherein n is 0; and
R2 is
Figure US20200071322A1-20200305-C00531
 and m in R2 is 0 or 1;
R4 is independently selected from alkyl, —C(F2)CH3, cycloalkyl, heterocycloalkyl, -alkylene-cycloalkyl, —O-alkylene-cycloalkyl, —O-cycloalkyl, —O-alkyl, -alkylene-O-alkyl, -alkylene-O-cycloalkyl, and -alkylene-O-alkylene-cycloalkyl;
R5 is F;
Ra is H; and
the absolute configuration at any stereocenter is R, S, or a mixture thereof,
or a pharmaceutically acceptable salt thereof.
26. The compound of claim 25, wherein:
B is
Figure US20200071322A1-20200305-C00532
q is 2;
C is
Figure US20200071322A1-20200305-C00533
wherein n is 0, and
R4 is cycloalkyl;
Ra is H; and
the absolute configuration at any stereocenter is R, S, or a mixture thereof;
or a pharmaceutically acceptable salt thereof.
27. The compound of claim 25, having the formula:
Figure US20200071322A1-20200305-C00534
or a pharmaceutically acceptable salt thereof.
28. The compound of claim 25, having the formula:
Figure US20200071322A1-20200305-C00535
or a pharmaceutically acceptable salt thereof.
29. A pharmaceutical composition formulated for oral delivery of an αvβ6 integrin inhibitor, the composition comprising the αvβ6 integrin inhibitor compound of claim 25 as an active compound and a pharmaceutically acceptable carrier formulated for oral therapeutic administration of the αvβ6 integrin inhibitor compound.
30. The compound of claim 1, wherein the compound is selected from the group consisting of:
Figure US20200071322A1-20200305-C00536
Figure US20200071322A1-20200305-C00537
Figure US20200071322A1-20200305-C00538
Figure US20200071322A1-20200305-C00539
Figure US20200071322A1-20200305-C00540
Figure US20200071322A1-20200305-C00541
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