TWI321567B - Antifreeze protein analogue and nucleic acid coding sequence thereof, and production and use of the same - Google Patents
Antifreeze protein analogue and nucleic acid coding sequence thereof, and production and use of the same Download PDFInfo
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1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1日 九、發明說明: C發明所屬之技術領域j 發明領域 本發明疋有關於會降低水的;東結點(freezing point)的 5新穎抗凍胜肽類似物(antifreeze peptide analogues),它們可 供應用在食品、製藥、生物技術與基因工程等產業領域上, 例如’當作要被進行冷藏或冷凍處理的各種含有水的產品 (water-containing products)(包括藥品、食品、動植物細胞、 微生物、血液等等)的抗;東劑(anti_freezing agent或 10 cryoprotectant)。本發明亦有關於該抗凍胜肽類似物的核酸 編碼序列(nucleic acid coding sequence),以及利用重組DNA 技術來生產重組型抗束蛋白類似物。 C 先前 3 發明背景 15 抗束蛋白(Antifreeze proteins, AFPs)是某些生存於極 地或寒冷地區的生物體内所特有的蛋白質。存在於該等生 物體内的此種蛋白質具有降低該等生物體的體液凍結點 (freezing point)的效果,而使得該等生物可免於因凍結而死 亡。目前的研究顯示,除極地海域的魚類以外,一些生存 20 於寒帶地區的生物,例如植物(M a/.1321567 Patent No. 095118228 Revision of Amendment Page of Patent Application No.: October 1, 1998. Illustrated: Technical Field of C Invention Y Field of the Invention The present invention relates to the reduction of water; the freezing point 5 novel antifreeze peptide analogues, which can be used in industries such as food, pharmaceutical, biotechnology and genetic engineering, such as 'as water containing various types of water to be refrigerated or frozen Resistance to water-containing products (including pharmaceuticals, food, animal and plant cells, microorganisms, blood, etc.); anti-freezing agent or 10 cryoprotectant. The invention also relates to a nucleic acid coding sequence of the antifreeze peptide analog, and the use of recombinant DNA technology to produce a recombinant anti-beam protein analog. C Previous 3 Background 15 Antifreeze proteins (AFPs) are proteins that are unique to certain organisms that live in polar or cold regions. Such proteins present in such organisms have the effect of reducing the freezing point of body fluids of such organisms, thereby rendering such organisms free from death by freezing. Current research shows that in addition to fish in the polar waters, some organisms that survive in the frigid zone, such as plants (M a/.
Plant Physiol., 100:593-596; M. Urrutia et al. (1992),Plant Physiol., 100:593-596; M. Urrutia et al. (1992),
Biochim. Biophys·,Acta. 1121:199-206、、^^(Duman.J.G· and Olsen, T.M. (1993),Cryobiology, 30: 322-328)輿良氣 (L.A. Graham, et al. (1997),Nature, 388:727-728),在後内亦 5 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 含有抗凍蛋白。但是,此等生物所具有的抗凍蛋白的胺基 酸組成以及結構迥異。 在當今針對抗凍蛋白的研究當中,以魚類的抗凍蛋白 被研究的較為清楚(Fee«少,兄五.yeA,Z, di/v. 5 Chem. (1978), 32:191-282, Food Technol. (1993), 47: 82-90, and Trends in Food Sci. and Technol. (1998), 9:102-106; A.L. DeVries, Annu. Rev. Physiol. (1983), 45:245-260; Davies, P.L. and Hew, C.L·,FASEB J. (1990), 4: 2460-2468)。抗凍蛋臼依 照糖基(glycosyl group)的有無可被區分為兩大類:一類為 10 帶有糖基的抗;東糖蛋白(antifreeze glycoproteins, AFGPs), 而另一類為不具糖基的抗;東蛋白(antifreeze proteins, AFPs)。另外,抗凍蛋白依照胺基酸組成與結構上的差異可 被區分為第I型(type I)、第II型(type II)、第III型(type III)及 • 第IV型(type IV)等四型。 15 第I型抗凍蛋白是富含丙胺酸的α -螺旋狀多肽 (alanine-riched a -helical polypeptides),其被發現存在於右 鶴科的魚類(right-eye flounders, P/ewrowechi/ae)與杜父魚 (sculpins)。第II型抗束蛋白是11〜24 kDa的富含胱胺酸的蛋 白質(cystine-rich proteins),其被發現存在於方尾魚科(sea 20 raven) ' 銀白魚(smeit)與排魚(herring)。核磁共振(Nuclear Magnetic Resonance,NMR)結構測定顯示第II型抗康蛋白是 帶有一些雙硫鍵橋(disulfide bridges)的yS -結構化蛋白質 (沒-structured proteins)。第 III型抗象蛋白是7 kDa 與 14kDa 的球體狀蛋白(globular proteins),其被發現存在於綿[魚尉] 6 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 亞目(Zoarcoid)的魚類,包含黏魚(eelpout)與狼魚 (wolffish)。第IV型抗凍蛋白被發現存在於長角杜父魚 (longhorn sculpin,參見 G. Deng etal. (1997),FEBS Letters, 402: 17-20),矣為 12.3k〇2i 5 並被預測具有一螺旋束結構(helix bundle structure)。雖然上 述各類抗凍蛋白在結構上明顯不同,它們有一共同的能力 是會藉由與冰面(ice surface)結合而抑制冰晶成長(ice crystal growth)。 下面的表1列出迄今被報導的第I型抗束蛋白,它們的 10 分子量約為3〜10 kDa,共同特徵為富含丙胺酸(丙胺酸含量 >60%),而且於一級結構(primary structure)上主要包含有 一個具有11個殘基的重複單元(11-residue repeating unit)。 特別地,寒冬比目魚(Winter flounder)的第I型抗凍蛋白所具 有的重複單元的胺基酸序列為“Thr-X2-Asx-X7”,其中X大 15 多是丙胺酸或另一種有利於α -螺旋形成的胺基酸,而Asx 表示天冬醯胺酸(asparagine,Asn)或天冬胺酸(aspartic acid, Asp)。 7 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 步«^^^-emperature of thermal hysteresis) ;^s加旖*--3 扣申0珀*谇护0 1 mg/mL^薄3筚3渰*萆"谇: its-^tss^atM^*^^柯务,-ijuoit^s-^Νδ^2•批 + 扣蜗6?*阵护7 mg/mL Τ薄*|羊S泼海苺辟谇·- 4»"冰3蜗卟1?3冷屮 ± ^^妒 9.7kDa· '"序^奇53*^3"谇抹谇硌冲和蜗卧*洚谇啟10 39/彐|_+5渔^3 x=>^Bss{asparagine)'58ssuthreonine)iaaaB{-anine): {Longhorn sculpin) 详 >-m.#. 舛令"•ta.·* sss+> (Dusky Sn3il'-sh) Α»^*·^.·* {Atlantic wna二fiwh) -*^5ζ.Α -*^50 (Arctic sculpin> 逭^谇茁片.·* ^^^^50 (GrubCTy sculpin) 茚尨佑妗'*, 茚s佑5C .·* {Shorthorn sculpin) 3^5Λ0δΑ {Aimskmn plaice) {Yellowtail flounder) 详爷-B.·* ^-^-0^ 详令tta'*, (winterflouncjer) $Biochim. Biophys., Acta. 1121:199-206, ^^ (Duman. JG and Olsen, TM (1993), Cryobiology, 30: 322-328) Gra good gas (LA Graham, et al. (1997) , Nature, 388: 727-728), in the latter also 5 1321567 No. 095118228 Patent Application Manual Amendment Page Correction Period: October 1st, 1998 contains antifreeze protein. However, the amino acid composition and structure of the antifreeze proteins possessed by these organisms are very different. In today's research on antifreeze proteins, the antifreeze proteins of fish have been studied more clearly (Fee«少, 兄五.yeA, Z, di/v. 5 Chem. (1978), 32:191-282, (Technology Technol. (1993), 47: 82-90, and Trends in Food Sci. and Technol. (1998), 9:102-106; AL DeVries, Annu. Rev. Physiol. (1983), 45:245-260 Davies, PL and Hew, CL·, FASEB J. (1990), 4: 2460-2468). Antifreeze egg yolk can be divided into two categories according to the presence or absence of glycosyl group: one is 10 with glycosylation; the antifreeze glycoproteins (AFGPs), and the other is glycosyl-free; Antifreeze proteins (AFPs). In addition, antifreeze proteins can be classified into type I (type I), type II (type II), type III (type III), and type IV (type IV) according to the difference in amino acid composition and structure. ) and so on. 15 Type I antifreeze proteins are alanine-riched a-helical polypeptides found in right-eye flounders (P/ewrowechi/ae) With the sculpins. Type II anti-globin is a cyste-rich protein of 11 to 24 kDa, which was found in the sea 20 raven 'smeit' and squid ( Herring). Nuclear Magnetic Resonance (NMR) structural measurements showed that Type II anti-Kang protein is a yS-structured protein with some disulfide bridges. Type III anti-image proteins are 7 kDa and 14 kDa globular proteins, which were found in cotton [fish carp] 6 1321567 No. 095118228 Patent Application Revision Revision Date: October 1, 1998 Zoarcoid fish, including eelpout and wolffish. Type IV antifreeze protein was found in longhorn sculpin (see G. Deng et al. (1997), FEBS Letters, 402: 17-20), 矣 12.3k 〇 2i 5 and was predicted to have A helix bundle structure. Although the above-mentioned various types of antifreeze proteins are structurally distinct, they have a common ability to inhibit ice crystal growth by binding to an ice surface. Table 1 below lists the type I anti-beam proteins reported to date, which have a molecular weight of about 3 to 10 kDa, which is characterized by alanine-rich (alanine content > 60%) and in the primary structure ( The primary structure mainly contains a 11-residue repeating unit. In particular, the amino acid sequence of the repeating unit of the type I antifreeze protein of Winter flounder is "Thr-X2-Asx-X7", wherein X is more than 15 is alanine or the other is beneficial. The α-helix forms an amino acid, and Asx represents asparagine (Asn) or aspartic acid (Asp). 7 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1st step «^^^-emperature of thermal hysteresis); ^s plus *--3 Deduction Shen 0 Per* protection 0 1 mg /mL^薄3筚3渰*萆"谇: its-^tss^atM^*^^柯务,-ijuoit^s-^Νδ^2•Patch+ 扣蜗6?* 阵护7 mg/mL Infertile*|Sheep S splashing sea berry 谇·· 4»"Ice 3 worm 卟1?3 屮±^^妒9.7kDa· '"Preface^奇53*^3"谇抹谇硌冲和蜗卧洚谇洚谇洚谇10 39/彐|_+5渔^3 x=>^Bss{asparagine)'58ssuthreonine)iaaaB{-anine): {Longhorn sculpin) detail>-m.#. 舛令 " ;•ta.·* sss+> (Dusky Sn3il'-sh) Α»^*·^.·* {Atlantic wna two fiwh) -*^5ζ.Α -*^50 (Arctic sculpin> 逭^谇茁片.·* ^^^^50 (GrubCTy sculpin) 茚尨佑妗'*, 茚syou 5C .·* {Shorthorn sculpin) 3^5Λ0δΑ {Aimskmn plaice) {Yellowtail flounder) 详爷-B.·* ^ -^-0^ Detailed order tta'*, (winterflouncjer) $
IssAFPIssAFP
SssAFP2SssAFP2
WfsAFP3 IAFP2WfsAFP3 IAFP2
Lg.AFP2Lg.AFP2
La-AFP AS3 AS1 GS8La-AFP AS3 AS1 GS8
Gs sw8 SS3Gs sw8 SS3
APAP
YTAFP 5a-滓申证珀 {5'm'-ike protein) AFP9 HPLC8 HPLC6 啉证*/谋痒知* 泠;12! 7.* 0.30 {skin-type) $ $ 玮5! (liver-type) 3.5 3·4 3.4 9,6 9.3 2.9 3.4 3.4 3.0 4.0 2.9 •5 4.0 16·7 3 3.3 3.2 雲 tkpa) 81 CM· 83 79 73 s 00°1 典笫呤1(。/0) P15 0.1°1 0.6® 0.67YTAFP 5a-滓申证珀{5'm'-ike protein) AFP9 HPLC8 HPLC6 morphine*/ itchitch* 泠;12! 7.* 0.30 {skin-type) $ $ 玮5! (liver-type) 3.5 3·4 3.4 9,6 9.3 2.9 3.4 3.4 3.0 4.0 2.9 •5 4.0 16·7 3 3.3 3.2 Cloud tkpa) 81 CM· 83 79 73 s 00°1 Code 1 (./0) P15 0.1°1 0.6® 0.67
PS 0.56 0.60 0.68 SDAPAKAAAK TAADAKAAAAK TAADALAAANK ΤΑΑΑΑΚΑΑΑΚ5-3διί"19> MAAAAKAAEAAAMAAANAAEAAATKAADAAASAAAAAIAAIAEAAEAAEAAATKSANVAAAAAATSAAAAAKATA NAAAAASAAAAAAAAVA {本念涑珐舷涔:1s)_ SDAPAKAAAATAAAAKAAAEATAAAAAKAAADTKAKAAR {4*238143-- MDAPAKAAAA TAAAAKAAAEA TAAAAAKAAAA TKAGAAR5238浪 %:16) SDAPA^AAAA TAAAAKAAAmA TKAAAAKAAAA TKAAAH {4-35*51:1- MAAATPAQ^AAATATAAAAAAASAAAAAAATTASTAAKVSAGAAATAAAAVVAAKNAATAVAPNTG AITAATAASATAAAAAKAAQATADAAATKAAAAAVTSKAAAALPf^l (^'-^'-赛择'-1-_ MAAATPAQRAAATATAAAAAAASAAAAAAATTASTAAK<SAGAAATAAAA<VAAKNAATA<APNTG AITAATAASATAAAAAKAAQATADAAATKAAAAAVTSKAAAAALAAl.(拳芝|3'-赛^:13)_ MDAPARAAAK TAADALAAANK TMDAAAAAAAA (本-迮珐*5%:-) SDGETPAGifRIAAAAAlAAK TAADAAAKAAAIAAAAA523珐麻"11) SDGETPAQKAA RLAAAAAALAAK TAADAAAKAAA1AAAAA c^-355^-3 SDAPA1AAAK TAADALAAAKK TAADAAAAAAKP5-38*"3 MNGETPAQKAA^LAAAAALAAK TAADAAAKAAAKAAAIAAAAASA (染念355"·2 MNAPARAAAK TAADALAAAKK TAADAAAAAAA (^-3s6s:7) D TASDAAAAAAA TAAAAKAAAEK ΤΑ 刀 DAAAAAAA TAAAA335-3ssst6) D TASDAAAAAAATAAAAAKAAAD TAAAAAKAAAD TAAAAAEAAAA TAR {堆23853:- X 一 D PAAFIA A A A Ai * {本-35*5^:- D TASDAAAAAAA TAATAAAAAAA TAVTAAKAAAL TAANAAAAAAA TAAAA^G AA^G {^2asss:3) D TASDAAAAAAL TAANAKAAAKL TADNAAAAAAATAX {^-3^^51:2) D TASDAAAAAAL TAANAKAAAEL TAANAAAAAAA TAf^/ffJ^^^itlKSEQ ID NO:1) 8 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 上面表1中所顯示的結果是參考下列文獻的記載以及 NCBI網站的資料庫而予以彙整出的: 1. R.P. Evans and G.L. Fletcher, Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular 5 Enzymology, 11 June 2001, 1547 (2):235-244 ; 2. 關於5a-狀蛋白質(5a-like protein)的資料是參考已;8· Marshall et al. (2005),《/.及·〇/. CTzew.,May 6, 2005, 280 (18): 17920-17929 ; 3. 關於La-AFP的胺基酸序列,參見NCBI寄存編號 10 AAR22528 (NCBI accession number: AAR22528); 4. 關於Lg-AFP2的胺基酸序列,參見NCBI寄存編號 AAR22529 ;以及 5. 關於wfsAFP3以及長角杜父魚(Longhorn sculpin)的資料 是參考W.K Low ei α/. (2001),·/.所〇/. CT^m·,276 (15): 15 11582-11589。 先前的研究顯示,第I型抗凍蛋白當中的蘇胺酸 (threonine,Thr)殘基在該第I型抗凍蛋白與冰晶的結合上扮 廣一重要魚色(JCC· Chou (1992),丄 Mol. Biol., 223:509-517·, Margaret M. Harding et al. (1999), Eur. J. Biochem., 264, 20 Chou提議:該第I型抗凍蛋白中同一側的Thr殘基 上的羥基基團會與冰格(ice lattice)的【0112】方向的氧原子 結合,進而抑制或延遲冰晶成長。由於第I型抗凍蛋白與冰 晶結合形成氫鍵的型式類似拉鍊,該結合模式被稱為“拉鍊 般模型(zipper-like model),’(尺_C. C/zom, (7PP2),同上述)。此 9 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 外,H. Chao等人發現’當第I型抗凍蛋白内的重複胺基酸單 元數目愈多時,該第I型抗凍蛋白降低水的凍結點的能力愈 隹(H. Chao et al. (1996),Protein science, 5:1150-1156)。 抗凍蛋白能使冰晶成型機制減緩,而利用此特性,抗 5凍蛋白的應用領域極廣。例如,在組織培養物或細胞株的 保存上,添加抗凍蛋白可使冷凍後的存活率提高、使胞器 受損程度降低,使膜通透性保存保持良好(及α/ (1991),Biochem. Biophys. Res. Comm·, 180:566-571、。氙、表 蛋白也可供用於卵子與精子的保存,以及於外科手術中藉 10由冰晶的“刀型”來取代雷射刀的作用(//ew, CZ. am/汾《私 D.S.C. (1992),Journal of Biochemistry, 203:33-42、。也外, 在食品工業的應用上,於冰淇淋的製造中添加抗凍蛋白可 使冰淇淋的口感(palatability)以及品質更佳(F從吵兄五 Yeh, Y. (1998), Trends in Food Sci. and Technol, 15 而於肉品的製造中添加抗凍蛋白可使冷凍肉品 的品質提高(S.R_ Payne et a丨(J994), Meat Science, 37··42Ρ-43§)。另外,目前許多製品需經冷凍冷藏來運銷, 而應用抗/東蛋白可以避免該等製品於運銷過程中因為溫度 的變化而品質變差。 20 目前抗凍蛋白的取得方式主要是從魚體分離純化出抗 凍蛋白,這必須配合漁業以致來源不穩定,其價格視蛋白 質的純度而定,每公克要價可達大約5〇〇美元左右,價錢並 不便宜,而若是採用現有合成技術甚至可達1〇倍價錢 (httP://www.preparedf〇〇ds_C〇m)。Fletche^ 人評估:自然界 10 1321567 修正日期:98年10月I曰 第095118228號專利申請案說明書修正頁 來源的魚血抗凍蛋白約為2g/L血漿,因此,1〇〇公噸(metric tons)的魚體(以血漿佔〇·5%體重計)僅能獲得丨Kg的抗凍蛋 白。預估使用於腫瘤切除的抗凍蛋白數量為5〜1〇 mg/mN 依此來计算抗凍蛋白的年需量,需有5〇〇〜1〇〇〇公噸的魚體 方能充分供應所需。至於冰淇淋工業,預估使用於冰淇淋 製造的抗凍蛋白的數量為0.1 mg/L,依此來計算抗凍蛋白的 年需量,需有150,000公噸的魚體方能充分供應所需。此 外,抗凍蛋白的相關應用仍在開發中。明顯地,自然界來 源的魚血抗凍蛋白並不足以供應未來所需(GZ 以 10 al. (1999),Chemtech 30: 17-28、。 另一種供應抗凍蛋白的方式是利用胜肽合成儀 (peptide synthesizer)來合成,但此法所需的成本過高。因 此,供應抗凍蛋白的最理想方式應是遺傳工程技術,此技 術省時、省錢且無季節與地域上的限制。 15 有關於抗凍蛋白的基因工程研究,以基因轉殖動物 (transgenic animal)較多,例如,經基因轉殖成功的魚類, 其耐寒性被提高,這方面的實例有,例如,金魚(goldfish)(兄 Wang et al. (1995), Mol. Mar. Biol. Biotechnol., Mar. 1995, 萃、娃魚(Salmon)(CHew ei a/· (79夕5J, 〇/ 20 Fish Biology.47:1-19、專。J.M. Logsdon, et al. (1997), Proc. ΑΓαί/. jcac?· 進一步探討抗凍蛋白基因的 分子級演化(molecular evolution)。而在抗床蛋白的基因工 程研究上,也有基因轉殖植物的相關報導,例如,參見从 Holmberg et al.,Gene, September 5, 2001, 275(1): 115-24。 11 i 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年丨〇月1日 想要大量生產抗凍蛋白,可考慮以培養的細胞(cuhured cells)或是經基因工程化的微生物(genetic_engineered microorganisms)來生產。關於培養的細胞,要建立來自魚 類身體各部位的細胞培養物的難易程度各異,而且各種抗 5 凍蛋白的表現過程在真核細胞内的調控是相當複雜的,常 需要有激素(hormones)等的刺激來提升產量。此外,抗凍蛋 白的蛋白加工機制(protein processing mechanism)複雜,需 經多重胞器(multi-organelles)處理並運輸通過細胞膜而且 產量並不高。 10 關於經基因工程化的微生物,I.D. Peters等人建構一個 半合成的寒冬比目魚抗;東前驅蛋白(semiSynthetic winter flounder antifreeze proptein,pro-AFP)編碼區域(coding region),並將該編碼區域插入至一個iacZ表現載體内,再以 所形成的重組型表現載體來轉形大腸桿菌細胞。由此所得 15 到的經轉形的大腸桿菌細胞(transformed cells of五· co/i)會 生成一帶有pro-AFP與/3 -gal領域(-gal domain)的融合蛋 白質(fusion protein),亦即冷-gal-pro-AFP (/·Ζλ Peier·?, ei α/· (1989),Protein Engineering, 3:145-15Γ)。 H丄.Jing等人建構一帶有一嵌合型AFP/CAT (或 20 pr〇AFP/CAT) cDNA 的表現載體,其中 AFP (或 proAFP) cDNA在架構上被融合至CAT報導基因的5·-端(was fused, in frame,to the5’-end of the CAT reporter gene),並以該表現載 體來轉形大腸桿菌。但是,由此所得到的經轉形的大腸桿 菌的被測得僅有呈融合形式的AFP (或proAFP)的低位準表 12 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 現(low level expression) ’而且被生成的融合蛋白質均位在 菌體内,而不易於回收與純化(//丄力·%以α/·),57π·PS 0.56 0.60 0.68 SDAPAKAAAK TAADAKAAAAK TAADALAAANK ΤΑΑΑΑΚΑΑΑΚ5-3διί " 19 > MAAAAKAAEAAAMAAANAAEAAATKAADAAASAAAAAIAAIAEAAEAAEAAATKSANVAAAAAATSAAAAAKATA NAAAAASAAAAAAAAVA {present study Su enamel hull cen: 1s) _ SDAPAKAAAATAAAAKAAAEATAAAAAKAAADTKAKAAR {4 * 238143-- MDAPAKAAAA TAAAAKAAAEA TAAAAAKAAAA TKAGAAR5238 waves%: 16) SDAPA ^ AAAA TAAAAKAAAmA TKAAAAKAAAA TKAAAH {4 -35 * 51: 1- MAAATPAQ ^ AAATATAAAAAAASAAAAAAATTASTAAKVSAGAAATAAAAVVAAKNAATAVAPNTG AITAATAASATAAAAAKAAQATADAAATKAAAAAVTSKAAAALPf ^ l (^ '- ^' - race Optional '-1-_ MAAATPAQRAAATATAAAAAAASAAAAAAATTASTAAK < SAGAAATAAAA < VAAKNAATA < APNTG AITAATAASATAAAAAKAAQATADAAATKAAAAAVTSKAAAAALAAl (fist Chicago | 3'-race ^: 13) _ MDAPARAAAK. TAADALAAANK TMDAAAAAAAA (本-迮珐*5%:-) SDGETPAGifRIAAAAAlAAK TAADAAAKAAAIAAAAA523珐麻"11) SDGETPAQKAA RLAAAAAALAAK TAADAAAKAAA1AAAAA c^-355^-3 SDAPA1AAAK TAADALAAAKK TAADAAAAAAKP5-38*"3 MNGETPAQKAA^LAAAAALAAK TAADAAAKAAAKAAAIAAAAASA (Stained 355" 2 MNAPARAAAK TAADALAAAKK TAADAAAAAAA (^-3s6s:7) D TASDAAAAAAA TA AAAKAAAEK ΤΑ knife DAAAAAAA TAAAA335-3ssst6) D TASDAAAAAAATAAAAAKAAAD TAAAAAKAAAD TAAAAAEAAAA TAR {heap 23853:- X a D PAAFIA AAA Ai * {本-35*5^:- D TASDAAAAAAA TAATAAAAAAA TAVTAAKAAAL TAANAAAAAAA TAAAA^G AA^G {^2asss:3 D TASDAAAAAAL TAANAKAAAKL TADNAAAAAAATAX {^-3^^51:2) D TASDAAAAAAL TAANAKAAAEL TAANAAAAAAA TAf^/ffJ^^^itlKSEQ ID NO:1) 8 1321567 Patent Application No. 095118228 Revision Date Amendment Date: October 1998 1. The results shown in Table 1 above are extracted by reference to the following literature and the database of the NCBI website: 1. RP Evans and GL Fletcher, Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular 5 Enzymology , 11 June 2001, 1547 (2): 235-244; 2. Information on 5a-like proteins is a reference; 8 Marshall et al. (2005), "/. and · 〇 / CTzew., May 6, 2005, 280 (18): 17920-17929; 3. For the amino acid sequence of La-AFP, see NCBI Accession No. 10 AAR22528 (NCBI accession number: AAR22528); 4. About Lg-AFP2 Amino acid sequence See NCBI Accession No. AAR22529; and 5. For information on wfsAFP3 and Longhorn sculpin, refer to WK Low ei α/. (2001),··.〇/. CT^m·,276 (15 ): 15 11582-11589. Previous studies have shown that threonine (Thr) residues in type I antifreeze proteins play an important role in the binding of this type I antifreeze protein to ice crystals (JCC·Chou (1992),丄Mol. Biol., 223:509-517·, Margaret M. Harding et al. (1999), Eur. J. Biochem., 264, 20 Chou Proposal: Thr Residue on the same side of the Type I antifreeze protein The hydroxyl group on the base will bind to the oxygen atom in the [0112] direction of the ice lattice, thereby inhibiting or delaying the growth of the ice crystal. Since the type I antifreeze protein combines with the ice crystal to form a hydrogen bond, the type is similar to a zipper. The binding mode is called a "zipper-like model," (foot _C. C/zom, (7PP2), the same as above.) This 9 1321567 patent application specification revision page is amended: On October 1st, 1998, H. Chao et al. found that the greater the number of repeating amino acid units in type I antifreeze proteins, the greater the ability of the type I antifreeze protein to lower the freezing point of water. (H. Chao et al. (1996), Protein Science, 5: 1150-1156). Antifreeze proteins slow down the formation of ice crystals, and use this The application of anti-frozen protein is extremely wide. For example, in the preservation of tissue culture or cell strain, the addition of antifreeze protein can improve the survival rate after freezing, reduce the damage of the organelle, and make the membrane permeability. Preservation is good (and α/ (1991), Biochem. Biophys. Res. Comm·, 180:566-571, 氙, epiprotein is also available for egg and sperm preservation, and by surgery 10 by ice crystal The "knife type" replaces the role of the laser knife (//ew, CZ. am/汾 "Private DSC (1992), Journal of Biochemistry, 203: 33-42, also, in the food industry, Adding antifreeze protein to the manufacture of ice cream can make the palatability and quality of the ice cream better (F from No. 5, Yeh, Y. (1998), Trends in Food Sci. and Technol, 15 The addition of antifreeze protein can improve the quality of frozen meat (S.R_ Payne et a丨(J994), Meat Science, 37·42Ρ-43§). In addition, many products need to be refrigerated and sold. The use of anti-/east protein can avoid the quality of these products during the transportation process due to temperature changes. Getting worse. 20 At present, the antifreeze protein is obtained by separating and purifying the antifreeze protein from the fish body. This must be compatible with the fishery and the source is unstable. The price depends on the purity of the protein. The price per gram can reach about 5 US dollars. The price is not cheap, and even if it is using existing synthetic technology, it can even reach 1 times the price (httP://www.preparedf〇〇ds_C〇m). Fletche^ Person Evaluation: Nature 10 1321567 Revision Date: October 1998 I曰 No. 095118228 Patent Application Specification Amendment Page The fish blood antifreeze protein is about 2g/L plasma, therefore, 1 metric tons The fish body (based on plasma 〇·5% body weight) can only obtain 抗Kg antifreeze protein. The estimated amount of antifreeze protein used for tumor resection is 5~1〇mg/mN. Calculate the annual requirement of antifreeze protein. It is necessary to have 5〇〇~1〇〇〇 metric tons of fish to fully supply the fish. need. As for the ice cream industry, the amount of antifreeze protein used in ice cream manufacturing is estimated to be 0.1 mg/L, and the annual demand for antifreeze protein is calculated accordingly, and 150,000 metric tons of fish is required to fully supply the required amount. In addition, related applications of antifreeze proteins are still under development. Obviously, fish-free antifreeze proteins from natural sources are not sufficient for future needs (GZ to 10 al. (1999), Chemtech 30: 17-28. Another way to supply antifreeze proteins is to use peptide synthesizers. (peptide synthesizer) to synthesize, but the cost of this method is too high. Therefore, the most ideal way to supply antifreeze protein should be genetic engineering technology, which saves time, saves money and has no seasonal and geographical restrictions. Regarding genetic engineering research on antifreeze proteins, there are many transgenic animals, for example, fish that have been successfully genetically transferred, and their cold tolerance is improved, for example, goldfish (goldfish) (Brothers et al. (1995), Mol. Mar. Biol. Biotechnol., Mar. 1995, Cui, Salmon (CHew ei a/· (79 5 5J, 〇 / 20 Fish Biology. 