US20090111775A1

US20090111775A1 - Molecular transporter compositions comprising dendrimeric oligoguanidine with a tri-functional core that facilitates delivery into cells in vivo

Info

Publication number: US20090111775A1
Application number: US12/079,577
Authority: US
Inventors: Yong-fu Li
Original assignee: GeneTools Inc
Current assignee: GeneTools Inc
Priority date: 2007-10-25
Filing date: 2008-03-26
Publication date: 2009-04-30
Also published as: US20120035358A1; WO2009055027A3; US8637492B2; US7935816B2; US20090171075A1; WO2009055027A2

Abstract

Novel molecular transporter compositions and their use for transporting bioactive substances into cells in living animals are disclosed. To afford in vivo delivery, the composition is covalently linked to the bioactive substance and the resultant composite structure is introduced into the subject. The transporter composition includes multiple guanidine moieties on a dendrimeric scaffold having a tri-functional core. The tri-functional core is a phosphorodiamidate or phosphoramide moiety.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a continuation-in-part of Ser. No. 11/977,800, filed Oct. 25, 2007, by the present inventor.

BACKGROUND OF THE INVENTION

1. Field of the Invention
The invention relates to the preparation and use of dendrimeric oligoguanidine on a tri-functional core effective for transporting bioactive substances into the cytosol of cells in vivo. The compositions contain guanidinium headgroups assembled around a tri-functional phosphoramide or phosphorodiamidate core.
2. Objects and Advantages
While considerable structural diversity is found among drugs and probe molecules which act on intracellular targets, the physical properties of most of these agents are restricted to a narrow range to ensure passage through the polar extra-cellular milieu and the non-polar lipid bilayer of the cell. This can be problematic in the field of drug discovery where the bioactive substances are impermeable or poorly permeable to the cells in animals. Cellular membranes are particularly impermeable to highly charged compounds such as polynucleotides, or neutral antisense macromolecules, such as Morpholino oligos and peptide nucleic acids. When a high molecular weight bioactive molecule (e.g. Morpholino oligo) is administered to an organism, its medicinal utility is generally limited by its inability to efficiently gain access to its intracellular target.
Researchers have attempted to develop technologies for enhancing the transport of chemical compounds across organismal barriers. For instance, Frankel et al. report the conjugation of selected molecules to HIV TAT protein (Frankel et al., PCT Pub. No. WO 91/09958 (1991)). Barsoum discusses the use of the HIV TAT peptide sequence RKKRRQRRR for enhancing transport across cellular membranes (Barsourn et al., PCT Pub. No. WO 94/04686 (1994)). Wender et al. discuss the use of oligoarginine moieties for increasing the delivery of various molecules across cellular membranes (Wender et al., US2003/0032593).
The enormous potential of arginine-based molecular transporters has stimulated efforts to develop improved structures for delivery of large polar molecules into cells. However, researchers have concluded from a large number of molecular transporters containing arginines in peptide or peptoid assembly, or guanidines in a variety of backbones, that (a) the guanidine headgroups are principally responsible for its uptake into cells, (b) backbone chirality is not critical for cellular uptake, and (c) the number of guanidine head groups between 7 and 15 is optimal for efficient uptake (Rothbard, J. B., et al. J. Am. Chem. Soc. 126:9506-9597 (2004)). Therefore, methods and compositions have been described for transporting drugs and macromolecules across biological membranes in which the drug or macromolecule is covalently attached to a transport polymer consisting of a scaffold containing oligoguanidines.
However, the practical application of such oligoguanidine transporters is generally limited due to their high cost and difficulty of use. Usually these oligoguanidines are prepared using a solid-phase synthesizer. Although this approach is readily automated and allows for the synthesis and purification of long oligomers, it suffers drawbacks including high cost, limited scalability, and the need for resin attachment and cleavage. In contrast, solution phase synthesis could avoid the cost and scale restrictions of resins. Despite numerous reports about the importance of guanidine groups in the peptidic backbone of oligoguanidines, most oligoguanidine delivery moieties have a linear structure, while relatively few attempts have been made using guanidine groups in branched architectures. In one such rare case, polyguanidino dendrimers using triamine-based diamino acid monomeric units were synthesized and their delivery efficacy out-performed an oligoarginine reference standard (Wender, P. A., et al. Organic Letters 7:4815-4818 (2005)). Branched-chain arginine peptides also have the ability to translocate through cell membranes and to bring exogenous proteins into cells (Futaki, S., et al. Biochemistry 41:7925-7930 (2002)). Dendrimeric oligoguanidines based on amino triol subunits are capable of translocation through the cell membrane (Chung, H.-H., et al. Biopolymers (Pept. Sci.) 76:83-96(2004)). An alternative architecture based on amino triacid scaffold demonstrated that the dendrimeric molecular transporters can not only enable transport of bioactive cargo across the cell membrane, but also control the delivery into defined intracellular compartments (Huang, K., et al. Bioconjugate Chem. 18: 403-409 (2007)).
However, the syntheses of the dendrimeric oligoguanidines mentioned above are lengthy or involve expensive reagents for their assembly. A need clearly exists for new compositions and methods offering superior performance in transporting compounds across biological barriers, as well as being more cost-effective to make and to link to their bioactive substances to be transported into cells. The present invention fulfills these and other needs.

