US20140274999A1 - Cephalosporin compositions and methods of manufacture - Google Patents

Cephalosporin compositions and methods of manufacture Download PDF

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US20140274999A1
US20140274999A1 US14/211,465 US201414211465A US2014274999A1 US 20140274999 A1 US20140274999 A1 US 20140274999A1 US 201414211465 A US201414211465 A US 201414211465A US 2014274999 A1 US2014274999 A1 US 2014274999A1
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compound
formula
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Jan-Ji Lai
Pradip M. Pathare
Laxma Kolla
Adrien F. Soret
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Cubist Pharmaceuticals LLC
Merck Sharp and Dohme LLC
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Calixa Therapeutics Inc
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    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/59Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3 with hetero atoms directly attached in position 3
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/425Thiazoles
    • A61K31/4261,3-Thiazoles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/433Thidiazoles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/54Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame
    • A61K31/542Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/545Compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins, cefaclor, or cephalexine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/54Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame
    • A61K31/542Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/545Compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins, cefaclor, or cephalexine
    • A61K31/546Compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins, cefaclor, or cephalexine containing further heterocyclic rings, e.g. cephalothin
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/66Phosphorus compounds
    • A61K31/675Phosphorus compounds having nitrogen as a ring hetero atom, e.g. pyridoxal phosphate
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/02Preparation
    • C07D501/04Preparation from compounds already containing the ring or condensed ring systems, e.g. by dehydrogenation of the ring, by introduction, elimination or modification of substituents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/02Preparation
    • C07D501/04Preparation from compounds already containing the ring or condensed ring systems, e.g. by dehydrogenation of the ring, by introduction, elimination or modification of substituents
    • C07D501/06Acylation of 7-aminocephalosporanic acid
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/207-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids
    • C07D501/227-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids with radicals containing only hydrogen and carbon atoms, attached in position 3
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    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/207-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids
    • C07D501/247-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids with hydrocarbon radicals, substituted by hetero atoms or hetero rings, attached in position 3
    • C07D501/26Methylene radicals, substituted by oxygen atoms; Lactones thereof with the 2-carboxyl group
    • C07D501/34Methylene radicals, substituted by oxygen atoms; Lactones thereof with the 2-carboxyl group with the 7-amino radical acylated by carboxylic acids containing hetero rings
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/207-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids
    • C07D501/247-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids with hydrocarbon radicals, substituted by hetero atoms or hetero rings, attached in position 3
    • C07D501/36Methylene radicals, substituted by sulfur atoms
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    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/207-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids
    • C07D501/247-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids with hydrocarbon radicals, substituted by hetero atoms or hetero rings, attached in position 3
    • C07D501/48Methylene radicals, substituted by hetero rings
    • C07D501/56Methylene radicals, substituted by hetero rings with the 7-amino radical acylated by carboxylic acids containing hetero rings
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    • C07D501/00Heterocyclic compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins; Such ring systems being further condensed, e.g. 2,3-condensed with an oxygen-, nitrogen- or sulfur-containing hetero ring
    • C07D501/14Compounds having a nitrogen atom directly attached in position 7
    • C07D501/16Compounds having a nitrogen atom directly attached in position 7 with a double bond between positions 2 and 3
    • C07D501/207-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids
    • C07D501/577-Acylaminocephalosporanic or substituted 7-acylaminocephalosporanic acids in which the acyl radicals are derived from carboxylic acids with a further substituent in position 7, e.g. cephamycines
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    • C07ORGANIC CHEMISTRY
    • C07FACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F9/00Compounds containing elements of Groups 5 or 15 of the Periodic System
    • C07F9/02Phosphorus compounds
    • C07F9/547Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
    • C07F9/6561Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings
    • C07F9/65613Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings containing the ring system (X = CH2, O, S, NH) optionally with an additional double bond and/or substituents, e.g. cephalosporins and analogs

Definitions

  • the present disclosure relates to cephalosporin compositions and the manufacture thereof.
  • Cephalosporin compounds containing the chemical substructure of formula (I) are important antibacterial therapeutic agents.
  • the manufacture of these cephalosporin compounds is typically performed in a series of synthetic chemical reactions. Reducing the number of synthetic chemical reactions and associated purification steps can increase product yield and decrease the time for production, thereby increasing efficiency and decreasing production costs.
  • Syntheses of antibiotic cephalosporin compounds containing the substructure of formula (I) typically require two reactions for the formation of a 7-carboxamide moiety: (1) deprotection (i.e., removal of a protecting group) of the 7-amino group, and (2) acylation of the 7-amino group to form the 7-carboxamide moiety.
  • deprotection i.e., removal of a protecting group
  • acylation of the 7-amino group to form the 7-carboxamide moiety.
  • Ceftolozane CXA-101, FR264205
  • Ceftolozane is a cephalosporin antibiotic compound, a synthesis of which is disclosed in U.S. Pat. No. 7,129,232.
  • cephalosporin antibiotic compounds include the compounds of Table 2. There remains an unmet need to identify novel manufacturing processes for synthesizing cephalosporin compounds comprising the chemical substructure of formula (I), including methods for formation of a 7-carboxamide moiety from a protected 7-amino group with fewer chemical synthetic steps.
  • a novel chemical process useful in the manufacture of cephalosporin compounds containing the chemical substructure of Formula (I) can include deprotection (i.e., removal of a nitrogen protecting group) and acylation of the 7-amino group in a single step rather than multiple steps.
  • the invention is based in part on the surprising discovery that salicyladehyde imine derivatives according to formula (Ia) can be reacted with activated carboxylic acid derivatives (Ib) to yield 7-carboxamide compounds according to formula (I) in a single step. This outcome is surprising because the imine derivatives of formula (Ia) are stable to the reaction conditions in the absence of the activated carboxylic acid derivative.
  • a method for transforming a protected 7-amino group into a 7-carboxamide moiety comprising a single step.
  • FIG. 1 depicts a representative 7-carboxamide moiety and 7-amino group.
  • FIG. 2 depicts a prior art procedure (U.S. Pat. No. 5,134,138) comprising the deprotection of a protected 7-amino group followed by conversion of the 7-amino group into a 7-carboxamide moiety.
  • FIG. 3 depicts the full scan mass spectrum of compound (IV-1).
  • FIG. 4 depicts the product ion mass spectrum of compound (IV-1).
  • FIG. 5 depicts the full scan mass spectrum of compound (III-1).
  • FIG. 6 depicts the product ion mass spectrum of compound (III-1).
  • FIG. 7 depicts the full scan mass spectrum of compound (II-1).