47:1) -19, special. JM Logsdon, et al. (1997), Proc. ΑΓαί/. jcac?· Further explore the molecular evolution of antifreeze protein genes. However, in the genetic engineering of anti-bed protein, there are also Related reports on genetically transgenic plants, see, for example, from Holmberg Et al., Gene, September 5, 2001, 275(1): 115-24. 11 i 1321567 Patent Revision No. 095118228 Revision Date: January 1st, 1998, wants to mass produce antifreeze proteins, It can be considered to be produced by cuhured cells or genetically engineered microorganisms. With regard to cultured cells, it is difficult to establish cell cultures from various parts of the fish body, and various antibiotics 5 The regulation of frozen protein expression in eukaryotic cells is quite complex, and stimulations such as hormones are often needed to increase yield. In addition, the protein processing mechanism of antifreeze proteins is complex and requires Multi-organelles are processed and transported through the cell membrane and yield is not high. 10 For genetically engineered microorganisms, ID Peters et al. constructed a semi-synthetic winter flounder resistance; semiSynthetic winter flounder antifreeze proptein , pro-AFP) coding region, and inserting the coding region into an iacZ representation Inside, then formed recombinant expression vector Transformation to E. coli cells. The thus obtained transformed E. coli cells (transformed cells of quinolol) produce a fusion protein with a pro-AFP and a -gal domain (-gal domain). That is, cold-gal-pro-AFP (/·Ζλ Peier·?, ei α/· (1989), Protein Engineering, 3: 145-15Γ). H丄.Jing et al. constructed a expression vector with a chimeric AFP/CAT (or 20 pr〇AFP/CAT) cDNA in which the AFP (or proAFP) cDNA was structurally fused to the 5'-end of the CAT reporter gene. (was fused, in frame, to the 5'-end of the CAT reporter gene), and the E. coli was transformed with the expression vector. However, the transduced Escherichia coli thus obtained was measured only in the form of a fusion form of AFP (or proAFP). Table 13 1321567 Patent Application Publication No. 095118228 Revision Date: October 1998 1 low level expression 'and the resulting fusion protein is located in the bacteria, not easy to recover and purify (/ / force ·% with α / ·), 57π ·
Yan Sheng Wu Xue Βαο· 1995 Μακ,28(1):77-83)。 R.G. Solomon與R. Appels使用一可誘導的T7聚合酶轉 5 錄表現糸統(inducible Τ7 polymerase transcription expression system),而成功地於大腸桿菌内表現一種第i型 抗凍蛋白的重組型變異體(recombinant variant),rAFP。該 重組型蛋白呈包涵體(inclusion bodies)的形式而於細菌體 内蓄積至高位準,而一簡單且快速的純化操作程序 10 (purification protocol)被設計出來以供該重組型第I型抗凍 蛋白的純化»So/omo« irnd Λ. 々τρΑ (7PP9」,iVoiezw Εχρκ Purif·, 16:53-62、。 亦有人嘗試將抗凍蛋白編碼基因轉形至酵母菌細胞 内。R. Mckown與G.J. Warren發現:於酵母菌細胞内表現一 15 嵌合型抗凍蛋白,可使酵母菌細胞在快速冷凍後的存活率 提高兩倍(R. Mckown and G.J. Warren,(J99J), Cryobio!·, 28:474-482)。 此外,Driedonk等人以分離自極地魚類(polar fish)寒冬 比目魚(Piewdop/ewrowec/M·? americrawers)的第 I型抗;東蛋白 20 AFP6的37個胺基酸作為模版,並使用酵母菌的偏好密碼子 (preferred codons)而化學地合成出該第I型抗康蛋白的編碼 基因,並將該編碼基因植入至一游離表現載體(episomal expression vector)與一多重複本插入質體(multicopy integration vector)内,並由可誘導的起動子GA67來誘發 13 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 (induce)表現。結果’在所獲得到的轉形體(transf〇rmant) 中,表現位準可達大約100 mg/L。但是,由於表現產物的 蛋白水解加工(proteolytic processing)不完全,所獲得的表 現產物是嵌合型蛋白或AFP寡聚體(7M W α/., 5 Yeast,July, 1995, II (9):849-864)。 在授予 Thomas Caceci 等人的 US 5,925,540 與 US 5,932,697中揭示合成的抗;東胜肽,它具有於該二件美國專 利案的說明書所檢附的圖4内所示的胺基酸序列,或是具有 於圖4内所示的特定具π個胺基酸殘基的重複單元。該二件 10美國專利案也揭示用以於細菌内表現該抗凍胜肽的合成基 因。但是,從該二件美國專利案的說明書内所提供的實施 例來看,Thomas Caceci等人所設計的合成的抗凍胜肽與編 碼基因都還有待改進之處。 在授予Choy L. Hew的US 6,429,293中揭示源自於短角 15 杜父魚(sh〇rthorn sculpin)的經分離的杜父魚型胞内抗凍蛋 白(sculpin-type intracellular AFPs)及其對應的核酸。 雖然已有上述的文獻報導與專利’參於現今自然界來 源的魚血抗凍蛋白供應量並不穩定且價格過高,而有不足 以供應未來所需的問題’本技藝仍然有一需要去研發出可 20用以大量生產具優異抗凍活性的抗凍蛋白的新技術。為達 此目的,遺傳工程技術因為省時、省錢且無季節與地域上 的限制,而被認為會是一理想的工具。 C發明内容3 發明概要 14 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 I * 於本發明中,申請人利用生物技術領域現有的知識與 技術而設計出抗凍效果可與天然的抗凍蛋白相比擬的新穎 抗珠蛋白類似物(antifreeze protein analogues),它們可以高 產率(high yield)被生成而且易於純化,同時具有高pH值安 5 定定性(high pH stability)以及高熱安定性(high thermal stability)。本發明的抗凍蛋白類似物包含有一以式(I)來表示 的胺基酸序列: Y-P- [ A-R] a-W-Z ⑴ 其中: 10 a是一個由1至20的整數; 在各個-[A-R]-内的R獨立地表示一個直接的鍵結(direct bond)或一個包含有3至15個胺基酸殘基的間隔序列(spacer sequence) 在各個-[A-R]-内的A獨立地表示一個會形成α -螺旋結構的 15 -Qm-,其中: m是一個3至20的整數; Q是一個包含有11個胺基酸殘基並以式(II)來表示的胺 基酸重複單元: -Xl-X2-X3-X4-X5-X6-X7-X8-X9-Xl0_Xn_ (II) 20 其中: 在各個Q内的Χι是一蘇胺酸(threonine,Thr),或者有 至少一個Q内的Χι可被替換為纈胺酸(valine,Val); 在各個Q内的X4是一選自於天冬醯胺酸(asparagine, Asn)與天冬胺酸(aspartic acid,Asp)的胺基酸殘 15 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 基’或者有至少一個Q内的X4可被替換為一選自於 下列群組中的胺基酸:蘇胺酸、纈胺酸以及丙胺酸; 有至少一個Q内的Χό與X1()是一組可於胺基酸序列 内形成鹽橋以安定〇:-螺旋結構的胺基酸殘基,其 5 中乂6與Χίο當中有一者是一選自於離胺酸(IySine,Yan Sheng Wu Xue Βαο· 1995 Μακ,28(1):77-83). RG Solomon and R. Appels used an inducible 77 polymerase transcription expression system to successfully display a recombinant variant of the i-type antifreeze protein in E. coli ( Recombinant variant), rAFP. The recombinant protein is in the form of inclusion bodies and accumulates in the bacteria to a high level, and a simple and rapid purification protocol is designed for the recombinant type I to freeze. Purification of protein »So/omo« irnd Λ. 々τρΑ (7PP9", iVoiezw Εχρκ Purif·, 16:53-62. Also attempts to transform the antifreeze protein encoding gene into yeast cells. R. Mckown and GJ Warren found that a 15-chimeric antifreeze protein in yeast cells doubled the survival rate of yeast cells after rapid freezing (R. Mckown and GJ Warren, (J99J), Cryobio! 28: 474-482) In addition, Dr. Leondonk et al. used the 37 amino acids of East Protein 20 AFP6 isolated from the polar fish (Piewdop/ewrowec/M·? americrawers) The template is used, and the coding gene of the type I anti-combin protein is chemically synthesized using the preferred codons of the yeast, and the coding gene is implanted into an episomal expression vector and a plurality of Repeat this Inserted into the plastid (multicopy integration vector) and induced by the inducible promoter GA67 13 1321567 Patent No. 095118228 Patent Description Amendment Page Revision Period: October 1 曰 (induce) performance. In the obtained transf〇rmant, the expression level can reach about 100 mg/L. However, since the proteolytic processing of the performance product is incomplete, the obtained performance product is a chimeric protein or AFP oligomers (7M W α/., 5 Yeast, July, 1995, II (9): 849-864). Synthetic anti-East peptides are disclosed in US 5,925,540 and US 5,932,697 to Thomas Caceci et al. It has the amino acid sequence shown in Figure 4 attached to the specification of the two U.S. patents, or the specific repeating unit having π amino acid residues shown in Figure 4. Two of the 10 U.S. patents also disclose synthetic genes for use in bacteria to express the antifreeze peptide. However, from the examples provided in the specification of the two U.S. patents, Thomas Caceci et al. Synthetic antifreeze peptide and coding base Because there is still room for improvement. The isolated sculpin-type intracellular AFPs derived from sh〇rthorn sculpin and their corresponding are disclosed in US 6,429,293 to Choy L. Hew. Nucleic acid. Although the above-mentioned literature reports and patents are not stable and expensive in the supply of fish blood antifreeze proteins from natural sources today, and there are insufficient problems to supply the future. The art still needs to be developed. It can be used to mass produce new technologies for antifreeze proteins with excellent antifreeze activity. To this end, genetic engineering technology is considered an ideal tool because it saves time, money, and no seasonal or geographical constraints. C SUMMARY OF THE INVENTION 3 SUMMARY OF THE INVENTION 14 1321567 Patent Application Publication No. 095118228 Revision Date: October 1998 1曰I * In the present invention, the applicant designs the antifreeze effect using the existing knowledge and technology in the field of biotechnology. Novel antifreeze protein analogues that can be compared to natural antifreeze proteins, which can be produced in high yield and are easy to purify, while having high pH stability. And high thermal stability. The antifreeze protein analog of the present invention comprises an amino acid sequence represented by the formula (I): YP-[AR] aWZ (1) wherein: 10 a is an integer from 1 to 20; in each -[AR]- The R inside means independently a direct bond or a spacer sequence containing 3 to 15 amino acid residues. A in each -[AR]- independently represents a meeting. Forming an α-helical structure of 15-Qm-, wherein: m is an integer from 3 to 20; Q is an amino acid repeating unit comprising 11 amino acid residues and represented by formula (II): Xl-X2-X3-X4-X5-X6-X7-X8-X9-Xl0_Xn_ (II) 20 where: Χι in each Q is a threonine (Thronine, Thr), or at least one Q within Q Can be replaced by valine (Val); X4 in each Q is an amino acid residue selected from asparagine (Asn) and aspartic acid (Asp) 15 1321567 Patent Publication No. 095118228, Revision of Amendment Page: October 1st, 1998, or X4 with at least one Q can be replaced with an amino acid selected from the following group Threonine, valine and alanine; having at least one quinone in X and X1() is a group of amino acid residues which form a salt bridge in the amino acid sequence to stabilize the 〇:-helical structure. 5 One of the middle 6 and Χίο is one selected from the group consisting of lysine (IySine,
Lys)與精胺酸(arginine, Arg)的胺基酸殘基,而另一 者是麩胺酸(glutamic acid, Glu); 在各個Q内的X丨丨是一白胺酸(leucine, Leu),或者有 至少一個Q内的又"可被替換為一選自於丙胺酸與 10 天冬胺酸的胺基酸;以及 在各個Q内的其餘胺基酸殘基是丙胺酸,該等丙胺 酸提供該抗;東蛋白類似物與冰晶(ice crystals)結合 之時所需要的凡得瓦力(van der Waals force),或者 有至少一個Q内的X3可被替換為一選自於下列所構 15 成的群組中的胺基酸:絲胺酸(serine,Ser)、纈胺 酸、天冬胺酸以及精胺酸; Y為不存在’或者表示一個蛋白質標幟(pr〇tein tag); P表示一或數個胺基酸殘基,其中直接鄰接於_[A_R]a_的胺 基酸殘基是一選自於天冬胺酸與麩胺酸的酸性胺基酸 20 (acidic amino acid); W表示一或數個胺基酸殘基,其中至少有一個胺基酸殘基 是一選自於精胺酸、組胺酸(histidine,His)與離胺酸的鹼性 胺基酸(basic amino acid);以及 Z為不存在’或者表示一個蛋白質標幡; 16 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 但有條件是該抗凍蛋白類似物非為一具有如序列辨識編 號:1所示的胺基酸序列的蛋白質。 在本發明的一個較佳具體例中,該抗凍蛋白類似物包 含有一以式(ΙΠ)來表示的胺基酸序列: 5 Y-P-A-[R-A]n-W-Z (in) 其中: η是0或一個由1至15的整數; R'於每次出現時獨立地是一個包含有3至15個胺基酸殘基 的間隔序列; 10 Α於每次出現時獨立地是一個會形成α -螺旋結構的-Q m -, 其中: m是一個3至20的整數; Q是一個包含有11個胺基酸殘基並以式(II)來表示的胺 基酸重複單元: 15 -Xi_X2_X3_X4_X5_X6_X7_X8_X9_Xi〇_Xi1- (II) 其中: 在各個Q内的X,是一蘇胺酸,或者有至少一個Q内 的X!可被替換為纈胺酸; 在各個Q内的X4是一選自於天冬醯胺酸與天冬胺酸 20 的胺基酸殘基,或者有至少一個Q内的X4可被替換 為一選自於下列群組中的胺基酸:蘇胺酸、纈胺酸 以及丙胺酸; 有至少一個Q内的X6與X10是一組可於胺基酸序列 内形成鹽橋以安定α-螺旋結構的胺基酸殘基,其 17 1321567 第095H8228號專利申請案說明書修正w 修正日期:98年10月!日 中X6與XlO g中有一者是一選自於離胺酸與精胺酸 的胺基酸殘基,而另一者是麩胺酸; 在各個Q内的Χιι是一白胺酸,或者有至少一個q内 的Xn可被替換為一選自於丙胺酸與天冬胺酸的胺 5 基酸;以及 在各個Q内的其餘胺基酸殘基是丙胺酸,該等丙胺 酸提供該抗凍蛋白類似物與冰晶結合之時所需要 的凡得瓦力,或者有至少一個Q内的χ3可被替換為 一選自於下列所構成的群組中的胺基酸:絲胺酸、 绳胺酸、天冬胺酸以及精胺酸; Y為不存在,或者表示一個蛋白質標幟; p表示一或數個胺基酸殘基,其中直接鄰接於_A_[R_A]n_的 胺基酸殘基是一選自於天冬胺酸與麩胺酸的酸性胺基酸; W表示一或數個胺基酸殘基,其中至少有一個胺基酸殘基 15 是一選自於精胺酸、組胺酸與離胺酸的鹼性胺基酸;以及 Z為不存在,或者表示一個蛋白質標織; 但有條件是該抗凍蛋白類似物非為一具有如序列辨識編 號:1 (SEQ ID NO: 1)所示的胺基酸序列的蛋白質。 而為了達到能穩定提供大量且價廉的抗凍蛋白的目 20的,申請人進一步根據該抗凍蛋白類似物的胺基酸序列來 推衍與製備含有一選定宿主細胞(selected host cells)的偏好 密碼子(preferred codons)的對應核酸編碼序列 (corresponding nucleic acid coding sequence),繼而製備一攜 帶有該核酸編碼序列的重組型表現載體(recombinant 18 1321567 第095118228號專利申請案說明書修正頁 ^正曰期:98年10月1曰 expression vector),再將所得到的重組型表現载體轉形至該 選定宿主細胞内,於是該核酸編碼序列於被轉形的宿主細 胞内被表現而導致所欲的抗凍蛋白類似物的生成。 本發明的實施被預期不會受限於使用特定的宿主細 5胞,而可以運用到各類的原核生物與真核生物細胞 (prokaryotic and eukaryotic cells)上,包括細菌(bacteria)、 酵母菌(yeasts)、真菌(fungi)、植物和動物的細胞等等並 可用來生成各種形式的蛋白質,包括位於細胞質㈣㈣顯) 或細胞間質(periplasmic space)内的蛋白質、位於細胞膜 10 (membrane)上或細胞外(extracellular)的蛋白質。在一較佳具 體例中’本發明所得到的經轉形的微生物宿主細胞可將被 表現的抗凍蛋白類似物分泌至細胞外,此為其他報告所無。 圖式簡單說明 本發明的上述以及其他目的、特徵與優點,在參照以 15下的詳細說明與較佳實施例和隨文檢附的圖式後,將變得 明顯,在圖式中: 圖1顯示依據本發明而被設計出的抗凍蛋白類似物1 (序列辨識編號:20)與抗凍蛋白類似物Γ (序列辨識編號:21) 的胺基酸序列,其中就抗凍蛋白類似物1而言,X1 = Gly, 2〇 X2= Ser ;以及就抗;東蛋白類似物1’而言’ Xj = Asp,X2 = Pro ; 圖2示意地例示說明利用重疊延伸聚合酶連鎖反應法 (overlapping-extension polymerase chain reaction, OEPCR) s 使用4個在它們的序列之間存在有互補性的引子(primers) 19 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 來生成一編碼圖1中所示的抗凍蛋白類似物1的PCR產物, 其中.標遗2與標號3分別表示模版引子(t:empiat;eprimer), 該二模版引子於它們的3,端處是彼此互補的;標號1表示用 於擴增標號2的模版引子之擴增引子(ampiifying primer)或 5 前向引子(forward primer);以及標號4表示用於擴增標號3 的模版引子之擴增引子或前向引子。當PCR反應開始時, 模版引子會先黏合並延伸(以3,至5,之DNA為模版,並從5, 到3’的方向開始延伸),因而生成全長的Dna。之後,擴增 引子以全長的DNA作為模版而開始大量擴增DNA片段; 10 圖3顯示一質體載體pRP的構建流程,其中:orM7,大 腸桿菌咖Ab co/ί)質體pACYC177的複製起始點; ori-pAM α 1 ’ 糞鍵球菌(iSVrepiococcM·? /aeca/h) DS-5 質體 ρΑΜ α 1的複製起始點;Apr,胺苄青黴素抗性基因 (ampicillin resistant gene); Tcr,四環素抗性基因(tetracycline 15 resistant gene) ; P,啟動子(promoter) ; SD,SD 序列 (Shine-Dalgarno sequence) ; pre,訊息胜月太(signal peptide) 的DNA編碼序列;pro,前序列(prosequence)的DNA編碼序 列,它與蛋白酶(protease)的摺疊(folding)以及分泌 (secretion)有關;成熟的(mature),成熟蛋白酶的DNA編瑪 20 序列;MCS,多重選殖位址(multiple cloning site) ; α/eC, 下游的DNA序列,它可能包含有轉錄終止子(terminator) 的序列; 圖4顯示使用表2中的引子並利用重疊延伸聚合酶連鎖 反應法(overlapping-extension polymerase chain reaction, 20 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 OEPCR)而被獲得的PCR產物的瓊脂糖凝膠電泳結果,其中 徑Μ : 100 bp DNA分子標記;徑1 :使用引子AFP·办/1/、 AFP-SS、AFP1與AFP2來進行OEPC靖得到的PCR產物;以及徑 2 :使用引子 AFP-价wffl、AFP-SS、AFP1 與AFP2來進行OEPCR 5 所得到的PCR產物; 圖5顯示一質體載體PRP-AFP的構建流程; 圖6顯示一質體載體PQE30-AFP的構建流程,其中: /acO,/ac啟動子;ori-pBR322,pBR322的複製起始點; pQE30終止子(pQE30 terminator),它包含有Lambda沁轉錄 10 終止區域(Lambda transcriptional termination region)以及 rmS T1轉錄終止區域丁丨 transcriptional termination region); 圖7顯示一質體載體pET12a-AsAFP的構建流程,其中 訊息胜肽是大腸桿菌外膜蛋白酶〇mpT的訊息胜肽; 15 圖8顯示一質體載體pET12a-OsAFP的構建流程; 圖9顯示由大腸桿菌轉形株(五.co" transformants)所生 成並經純化的重組型抗凍蛋白類似物的Tricine-SDS-PAGE 電泳結果,其中徑Μ:低分子量蛋白質標記;徑1 :從大腸 桿菌 M15(pREP4,pQE30-AFP)的細胞質部分(cytoplasm 2〇 fraction)純化出的蛋白質;徑2 :從大腸桿菌 BL21(DE3)(pET12a- AsAFP)的培養基部分(medium fraction) 純化出的蛋白質;徑3 :從大腸桿菌 BL21 (DE3 )(pET 12a-AsAFP)的細胞内可溶部分(intracellular soluble fraction)純化出的蛋白質;徑4 :從大腸桿菌 21 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 BL21(DE3)(pET12a-AsAFP)的細胞内不可溶部分 (intracellular insoluble fraction)純化出的蛋白質;徑 5:從大 腸桿菌BL21(DE3)(pET12a-OsAFP)的細胞内可溶部分純化 出的蛋白質;以及徑6 :從大腸桿菌BL21(DE3)(pET12a-5 OsAFP)的細胞内不可溶部分純化出的蛋白質;以及 圖10顯示依據本發明的重組型抗凍蛋白類似物所產生 的減少冰晶形成的效用,其中,A區(panel A):水;B區(panel B):含有8 Μ尿素(urea)的溶菌緩衝液(lySis buffer) ; C區 (panel C):從大腸桿菌M15(pREP4, pQE30-AFP)的細胞質部 10 分純化出的蛋白質;D區(panel D):從大腸桿菌 BL21(DE3)(pET12a-AsAFP)的培養基部分純化出的蛋白 質;E區(panel E):從大歸桿菌BL21(DE3)(pET12a-AsAFP) 的細胞内可溶部分純化出的蛋白質;F區(panel F):從大腸 桿菌BL21(DE3)(pET12a-AsAFP)的細胞内不可溶部分純化 15出的蛋白質;G區(panel G):從大腸桿菌BL21(DE3)(pET12a-OsAFP)的細胞内可溶部分純化出的蛋白質;以及η區(panei Η):從大腸桿菌81^21(0£3)(卩丑丁123-〇3入??)的細胞内不可 溶部分純化出的蛋白質; 圖11是一示意圖,它顯示3個依據本發明的抗束蛋白 20 (AFP)類似物 ΙΑ、2Α與3Α的表現載體pSPlAtag、pSP2Atag 與pSP3Atag的基因構成,其中:SD,SD序列;$,訊息胜 肽編碼DNA ; α力?,抗;東蛋白基因;以及,(His)6 DNA ; 圖12示意地例示說明利用聚合酶連鎖反應法(pcR),使 用被描述於下面實施例7的表5中所示的引子,並以 22 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 pET-12a-AsAFP或p-RP-AFP當中的AFPI基因作為模版,來 生成編碼依據本發明的3種具有不同重複胺基酸單元數目 的抗凍蛋白類似物ΙΑ、2A與3A的PCR產物,其中:π,訊 息胜肽編碼DNA ; <3力7,抗;東蛋白基因;以及,(His)6 5 DNA ; 圖13顯示大腸桿菌BL21(DE3)(pSPlAtag)、大腸桿菌 BL21(DE3)(pSP2Atag)與大腸桿菌 BL21(DE3)(pSP3Atag) 以1 mMIPTG予以誘導3小時之後,從培養基部分以及總細 胞胞溶物(total cell lysate)所收集的蛋白質的Tricine-SDS 10 PAGE分析結果; 圖14顯示大腸桿菌BL21(DE3)(pSPlAtag)、大腸桿菌 BL21(DE3)(pSP2Atag)與大腸桿菌 BL21(DE3)(pSP3Atag) 以1 mMIPTG予以誘導3小時之後,從培養基部分所純化的 重組型抗凍蛋白類似物ΙΑ、2A與3A的Tricine-SDS PAGE分 15 析結果,其中徑1 :來自大腸桿菌BL21(DE3)(pSPlAtag)的 培養基部分的重組型抗凍蛋白類似物1A;徑2 :來自大腸桿 菌BL21(DE3)(pSP2Atag)的培養基部分的重組型抗凍蛋白 類似物2A ;以及徑3 :來自大腸桿菌BL21(DE3)(pSP3Atag) 的培養基部分的重組型抗凍蛋白類似物3A ; 20 圖15顯示以抗凍蛋白(AFP)類似物ΙΑ、2A與3A的表現 載體pSPlAtag、pSP2Atag與pSP3Atag予以轉形的大腸桿菌 BL21(DE3)的細胞生長以及重組型抗凍蛋白類似物1A、2A 與3A的分泌產量; 圖16顯示重組型抗凍蛋白類似物1 a、2A與3A抑制冰晶 23 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 再結晶的能力分析結果,其中重組型抗凍蛋白類似物1A、 2A與3A的濃度均為400 pg/pL ; C是對照組(PBS緩衝液,50 mMNaH2P04,300 mMNaCl, pH8.0);以及CAFPI是一商業 販賣的第I型抗凍蛋白(A/F protein Canada Inc.),該蛋白質 5 是從寒帶魚類(cold ocean fish)的血液分離而得的,純度在 90〜99%間; 圖17顯示重組型抗凍蛋白類似物1A、2A與3A的單一冰 晶構形觀察結果,其中重組型抗;東蛋白類似物1A、2A與3 A 的濃度均為400 pg/pL ; C是對照組(PBS緩衝液,50 mM 10 NaH2P04, 300 mMNaCl,pH 8.0);以及CAFPI是一商業販賣 的第I型抗束蛋白(A/F protein Canada Inc.),該蛋白質是從 寒帶魚類(cold ocean fish)的血液分離而得的,純度在 90~99% 間; 圖18顯示重組型抗凍蛋白類似物ία、2A與3A的pH值 15 安定性,其中重組型抗凍蛋白類似物ΙΑ、2A與3A的濃度均 為400 pg/pL;以及C是對照組(PBS緩衝液,50mMNaH2PO4, 300 mM NaCl, pH 8.0); 圖19顯示重組型抗凍蛋白類似物丨a、2A與3A的熱安定 性,其中重組型抗凍蛋白類似物1A、2A與3A的濃度均為400 20 叩/叫;以及C是對照組(PB S緩衝液,5 0 mM NaH2P〇4, 3 00 mM NaCl,pH 8.0);以及 圖20顯示重組型抗凍蛋白類似物ΙΑ、2A與3A的最小抑 制濃度(minimal inhibition concentration,MIC)。 t:實施方式;1 24 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 較佳實施例的詳細說明(發明的詳細說明) 第I型抗;東蛋白的來源有右鲽科的魚類(right-eye flounders,尸、杜父魚(sculpins)、蝸牛魚 (snailfish)等的血液或表皮,而現今已知的第j型抗凍蛋白的 5胺基酸序列被列示於如前述的表1中。經分析而歸納出該等 已知的第I型抗凍蛋白具有下列的結構與功能特性:構形為 α-螺旋結構,分子量在3〜10 kDa之間,主要是由具11個胺 基酸殘基的重複單元“Thr-X2-Asx-X7”所組成,其中X多為 Ala ’而Asx為Asp或Asn,位在胺基酸重複單元内的Thr殘基 1〇 在第I型抗凍蛋白與冰晶的結合上扮演一個重要角色,而且 當胺基酸重複單元的數目愈多時,第I型抗凍蛋白降低凍結 點的能力愈佳。 根據以上所述,保留第I型抗凍蛋白的α -螺旋構形以及 胺基酸重複單元内的重要功能相關的Thr殘基,應可構築出 15 具有抗凍特性的蛋白質類似物。此外,增加抗凍蛋白内的 胺基酸重複單元的數目’或是安定抗凍蛋白的α·螺旋構 形,應可達致提高抗凍蛋白抑制冰晶成長的能力的目的。 於是’申請人以第I型抗凍蛋白的結構功能特性為主要構想 依據’而於本發明中研發出一種新穎的抗凍蛋白類似物。 20 依據本發明的技術構想’該抗凍蛋白類似物在一級結 構的設計上是以一個具有11個胺基酸殘基的重複單元 “Thr-Xz-Asx-X7”為基礎,俾以保留具抗凍特性的必要胺基 酸序列(essential amino acid sequence with antifreeze characteristics) ’並於該合成的抗凍蛋白類似物的n端及c 25 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年1〇月!曰 鈿處‘入可女疋-螺知結構的胺基酸殘基,以及於該胺基 酸重複單70内導人可形成鹽橋的胺基酸殘基,並增加該胺 基酸重複單7L的數目’藉此,該抗祕自類似物比天然的 抗凍蛋白更為安定而且抗凍效果相當或更佳。 