SUMMARY OF THE INVENTION

Dendrimers represent an attractive transporter scaffold that offers the advantages of economical assembly of oligoguanidine transporters through a variant of a segment-multiplying strategy. In the parent patent application, triazine was used as a tri-functional core for assembly of oligoguanidine. In this continuation-in-part application, an alternate tri-functional phosphoramide core also possesses an orthogonal core in which two sites can be used for branching side arms (or side chains) while a bioactive substance can be attached to its third functional site (or a trunk, a linking group for conjugation). Specifically, each arm of a two-arm dendrimer core can be extended with a two-arm segment to give a four-arm first generation product. Repetition of this cycle then leads to an eight-arm system capable of incorporating eight guanidine groups. Therefore, dendrimeric assembly is one of the most efficient ways to construct a molecule containing multiple head groups, which in this specific case, will be guanidine entities. Moreover, since phosphoramide architecture is strange in the living system, some problems such as antigenicity and toxicity, which many peptide-based molecular transporters suffer from, may be avoided, and therefore bioavailability, stability and safety for use in vivo may be improved.
One aspect of the invention relates to a method for the preparation of a scaffold by using phosphoramide as its core structure. One site on this triple functional core provides for linking covalently to a bioactive substance via a leash or a linking group which can be either permanent or cleavable by biological means, such as proteases, lipase or reductases, or by other means such as photolysis. The other two functional sites of the core are used for anchoring the dendrimeric arms.
Another aspect of the invention pertains to a method for the preparation of an oligoguanidine compound, comprising the steps of: (a) contacting an oligomer having a plurality of chemically tethered amines, wherein a portion of the tethered amines have attached protecting groups, with a protecting group removal agent to remove each of the protecting groups to produce an oligomer having a plurality of chemically tethered amines; and (b) contacting said oligomer having a plurality of chemically tethered amines with a guanidinylation reagent to convert each of said chemically tethered amines to a guanidinyl group to produce an oligoguanidine compound.
Yet another aspect of the invention relates to the process where the chemically tethered amines generated from removal of protecting groups are used directly for converting to guanidine by a specific composition containing a certain concentration of ammonia and a selected guanidinylation reagent, and by selected reaction conditions including a selected range of reaction time and reaction temperature.
Yet another aspect of the invention relates to the synthetic scheme where the protected scaffold is attached to a bioactive substance in protected form. Removal of the protecting groups to generate the chemically tethered amines, followed by addition of a guanidinylation reagent to convert each of said chemically tethered amines to a guanidinyl group produces a conjugate containing the transporter composition and a bioactive substance.
Yet another aspect of the invention relates to the compositions comprising oligoguanidine delivery moiety covalently linked to substantially non-ionic antisense oligos including Morpholino oligos.
Yet another aspect of the invention relates to the use of said compositions for modifying gene expression in living subjects. Morpholinos have been shown to be effective to block translation, to alter mRNA splicing and to block binding of regulatory proteins to RNA. Splicing-blocking morpholinos can delete exons and facilitate the study of specific splice-forms of a gene with multiple splice variants. A morpholino oligo conjugated with the transporter composition of this invention works effectively in vivo to block translation of a selected mRNA and to modify splicing of a selected pre-mRNA.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 illustrates a representative synthetic scheme for assembling an octaguanidine of the invention. (a): The synthetic components are prepared from readily available starting materials. (b-d): The assembly starts from phosphorus oxychloride. The first chloride is substituted by a nitrogen moiety used at a later stage for adding a linking group for conjugating with a bioactive substance. The other two chlorides are substituted by dialcoholamine, doubling the functional groups to tetra-alcohol. Activation of the tetra-alcohol to reactive carbonate, followed by introduction of secondary amine entities each containing two suitably protected primary amino groups, gives a phosphoramide core scaffold containing a central nitrogen in protected form and eight side chains each with a protected primary amino group. After removal of the protecting group of the central nitrogen, a linking group is installed, the other end of which reacts to conjugate with a bioactive substance. Removal of the protecting groups for the side chains, followed by guanidinylation, gives a conjugate of transporter composition and bioactive substance. (e): Morpholino as a representative bioactive substance is shown in a conjugate with the transporter composition.

FIG. 2 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing four side chains each with a protected primary amine.

FIG. 3 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing six side chains each with a protected primary amine. The multiplication of the side chains takes the advantage of aminotriol, where the amino group reacts with the dichloro derivative and the resultant hexa-alcohols are activated to form reactive carbonate. The carbonates are then treated with suitably protected amines to give hexa-primary amines in a protected form.

FIG. 4 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing twelve side chains with a protected primary amine. By using the same reactive carbonate intermediate as shown in FIG. 3, and introducing a triamine containing a reactive secondary amine and two suitably protected primary amino groups, a dozen of side chains each with a protected primary amine are furnished.

FIG. 5 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing sixteen side chains with a protected primary amine. By using the same reactive carbonate intermediate as shown in FIG. 1 b, treatment of diethanolamine gives octa-alcohol. Activation of the alcohol to the corresponding carbonate intermediate, followed by introduction of a triamine containing a reactive secondary amine and two suitably protected primary amino groups gives a phosphoramide scaffold containing sixteen side chains each with a protected primary amine.

FIG. 6 illustrates a synthetic scheme of assembling a rigid core scaffold containing eight side chains each with a protected primary amine and a protected central nitrogen functional group. This scheme takes advantage of the relative reactivities of phosphorus oxychloride in such a way that mono-substituted dichloro derivative can be converted to a diamine derivative as nucleophile to attack a di-substituted monochloro derivative to form a dendrimeric structure containing eight side chains in a rigid core.

FIG. 7 illustrates a synthetic scheme of assembling a flexible core scaffold containing eight side chains each with a protected primary amine and a protected central nitrogen functional group. This scheme takes advantage of phosphorodiamidate and its analogs containing a leash which the terminal amine, after deprotection, can be used as nucleophile to attack its own precursor, monosubstituted dichloro derivative, to form a scaffold containing eight side chains each with a protected primary amine.