  • FIG. 8 depicts the product ion mass spectrum of compound (II-1).
  • FIG. 9 depicts the full scan mass spectrum of ceftolozane trifluoroacetate.
  • FIG. 10 depicts the product ion mass spectrum of ceftolozane trifluoroacetate.
  • FIG. 11 depicts the HPLC chromatograms of Example 2.
  • a method for preparing a compound of formula (II), or a salt thereof comprising the step of reacting a compound of formula (III), or a salt thereof, with a compound of formula (IV), or a salt thereof, under suitable conditions to form a compound of formula (II), or a salt thereof, wherein the compounds of formulas (II), (III) and (IV) are defined according to the variable values below.
  • R 1 is R 1′ —Z; wherein R 1′ is selected from the group consisting of a bond, aryl, cycloalkyl, cycloalkenyl, heterocyclyl, and heteroaryl; wherein Z is 0-2 instances of a substituent that for each occurrence is independently selected from the group consisting of hydrogen, halogen, hydroxyl, hydroxyalkyl, aminoalkyl, alkyl, alkylidenyl, alkyenyl, heteroalkyl, cyano and amino, wherein Z is optionally, independently substituted one or more times with amino, halogen, carboxyl, oxo, a nitrogen protecting group, an oxygen protecting group or —P(O)(OZ′) 2 ; and wherein Z′ is independently hydrogen or an oxygen protecting group.
  • R 1 is selected from the group consisting of aryl and heteroaryl moieties.
  • R 1 is a substituted or unsubstituted aryl or heteroaryl moiety selected from the group consisting of: thiophene, furan, thiazole, tetrazole, thiadiazole, pyridyl, phenyl, phenol, cyclohexadiene and dithietane.
  • R 1 is selected from the group consisting of the following moieties:
  • R 1 is
  • R 2 is selected from the group consisting of hydrogen and alkoxy. In another embodiment of the method, R 2 is hydrogen, and the compound of formula (II) has the structure of formula (IIb).
  • Y is selected from the group consisting of a bond, CH 2 , CH 2 S, SCH 2 , C ⁇ C(H)CH 2 CO 2 R′, CH(OR′), C ⁇ N(OR′), CHNR′′ 2 and C ⁇ NR′′; wherein R′ is selected from the group consisting of hydrogen, an oxygen protecting group and alkyl, wherein the alkyl is optionally substituted one or more times with halogen, hydroxyl or —CO 2 R 5 ; wherein R′′ is a substituent that for each occurrence is selected from hydrogen, alkyl, C(O)heterocyclyl, and a nitrogen protecting group, wherein any two R′′ substituents may combine to form a ring or a single nitrogen protecting group; and wherein R 5 is independently hydrogen or an oxygen protecting group.
  • Y is selected from a bond, CH 2 , CH 2 S and C ⁇ C(H)CH 2 CO 2 R′, and R′ is selected from the group consisting of hydrogen and an oxygen protecting group.
  • Y is C ⁇ N(OR′) and R′ is selected from the group consisting of an oxygen protecting group, hydrogen, methyl, ethyl, CH 2 CO 2 R 5 and C(CH 3 ) 2 CO 2 R 5 .
  • Y is CH(OR′) and R′ is hydrogen or an oxygen protecting group.
  • Y is CHNR′′ 2 and R′′ is 1-2 instances of a substituent that for each occurrence is selected from hydrogen, a nitrogen protecting group and
  • Y is C ⁇ N(OR′) and R′ is C(CH 3 ) 2 CO 2 t Bu, and the compound of formula (II) has the structure of formula (IIc).
  • R 3 is selected from the group consisting of hydrogen and an oxygen protecting group.
  • R 3 is an oxygen protecting group selected from benzyl ethers. Benzyl ethers may be substituted (e.g., with one or more alkoxy substituents) or unsubstituted.
  • R 3 is
  • R 4 and R 4′ are independently selected from the group consisting of halogen, —R 6 -R 7 , —CH 2 —R 6 -R 7 and —CH ⁇ R 7 ; wherein R 6 is selected from the group consisting of a bond, oxygen, sulfur, alkyl, alkenyl, aryl, heteroaryl and heterocyclyl; wherein R 7 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkanoyl, aroyl, heteroaroyl, carboxamide, aryl, heteroaryl and heterocyclyl; and wherein R 7 is optionally, independently substituted 1-3 times with a substituent selected from alkyl, alkyl sulfite, heterocyclyl and NR a R b ; wherein R a and R b are independently selected from the group consisting of hydrogen, alkyl, a nitrogen protecting group and C(O)NHR c ; wherein R c is an alkyl group or a heteroal
  • R 4 and R 4′ are independently selected from the group consisting of hydrogen, chlorine, methyl, CH ⁇ CH—CH 3 , CH ⁇ CH 2 , CH 2 OC(O)CH 3 , CH 2 OC(O)NH 2 , CH 2 OCH 3 ,
  • a ⁇ for each occurrence, is independently a pharmaceutically acceptable anion.
  • a ⁇ is selected from chloride, acetate, trifluoroacetate and bisulfate. In a particular embodiment, A ⁇ is trifluoroacetate.
  • R 4 is
  • R 4′ is
  • X is selected from the group consisting of halogen, —OC(O)R 8 and —OSO 2 R 8 ; wherein R 8 is selected from the group consisting of alkyl, heteroalkyl, aryl and heteroaryl.
  • R 8 is selected from the group consisting of alkyl, heteroalkyl, aryl and heteroaryl.
  • X is —OSO 2 R 8 .
  • X is —OSO 2 CH 3 .
  • the suitable conditions comprise reacting in a mixture comprising an organic solvent and water.
  • Organic solvents can be selected from the group consisting of aromatic solvents, aliphatic solvents, halogenated solvents, halogenated aromatic solvents, halogenated aliphatic solvents, ethers, halogenated ethers, esters and amides.
  • the organic solvent is selected from halogenated solvents.
  • the organic solvent is dichloromethane.
  • the suitable conditions comprise reacting in a mixture comprising an organic solvent and about 6-9 percent (w/w) water relative to the compound of formula (III), or salt thereof.
  • the suitable conditions comprise reaction in a mixture comprising an organic solvent and about 6-8 percent (w/w) water relative to the compound of formula (III), or salt thereof.
  • the suitable conditions comprise reacting in a mixture comprising dichloromethane and about 6-9 percent of water relative to the compound of formula (III), or salt thereof.
  • the compound of formula (III) is hydrolytically stable under the reaction conditions, in the absence of the compound of formula (IV).