於是,本發明提供一種抗凍蛋白類似物,其包含有一 以式⑴來表不的胺基酸序列: Y-P-[A-R]a_W-Z ⑴ 其中: a是一個由1至20的整數; 10在各個-[A-R]-内的R獨立地表示一個直接的鍵結(direct bond)或一個包含有3至15個胺基酸殘基的間隔序列(spacer sequence); 在各個-[A-R]-内的A獨立地表示一個會形成螺旋結構的 -Qm-,其中: 15 m是一個3至20的整數; Q是一個包含有11個胺基酸殘基並以式(11)來表示的胺 基酸重複單元:Lys) with amino acid residues of arginine (Arg), and the other is glutamic acid (Glu); X丨丨 in each Q is a leucine, Leu ), or having at least one Q in the " can be replaced with an amino acid selected from the group consisting of alanine and 10 aspartic acid; and the remaining amino acid residues in each Q are alanine, The alanine provides the resistance; the van der Waals force required for the combination of the eastern protein analog with the ice crystals, or the X3 of at least one Q can be replaced by a Amino acids in the following 15 groups: serine (Ser), proline, aspartic acid, and arginine; Y is absent or represents a protein marker (pr〇 Tein tag); P represents one or several amino acid residues, wherein the amino acid residue directly adjacent to _[A_R]a_ is an acidic amino acid selected from aspartic acid and glutamic acid 20 (acidic amino acid); W represents one or several amino acid residues, wherein at least one amino acid residue is selected from the group consisting of arginine, histidine (His) and Acidic basic amino acid; and Z is absent or represents a protein standard; 16 1321567 Patent Application Publication No. 095118228 Revision Date: October 1st, 1998, but conditional The antifreeze protein analog is not a protein having an amino acid sequence as shown in SEQ ID NO: 1. In a preferred embodiment of the invention, the antifreeze protein analog comprises an amino acid sequence represented by the formula: 5 YPA-[RA]nWZ (in) wherein: η is 0 or one An integer from 1 to 15; R' is, at each occurrence, independently a spacer sequence comprising from 3 to 15 amino acid residues; 10 Α each occurrence is independently an alpha-helical structure -Q m -, wherein: m is an integer from 3 to 20; Q is an amino acid repeating unit comprising 11 amino acid residues and represented by formula (II): 15 -Xi_X2_X3_X4_X5_X6_X7_X8_X9_Xi_Xi_Xi1- (II) wherein: X in each Q is a sulphonic acid, or X at least one Q can be replaced with valine; X4 in each Q is selected from aspartame The amino acid residue of the acid and aspartic acid 20, or X4 in at least one Q, may be replaced by an amino acid selected from the group consisting of sulphonic acid, proline and alanine; X6 and X10 in at least one Q are a group of amino acid residues which form a salt bridge in the amino acid sequence to stabilize the α-helical structure, 17 1321567 095H8228 Patent Application Specification Revision w Revision Date: October 1998! One of X6 and XlO g in the day is an amino acid residue selected from the group consisting of lysine and arginine, and the other is glutamic acid; Χιι in each Q is a leucine, or Xn in at least one q may be replaced with an amine 5-based acid selected from the group consisting of alanine and aspartic acid; and the remaining amino acid residues in each Q are alanine, the alanine providing the The vanguard force required for the combination of the antifreeze protein analog with the ice crystal, or the at least one Q in the Q can be replaced by an amino acid selected from the group consisting of: serine, Resveric acid, aspartic acid, and arginine; Y is absent or represents a protein marker; p represents one or several amino acid residues, which are directly adjacent to the amine of _A_[R_A]n_ The acid residue is an acidic amino acid selected from the group consisting of aspartic acid and glutamic acid; W represents one or several amino acid residues, wherein at least one of the amino acid residues 15 is selected from a basic amino acid of arginine, histidine and lysine; and Z is absent or represents a protein weave; but conditionally the antifreeze The white analog is not a protein having an amino acid sequence as shown in Sequence Identification No.: 1 (SEQ ID NO: 1). In order to achieve the goal of stably providing a large amount of inexpensive antifreeze protein, the applicant further derives and prepares a selected host cell based on the amino acid sequence of the antifreeze protein analog. A corresponding nucleic acid coding sequence of a preferred codons, followed by preparation of a recombinant expression vector carrying the nucleic acid coding sequence (recombinant 18 1321567 095118228 patent application revision page ^正曰Period: October 1 曰 expression vector), and the resulting recombinant expression vector is transformed into the selected host cell, and the nucleic acid coding sequence is expressed in the transformed host cell to cause desired Generation of antifreeze protein analogs. The practice of the present invention is not intended to be limited to the use of specific host cells, but can be applied to a variety of prokaryotic and eukaryotic cells, including bacteria, yeast ( Yeasts, fungi, plant and animal cells, etc. and can be used to generate various forms of proteins, including proteins located in the cytoplasmic (four) (four) or periplasmic space, on the membrane 10 or Extracellular protein. In a preferred embodiment, the transformed microbial host cell obtained by the present invention secretes the expressed antifreeze protein analog to the outside of the cell, which is not reported otherwise. The above and other objects, features, and advantages of the present invention will be apparent from the description of the accompanying claims appended claims 1 shows an amino acid sequence of an antifreeze protein analog 1 (SEQ ID NO: 20) and an antifreeze protein analog Γ (SEQ ID NO: 21) designed according to the present invention, wherein an antifreeze protein analog 1 , X1 = Gly, 2〇X2 = Ser ; and in terms of resistance; East protein analog 1 ''Xj = Asp, X2 = Pro; Figure 2 schematically illustrates the use of overlap extension polymerase chain reaction method ( Overlapping-extension polymerase chain reaction, OEPCR) s use of four primers that are complementary between their sequences. 19 1321567 Revision No. 095118228 Patent Description Amendment Page Revision: October 1st, 1998 Generating a PCR product encoding the antifreeze protein analog 1 shown in Figure 1, wherein the label 2 and the label 3 respectively represent a template primer (t:empiat;eprimer), the two template primers at their 3, end Complement each other; the number 1 indicates An amplification primer or a 5 forward primer for the template primer of the amplification label 2; and 4 indicates an amplification primer or a forward primer for amplifying the template primer of the label 3. When the PCR reaction begins, the template primer will first bind and extend (3, to 5, the DNA as a template and extend from 5, to 3'), thus generating a full-length DNA. After that, the amplification primer starts to mass-amplify the DNA fragment with the full-length DNA as a template; 10 Figure 3 shows the construction process of the plastid vector pRP, wherein: orM7, E. coli Ab co/ί) plaque of the plastid pACYC177 Starting point; ori-pAM α 1 'D. faecalis (iSVrepiococcM·? /aeca/h) DS-5 plastid ρΑΜ α 1 replication initiation point; Apr, ampicillin resistant gene; Tcr , tetracycline 15 resistant gene; P, promoter; SD, SD sequence (Shine-Dalgarno sequence); pre, the DNA coding sequence of the message (signal peptide); pro, pre-sequence (prosequence) DNA coding sequence, which is involved in the folding and secretion of proteases; mature, DNA coding sequence of mature protease; MCS, multiple selection sites (multiple Cloning site); α/eC, a downstream DNA sequence, which may contain a sequence of transcription terminators; Figure 4 shows the use of primers in Table 2 and the use of overlap extension polymerase chain reaction (overlapping-extensio) n polymerase chain reaction, 20 1321567 No. 095118228 Patent Application Specification Revision Page Revision Date: October 2015 曰 OEPCR) Agarose gel electrophoresis results of PCR products obtained, wherein Μ: 100 bp DNA molecular marker ; Path 1: PCR products obtained by OEPC using primers AFP·1/1/, AFP-SS, AFP1 and AFP2; and diameter 2: OEPCR using primers AFP-valence wffl, AFP-SS, AFP1 and AFP2 5 obtained PCR product; Figure 5 shows the construction process of a plastid vector PRP-AFP; Figure 6 shows the construction process of a plastid vector PQE30-AFP, wherein: /acO, /ac promoter; ori-pBR322, pBR322 The origin of replication; the pQE30 terminator, which contains the Lambda transcriptional termination region and the rmS T1 transcriptional termination region; Figure 7 shows the plastid vector pET12a -AsAFP construction process, wherein the message peptide is the message peptide of E. coli outer membrane protease 〇 mpT; 15 Figure 8 shows the construction process of the plastid vector pET12a-OsAFP; Figure 9 shows the colon Tricine-SDS-PAGE electrophoresis results of recombinant antifreeze protein analogs produced by the transformed strains (f. co" transformants), in which the diameter Μ: low molecular weight protein marker; diameter 1: from E. coli M15 ( Protein purified from cytoplasm 2〇 fractionation of pREP4, pQE30-AFP); diameter 2: protein purified from the medium fraction of E. coli BL21 (DE3) (pET12a-AsAFP); Protein purified from the intracellular soluble fraction of E. coli BL21 (DE3) (pET 12a-AsAFP); PATH 4: Amendment from the amendment page of the E. coli 21 1321567 Patent No. 095118228 patent application: Protein purified from the intracellular insoluble fraction of BL21(DE3)(pET12a-AsAFP) in October 1998; Path 5: intracellular from Escherichia coli BL21(DE3)(pET12a-OsAFP) a protein partially purified; and a protein purified from the intracellular insoluble portion of Escherichia coli BL21 (DE3) (pET12a-5 OsAFP); and Figure 10 shows a recombinant antifreeze protein according to the present invention. The effect of reducing ice crystal formation, where area A (panel A): water; area B (panel B): lysis buffer containing 8 Μ urea (urea); area C (panel C) : Protein purified from the cytoplasmic portion of Escherichia coli M15 (pREP4, pQE30-AFP); D region (panel D): a protein partially purified from the medium of Escherichia coli BL21 (DE3) (pET12a-AsAFP); Panel (panel E): a protein purified from the intracellular soluble fraction of E. coli BL21 (DE3) (pET12a-AsAFP); F region (panel F): from Escherichia coli BL21 (DE3) (pET12a-AsAFP) 15 insoluble protein in the insoluble fraction of the cells; G-zone (panel G): a protein purified from the intracellular soluble fraction of E. coli BL21 (DE3) (pET12a-OsAFP); and n-region (panei Η): from E. coli 81^21 (0£3) (卩 卩 丁 123-〇3 into? ? Figure 7 is a schematic diagram showing three genes for the expression vectors pSP1Atag, pSP2Atag and pSP3Atag of the anti-beam protein 20 (AFP) analogs Α, 2Α and 3Α according to the present invention. Composition, wherein: SD, SD sequence; $, message peptide encoding DNA; alpha force, anti-; East protein gene; and, (His) 6 DNA; Figure 12 schematically illustrates the use of polymerase chain reaction (PCR) Using the primers described in Table 5 of Example 7 below, and the amendments to the specification of the patent application No. 22 1321567, No. 095,118,228, date of revision: October, October 1曰pET-12a-AsAFP or p-RP- The AFPI gene in AFP is used as a template to generate a PCR product encoding three antifreeze protein analogs 2, 2A and 3A having different numbers of repeating amino acid units according to the present invention, wherein: π, the message peptide encodes DNA; <3 force 7, anti-; East protein gene; and, (His) 6 5 DNA; Figure 13 shows Escherichia coli BL21 (DE3) (pSP1Atag), Escherichia coli BL21 (DE3) (pSP2Atag) and Escherichia coli BL21 (DE3) (pSP3Atag) induced by 1 mM IPTG for 3 hours The results of Tricine-SDS 10 PAGE analysis of the nutrient fraction and the protein collected by total cell lysate; Figure 14 shows Escherichia coli BL21(DE3)(pSPlAtag), Escherichia coli BL21(DE3)(pSP2Atag) and Escherichia coli BL21 (DE3) (pSP3Atag) was induced with 1 mM IPTG for 3 hours, and the results were analyzed by Tricine-SDS PAGE of recombinant antifreeze protein analog ΙΑ, 2A and 3A purified from the medium fraction, wherein the diameter was 1: Recombinant antifreeze protein analog 1A from the medium portion of E. coli BL21 (DE3) (pSP1Atag); diametric 2: recombinant antifreeze protein analog 2A from the medium portion of E. coli BL21 (DE3) (pSP2Atag); Path 3: Recombinant antifreeze protein analog 3A from the medium portion of Escherichia coli BL21(DE3) (pSP3Atag); 20 Figure 15 shows the expression vectors pSP1Atag, pSP2Atag with antifreeze protein (AFP) analog ΙΑ, 2A and 3A Cell growth of Escherichia coli BL21 (DE3) transformed with pSP3Atag and secretion production of recombinant antifreeze protein analogs 1A, 2A and 3A; Figure 16 shows recombinant antifreeze protein analogues 1 a, 2A and 3A inhibit ice crystals 23 1321567第09 Revision No. 5118228 Patent Application Revision Date: The analysis of the ability of recrystallization in October 1998, in which the concentrations of recombinant antifreeze protein analogues 1A, 2A and 3A were both 400 pg/pL; C was the control group. (PBS buffer, 50 mM NaH2P04, 300 mM NaCl, pH 8.0); and CAFPI is a commercially available type I antifreeze protein (A/F protein Canada Inc.), which is from the cold ocean fish (cold ocean fish) The purity of the blood is between 90 and 99%; Figure 17 shows the results of a single ice crystal configuration of the recombinant antifreeze protein analogs 1A, 2A and 3A, wherein the recombinant anti-east protein analogue 1A, The concentrations of 2A and 3 A were both 400 pg/pL; C was the control group (PBS buffer, 50 mM 10 NaH2P04, 300 mM NaCl, pH 8.0); and CAFPI was a commercially available type I anti-beam protein (A/ F protein Canada Inc.), which is isolated from the blood of cold ocean fish, with a purity between 90 and 99%; Figure 18 shows the pH of recombinant antifreeze protein analogues ία, 2A and 3A Value 15 stability, in which the concentrations of recombinant antifreeze protein analogs 2, 2A and 3A are both 400 pg/p L; and C are the control group (PBS buffer, 50 mM NaH2PO4, 300 mM NaCl, pH 8.0); Figure 19 shows the thermal stability of the recombinant antifreeze protein analogs 丨a, 2A and 3A, wherein the recombinant antifreeze protein is similar The concentrations of 1A, 2A, and 3A were both 400 20 叩/叫; and C was the control group (PB S buffer, 50 mM NaH 2 P 〇 4, 300 mM NaCl, pH 8.0); and Figure 20 shows recombinant resistance. The minimum inhibitory concentration (MIC) of frozen protein analogs 2, 2A and 3A. t: Embodiment; 1 24 1321567 Patent Application No. 095118228 Revision page Revision period: October 1998 1 Detailed description of the preferred embodiment (detailed description of the invention) Type I antibody; The blood or epidermis of right-eye flounders, corpses, sculpins, snailfish, etc., and the 5-amino acid sequence of the j-type antifreeze protein known today is listed. It is shown in Table 1 as described above. It is analyzed that the known Type I antifreeze proteins have the following structural and functional properties: the configuration is an α-helical structure, and the molecular weight is between 3 and 10 kDa. It is mainly composed of a repeating unit "Thr-X2-Asx-X7" having 11 amino acid residues, wherein X is mostly Ala ' and Asx is Asp or Asn, Thr residue in the repeating unit of amino acid Base 1 plays an important role in the binding of type I antifreeze proteins to ice crystals, and the greater the number of amino acid repeat units, the better the ability of type I antifreeze proteins to lower freezing points. Retaining the α-helical configuration of type I antifreeze proteins and repeating the amino acid The important function-related Thr residue in the element should be able to construct 15 protein analogs with antifreeze properties. In addition, increase the number of amino acid repeating units in the antifreeze protein' or stabilize the antifreeze protein α. The spiral configuration should achieve the purpose of improving the ability of antifreeze proteins to inhibit the growth of ice crystals. Therefore, the applicant developed a novel method based on the structural and functional properties of type I antifreeze protein. Antifreeze protein analog. 20 According to the technical idea of the present invention, the antifreeze protein analog is designed in the primary structure to be a repeating unit "Thr-Xz-Asx-X7" having 11 amino acid residues. The basis of the invention is to retain the essential amino acid sequence with antifreeze characteristics and to correct the n-terminus of the synthetic antifreeze protein analog and the specification of the patent application No. 095118228 Page correction period: 98 years and 1 month! The amino acid residue of the 疋 疋 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 螺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺 胺The acid residue, and the number of repeating single 7L of the amino acid is increased', whereby the anti-mystery analog is more stable than the natural antifreeze protein and the anti-freezing effect is comparable or better. Thus, the present invention provides an anti-freezing effect. a frozen protein analog comprising an amino acid sequence represented by formula (1): YP-[AR]a_W-Z (1) wherein: a is an integer from 1 to 20; 10 is in each -[AR]- R independently represents a direct bond or a spacer sequence containing 3 to 15 amino acid residues; A in each -[AR]- independently represents a Forming a helical structure of -Qm-, wherein: 15 m is an integer from 3 to 20; Q is an amino acid repeating unit comprising 11 amino acid residues and represented by formula (11):
Xl-X2-X3-X4-X5~X6-X7-X8-X9~Xl〇-Xll- (II) 其中: 在各個Q内的X丨是一蘇胺酸(threonine, Thr),或者有 至少一個Q内的Χι可被替換為網胺酸(valine, Val); 在各個Q内的X4是一選自於天冬醯胺酸(asparagine, Asn)與天冬胺酸(aspartic acid, Asp)的胺基酸殘 基,或者有至少一個Q内的X4可被替換為一選自於 26 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 下列群組中的胺基酸:蘇胺酸、纈胺酸以及丙胺酸; 有至少一個Q内的又6與又1()是一組可於胺基酸序列 内形成鹽橋以安定螺旋結構的胺基酸殘基,其 中Χ6與Χίο當中有一者是一選自於離胺酸(lysine, 5 Lys)與精胺酸(arginine, Arg)的胺基酸殘基,而另一 者是楚胺酸(glutamic acid,Glu); 在各個Q内的Χι丨是一白胺酸(leucine,Leu) ’或者有 至少一個Q内的Xn可被替換為一選自於丙胺酸與 天冬胺酸的胺基酸;以及 10 在各個Q内的其餘胺基酸殘基是丙胺酸,該等丙胺 酸提供該抗床蛋白類似物與冰晶(ice crystals)結合 之時所需要的凡得瓦力(vanderWaalsforce),或者 有至少一個Q内的X3可被替換為一選自於下列所構 成的群組中的胺基酸:絲胺酸(serine,Ser)、類胺 15 酸、天冬胺酸以及精胺酸; Y為不存在’或者表示一個蛋白質標幡(protein tag); P表示一或數個胺基酸殘基,其中直接鄰接於-[A-R]a-的胺 基酸殘基是一選自於天冬胺酸與麩胺酸的酸性胺基酸 (acidic amino acid); 20 w表示一或數個胺基酸殘基,其中至少有一個胺基酸殘基 是一選自於精胺酸、組胺酸(histidine,His)與離胺酸的驗性 胺基酸(basic amino acid);以及 Z為不存在’或者表示一個蛋白質標幡; 仁有條件疋該抗;東蛋白類似物非為一具有如序列辨識編 27 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 號:1所示的胺基酸序列的蛋白質。 依據本發明,較佳地,a是一個1至12的整數,更佳為1 至8,又更佳為1至4。 在本發明的一個較佳具體例中,該抗凍蛋白類似物包 5 含有一以式(III)來表示的胺基酸序列: Y-P-A-[R-A]n-W-Z (in) 其中: η是0或一個由1至15的整數; R/於每次出現時獨立地是一個包含有3至15個胺基酸殘基 10 的間隔序列; Α於每次出現時獨立地是一個會形成<2 -螺旋結構的-Qm-, 其中: m是一個3至20的整數; Q是一個包含有11個胺基酸殘基並以式(II)來表示的胺 15 基酸重複單元: -Χΐ-Χ2_Χ3_Χ4·Χ5_Χ6_Χ7-Χ8_Χ9_Χΐ0_Χΐ1_ (II) 其中: 在各個Q内的X,是一蘇胺酸,或者有至少一個Q内 的X,可被替換為纈胺酸; 20 在各個Q内的X4是一選自於天冬醯胺酸與天冬胺酸 的胺基酸殘基,或者有至少一個Q内的X4可被替換 為一選自於下列群組中的胺基酸:蘇胺酸、纈胺酸 以及丙胺酸; 有至少一個Q内的X6與X10是一組可於胺基酸序列 28 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年1〇月】日 内形成鹽橋以安定螺旋結構的胺基酸殘基,其 中Χ6與Χ1〇當中有一者是一選自於離胺酸與精胺酸 的胺基酸殘基,而另一者是麩胺酸; 在各個Q内的Χιι是一白胺酸,或者有至少一個Q内 5 的Χιι可被替換為一選自於丙胺酸與天冬胺酸的胺 基酸;以及 在各個Q内的其餘胺基酸殘基是丙胺酸,該等丙胺 酸提供該抗床蛋白類似物與冰晶結合之時所需要 的凡得瓦力,或者有至少一個Q内的X3可被替換為 10 一選自於下列所構成的蛘組中的胺基酸:絲胺酸、 纈胺酸、天冬胺酸以及精胺酸; Y為不存在,或者表示一個蛋白質標幡; P表示一或數個胺基酸殘基,其中直接鄰接於 胺基酸殘基是一選自於天冬胺酸與麩胺酸的酸性胺基酸; 15 w表不一或數個胺基酸殘基,其中至少有一個胺基酸殘基 是一選自於精胺酸、組胺酸與離胺酸的鹼性胺基酸;以及 Z為不存在,或者表示一個蛋白質標幟; 但有條件是該抗凍蛋白類似物非為一具有如序列辨識編 號:1所示的胺基酸序列的蛋白質。 20 依據本發明,較佳地,η是一個〇至11的整數,更佳為〇 至7 ’又更佳為〇至3。 依據本發明,m的數值愈大’該抗凍蛋白類似物的抗凍 活性愈佳。較佳地,m是一個4至15的聱數。更佳地,m是 個4至12的整數。而為使該抗;東蛋白類似物的〇;-螺旋結 29 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年1〇月i曰 構能維持良好,當m^4時,建議尺或尺,應存在而且較佳地包 含有5-7個胺基酸,其中可包含脯胺酸(proline) »在本發明 的一個較佳具體例中,πι=4。 依據本發明,該抗凍蛋白類似物的“_Qm_,,具有—丙胺 5酸含量是落在5〇%-85%的範圍内,較佳為55%_80%。更佳 地,該抗凍蛋白類似物的“_Qnr”具有一丙胺酸含量是大於 60% ’更佳為大於65%。 依據本發明,在各個-Qm-内有至少一個Q内的X6是離胺 酸(Lys),而χ10是麩胺酸(Glu)。 10 依據本發明,在-Qm-内必須被維持為丙胺酸的胺基酸 殘基,以m=4為例,可為_Qm•當中的第6、9、1〇、14、17、 21 ' 25 ' 28、29、32、36、39、40、43與44個胺基酸殘基 位置,因為它們大致上是位在抗凍蛋白與冰晶結合的表面 上,而位在第17與21位置以及第28與32位置處的胺基酸殘 15基可被替換為可形成鹽橋的胺基酸組,俾以增強α _螺旋結 構安定性。 依據本發明,在各個_(^_内有至少一個鹽橋存在,更 佳為兩個或以上。當有兩個以上的鹽橋存在於各個也内 時,它們可相鄰地或交替地存在於胺基酸重複單元q中。 *° 依據本發明,可供作為該抗康蛋白類似物的Y或Z位置 處的蛋白質標幟較佳地是一有利於蛋白質的純化且不會影 響抗;東性的蛋白質標幟,而合適的實例包括,但不限於: H1S-tag、GST-tag、Strep.tag、Arg_tag、FLAG-tag、c-myc tag、 S-tag、HAT-tag、Camodulin_tag、纖維素結合領域 tag 30 1321567 修正曰期:98年10月1曰 第095118228號專利申請案說明書修正頁 (cellulose binding domain tag)、SBP-tag、幾 丁質結合領域tag (chitin-binding domain)、麥芽糖結合領域 tag (maltose-binding tag)等等。 在本發明的一個較佳具體例中,該蛋白質標幟是一個 5 His6-tag,它容許該抗凍蛋白類似物在被生成之後可以藉由 使用錄-螯合型二甘胺酸(nickel chelating nitrilotriacetic acid,Ni-NTA)树月曰(resin)的親和性管柱層析(afnnity c〇iUIIm chromatography)而被純化。