TWI537387B - Napier grass and uses thereof - Google Patents
Napier grass and uses thereof Download PDFInfo
- Publication number
- TWI537387B TWI537387B TW100113571A TW100113571A TWI537387B TW I537387 B TWI537387 B TW I537387B TW 100113571 A TW100113571 A TW 100113571A TW 100113571 A TW100113571 A TW 100113571A TW I537387 B TWI537387 B TW I537387B
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- Taiwan
- Prior art keywords
- composition
- medium
- grass
- cellulase
- cellulolytic
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- 244000025254 Cannabis sativa Species 0.000 claims description 44
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Landscapes
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Description
本申請案係關於用於培養纖維素分解微生物以供產生纖維素酶的培養基、組合物及方法。The present application relates to culture media, compositions and methods for culturing cellulolytic microorganisms for the production of cellulases.
在過去的數十年中,對纖維素酶系統的大部分研究主要著重於用於產生富能量(energy-rich)物質(例如乙醇、氫氣及甲烷)的纖維素分解生質轉化。因此,已研發許多相關技術(Sheehan及Himmel,1999)。此等生物技術的關鍵在於達成微生物及酶促纖維素水解之實用目標(Lynd等人,2002)。然而,目前可用於將纖維素轉化成生物燃料之生物技術方法儘管較有前景卻相對缺乏深入研究。此外,使用天然形成之木質纖維素(源自木材、草、林業廢棄物、廢紙、城市廢棄物及農業殘餘物,例如玉米秣草及禾桿)生產纖維素酶的趨勢在世界範圍已顯著增加。在所有原料中,由於經營成本極低而使農業生質(由超過50%纖維素及半纖維素組成)成為生產微生物酶的極佳碳源。降低微生物酶生產成本已成為當下生物燃料研發與生產的重要研究目標。In the past few decades, much of the research on cellulase systems has focused primarily on cellulolytic biomass conversion for the production of energy-rich materials such as ethanol, hydrogen and methane. Therefore, many related technologies have been developed (Sheehan and Himmel, 1999). The key to such biotechnology is to achieve the practical goal of microbial and enzymatic cellulose hydrolysis (Lynd et al., 2002). However, biotechnological methods currently available for the conversion of cellulose to biofuels are relatively promising but relatively lacking in-depth research. In addition, the use of naturally occurring lignocellulose (from wood, grass, forestry waste, waste paper, municipal waste and agricultural residues such as corn stalks and straws) to produce cellulase trends has become significant worldwide. increase. Among all the raw materials, agricultural biomass (consisting of more than 50% cellulose and hemicellulose) is an excellent carbon source for the production of microbial enzymes due to extremely low operating costs. Reducing the cost of microbial enzyme production has become an important research target for the development and production of biofuels.
由於纖維素酶在工業製程(諸如動物飼料、澱粉加工、製曲及釀酒、穀物酒精醱酵、果實及蔬菜加工、紙漿造紙業及紡織業)中的廣泛應用潛力(Bhat,2000),大量研究已著重於纖維素酶。許多產生各種纖維素分解酶之微生物已研究了數十年(Lynd等人,2002)。用於增加纖維素酶產量的培養方法已被廣泛報導,包括浸入式及固態醱酵(Grajek,1987)、不同類型及濃度的受質(Pavarina及Durrant,2002)、利用碳源及氮源進行調節(Lockington等人,2002)、進行共同培養來產生纖維素酶(Wang等人,2006)及菌株改良(Adsul等人,2007)。基於考慮到需要使用纖維素酶進行纖維素基物質之糖化,因此篩選具有高纖維素酶活性、不會在水解產物中留下殘餘物(例如纖維二糖)且具有熱-pH穩定性酶之微生物將為有益的。Due to the wide application potential of cellulase in industrial processes such as animal feed, starch processing, koji and wine making, grain alcohol fermentation, fruit and vegetable processing, pulp and paper, and textiles (Bhat, 2000), extensive research Focus on cellulases. Many microorganisms that produce various cellulolytic enzymes have been studied for decades (Lynd et al., 2002). Culture methods for increasing cellulase production have been widely reported, including immersion and solid fermentation (Grajek, 1987), different types and concentrations of substrates (Pavarina and Durrant, 2002), using carbon and nitrogen sources. Modulation (Lockington et al., 2002), co-cultivation to produce cellulase (Wang et al., 2006) and strain improvement (Adsul et al., 2007). Based on the consideration of the need to use cellulase for saccharification of cellulose-based materials, screening for high cellulase activity, leaving no residue in the hydrolysate (eg cellobiose) and having a thermo-pH stability enzyme Microorganisms will be beneficial.
在具有適用性、高活性及高生產率之纖維素酶的研發及生產中成本問題為關鍵。製備培養基之化學物質為生長供產生纖維素酶的纖維素分解微生物之主要花費。需要一種成本有效的培養基。The cost issue is critical in the development and production of cellulases with applicability, high activity and high productivity. The chemical substance in which the medium is prepared is a major expense for growing cellulolytic microorganisms for producing cellulase. There is a need for a cost effective medium.
本發明係關於一種成本效應培養基及一種生長纖維素分解微生物以供產生纖維素酶的方法。The present invention relates to a cost effective medium and a method of growing a cellulose decomposing microorganism for producing a cellulase.
因此,本發明之一態樣之特徵在於含有狼尾(Napier;NP)草(象草(Pennisetum purpureum))之培養基。在一實例中,培養基包含約0.1%至5%(w/v)NP草碎片。培養基可含有N源。在一實例中,培養基係經滅菌。在另一實例中,培養基進一步含有抗生素。Thus, one aspect of the invention features a medium containing a wolftail (Napier; NP) grass ( Pennisetum purpureum ). In one example, the medium comprises from about 0.1% to 5% (w/v) NP grass debris. The medium may contain an N source. In one example, the medium is sterilized. In another example, the medium further contains an antibiotic.