  • compound (III-1) was combined with dichloromethane and water in the same relative amounts as in Example 1. Upon stirring for four hours, no hydrolysis of (III-1) was observed. In contrast, under the same solvent, temperature and time conditions, but in the presence of compound (IV-1), compound (III-1) reacts to form compound (II-1).
  • the method further comprises the step of reacting the compound of formula (II), or a salt thereof, under suitable conditions to form a compound of formula (V), or a salt thereof, wherein the compound of formula (V) is selected from the compounds of Table 2, or salts thereof.
  • the suitable conditions comprise reacting the compound of formula (II) with strong acid.
  • the strong acid is trifluoroacetic acid.
  • composition comprising the compound of formula (V), or salt a thereof, and one or more compound selected from the group consisting of: the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof.
  • the composition comprises the compound of formula (V), or salt a thereof, the compound of formula (I) or salt a thereof, the compound of formula (Ia) or salt a thereof, and the compound of formula (Ib) or salt a thereof.
  • the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof are present, if at all, in an amount that is less than or equal to 0.05% w/w.
  • the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof are present, if at all, in an amount that is less than or equal to 0.05 mol %.
  • a method of treating a bacterial infection in a patient comprising the step of administering a composition as described above.
  • Oxygen and nitrogen protecting groups are known to those of skill in the art.
  • Oxygen protecting groups include, but are not limited to methyl ethers, substituted methyl ethers (e.g., MOM (methoxymethyl ether), MTM (methylthiomethyl ether), BOM (benzyloxymethyl ether), PMBM or MPM (p-methoxybenzyloxymethyl ether), to name a few), substituted ethyl ethers, substituted benzyl ethers, silyl ethers (e.g., TMS (trimethylsilyl ether), TES (triethylsilylether), TIPS (triisopropylsilyl ether), TBDMS (t-butyldimethylsilyl ether), tribenzyl silyl ether, TBDPS (t-butyldiphenyl silyl ether), to name a few), esters (e.g., formate, acetate, benzoate (Bz), tri
  • Nitrogen protecting groups include, but are not limited to, carbamates (including methyl, ethyl and substituted ethyl carbamates (e.g., Troc), to name a few) amides, cyclic imide derivatives, N-alkyl and N-aryl amines, benzyl amines, substituted benzyl amines, trityl amines, imine derivatives, and enamine derivatives, for example.
  • carbamates including methyl, ethyl and substituted ethyl carbamates (e.g., Troc), to name a few) amides, cyclic imide derivatives, N-alkyl and N-aryl amines, benzyl amines, substituted benzyl amines, trityl amines, imine derivatives, and enamine derivatives, for example.
  • alkyl groups and groups comprising an alkyl group comprise 1-6 carbon atoms.
  • aryl groups and groups comprising aryl groups e.g., aroyl
  • heteroaryl groups and groups comprising heteroaryl groups comprise 1-10 carbon atoms and 1-4 heteroatoms selected from oxygen, nitrogen and sulfur.
  • HRMS high resolution mass spectrometry
  • HR MS/MS high resolution mass spectrometry/mass spectrometry
  • Samples were dissolved in solution and the sample solutions were directly infused into time-of-flight (TOF) mass spectrometer to obtain parent (MS) and product scans (MS/MS) of analyte.
  • TOF time-of-flight
  • MS parent
  • MS/MS product scans
  • Compound (III-1) was prepared by coupling the compound (6R,7R)-4-methoxybenzyl 3-(chloromethyl)-7-((Z)-(2-hydroxybenzylidene)amino)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (purchased from Nippon Chemicals, Japan) with the compound tert-butyl (2-(3-(1-methyl-5-(tritylamino)-1H-pyrazol-4-yl)ureido)ethyl)carbamate (prepared according to the method disclosed in U.S. Pat. No. 7,129,232).
  • HRMS 977.4025 (M+).
  • a reactor is charged with 4-(2-(((7R)-7-((Z)-(2-hydroxybenzylidene)amino)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)thio)thiazol-4-yl)-1-methylpyridin-1-ium trifluoroacetate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-(phosphonoamino)-1,2,4-thiadiazol-3-yl)-2-(ethoxyimino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base).
  • the mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid.
  • the solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether.
  • the solid is dried under vacuum to yield the title compound.
  • a reactor is charged with (7R)-4-methoxybenzyl-3-((E)-((R)-1′-(tert-butoxycarbonyl)-2-oxo-[1,3′-bipyrrolidin]-3-ylidene)methyl)-7-((Z)-(2-hydroxybenzylidene)amino)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((4-methoxybenzyl)oxy)imino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base).
  • the mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid.
  • the solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether.
  • the solid is dried under vacuum to yield the title compound.
  • a reactor is charged with 1-(((7R)-7-((Z)-(2-hydroxybenzylidene)amino)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methyl)pyridin-1-ium trifluoroacetate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base).
  • the mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid.
  • the solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether.
  • the solid is dried under vacuum to yield the title compound.
  • a reactor is charged with (7R)-4-methoxybenzyl 7-((Z)-(2-hydroxybenzylidene)amino)-3-methyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), (R)-2-((tert-butoxycarbonyl)amino)-2-phenylacetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base).
  • the mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid.
  • the solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether.
  • the solid is dried under vacuum to yield the title compound.
  • a reactor is charged with (75)-4-methoxybenzyl 3-((carbamoyloxy)methyl)-7-((Z)-(2-hydroxybenzylidene)amino)-7-methoxy-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), 2-(thiophen-2-yl)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base).
  • the mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid.
  • the solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether.
  • the solid is dried under vacuum to yield the title compound.

Abstract

Provided herein is a method for the synthesis of cephalosporin antibiotic compounds comprising the conversion of a protected 7-amino group into a 7-carboxamide moiety in a single step.

Description

    RELATED APPLICATIONS
  • This application claims priority to U.S. Provisional Application No. 61/782,365, filed Mar. 14, 2013. The entire content of this application is incorporated herein by reference in its entirety.
  • TECHNICAL FIELD
  • The present disclosure relates to cephalosporin compositions and the manufacture thereof.
  • BACKGROUND
  • Cephalosporin compounds containing the chemical substructure of formula (I) are important antibacterial therapeutic agents. The manufacture of these cephalosporin compounds is typically performed in a series of synthetic chemical reactions. Reducing the number of synthetic chemical reactions and associated purification steps can increase product yield and decrease the time for production, thereby increasing efficiency and decreasing production costs.