FIG. 8 illustrates a general scheme following FIGS. 2, 3, 4, 5, 6 and 7 for subsequent manipulation. The linking site generated after deprotection, is coupled with a linking group. The active end of the linking group is connected with a bioactive substance. The oligoamines, generated from removing the protecting groups, undergoes guanidinylation to give an oligoguanidine conjugated with bioactive substance.

FIG. 9 illustrates one scheme of assembling oligoguanidine in a pre-formed manner. Therefore, this strategy represents the complementary method of installing guanidine prior to conjugation with a bioactive substance. The same deprotection strategy is applied for generating the central reactive nitrogen for installation of a linker and subsequent conjugation with a bioactive substance.

DETAILED DESCRIPTION OF THE INVENTION

I. Abbreviations and Definitions:

Before describing detailed embodiments of the invention, it will be useful to set forth abbreviations and definitions that are used in describing the invention. The definitions set forth apply only to the terms as they are used in this patent. The following description of the preferred embodiments and examples are provided by way of explanation and illustration. As such, they are not to be viewed as limiting the scope of the invention as defined by the claims. Additionally, when examples are given, they are intended to be exemplary only and not to be restrictive. For example, when an example is said to “include” a specific feature, that is intended to imply that it may have that feature but not that such examples are limited to those that include that feature.
In describing and claiming the present invention, the following terminology will be used in accordance with the definitions set out below.
“Tri-functional core” refers to phosphorus oxychloride or its derivatives as the starting material where one of its reactive sites can be used to install a linking group for ultimate conjugation with a bioactive substance and the other two sites used for multiplication of side chains. The tri-functional core forms phosphoramide, or phosphorodiamidate or its analogs as central scaffold for assembly of transporter composition containing a linking group for conjugation with a bioactive substance and multiple side chains each containing a terminal guanidinium group or a primary amino group which is converted to a guanidine moiety.
“Oligoguanidine compound” refers to an oligomer of subunits, each subunit of which contains a chemically tethered guanidine group. A guanidine residue has the general structural characteristics of a guanidine head group, plus a tether of up to 12 methylene groups linking the guanidine moiety to the core of the transporter composition, where the core includes at least one phosphoramide or phosphorodiamidate. Accordingly, in one embodiment of the invention, one component of an oligoguanidine compound has the following sectional formula A:
wherein: m and n are integers of from 2 to 6. In the formula above, the guanidine group is illustrated as being neutral. One of skill in the art will appreciate that the extent to which an oligoguanidine compound is charged will depend on the environment in which it is present (including medium, pH, etc.) and both charged and uncharged forms are contemplated by the present invention.
The core of the oligoguanidine transporter composition is a “tri-functional core (phosphoramide or phosphorodiamidate)” which serves as the scaffold on which the guanidine-containing components are assembled. One site on this tri-functional core is used to install a linker or a linking group for conjugation with bioactive substances. The other two sites on the tri-functional core are used to install the side chains of amino groups in a protected form, which are subsequently deprotected and converted to guanidines, preferably after coupling with bioactive substances. Accordingly, in one embodiment of the invention, the core structure of the delivery composition has the following formula B:
Wherein: m is an integer of from 0 to 10; n is an integer of from 1 to 5. L is a linker or a linking group to conjugate to a bioactive substance. Therefore, merger of Formula A and B represents a whole piece of transporter composition containing oligoguanidine head groups, tri-functional core scaffold and a linker bound to or suitable for binding to a bioactive substance.
As used herein, the term “oligoguanidine compound” refers to an oligomer of subunits, each of which contains a chemically tethered group that is a guanidine or that has been chemically transformed to generate a guanidine group. Transformation to the guanidine group can be done prior to the conjugation with a bioactive substance by using an appropriate starting material (i.e., an oligomer having chemically built-in guanidine in a suitably protected form). Alternately, an oligoguanidine compound can be made at the end of the synthesis by a perguanidinylation step.
A linking moiety “L” has two termini, one that covalently attaches to the transporter composition and one that covalently bonds to a bioactive substance. Examples of such groups include, without limitation, carboxylic acid, carboxylic acid derivatives, alcohols, amines and thiols. For example, one end of a dicarboxylic acid is used in attaching the transporter composition, while the other in attaching a bioactive substance. The cleavable linking moiety is preferable when it is used in vivo. “Cleavable” in this case refers to separation of transporter composition from the bioactive substance. The separation is effected through cleavage of a covalent bond unstable in a biological environment. For example, a linking moiety containing a disulfide bond may be cleaved in the reducing environment within cells in the living organism. Or a linking moiety contains a short section of peptide, which can be cleaved by peptidases or proteases in the living organism. The cleavage releases a free bioactive substance from the transporter composition.
“Delivery” refers to an increase in amount and/or rate of transporting a bioactive substance across a biological barrier. The term is also meant to include altering tissue distribution, localization and release of a bioactive substance or agent.
“Biological barrier” refers to a physiological barrier to the delivery of a bioactive substance to its intended target site. It includes, for example biological membranes.
“Biological membrane” refers to a lipid-containing barrier that separates cells or groups of cells from extracellular space.
“Bioactive substance” refers to a therapeutic compound or a diagnostic agent, as well as lead compounds in a research and development setting. Still further the term is meant to include various probes (e.g., oligonucleotides alone or those having attached imaging agents) and substances effective to alter biological processes within cells.
The term “therapeutic compound” refers, without limitation, to any composition that can be used to the benefit of a mammalian species. A number of such agents cause an observable change in the structure, function or composition of a cell upon uptake by the cell. Observable changes include increased or decreased expression of one or more mRNAs, increased or decreased expression of one or more proteins, phosphorylation of a protein or other cell component, inhibition or activation of an enzyme, inhibition or activation of binding between members of a binding pair, an increased rate of synthesis of a metabolite, increased or decreased cell proliferation and the like. Other agents exert therapeutic effects when present in a tissue, even in the absence of cellular entry.
The term “diagnostic agent” refers to both diagnostic imaging agents and contrast agents. The following are non-limiting examples of diagnostic agents: radio-labeled substances such as ⁹⁹mTc glucoheptonate; substances used in magnetic resonance imaging such as gadolinium doped chelation agents (e.g., Gd-DTPA); metals bound to chelating agents such as Eu, Lu, Pr, Gd, Tc99m, Ga⁶⁷, In¹¹¹, Y⁹⁰, Cu⁶⁷and Co⁵⁷; and, proteins such as □-galactosidase, green fluorescent protein and luciferase. Other diagnostic agents include molecular sensors.
The term “macromolecule” refers to large molecules (MW greater than 1000 daltons) of biological or synthetic origin, exemplified by, but not limited to, peptides, proteins, oligonucleotides, polynucleotides and analogs thereof, such as peptide nucleic acids and morpholinos.
“Small organic molecule” refers to a carbon-containing agent having a molecular weight of less than or equal to 1000 daltons.