在第二態樣中,本發明之特徵在於一種培養纖維素分解微生物的方法。該方法包括以下步驟:獲得上述培養基;及在該培養基中於允許纖維素分解微生物之細胞生長的條件下培養該細胞。纖維素分解微生物之實例包括但不限於鐮刀菌屬(Fusarium spp.)、曲黴菌屬(Aspergillus spp.)及脈孢菌屬(Neurospora spp.)。所用較佳纖維素分解微生物可為真菌,諸如黑曲黴菌(Aspergillus niger)、菌膜假絲酵母(Candida pelliculosa))、脆壁克魯維酵母(Kluyveromyces fragilis)、黃孢原毛平革菌(Phanerochaete chrysosporium)、裂褶菌(Schizopphyllum commune)及里氏木黴(Trichoderma reesei);細菌,諸如農桿菌(Agrobacterium)ATCC 21400、解澱粉芽孢桿菌(Bacillus amyloliquefaciens)、環狀桿菌(Bacillus circulans)、枯草桿菌(Bacillus subtilis)、產琥珀酸擬桿菌(Bacteroides succinogenes)、糞肥纖維單胞菌(Cellumonas fimi)、潮濕纖維單胞菌(Cellulomonas uda)、熱纖梭菌(Clostridium thermocellum)、非脫羧埃希菌(Escherichia adecarboxylata)、菊歐文氏菌(Erwinia chrysantemi)、雙孢小雙孢菌(Microbispora bispora)及高溫單孢菌YX(Thermonospora YX);或獲自諸如黃胸散白蟻(Reticulitermes flavipes)、食木船蛆(Xylophaga)、澳洲土壟家白蟻(Coptotermes lacteus)、黑胸象白蟻(Nasutitermes walkeri)、白蟻(Leucotermes speratus)(散白蟻屬(Reticulitermes))、蓋罩大蝸牛(Helix pomatia)、隱尾蠊(Cryptocercus punctulates)、食木蟑螂(Panesthia cribrata)、桑粒肩天牛(Calolampra elegans)及穴居蟑螂(Geoscapheus dilatatus)之動物的其他微生物。In a second aspect, the invention features a method of culturing a cellulolytic microorganism. The method comprises the steps of: obtaining the above medium; and culturing the cells in the medium under conditions that allow growth of cells of the cellulolytic microorganism. Examples of cellulolytic microorganisms include, but are not limited to, Fusarium spp., Aspergillus spp., and Neurospora spp. Preferred cellulolytic microorganisms to be used may be fungi, such as Aspergillus niger , Candida pelliculosa , Kluyveromyces fragilis , Phanerochaete. Chrysosporium), Schizophyllum (Schizopphyllum commune) and Trichoderma reesei (Trichoderma reesei); bacteria, such as Agrobacterium (Agrobacterium) ATCC 21400, Bacillus amyloliquefaciens (Bacillus amyloliquefaciens), cyclic Bacillus (Bacillus circulans), Bacillus subtilis ( Bacillus subtilis ), Bacteroides succinogenes , Cellumonas fimi , Cellulomonas uda , Clostridium thermocellum , non-decarboxyl (Escherichia coli) Escherichia adecarboxylata), Erwinia chrysanthemi (Erwinia chrysantemi), Agaricus small Agaricus fungus (Microbispora bispora) and high temperature sp YX (Thermonospora YX); or obtained from sources such as Reticulitermes (Reticulitermes flavipes), food wooden maggots ( Xylophaga ), Australian ridged termites ( Coptotermes lacteus ), black breasts Termites ( Nasutitermes walkeri ), termites ( Leucotermes speratus ) ( Reticulitermes ), snails ( Helix pomatia ), Cryptocercus punctulates , Panesthia cribrata , mulberry Other microbes of animals of Calolampra elegans and Geoscapheus dilatatus .
在第三態樣中,本發明之特徵在於一種產生纖維素酶之方法。該方法包括以下步驟:獲得上述培養基且在該培養基中於允許表現纖維素酶之條件下培養含有編碼纖維素酶之核酸的纖維素分解微生物(諸如選自鐮刀菌屬、曲黴菌屬及脈孢菌屬之真菌)之細胞;及自所培養之細胞或培養基純化纖維素酶。In a third aspect, the invention features a method of producing a cellulase. The method comprises the steps of: obtaining the above medium and cultivating a cellulolytic microorganism containing a nucleic acid encoding a cellulase (such as selected from the group consisting of Fusarium, Aspergillus, and Neurospora) in the medium under conditions permitting expression of cellulase. a cell of a fungus of the genus; and a cellulase purified from the cultured cells or culture medium.
在第四態樣中,本發明之特徵在於一種具有上述培養基及纖維素分解微生物(諸如選自鐮刀菌屬、曲黴菌屬及脈孢菌屬之真菌)之細胞的組合物。上述方法及組合物可用於自木質纖維素物質產生可醱酵糖及能量。In a fourth aspect, the invention features a composition having the above-described medium and cells of a cellulolytic microorganism such as a fungus selected from the group consisting of Fusarium, Aspergillus, and Neurospora. The above methods and compositions are useful for producing saccharable sugars and energy from lignocellulosic matter.
因而,在第五態樣中,本發明之特徵在於一種自木質纖維素物質產生可醱酵糖的方法。該方法包括提供具有上述培養基及纖維素分解微生物之細胞的組合物;及使該組合物與木質纖維素物質接觸以產生可醱酵糖。在一實例中,培養基含有約0.1%至5%,例如1.0%(w/v)NP草碎片。可醱酵糖可為葡萄糖、木糖、阿拉伯糖、半乳糖、甘露糖、鼠李糖、蔗糖、果糖、乳糖、麥芽糖、海藻糖、纖維二糖、寡醣(例如纖維寡聚物或木糖寡聚物)或其任意組合。木質纖維素物質之實例包括纖維素性動物廢棄物、城市固體廢棄物、廢紙、庭院廢棄物、農業殘餘物、林業殘餘物及其任意組合。該方法可進一步包含將可醱酵糖轉化成醱酵產物的步驟。該轉化步驟可藉由微生物醱酵或酶處理來進行。Thus, in a fifth aspect, the invention features a method of producing a succulent sugar from a lignocellulosic material. The method comprises providing a composition having cells of the above medium and cellulolytic microorganisms; and contacting the composition with a lignocellulosic material to produce a sucrose. In one example, the medium contains from about 0.1% to 5%, such as 1.0% (w/v) NP grass debris. The soluble sugar can be glucose, xylose, arabinose, galactose, mannose, rhamnose, sucrose, fructose, lactose, maltose, trehalose, cellobiose, oligosaccharide (such as fiber oligomer or xylose). Oligomers) or any combination thereof. Examples of lignocellulosic materials include cellulosic animal waste, municipal solid waste, waste paper, yard waste, agricultural residues, forestry residues, and any combination thereof. The method can further comprise the step of converting the fermentable sugar to a fermentation product. This transformation step can be carried out by microbial fermentation or enzymatic treatment.