  • Figure US20140274999A1-20140918-C00001
  • Syntheses of antibiotic cephalosporin compounds containing the substructure of formula (I) typically require two reactions for the formation of a 7-carboxamide moiety: (1) deprotection (i.e., removal of a protecting group) of the 7-amino group, and (2) acylation of the 7-amino group to form the 7-carboxamide moiety. One example of this two-step procedure is disclosed in U.S. Pat. No. 5,134,138 (see FIG. 2). Most cephalosporin antibiotics can be manufactured in an analogous way. Ceftolozane (CXA-101, FR264205) is a cephalosporin antibiotic compound, a synthesis of which is disclosed in U.S. Pat. No. 7,129,232. Additional cephalosporin antibiotic compounds include the compounds of Table 2. There remains an unmet need to identify novel manufacturing processes for synthesizing cephalosporin compounds comprising the chemical substructure of formula (I), including methods for formation of a 7-carboxamide moiety from a protected 7-amino group with fewer chemical synthetic steps.
  • SUMMARY
  • A novel chemical process useful in the manufacture of cephalosporin compounds containing the chemical substructure of Formula (I) can include deprotection (i.e., removal of a nitrogen protecting group) and acylation of the 7-amino group in a single step rather than multiple steps. The invention is based in part on the surprising discovery that salicyladehyde imine derivatives according to formula (Ia) can be reacted with activated carboxylic acid derivatives (Ib) to yield 7-carboxamide compounds according to formula (I) in a single step. This outcome is surprising because the imine derivatives of formula (Ia) are stable to the reaction conditions in the absence of the activated carboxylic acid derivative.
  • Figure US20140274999A1-20140918-C00002
  • Accordingly, provided herein is a method for transforming a protected 7-amino group into a 7-carboxamide moiety comprising a single step.
  • BRIEF DESCRIPTION OF THE DRAWINGS
  • FIG. 1 depicts a representative 7-carboxamide moiety and 7-amino group.
  • FIG. 2 depicts a prior art procedure (U.S. Pat. No. 5,134,138) comprising the deprotection of a protected 7-amino group followed by conversion of the 7-amino group into a 7-carboxamide moiety.
  • FIG. 3 depicts the full scan mass spectrum of compound (IV-1).
  • FIG. 4 depicts the product ion mass spectrum of compound (IV-1).
  • FIG. 5 depicts the full scan mass spectrum of compound (III-1).
  • FIG. 6 depicts the product ion mass spectrum of compound (III-1).
  • FIG. 7 depicts the full scan mass spectrum of compound (II-1).
  • FIG. 8 depicts the product ion mass spectrum of compound (II-1).
  • FIG. 9 depicts the full scan mass spectrum of ceftolozane trifluoroacetate.
  • FIG. 10 depicts the product ion mass spectrum of ceftolozane trifluoroacetate.
  • FIG. 11 depicts the HPLC chromatograms of Example 2.
  • DETAILED DESCRIPTION
  • Provided herein is a method for preparing a compound of formula (II), or a salt thereof, comprising the step of reacting a compound of formula (III), or a salt thereof, with a compound of formula (IV), or a salt thereof, under suitable conditions to form a compound of formula (II), or a salt thereof, wherein the compounds of formulas (II), (III) and (IV) are defined according to the variable values below.
  • Figure US20140274999A1-20140918-C00003
  • Variable R1
  • In certain embodiments, R1 is R1′—Z; wherein R1′ is selected from the group consisting of a bond, aryl, cycloalkyl, cycloalkenyl, heterocyclyl, and heteroaryl; wherein Z is 0-2 instances of a substituent that for each occurrence is independently selected from the group consisting of hydrogen, halogen, hydroxyl, hydroxyalkyl, aminoalkyl, alkyl, alkylidenyl, alkyenyl, heteroalkyl, cyano and amino, wherein Z is optionally, independently substituted one or more times with amino, halogen, carboxyl, oxo, a nitrogen protecting group, an oxygen protecting group or —P(O)(OZ′)2; and wherein Z′ is independently hydrogen or an oxygen protecting group.
  • In one embodiment, R1 is selected from the group consisting of aryl and heteroaryl moieties. In certain embodiments, R1 is a substituted or unsubstituted aryl or heteroaryl moiety selected from the group consisting of: thiophene, furan, thiazole, tetrazole, thiadiazole, pyridyl, phenyl, phenol, cyclohexadiene and dithietane. In a particular embodiment, R1 is selected from the group consisting of the following moieties:
  • Figure US20140274999A1-20140918-C00004
  • and salts thereof, wherein Z′ is defined above. In another particular embodiment, R1 is
  • Figure US20140274999A1-20140918-C00005
  • and the compound of formula (II) has the structure of formula (Ila).
  • Figure US20140274999A1-20140918-C00006
  • Variable R2
  • In certain embodiments, R2 is selected from the group consisting of hydrogen and alkoxy. In another embodiment of the method, R2 is hydrogen, and the compound of formula (II) has the structure of formula (IIb).
  • Figure US20140274999A1-20140918-C00007
  • Variable Y
  • In certain embodiments, Y is selected from the group consisting of a bond, CH2, CH2S, SCH2, C≡C(H)CH2CO2R′, CH(OR′), C≡N(OR′), CHNR″2 and C≡NR″; wherein R′ is selected from the group consisting of hydrogen, an oxygen protecting group and alkyl, wherein the alkyl is optionally substituted one or more times with halogen, hydroxyl or —CO2R5; wherein R″ is a substituent that for each occurrence is selected from hydrogen, alkyl, C(O)heterocyclyl, and a nitrogen protecting group, wherein any two R″ substituents may combine to form a ring or a single nitrogen protecting group; and wherein R5 is independently hydrogen or an oxygen protecting group.
  • In one embodiment of the method, Y is selected from a bond, CH2, CH2S and C≡C(H)CH2CO2R′, and R′ is selected from the group consisting of hydrogen and an oxygen protecting group. In another embodiment, Y is C≡N(OR′) and R′ is selected from the group consisting of an oxygen protecting group, hydrogen, methyl, ethyl, CH2CO2R5 and C(CH3)2CO2R5. In yet another embodiment, Y is CH(OR′) and R′ is hydrogen or an oxygen protecting group. In still another embodiment, Y is CHNR″2 and R″ is 1-2 instances of a substituent that for each occurrence is selected from hydrogen, a nitrogen protecting group and
  • Figure US20140274999A1-20140918-C00008
  • In a particular embodiment, Y is C≡N(OR′) and R′ is C(CH3)2CO2 tBu, and the compound of formula (II) has the structure of formula (IIc).