在一更佳具體例中,一個依據 本發明的抗凍蛋白類似物在其Ζ位置處具有一個His6-tag。 10 依據本發明,在該抗凍蛋白類似物所具式(I)或式(III) 的P位置處較佳地存在有1至15個胺基酸殘基,更佳為3_10 個胺基酸殘基,又更佳為5-7個胺基酸殘基。 依據本發明,在該抗凍蛋白類似物所具式⑴或式(m) 的W位置處較佳地存在有1至15個胺基酸殘基,更佳為3_1〇 15 個胺基酸殘基’又更佳為5-7個胺基酸殘基。 依據本發明,在該抗凍蛋白類似物所具式⑴的r位置或 式(III)的R/位置處較佳地存在有3-1〇個胺基酸殘基,更佳為 5-7個胺基酸殘基。 依據本發明,在該抗凍蛋白類似物所具式(I)的ρ位置處 20可具有一天冬胺酸(Asp)或麩胺酸殘基,並在w位置處可具 有一精胺酸殘基,俾以增強該抗凍蛋白類似物的螺旋結 構的安定性(參考 G. Merutka, et al. (1991),Biochem, 30:4245-4248) ° 依據本發明,申請人設計出具有如圖1中所示的胺基酸 31 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 序列的抗凍蛋白類似物1 (其中X1==Gly,X2=Ser)(序列辨 識編號:20)與抗凍蛋白類似物r (其中Xl = Asp,X2=Pro)(序 列辨識編號:21),它們具有4個胺基酸重複單元,於第20及 31個胺基酸位置是離胺酸,於第24及第35個胺基酸位置處 5 是麩胺酸’而使得在第20與24個胺基酸之間以及在第31與 35個胺基酸之間會形成鹽橋,因而具有安定“·螺旋結構的 功用。又’有一個天冬胺酸(Asp)殘基被設置在該抗凍蛋白 類似物1與I的第一個胺基酸重複單元的N端(N-termininal) 上游處以及有一個精胺酸(Arg)殘基被設置在該抗凍蛋白類 10 似物1與1的最後一個胺基酸重複單元的C端下游處,這有 利於安定α-螺旋結構。此外,該抗凍蛋白類似物1與1,被設 計成具有一個六員組胺酸標幟(His6 tag)位在C端 (C-terminial)處,而容許該抗凍蛋白類似物1與r可利用使用 Ni-NTA樹脂的親和性管柱層析來進行純化。 15 另擇地’可以在該抗凍蛋白類似物1與Γ的第一個胺基 酸重複單元的N端(N-termininal)上游處設置一個甦胺酸 (Glu)殘基,這也會有利於安定〇:-螺旋結構。 如本文中所用的,“多肽”、“胜肽”和“蛋白質”等術語可 被相互交換使用,且意指一種由胺基酸殘基所構成的聚合 2〇 物,其中一或多個胺基酸殘基是天然存在的胺基酸 (naturally occurring amino acids)或人造的 匕學仿效物 (artificial chemical mimics)。 在本文中,胺基酸可以其全名、三個字母的縮寫以及 單一字母符號來表示,這是本技藝中已詳知的。此外,依 32 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 照胜狀標示的慣例,蛋白質的左端是N端(胺基端),而右端 是C端(羧基端)。 在本發明的抗凍蛋白類似物中,C端通常為羧酸 (-COOH)或羧酸根(-COO -)基團,但C端亦可為醯胺 5 (_CONH2)或缓酉变酯(-COOR)基團,其中R可為:Ck烧基, 諸如甲基、乙基、正丙基、異丙基、正丁基以及類似物; CS-8環烷基,諸如環戊基及環己基以及類似物;c6_12芳基, 諸如苯基(phenyl)、α-萘基(a-naphthyl)以及類似物;以及 C7_i4芳烧基(aralkyl),諸如苯曱基(benzyl)、苯乙基 10 (Phenethyl)、α -萘甲基(a -naphthylmethyl)以及類似物。當 本發明的抗凍蛋白類似物具有一羧酸或羧酸根基團位在C 端以外的位置處時,含有一缓基被酿胺化或g旨化的蛋白質 亦被包含於本發明中,而此處的酯基團可為那些於前述就C 端所描述的酯基團。 15 選擇性地’本發明的抗凍蛋白類似物在其N端處的胺基 酸殘基的胺基基團可被一保護基團所保護,該保護基團可 為一C丨·6醯基(acyl group),諸如甲醯基(formyl group)、乙醯 基(acetyl)等的Cu院酿基(alkanoyl group)。 依據本發明的抗凍蛋白類似物可以被形成為呈生理上 20 可接受的鹽類的形式,而該生理上可接受的鹽類包括那些 帶有無機酸(諸如氯化氫、溴化氫、硫酸、磷酸)的鹽類;那 些帶有有機酸(諸如醋酸' 馬來酸、酒石酸、破珀酸、檸檬 酸、蘋果酸、草酸、苯甲酸、甲磺酸、苯磺酸等)的鹽類; 以及那些帶有胺基酸(諸如精胺酸、天冬胺酸、麵胺酸等) 33 1321567 第095118228號專利申请案說明書修正頁 修正日期:98年10月1曰 的鹽類 依據本發明的抗凍蛋白類似物可以採用傳統的化學合 成法來製造’例如’於均質溶液中或在固相(s〇lid phase)上 予以貫行。在此方面’可以參照’例如’ C/jaAraZjctri/y 5 Hent (1991),Eur.丄 Biochem., 202:1057-1063。 而為了能夠更經濟地提供大量且價廉的抗凍蛋白,利 用遺傳工程技術來生產依據本發明的抗凍蛋白類似物可能 會是一個好選擇。因此,根據遺傳工程技術的已知知識與 技術,當一依據本發明的抗凍蛋白類似物所具有的胺基酸 10序列被°又疋出時’即可以依據遺傳密碼子表(genetic codon table),特別是一選定的宿主細胞的偏好密碼子,來生成該 抗凌蛋白類似物的一個對應核酸編碼序列,然後將該核酸 編碼序列植入至一合適的宿主細胞内,並讓該核酸編碼序 列於該宿主細胞内被表現,而後再進行被表現的抗凍蛋白 15 類似物的純化。 如本文中所用的,“核酸”或“核酸序列”等術語意指呈 單股或雙股形式的去氧核糖核苷酸序列或核糖核苷酸序 歹J且“中包έ有已知的天然存在的核苷酸(naturally occuiring nucleotides)或人造化學仿效物(aritificial 20 chemical mimics)。如本文中所用的,“核酸,,此術語可與“基 因’’、“cDNA”、“mRNA”、“寡核4酸”和“聚核苔酸”交換使 用。 除非另有指明’一核酸序列除了於本文中所顯示的特 疋序列外’亦涵盖其互補序列(c〇mplementary seqUences)以 34 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 及守怪性類似物(conservative analogs),例如具有簡併性密 碼子取代(degenerative codon substitutions)的同源性序列 (homologous sequences)。特別地,簡併性密碼子取代可以 經由,例如,在一核酸序列中的一或多個被選定的密碼子 5的第3位置處替換以其他的核苷酸殘基而被產生。 用來操作核酸的技術,像是例如用來於序列中產生突 變(mutation)、次選殖(subcloning)、標示(labelling)、探針檢 測(probing)、定序(sequencing)、雜交(hybridization)等等, 在科學和專利文獻中皆有詳細說明。參見,例如,Sambrook 10 J, Russell DW (2001) Molecular Cloning: a Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York; Current Protocols in Molecular Biology, Ausubel ed., John Wiley & Sons, Inc., New York (1997); Laboratory Techniques in Biochemistry and Molecular Biology: 15 Hybridization With Nucleic Acid Probes, Part I, Theory and Nucleic Acid Preparation, Tijssen ed” Elsevier, N.Y. (1993) o 要獲得一依據本發明的抗凍蛋白類似物的核酸編碼序 列,可以採用傳統的化學合成法來製造,例如,先合成出 部分的序列(partial sequences)而後再予以連接起來。之後, 20 可以利用聚合酶連鎖反應法(polymerase chain reaction, PCR)來進行該核酸編碼序列的擴增。Xl-X2-X3-X4-X5~X6-X7-X8-X9~Xl〇-Xll- (II) where: X丨 in each Q is a threonine (Threonine, Thr), or at least one The Χι in Q can be replaced by valine (Val); X4 in each Q is selected from asparagine (Asn) and aspartic acid (Asp). The amino acid residue, or the X4 in at least one Q, may be replaced by an amino acid selected from the following group: 26 1321567 Patent No. 095,118,228, Patent Application Revision Date: October 1, 1998 : sulphate, valine and alanine; having at least one Q and 6 and 1 () are a group of amino acid residues which form a salt bridge in the amino acid sequence to stabilize the helical structure, wherein One of Χ6 and Χίο is an amino acid residue selected from the group consisting of lysine (5 Lys) and arginine (Arg), and the other is glutamic acid (Glu). Χι丨 in each Q is leucine (Leu)' or Xn in at least one Q can be replaced with an amino acid selected from alanine and aspartic acid; Within each Q The amino acid residue is alanine, which provides the vanderWaalsforce required for the binding of the anti-bedin analog to ice crystals, or the X3 of at least one Q can be Replaced with an amino acid selected from the group consisting of serine (Ser), imine 15 acid, aspartic acid, and arginine; Y is absent or represents a protein A protein tag; P represents one or several amino acid residues, wherein the amino acid residue directly adjacent to -[AR]a- is an acid selected from aspartic acid and glutamic acid. Acidic acid; 20 w represents one or several amino acid residues, wherein at least one of the amino acid residues is selected from the group consisting of arginine, histidine (His) and A basic acid of amino acid; and Z is absent or represents a protein standard; the condition of the protein is 疋; the east protein analogue is not one having the sequence identification 27 1321567 095118228 Amendment date of the patent application specification revision date: October 1st, 1998: Amino acid sequence shown in 1: Protein. Preferably, a is an integer of from 1 to 12, more preferably from 1 to 8, still more preferably from 1 to 4, in accordance with the present invention. In a preferred embodiment of the present invention, the antifreeze protein analog package 5 comprises an amino acid sequence represented by the formula (III): YPA-[RA]nWZ (in) wherein: η is 0 or a An integer from 1 to 15; R/ is independently a spacer sequence containing from 3 to 15 amino acid residues 10 at each occurrence; 独立 is independently formed at each occurrence to form <2 - -Qm- of the helical structure, wherein: m is an integer from 3 to 20; Q is an amine 15 acid repeating unit comprising 11 amino acid residues and represented by formula (II): -Χΐ-Χ2_Χ3_Χ4 ·Χ5_Χ6_Χ7-Χ8_Χ9_Χΐ0_Χΐ1_ (II) where: X in each Q is a threonine, or there is at least one X in Q, which can be replaced by proline; 20 X4 in each Q is one selected from The amino acid residue of aspartic acid and aspartic acid, or X4 in at least one Q, may be replaced by an amino acid selected from the group consisting of sulphonic acid and proline. And alanine; having at least one of X6 and X10 in a Q is a group of amino acid sequence 28 1321567 Patent Application No. 095118228 Authentic date: 98 years 1 month] The formation of a salt bridge to stabilize the helical amino acid residue, wherein one of Χ6 and Χ1〇 is an amino acid residue selected from the group consisting of lysine and arginine. And the other is glutamic acid; Χιι in each Q is a leucine, or at least one quinone in Q can be replaced by an amino acid selected from alanine and aspartic acid And the remaining amino acid residues in each Q are alanine, which provide the van der Waals required for the binding of the anti-bedin analog to ice crystals, or at least one X of Q Replaced with 10 amino acids selected from the group consisting of: serine, valine, aspartic acid, and arginine; Y is absent or represents a protein standard; Represents one or several amino acid residues, wherein the amino acid residue directly adjacent to the amino acid residue is an acidic amino acid selected from the group consisting of aspartic acid and glutamic acid; 15 w represents one or several amino acids a residue wherein at least one amino acid residue is a basic amino acid selected from the group consisting of arginine, histidine, and lysine; And Z is absent, or represents a protein flag; however, that the conditions for the non-antifreeze protein analog having a sequence as Identification Number: amino acid sequence of the protein shown in Figure 1. According to the invention, preferably, η is an integer from 〇 to 11, more preferably from 〇 to 7 ′ and even more preferably from 〇 to 3. According to the present invention, the larger the value of m, the better the antifreeze activity of the antifreeze protein analog. Preferably, m is a number of turns of 4 to 15. More preferably, m is an integer from 4 to 12. In order to make the anti-; East-protein analog 〇; - Helical knot 29 1321567 No. 095118228 patent application revised page revised period: 98 years 1 month month, I曰 structure can maintain good, when m ^ 4, it is recommended The ruler or ruler should be present and preferably comprise from 5 to 7 amino acids, which may comprise proline. In a preferred embodiment of the invention, πι=4. According to the present invention, the "_Qm_," having an -propylamine 5 acid content of the antifreeze protein analog falls within the range of 5% to 85%, preferably 55% to 80%. More preferably, the antifreeze protein The "_Qnr" of the analog has a monoalanine content of greater than 60% 'more preferably greater than 65%. According to the invention, X6 in at least one Q in each -Qm- is an lysine (Lys), while χ10 It is glutamic acid (Glu). 10 According to the present invention, the amino acid residue which must be maintained as alanine in -Qm-, for example, m=4, may be the sixth, ninth of _Qm• 1〇, 14, 17, 21 ' 25 ' 28, 29, 32, 36, 39, 40, 43 and 44 amino acid residue positions, as they are roughly on the surface where antifreeze proteins bind to ice crystals The amino acid residue 15 group at positions 17 and 21 and positions 28 and 32 may be replaced with an amino acid group capable of forming a salt bridge to enhance the stability of the α_helical structure. There are at least one salt bridge in each _(^_, preferably two or more. When more than two salt bridges are present in each, they may be present adjacent or alternately in the amine The acid repeats in unit q. *° According to the present invention, the protein label at the Y or Z position available as the anti-Kang protein analog is preferably a protein-friendly purification and does not affect the resistance; Protein markers, and suitable examples include, but are not limited to: H1S-tag, GST-tag, Strep.tag, Arg_tag, FLAG-tag, c-myc tag, S-tag, HAT-tag, Camodulin_tag, cellulose binding </ RTI> </ RTI> </ RTI> </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; Tag (maltose-binding tag), etc. In a preferred embodiment of the invention, the protein marker is a 5 His6-tag which allows the antifreeze protein analog to be used after being generated - Purified by afnnity c〇iUIIm chromatography of nickel chelating nitrilotriacetic acid (Ni-NTA). In a better example, one Antifreeze egg according to the invention The white analogue has a His6-tag at its purine position. 10 According to the present invention, preferably 1 to 15 of the anti-frozen protein analog has a P position of formula (I) or formula (III). The amino acid residue is more preferably 3 to 10 amino acid residues, still more preferably 5 to 7 amino acid residues. According to the present invention, preferably 1 to 15 amino acid residues, more preferably 3_1〇15 amino acid residues, are present at the W position of the antifreeze protein analog of formula (1) or formula (m). More preferably, the radical '5-7 amino acid residues. According to the present invention, the antifreeze protein analog preferably has 3-1 amino acid residues, more preferably 5-7, at the r position of the formula (1) or the R/position of the formula (III). Amino acid residues. According to the present invention, the antifreeze protein analog may have an aspartic acid (Asp) or glutamic acid residue at the p position of the formula (I), and may have a arginine residue at the w position. Base, hydrazine to enhance the stability of the helical structure of the antifreeze protein analog (cf. G. Merutka, et al. (1991), Biochem, 30: 4245-4248). According to the present invention, the applicant has designed Amino acid 31 1321567 shown in 1 Revision No. 095118228 Patent revision page Correction period: October 1 98 sequence of antifreeze protein analog 1 (where X1 == Gly, X2 = Ser) (sequence Identification number: 20) with antifreeze protein analog r (where Xl = Asp, X2 = Pro) (SEQ ID NO: 21), which have 4 amino acid repeating units at positions 20 and 31 amino acid Is an amino acid, at the 24th and 35th amino acid positions, 5 is glutamic acid' such that it forms between the 20th and 24th amino acids and between the 31st and 35th amino acids. Salt bridge, thus having the function of a stable "·helical structure. Again" has an aspartic acid (Asp) residue set in the first amine of the antifreeze protein analogues 1 and I The N-termininal upstream of the acid repeat unit and a arginine (Arg) residue are placed downstream of the C-terminus of the last amino acid repeat unit of the antifreeze protein 10 and 1 Here, it is advantageous to stabilize the α-helical structure. Furthermore, the antifreeze protein analogues 1 and 1 are designed to have a six-member histidine tag (C-terminial) at the C-terminial position. The antifreeze protein analogs 1 and r are allowed to be purified by affinity column chromatography using a Ni-NTA resin. 15 Alternatively, the antifreeze protein analog 1 and the first amine of the hydrazine can be used. A threonine (Glu) residue is placed upstream of the N-termininal of the repeating unit of the acid, which also contributes to the stable:-helical structure. As used herein, "polypeptide", "peptide" And the terms "protein" and the like may be used interchangeably and mean a polymeric 2 quinone consisting of amino acid residues, wherein one or more amino acid residues are naturally occurring amino acids (naturally Occurrence amino acids) or artificial chemical mimics. In this paper, The amino acid can be represented by its full name, a three-letter abbreviation, and a single letter symbol, as is well known in the art. In addition, the revision page of the patent application specification of No. 32 1321 567 In October 1st, the convention of the singularity is that the left end of the protein is the N-terminus (amine-based end) and the right end is the C-terminus (carboxyl end). In the antifreeze protein analog of the present invention, the C-terminus is usually a carboxylic acid (-COOH) or carboxylate (-COO-) group, but the C-terminus may also be a guanamine 5 (_CONH2) or a slow mutated ester ( a -COOR) group, wherein R can be: a Ck alkyl group such as methyl, ethyl, n-propyl, isopropyl, n-butyl and the like; a CS-8 cycloalkyl group such as a cyclopentyl group and a ring Hexyl and analogs; c6_12 aryl, such as phenyl, a-naphthyl and the like; and C7_i4 aralkyl, such as benzyl, phenethyl 10 (Phenethyl), α-naphthylmethyl and the like. When the antifreeze protein analog of the present invention has a monocarboxylic acid or a carboxylate group at a position other than the C terminal, a protein containing a slow group or a glycosylation is also included in the present invention. The ester groups herein may be those described above for the C terminal. 15 Optionally, the amine group of the amino acid residue at the N-terminus of the antifreeze protein analog of the present invention may be protected by a protecting group which may be a C丨·6醯Acyl group, a Cukanyl group such as foryl group, acetyl group or the like. The antifreeze protein analogs according to the present invention may be formed in the form of physiologically acceptable salts, including those having a mineral acid such as hydrogen chloride, hydrogen bromide, sulfuric acid, Salts of phosphoric acid; those salts with organic acids such as acetic acid 'maleic acid, tartaric acid, saprotic acid, citric acid, malic acid, oxalic acid, benzoic acid, methanesulfonic acid, benzenesulfonic acid, etc.; Those with an amino acid (such as arginine, aspartic acid, amylin, etc.) 33 1321567 Patent Application Publication No. 095118228 Revision Date: October 1st, 1998 Salts According to the invention Frozen protein analogs can be made by conventional chemical synthesis, for example, in a homogeneous solution or on a solid phase. In this regard, reference is made to, for example, 'C/jaAraZjctri/y 5 Hent (1991), Eur. 丄 Biochem., 202: 1057-1063. In order to be able to provide a large number of inexpensive antifreeze proteins more economically, it may be a good choice to use genetic engineering techniques to produce antifreeze protein analogs according to the present invention. Therefore, according to the known knowledge and technology of genetic engineering technology, when the amino acid 10 sequence of the antifreeze protein analog according to the present invention is extracted, it can be based on the genetic codon table (genetic codon table). , in particular, a preferred host cell preferred codon to generate a corresponding nucleic acid coding sequence for the anti-linguistic analog, and then the nucleic acid coding sequence is inserted into a suitable host cell and the nucleic acid is encoded The sequence is expressed in the host cell, followed by purification of the expressed antifreeze protein 15 analog. As used herein, the terms "nucleic acid" or "nucleic acid sequence" and the like mean a deoxyribonucleotide sequence or ribonucleotide sequence in the form of a single strand or a double strand and is known to have Naturally occuiring nucleotides or aritificial 20 chemical mimics. As used herein, "nucleic acid," the term can be used with "gene", "cDNA", "mRNA", "Oligonucleotide 4 acid" and "polynucleic acid" are used interchangeably. Unless otherwise indicated, 'a nucleic acid sequence other than the particular sequence shown herein' also encompasses its complementary sequence (c〇mplementary seqUences) to 34 1321567 Revision No. 095,118,228, the revised page of the specification of the patent application: October 1st, 1998 and conservative analogs, such as homologous sequences with degenerative codon substitutions (homologous) In particular, degenerate codon substitutions can be made, for example, by replacing the third position of one or more selected codons 5 in a nucleic acid sequence with other Nucleotide residues are produced. Techniques for manipulating nucleic acids, such as, for example, for generating mutations, subcloning, labelling, probing, and Sequencing, hybridization, etc., are described in detail in the scientific and patent literature. See, for example, Sambrook 10 J, Russell DW (2001) Molecular Cloning: a Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York; Current Protocols in Molecular Biology, Ausubel ed., John Wiley & Sons, Inc., New York (1997); Laboratory Techniques in Biochemistry and Molecular Biology: 15 Hybridization With Nucleic Acid Probes, Part I, Theory and Nucleic Acid Preparation, Tijssen ed" Elsevier, NY (1993) o To obtain a nucleic acid coding sequence for an antifreeze protein analog according to the present invention, it can be produced by a conventional chemical synthesis method, for example, by synthesizing a partial sequence ( Partial sequences) and then connected. Thereafter, 20 can be amplified by a polymerase chain reaction (PCR).