Abbreviations:

In describing and claiming the present invention, the following abbreviations will be used in accordance with the definitions set out below.

ALT Alanine aminotransferase
AST Aspartate aminotransferase
BNPC Bis(4-nitrophenyl)carbonate
DCE 1,2-dichloroethane
DCM dichloromethane
DIEA N,N-diisopropylethylamine
DMI 1,3-dimethyl-2-imidazolidinone
EDCI 1-ethyl-3-[3-(dimethylamino)propyl]carbodiimide hydrochloride
EP Endo Porter, a peptide delivery composition (Gene Tools, LLC)
EtOAc ethyl acetate
HMDS hexamethyldisilazane
HOBT 1-hydroxybenzotriazole hydrate
L linking group
MeCN acetonitrile
MeOH methanol
MW molecular weight
PG protecting group
RT room temperature
TBME t-butyl methyl ether
TEA triethylamine
TFA trifluoroacetic acid
TFC tri-functional core
TFE 2,2,2-trifluoroethanol
THF tetrahydrofuran
TLC thin layer chromatography
Tr trityl
VM Vivo-Morpholino commonly referred to a conjugate of transporter composition of this invention and a morpholino oligo.

The present invention relates to the finding that guanidine residues provide an enhanced transport of drugs and other agents across biological membranes when the residues are part of an oligoguanidine that provides suitable assembly of the guanidines. This is in contrast to the previously described polymers of, for example, arginine, in which the guanidine moieties are present on essentially all subunits of the linear transport polymer. This is also different from the previously described dendrimers of guanidines, in that the guanidine moieties in the present invention are assembled on a tri-functional core scaffold. Thus, the transporter oligomers of the present invention can be viewed in one group of embodiments as polymers in which guanidine residues are present, but spaced by dendrimeric branches such that each guanidine moiety is in the terminal head group of side chains. Synthetically, the side chains can be selected to enhance the freedom of the arm length and adjust the lipophilicity of the transporter oligomer. Furthermore, the central amino group can provide a site for attachment to a linking group which can conjugate with bioactive substances. More importantly, guanidine moieties are prepared from their amine precursors, which are transformed by a single step perguanidinylation. This process takes the advantage of avoiding using the expensive reagent as compared with the prior art which involves use of costly reagents for conversion and protection of guanidines. The whole assembly of the transporter composition and its joining to the bioactive compound was designed in a concise manner which can be implemented simply and cost-effectively.

III. Transporter Composition—Bioactive Substance Conjugate

As noted above, the present invention provides compositions and methods that enhance the transport of bioactive substances across biological membranes. The compositions are represented by the structures containing a tri-functional core as scaffold, oligoguanidine as head groups of each side chains and bioactive substances attached to a linking group. Accordingly, the invention also includes the oligoguanidine compounds described herein that are chemically tethered to a bioactive substance (which includes therapeutic agents and prodrugs thereof).
The oligoguanidine compounds can be tethered to the therapeutic agent in a variety of different ways. The therapeutic agents can be linked to a transporter composition of the invention in numerous ways, including a direct bond or by means of a linking moiety. In particular, carbamate, amide, ester, thioether, disulfide, and hydrazone linkages are generally easy to form and suitable for most applications. In addition, various functional groups (e.g., hydroxyl, amino, halogen, etc.) can be used to attach the therapeutic agent to the transporter composition. For those therapeutic agents that are inactive until the attached transporter composition is released, the linker is preferably a readily cleavable linker, meaning that it is susceptible to enzymatic or solvent-mediated cleavage in vivo. For this purpose, linkers containing carboxylic acid esters and disulfide bonds are preferred, where the former groups are hydrolyzed enzymatically or chemically, and the latter are severed by disulfide exchange, e.g., in the presence of glutathione.
Therapeutic agents that benefit from the transporter composition of the invention include both small organic molecules and macromolecules (e.g., nucleic acids, oligonucleotides and the analogs thereof. Morpholinos and peptide nucleic acids, polynucleotides, peptides, polypeptides, and proteins). Exemplary therapeutic agents include local and systemic anti-cancer agents, antibiotics, antisense drugs, protease inhibitors, and so forth. In addition, there are numerous releasable linkers that can be used with the transporter composition of the invention, which can be cleaved by phosphatases, proteases, esterases, redox compounds, photochemical agents, nucleophilic agents, acidic compounds, and so forth. Release of the therapeutic agent can be the result of either enzymatic or non-enzymatic action.
Turning next to the bioactive substance, the present invention finds broad application to essentially any therapeutic or diagnostic agent. Examples of therapeutic S compounds include, without limitation, the following: oligonucleotides and polynucleotides formed of DNA and RNA; oligonucleotide analogs such as phosphonates (e.g., methyl phosphonates), phosphoramidates, thiophosphates, locked nucleic acids (LNA), uncharged Morpholinos and peptide nucleic acids (PNAs) or their structural variations containing positive or negative charges; proteins such as kinase C, RAF-1, p21Ras, NF-κB and C-JUN; and, polysaccharides and polysaccharide analogs. Diagnostic agents include both diagnostic imaging agents and contrast agents. The following are non-limiting examples of diagnostic agents: radio-labeled substances such as ⁹⁹mTc glucoheptonate; substances used in magnetic resonance imaging such as gadolinium doped chelation agents (e.g., Gd-DTPA); metals bound to chelating agents such as Eu, Lu, Pr, Gd, Tc⁹⁹m, Ga⁶⁷, In¹¹¹, Y⁹⁰, Cu⁶⁷and Co⁵⁷; and proteins such as □-galactosidase, green fluorescent protein and luciferase. Still other useful agents include dyes such as, for example, fluorescein.
In certain embodiments, the transporter composition is attached to the bioactive substance through a linking moiety. Such a linking moiety has two termini, one that covalently bonds to the transporter composition and one that covalently bonds to the bioactive substance. The termini each contain a functional group that serves as a facile point of attachment. Examples of such groups include, without limitation, carboxylic acid, carboxylic acid derivatives, alcohols, amines and thiols. For example, suberic acid is a linking moiety having a carboxylic acid at each terminus. One terminus is used in attaching the transporter composition, while the other in attaching the bioactive substance.
The linking moiety is preferably cleaved in vivo. “Cleaved” in this case refers to separation of a linking moiety from the bioactive substance. The separation is effected through cleavage of a covalent bond. For instance, a linking moiety containing a disulfide bond may be cleaved in the reducing environment in the cells of a living organism, resulting in the separation of transporter composition from the bioactive substance. Or a linking moiety contains a short section of peptide, which can be cleaved by proteases in the living organism. The cleavage releases a free bioactive substance from the transporter composition.