  • Figure US20140274999A1-20140918-C00009
  • Variable R3
  • In certain embodiments, R3 is selected from the group consisting of hydrogen and an oxygen protecting group. In another embodiment of the method, R3 is an oxygen protecting group selected from benzyl ethers. Benzyl ethers may be substituted (e.g., with one or more alkoxy substituents) or unsubstituted. In a particular embodiment, R3 is
  • Figure US20140274999A1-20140918-C00010
  • (i.e., 4-methoxybenzyl, PMB, MPM).
  • Variables R4 and R4′
  • R4 and R4′, are independently selected from the group consisting of halogen, —R6-R7, —CH2—R6-R7 and —CH═R7; wherein R6 is selected from the group consisting of a bond, oxygen, sulfur, alkyl, alkenyl, aryl, heteroaryl and heterocyclyl; wherein R7 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkanoyl, aroyl, heteroaroyl, carboxamide, aryl, heteroaryl and heterocyclyl; and wherein R7 is optionally, independently substituted 1-3 times with a substituent selected from alkyl, alkyl sulfite, heterocyclyl and NRaRb; wherein Ra and Rb are independently selected from the group consisting of hydrogen, alkyl, a nitrogen protecting group and C(O)NHRc; wherein Rc is an alkyl group or a heteroalkyl group; and wherein R4 and R4′ are optionally, independently substituted one or more times with an oxygen protecting group or a nitrogen protecting group.
  • In another embodiment of the method, R4 and R4′, are independently selected from the group consisting of hydrogen, chlorine, methyl, CH═CH—CH3, CH═CH2, CH2OC(O)CH3, CH2OC(O)NH2, CH2OCH3,
  • Figure US20140274999A1-20140918-C00011
  • wherein
    A, for each occurrence, is independently a pharmaceutically acceptable anion. In certain embodiments, A is selected from chloride, acetate, trifluoroacetate and bisulfate. In a particular embodiment, A is trifluoroacetate.
  • Figure US20140274999A1-20140918-C00012
  • In a particular embodiment, R4 is
  • Figure US20140274999A1-20140918-C00013
  • In another particular embodiment, R4′, is
  • Variable X
  • In certain embodiments, X is selected from the group consisting of halogen, —OC(O)R8 and —OSO2R8; wherein R8 is selected from the group consisting of alkyl, heteroalkyl, aryl and heteroaryl. In another embodiment of the method, X is —OSO2R8. In a particular embodiment, X is —OSO2CH3.
  • (II-1), (III-1) and (IV-1)
  • Particular embodiments of the compounds of formulas (II), (III) and (IV) are listed in Table 1. For example, in the synthesis of the antibiotic compound ceftolozane, the compounds of formulas (II), (III) and (IV) can have the structures of formulas (II-1), (III-1) and (IV-1), respectively.
  • Figure US20140274999A1-20140918-C00014
  • Synthesis
  • In one embodiment of the method, the suitable conditions comprise reacting in a mixture comprising an organic solvent and water. Organic solvents can be selected from the group consisting of aromatic solvents, aliphatic solvents, halogenated solvents, halogenated aromatic solvents, halogenated aliphatic solvents, ethers, halogenated ethers, esters and amides. In a particular embodiment, the organic solvent is selected from halogenated solvents. In another particular embodiment, the organic solvent is dichloromethane.
  • In another embodiment of the method, the suitable conditions comprise reacting in a mixture comprising an organic solvent and about 6-9 percent (w/w) water relative to the compound of formula (III), or salt thereof. In a particular embodiment, the suitable conditions comprise reaction in a mixture comprising an organic solvent and about 6-8 percent (w/w) water relative to the compound of formula (III), or salt thereof. In still another embodiment, the suitable conditions comprise reacting in a mixture comprising dichloromethane and about 6-9 percent of water relative to the compound of formula (III), or salt thereof.
  • Notably, the compound of formula (III) is hydrolytically stable under the reaction conditions, in the absence of the compound of formula (IV). As shown in FIG. 11 and described in Example 2, compound (III-1) was combined with dichloromethane and water in the same relative amounts as in Example 1. Upon stirring for four hours, no hydrolysis of (III-1) was observed. In contrast, under the same solvent, temperature and time conditions, but in the presence of compound (IV-1), compound (III-1) reacts to form compound (II-1).
  • In some embodiments, the method further comprises the step of reacting the compound of formula (II), or a salt thereof, under suitable conditions to form a compound of formula (V), or a salt thereof, wherein the compound of formula (V) is selected from the compounds of Table 2, or salts thereof. In some embodiments, the suitable conditions comprise reacting the compound of formula (II) with strong acid. In a particular embodiment, the strong acid is trifluoroacetic acid.
  • Compositions
  • In another aspect, provided herein is a composition comprising the compound of formula (V), or salt a thereof, and one or more compound selected from the group consisting of: the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof. In one embodiment, the composition comprises the compound of formula (V), or salt a thereof, the compound of formula (I) or salt a thereof, the compound of formula (Ia) or salt a thereof, and the compound of formula (Ib) or salt a thereof. In another embodiment of the composition, the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof, are present, if at all, in an amount that is less than or equal to 0.05% w/w. In yet another embodiment of the composition, the compound of formula (II), or salt a thereof, the compound of formula (III), or salt a thereof, and the compound of formula (IV), or salt a thereof, are present, if at all, in an amount that is less than or equal to 0.05 mol %. In another aspect, provided herein is a method of treating a bacterial infection in a patient, comprising the step of administering a composition as described above.
  • DEFINITIONS
  • Pharmaceutically acceptable salts are known to those of skill in the art. In some of the embodiments described herein, the compounds of formulas (II) and (III) are trifluoroacetate salts.
  • Oxygen and nitrogen protecting groups are known to those of skill in the art. Oxygen protecting groups include, but are not limited to methyl ethers, substituted methyl ethers (e.g., MOM (methoxymethyl ether), MTM (methylthiomethyl ether), BOM (benzyloxymethyl ether), PMBM or MPM (p-methoxybenzyloxymethyl ether), to name a few), substituted ethyl ethers, substituted benzyl ethers, silyl ethers (e.g., TMS (trimethylsilyl ether), TES (triethylsilylether), TIPS (triisopropylsilyl ether), TBDMS (t-butyldimethylsilyl ether), tribenzyl silyl ether, TBDPS (t-butyldiphenyl silyl ether), to name a few), esters (e.g., formate, acetate, benzoate (Bz), trifluoroacetate, dichloroacetate, to name a few), carbonates, cyclic acetals and ketals. Nitrogen protecting groups include, but are not limited to, carbamates (including methyl, ethyl and substituted ethyl carbamates (e.g., Troc), to name a few) amides, cyclic imide derivatives, N-alkyl and N-aryl amines, benzyl amines, substituted benzyl amines, trityl amines, imine derivatives, and enamine derivatives, for example.