在本發明的一個較佳具體例中,申請人利用重疊延伸 聚合酶連鎖反應法(overlapping-extension polymerase chain reaction,OEPCR)來合成編碼上述抗凍蛋白類似物的DNA 35 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 序列。OEPCR疋種以聚合無連鎖反應方式來製備嵌合型 DNA序列(chimeric DNA sequence)的方法,其中利用pCR引 子(primer)的專一性(speciflcity)以及黏合溫度(anneaiing temperature)的控制,可以巧妙地將本來分開的兩個或兩個 5以上的DNA片段(fragment)黏合成一個嵌合型DNA序列。此 外,利用PCR引子末端的專一性以及黏合溫度的控制,亦 可導入所欲加入的DNA片段,例如限制酶切割位址 (restriction enzyme cutting site)、核糖體結合位址(ribosome binding site,RBS)、啟動子序列等。 10 此外’ OEPCR的進行是以慣用的丨叫DNA聚合酶配合 P/w DNA聚合酶來進行DNA的擴增(amplification)。 DNA聚合悔具有複查(proof-reading)功能,而能降低DNA合 成時發生錯誤的機率。此方法已有被人利用於合成許多查 限於合成長度的DNA編碼序列。在本發明的一個較佳具體 15例中’申請人使用枯草桿菌的偏好密碼子來生成一編碼上 述抗束蛋白類似物1與Γ的DNA片段,它們是使用下面表2 中所示的引子來進行如圖2中所示的0EPCR而被合成出。 參見圖2,可使用4個在它們的序列之間存在有互補性 的引子(primers)來生成一編碼圖1中所示的抗凍蛋白類似 20物1與I的PCR產物。標號2與標號3分別表示模版引子 (template primer),該二模版引子於它們的3,端處是彼此互 補的。例如,標號2可為引子AFP1 (序列辨識編號:25),而 標號3可為引子AFP2 (序列辨識編號:26)。標號1表示用於擴 增標號2的模版引子之擴增引子(amplifying primer)或前向 36 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 引子(forward primer)。例如,標號1可為用於擴增引子AFP1 的引子AFP-BamHI (序列辨識編號:22)或引子AFP-SphI (序 列辨識編號:23)。標號4表示用於擴增標號3的模版引子之擴 增引子或前向引子。例如,標號4可為用於擴增引子AFP2 5的引子AFP-SS (序列辨識編號:24)。該等擴增引子可被設計 成具有限制酶切割位址(restriction enzyme cutting sites)。當 PCR反應開始時,該二模版引子(標號2與3)會先黏合並延伸 (以3’至5’之DNA為模版,並從5’到3,的方向開始延伸),因 而生成全長的DNA。之後,擴增引子(標號1與4)以全長的 10 DNA作為模版而開始大量擴增DNA片段。 表2.用於合成AFPI基因的引子 引子名稱 核苷酸序列(5^3·) AFP-BamHI BamHl 5’-caatcag£ai££gatacagcgtcagatgcggcagcg-3’(序列辨識編號:22) AFP-SphI Sphl 5’-aatttag£ai^£aagatcctgatacagcgtcagatgcggca-3’(序列辨識編號:23) AFP-SS Sail Spel 5'-atttag这£g^£ta£itattagtggtggtggtggtggtgtcttgcg-3·(序列辨識編 號:24) AFPI 5'-gatcctgatacagcgtcagatgcggcagcggctgcggctcttactgcagctaacgcaaaag ccgcagctgaactgacggctgccaatgcgaaggcg-3·(序列辨識編號:25) AFP2 5'-ttagtggtggtggtggtggtgtcttgcggtggcagcggctgcagcagcagcgttagctgctg tgagctcggccgccgccttcgcattggcagccgt-3·(序列辨識編號:26) 註:位於引子内的限制酶切割位址被劃底線或劃框標示出,其中SWI與 的切割位址有重査。 於是,本發明合成出各別地實質上對應於編碼上述抗 15 凍蛋白類似物1與厂的DNA序列之PCR擴增產物,它們分別 具有如序列辨識編號:27與序列辨識編號:28所示的核答酸 序列。 依據本發明的核酸編碼序列可被攜帶於一表現ϋ (expression cassette)内。“表現匣’’此術語是指一種被合成地 37 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 或重組地生成的核酸建構物(synthetically or recombinantly produced nucleic acid construct),其帶有一系列的核酸要素 (nucleic acid elements)來容許一被攜帶於該表現匣内的特 定核酸在一標的細胞(target cell)内的轉錄(transcription)與 5 轉譯(translation)。 較隹地,依據本發明的表現匣包含有一啟動子序列被 可操作地連接於該核酸編碼序列的上游處。 “可操作地連接”此術語是指一第一序列被放置於足夠 近於一第二序列’而使得該第一序列可以影響該第二序列 10 或該第二序列所控制的區域。例如,一啟動子序列可操作 地連接一基因序列’且通常是在該基因序列的5,位置,而 使得該基因序列在該啟動子序列的控制下表現。此外,一 調節序列可以可操作地連接一個啟動子序列,俾此強化該 啟動子序列促進轉錄的能力。在這情況下,該調節序列通 15 常是位在該啟動子序列的5,位置。 “啟動子序列”此術語是指一DNA序列,其通常是位在 一DNA聚合物内所存在的一個基因之前方,並且提供一用 於起始該基因的轉錄以生成mRNA的位址(site f〇r initiati〇n of the transcription of said gene into mRNA) 〇 -適用於本發明的啟動子序列僅需為適於在一被選定的 宿主細胞内啟動依據本發明的核酸編碼序列的表現即可, 它可以是衍生自下列的任一者:病毒、噬菌體、細菌細胞、 酵母菌細胞、真菌細胞、藻類細胞、植物細胞、昆蟲細胞、 動物細胞以及人類細胞,且可以為一組成性啟動子 38 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 I * (constitutive promoter)或是一可誘導的啟動子(inducible promoter)。該啟動子亦可為改造自以上任何天然啟動子序 列的人工合成啟動子。 舉例而言,當宿主為埃希氏菌屬細菌時’ 5 可用的啟動子包含,但不限於:T5啟動子、T7啟動子、iac 啟動子、T7A1啟動子、/ac啟動子,irp啟動子、ire啟動子、 recA啟動子、lpp啟動子、ara凡4Z)啟動子以及又啟動子 等;當宿主為芽胞桿菌屬⑽)細菌時,可被使用的啟 動子包含,但不限於:SPOl啟動子、SP02啟動子、penP 10 啟動子等;以及當宿主為酵母菌時,可用的啟動子包含, 但不限於:PH05啟動子、PGK啟動子、GAP啟動子及ADH 啟動子等。 當宿主為昆蟲細胞時,可用的啟動子包含,但不限於: 多角體蛋白啟動子(polyhedrin promoter)及P10啟動子等。當 15 宿主為動物細胞時,可用的啟動子包含,但不限於:SRa 啟動子、SV40初期啟動子、RSV-啟動子、HIV · LTR啟動 子、HSV-TK啟動子、CMV啟動子以及CMV-HSV胸腺核苷 激酶啟動子等。 當宿主為植物細胞時,可用的啟動子包含,例如,35S 2〇 CaMV啟動子、肌動蛋白(actin)啟動子、泛素(ubiquitin)啟動 子等。 依據本發明,該啟動子序列較佳地是選自於下列所構 成的群組:T5、T7、Pjpac、P/flC、Pw、Pw、Pveg,P…、Pw、 Pw、Pflra、Pw與Pw,以及由它們衍生而得的啟動子。 39 1321567 . 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 依據本發明,一攜帶有一依據本發明的核酸編碼序列 的表現匣可被包含在一載體内而形成一重組型表現載體。 適用於本發明的載體包含一般遺傳工程技術中所使用的載 體,例如:嗟菌體(bacteriophages),例如又喧菌體;質體 5 (plasmids) ’例如來自大腸菌的質體(如pBR322、pBR325、 pUC12、pUC13、pQE-30、pET12、pET30),來自枯草桿菌 的質體(如pUBllO、pTP5、pC194),大腸桿菌(五 co/z·)與枯草桿菌似祕沿)的穿梭載體(shuttle vector) pHY300PLK ’來自酵母菌的質體(如pSH19、pSH15);黏接. 10 質體(cosmids);病毒(viruses),例如牛殖病毒(vaccinia viruses)、反轉錄病毒(retroviruses),或諸如桿狀病毒 (Baculovirus)的動物病毒等等。 適用於本發明的載體可以含有其他表現控制要素,例 如一轉錄起始位址(transcription starting site)、一轉錄終止 15 位址(transcription termination site)、一核糖體結合位址 (ribosome binding site)、一 RNA 剪接位址(RNA splicing site)、一個聚腺苷酸化位址(polyadenylation site)以及一個 轉譯終止位址(translation termination site)。適用於本發明的 載體還可包含另外的調控要素,例如轉錄/轉譯的加強子序 20 列(enhancer sequences)、SD序列(Shine-Dalgarn sequence)以 及至少一個供在適當的條件下蒒選該載體的標記基因 (marker gene)或報導基因(reporter gene)。可用於本發明的 標記基因包括,例如,用於真核細胞培養物的二氫葉酸還 原酶基因以及G418或新黴素(neomycin)抗性基因,以及用 40 1321567 , 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 於大腸桿菌與其他細菌培養物的胺苄青黴素(ampicilin)、鏈 黴素(streptomycine)、四環素(tetracycline)或康那黴素 (kanamycine)抗性基因。 此外,適用於本發明的載體可再包含一編碼分泌訊息 5 (secretion signal)的核酸序列位於依據本發明的核酸編碼序 列的5’端,而使得有一分泌訊息序列位在被表現出的重組 型蛋白的N端側。例如’當宿主為埃希氏菌屬細菌時,可利 用PhoA訊息序列、OmpT訊息序列以及〇mpA訊息序列等; 當宿主為芽胞桿菌屬細菌時,可利用α -澱粉酶訊息序列及 10 枯草桿菌蛋白酶(subtilicin)訊息序列等;當宿主為酵母菌 時,可利用MFa訊息序列、SUC2訊息序列等;以及當宿主 為動物細胞時,可利用胰島素訊息序列、a-干擾素訊息序 列、抗體分子訊息序列等。 以上所述的這些序列是熟習此項技術者已知的。 15 如本文中所用的,“表現載體”此術語意指任一種重組 型表現系統,其可於活體外(/« Wiro)或活體内(ζ·« Wvo),在 任一宿主細胞中構成地(constitutively)或誘導地(inducibly) 表現依據本發明的核酸編碼序列。該表現載體可為一線性 或環形表現系統,而且涵蓋保持游離基因形式或是被整合 2〇 至宿主細胞的基因組内的表現系統。該表現系統可具有或 不具有自我複製的能力,它可能只會驅使宿主細胞的短暫 表現。 如本文中所用的,“細胞’,、“宿主細胞,,、“轉形宿主細 胞(transformed host cell)”與“重組型宿主細胞(reconibinant 41 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 host cell)”等術語可被互換使用,而且不僅指特定的個體細 胞(individual cells)還包括繼代培養的子代(sub-cultured offsprings)或可能的子代(potential offsprings)。子代細胞可 能在後續世代中因為突變作用或環境影響而發生特定的遺 5 傳修飾(genetic modification),而致使子代細胞事實上可能 與母細胞並不相一致,但子代細胞仍被涵蓋在本文中所用 的術語的範嘴内。 適用於本發明的宿主細胞可以是原核生物細胞 (prokaryotic cells)或真核生物細胞(eukaryotic cells),且為未 10 轉形/轉染的細胞(non-transformed/transfected cells)’ 或是已 被至少一種其它重組型核酸序列轉形/轉染的細胞 (transformed/transfected cells) ° 適用於本發明的原核生物細胞包括,但不限於,源自 於下列的細胞:細菌,例如大腸桿菌(£. 、枯草桿菌 15 (5<3^7/似乳桿菌屬物種、鍵黴 菌屬物稜(Strepiomyces 57?·)以及沙門氏傷寒桿菌 (Salmonella typhi) ’,隻綠 f条(Cyanobacteria) ·,故氣菌 等等。 適用於本發明的真核細胞包含,例如,真菌細胞、原 20 生動物(protozoa)細胞、植物細胞、昆蟲細胞、動物細胞以 及人類細胞。合適的真菌細胞代表例是酵母細胞,例如麵 包酵母菌cereWs/ae)或嗜甲醇酵母菌 。合適的植物細胞是衍生自裸子植物 (gynosperms)或被子植物(angiosperms),以單子葉植物 42 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 (monocots)與雙子葉植物(dic〇ts)為佳,特別是作物(crops), 而且是取自這些植物的根、莖、葉或分生組織(meristem) 專部位’並以原生質體(protoplasts)或療合組織(callus)的形 式被培養。合適的昆蟲細胞代表例是果蠅82細胞以及衍生 5 自秋行軍蟲的 Sf21 細胞與 Sf9細胞。 合適的動物細胞可以是培養的細胞或活體内細胞,且較佳 為脊椎動物細胞,更較佳為哺乳動物細胞,並且是衍生自 動物的腎臟、肝臟、肺臟、卵巢、乳房、皮膚、骨骼、血 液等器官或組織,其中的代表例例如CHO、COS、BHK、 10 HEK-293、Hela、NIH3T3、VERO、MDCK、MOLT-4、Jurkat、 K562、HepG2等等。 適用於進行DNA重組技術的宿主細胞的適當培養基以 及培養條件,在生物技術領域中已被詳知。例如,可將宿 主細胞培養在本技藝中所慣用的發酵生物反應器、搖動燒 15 瓶、試管、微滴盤與平淺培養皿中,且該培養可在適合於 重組型宿主細胞生長的溫度、pH值及氧含量下進行。 根據本發明,術語“轉染(transfection)”可與術語“轉形 (transformation)”交替地使用,並且泛指將一核酸分子被引 進一選定的宿主細胞内的方式。依據本技藝中已知的技 20 術,一核酸分子(例如,一重組型DNA建構物或一重組型載 體)可措由多種技術而被引入至一選定的宿主細胞内,例如 填酸弓或氯化約媒介的轉染作用(transfection)、電穿孔法 (electroporation)、微注射法(microinjection)、粒子撞擊法 (particle bombardment)、脂質體媒介的轉染作用(lip〇s〇rne- 43 1321567 • 第095118228號專利申請案說明書修正頁 修正日期:98年1〇月!日 mediated transfection)、利用細菌喔菌體的轉染作用、利用 反轉錄病毒(retrovirus)或其他病毒[例如,牛痘病毒 (vaccinia virus)或昆蟲細胞的桿狀病毒(baculovirus)]的轉導 作用(transduction)、原生質體融合(pr〇t〇plast fusion)、農桿 5 菌媒介的轉形法transformation)或 其他方法。 要轉形(transform)芽胞桿菌屬細菌時,可以參照,例 如’尤氣於Molecular & General Genetics (1979), Vol· 168 77/等内的方法來進行;要轉形酵母菌時,可以參照,例如, 10 記氣於Methods in Enzymology (1991), Vol. 194, 182-187、 Proc. Natl. Acad. Sci. USA, Vol. 75, 1929 (1978)専内的方法 來進行。要轉形昆蟲細胞或昆蟲時,可以參照,例如,記 載於(5,47_55 "卵幻等内的方法來進行。要 轉形動物細胞時’可以參照,例如Vir〇1〇gy,v〇1 52, 456 15 (1973)等内的方法來進行。 依所使用的載體系統以及依據本發明的核酸編碼序列 的被插入至該載體内的位置,本發明所產生的重組型蛋白 質可以呈一單獨的蛋白質或一融合蛋白質(fusi〇n pr〇tein) 的形式。例如,當依據本發明的核酸編碼序列被插入至一 20包含有-編碼另-蛋白質的基因序列(例如,一報導基因) 的載體内時’若插入的位置使得依據本發明的核酸編碼序 列與該基因序列相連或於端部有部分重疊,就可能有一呈 融合蛋白質形式的重組型蛋白質被表現出來。而若要避免 融合蛋白的活性X到不利影響,可視需要來設計間隔子的 44 貝 修正日期:98年10月1曰 插入。k疋熟習此藝項技術者所詳知且慣用的技術。 依所使用的載體與伤主系統而定,本發明所產生的重 組型蛋白質可被維持在重組型宿主細胞内、被分泌至培養 基内被刀必至胞壁空間(periplasmic space)或被保留在細 5胞膜的外表面上。由本發明方法所生成的重組型蛋白質可 使用多種標準蛋白質純化技術來純化。 主要地,在經轉形的宿主細胞被培養一段時間後,以 習知方法來收集細胞並再散浮於一適當緩衝液内,然後藉 由超音波、溶菌酶(lysozyme)和/或冷凍-溶解法等方式來將 10細胞打破。之後,立即藉由離心分離和/或過濾而製得蛋白 質粗萃取液。緩衝液中亦可含有諸如尿素及鹽酸胍等之蛋 白質改質劑以及諸如Triton Χ·1〇〇之界面活性劑。 當重組型蛋白質被分泌至培養基内時,在培養終止之 後,以習知方法來分開細胞與上清液,並收集上清液。如 15 此所得的培養上清液内所含有的蛋白質的純化處理,可藉 由傳統的蛋白質分離純化技術的組合應用來進行^該等習 知的分離、純化法包括,但不限於:鹽析法(salting out)、 溶劑沉澱法(solvent precipitation)、透析法(dialysis)、超濾 法(ultrafiltration)、凝膠過渡法(gel filtration)、SDS-聚丙婦 20 醯胺凝膠電泳法、等電點電泳法、逆相層析法、陰離子交 換層析法、親和力層析法以及色層焦集法(chromatofocusing) 等等。 較佳地,本發明所生成的重組型蛋白質是“呈實質純質 的形式(in substantially pure form)”被回收。如本文中所用 45 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1日 的,“實質純質的(substantially pure)’’是指一被純化的蛋白 質所具有的純度可使該蛋白質能有效地作為一商業產品。 在本發明的另一個較佳具體例中,申請人利用上述所 得的具有序列辨識編號:27的DNA序列作為模版,並使用下 5 面實施例7的表5中所示的引子Ndelsp-AFP (序列辨識編 號:29)、Kpnl-AFP (序列辨識編號:30)、BamHI-AFP (序列辨 識編號:31)、KpnITAR-AFP (序列辨識編號:32)、 BamHIGDP-AFP (序列辨識編號:33)以及 SpeSalHtagTAA-AFP (序列辨識編號:34),而進一步分別得 10 到3個具有序列辨識編號:35、序列辨識編號:36與序列辨識 編號:37的DNA序列,它們分別編碼一具有不同胺基酸重複 單元數目的抗凍蛋白類似物,亦即抗凍蛋白(AFP)類似物1A (序列辨識編號:38 ’包含有4個抗凍單元)、抗凍蛋白類似物 2A (序列辨識編號:39,包含有8個抗凍單元)以及抗凍蛋白 15 類似物3A(序列辨識編號:40,包含有12個抗凍單元)。 依據本發明,藉由重組DNA技術所得到的抗凍蛋白被 證實具有抑制冰晶形成的能力,而且能以高產率被基因重 組地生成,因而具有供應用於醫藥、食品、各種冷凍冷藏 製品以及其他相關生物技術領域的潛力,包括: 20 (1)组織培養物或細胞株的保存:添加AFP可提高冷凍保 存的存活率; (2) 卵子及精子的冷凍保存; (3) 組織器官移植之保存,增加手術成功率; (4) 臍帶血的保存; 46 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月i曰 (5) 外科手術中以冰晶的“刀型’,取代雷射刀的作用; (6) 應用於食品,例如冰淇淋,以使口感及品質更佳; (7) 應用於水產、肉品工業,以提高冷凍冷藏肉品的品質; (8) 其他需要以冷凍或冷藏方式來保存或運輸的製品,以 5 避免冰晶形成而影響到品質;以及 (9) 各種寒τ地區製品的抗冰晶形成。 本發明將就下面的實施例來作進一步說明,但應瞭解 的是’該等實施例僅是供例示說明用,而不應被解釋為本 發明的實施上的限制。 10 實施例 一般實驗方法與材料: 本發明中所採用的實驗方法以及用於DNA選殖(DNA cloning)的相關技術,是參考本技藝中所詳知的教科書: Sambrook J, Russell DW (2001) Molecular Cloning: A 15 Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York,例如使用限制酶的DNA剪切反應(DNA cleavage reaction by restriction enzymes)、使用 T4 DNA黏接 酶(ligase)的 DNA黏接反應(DNA ligation with T4 DNA ligase)、聚合酶連鎖反應(polymerase chain reaction,PCR)、 20 瓊脂凝膠電泳法(agarose gel electrophoresis)、硫酸十二醋 納-聚丙烯酿胺凝膠電泳(sodium dodecyl sulfate-polyacrylamide gel electrophoresis, SDS-PAGE) 、 西 方墨點 分析(Western blotting)和質體轉形法(plasmid transformation)等,而這些技術都是熟悉此項技術人士可根 47 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1日 據本身的專業素養來實施者。 例如,於下面實施例中所使用的質體轉形法是以電轉 形法(electrotransformation)來進行。此外,細胞密度是使用 分光光度計(V530, Jasco)測量,測量波長定為600 nm,所得 5 到的吸光值紀錄為OD600。蛋白質濃度分析是使用蛋白質分 析試劑(Protein Assay Reagent, BioRad Co.),並以影像分析 儀(GAS9000, UVItec)來分析定量經凝膠電泳的蛋白質。 此外,本發明使用重疊延伸聚合酶連鎖反應法 (overlapping-extension polymerase chain reaction, OEPCR) 10 來合成出編碼本發明的抗凍蛋白類似物的DNA序列,其中 所使用的材料包括:核苷酸(dNTPs)(Protech Technology. Enterprise CO., Ltd., Taiwan)、P/w DNA聚合酶 10X反應緩衝 液[i°/w DNA polymerase 1 OX reaction buffer,含有200mM Tris-HCl (pH 8.8,25〇C),100 mM KC1,100 mM (NH4)2S04, 15 20 mM MgS04, 1.0% Triton® X-100與 1 mg/mL不含核酸酶 的BSA (nuclease-free BSA)]以及尸/m DNA聚合酶是購自於 Promega,Madison, USA,引子是由 GENSET Corp.,La Jolla, CA,USA所提供,而所用的儀器為perkin-Elmer GeneAmp PCR System 2400 thermocycler (Perkin-Elmer Corp., 20 Wellesley,MA,USA)。 抗凍蛋白的活性分析方法 抗床蛋白具有降低溶液陳結點、抑制冰晶再結晶(ice recrystallization inhibition)以及修飾冰晶構形(morphology) 之能力。在本案中’申請人藉由測定依據本發明的抗凍蛋 48 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 白類似物在抑制冰晶再結晶(ice recrystallization inhibition) 以及修飾冰晶構形(morphology)之能力來評估該抗康蛋白 類似物的活性。於實驗中,利用LNP冷卻系統(cooling system)以及溫度控制器 TMS94 (temperature programmer 5 TMS94)來進行待測樣品的冷卻與溫度控制。此處所用的 LNP冷卻系統是由LNP94液態氮泵(LNP94 liquid nitrogen pump)以及2公升液態氮桶(2 Litre dewar)組合而成,於使用 之前將液態氮裝入至液態氮桶中。 測試抗凍蛋白抑制冰晶再結晶之方法如下所述:首先 10取1 pL之抗凍蛋白質溶液或緩衝液滴於玻璃載玻片上,然 後覆蓋以蓋玻片。將待測樣品置入至Linkam BCS196冷凍平 台(freezing stage)中,利用LNP冷卻系統以及溫度控制器 TMS94來進行溫度控制。先使冷凍平台中的樣品溫度以 90°C/分鐘的速度驟降至_4〇。(:,並維持於此溫度下歷時1分 15鐘。之後,以90°C/分鐘的速度升溫至-7eC,並維持於此溫 度下歷時60分鐘。利用〇lympus BX41顯微鏡搭配Roper Scientific (USA)數位攝影機,於1〇χ放大倍數下觀察被形成 於測試樣品内的冰晶的大小。 測試抗康蛋白修飾冰晶構形的方法如下所述:首先取2 2〇 的抗凍蛋白質溶液或緩衝液滴於玻璃載玻片上,然後覆 蓋以蓋玻片。將待測樣品置入至Linkarn BCS196冷凍平台 中,並以90 C/分鐘的速度將樣品的溫度驟降至_4〇°c,並維 持於此溫度下歷時丨分鐘。之後,以9〇。〇/分鐘的速度升溫 至單一冰晶开> 成的溫度,接而連續降溫以使冰晶成長。利 49 修正日期:98年10月1曰 第095118228號專利申請案說明書修正頁 用Olympus BX41顯微鏡搭配R〇per 偷⑽數位攝 影機’於1GX放大倍數下觀察測試樣品㈣冰晶構形。 抗凍蛋白熱安定性的分析方法 10 準備100叫的抗康蛋白質溶液(濃度0.4 mg/mL ’ pH 8·〇),並於HKTC下進行加熱處s。經加則小時或2小時之 後’取出2G μί的抗;東蛋白溶液並予以置放於冰上。以上述 的方法來分析抗終白修飾冰晶構形的能力。當冰晶的構 形為雙錐形體時’表示抗;東蛋白活性未受加熱影響;當冰 晶的構形為六角形時,表示抗終白活性下降;當冰晶的 構形為圓形時,表示抗凍蛋白活性喪失。 抗來蛋白pH值安定性的分析方法 利用Microcon YM-3離心管(Millip〇re,USA)來置換抗 康蛋白溶液的成份,以使抗凍蛋白溶液的?11值達到實驗中 所要求的2、4、6、8、10與12。處理方式如下所述:取400 15 的抗凍蛋白質溶液(濃度為0.4〇^/11^呷118.0)置於一個In a preferred embodiment of the present invention, the applicant utilizes an overlap-extension polymerase chain reaction (OEPCR) to synthesize a DNA encoding the above-described antifreeze protein analog. 35 1321567 Patent Application No. 095118228 Manual revision page revision period: October 1st, 1998 sequence. OEPCR is a method for preparing a chimeric DNA sequence by a polymerization-free linkage reaction method, in which the specificity of a pCR primer and the control of an anneaiing temperature can be skillfully controlled. Two or more 5 or more DNA fragments originally separated are spliced into one chimeric DNA sequence. In addition, by using the specificity of the end of the PCR primer and the control of the binding temperature, it is also possible to introduce a DNA fragment to be added, such as a restriction enzyme cutting site, a ribosome binding site (RBS). , promoter sequences, and the like. 10 Further, the 'OEPCR was carried out by performing amplification of DNA using a conventional sputum DNA polymerase in combination with P/w DNA polymerase. DNA aggregation has a proof-reading function that reduces the chance of errors in DNA synthesis. This method has been utilized to synthesize a number of DNA coding sequences which are limited to synthetic lengths. In a preferred embodiment of the invention, the Applicant uses a preferred codon of Bacillus subtilis to generate a DNA fragment encoding the above-described anti-binding protein analog 1 and purine, using the primers shown in Table 2 below. It was synthesized by performing 0EPCR as shown in FIG. 2. Referring to Figure 2, four primers having complementarity between their sequences can be used to generate a PCR product encoding the antifreeze proteins 20 and I shown in Figure 1. Reference numerals 2 and 3 denote template primers, respectively, which are complementary to each other at their 3' ends. For example, reference numeral 2 may be the reference AFP1 (sequence identification number: 25), and reference numeral 3 may be the reference AFP2 (sequence identification number: 26). Reference numeral 1 denotes an amplification initiator or a forward modification of a template primer for amplifying the reference numeral 2. Amendment date: October 1, 1998, a forward primer. For example, the reference numeral 1 may be the primer AFP-BamHI (sequence identification number: 22) or the primer AFP-SphI (sequence identification number: 23) for amplifying the primer AFP1. Reference numeral 4 denotes an extension primer or a forward primer for amplifying the template primer of the numeral 3. For example, reference numeral 4 may be the primer AFP-SS (sequence identification number: 24) for amplifying the primer AFP25. These amplification primers can be designed to have restriction enzyme cutting sites. When the PCR reaction begins, the two-template primers (labels 2 and 3) will first stick and extend (using 3' to 5' DNA as a template and extending from 5' to 3), thus generating full-length DNA. Thereafter, the amplification primers (reference numerals 1 and 4) start to mass-amplify the DNA fragment with the full-length 10 DNA as a template. Table 2. Primer name for the synthesis of the AFPI gene. Nucleotide sequence (5^3·) AFP-BamHI BamHl 5'-caatcag£ai££gatacagcgtcagatgcggcagcg-3' (SEQ ID NO: 22) AFP-SphI Sphl 5 '-aatttag£ai^£aagatcctgatacagcgtcagatgcggca-3' (SEQ ID NO: 23) AFP-SS Sail Spel 5'-atttag This £g^£ta£itattagtggtggtggtggtggtgtcttgcg-3·(Serial Identification Number: 24) AFPI 5'-gatcctgatacagcgtcagatgcggcagcggctgcggctcttactgcagctactgcggctcttactgcagctaacgcaaaag Ccgcagctgaactgacggctgccaatgcgaaggcg-3·(SEQ ID NO: 25) AFP2 5'-ttagtggtggtggtggtggtgtcttgcggtggcagcggctgcagcagcagcgttagctgctg tgagctcggccgccgccttcgcattggcagccgt-3·(Sequence ID: 26) Note: The restriction enzyme cleavage site located in the primer is underlined or framed, where SWI and The cutting address has been re-examined. Thus, the present invention synthesizes PCR amplification products which each substantially correspond to the DNA sequence encoding the above-mentioned anti-frozen protein analog 1 and the plant, which have the sequence identification number: 27 and the sequence identification number: 28, respectively. The nucleic acid sequence. A nucleic acid coding sequence according to the invention can be carried in an expression cassette. "Performance" is a synthetically produced or recombinantly produced nucleic acid construct. The term "synthetically or recombinantly produced nucleic acid construct" is disclosed in the specification of the modified version of the specification of the patent application No. 095118228. , with a series of nucleic acid elements to allow transcription and translation of a particular nucleic acid carried in the target sputum within a target cell. The expression 依据 according to the invention comprises a promoter sequence operably linked upstream of the nucleic acid coding sequence. "Operably linked" means that a first sequence is placed sufficiently close to a second sequence ' such that the first sequence can affect the region controlled by the second sequence 10 or the second sequence. For example, a promoter sequence is operably linked to a gene sequence 'and is typically at position 5 of the gene sequence, The gene sequence is rendered under the control of the promoter sequence. In addition, a regulatory sequence can be operably linked to a a subsequence that enhances the ability of the promoter sequence to promote transcription. In this case, the regulatory sequence is often located at position 5 of the promoter sequence. The term "promoter sequence" refers to a DNA sequence. , which is usually located in front of a gene present in a DNA polymer, and provides a site for initiating transcription of the gene to generate mRNA (site f〇r initiati〇n of the transcription of said gene Into mRNA) The promoter sequence suitable for use in the present invention may only be adapted to initiate the expression of a nucleic acid coding sequence according to the invention in a selected host cell, which may be derived from any of the following: Virus, bacteriophage, bacterial cell, yeast cell, fungal cell, algae cell, plant cell, insect cell, animal cell, and human cell, and may be a constitutive promoter 38 1321567 Patent No. 095118228 Patent Application Revision Revision Date : October 1 曰 I * (constitutive promoter) or an inducible promoter (inducible promoter). The promoter can also be modified A synthetic promoter of any native promoter sequence. For example, when the host is an Escherichia bacterium, the promoters available for 5 include, but are not limited to: T5 promoter, T7 promoter, iac promoter, T7A1 Promoter, /ac promoter, irp promoter, ire promoter, recA promoter, lpp promoter, ara Fan 4Z) promoter and promoter; etc.; when the host is Bacillus (10)) bacteria, can be used Promoters include, but are not limited to, SPO1 promoter, SP02 promoter, penP 10 promoter, etc.; and when the host is a yeast, available promoters include, but are not limited to: PH05 promoter, PGK promoter, GAP Promoter and ADH promoter, etc. When the host is an insect cell, useful promoters include, but are not limited to, a polyhedrin promoter and a P10 promoter. When the 15 host is an animal cell, useful promoters include, but are not limited to, the SRa promoter, the SV40 early promoter, the RSV-promoter, the HIV LTR promoter, the HSV-TK promoter, the CMV promoter, and CMV- HSV thymidine kinase promoter and the like. When the host is a plant cell, a usable promoter includes, for example, a 35S 2〇 CaMV promoter, an actin promoter, a ubiquitin promoter, and the like. According to the invention, the promoter sequence is preferably selected from the group consisting of T5, T7, Pjpac, P/flC, Pw, Pw, Pveg, P..., Pw, Pw, Pflra, Pw and Pw And the promoters derived from them. 39 1321567. 904118228 Patent Application Revision Revision Date: October 1, 1998 According to the present invention, a representation of a nucleic acid coding sequence according to the present invention can be contained in a vector to form a recombinant Performance carrier. Vectors suitable for use in the present invention include vectors used in general genetic engineering techniques, such as: bacteriophages, such as sputum bacteria; plastids 5 such as plastids from coliforms (eg, pBR322, pBR325) , pUC12, pUC13, pQE-30, pET12, pET30), a shuttle vector from Bacillus subtilis (such as pUBllO, pTP5, pC194), Escherichia coli (five co/z·) and Bacillus subtilis (shuttle) Vector) pHY300PLK 'plasty from yeast (eg pSH19, pSH15); adhesion. 