在第六態樣中,本發明之特徵在於一種自木質纖維素物質產生能量的方法。該方法包括:提供上述組合物;使該組合物與木質纖維素物質接觸以產生可醱酵糖;轉化該可醱酵糖以產生可燃醱酵產物;及燃燒該可燃醱酵產物或水解固體廢棄物或殘餘物以產生能量。In a sixth aspect, the invention features a method of generating energy from a lignocellulosic material. The method comprises: providing the above composition; contacting the composition with a lignocellulosic material to produce a sucrose; converting the sucrose to produce a flammable fermentation product; and burning the flammable fermentation product or hydrolyzing solid waste Object or residue to produce energy.
在第七態樣中,本發明之特徵在於一種飼料或食品添加劑加工、生物製漿或複合物處理的方法。該方法包括提供包含培養基及纖維素分解微生物之細胞的上述組合物;及使該組合物與待加工或處理的物質接觸。In a seventh aspect, the invention features a method of processing feed, biopulping or composite processing of feed or food additives. The method comprises providing the above composition comprising a medium and a cell of a cellulolytic microorganism; and contacting the composition with a substance to be processed or treated.
在第八態樣中,本發明之特徵在於一種生物反應器,其含有木質纖維素物質及上述組合物。In an eighth aspect, the invention features a bioreactor comprising a lignocellulosic material and the above composition.
一或多個本發明實施例之細節闡述於隨附圖式及以下描述中。根據該描述及圖式以及申請專利範圍,本發明之其他特徵、目標及優勢將顯而易見。The details of one or more embodiments of the invention are set forth in the accompanying drawings and the description below. Other features, objects, and advantages of the invention will be apparent from the description and appended claims.
本發明至少部分基於驚人地發現狼尾草可用作生長產生纖維素酶的纖維素分解真菌之有效而便宜之主要碳源。The present invention is based at least in part on the surprising discovery that Pennisetum can be used as an effective and inexpensive primary carbon source for growing cellulolytic enzymes that produce cellulase.
通常發現於熱帶及亞熱帶地區的狼尾(NP)草(象草)已廣泛用作反芻動物之飼料且其組成、性質及一些基因體資訊已得到充分研究;然而,尚無報導顯示NP草於微生物纖維素酶製備上之運用。本發明提供NP草作為用於生長自稻草或甘蔗渣堆肥分離之纖維素分解真菌(亦即鐮刀菌屬、曲黴菌屬及脈孢菌屬)之有效且便宜之C源的新應用。結果顯示,當使用1%(w/v)NP草作為3種真菌之主要C源時,總纖維素酶活性(FPase)顯著地增加(對於鐮刀菌屬、曲黴菌屬及脈孢菌屬分別自0.008增至0.085、自0增至0.085、自0.002增至0.124 U/ml)(圖1)。將所有個別培養條件最佳化後,鐮刀菌屬及脈孢菌屬之最佳纖維素酶產量分別為0.18至0.22 U/ml及0.14至0.16 U/ml。在所研究之C源(亦即葡萄糖、CMC及NP草)中,含有1% NP草之培養基不僅達成最佳纖維素分解活性,而且在所有所測試C源中為最便宜之組合。此發使NP草成為改良必需由纖維素分解微生物產生纖維素酶的生物燃料、紡織業及其他行業可額外選擇之主要C源。Wolftail (NP) grass (grass), which is commonly found in tropical and subtropical regions, has been widely used as a feed for ruminants and its composition, nature and genetic information have been well studied; however, no reports have been reported on NP grass. The use of microbial cellulase preparation. The present invention provides a new application of NP grass as an effective and inexpensive C source for growing cellulolytic fungi (i.e., Fusarium, Aspergillus, and Neurospora) isolated from straw or bagasse compost. The results showed that when 1% (w/v) NP grass was used as the main C source of the three fungi, the total cellulase activity (FPase) was significantly increased (for Fusarium, Aspergillus and Neurospora, respectively). It increased from 0.008 to 0.085, increased from 0 to 0.085, and increased from 0.002 to 0.124 U/ml (Fig. 1). After optimizing all individual culture conditions, the optimal cellulase yields of Fusarium and Neurospora were 0.18 to 0.22 U/ml and 0.14 to 0.16 U/ml, respectively. Among the C sources studied (i.e., glucose, CMC, and NP grass), the medium containing 1% NP grass not only achieved optimal cellulolytic activity, but was the cheapest combination among all tested C sources. This makes NP grass a major C source for the improvement of biofuels that must be produced by cellulolytic microorganisms to produce cellulase, the textile industry and other industries.
