US20120230338A1 - Biological data networks and methods therefor - Google Patents
Biological data networks and methods therefor Download PDFInfo
- Publication number
- US20120230338A1 US20120230338A1 US13/417,188 US201213417188A US2012230338A1 US 20120230338 A1 US20120230338 A1 US 20120230338A1 US 201213417188 A US201213417188 A US 201213417188A US 2012230338 A1 US2012230338 A1 US 2012230338A1
- Authority
- US
- United States
- Prior art keywords
- data
- information
- sequence data
- sequence
- network
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
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Classifications
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L45/00—Routing or path finding of packets in data switching networks
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F2209/00—Indexing scheme relating to G06F9/00
- G06F2209/48—Indexing scheme relating to G06F9/48
- G06F2209/484—Precedence
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F9/00—Arrangements for program control, e.g. control units
- G06F9/06—Arrangements for program control, e.g. control units using stored programs, i.e. using an internal store of processing equipment to receive or retain programs
- G06F9/46—Multiprogramming arrangements
- G06F9/52—Program synchronisation; Mutual exclusion, e.g. by means of semaphores
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- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Theoretical Computer Science (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Medical Informatics (AREA)
- Signal Processing (AREA)
- Computer Networks & Wireless Communication (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Measuring And Recording Apparatus For Diagnosis (AREA)
- Data Exchanges In Wide-Area Networks (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Mobile Radio Communication Systems (AREA)
- Telephonic Communication Services (AREA)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US13/417,188 US20120230338A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
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US201161451086P | 2011-03-09 | 2011-03-09 | |
US201161539931P | 2011-09-27 | 2011-09-27 | |
US201161539942P | 2011-09-27 | 2011-09-27 | |
US13/417,188 US20120230338A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
Publications (1)
Publication Number | Publication Date |
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US20120230338A1 true US20120230338A1 (en) | 2012-09-13 |
Family
ID=46795538
Family Applications (7)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US13/417,193 Expired - Fee Related US8982879B2 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,184 Abandoned US20120233201A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,188 Abandoned US20120230338A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,190 Abandoned US20120233202A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,189 Abandoned US20120232874A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,187 Abandoned US20120236861A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,192 Expired - Fee Related US9215162B2 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
Family Applications Before (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US13/417,193 Expired - Fee Related US8982879B2 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,184 Abandoned US20120233201A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
Family Applications After (4)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US13/417,190 Abandoned US20120233202A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,189 Abandoned US20120232874A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,187 Abandoned US20120236861A1 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
US13/417,192 Expired - Fee Related US9215162B2 (en) | 2011-03-09 | 2012-03-09 | Biological data networks and methods therefor |
Country Status (2)
Country | Link |
---|---|
US (7) | US8982879B2 (fr) |
WO (7) | WO2012122546A2 (fr) |
Cited By (24)
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US9350802B2 (en) | 2012-06-22 | 2016-05-24 | Annia Systems Inc. | System and method for secure, high-speed transfer of very large files |
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US20170330105A1 (en) * | 2016-05-13 | 2017-11-16 | Cognitive Scale, Inc. | Ranking of Parse Options Using Machine Learning |