10 masos (cosmids); viruses (viruses), such as vaccinia viruses, retroviruses, or such as An animal virus of the baculovirus and the like. Vectors suitable for use in the present invention may contain other expression control elements, such as a transcription starting site, a transcription termination site, a ribosome binding site, An RNA splicing site, a polyadenylation site, and a translation termination site. Vectors suitable for use in the present invention may further comprise additional regulatory elements, such as transcription/translating enhancer sequences, enhancer sequences, and at least one suitable for sorting the vector under appropriate conditions. Marker gene or reporter gene. Marker genes useful in the present invention include, for example, a dihydrofolate reductase gene for use in eukaryotic cell cultures, and a G418 or neomycin resistance gene, and the specification of the patent application No. 40 1321567, No. 095118228 Amendment page correction period: October 1st, 1998, ampicillin, streptomycine, tetracycline or kanamycine resistance genes in E. coli and other bacterial cultures . Furthermore, a vector suitable for use in the present invention may further comprise a nucleic acid sequence encoding a secretion signal 5 located at the 5' end of the nucleic acid coding sequence according to the present invention such that a secretion message sequence is present in the expressed recombinant form. The N-terminal side of the protein. For example, when the host is a bacterium belonging to the genus Escherichia, the PhoA message sequence, the OmpT message sequence, and the 〇mpA message sequence can be used; when the host is a bacterium belonging to the genus Bacillus, the α-amylase message sequence and 10 Bacillus subtilis can be utilized. The protease (subtilicin) message sequence, etc.; when the host is a yeast, the MFa message sequence, the SUC2 message sequence, etc.; and when the host is an animal cell, the insulin message sequence, the a-interferon message sequence, the antibody molecule message can be utilized. Sequence, etc. The sequences described above are known to those skilled in the art. As used herein, the term "expression carrier" means any recombinant expression system that can be constructed in vitro (/« Wiro) or in vivo (ζ·« Wvo) in any host cell ( The nucleic acid coding sequence according to the invention is expressed constitutively or inducibly. The expression vector can be a linear or circular expression system and encompasses expression systems that maintain the free gene form or are integrated into the genome of the host cell. The expression system may or may not have the ability to self-replicate, it may only drive the transient performance of the host cell. As used herein, "cell", "host cell,", "transformed host cell" and "recombinant host cell" (reconibinant 41 1321567 patent application specification revision page amended period) : "98 October 1 host cell)" and the like can be used interchangeably, and not only refers to specific individual cells but also sub-cultured offsprings or potential progeny (potential) Offsprings). The progeny cells may undergo specific genetic modification in subsequent generations due to mutation or environmental influences, and the daughter cells may in fact not coincide with the mother cells, but the daughter cells are still covered. Within the scope of the term used herein. The host cell suitable for use in the present invention may be a prokaryotic cell or an eukaryotic cell and is a non-transformed/transfected cell or has been At least one other recombinant nucleic acid sequence transformed/transfected cells ° Prokaryotic cells suitable for use in the present invention include, but are not limited to, cells derived from bacteria such as E. coli (£. , Bacillus subtilis 15 (5 < 3 ^ 7 / Lactobacillus species, genus genus (Strepiomyces 57?) and Salmonella typhi (Salmonella typhi), only green f (Cyanobacteria), so gas Bacteria, etc. Eukaryotic cells suitable for use in the present invention include, for example, fungal cells, protozoa cells, plant cells, insect cells, animal cells, and human cells. Representative examples of suitable fungal cells are yeast cells. For example, baker's yeast cereWs/ae) or methanolophilic yeast. Suitable plant cells are derived from gymnosperms or angiosperms, with a single Leaf plant 42 1321567 095118228 Patent application specification revision page Revision date: October 1 曰 (monocots) and dicots (dic〇ts) are preferred, especially crops (crops), and are taken from these plants Roots, stems, leaves or meristems are specialized in 'protoplasts or callus' forms. Suitable insect cell representatives are Drosophila 82 cells and derived from Sf21 cells and Sf9 cells of the autumn army insects. Suitable animal cells may be cultured cells or cells in vivo, and preferably vertebrate cells, more preferably mammalian cells, and are derived from animals, liver, liver, Organs or tissues such as lungs, ovaries, breasts, skin, bones, blood, etc., such as CHO, COS, BHK, 10 HEK-293, Hela, NIH3T3, VERO, MDCK, MOLT-4, Jurkat, K562, HepG2, etc. Suitable media and culture conditions suitable for use in host cells for DNA recombination techniques are well known in the art of biotechnology. For example, host cells can be cultured in the art. Fermentation bioreactor with shaking burning 15 flasks, test tubes, microtiter dishes with flat shallow dish, and the culture may be suitable for recombinant host cell growth temperature, pH, and lower oxygen content. In accordance with the present invention, the term "transfection" can be used interchangeably with the term "transformation" and generally refers to the manner in which a nucleic acid molecule is introduced into a selected host cell. According to techniques known in the art, a nucleic acid molecule (e.g., a recombinant DNA construct or a recombinant vector) can be introduced into a selected host cell by a variety of techniques, such as filling an acid bow or Transfection, electroporation, microinjection, particle bombardment, transfection of liposome mediators (lip〇s〇rne- 43 1321567) • Revision No. 095,118,228, the date of revision of the patent application specification: 98 years of mediated transfection), transfection with bacterial bacillus, use of retrovirus or other viruses [eg, vaccinia virus (eg, vaccinia virus) Vacnation (transduction) of vaccinia virus or baculovirus of insect cells, transformation of protoplasts (pr〇t〇plast fusion), transformation of agrobacterium 5 strains or other methods. In order to transform a Bacillus bacterium, it can be referred to, for example, 'Using in Molecular & General Genetics (1979), Vol. 168 77/, etc.; when transducing yeast, reference can be made. For example, 10 notes are performed by Methods in Enzymology (1991), Vol. 194, 182-187, Proc. Natl. Acad. Sci. USA, Vol. 75, 1929 (1978). For the transformation of insect cells or insects, refer to, for example, the method described in (5, 47_55 " illusion, etc.. When you want to transform animal cells, you can refer to it, for example, Vir〇1〇gy, v〇 1 52, 456 15 (1973), etc. The recombinant protein produced by the present invention may be one according to the vector system used and the position of the nucleic acid coding sequence according to the present invention inserted into the vector. a form of a separate protein or a fusion protein (fusi〇n pr〇tein). For example, when a nucleic acid coding sequence according to the present invention is inserted into a 20-containing gene sequence encoding a further protein (for example, a reporter gene) If the position of the insertion is such that the nucleic acid coding sequence according to the present invention is linked to the gene sequence or partially overlaps at the end, a recombinant protein in the form of a fusion protein may be expressed. The activity X of the protein is adversely affected. The 44-square correction date of the spacer can be designed as needed: October 1st, 1998. Insertion is well known to those skilled in the art. Techniques for use. Depending on the vector used and the host system, the recombinant protein produced by the present invention can be maintained in a recombinant host cell, secreted into the medium, and crazed to a periplasmic space or It is retained on the outer surface of the fine membrane 5. The recombinant protein produced by the method of the invention can be purified using a variety of standard protein purification techniques. Primarily, after the transformed host cell has been cultured for a period of time, it is known The method collects the cells and then floats them in an appropriate buffer, and then breaks the 10 cells by means of ultrasound, lysozyme and/or freeze-dissolution. Immediately thereafter, by centrifugation and / Or filter to obtain a crude protein extract. The buffer may also contain a protein modifier such as urea and guanidine hydrochloride, and a surfactant such as Triton®. When the recombinant protein is secreted into the medium, After the termination of the culture, the cells and the supernatant are separated by a conventional method, and the supernatant is collected. For example, the protein contained in the culture supernatant obtained is 15 The purification treatment can be carried out by a combination of traditional protein separation and purification techniques. The conventional separation and purification methods include, but are not limited to, salting out, solvent precipitation, Dialysis, ultrafiltration, gel filtration, SDS-polyacrylamide 20 guanamine gel electrophoresis, isoelectric point electrophoresis, reverse phase chromatography, anion exchange chromatography Method, affinity chromatography, chromatofocusing, etc. Preferably, the recombinant protein produced by the present invention is recovered "in a substantially pure form". As used herein, the amendments to the specification of the patent application No. 095,118, 228, filed on November 1, 1998, "substantially pure" refers to the purity of a purified protein. The protein can be effectively used as a commercial product. In another preferred embodiment of the present invention, the applicant uses the DNA sequence having the sequence identification number: 27 obtained above as a template, and uses the table of the fifth embodiment. The primers shown in 5 are Ndelsp-AFP (sequence identification number: 29), Kpnl-AFP (sequence identification number: 30), BamHI-AFP (sequence identification number: 31), KpnITAR-AFP (sequence identification number: 32), BamHIGDP-AFP (SEQ ID NO: 33) and SpeSalHtagTAA-AFP (SEQ ID NO: 34), and further obtain 10 to 3 DNAs with sequence identification number: 35, sequence identification number: 36 and sequence identification number: 37, respectively. Sequences, which respectively encode an antifreeze protein analog having a different number of repeating units of amino acid, ie, antifreeze protein (AFP) analog 1A (SEQ ID NO: 38 ' contains 4 antifreeze units), Protein analog 2A (SEQ ID NO: 39, containing 8 antifreeze units) and antifreeze protein 15 analog 3A (SEQ ID NO: 40, containing 12 antifreeze units). According to the present invention, by recombination The antifreeze protein obtained by DNA technology has been confirmed to have the ability to inhibit the formation of ice crystals, and can be genetically produced in high yield, and thus has potential for supply in medicine, food, various frozen and frozen products, and other related biotechnology fields. Including: 20 (1) preservation of tissue culture or cell strain: addition of AFP can improve the survival rate of cryopreservation; (2) cryopreservation of eggs and sperm; (3) preservation of tissue and organ transplantation, increase the success rate of surgery; (4) Preservation of cord blood; 46 1321567 Revision No. 095118228 Patent application revision page Revision period: October 1998 i曰(5) In the surgical operation, the role of the laser knife is replaced by the "knife type" of ice crystal; (6) Applied to foods, such as ice cream, to make the taste and quality better; (7) Applied to the aquatic products and meat industry to improve the quality of frozen and frozen meat; (8) Other needs to be frozen Refrigerated way to save or transport products, in order to avoid the formation of ice crystals 5 and affect the quality; and (9) anti-ice crystals form a variety of cold τ regional products. The invention will be further described in the following examples, but it should be understood that the examples are merely illustrative and are not to be construed as limiting. 10 EXAMPLES General Experimental Methods and Materials: The experimental methods employed in the present invention, as well as related techniques for DNA cloning, are referenced to textbooks well known in the art: Sambrook J, Russell DW (2001) Molecular Cloning: A 15 Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York, for example, DNA cleavage reaction by restriction enzymes, DNA adhesion using T4 DNA ligase DNA ligation with T4 DNA ligase, polymerase chain reaction (PCR), 20 agarose gel electrophoresis, sodium dodecanoate-polyacrylamide gel electrophoresis (sodium) Dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), western blotting and plasmid transformation, etc., and these techniques are all familiar to those skilled in the art, and can be used as a patent of No. 47 1321567 No. 095118228. The amendment date of the application manual revision date: October 1, 1998, according to its professional quality to implement. For example, the plastid transformation method used in the following examples is carried out by electrotransformation. In addition, the cell density was measured using a spectrophotometer (V530, Jasco) with a measurement wavelength of 600 nm, and the resulting absorbance value of 5 was recorded as OD600. The protein concentration analysis was performed by using a protein analysis reagent (Protein Assay Reagent, BioRad Co.) and analyzing the gel electrophoresed protein by an image analyzer (GAS9000, UVItec). Furthermore, the present invention uses an overlap-extension polymerase chain reaction (OEPCR) 10 to synthesize a DNA sequence encoding an antifreeze protein analog of the present invention, wherein the materials used include: nucleotides ( dNTPs) (Protech Technology. Enterprise CO., Ltd., Taiwan), P/w DNA polymerase 10X reaction buffer [i ° / w DNA polymerase 1 OX reaction buffer, containing 200 mM Tris-HCl (pH 8.8, 25 〇 C ), 100 mM KC1, 100 mM (NH4)2S04, 15 20 mM MgS04, 1.0% Triton® X-100 with 1 mg/mL nuclease-free BSA (nuclease-free BSA)] and cadaveric/m DNA polymerase It was purchased from Promega, Madison, USA, and the primers were supplied by GENSET Corp., La Jolla, CA, USA, and the instrument used was perkin-Elmer GeneAmp PCR System 2400 thermocycler (Perkin-Elmer Corp., 20 Wellesley, MA). ,USA). Anti-Freeze Protein Activity Assays Anti-bed proteins have the ability to reduce solution seizures, inhibit ice recrystallization inhibition, and modify ice crystal morphology. In the present case, the Applicant determines the anti-freezing egg 48 1321567 according to the present invention. Amendment page of the specification of the patent application No. 095118228. Date of revision: October 1998, the white analogue inhibits ice recrystallization inhibition and The ability of the ice crystal morphology to modify the activity of the anti-canon analog is evaluated. In the experiment, the cooling and temperature control of the sample to be tested was performed using an LNP cooling system and a temperature controller TMS94 (temperature programmer 5 TMS94). The LNP cooling system used here is a combination of a LNP94 liquid nitrogen pump and a 2 liter liquid nitrogen drum (2 Litre dewar). The liquid nitrogen is charged into a liquid nitrogen drum before use. The method for testing the antifreeze protein to inhibit recrystallization of ice crystals is as follows: First, 10 μL of antifreeze protein solution or buffer droplets are placed on a glass slide, and then covered with a coverslip. The sample to be tested was placed in a Linkam BCS196 freezing stage, and the temperature control was performed using the LNP cooling system and the temperature controller TMS94. The temperature of the sample in the freezing platform was first lowered to _4 以 at a rate of 90 ° C / min. (:, and maintain this temperature for 1 minute and 15 minutes. After that, heat up to -7eC at 90 °C / minute and maintain it at this temperature for 60 minutes. Use 〇lympus BX41 microscope with Roper Scientific (USA The digital camera observes the size of the ice crystals formed in the test sample at 1 〇χ magnification. The method for testing the anti-Kein modified ice crystal configuration is as follows: first take 2 2 抗 antifreeze protein solution or buffer Drop on glass slides, then cover with coverslips. Place the sample to be tested into the Linkarn BCS196 freezing platform and drop the temperature of the sample to _4〇°c at 90 C/min and maintain At this temperature, it lasts for a few minutes. After that, it is heated to a temperature of 9 〇 〇 / min to a single ice crystal opening temperature, and then continuously cooled to grow ice crystals. Lee 49 Revision date: October 1, 1998 No. 095,118,228 patent application revision page with Olympus BX41 microscope with R〇per stealing (10) digital camera 'observation test sample (4) ice crystal configuration at 1GX magnification. Analysis method for anti-freeze protein thermal stability 10 Prepare 100 anti-Kang protein solution (concentration 0.4 mg/mL 'pH 8 · 〇), and heat it at HKTC. After adding hour or 2 hours, 'take out 2G μί of anti-; East protein solution and give Placed on ice. Analyze the ability to modify the configuration of ice crystals by the above method. When the configuration of ice crystals is double cone, 'represents resistance; East protein activity is not affected by heating; when the configuration of ice crystals is In the case of hexagons, it indicates a decrease in anti-whitening activity; when the configuration of ice crystals is circular, it indicates loss of antifreeze protein activity. The analytical method for pH stability of anti-proteins utilizes Microcon YM-3 centrifuge tubes (Millip〇re, USA) to replace the components of the anti-conne protein solution so that the ?11 value of the antifreeze protein solution reaches the required 2, 4, 6, 8, 10, and 12 in the experiment. The treatment is as follows: take the resistance of 400 15 Frozen protein solution (concentration 0.4〇^/11^呷118.0) placed in a
Microcon ΥΜ-3離心管中,於i4〇〇〇Xg、代的條件下進行離 心以將溶液濃縮至50 pL的體積β之後,加入350 μί的特定 pH值的緩衝液,繼續離心,俾以濃縮至5〇 的體積。重複 2次加入緩衝液以及離心的動作。最後,將濃縮的液體與350 2〇 的緩衝液混合並置放於冰上。以前述方法來分析抗凍蛋 白修飾冰晶構形的能力。 抗凌蛋白最小抑制濃度(minimal inhibition concentration) 的之分析方法In a Microcon®-3 centrifuge tube, centrifuge at i4〇〇〇Xg, substituting to concentrate the solution to a volume of 50 pL, then add 350 μί of a specific pH buffer, continue centrifugation, and concentrate. To a volume of 5 inches. The buffer addition and centrifugation were repeated twice. Finally, the concentrated liquid was mixed with 350 2 Torr of buffer and placed on ice. The ability of the antifreeze protein to modify the ice crystal configuration was analyzed as described above. Analytical method for minimal inhibition concentration of anti-linguistic protein
有關抗凍蛋白最小抑制濃度的分析是依照GM 50 1321567 第095118228號專利申請案說明書修正f 修正日期:98年10月1日The analysis of the minimum inhibitory concentration of the antifreeze protein is in accordance with the specification of the GM 50 1321567 Patent Application No. 095118228. Revision date: October 1, 1998
Mueller et αί· (1991),J. Biol. Chem·,266:7339-7344所遂的 方法並加以修飾。抗凍蛋白溶液經緩衝液適當稀釋後,使 濃度落在400肫/吣〜1〇 pg/pL之内,並以前述方法來分析 抗凍蛋白抑制冰晶再結晶的能力。當樣品内的冰晶較為細 5微時,代表此濃度下的抗凍蛋白具有抗凍活性;反之,若 冰晶明顯成長時,代表此濃度下的抗凍蛋白不具有抗凍活 性。以冰晶開始明顯增大的濃度作為此抗凍蛋白的最小抑 制濃度。 實施例1.質體載體PRP_AFP的構築 10 質體載體PRP-AFP是藉由將一編碼本發明的抗凍蛋白 類似物1的DNA序列(序列辨識編號:27)插入至一質體載體 pRP内而被形成,其構築過程說明如下。 I ·質體載體pRP的構築: 質體載體pRP是一穿梭載體,它的構築流程被顯示於圖 15 3,其中使用到載體pEX600A以及載體pEX500A。 載體PEX600A以及載體pEX500A的構築是藉由將兩個 來自於嗜鹼性枯草桿菌YaB (alkalophilic 5“以7/奶YaB) (KC.Mueller et αί· (1991), J. Biol. Chem., 266: 7339-7344, and modified. The antifreeze protein solution was appropriately diluted with a buffer to a concentration of 400 肫 / 吣 ~ 1 〇 pg / pL, and the ability of the antifreeze protein to inhibit recrystallization of ice crystals was analyzed by the aforementioned method. When the ice crystals in the sample are 5 μ fine, the antifreeze protein at this concentration has antifreeze activity; on the contrary, if the ice crystals grow significantly, the antifreeze protein at this concentration does not have antifreeze activity. The concentration at which ice crystals begin to increase significantly is used as the minimum inhibitory concentration of this antifreeze protein. Example 1. Construction of plastid vector PRP_AFP 10 plastid vector PRP-AFP was inserted into a plastid vector pRP by encoding a DNA sequence encoding the antifreeze protein analog 1 of the present invention (SEQ ID NO: 27). It is formed, and its construction process is explained as follows. I. Construction of plastid vector pRP: The plastid vector pRP is a shuttle vector, and its construction flow is shown in Fig. 153, in which the vector pEX600A and the vector pEX500A are used. The vector PEX600A and the vector pEX500A were constructed by taking two from the basophilic Bacillus subtilis YaB (alkalophilic 5" to 7/milk YaB) (KC.