  • In some embodiments, alkyl groups and groups comprising an alkyl group (e.g., alkoxy, alkanoyl, alkylamino, aminoalkyl, heteroalkyl) comprise 1-6 carbon atoms. In some embodiments, aryl groups and groups comprising aryl groups (e.g., aroyl) comprise 6-12 carbon atoms. In some embodiments, heteroaryl groups and groups comprising heteroaryl groups (e.g., heteroaroyl) comprise 1-10 carbon atoms and 1-4 heteroatoms selected from oxygen, nitrogen and sulfur.
  • TABLE 1
    Formula (II) Formula (III) Formula (IV)
     1
    Figure US20140274999A1-20140918-C00015
    Figure US20140274999A1-20140918-C00016
    Figure US20140274999A1-20140918-C00017
     2
    Figure US20140274999A1-20140918-C00018
    Figure US20140274999A1-20140918-C00019
    Figure US20140274999A1-20140918-C00020
     3
    Figure US20140274999A1-20140918-C00021
    Figure US20140274999A1-20140918-C00022
    Figure US20140274999A1-20140918-C00023
     4
    Figure US20140274999A1-20140918-C00024
    Figure US20140274999A1-20140918-C00025
    Figure US20140274999A1-20140918-C00026
     5
    Figure US20140274999A1-20140918-C00027
    Figure US20140274999A1-20140918-C00028
    Figure US20140274999A1-20140918-C00029
     6
    Figure US20140274999A1-20140918-C00030
    Figure US20140274999A1-20140918-C00031
    Figure US20140274999A1-20140918-C00032
     7
    Figure US20140274999A1-20140918-C00033
    Figure US20140274999A1-20140918-C00034
    Figure US20140274999A1-20140918-C00035
     8
    Figure US20140274999A1-20140918-C00036
    Figure US20140274999A1-20140918-C00037
    Figure US20140274999A1-20140918-C00038
     9
    Figure US20140274999A1-20140918-C00039
    Figure US20140274999A1-20140918-C00040
    Figure US20140274999A1-20140918-C00041
    10
    Figure US20140274999A1-20140918-C00042
    Figure US20140274999A1-20140918-C00043
    Figure US20140274999A1-20140918-C00044
    11
    Figure US20140274999A1-20140918-C00045
    Figure US20140274999A1-20140918-C00046
    Figure US20140274999A1-20140918-C00047
    12
    Figure US20140274999A1-20140918-C00048
    Figure US20140274999A1-20140918-C00049
    Figure US20140274999A1-20140918-C00050
    13
    Figure US20140274999A1-20140918-C00051
    Figure US20140274999A1-20140918-C00052
    Figure US20140274999A1-20140918-C00053
    14
    Figure US20140274999A1-20140918-C00054
    Figure US20140274999A1-20140918-C00055
    Figure US20140274999A1-20140918-C00056
    15
    Figure US20140274999A1-20140918-C00057
    Figure US20140274999A1-20140918-C00058
    Figure US20140274999A1-20140918-C00059
    16
    Figure US20140274999A1-20140918-C00060
    Figure US20140274999A1-20140918-C00061
    Figure US20140274999A1-20140918-C00062
    17
    Figure US20140274999A1-20140918-C00063
    Figure US20140274999A1-20140918-C00064
    Figure US20140274999A1-20140918-C00065
    18
    Figure US20140274999A1-20140918-C00066
    Figure US20140274999A1-20140918-C00067
    Figure US20140274999A1-20140918-C00068
    19
    Figure US20140274999A1-20140918-C00069
    Figure US20140274999A1-20140918-C00070
    Figure US20140274999A1-20140918-C00071
    20
    Figure US20140274999A1-20140918-C00072
    Figure US20140274999A1-20140918-C00073
    Figure US20140274999A1-20140918-C00074
    21
    Figure US20140274999A1-20140918-C00075
    Figure US20140274999A1-20140918-C00076
    Figure US20140274999A1-20140918-C00077
    22
    Figure US20140274999A1-20140918-C00078
    Figure US20140274999A1-20140918-C00079
    Figure US20140274999A1-20140918-C00080
    23
    Figure US20140274999A1-20140918-C00081
    Figure US20140274999A1-20140918-C00082
    Figure US20140274999A1-20140918-C00083
    24
    Figure US20140274999A1-20140918-C00084
    Figure US20140274999A1-20140918-C00085
    Figure US20140274999A1-20140918-C00086
    25
    Figure US20140274999A1-20140918-C00087
    Figure US20140274999A1-20140918-C00088
    Figure US20140274999A1-20140918-C00089
    26
    Figure US20140274999A1-20140918-C00090
    Figure US20140274999A1-20140918-C00091
    Figure US20140274999A1-20140918-C00092
    27
    Figure US20140274999A1-20140918-C00093
    Figure US20140274999A1-20140918-C00094
    Figure US20140274999A1-20140918-C00095
    28
    Figure US20140274999A1-20140918-C00096
    Figure US20140274999A1-20140918-C00097
    Figure US20140274999A1-20140918-C00098
    29
    Figure US20140274999A1-20140918-C00099
    Figure US20140274999A1-20140918-C00100
    Figure US20140274999A1-20140918-C00101
    30
    Figure US20140274999A1-20140918-C00102
    Figure US20140274999A1-20140918-C00103
    Figure US20140274999A1-20140918-C00104
    31
    Figure US20140274999A1-20140918-C00105
    Figure US20140274999A1-20140918-C00106
    Figure US20140274999A1-20140918-C00107
    32
    Figure US20140274999A1-20140918-C00108
    Figure US20140274999A1-20140918-C00109
    Figure US20140274999A1-20140918-C00110
  • TABLE 2
    Formula (V)
    V-1
    Figure US20140274999A1-20140918-C00111
    V-2
    Figure US20140274999A1-20140918-C00112
    V-3
    Figure US20140274999A1-20140918-C00113
    V-4
    Figure US20140274999A1-20140918-C00114
    V-5
    Figure US20140274999A1-20140918-C00115
    V-6
    Figure US20140274999A1-20140918-C00116
    V-7
    Figure US20140274999A1-20140918-C00117
    V-8
    Figure US20140274999A1-20140918-C00118
    V-9
    Figure US20140274999A1-20140918-C00119
    V-10
    Figure US20140274999A1-20140918-C00120
    V-11
    Figure US20140274999A1-20140918-C00121
    V-12
    Figure US20140274999A1-20140918-C00122
    V-13
    Figure US20140274999A1-20140918-C00123
    V-14
    Figure US20140274999A1-20140918-C00124
    V-15
    Figure US20140274999A1-20140918-C00125
    V-16
    Figure US20140274999A1-20140918-C00126
    V-17
    Figure US20140274999A1-20140918-C00127
    V-18
    Figure US20140274999A1-20140918-C00128
    V-19
    Figure US20140274999A1-20140918-C00129
    V-20
    Figure US20140274999A1-20140918-C00130
    V-21
    Figure US20140274999A1-20140918-C00131
    V-22
    Figure US20140274999A1-20140918-C00132
    V-23
    Figure US20140274999A1-20140918-C00133
    V-24
    Figure US20140274999A1-20140918-C00134
    V-25
    Figure US20140274999A1-20140918-C00135
    V-26
    Figure US20140274999A1-20140918-C00136
    V-27
    Figure US20140274999A1-20140918-C00137
    V-28
    Figure US20140274999A1-20140918-C00138
    V-29
    Figure US20140274999A1-20140918-C00139
    V-30
    Figure US20140274999A1-20140918-C00140
    V-31
    Figure US20140274999A1-20140918-C00141
    V-32
    Figure US20140274999A1-20140918-C00142
  • EXAMPLES Materials and Instrumentation
  • Compound characterization was obtained by high resolution mass spectrometry (HRMS) and high resolution mass spectrometry/mass spectrometry (HR MS/MS). Samples were dissolved in solution and the sample solutions were directly infused into time-of-flight (TOF) mass spectrometer to obtain parent (MS) and product scans (MS/MS) of analyte. Suitable materials and instrumentation are known to persons of skill in the art.