IV. Synthesis of Transporter Moieties and Compositions

A. General Reaction
FIG. 1 provides an illustration for the synthesis of a dendrimeric octaguanidine beginning with monoprotected piperazine 1. The protected piperazine 1 reacts with phosphorus oxychloride to give monosubstituted dichloro derivative. The dichloride is then treated with diethanolamine to give tetraalcohol 4. The hydroxyl groups are activated with a suitable activating reagent to provide tetracarbonate 5. The tetracarbonate 5 is treated with a secondary amine 2 obtained from selective protection for primary amines of a triamine to tetracarbamate 6 containing octaamine in a protected form. The secondary amine of piperazine 7 is regenerated by deprotection, which reacts with an activated linker 3 to give the transporter moiety 8 with an active functional moiety at one terminus. This active functional group 8 couples with a bioactive substance to give a conjugate 9. The final removal of protecting groups to give octaamine 10 and perguanidinylation thereof fulfills the whole entity assembly for a transporter-enabled bioactive substance 11. More detail below is provided for perguanidinylation.
FIG. 2 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing four side chains each with a protected primary amine. The monosubstituted dichloro derivative is treated with a secondary amine 2 obtained from selective protection for primary amines of a triamine to give an entity containing phosphoramide as scaffold and four primary amines in a protected form 13.
FIG. 3 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing six side chains each with a protected primary amine. The monosubstituted dichloro derivative is treated with aminotrialcohol to give hexa-alcohol intermediate 14 which is activated to form the corresponding carbonate 15. The carbonate 15 is then treated with suitably protected amines to give hexa-primary amines in a protected form 16.
FIG. 4 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing twelve side chains with a protected primary amine. By using the same reactive carbonate intermediate 15 as shown in FIG. 3, and introducing a secondary amine 2 obtained from selective protection for primary amines of a triamine, a dozen of side chains each with a protected primary amine are furnished to afford compound 17.
FIG. 5 illustrates a synthetic scheme of assembling a protected central nitrogen functional group and a phosphoramide scaffold containing sixteen side chains with a protected primary amine. By using the same reactive carbonate intermediate 5 as shown in FIG. 1 b, treatment of diethanolamine gives octa-alcohol 18. Activation of the alcohol 18 to the corresponding carbonate intermediate 19, followed by introduction of a secondary amine 2 obtained from selective protection for primary amines of a triamine, gives a phosphoramide scaffold 20 containing sixteen side chains each with a protected primary amine.
FIG. 6 illustrates a sequence for construction of a rigid core scaffold of octaamines in a protected form. The monosubstituted dichloro derivative is treated with piperazine to give di-secondary amine 21. Disubstituted monochlo derivative 22, obtained from treatment of phosphorus oxychloride with the secondary amine 2 by a controllable manner, reacts with the di-secondary amine 21, resulting in a fully protected form of octaamine 23.
FIG. 7 illustrates a sequence for construction of a flexible scaffold of octaamines in a protected form. Reaction of monoprotected alcohol or amine 24 with phosphorus oxychloride gives monosubstituted dichloro derivative 25, which is further exposed with two equivalents of secondary amine to give trisubstituted phosphoramide or phosphorodiamidate or its analogs 26. Removal of the trityl group generates a primary amine 27, which is again treated with the monosubstituted dichloro derivative 25 to yield a fully protected form of octaamine 28.
As can be seen from FIGS. 1 to 7, use of tri-functional core (phosphoramide or phosphorodiamidate or its analogs) as a scaffold can assemble oligoamines in an efficient manner. All these amino groups are orthogonally protected (trityl vs. trifluoroacetyl). Removal of trityl group provides a site for installing a linking group which can be used for conjugation with bioactive substance. FIG. 8 illustrates a general scheme following FIGS. 2, 3, 4, 5, 6 and 7 for subsequent manipulation. The linking site of 30, generated after deprotection of 29, is coupled with a linking group to afford 31. The active end of the linking group of 31 is connected with a bioactive substance to give a conjugate 32. The oligoamine 33, generated from removing the protecting groups of 32, undergoes guanidinylation to give 34, an oligoguanidine conjugated with bioactive substance.
FIGS. 1 to 7 also show the same methodology which requires a deprotection and perguanidinylation process after conjugation with bioactive substance. FIG. 9 illustrates a sequence where guanidine groups are built-in before the transporter composition is coupled with bioactive substance. This is very useful for those bioactive substances which are vulnerable to the conditions used for perguanidinylation. The selective protection of primary amine 35 with trifluoroacetyl group gives free secondary amine 36 which is orthogonally protected with trityl group to give intermediate 37. The primary amine 38 re-generated by deprotection can be transformed to guanidine 40 in a protected form. Removal of the trityl group gives the secondary amine 41 which reacts with the carbonate intermediate 5 to furnish the octaguanidine 42 in a protected form.
Although the transformation described in FIG. 9 is useful for some bioactive substances which are vulnerable to the conditions used for perguanidinylation, one of skill in the art will readily understand that this route is rather lengthy whereas post-coupling perguanidinylation is the cost-effective way. As a matter of fact, in one embodiment of the invention, the deprotection and perguanidinylation is carried out in a single reaction vessel without intermediate purification, providing a practical process for efficient streamlined production of conjugate containing transporter composition and bioactive substance.
B. Specific Embodiments of the Methods of the Invention