例如,纖維素酶自木質纖維素物質產生可醱酵糖及能量。如本文所使用之術語「木質纖維素物質」係指含有纖維素及/或半纖維素之物質。一般而言,此等物質亦含有木聚糖、木質素、蛋白質及碳水化合物,諸如澱粉及糖。例如,在植物之莖、葉、殼、皮及穗軸或樹木之葉、枝及木質部。複雜碳水化合物(諸如澱粉、纖維素或半纖維素)轉化成可醱酵糖之過程在本文中亦稱為「糖化」。如本文所使用之可醱酵糖係指單糖,諸如葡萄糖、木糖、阿拉伯糖、半乳糖、甘露糖、鼠李糖、蔗糖、果糖、乳糖、麥芽糖、海藻糖或纖維二糖。木質纖維素物質可包括原始植物生質及/或非原始植物生質,諸如農業生物質、商業有機物、建構物及破壞碎片、城市固體廢棄物、廢紙及庭院廢棄物。木質纖維素物質之常見形式包括樹、灌木及草、小麥、小麥秸稈、甘蔗渣、玉米、玉米皮、玉米粒,包括來自穀粒、研磨諸如玉米、稻穀、小麥及大麥之穀物(包括濕式研磨及乾式研磨)之產物及副產物的纖維,以及城市固體廢棄物、廢紙及庭院廢棄物。木質纖維素物質亦可為(但不限於)草本物質、農業殘餘物、林業殘餘物及造紙廠殘餘物。「農業生質」包括枝、灌木叢、節莖、玉米及玉米皮、能源作物、森林、果實、花、穀物、草、草本作物、葉、樹皮、針狀葉(needle)、原木、根、苗木、短輪伐期木質作物、灌木、柳枝稷(switch grass)、樹木、蔬菜、果皮、藤本植物、甜菜粕、小麥麩、燕麥殼、硬木及軟木(不包括含有害物質之木材)、農業過程所產生之有機廢棄物(包括耕種及林業活動,特別包括林業木材廢棄物)或其混合物。For example, cellulases produce saccharable sugars and energy from lignocellulosic matter. The term "lignocellulosic material" as used herein refers to a substance containing cellulose and/or hemicellulose. In general, such materials also contain xylan, lignin, proteins and carbohydrates such as starch and sugar. For example, in the stems, leaves, shells, skins and cobs of plants or the leaves, branches and xylem of trees. The process of converting complex carbohydrates, such as starch, cellulose or hemicellulose, into saccharable sugars is also referred to herein as "saccharification." A saccharable sugar as used herein refers to a monosaccharide such as glucose, xylose, arabinose, galactose, mannose, rhamnose, sucrose, fructose, lactose, maltose, trehalose or cellobiose. Lignocellulosic materials can include virgin plant biomass and/or non-primitive plant biomass, such as agricultural biomass, commercial organic matter, construction and destructive debris, municipal solid waste, waste paper, and yard waste. Common forms of lignocellulosic material include trees, shrubs and grasses, wheat, wheat straw, bagasse, corn, corn husks, corn kernels, including grains from grains, ground such as corn, rice, wheat, and barley (including wet Grinding and dry grinding of the products and by-product fibers, as well as municipal solid waste, waste paper and yard waste. Lignocellulosic materials can also be, but are not limited to, herbal materials, agricultural residues, forestry residues, and paper mill residues. "Agricultural biomass" includes branches, shrubs, stalks, corn and corn husks, energy crops, forests, fruits, flowers, grains, grasses, herbaceous crops, leaves, bark, needles, logs, roots, Seedlings, short-rotation woody crops, shrubs, switch grass, trees, vegetables, peels, vines, beetroots, wheat bran, oat hulls, hardwoods and cork (excluding wood containing harmful substances), agriculture Organic waste generated by the process (including cultivation and forestry activities, including forestry wood waste, in particular) or mixtures thereof.
此方法中所用之木質纖維素物質之實例包括(但不限於)果園剪枝、灌木叢、工廠廢棄物、城市木材廢棄物、城市廢棄物、砍伐廢棄物、森林撫育間伐、短輪伐期木質作物、工業廢棄物、小麥、小麥秸稈、燕麥秸稈、稻草、大麥秸稈、黑麥秸稈、亞麻秸稈、大豆殼、稻殼、燕麥殼、甘蔗、玉米、玉米秣草、玉米秸稈、玉米麵筋飼料、玉米穗、玉米皮、玉米粒、籽粒纖維、大網茅草、鴨茅狀磨擦禾(gamagrass)、狐尾草、甜菜粕、柑桔類水果漿、種殼、纖維素性動物廢棄物、草坪修剪物、棉花、海藻、樹木、灌木、草、甘蔗渣、穀物濕式研磨或乾式研磨之產物及副產物、城市固體廢棄物、廢紙、庭院廢棄物、草本物質、農業殘餘物、林業殘餘物、城市固體廢棄物、廢紙、紙漿、造紙廠殘餘物、枝、灌木叢、節莖、玉米、玉米皮、能源作物、森林、果實、花、穀物、草、草本作物、葉、樹皮、針狀葉、原木、根、苗木、灌木、柳枝稷、樹木、蔬菜、果皮、藤本植物、甜菜粕、小麥麩、燕麥殼、硬木及軟木、農業過程所產生之有機廢棄物、林業木材廢棄物或其組合。Examples of lignocellulosic materials used in this method include, but are not limited to, orchard pruning, shrubs, factory waste, municipal wood waste, municipal waste, felling waste, forest tending thinning, short rotation wood Crops, industrial waste, wheat, wheat straw, oat straw, straw, barley straw, rye straw, flax straw, soybean hulls, rice husks, oat hulls, sugar cane, corn, corn stalks, corn stalks, corn gluten feed, Ears of corn, corn husks, corn kernels, grain fibers, stalks, gamagrass, foxtail, beet mites, citrus fruit pulp, seed shells, cellulosic animal waste, lawn pruning Products, cotton, seaweed, trees, shrubs, grasses, bagasse, wet and dry grinding products and by-products, municipal solid waste, waste paper, yard waste, herbal materials, agricultural residues, forestry residues , municipal solid waste, waste paper, pulp, paper mill residues, branches, bushes, stalks, corn, corn husks, energy crops, forests, fruits, flowers, Cereals, grasses, herbaceous crops, leaves, bark, needles, logs, roots, seedlings, shrubs, switchgrass, trees, vegetables, peels, vines, beetroots, wheat bran, oat hulls, hardwoods and cork, agricultural processes Organic waste produced, forestry wood waste or a combination thereof.