Tsai et al. (J983),Biochem. Int·,7:577-583)(由陽明大學察 英傑教授所慷慨提供)的鹼性彈性蛋白酶基因(alkaline 20 elastase gene, ale)[Ryuta Kaneko et al. (1989), J. Bacteriol. 777..523U236, NCBI寄存編號M28537 (NCBI accession no. M28537)]的不同的DNA片段分別插入至大腸桿菌 co//)與枯草桿菌似如’/⑷的一個穿梭 載體(shuttle vector) pHY300PLK (Takara Shuzo Co·,Tokyo, 51 1321567 修正日期:98年10月1曰 第095118228號專利申請案說明書修正頁 Japan)内而被形成。 主要地,一攜帶有該a/e基因的質體pEX301被建立 加心邮知扣从"财汐,如上述)。該基因可被區分 為一個區域刀別疋(結構基因)、的上游區 5域)以及的下游區域)。該質體PEX301上的β/e基因 的起始密碼子(initiation codon)接而從“ttg”被遺傳工程化成 為“atg”,同時位於該起始密碼子之前的3個核苷酸由“gaa,, 被改變為“cat”而於該處引入一個可供基因選殖之用的 切割位址,而得到一衍生質體ρΕΧ3〇1Α。 10 之後,利用選定的限制酶來處理該質體pEX301A上的 or/e基因而得到一個o/eC-a/eE片段以及一個片段,繼而 將這兩個DNA片段分別植入至載體pHY300PLK内,而得到 載體pEX500A以及載體pEX600A,其中載體pEX500A較 pEX600A在α/eE片段的下游處多了 一個α/eC片段(參照1994 15 年由國立陽明大學生物化學研究所的李耀成所著述的碩士 論文,名稱為“嗜驗性YaB之驗性彈性蛋白酶研究⑴ 酵素基質特異性之蛋白工程(Π)在仰如仏DB104内 之基因表現”,指導教授為蔡英傑教授)。該fl/eC片段的功能 未明,其内可能具有一轉錄終止位址(transcription 20 terminatin site) ° 藉由PCR並使用載體PEX600A作為模版(tempalte)而擴 增出一段包含有α/eE啟動子-SD序列-訊息胜肽編碼序列 (aleE promoter-SD sequence-signal peptide coding sequence) 的DNA序列,其中被用來擴增該DNA序列所用的引子組以 52 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 及PCR操作條件如表3所示,以及其中在該PCR引子組的設 計上’於MeE啟動子的上游處加有一個五切割位址 CEcoAI cutting site),以及於訊息胜肽編碼序列的下游處加 入有一個多重選殖位址(multiple cloning site, MCS),裡面含 5有5個供選殖用的限制酶切割位址:5撕1«-5>7/21-5^1-瓜£?1-印eI(5’—3’),其中&ci與办〇i的切割位址有重疊。 表3 引子名稱 核苷酸序列(5’·3·) 前向引子 pRP-£coi?I £coRI 5’-tagactgaMl£gtatatttcccaatagctaaaaaggtttcc-3丨(序列辨識編號:41) 反向引子 pRP-MCS Spel Sad Sphl BamHl 5*-taaatcactaet|ctceaektca2catect2eatccctc22ctPcttptpr,patr-V ^ 年 5ii 辨 Xhol 識編號:42) PCR條件:94°C下2分鐘,1個循環(CyCle) ; 94°C下30秒、56°C下1分鐘又30 秒、72°C下1分鐘,35個循環;以及72°C下7分鐘,1個循環》 PCR產物 taeacteaattcetatatttcr.rafltapctaaaaapgmr.rraatarraAiingagttQ^^flii^gi^ attttagattaccagctgcgcaggttggaacattttgaggaggtataaccatatgaataagaaaatgg ggaaaattgttgccggaacagcactaattatatcagtagcatttagttcatcgatcecacaaecagc cgag££M^aacatpcteadctceap|actaetgattta i 庠列辨識焰锗 m 註:位於引子内的限制酶切割位址被劃底線或劃框標示出,其中^^與 ΧΑοΙ的切割位址有重疊》 10 上述所得到的PCR產物(序列辨識編號:43)於其nts 123-203處編碼一個衍生自嗜鹼性枯草桿菌YaB鹼性彈性蛋 白酶的訊息胜肽,以及於其nts 108-113處有一個SD序列。 使用限制酶五cMIASpel來切除掉載體pEX500A内的 α/eE基因,而由此所得到的切割產物接而與上面所得到的 15 擴增產物接合(ligate)。之後,所形成的接合產物(ligated product)被轉形至被培育於含有20 pg/mL胺苄青黴素Tsai et al. (J983), Biochem. Int., 7:577-583) (alkaline 20 elastase gene, ale) (Ryuta Kaneko et al., generously provided by Professor Cha Yingjie from Yangming University) (1989), J. Bacteriol. 777..523U236, NCBI accession number M28537 (NCBI accession no. M28537)] different DNA fragments inserted into E. coli co//) and Bacillus subtilis like a shuttle of '/(4) The shuttle vector pHY300PLK (Takara Shuzo Co., Tokyo, 51 1321567, revised date: October 2014, No. 095118228, patent application specification page, Japan) was formed. Primarily, a plastid pEX301 carrying the a/e gene was established to add deductions from the "Finance, as described above". The gene can be divided into a region (a structural gene), an upstream region 5 domain, and a downstream region). The initiation codon of the β/e gene on the plastid PEX301 is then genetically engineered from "ttg" to "atg", while the three nucleotides preceding the start codon are " Gaa,, was changed to "cat" and a cleavage site for gene selection was introduced there to obtain a derivative plasto ρΕΧ3〇1Α. 10 Then, the plastid was treated with the selected restriction enzyme. The o/eC-a/eE fragment and a fragment were obtained from the or/e gene on pEX301A, and then the two DNA fragments were separately inserted into the vector pHY300PLK to obtain the vector pEX500A and the vector pEX600A, wherein the vector pEX500A was compared to pEX600A. An α/eC fragment is added downstream of the α/eE fragment (refer to the master's thesis written by Li Yaocheng from the National Institute of Biochemistry, Yangming University, 1994, entitled “Experimental Elastase Research on the Analytic YaB (1) Enzyme matrix-specific protein engineering (Π) in the gene expression of 仰如仏 DB104”, directed professor Professor Cai Yingjie. The function of the fl/eC fragment is unknown, and may have a transcription termination site (transcrip) Tion 20 terminatin site) ° Amplify the sequence containing the α/eE promoter-SD sequence by PCR and using the vector PEX600A as a temperte (aleE promoter-SD sequence-signal peptide coding sequence) a DNA sequence in which the primer set used to amplify the DNA sequence is modified as disclosed in the specification of the specification of the patent application No. 095,118, 228, filed on Jan. 1, 1998, and the PCR operating conditions are shown in Table 3. And wherein in the design of the PCR primer set, 'a five-cleavage site CEcoAI cutting site is added upstream of the MeE promoter, and a multiple selection site is added downstream of the message peptide coding sequence (multiple) Cloning site, MCS), which contains 5 restriction enzyme cleavage sites for selection: 5 tears 1«-5>7/21-5^1-melon?1-printed eI (5'-3 '), where &ci overlaps with the cleavage site of the 〇i. Table 3 The nucleotide sequence of the primer name (5'·3·) The forward primer pRP-£coi?I £coRI 5'-tagactgaMl£gtatatttcccaatagctaaaaaggtttcc -3丨 (Serial Identification Number: 41) Reverse Primer pRP-MCS Spel Sad Sphl BamHl 5*-taaatcactaet|ctceaektca2catect2eatccctc22ctPcttptpr,patr-V ^ year 5ii Identification Xhol Identification Number: 42) PCR conditions: 2 minutes at 94 ° C, 1 cycle (CyCle); 30 seconds at 94 ° C, 1 at 56 ° C minutes and 30 seconds, 1 minute, 35 cycles at 72 ° C; and at 72 ° C 7 min 1 cycle "PCR product taeacteaattcetatatttcr.rafltapctaaaaapgmr.rraatarraAiingagttQ ^^ flii ^ gi ^ attttagattaccagctgcgcaggttggaacattttgaggaggtataaccatatgaataagaaaatgg ggaaaattgttgccggaacagcactaattatatcagtagcatttagttcatcgatcecacaaecagc cgag ££ M ^ aacatpcteadctceap | Actaetgattta i 辨识 辨识 辨识 辨识 注 Note: The restriction enzyme cleavage site located in the primer is indicated by the bottom line or the framed frame, where the ^^ and ΧΑοΙ cleavage sites overlap. 10 The PCR product obtained above (sequence identification) ID: 43) encodes a message peptide derived from the basophilic Bacillus subtilis YaB alkaline elastase at its nts 123-203, and an SD sequence at its nts 108-113. The restriction enzyme cMIASpel was used to excise the α/eE gene in the vector pEX500A, and the resulting cleavage product was ligated with the 15 amplification product obtained above. Thereafter, the formed ligated product was transformed to be cultured to contain 20 pg/mL ampicillin
(ampicillin, Ap)的LB培養基(LB broth)内的大腸桿菌 DH10B 53 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 (五_ DH10B,可得自於Gibco-BRL,Rockville,MD)内, 繼而於含有20 pg/mL胺苄青黴素(ampicillin, Ap)的LB進行 培育。 隨機挑選出轉形株(transformant)並予以抽取質體載體 5 (plasmid vector)。一個經過限制酶切割(restriction enzyme cleavage)確認以及DNA定序後所獲得的序列正確的質體載 體被命名為pRP,它帶有一個DNA序列包含有核苷酸序列 是大致上對應於那個為上述擴增產物所具有者,並且於該 DNA序列的下游處有一個功能未明而可能具有一轉錄終止 10 位址的α/eC片段。保留該α/eC片段可方便以下的重組DNA 技術操作。 依據我們較早的研究,該質體載體pRP可以在至少下列 的宿主細胞内引發一異源性蛋白的分泌(secretion of a heterologous protein):枯草桿菌,包含嗜 15 驗性枯草桿菌YaB (alkalophilic YaB)在内;以及副 乾酷·乳酸菌paraciwez·)[可購自於食品工業發 展研究所(Food Industry Research and Development,FIRDI) 的生物資源保存及研究中心(Bioresource collection and research center,BCRC),新竹食品路331 號]。E. coli DH10B 53 1321567 in LB medium (LB broth) of (ampicillin, Ap) Amendment date of patent application No. 095118228 Revision date: October 1st, 1998 (five DH10B, available from Gibco-BRL, Within Rockville, MD), it was then incubated with LB containing 20 pg/mL ampicillin (apicillin, Ap). A transformant was randomly selected and a plasmid vector 5 was extracted. A plastid vector confirmed by restriction enzyme cleavage and sequence obtained after DNA sequencing is named pRP, which carries a DNA sequence containing a nucleotide sequence which corresponds substantially to the above The amplification product is of the kind, and there is an α/eC fragment downstream of the DNA sequence that has an unclear function and may have a transcription termination 10 site. Retention of the α/eC fragment facilitates the following recombinant DNA technology manipulations. According to our earlier studies, the plastid vector pRP can elicit a secretion of a heterologous protein in at least the following host cells: Bacillus subtilis, including the bacillus subtilis YaB (alkalophilic YaB) ); and the bio-source collection and research center (BCRC), Hsinchu, which is available from the Food Industry Research and Development (FIRDI). Food Road No. 331].
20 Π·編碼本發明的抗凍蛋白類似物1的DNA序列(亦即AFP I基因)的合成: 申請人以寒冬比目魚第I型抗凍蛋白HPLC6的結構功 能特性相關研究作為基礎,而於蛋白質層級上設計出本發 明的抗凍蛋白類似物。 54 1321567 • 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 HPLC6主要是由3個具有1丨個胺基酸殘基並以通式 “Thr-X^Asx-X7”來表示的重複單元所構成。參見圖卜申請 人將本發明的抗凍蛋白類似物1與1,的胺基酸序列設計為 具有4個重複單元,並於該抗凍蛋白類似物丨與1,的c端處設 5 有6個組胺酸以利於蛋白質純化(pr〇tein purification)的進 行。另外’有一個天冬胺酸-脯胺酸序列被設計位在本發明 的抗凍蛋白類似物I的胺基酸序列的N端處。於是,若以融 合蛋白質(fusion protein)的形式來表現本發明的抗凍蛋白 類似物時,即可利用曱酸(formic acid)來切除位在該抗束蛋 10 白類似物Γ的N端之前的融合夥伴(fusion partner)。 接著’可依據該抗凍蛋白類似物1與Γ被設計出的胺基 酸序列,使用枯草桿菌的偏好密碼子來推衍出它們的核酸 編碼序列’然後根據所推衍出的核酸編碼序列來設計並合 成供OEPCR用的引子,繼而以該等引子來進行oepcr,而 15 得到一包含有編碼抗凍蛋白類似物1與1,的核苦酸序列的 擴增產物》 編碼本發明的抗凍蛋白類似物1與Γ的DNA片段是使 用前述表2中所示的引子來進行如圖2中所示的〇£1>(:11而被 合成出’其中使用DNA聚合酶來進行ίχΝΤΑ的擴增。 20 〇EPCR的反應條件如下面表4中所示》 55 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 表4.用於合成AFP I基因的OEPCR操作條件20 Π·Synthesis of the DNA sequence encoding the antifreeze protein analog 1 of the present invention (that is, the AFP I gene): Applicants based on the structural and functional properties of the cold winter flounder type I antifreeze protein HPLC6, and the protein The antifreeze protein analogs of the invention are designed hierarchically. 54 1321567 • Revision No. 095118228 Patent Revision Revision Date: October 1st, 1998 曰 HPLC6 is mainly composed of 3 residues with 1 amino acid and with the formula “Thr-X^Asx-X7” Represented by the repeating unit. Referring to the applicant, the amino acid sequence of the antifreeze protein analogs 1 and 1 of the present invention is designed to have 4 repeating units, and 5 is provided at the c-terminus of the antifreeze protein analog 丨 and 1, Six histidine acids facilitate the purification of pr〇tein purification. Further, an aspartic acid-proline sequence was designed to be located at the N-terminus of the amino acid sequence of the antifreeze protein analog I of the present invention. Thus, if the antifreeze protein analog of the present invention is expressed in the form of a fusion protein, formic acid can be used to excise the N-terminus of the anti-bundle egg 10 white analog Γ. Fusion partner. Then, based on the amino acid sequence designed by the antifreeze protein analog 1 and hydrazine, the preferred codons of Bacillus subtilis can be used to derive their nucleic acid coding sequence' and then according to the derived nucleic acid coding sequence. Design and synthesize primers for OEPCR, and then use these primers to perform oepcr, and 15 to obtain an amplification product containing a nucleotide sequence encoding antifreeze protein analogs 1 and 1, encoding the antifreeze of the present invention. The DNA fragment of the protein analog 1 and hydrazine was subjected to the use of the primer shown in the above Table 2 to carry out the amplification as shown in Fig. 2 (: 11 and was synthesized) 20 〇 EPCR reaction conditions are as shown in Table 4 below. 55 1321567 No. 095118228 Patent Application Specification Revision Date: October 10, 1998 Table 4. OEPCR Operating Conditions for Synthesis of AFP I Gene
内容物 體積&L) 最終反應濃度 水 36.6 一一一 DNTPs (各為2.5 mM) 4 200 μΜ 10X反應緩衝液 5 IX AFP-5a/«HI 或 AFP-^j/jI 引子 (50 pmole^L) 1 1 μΜ AFP-SS引子 (50 pmole^L) 1 1 μΜ AFP1引子 (10.66 ng/pL) 1 10.66 ng AFP2引子 (10.35 ng/pL) 1 10.35 ng P/m DNA聚合酶 0.4 1.2 U 反應條件:94°C下1分鐘,1個循環;94°C下30秒、70°C下30秒、72 °(:下2分鐘’ 35個循環;以及72°C下5分鐘,1個循環。 用於PCR的反應混合物為50 μΐ的反應緩衝液[20 mM Tris-HCl, 10 mM KC1, 10 mM (NH4)2S04, 2 mM MgS04j 0.1% Triton® X-l00,o.l mg/mL不含核酸酶的牛血清白蛋 5 白(nuclease-free Bovine serum albumin)],裡面含有各為 200 μΜ 的 d ATP、dTTP、dGTP 與(1(:ΤΡ,1μΜ 擴增引子 AFP-5 ⑽ HI (或 AFP-SpAI),1 μΜ擴增引子 AFP-SS,10.66 ng AFP1 引子, 10.35 ng AFP2 引子以及 1.2 UP/m DNA 聚合酶。 反應完成之後,所得到的PCR產物依序以酚/氯仿/異戊 10 醇(phenol/chloroform/isoamylalcohol,v/v/v = 25:24:1)以及 氣仿/異戊醇(chloroform/isoamylalcohol,v/v = 24:1)萃取一 次。之後,取含有DNA的溶液,予以加入2倍體積的無水酒 精以及0.1倍體積的3 Μ醋酸鈉(pH 5.2)並靜置於-70°C下歷 時1小時以使DNA沉澱。經70%酒精洗滌去鹽[desalt]與真空 15 蒸發(vacuum evaporation)後,將DNA回溶於適量的滅菌去 離子水(sterile deionized water)内,並貯存於-20°C下備用。 56 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 以電泳法(electrophoresis)來觀察PCR產物的純度與濃 度。電泳的操作程序如下:首先,製作一個2%瓊脂糖凝膠 (agarose gel)。以5: 1的比例將DNA樣品與6X裝載緩衝液(6X loading buffer)混合均勻,然後予以施加至該2%瓊脂糖凝膠 5的樣品凹槽(sample well)中。於1〇〇 v下進行電泳歷時30分 鐘。電泳元畢後,以〉臭化乙旋(ethidiumbromide,EtBr)來染 色凝膠’並於紫外光燈下觀察結果。DNA的濃度是藉由使 用柯達D C26 5變焦數位相機搭配專用紫外光源濾鏡來進行 凝膠照相’並利用分析軟體Gel-Pro Analyzer™ version 3.0 1〇 來分析DNA濃度。 圖4顯示兩個PCR產物的瓊脂糖凝膠電泳結果,其中徑 1 是一使用引子 AFP-5^/、AFP-SS、AFP 1 與AFP2 來進行OEPCR 所得到的擴增產物(amplicon)(序列辨識編號:28),而徑2是一使用 引子AFP-5i而HI、AFP-SS、AFP1與AFP2來進行OEPCR所得到的 15 擴增產物(序列辨識編號:27)。 徑1的P C R產物可被併入至一限制酶办ZzIASpd予以切開 的質體PEX500A之内’而得到一衍生質體pAFP帶有一個會 表現一鹼性彈性蛋白酶(部分)-AFP融合蛋白質的核酸編碼 片段(數據未示出)。 20 E.質體載體pRP-AFP的構築: 圖5顯示重組型載體PRP-AFP的構建流程,其中在上述 操作程序Π中利用引子AFP-5<awHI、AFP-SS、AFP1與AFP2來 進行0EPCR而得到的擴增產物(序列辨識編號:27)被使用於本實 驗中以作為AFPI基因。 57 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 首先’將儲存於_2〇°C下的擴增產物回溫,然後取出適 量來進行 Ba/nHIASpel 限制酶切割(restriction enzyme cleavage)。另外,以限制酶5awHI/印eI來切割上述操作程 序I中所得到的質體載體pRP並回收切割產物。就所得到的 5 兩種切割產物,將載體DNA與插入物DNA (insert DNA)以 一為1 . 1 〇的莫耳比(molar ratio)來進行接合(ligation)。 之後’利用電轉形法(electrotransformation)將由此所得 到的接合產物(ligation product)送入至大腸桿菌菌株 DH10B的細胞内。隨機挑選出轉形株(transformants)並予以 10 抽取質體載體。 一個經過限制酶切割(restriction enzyme cleavage)確認 以及DNA定序後所獲得的序列正確的質體載體被命名為 pRP-AFP ’它可在枯草桿菌⑽如//·?)[包含嗜驗性枯 草桿菌YaB (alkalophilic YaB)在内]以及副乾路乳 15 酸菌的細胞内展現AFP I基因的表 現(數據未示出),並被用作為構築下面實施例2至4中所述的 大腸桿菌表現載體内所帶有的抗凍蛋白基因的來源。 實施例2.質體載體pQE30-AFP的構築以及它在大腸桿菌菌 株M15(pREP4)内的表現 20 I ·質體載體pQE30-AFP的構築: 圖6顯示質體載體pQE30-AFP的構築流程。 質體載體pQE-30 (購自於Qiagen)是一種T5表現載體 (T5 expression vector),它的特色為: (1)帶有一個T5啟動子(pT5),而能為大腸桿菌的RNA聚 58 1321567 . 第095118228號專利申請案說明書修正頁 修正日#月:98年10月1曰 合酶所辨識; (2) 含有2個/ac操縱子(/ac 〇perat〇r,/ac〇),而能對一標的 基因(target gene)的轉錄做嚴格的調控。而存在於另一 個載體pREP4上的/ac抑制蛋白質基因repressor 5 geneW)能表現大量乳糖抑制蛋白質(lactose repressor),而對該標的基因的表現能作反式壓抑 (ira/w-repression);以及 (3) 利用此載體而被表現出的蛋白質產物在n端處會帶有 一為MRGSHHHHHH (序列辨識編號:44)的胺基酸序 10 列,而會存在於轉形宿主細胞的細胞質中,而使得該 蛋白質產物可利用使用Ni-NTA樹脂的親和性管柱層 析來進行純化。 以限制酶5amHIASa/I來切割質體載體pQE-30,並回收 切割產物。另外,使用限制酶來切割實施例1所 15 得到的重組型載體pRP-AFP,而得到一個包含有AFP-a/eC 的DNA片段’並回收該DNA片段。就所得到的兩種切割產 物,將載體DNA與插入物DNA以一為1 : 5的莫耳比來進行 接合。之後,利用電轉形法(electrotransformation)將由此所 得到的接合產物送入至大腸桿菌菌株DH10B的細胞内。隨 20 機祧選轉形株並予以抽取質體載體。 一個經過限制酶切割(restriction enzyme cleavage)確認 以及DNA定序後所獲得的序列正確的質體載體被命名為 PQE30-AFP,它帶有一個DNA片段編碼一重組型抗凍蛋白 類似物於N端處帶有一為MRGSHHHHHH的胺基酸序列(序 59 1^21567 第095118228號專利申請案說明書修正頁 修正日期:98年10月!曰 列辨識編號:44)。 Π·以大腸桿菌轉形株M15(pREP4, PQE30-AFP)來生成重 組型抗凍蛋白類似物: 將所知到的質體載體PQE30-AFP分別轉形至大腸桿菌 5菌株M15(pREP4)[質體PREP4上帶有一個壓抑子 (repressor)可以嚴謹調控大腸桿菌的表現]與大腸桿菌菌株 Ml5 (這兩個大腸桿菌菌株是購自於Qiagen)内,而得到轉形 株 M15(pREP4,pQE30-AFP)(實驗組)與 M15(pQE30-AFP) (對照組)。之後,以1 mMIPTG來處理所得到的轉形株,俾 10 以誘導重組型抗凍蛋白類似物的生產。 在以IPTG誘導轉形株Ml5(pREP4, pQE30-AFP)歷時4 個小時之後,所得到的重組型抗凍蛋白類似物數量最多, 主要是存在於宿主細胞的可溶部分(soluble fraction)。在6 小時的IPTG誘導之後,所得到的重組型抗凍蛋白類似物數 15 量降低,這有可能是因為被表現出的重組型抗凍蛋白類似 物是呈胜肽的形式,而易被宿主細胞内的蛋白酶或胜肽酶 予以分解》此外,被表現的重組型抗凍蛋白類似物的數量 減少亦有可能是導因於IPTG的消耗造成誘導劑劑量不足 (數據未示出)。 20 實施例3.質體載體pET-12a-AsAFP的構築以及它在大腸桿 菌菌株BL21(DE3)内的表現 I.質體載體pET-12a-AsAFP的構築: 圖7顯示質體載體pET-12a-AsAFP的構築流程。 質體載體pET-12a (購自於Novagen)的大小約為4.7 60 1321567 修正日期:98年10月1曰 第095118228號專利申請案說明書修正頁 kb,它是一種T7表現載體,並帶有胺苄青黴素抗性基因 (ampicilin resistance gene,Apr)以及訊息胜肽編碼序 列。可以利用此質體載體來大量表現被置放位在Τ7啟動子 的下游處的標的基因。 5 為方便質體的操作,先以限制酶5amHI來切割質體載 體pET-12a,而後進行補齊(Fill_in)與接合(ligati〇n),以使質 體載體pET-12a上的BamHI位址消失β所形成的接合產物接 而以限制酶來切割,並回收切割產物。另外,使 用限制酶5⑽HIAWI來切割實施例丨所得到的重組型載體 10 PRP_AFP ’而得到一個包含有AFP-a/eC的DNA片段,並回 收該DNA片段。就所得到的兩種切割產物,將載體dNA與 插入物DNA以一為1 : 5的莫耳比來進行接合β之後,利用 電轉形法將由此所得到的接合產物送入至大腸桿菌菌株 DH10B的細胞内。隨機挑選轉形株並予以抽取質體載體。 15 一個經過限制酶切割確認以及DN Α定序後所獲得的序 列正確的T7質體載體被命名為pET-La-AsAFP,它能於0.4 mM IPTG的誘導下利用該T7啟動子來啟動位於下游處的 AFP基因的表現’而被表現出的重組型抗凍蛋白類似物在N 端處帶有一個源自於嗜驗性枯草桿菌YaB (alkalophilic 2〇 YaB)的鹼性彈性蛋白酶的訊息胜肽。 Π .以大腸桿菌轉形株BL21 (DE3)(pET-12a-AsAFP)來生成 重組型抗凍蛋白類似物: 將所得到的質體載體pET-12a-AsAFP轉形至適用於T7 表現系統的大腸桿菌菌株BL21(DE3)(購自於Novagen)内, 61 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年1〇月1曰 而得到轉形株 BL21(DE3)(pET-12a-AsAFP)。在以 〇·4 mM IPTG誘導所得到的轉形株歷時2小時之後,有重組塑抗凍蛋 白類似物開始被生產出來。而經由細胞劃分分析(cell fractionation analysis)發現到,被表現出的重組型抗凍蛋白 5 類似物主要是被分泌至胞壁空間(periplasmic space)或細胞 外(extracellular)。這顯示大腸桿菌宿主細胞内的與分泌有 關的蛋白質可以辨識該重組型抗凍蛋白類似物所帶有的鹼 性彈性蛋白酶的訊息胜肽,進而將該重組型抗凍蛋白類似 物帶往至細胞膜上’並經由胞膜上的轉位機組(transl〇cati〇n 10 machinery)而將該重組型抗凍蛋白類似物運送至胞壁空間。 實施例4.質體載體PET-12a-OsAFP的構築以及它在大腸桿 菌菌株BL21(DE3)内的表現 I.質體載體pET-12a-OsAFP的構築: 圖8顯示質體載體PET-12a-OsAFP的構建流程。 15 以限制酶來切割質體載體 pET-12a-AsAFP,而得到一個包含有AFP-a/eC的DNA片 段,並回收該DNA片段。另外,使用限制酶B⑽HIAEC0RI 來切割質體載體pET- 12a’並回收切割產物。就所得到的兩 種切割產物,將載體DNA與插入物DNA以一為丨:5的莫耳 20 比來進行接合。之後,利用電轉形法將由此所得到的接合 產物送入至大腸桿菌菌株DH10B的細胞内。隨機挑選轉形 株並予以抽取質體載體。 一個經過限制酶切割確認以及DN A定序後所獲得的序 列正確的T7質體載體被命名為pET-12a-OsAFP,它帶有— 62 1321567 . 第095118228號專利申請案說明書修正頁 修正曰期:98年丨0月1日 個DNA片段編碼一重組型抗康蛋白類似物於N端處帶有一 訊息胜肽。 Π .以大腸桿菌轉形株BL21(DE3)(pET-12a-〇sAFP)來生成 重組型抗凍蛋白類似物: 5 將所得到的質體載體pET-12a-OsAFP轉形至大腸桿菌 菌株BL21(DE3)内’而得到轉形株BL21(DE3)(pET12a_Content volume &L) Final reaction concentration water 36.6 One-to-one DNTPs (2.5 mM each) 4 200 μΜ 10X Reaction Buffer 5 IX AFP-5a/«HI or AFP-^j/jI Introduction (50 pmole^L 1 1 μΜ AFP-SS primer (50 pmole^L) 1 1 μΜ AFP1 primer (10.66 ng/pL) 1 10.66 ng AFP2 primer (10.35 ng/pL) 1 10.35 ng P/m DNA polymerase 0.4 1.2 U Reaction conditions 1 minute at 94 ° C, 1 cycle; 30 seconds at 94 ° C, 30 seconds at 70 ° C, 72 ° (: 35 cycles at 2 minutes; and 5 minutes at 72 ° C, 1 cycle). The reaction mixture used for PCR was 50 μL of reaction buffer [20 mM Tris-HCl, 10 mM KC1, 10 mM (NH4) 2S04, 2 mM MgS04j 0.1% Triton® X-l00, ol mg/mL nuclease-free The nuclease-free Bovine serum albumin contains 200 μM of d ATP, dTTP, dGTP and (1(:ΤΡ, 1μΜ amplification primer AFP-5 (10) HI (or AFP- SpAI), 1 μΜ amplification primer AFP-SS, 10.66 ng AFP1 primer, 10.35 ng AFP2 primer and 1.2 UP/m DNA polymerase. After the reaction is completed, the obtained PCR product is sequentially phenol/chloroform/isoamyl alcohol (phenol/chl Oroform/isoamylalcohol, v/v/v = 25:24:1) and extract once with chloroform/isoamylalcohol (v/v = 24:1). After that, take the solution containing DNA and add 2 A volume of absolute alcohol and 0.1 volume of sodium citrate (pH 5.2) were placed at -70 ° C for 1 hour to precipitate the DNA. Washed with 70% alcohol to remove salt [desalt] and vacuum 15 evaporation ( After vacuum evaporation, the DNA is dissolved back into an appropriate amount of sterile deionized water and stored at -20 ° C for use. 56 1321567 Patent Application No. 095118228 Revision of the amended page: 98 years On October 1st, the purity and concentration of the PCR product were observed by electrophoresis. The procedure for electrophoresis was as follows: First, a 2% agarose gel was prepared. The DNA sample was mixed uniformly with 6X loading buffer in a ratio of 5:1 and then applied to the sample well of the 2% agarose gel 5. Electrophoresis was carried out at 1 〇〇 v for 30 minutes. After the electrophoresis element was completed, the gel was dyed with ethidium bromide (EtBr) and observed under an ultraviolet lamp. The DNA concentration was determined by using a Kodak D C26 5 zoom digital camera with a dedicated UV light source filter for gel photography and using the analysis software Gel-Pro AnalyzerTM version 3.0 1〇 to analyze the DNA concentration. Figure 4 shows the results of agarose gel electrophoresis of two PCR products, wherein the diameter 1 is an amplification product (amplicon) obtained by OEPCR using the primers AFP-5^/, AFP-SS, AFP 1 and AFP2. Identification number: 28), and diameter 2 is a 15 amplification product (SEQ ID NO: 27) obtained by OEPCR using primers AFP-5i and HI, AFP-SS, AFP1 and AFP2. The PCR product of diaphoresis 1 can be incorporated into a plastid PEX500A which is cleaved by ZzIASpd to obtain a derivative plastid pAFP with a nucleic acid which expresses a basic elastase (partial)-AFP fusion protein. Encoded fragments (data not shown). 