Accordingly, one embodiment of the invention is a method for the preparation of an oligoguanidine compound, comprising contacting an oligomer having chemically tethered amines, at least a portion of which are protected, with a protecting group removal agent and a guanidinylation reagent to convert each of said protected amines to a guanidinyl group, to produce an oligoguanidine compound. More specifically, the method may comprise the steps of (a) assembling a dendrimeric structure using a tri-functional core to install a plurality of side chains each containing a chemically tethered amine, (b) contacting one amino group which is orthogonally protected to the amino groups at the end of each side chain with a linking group having reactive functional entities on each end. The linking group having the remaining reactive functional entity is conjugated with a bioactive substance, (c) contacting an oligomer having a plurality of chemically tethered amines, wherein a portion of the tethered amines have attached protecting groups, with a protecting group removal agent to remove the protecting groups to produce an oligomer having a plurality of chemically tethered amines; and (d) contacting the resulting oligomer with a guanidinylation reagent to convert each of the chemically tethered amines to a guanidinyl group to produce an oligoguanidine compound.
In some embodiments, the oligomer having chemically tethered amines will be isolated and purified using methods such as ion exchange chromatography, HPLC, column chromatography and the like. This oligomer (tethered amine) compound can be isolated as a salt or in neutral form. However, in a preferred embodiment, the oligomer compound having chemically tethered amines is not isolated, but is carried on directly to step (d). In certain embodiments, steps (c) and (d) are carried out in the same reaction vessel. Therefore, an oligomer compound having protecting groups on each of the amines can be treated with a protecting group removal agent and subsequently a guanidinylation reagent to provide the oligoguanidine compound in a single vessel. In one particularly preferred embodiment, an oligomer having trifluoroacetyl protecting groups on each of the □-amines is contacted with a protecting group removal agent, preferably aqueous ammonia solution, and afterwards with a guanidinylation reagent, preferably O-methylisourea hydrochloride.
In other embodiments, the oligomer having chemically tethered amines is a dendrimeric scaffold with a tri-functional core as the center piece. In another embodiment, the branching moiety from the tri-functional core is dialcoholamine (wherein “dialcoholamine” refers to those compounds having hydroxyl group at each end of the side chains and the side chains containing multiple methylene and other heteroatom such as O, S, B and the like.) In one particularly preferred embodiment, diethanolamnine is used for multiplication of the side chains. The nitrogen atom from the dialcoholamine connects to tri-functional core and the hydroxyl groups from the alcohols develop further for a plurality of side chains. The multiplication of side chains is preferably enabled by formation of carbonate intermediate, which is in turn preferably connected with a secondary amine of bis(hexamethylene)triamine wherein both primary amines are protected with preferably trifluoroacetyl groups.
Another embodiment of the invention is a method for the preparation of an oligoguanidine compound from a suitably protected oligoamine, comprising the steps of: (a) connecting two dialcoholamine to monosubstituted dichloro derivative to produce a tetraalcohol; (b) activating each of the hydroxyl group of the tetraalcohol to form carbonate intermediate; (c) treating each of the carbonate groups with dialcoholamine to generate an octahydroxyl compound and thereafter activating each of the hydroxyl group of the octahydroxyl to octacarbonate; (d) subjecting the carbonate compound with a secondary amine of bis(hexamethylene)triamine wherein both primary amines are protected with preferably trifluoroacetyl groups to give oligoamines in a protected form. When step (c) is done once, an oligomer is obtained which has sixteen side chains each containing a primary amine in a protected form. In one particularly preferred embodiment, step (c) is skipped and step (d) is conducted directly after step (b) to give an oligomer having eight side chains each containing a primary amine in a protected form.
C. Exemplary Method of the Invention
Perguanidinylation has been described for the preparation of cationic oligonucleotides (Deglane, G. et al. Chem Bio Chem 7:684-692 (2006)). Perguanidinylation has now been found to have utility in the preparation of oligoguanidine transporter composition as described herein.
For example, a suitable synthesis of the guanidine octamer was desired due to the utility of this compound as a membrane transport reagent. In view of the perguanidinylation studies noted above, octaguanidine could in principle be prepared from an octaamine through a late stage perguanidinylation reaction. The primary amino groups can be transformed to guanidines by final perguanidination, a step offering additional advantages of avoiding the use of expensive protecting groups for the guanidinium subunit if it is pre-formed otherwise.
Selective protection of a triamine having a secondary amine in the middle or close to the middle of the chain and two primary amines on each end of the chains can be achieved to give the free secondary amine and the protected primary amines. This strategy can make use of a triamine for connecting the secondary amine to a core scaffold and for converting two primary amines to a couple of guanidines at the final stage. In order to manipulate the chemistry in an orthogonally protected manner, base-labile trifluoroacetamide protecting group is incorporated on the primary amine for the ultimate conversion to guanidine after deprotection, and acid-labile trityl protecting group is installed on the amine for the linkage with a leash connecting with a bioactive substance. The requisite mono-tritylated piperazine used for starting the construction of a tri-functional core scaffold is prepared by exposing trityl chloride with excess amount of piperazine. After treatment of tritylpiperazine with phosphorus oxychloride, diethanolamine is used to doubling the functional site. The tetraalcohol thus formed is activated to give tetracarbonate by using bis(4-nitrophenyl)carbonate. Reaction of the tetracarbonate with the secondary amine of a triamine having the primary amines protected with trifluoroacetyl group gives rise to the octaamine in a protected form. Removal of the trityl group is achieved by acid treatment. The free amine thus generated is exposed to a large excess of linking reagent, suberic di(4-nitrophneyl)ester, resulting in the connection of the octaamine with the linking moiety and yielding an active ester for subsequent conjugation with a bioactive substance.