在此研究中,用含有狼尾(NP)草(象草)、CMC或葡萄糖作為主要碳源之培養基培養鐮刀菌屬、曲黴菌屬及脈孢菌屬此等真菌菌株來產生細胞外纖維素酶。結果顯示,當使用1%(w/v)NP草培養3種分離之真菌時,總纖維素酶活性(基於FPase量測值)顯著增加,對於曲黴菌屬、鐮刀菌屬及脈孢菌屬分別自0(無NP)增至0.085 U/ml(1% NP)、自0.008增至0.085 U/ml及自0.002增至0.124 U/ml;亦即為用1%(w/v)CMC培養時之總纖維素酶活性的約1至23倍。在經最佳化之培養條件下達成最佳纖維素酶活性(對於曲黴菌屬及脈孢菌屬分別為0.18至0.22 U/ml及0.14至0.16 U/ml)。此外,自1% NP批料收集之纖維素酶具有良好pH值及溫度工作範圍,且在廣泛pH值下呈穩定。在所有所測試之C源中,含有NP草之培養基不僅達成最佳纖維素分解活性,而且為最便宜之組合。此發現使NP草成為改良必需由纖維素分解真菌產生纖維素酶的生物燃料、紡織業及其他行業可額外選擇之主要碳源。In this study, fungal strains of Fusarium, Aspergillus and Neurospora were cultured in a medium containing Wolftail (NP) grass (Ceramic), CMC or glucose as the main carbon source to produce extracellular cellulose. Enzyme. The results showed that when three isolated fungi were cultured using 1% (w/v) NP grass, total cellulase activity (based on FPase measurements) increased significantly for Aspergillus, Fusarium, and Neurospora Increased from 0 (no NP) to 0.085 U/ml (1% NP), increased from 0.008 to 0.085 U/ml, and increased from 0.002 to 0.124 U/ml; that is, cultured with 1% (w/v) CMC. The total cellulase activity is about 1 to 23 times. Optimal cellulase activity was achieved under optimized culture conditions (0.18 to 0.22 U/ml and 0.14 to 0.16 U/ml for Aspergillus and Neurospora, respectively). In addition, cellulases collected from 1% NP batches have good pH and temperature operating ranges and are stable over a wide range of pH values. Among all the C sources tested, the medium containing NP grass not only achieved the best cellulolytic activity, but also the cheapest combination. This finding makes NP grass a major carbon source for the improvement of biofuels that must be produced by cellulolytic fungi to produce cellulase, the textile industry and other industries.
因此,本文所揭示之培養基、組合物及方法可以美國申請案20100047869及20080131958及美國專利5232851、5677151、6451063、6602700及7226773中所述之方式用於飼料或食品添加劑加工、生物製漿或複合物處理中,各案之內容係以引用的方式併入本文中。Thus, the culture media, compositions, and methods disclosed herein can be used in feed or food additive processing, biopulping, or composites in the manner described in U.S. Patent Application Nos. 20,100,047, 869 and 2008, 013, 958, and U.S. Patent Nos. 5,232,851, 5,671,151, 6, 061, 063, 6, 602, 00 In the processing, the contents of each case are incorporated herein by reference.
以下特定實例應解釋為僅具說明性,且不以任何方式限制本發明之其餘部分。無需進一步闡明,咸信熟習此項技術者可基於本文之描述最大限度地利用本發明。本文所引用之所有公開案均以全文引用的方式併入本文中。此外,下文提出之任何機制不以任何方式限制所主張之本發明的範疇。The following specific examples are to be construed as illustrative only and not limiting in any way. Without further elaboration, the skilled artisan can make the most of the present invention based on the description herein. All publications cited herein are hereby incorporated by reference in their entirety. In addition, any mechanism proposed below does not limit the scope of the claimed invention in any way.
在此研究中,使用3種產生纖維素酶之菌株,鐮刀菌屬、曲黴菌屬及脈孢菌屬。3種真菌菌株之培養條件經最佳化以達成最佳纖維素酶活性。將3種不同的天然或人工碳源(亦即狼尾草、CMC或葡萄糖)補充至培養基中以評估其在較低成本下增加纖維素酶產量的潛能。In this study, three cellulase producing strains, Fusarium, Aspergillus, and Neurospora were used. The culture conditions of the three fungal strains were optimized to achieve optimal cellulase activity. Three different natural or artificial carbon sources (i.e., Pennisetum, CMC or glucose) were supplemented to the medium to assess their potential to increase cellulase production at lower cost.
2.1受質2.1 quality
NP草獲自臺灣畜產試驗所(Taiwan Livestock Research Institute)(Hsin-hua,Tainan,Taiwan)。羧甲基纖維素(CMC)、葡萄糖、β-對硝基-苯基-糖苷(β-pNPG)、華特曼(Whatman)1號紙及此研究中所使用之所有化學物質均購自Sigma。CMC、華特曼1號紙及β-pNPG分別為CMCase、β-葡糖苷酶及FPase量測之受質。在3種真菌中,CMC、葡萄糖及NP草以1%(w/v)之濃度用作碳源以研究纖維素酶的產生。將NP草風乾,使用切碎機切成小片,研磨成較小顆粒,且接著最後藉由通過0.45 mm篩網加以分離。培養基之製備係使用通過篩網之部分及市售化學物質。NP grass was obtained from the Taiwan Livestock Research Institute (Hsin-hua, Tainan, Taiwan). Carboxymethylcellulose (CMC), glucose, β-p-nitro-phenyl-glycoside (β-pNPG), Whatman No. 1 paper, and all chemicals used in this study were purchased from Sigma. . CMC, Waterman No. 1 paper and β-pNPG were the substrates for CMCase, β-glucosidase and FPase measurements, respectively. Among the three fungi, CMC, glucose, and NP grass were used as a carbon source at a concentration of 1% (w/v) to study the production of cellulase. The NP grass was air dried, cut into small pieces using a chopper, ground into smaller particles, and finally separated by passing through a 0.45 mm screen. The medium is prepared using a portion that passes through the screen and a commercially available chemical.