  • Example 1 Synthesis of Compound (II-1) (1) Synthesis of compound (IV-1): (Z)-2-(5-amino-1,2,4-thiadiazol-3-O-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetic methanesulfonic anhydride
  • Figure US20140274999A1-20140918-C00143
  • A 5.0 liter reactor was charged with N,N-dimethylacetamide (1.4 L). Solid (Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetic acid (250 g, 1 eq., prepared according to the method disclosed in U.S. Pat. No. 7,129,232) was added to the reactor at ambient temperature and the mixture was stirred until the solid was dissolved. The solution was cooled to about 4° C. (target: 2-5° C.) and stirred for another 10-15 minutes. Potassium carbonate (106.7 g, 184.9 mmol, 1.1 eq.) was added to the reactor in one portion. Methanesulfonyl chloride (118.0 mL, 2.2 eq.) was added to the reactor at a rate of about 5 mL/min while maintaining the batch temperature <10° C. The reaction was stirred for 1-2 hours at about 6° C., then cooled to about 0-5° C. Ethyl acetate (2.5 L, 10 volumes) was added to the reactor while maintaining a temperature of about 0-5° C. 1.6% HCl (aq) (1.35 L) was added to the reactor, maintaining a temperature of about 10-15° C. The biphasic mixture was agitated and the layers were then separated. The organic layer was washed with sodium chloride solution, dried with sodium sulfate and concentrated under reduced pressure to obtain crude material. The crude material was dissolved in ethyl acetate (150 mL) and filtered over silica gel. The filtrate was concentrated under reduced pressure to yield the title compound (299 g, 96.7%) as a colorless solid. Exact Mass: 408.08. HRMS: 409.0846 (M+1).
  • (2) Synthesis of compound (III-1): 5-amino-4-(3-(2-((tert-butoxycarbonyl)amino)ethyl)ureido)-2-(((6R,7R)-7-((Z)-(2-hydroxybenzylidene)amino)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methyl)-1-methyl-1H-pyrazol-2-ium trifluoroacetate
  • Figure US20140274999A1-20140918-C00144
  • Compound (III-1) was prepared by coupling the compound (6R,7R)-4-methoxybenzyl 3-(chloromethyl)-7-((Z)-(2-hydroxybenzylidene)amino)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (purchased from Nippon Chemicals, Japan) with the compound tert-butyl (2-(3-(1-methyl-5-(tritylamino)-1H-pyrazol-4-yl)ureido)ethyl)carbamate (prepared according to the method disclosed in U.S. Pat. No. 7,129,232). Exact Mass (-TFA): 977.40. HRMS: 977.4025 (M+).
  • (3) Synthesis of compound (II-1): 5-amino-2-(((6R,7R)-7-((Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetamido)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methyl)-4-(3-(2-((tert-butoxycarbonyl)amino)ethyl)ureido)-1-methyl-1H-pyrazol-2-ium trifluoroacetate
  • Figure US20140274999A1-20140918-C00145
  • A reactor was charged with compound (III-1) (150 g), water (11.25 mL), compound (IV-1) (60 g), and dichloromethane (265 mL). The mixture was stirred for three hours at room temperature, then added to methyl tertiary butyl ether (1.5 L) over the course of 2-3 hours, resulting in the formation of a solid. The solid was filtered and the filter cake was washed with additional methyl tertiary butyl ether (1.0 L). The solid was dried under vacuum to yield the title compound (142.1 g, 81.2%). Exact Mass: 943.36 (-TFA). HRMS: 943.3555 (M+).
  • (4) Synthesis of Ceftolozane Trifluoroacetate
  • Figure US20140274999A1-20140918-C00146
  • Compound (II-1) was dissolved in dichloromethane. Trifluoroacetic acid and anisole were added and the reaction was stirred for about 3 hours. Methyl tertiary butyl ether was added, causing the formation of a precipitate. The precipitate was collected by filtration and dried under vacuum to yield the title compound. Exact Mass (-TFA): 667.18. HRMS: 667.1810 (M+).
  • Example 2
  • Compound (III-1) (2.12 g) was dissolved in dichloromethane (3.75 ml). Water (160 uL) was added and the mixture was stirred for four hours, with hourly monitoring by HPLC.
  • Example 3 Synthesis of 4-(2-W7R)-7-((Z)-2-(ethoxyimino)-2-(5-(phosphonoamino)-1,2,4-thiadiazol-3-yl)acetamido)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)thio)thiazol-4-yl)-1-methylpyridin-1-ium trifluoroacetate
  • Figure US20140274999A1-20140918-C00147
  • A reactor is charged with 4-(2-(((7R)-7-((Z)-(2-hydroxybenzylidene)amino)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)thio)thiazol-4-yl)-1-methylpyridin-1-ium trifluoroacetate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-(phosphonoamino)-1,2,4-thiadiazol-3-yl)-2-(ethoxyimino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base). The mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid. The solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether. The solid is dried under vacuum to yield the title compound.