After conjugation of the octaamine with a bioactive substance through a linking moiety, the final deprotection and perguanidinylation can be accomplished via a single vessel operation. Since ammonia has been utilized to effect the deprotection of trifluoroacetamides, and also as one of the reagents in the guanidinylation of amines, a single vessel operation was investigated. Thus, treatment of the octaamine derivative with concentrated ammonia gives a conjugate of octaamine and the bioactive substance. Without purification, the mixture is treated further with O-methylisourea hydrochloride with additional 18% ammonia solution to give octaguanidine coupled with a bioactive substance. The conversion of octaamine to octaguanidine by using this guanidinylation system is virtually quantitative and the purification can be carried out by using Oasis HLB LP extraction cartridge (Waters Corporation, Milford, Mass., US).
Significantly, eight trifluoroacetamides were removed to eight primary amines and subsequently converted to eight guanidines under mild conditions in quantitative yield. And more significantly, the ammonolytic deprotection, and subsequent perguanidinylation carried out in a single reaction vessel, without intermediate purification, enables the practical streamline production of conjugate containing bioactive substance and transporter composition. This process improvement constitutes a very valuable and cost-effective advantage over prior art production procedures.
D. Protecting Groups and Protecting Removal Agents
The precise conditions and reagents or agents used in the process will depend on the nature of the protecting groups to be kept or removed. Protecting groups selected for the protection of the chemically tethered amine groups on the side chains are generally those groups that can be distinguished from the other protecting groups in other portions of the molecule (e.g., the trityl group protecting the amino group for linking the leash with a bioactive substance). Such protecting groups are often referred to as “orthogonal”. Generally, the reagents and conditions can be employed by following the guidelines in such protecting group treatises as Wuts and Greene, Protective Groups in Organic Synthesis, 4th ed., John Wiley & Sons, New York N.Y. (2007), and the references cited therein.
As noted above, the method of the invention involves contacting an oligomer having a plurality of chemically tethered amines, with a protecting group removal agent to remove the protecting groups.
In one embodiment of the invention, trifluoroacetyl group is selected for the protecting groups on each of the chemically tethered amines for four critical reasons: (a) methyl or ethyl trifluoroacetate is a mild and selective reagent to protect primary amines in the presence of secondary amine, therefore, it is useful to keep the secondary amine intact while protecting the primary amine in a polyamine (a triamine in this particular case) so that the secondary amine can be used to connect to reactive functional groups in the scaffold; (b) a different amino group is used for linking the leash for conjugation with bioactive substance. Acid labile trityl group is selected for this amino group since trifluoroacetyl group is labile towards basic conditions but stable towards acidic conditions; (c) trifluoroacetyl protecting groups on the amines can be cleaved by ammonolysis, a condition also used for removing protecting groups in some bioactive substances. Therefore, exposure of ammonia can remove protecting groups both in the bioactive substance and in the oligoamine moieties. This strategy proves very useful in the cases where for example, coupling of the precursor transporter composition, i.e. oligoamine in a protected form, is carried out with Morpholino antisense oligo while it is still on the synthesis resin and subsequent ammonolytic treatment not only removes all the protecting groups on the Morpholino oligo and the oligoamine moiety, but also cleave the conjugate of precursor transporter composition and Morpholino from the synthesis resin. This advantage of convenience being able to cleave the conjugate from the synthesis resin and remove the protecting groups for subsequent guanidinylation paves the way for simple operation and economic production. (d) ammonia is also a reagent for converting amino group to guanidine in the presence of a guanidinylation agent, O-methylisourea hydrochloride. Therefore, without any purification, the ammonia used for deprotection of protecting groups in oligoamine can be carried over for the subsequent guanidinylation. By choosing the selected protecting groups and the selected protecting group removal agent, the whole production process for a conjugate containing a bioactive substance and transporter composition is significantly simplified and its cost is considerably reduced in comparison to prior art methods.
E. Guanidinylation Reagents
As noted above, the method of the invention involves contacting the oligomer having a plurality of chemically tethered amines, with a guanidinylation reagent to convert each of the chemically tethered amines to a guanidinyl group to produce an oligoguanidine compound.
Any guanidinylation reagent useful for converting an amino group to a guanidinyl group can be used in the present invention. Preferably, the guanidinylation reagent is a salt of O-methylisourea. Most preferably, the guanidinylation reagent is O-methylisourea hydrochloride. Other suitable guanidinylation reagents are described in Bematowicz et al., J. Org. Chem. 57: 2497-2502 (1992).