2.2接種及培養條件 2.2 inoculation and culture conditions
在28℃下將Fp及RS-N菌株維持於PDA瓊脂上5至7天,然而RS-A係維持於35℃下,在此時間下,孢子形成的狀況良好。使用來自此培養物之新鮮菌絲作為接種物。藉由用5 ml經滅菌H2O洗滌斜面培養物來製備分生孢子懸浮液。使用血球計對孢子懸浮液進行計數達108個孢子/毫升。將鐮刀菌屬、曲黴菌屬及脈孢菌屬之2毫升孢子懸浮液在含有100 ml MR培養基(不含0.1%大豆蛋白腖)的250 ml燒瓶中生長,分別使用1% NP草、1% CMC或1%葡萄糖作為碳源來研究纖維素酶產生。在5天培養期間記錄生長於不同碳源中之3種真菌的纖維素酶活性。關於NP草之最佳濃度,採用不同百分比之NP且在各別最佳生長條件下用MR培養基(不含0.1%大豆蛋白腖)進行培養。The Fp and RS-N strains were maintained on PDA agar for 5 to 7 days at 28 ° C, whereas the RS-A line was maintained at 35 ° C, at which time sporulation was in good condition. Fresh hyphae from this culture were used as inoculum. With the sterilized with 5 ml H 2 O and washed slant culture prepared conidium suspension. The spore suspension was counted to 10 8 spores/ml using a hemocytometer. A 2 ml spore suspension of Fusarium, Aspergillus and Neurospora was grown in a 250 ml flask containing 100 ml of MR medium (without 0.1% soy peptone) using 1% NP grass, 1% CMC, respectively. Or 1% glucose as a carbon source to study cellulase production. Cellulase activity of three fungi grown in different carbon sources was recorded during 5 days of culture. Regarding the optimal concentration of NP grass, different percentages of NP were used and cultured under MR medium (excluding 0.1% soy peptone) under the optimal growth conditions.
2.3 3種真菌的粗纖維酶製劑 2. 3 crude fiber enzyme preparations of fungi
將用1% NP草培養之鐮刀菌屬、曲黴菌屬及脈孢菌屬的培養液在8,000×g下離心20分鐘以移除菌絲及未利用之受質。上清液經由華特曼1號紙及0.45 μm膜進行過濾,且接著藉由用併有3 kDa膜(Vivaspin 20)之Amicon濃縮裝置過濾加以濃縮,過濾過程之FPase活性損失小於3%。於上清液中添加0.01%(v/w)疊氮化鈉(NaN3)以防止微生物生長。含有0.01% NaN3及0.01%苯基甲烷磺醯氟(PMSF,一種絲胺酸蛋白酶抑制劑)的經濃縮粗酶製劑可在4℃下儲存,1週後仍可保留80%的活性。使用粗酶製劑研究酶特徵,包括最佳pH值、pH值穩定性、最佳溫度及熱穩定性。The culture solution of Fusarium, Aspergillus, and Neurospora cultured in 1% NP grass was centrifuged at 8,000 × g for 20 minutes to remove hyphae and unused coat. The supernatant was filtered through a Waterman No. 1 paper and a 0.45 μm membrane, and then concentrated by filtration through an Amicon concentrator equipped with a 3 kDa membrane (Vivaspin 20), and the FPase activity loss of the filtration process was less than 3%. 0.01% (v/w) sodium azide (NaN 3 ) was added to the supernatant to prevent microbial growth. The concentrated crude enzyme preparation containing 0.01% NaN 3 and 0.01% phenylmethanesulfonate (PMSF, a serine protease inhibitor) can be stored at 4 ° C and retains 80% activity after 1 week. Enzyme characteristics were studied using crude enzyme preparations, including optimal pH, pH stability, optimal temperature and thermal stability.
2.4纖維素酶(CMCase、FPase及β-葡糖苷酶)活性檢定 2.4 Cellulase (CMCase , FPase and β-glucosidase) activity assay
關於碳源活性測試,使用方法中所述之相應1%受質在40℃下量測鐮刀菌屬之粗酶萃取物的CMCase、β-葡糖苷酶及FPase之活性,但對於曲黴菌屬及脈孢菌屬,則在50℃下進行量測。在200 μl反應混合物(100 μl粗酶及100 μl於100 mM NaOAC、100 mM NaCl(pH5.0)中之2%受質)中量測於10分鐘內自1% CMC釋放的還原糖來測定CMCase。使用3 mg 1號(華特曼)濾紙作為受質在200 μl反應混合物(如上)中1小時來測定FPase活性。在添加200 μl二硝基水楊酸(DNS)且在100℃下加熱10分鐘後,使用改進之DNS法測定總釋放還原糖(Wood等人,1988)。一個單位(IU) CMCase及FPase活性定義為,在檢定條件下每分鐘釋放1 μmol葡萄糖(作為還原糖當量)之酶的量。關於β-葡糖苷酶活性,藉由將β-pNPG(最終濃度:1 mM)與在乙酸鈉緩衝液(100 mM NaOAC、100 mM NaCl,pH5.0)中製備之10 μl酶溶液混合所得到之150 μl工作體積來進行3種真菌之檢定。培育10分鐘後,藉由添加50 μl 2 M碳酸鈉終止反應。用分光光度計在400 nm下量測3種真菌之反應混合物的吸光度。基於4-硝基苯酚校準曲線計算β-葡糖苷酶活性。一個單位之酶活性定義為每分鐘釋放1 μmol 4-硝基苯酚當量。For the carbon source activity test, the corresponding 1% substrate described in the method was used to measure the activity of CMCase, β-glucosidase and FPase of the crude enzyme extract of Fusarium at 40 ° C, but for Aspergillus spp. The genus Neurospora was measured at 50 °C. The reducing sugar released from 1% CMC was measured in 10 minutes in 200 μl of the reaction mixture (100 μl of crude enzyme and 100 μl of 2% substrate in 100 mM NaOAC, 100 mM NaCl (pH 5.0)). CMCase. FPase activity was determined using 3 mg No. 1 (Watman) filter paper as the substrate in a 200 μl reaction mixture (as above) for 1 hour. After the addition of 200 μl of dinitrosalicylic acid (DNS) and heating at 100 ° C for 10 minutes, the total release reducing sugar was determined using the modified DNS method (Wood et al., 1988). One unit (IU) of CMCase and FPase activity is defined as the amount of enzyme that releases 1 μmol of glucose per minute (as reducing sugar equivalent) under assay conditions. Regarding β-glucosidase activity, a β-pNPG (final concentration: 1 mM) was mixed with a 10 μl enzyme solution prepared in a sodium acetate buffer (100 mM NaOAC, 100 mM NaCl, pH 5.0). A 150 μl working volume was used to perform three fungal assays. After 10 minutes of incubation, the reaction was stopped by the addition of 50 μl of 2 M sodium carbonate. The absorbance of the reaction mixtures of the three fungi was measured at 400 nm using a spectrophotometer. The β-glucosidase activity was calculated based on the 4-nitrophenol calibration curve. One unit of enzyme activity is defined as the release of 1 μmol of 4-nitrophenol equivalent per minute.