  • Example 4 Synthesis of 4-methoxybenzyl 7((Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((4-methoxybenzyl)oxy)imino)acetamido)-3-(E)-((R)-1′-(tert-butoxycarbonyl)-2-oxo-[1,3′-bipyrrolidin]-3-ylidene)methyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate
  • Figure US20140274999A1-20140918-C00148
  • A reactor is charged with (7R)-4-methoxybenzyl-3-((E)-((R)-1′-(tert-butoxycarbonyl)-2-oxo-[1,3′-bipyrrolidin]-3-ylidene)methyl)-7-((Z)-(2-hydroxybenzylidene)amino)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((4-methoxybenzyl)oxy)imino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base). The mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid. The solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether. The solid is dried under vacuum to yield the title compound.
  • Example 5 Synthesis of 1-W6R,7R)-7-((Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetamido)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methyl)pyridin-1-ium trifluoroacetate
  • Figure US20140274999A1-20140918-C00149
  • A reactor is charged with 1-(((7R)-7-((Z)-(2-hydroxybenzylidene)amino)-2-(((4-methoxybenzyl)oxy)carbonyl)-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methyl)pyridin-1-ium trifluoroacetate (1 eq), water (6-9 weight % relative to the Schiff base), (Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(((1-(tert-butoxy)-2-methyl-1-oxopropan-2-yl)oxy)imino)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base). The mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid. The solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether. The solid is dried under vacuum to yield the title compound.
  • Example 6 Synthesis of (7R)-4-methoxybenzyl 74(R)-2-((tert-butoxycarbonyl)amino)-2-phenylacetamido)-3-methyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate
  • Figure US20140274999A1-20140918-C00150
  • A reactor is charged with (7R)-4-methoxybenzyl 7-((Z)-(2-hydroxybenzylidene)amino)-3-methyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), (R)-2-((tert-butoxycarbonyl)amino)-2-phenylacetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base). The mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid. The solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether. The solid is dried under vacuum to yield the title compound.
  • Example 7 Synthesis of 4-methoxybenzyl 3-((carbamoyloxy)methyl)-7-methoxy-8-oxo-7-(2-(thiophen-2-yl)acetamido)-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate
  • Figure US20140274999A1-20140918-C00151
  • A reactor is charged with (75)-4-methoxybenzyl 3-((carbamoyloxy)methyl)-7-((Z)-(2-hydroxybenzylidene)amino)-7-methoxy-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate (1 eq), water (6-9 weight % relative to the Schiff base), 2-(thiophen-2-yl)acetic methanesulfonic anhydride (2.5 eq) and dichloromethane (1.75 mL per gram of Schiff base). The mixture is stirred for three hours at room temperature, then added to methyl tertiary butyl ether over the course of 2-3 hours, resulting in the formation of a solid. The solid is filtered and the filter cake was washed with additional methyl tertiary butyl ether. The solid is dried under vacuum to yield the title compound.

Claims (16)

1. A method for preparing a compound of formula (II-1), or a salt thereof,
Figure US20140274999A1-20140918-C00152
comprising the step of reacting a compound of formula (III-1), or a salt thereof,
Figure US20140274999A1-20140918-C00153
with a compound of formula (IV-1), or a salt thereof,
Figure US20140274999A1-20140918-C00154
in a mixture comprising an organic solvent and about 6-9 percent (w/w) of water relative to the compound of formula (III-1), or salt thereof.
2. The method of claim 1, wherein the organic solvent is dichloromethane.
3. The method of claim 1, wherein the compound of formula (IV-1) is prepared from the compound of formula (IVa):
Figure US20140274999A1-20140918-C00155
by a process comprising the steps of:
(a) forming a mixture comprising potassium carbonate and the compound of formula (IVa); and
(b) adding methansulfonyl chloride to the mixture of step (a) such that the compound of formula (IV-1) is formed.
4. The method of claim 1, further comprising the step of reacting the compound of formula (II-1), or a salt thereof, with a strong acid to form a compound of formula (V-1), or a salt thereof:
Figure US20140274999A1-20140918-C00156
5. The method of claim 4, wherein the strong acid is trifluoroacetic acid.
6. A composition comprising two or more compounds selected from the group consisting of:
(a) the compound of formula (II-1), or a salt thereof
Figure US20140274999A1-20140918-C00157
(b) the compound of formula (III-1), or a salt thereof
Figure US20140274999A1-20140918-C00158
and
(c) the compound of formula (IV-1), or a salt thereof
Figure US20140274999A1-20140918-C00159
7. The composition of claim 6, comprising the compound of formula (II-1), or a salt thereof, and the compound of formula (III-1), or a salt thereof.
8. The composition of claim 7, comprising the compound of formula (II-1), or a salt thereof, the compound of formula (III-1), or a salt thereof, and the compound of formula (IV-1), or a salt thereof.
9. The composition of claim 6, further comprising the compound of formula (V-1), or salt a thereof
Figure US20140274999A1-20140918-C00160
10. The composition of claim 9, wherein the compound of formula (II-1), or salt a thereof, the compound of formula (III-1), or salt a thereof, and the compound of formula (IV-1), or salt a thereof, are each present in an amount that is less than 0.05%.
11. The composition of claim 9, prepared by a method comprising the steps of:
(a) reacting a compound of formula (III-1), or a salt thereof, with a compound of formula (IV-1), or a salt thereof, in a mixture comprising an organic solvent and about 6-9 percent (w/w) of water relative to the compound of formula (III-1), or salt thereof; and
(b) reacting the compound of formula (II-1), or a salt thereof, with a strong acid to form a compound of formula (V-1), or a salt thereof.
12. A compound selected from the group consisting of:
Figure US20140274999A1-20140918-C00161
13. The compound of claim 12 having the structure
Figure US20140274999A1-20140918-C00162
14. The compound of claim 12 having the structure
Figure US20140274999A1-20140918-C00163
15. The method of claim 1, wherein the weight ratio of the compound of formula (III-1) to the compound of formula (IV-1) is 150 g:60 g.
16. The method of claim 1, wherein the organic solvent is dichloromethane; wherein the compound of formula (IV-1) is prepared from the compound of formula (IVa):
Figure US20140274999A1-20140918-C00164
by a process comprising the steps of:
(a) forming a mixture comprising potassium carbonate and the compound of formula (IVa); and
(b) adding methansulfonyl chloride to the mixture of step (a) such that the compound of formula (IV-1) is formed;
wherein the method further comprises the step of reacting the compound of formula (II-1), or a salt thereof, with a strong acid to form a compound of formula (V-1), or a salt thereof:
Figure US20140274999A1-20140918-C00165
and
wherein the strong acid is trifluoroacetic acid.
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