EXAMPLES

The practice of the present invention will employ, unless otherwise indicated, conventional techniques of synthetic organic chemistry, biochemistry and the like, which are within the skill of the art. Such techniques are explained fully in the literature. See, for example, Kirk-Othmer's Encyclopedia of Chemical Technology; and House's Modern Synthetic Reactions.
The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how to make and use the compositions/compound/methods of the invention. Efforts have been made to ensure accuracy with respect to numbers (e.g., amounts, temperature, etc.) but some experimental error and deviations should, of course, be allowed for. Unless indicated otherwise, parts are parts by weight, temperature is degrees centigrade and pressure is at or near atmospheric. All components were obtained commercially unless otherwise indicated.

Example 1

Synthesis of bis(diethanolamino)-4-tritylpiperazinophosphoramide (4) Phosphorus oxychloride (1.84 g, 12 mmol) was dissolved in a solution of DCM (10 ml) containing DIEA (8.8 ml). N-Tritylpiperazine (1) (3.28 g, 10 mmol) dissolved in DCM (10 ml) was added to the mixture cooled in an ice bath. The mixture was kept at 0° C. for 30 min. The volatile materials were removed by evaporation. Diethanolamine (12 ml) was added to the mixture. The mixture was heated at 70° C. for 16 hours. The mixture was dissolved in EtOAc (200 ml) and washed with sodium bicarbonate (150 ml) and water (200 ml×2) and dried over sodium sulfate. After removal of the solvent, a white solid was obtained (5.1 g, 88%).
It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference for all purposes.

Claims

1. A method for preparing a precursor transporter composition containing a tri-functional core scaffold for dendrimeric assembly, comprising:

(a) using two reactive sites of phosphorus oxychloride to prepare an oligomer having 4, 6, 8, 12, or 16 side chains with terminal primary amino groups in a chemically protected form; and,

(b) using a third reactive site of phosphorus oxychloride to install a linker for covalent coupling with a bioactive substance.

2. The method of claim 1, wherein the protecting groups on each of the chemically protected amines on the side chains are trifluoroacetyl groups.

3. The method of claim 1, wherein two sites of the tri-functional core are used for multiplying the number of side chains.

4. The method of claim 1, wherein one site of the tri-functional core is used for a linking group to conjugation with a bioactive substance.

5. A method for preparing a conjugate containing a tri-functional core with an oligoguanidine transporter composition and a bioactive substance, comprising:

(a) contacting a precursor transporter composition having a reactive linker with the bioactive substance still on its synthesis resin under conditions effective for covalent coupling;

(b) contacting the conjugate containing the precursor transporter composition and the bioactive substance with a protecting group removal agent to remove said protecting groups to generate free amino groups on the side chains; and,

(c) contacting the conjugate containing the oligomer having multiple free primary amines on the side chains with a guanidinylation reagent to convert each of said free primary amines to a guanidinyl group to produce an oligoguanidine compound.

6. The method of claim 5, wherein the precursor transporter composition has a tri-functional core scaffold.

7. The method of claim 5, wherein both removal of protecting groups and guanidinylation are conducted in an ammonia medium and the guanidinylation is carried out subsequent to the removal of protecting groups without intermediate purification.

8. The method of claim 5, wherein the guanidinylation reagent is a salt of □-methylisourea.

9. The method of claim 5, wherein the linkage between the transporter composition and a bioactive substance is a permanent connection under biological conditions.

10. The method of claim 5, wherein the linkage between the transporter composition and the bioactive substance is a cleavable connection under biological conditions.

11. The method of claim 5, wherein the terminal side chains are derived from a triamine.

12. The method of claim 11, wherein the triamine has two primary amines and one secondary amine.

13. The method of claim 12, wherein the nitrogen atoms of the triamine can be symmetric.

14. The method of claim 12, wherein the nitrogen atoms of the triamine can be non-symmetric.

15. The method of claim 11, wherein the triamine is selectively protected for its two primary amines and the unprotected secondary amine is used for contacting.

16. The method of claim 15, wherein the protecting group for primary amine is trifluoroacetyl.

17. The method of claim 5, wherein the transporter composition has at least four guanidine residues.

18. The method of claim 17, wherein the transporter composition has at least eight guanidine residues.

19. The method of claim 5, wherein the conjugate comprises the transporter composition chemically connected to the bioactive substance.

20. The composition of claim 19, wherein the transporter composition contains 4, 6, 8, 12, 16 guanidine head groups assembled from the tri-functional core as a dendrimeric scaffold.

21. The composition of claim 20, wherein the transporter composition has the following structure:

22. The composition of claim 20, wherein the transporter composition is chemically linked with a bioactive substance.

23. The composition of claim 22, wherein the bioactive substance is a Morpholino antisense oligo.

24. The composition of claim 23, wherein the morpholino antisense agent is effective to modify splicing of a selected pre-mRNA.

25. The composition of claim 23, wherein the morpholino antisense agent is effective to block translation of a selected mRNA.

26. The composition of claim 22, wherein the bioactive substance is a therapeutic agent for use in animals.

27. The composition of claim 26, wherein the animal is a human.

28. The use of claim 26, wherein a therapeutic agent is administered intravenously.

29. The use of claim 26, wherein a therapeutic agent is administered intraperitoneally.

30. The composition of claim 1, wherein the tri-functional core is phosphoramide.

31. The composition of claim 1, wherein the tri-functional core is phosphorodiamidate.