諸如培養基複雜性及受質結構複雜性之培養因素可能影響絲狀真菌分泌水解酶(Kurchenko等人,2001)。在此研究中,估計不同的C源(亦即NP草及CMC)改良鐮刀菌屬、曲黴菌屬及脈孢菌屬之纖維素酶分泌的潛能。結果顯示,3種真菌在無C源補充劑之培養基中生長下之總纖維素酶活性(FPase)極低。一旦在存在1%(w/v)NP草後(但在無有機N條件下培養)(表1及圖1),FPase活性顯著增加約60至105倍(亦即對於鐮刀菌屬、曲黴菌屬及脈孢菌屬而言,分別自0增至0.062 U/ml、自0.008增至0.085 U/ml及自0.002增至0.124 U/ml),此表示NP草可大量誘導纖維素酶的產生。CMCase及β-葡糖苷酶活性亦顯示類似提高的現象(表1),與FPase相比,活性提高之程度更大。此外,用1% NP草培養之批次的FPase活性為用1% CMC培養之批次的約1至23倍。此等結果表示NP草可用作理想C源以改良此研究中接種之纖維素分解真菌的纖維素酶之產生。Culture factors such as media complexity and complexity of the structure of the substrate may affect the secretion of hydrolase by filamentous fungi (Kurchenko et al., 2001). In this study, it was estimated that different C sources (ie, NP grass and CMC) improved the cellulase secretion potential of Fusarium, Aspergillus, and Neurospora. The results showed that the total cellulase activity (FPase) of the three fungi grown in the medium without the C source supplement was extremely low. Once in the presence of 1% (w/v) NP grass (but cultured in the absence of organic N) (Table 1 and Figure 1), FPase activity is significantly increased by about 60 to 105 times (ie for Fusarium, Aspergillus) For the genus and Neurospora, they increased from 0 to 0.062 U/ml, from 0.008 to 0.085 U/ml and from 0.002 to 0.124 U/ml, respectively, indicating that NP grass can induce cellulase production in large quantities. . CMCase and β-glucosidase activities also showed similar increases (Table 1), and the activity was increased to a greater extent than FPase. In addition, the FPase activity of the batch cultured with 1% NP grass was about 1 to 23 times that of the batch cultured with 1% CMC. These results indicate that NP grass can be used as an ideal C source to improve the production of cellulase enzymes of the cellulolytic fungi inoculated in this study.
此外,進一步評估纖維素酶產生之最佳NP草濃度。通常,對於鐮刀菌屬及脈孢菌屬而言,FPase活性隨NP草之量升高而增強,除了5% NP以外(圖2b及圖2c)。鐮刀菌屬、曲黴菌屬及脈孢菌屬分別在2%、5%及3% NP草下培育4至5天後出現FPase最大值;該值比1% NP之值甚至更佳。本研究中所研發之基於NP草之培養基預期可節約50%培養基成本,而C源花費通常為總培養基成本之一半以上(表2)。據此推斷,NP草可為用於經濟纖維素酶生產之更佳受質源。In addition, the optimal NP grass concentration produced by cellulase was further evaluated. In general, for Fusarium and Neurospora, FPase activity is enhanced with increasing amounts of NP grass, except for 5% NP (Figure 2b and Figure 2c). Fusarium, Aspergillus, and Neurospora showed FPase maximal after 4 to 5 days of incubation under 2%, 5%, and 3% NP grasses; this value was even better than the 1% NP value. The NP grass-based medium developed in this study is expected to save 50% of the culture cost, while the C source cost is usually more than one-half of the total medium cost (Table 2). It is concluded that NP grass can be a better source of quality for economic cellulase production.
當使用NP草作為主要碳源時,3種真菌達成FPase活性為使用1% CMC作為主要碳源時之FPase活性的1.1至23倍;且為無NP草時之FPase活性的60至105倍。在所研究之C源(亦即葡萄糖、CMC及NP草)中,使用最佳NP草濃度之培養基不僅達成最佳纖維素分解活性,而且在所有所測試之C源中為最便宜之組合。以上性質表示,衍生自RS-A、Fp及RS-N之纖維素酶可用作自纖維素製備生物乙醇的關鍵酶。When NP grass was used as the main carbon source, the three fungi achieved FPase activity of 1.1 to 23 times the FPase activity when using 1% CMC as the main carbon source; and 60 to 105 times the FPase activity in the absence of NP grass. Among the C sources studied (i.e., glucose, CMC, and NP grass), the medium using the optimal NP grass concentration not only achieved optimal cellulolytic activity, but was the cheapest combination among all C sources tested. The above properties indicate that cellulases derived from RS-A, Fp and RS-N can be used as key enzymes for the preparation of bioethanol from cellulose.
本說明書中所揭示之所有特徵可組合成任何組合。本說明書中所揭示之各特徵可由用於相同、等效或類似目的之替代性特徵置換。因而,除非另外明確陳述,否則所揭示之各特徵僅為一般等效或類似特徵系列的一個實例。All of the features disclosed in this specification can be combined in any combination. Each feature disclosed in this specification can be replaced by alternative features for the same, equivalent or similar purpose. Thus, unless expressly stated otherwise, the disclosed features are only one example of a series of generally equivalent or similar features.
已描述許多本發明實施例。然而應理解,可在不背離本發明之精神及範疇下進行各種修改。因此,其他實施例處於以下申請專利範圍之範疇內。A number of embodiments of the invention have been described. It will be understood, however, that various modifications may be made without departing from the spirit and scope of the invention. Accordingly, other embodiments are within the scope of the following claims.
Bhat,M.K.,2000. Cellulases and related enzymes in biotechnology. Biotechnol Adv,18,355-83。Bhat, MK, 2000. Cellulases and related enzymes in biotechnology. Biotechnol Adv , 18, 355-83.