US20170344698A1 (en) * | 2016-03-09 | 2017-11-30 | Jennifer Griffin | Evidence based system and method for identifying factors of disease |
WO2018071079A1 (fr) * | 2016-10-11 | 2018-04-19 | Genomsys Sa | Procédé et systèmes d'indexation de données biométriques |
US10395758B2 (en) | 2013-08-30 | 2019-08-27 | 10X Genomics, Inc. | Sequencing methods |
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US10669583B2 (en) | 2012-08-14 | 2020-06-02 | 10X Genomics, Inc. | Method and systems for processing polynucleotides |
US10676789B2 (en) | 2012-12-14 | 2020-06-09 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US10745742B2 (en) | 2017-11-15 | 2020-08-18 | 10X Genomics, Inc. | Functionalized gel beads |
US10752949B2 (en) | 2012-08-14 | 2020-08-25 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US10752950B2 (en) | 2012-08-14 | 2020-08-25 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US10829815B2 (en) | 2017-11-17 | 2020-11-10 | 10X Genomics, Inc. | Methods and systems for associating physical and genetic properties of biological particles |
US10839939B2 (en) | 2014-06-26 | 2020-11-17 | 10X Genomics, Inc. | Processes and systems for nucleic acid sequence assembly |
US10854315B2 (en) | 2015-02-09 | 2020-12-01 | 10X Genomics, Inc. | Systems and methods for determining structural variation and phasing using variant call data |
US11030276B2 (en) | 2013-12-16 | 2021-06-08 | 10X Genomics, Inc. | Methods and apparatus for sorting data |
US11081208B2 (en) | 2016-02-11 | 2021-08-03 | 10X Genomics, Inc. | Systems, methods, and media for de novo assembly of whole genome sequence data |
US11193121B2 (en) | 2013-02-08 | 2021-12-07 | 10X Genomics, Inc. | Partitioning and processing of analytes and other species |
US11473138B2 (en) | 2012-12-14 | 2022-10-18 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US11591637B2 (en) | 2012-08-14 | 2023-02-28 | 10X Genomics, Inc. | Compositions and methods for sample processing |
US11629344B2 (en) | 2014-06-26 | 2023-04-18 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US11898206B2 (en) | 2017-05-19 | 2024-02-13 | 10X Genomics, Inc. | Systems and methods for clonotype screening |
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US9773091B2 (en) | 2011-10-31 | 2017-09-26 | The Scripps Research Institute | Systems and methods for genomic annotation and distributed variant interpretation |
EP2595076B1 (fr) * | 2011-11-18 | 2019-05-15 | Tata Consultancy Services Limited | Compression de données génomiques |
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US11342048B2 (en) | 2013-03-15 | 2022-05-24 | The Scripps Research Institute | Systems and methods for genomic annotation and distributed variant interpretation |
WO2014149972A1 (fr) | 2013-03-15 | 2014-09-25 | The Scripps Research Institute | Systèmes et procédés pour l'annotation génomique et l'interprétation de variant distribué |
EP2816496A1 (fr) * | 2013-06-19 | 2014-12-24 | Sophia Genetics S.A. | Procédé pour gérer des données génomiques brutes d'une manière préservant la confidentialité dans une biobanque |
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WO2015120170A1 (fr) | 2014-02-05 | 2015-08-13 | Bigdatabio, Llc | Procédés et systèmes de transfert et de cryptage par compression de séquences biologiques |
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Also Published As
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WO2012122553A2 (fr) | 2012-09-13 |
WO2012122546A2 (fr) | 2012-09-13 |
US20120236861A1 (en) | 2012-09-20 |
WO2012122555A2 (fr) | 2012-09-13 |
WO2012122551A2 (fr) | 2012-09-13 |
WO2012122547A3 (fr) | 2012-11-15 |
US20120233202A1 (en) | 2012-09-13 |
US20120233201A1 (en) | 2012-09-13 |
WO2012122549A2 (fr) | 2012-09-13 |
WO2012122547A2 (fr) | 2012-09-13 |
US9215162B2 (en) | 2015-12-15 |
WO2012122546A3 (fr) | 2013-01-03 |
WO2012122555A3 (fr) | 2012-12-27 |
WO2012122551A3 (fr) | 2012-12-06 |
US20120230326A1 (en) | 2012-09-13 |
US8982879B2 (en) | 2015-03-17 |
WO2012122548A3 (fr) | 2012-11-15 |
WO2012122549A3 (fr) | 2012-11-15 |
WO2012122553A3 (fr) | 2012-11-29 |
US20120230339A1 (en) | 2012-09-13 |
WO2012122548A2 (fr) | 2012-09-13 |
US20120232874A1 (en) | 2012-09-13 |
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