Grajek,W.,1987. Comparative studies on the production of cellulases by thermophilic fungi in submerged and solid-state fermentation. Appl Microbiol and Biotechnol,26,126-129。Grajek, W., 1987. Comparative studies on the production of cellulases by thermophilic fungi in submerged and solid-state fermentation. Appl Microbiol and Biotechnol , 26, 126-129.
Kurchenko,I.M.,Zhdanova,N.M.,Sokolova,O.V.,2001. Study of availability of some hydrolytic and redox enzymes in strains of Fusarium oxysporum(Schlecht.) Snyd. and Hans. isolated from different habitats. Mikrobiol Z,63,34-43。Kurchenko, IM, Zhdanova, NM, Sokolova, OV, 2001. Study of availability of some hydrolytic and redox enzymes in strains of Fusarium oxysporum (Schlecht.) Snyd. and Hans. isolated from different habitats. Mikrobiol Z , 63, 34-43 .
Lee,M.,Hwang,S.,Chiou,P.W. 2000. Metabolizable energy of roughage in Taiwan. Small Rumin Res,36(3),251-259。Lee, M., Hwang, S., Chiou, PW 2000. Metabolizable energy of roughage in Taiwan. Small Rumin Res , 36(3), 251-259.
Lockington,R.A.,Rodbourn,L.,Barnett,S.,Carter,C.J.,Kelly,J.M.,2002. Regulation by carbon and nitrogen sources of a family of cellulases in Aspergillus nidulans. Fungal Genet Biol,37,190-6。Lockington, RA, Rodbouurn, L., Barnett, S., Carter, CJ, Kelly, JM, 2002. Regulation by carbon and nitrogen sources of a family of cellulases in Aspergillus nidulans. Fungal Genet Biol , 37, 190-6.
Lynd,L.R.,Weimer,P.J.,van Zyl,W.H.,Pretorius,I.S.,2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev,66,506-77,目錄。Lynd, LR, Weimer, PJ, van Zyl, WH, Pretorius, IS, 2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev , 66, 506-77, catalog.
Pavarina,E.C.,Durrant,L.R.,2002. Growth of lignocellulosic-fermenting fungi on different substrates under low oxygenation conditions. Appl Biochem Biotechnol,98-100,663-77。Pavarina, EC, Durrant, LR, 2002. Growth of lignocellulosic-fermenting fungi on different substrates under low oxygenation conditions. Appl Biochem Biotechnol , 98-100, 663-77.
Prakash,B.,Dhali,A.,Mondal,M.,Sangtam,M.,Khate,K.,Rathore,S.S.,Rajkhowa,C. 2008. Effect of feeding Lagerstroemia speciosa and conventional fodder based rations on nutrient utilization,ruminal metabolites and body weight gain in mithun(Bos frontalis). J Anim Physiol Anim Nutr(Berl),92(5),591-6。Prakash, B., Dhali, A., Mondal, M., Sangtam, M., Khate, K., Rathore, SS, Rajkhowa, C. 2008. Effect of feeding Lagerstroemia speciosa and conventional fodder based rations on nutrient utilization, ruminal Metabolites and body weight gain in mithun (Bos frontalis). J Anim Physiol Anim Nutr (Berl), 92(5), 591-6.
Sheehan,J.,Himmel,M.,1999. Enzymes,Energy,and the Environment: A Strategic Perspective on the U.S. Department of Energy's Research and Development Activities for Bioethanol. Biotechnol Prog,15,817-827。Sheehan, J., Himmel, M., 1999. Enzymes, Energy, and the Environment: A Strategic Perspective on the US Department of Energy's Research and Development Activities for Bioethanol. Biotechnol Prog , 15, 817-827.
Wood,T.M.,Willis,A.W.a.S.T.K.,1988. Preparation of crystalline,amorphous,and dyed cellulase substrates. Method Enzymol. Academic Press,第19-25頁。Wood, TM, Willis, AWaSTK, 1988. Preparation of crystalline, amorphous, and dyed cellulase substrates. Method Enzymol . Academic Press, pp. 19-25.
圖1a至圖1c為顯示對於3種真菌(a)鐮刀菌屬、(b)曲黴菌屬及(c)脈孢菌屬而言,與使用1% CMC相比,使用1%(w/v)NP草增強總纖維素酶產生(FPase活性)的圖。所有菌株在不存在大豆蛋白腖之MR培養基中且以1% NP或1%CMC作為主要碳源進行培養。在不含上述C源之相同培養基中培養的菌株指定為對照實驗(亦即無NP)。一般條件為pH 7.0,25℃至35℃,及150 rpm,以1% NP草作為對照實驗。Figures 1a to 1c show the use of 1% (w/v) for 3 fungi (a) Fusarium, (b) Aspergillus and (c) Neurospora compared to 1% CMC. A map of NP grass enhancing total cellulase production (FPase activity). All strains were cultured in MR medium in the absence of soy peptone and with 1% NP or 1% CMC as the main carbon source. The strain cultured in the same medium without the above C source was designated as a control experiment (i.e., no NP). The general conditions were pH 7.0, 25 ° C to 35 ° C, and 150 rpm with 1% NP grass as a control experiment.
圖2a至圖2c為顯示對於3種真菌(a)鐮刀菌屬、(b)曲黴菌屬及(c)脈孢菌屬而言,NP草顯著增強總纖維素酶產生(FPase)之最佳濃度的圖。所有菌株在不存在大豆蛋白腖之MR培養基中以不同百分比之NP作為主要碳源在各別最佳生長條件下進行培養。一般條件為pH 7.0,25℃至35℃,及150 rpm,以1% NP草作為對照實驗。Figures 2a to 2c show that NP grass significantly enhances total cellulase production (FPase) for the three fungi (a) Fusarium, (b) Aspergillus, and (c) Neurospora. The map of the concentration. All strains were cultured in MR culture medium in the absence of soy peptone with different percentages of NP as the main carbon source under the respective optimal growth conditions. The general conditions were pH 7.0, 25 ° C to 35 ° C, and 150 rpm with 1% NP grass as a control experiment.
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