20 E. Construction of plastid vector pRP-AFP: Figure 5 shows the construction of recombinant vector PRP-AFP, in which the primers AFP-5 <awHI, AFP-SS, AFP1 and AFP2 were used for OEPCR in the above procedure. The resulting amplification product (SEQ ID NO: 27) was used in this experiment as the AFPI gene. 57 1321567 Patent No. 095118228 Revision of Amendment Page of the Patent Application: October 1st, 1998 First, 'restore the amplified product stored at _2〇 °C, then take out the appropriate amount for Ba/nHIASpel restriction enzyme cleavage (restriction enzyme cleavage). Further, the plastid vector pRP obtained in the above Procedure I was cleaved with the restriction enzyme 5awHI/printed eI and the cleavage product was recovered. With respect to the obtained two cleavage products, the vector DNA and the insert DNA were ligated at a molar ratio of 1.1 Å. Thereafter, the thus obtained ligation product was fed into the cells of Escherichia coli strain DH10B by electrotransformation. Transformants were randomly selected and 10 plasmids were extracted. A plastid vector confirmed by restriction enzyme cleavage and sequence obtained after DNA sequencing was named pRP-AFP 'it can be used in Bacillus subtilis (10) such as ///?) The expression of the AFP I gene was revealed in the cells of the bacillus Yab (alkalophilic YaB) and the sub-drug lactobacillus (data not shown), and was used to construct the Escherichia coli described in Examples 2 to 4 below. The source of the antifreeze protein gene carried in the expression vector. Example 2. Construction of plastid vector pQE30-AFP and its expression in Escherichia coli strain M15 (pREP4) 20 I Construction of plastid vector pQE30-AFP: Fig. 6 shows the construction procedure of plastid vector pQE30-AFP. The plastid vector pQE-30 (purchased from Qiagen) is a T5 expression vector featuring: (1) a T5 promoter (pT5), and an RNA capable of E. coli 58 1321567 . Patent No. 095118228 Revision of Amendment Page of the Patent Application No. #月: October 1st, 1998 1 identified by the enzyme; (2) Contains 2 /ac operons (/ac 〇perat〇r, /ac〇), It can strictly regulate the transcription of a target gene. The /ac inhibitory protein gene repressor 5 geneW) present on another vector pREP4 can express a large amount of lactose repressor, and the expression of the target gene can be inversely suppressed (ira/w-repression); (3) The protein product expressed by this vector will carry an amino acid sequence of MRGSHHHHHH (SEQ ID NO: 44) at the n-terminus, which will be present in the cytoplasm of the transgenic host cell, and This protein product can be purified by affinity column chromatography using a Ni-NTA resin. The plastid vector pQE-30 was cleaved with the restriction enzyme 5amHIASa/I, and the cleavage product was recovered. Further, the recombinant vector pRP-AFP obtained in Example 1 was cleaved using a restriction enzyme to obtain a DNA fragment containing AFP-a/eC' and the DNA fragment was recovered. For the two cleavage products obtained, the vector DNA and the insert DNA were ligated at a molar ratio of 1:5. Thereafter, the thus obtained ligation product was fed into cells of Escherichia coli strain DH10B by electrotransformation. The transgenic plants were selected with 20 machines and the plastid carriers were extracted. A plastid vector confirmed by restriction enzyme cleavage and sequenced after DNA sequencing was named PQE30-AFP, which carries a DNA fragment encoding a recombinant antifreeze protein analog at the N-terminus. There is an amino acid sequence of MRSSHHHHHH (Procedure 59 1^21567 No. 095118228 Patent Application Revision Revision Date: October 1998! 辨识列号: 44). Π·Recombinant antifreeze protein analog was produced by E. coli transform strain M15 (pREP4, PQE30-AFP): The known plastid vector PQE30-AFP was transformed into Escherichia coli 5 strain M15 (pREP4) [ The plastid PREP4 has a repressor that can strictly regulate the expression of E. coli] and E. coli strain Ml5 (the two E. coli strains are purchased from Qiagen), and the transformed strain M15 (pREP4, pQE30) is obtained. -AFP) (experimental group) and M15 (pQE30-AFP) (control group). Thereafter, the obtained transformant strain was treated with 1 mM IPTG to induce production of a recombinant antifreeze protein analog. After 4 hours of induction of the transformant strain Ml5 (pREP4, pQE30-AFP) by IPTG, the obtained recombinant antifreeze protein analog was the most abundant, mainly in the soluble fraction of the host cell. After 6 hours of IPTG induction, the number of recombinant antifreeze protein analogs obtained was decreased by 15 , which may be because the recombinant antifreeze protein analogs expressed were in the form of peptides and were easily hosted. Intracellular protease or peptide peptidase is decomposed. In addition, the reduced amount of recombinant antifreeze protein analogs expressed may also be due to insufficient dose of inducer due to consumption of IPTG (data not shown). 20 Example 3. Construction of plastid vector pET-12a-AsAFP and its expression in Escherichia coli strain BL21(DE3) I. Construction of plastid vector pET-12a-AsAFP: Figure 7 shows plastid vector pET-12a -AsAFP construction process. The plastid vector pET-12a (purchased from Novagen) has a size of approximately 4.7 60 1321567. Date of revision: October 2014, pp. 095118228, patent application specification page kb, which is a T7 expression vector with an amine The ampicillin resistance gene (Apr) and the message peptide coding sequence. This plastid vector can be utilized to express a large number of target genes placed downstream of the Τ7 promoter. 5 To facilitate the manipulation of the plastid, the plastid vector pET-12a was first cleaved with the restriction enzyme 5amHI, and then Fill_in and ligati〇n were added to make the BamHI site on the plastid vector pET-12a. The ligated product formed by the disappearance of β is then cleaved with a restriction enzyme, and the cleavage product is recovered. Further, the recombinant vector 10 PRP_AFP ' obtained in Example 切割 was cleaved using restriction enzyme 5 (10) HIAWI to obtain a DNA fragment containing AFP-a/eC, and the DNA fragment was recovered. With respect to the obtained two cleavage products, the carrier dNA and the insert DNA were ligated with a molar ratio of 1:5, and the thus obtained ligated product was fed to Escherichia coli strain DH10B by electroporation. Within the cell. The transgenic plants were randomly selected and the plastid vector was extracted. 15 A sequence-corrected T7 plastid vector obtained after restriction enzyme cleavage confirmation and DN Α sequencing was named pET-La-AsAFP, which was able to initiate downstream of the T7 promoter under the induction of 0.4 mM IPTG. The expression of the AFP gene is represented by a recombinant antifreeze protein analog with a message peptide derived from the basic elastase of the albileophilic 2〇YaB at the N-terminus. . Π. Recombinant antifreeze protein analog was generated by E. coli transform strain BL21 (DE3) (pET-12a-AsAFP): The obtained plasmid vector pET-12a-AsAFP was transformed into a T7 expression system. Escherichia coli strain BL21 (DE3) (purchased from Novagen), 61 1321567 No. 095118228 patent application revised page revised period: 98 years 1 month 1曰 and obtained transformed strain BL21 (DE3) (pET-12a -AsAFP). After 2 hours from the obtained transgenic strain induced by 〇4 mM IPTG, a recombinant plastic antifreeze protein analog was started to be produced. By cell fractionation analysis, it was found that the expressed recombinant antifreeze protein 5 analog was mainly secreted into the periplasmic space or extracellular. This shows that the secretion-associated protein in the E. coli host cell recognizes the message peptide of the alkaline elastase carried by the recombinant antifreeze protein analog, and the recombinant antifreeze protein analog is carried to the cell membrane. The recombinant antifreeze protein analog is delivered to the cell wall space via the translocation unit (transl〇cati〇n 10 machinery). Example 4. Construction of the plasmid vector PET-12a-OsAFP and its expression in E. coli strain BL21 (DE3) I. Construction of the plastid vector pET-12a-OsAFP: Figure 8 shows the plastid carrier PET-12a- OsAFP build process. 15 The plastid vector pET-12a-AsAFP was cleaved with a restriction enzyme to obtain a DNA fragment containing AFP-a/eC, and the DNA fragment was recovered. Further, the plastid vector pET-12a' was cleaved using restriction enzyme B (10) HIAEC0RI and the cleavage product was recovered. For the two cleavage products obtained, the vector DNA was ligated with the insert DNA at a molar ratio of 丨:5. Thereafter, the thus obtained conjugated product was fed into cells of Escherichia coli strain DH10B by electroporation. The transgenic plants were randomly selected and the plastid vector was extracted. A T7 plastid vector with the correct sequence obtained after restriction enzyme cleavage confirmation and DN A sequencing was named pET-12a-OsAFP with - 62 1321567. The revised page of the patent application No. 095118228 was amended. : In 1998, a DNA fragment encoding a recombinant anti-Kang protein analog with a message peptide at the N-terminus. Π. Recombinant antifreeze protein analog was generated by E. coli transform strain BL21(DE3)(pET-12a-〇sAFP): 5 The obtained plasmid vector pET-12a-OsAFP was transformed into Escherichia coli strain BL21 (DE3) in the 'and get the transformed strain BL21 (DE3) (pET12a_
OsAFP)。在以0.4 mM IPTG誘導所得到的轉形株歷時2小時 之後,有重組型抗凍蛋白類似物開始被生產出來。而經由 細胞劃分分析發現到,被表現出的重組型抗凍蛋白類似物 10主要疋存在於細胞内不可溶部分(intracellular insoluble fraction)内。 經由穿透式電子顯微鏡分析,可見到在大腸桿菌轉形 株的細胞内有包涵體(inclusion body)的形成。雖然此實施例 所得到重組型抗凍蛋白類似物的N端帶有〇 mp τ訊息胜肽, 15但卻未能有效地將該重組型抗束蛋白類似物分泌至胞壁空 間。這有可能是因為蛋白質的合成速率過快,而來不及使 被表現出的重組型抗凍蛋白類似物被大腸桿菌宿主細胞内 的與分泌有關的蛋白質所辨識,以致於被表現的重組型抗 凍蛋白類似物在大腸桿菌轉形株細胞内形成不可溶包涵體 20 (insoluble inclusion bodies) ° 實施例5.抗凍蛋白編碼基因在大腸桿菌轉形株内的表現以 及重組型抗凍蛋白類似物的純化 I.抗束蛋白編碼基因在大腸桿菌轉形株内的表現: 對於含有上述實施例2至4所得到的重組型質體載體的 63 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 大腸桿菌轉形株,分別予以挑選出一個單一菌落(c〇l〇ny) 並接種至一含有抗生素的LB液體培養基(LB broth)内來進 行預培養(preculture)過夜。之後’ 1%的隔夜預培養物 (overnight preculture)被接種入至100 mL的含有抗生素的新 5鮮LB液體培養基(總培養體積可視需要來作調整)内,其中 關於pQE表現系統,於培養基内添加25 pg/mL康那黴素OsAFP). After the resulting transgenic strain was induced with 0.4 mM IPTG for 2 hours, a recombinant antifreeze protein analog was started to be produced. By cell division analysis, it was found that the recombinant antifreeze protein analog 10 exhibited was mainly present in the intracellular insoluble fraction. Analysis by transmission electron microscopy revealed the formation of an inclusion body in the cells of the E. coli transformant. Although the N-terminus of the recombinant antifreeze protein analog obtained in this example carries the 〇 mp τ message peptide, 15 but failed to efficiently secrete the recombinant anti-beam protein analog into the cell wall space. This may be because the rate of protein synthesis is too fast, and it is too late to allow the expressed recombinant antifreeze protein analog to be recognized by the secretory-related protein in the E. coli host cell, so that the recombinant antifreeze is expressed. The protein analog forms insoluble inclusion bodies in the cells of the E. coli transforming strain. Example 5. Expression of the antifreeze protein encoding gene in E. coli transformants and recombinant antifreeze protein analogs Purification I. Expression of anti-bundle-encoding gene in E. coli transgenic strain: For the modified page containing the recombinant plastid vector obtained in the above Examples 2 to 4, the amendment page of the patent application No. 095118228 is amended: In October 1998, a strain of E. coli was selected, and a single colony (c〇l〇ny) was selected and inoculated into an antibiotic-containing LB liquid medium (LB broth) for preculture overnight. Then '1% of the overnight preculture was inoculated into 100 mL of fresh 5 fresh LB liquid medium containing antibiotics (the total culture volume can be adjusted as needed), with regard to the pQE performance system, in the medium Add 25 pg/mL connamycin
(kanamycine)與 100 pg/mL胺苄青黴素(ampicillin);關於pET 表現系統,於培養基内添加50 pg/mL胺苄青黴素。由此所 形成的初始培養物(the thus-formed initial culture)在37°C、 10 150 rpm的條件下進行培養過夜。 1%的隔夜培養物被加入至100 mL的含有抗生素的新 鮮LB液體培養基内’在37°C、180 rpm的條件下培養至〇d600 与0.6〜0.8後,予以添加適量的iptg (關於pQE表現系統,於 培養基内添加1 mM IPTG ;關於pET表現系統,於培養基内 15 添加0.4 mM或0.05 mM IPTG)來誘導抗凍蛋白編碼基因的 表現,然後於37°C、180 rpm的條件下繼續培養。 II.重組型抗凍蛋白類似物在大腸桿菌轉形株内的部位偵 測: 參考Novagen handbook的方法,將大腸桿菌轉形株所 20 生成的蛋白質的所在部位區分為胞外部分(extracellular fraction)、胞壁空間部分(peripiasmic space fracti〇n)以及細 胞内可溶部分與不可溶部分(intracellular soluble fracti〇n and insoluble fraction)等四個部分,並以蛋白質電泳法來偵 測被表現的重組型抗束蛋白類似物的所在位置。實驗流程 64 1321567 . 第095118228號專利申請案說明書修正頁 修正日期:98年10月1日 如下: 依照上述操作程序I來培養大腸桿菌轉形株,當培養 至OD600= 0_6〜0.8時,予以加入適量11)丁〇以誘導抗凍蛋白編 碼基因的表現。 5 在1PTG誘導2小時、4小時之後,取出40 mL培養物並 於lOOOOxg與4°C下予以離心歷時1〇分鐘。收取上清液,以 0.22 μιη過濾膜予以過濾並收集濾液,以此作為胞外部分的 蛋白質樣品。 將上述離心之後所得到的沉澱物再散浮於3 0 m L的T S 10 緩衝液中’予以加入60 pL的EDTA,然後於室溫下緩慢攪 拌歷時10分鐘。在l〇〇〇〇Xg與4°c下離心歷時10分鐘,倒除 上清液。將沉澱物再散浮於30 mL的冰冷MgS04溶液(5 mM MgS04, 10% TCA)内,於冰浴下緩慢攪拌歷時10分鐘。在 10000xg與4°C下離心歷時10分鐘,而得到上清液,以此作 15 為胞壁空間部分的蛋白質樣品。 上述離心之後所留下的沉澱物接而以三氯乙酸 (trichloroacetic ccid,TCA)進行沉澱濃縮,並將沉澱物再散 浮於4 mL冰冷Tris-HCl (pH 7.5)内,加入溶菌酶(lysozyme, 購自於Sigma,最終濃度為100 pg/mL)並於30°C下作用歷時 20 15分鐘。之後,以超音波處理(XL Sonicator ultrasonic processor, Misonix Inc.,Farmingdale,NY,USA)來打破菌 體。所形成的產物被取出1.5 mL並予以置入於一個微量離 心管(microtube)内,於10000xg與4°C下予以離心歷時10分 鐘。之後,取出200 μΙ>的上清液,以此作為細胞内可溶部 65 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1日 分的蛋白質樣品,而沉澱物則為細胞内不可溶部分。以2〇 mM Tns-HCl (pH 7.5)清洗沉澱物兩次,俾以避免可能殘留 的可溶性蛋白質來干擾實驗判斷。之後,加入丨5 mL&i% SDS以使不可溶之蛋白質回溶,繼而加熱並激烈混合,直 5至沉澱物被完全地散浮於溶液内,以此作為細胞内不可溶 部分的蛋白質樣品。 將不同菌體部分(bacterial fractions)的蛋白質樣品與 5X樣品緩衝液(Sample buffer)(或2X樣品緩衝液)混合,於 l〇〇°C加熱歷時5分鐘之後’以Tricine_SDs PAGE來進行蛋 10 白質電泳。 有關Tricine-SDS PAGE的操作是參照H. Schagger and G. von Jagow (1987),Anal. Biochem” 166:368-379所述的方 15 20 法並加以修飾。首先,製備一聚丙烯醯胺凝膠片,它分為3 層’分別是聚積凝膠(stacking gel)(4%T、3%〇、間隔凝膠 (spacer gel)(10% T、3% 〇以及分離凝膠(separati〇n gel) (16.5/i T、3/» C) ’然後將蛋白質樣品裝載(i〇a(jing)至樣品 槽(sample well)中,以0.2 M Tris-base (pH 8.9)作為正極緩衝 液並以0.1 M Tris-base (含有o.i μ Tricine,0.1% SDS,pH 8.25)作為負極緩衝液,在80 V的電壓下進行電泳。當追蹤 染料(tracking dye)跑至凝膠片的底部時即停止電泳。凝朦 片接而以一含有0.025%孔瑪西藍R_250 (c〇〇massive blue R-250)的10%乙酸溶液來進行染色歷時丨小時。之後,以1〇0/〇 乙酸溶液來進行褪染。 皿·重組型抗凍蛋白類似物的純化: 66 第095H8228號專利申請案說明書修正頁 修正日期:98年10月i日 以離心處理(l〇〇〇〇xg、4°C,1〇分鐘)來收穫依照上述 操作程序I所培養並經IPTG誘導的轉形株細胞,由此所得 到的上清液部分(即胞外表現的部分)先以〇 22 ^爪過濾膜過 ;慮’收集渡液’再利用超過濾(ultrafiltration)來予以濃縮。 5於所獲得的濃縮液内加入Tris、NaH2P04與尿素至最終濃度 分別為10 mM、100 mM及8 Μ,將所形成的混合物的pH值 調整至8.0,並置於室溫下緩慢授拌歷時丨小時。 另外,將細胞>儿版丸(cell pellete)再懸浮(re-suspend)於 超音波緩衝液(sonication buffer)内,然後以Sonicator 10 (Ultrasonic processor model XL; Heat Systems, Farmingdale, NY)來進行超音波處理以將細胞打破。之後,進行離心 (10000xg ’ 10分鐘)’而得到一可溶部分與一不可溶部分。 將該不可溶部分再懸浮於溶菌緩衝液(lySis buffer)内,而該 可溶部分則予以加入尿素至最終濃度8 M。置於室溫下緩慢 15 攪拌歷時1小時。 蛋白質的純化是依照The QIAexpressionist™ (fourth edition, Qiagen)的方法來進行,其中於變性環境(denaturing environment)下,採用批式方法(in a batch manner)來純化帶 有6個組胺酸(Histidine)的蛋白質。純化流程如下:將4 ml 20 蛋白質樣品與1 mLNi-NTA樹脂混合均勻,並於室溫下進行 迴轉震盪(rotating shaking)歷時2小時。將樹脂及蛋白質樣 品混合物裝填於一管柱中,在室溫下以4 mL清洗緩衝液C1 [wash buffer C1,含有 100 mM NaH2P04, 10mM Tris-Cl,8 Μ 尿素(urea), pH 7.0]沖洗樹脂兩次,再以4 mL清洗緩衝液C2 67 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 (含有 100 mM NaH2P〇4, lOmM Tris-Cl,8 Μ尿素,pH 6.3)沖 洗樹脂兩次,以將無法與樹脂結合的蛋白質沖離。最後, 以 2 mL 洗提缓衝液 D (elution buffer D)(含有 100 mM NaH2P04, 10mM Tris-Cl,8 Μ尿素,pH 5.9)以及2 mL洗提緩 5 衝液E (含有 100 mM NaH2P04, lOmM Tris-Cl,8 M尿素,pH 4.5)將吸附在樹脂上之蛋白質沖提出來。於洗提之時,每0 5 mL的洗出液(eluate)予以收集於一個試管内。 圖9顯示由前述實施例2至4所得到的大腸桿菌轉形株 所生成並經純化的重組型抗凍蛋白類似物的 10 Tricine-SDS-PAGE電泳結果,其中徑M:低分子量蛋白質標 記;徑1 :從大腸桿菌M15(pREP4,pQE30-AFP)的細胞質部 分純化出的蛋白質;徑2 :從大腸桿菌 BL21(DE3)(pET12a-AsAFP)的培養基部分純化出的蛋白 質;徑3 :從大腸桿菌BL2l(DE3)(pET12a-AsAFP)的細胞内 11可溶部分純化出的蛋白質;徑4 :從大腸桿菌 BL21(DE3)(pET12a-AsAFP)的細胞内不可溶部分純化出的 蛋白質;徑5 :從大腸桿菌BL21(DE3)(pET12a_〇SAFP)的細 胞内可溶部分純化出的蛋白質;以及徑6 :從大腸桿菌 BL21(DE3)(pET12a-OsAFP)的細胞内不可溶部分純化出的 20 蛋白質。 根據實驗結果,由實施例2-3所得到的大腸桿菌轉形株 所生產的重組型抗凍蛋白類似物在宿主細胞内的坐落處, 大致上可歸納如下: 1.大腸桿菌M15(pREP4,pQE30-AFP)所生成的重組 68 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年丨〇月1曰 型抗凍蛋白類似物主要是存在於細胞内可溶部 分,具一分子量約為6.48 kDa ; 2.大腸桿菌 BL21(DE3,pET-12a-AsAFP)所生成的 rAFP主要是存在於胞外(上清液)部分,而細胞内可 溶與不可溶部分亦可純化到蛋白質。從細胞内不可 溶部分被純化出的重組型抗凍蛋白類似物分子量 較大(約為8.14),推測它帶有一個訊息胜肽(徑4)。 從細胞外以及細胞内可溶部分被純化出的重組逛 10(kanamycine) with 100 pg/mL ampicillin (ampicillin); for the pET expression system, 50 pg/mL ampicillin was added to the medium. The thus-formed initial culture thus formed was cultured overnight at 37 ° C, 10 150 rpm. 1% of the overnight culture was added to 100 mL of fresh LB liquid medium containing antibiotics. After incubation at 37 ° C, 180 rpm to 〇d600 and 0.6~0.8, add appropriate amount of iptg (for pQE performance) In the system, 1 mM IPTG was added to the medium; for the pET expression system, 0.4 mM or 0.05 mM IPTG was added to the medium to induce the expression of the antifreeze protein-encoding gene, and then the culture was continued at 37 ° C and 180 rpm. . II. Detection of Recombinant Antifreeze Protein Analogs in E. coli Transgenic Plants: Refer to the Novagen handbook method to distinguish the site of the protein produced by E. coli transformant 20 into an extracellular fraction. Four parts of the cell wall space (peripiasmic space fracti〇n) and intracellular soluble fracti〇n and insoluble fraction, and protein electrophoresis to detect the expressed recombinant form The location of the anti-beam protein analog. Experimental procedure 64 1321567. Revision No. 095118228 Patent Application Revision Date: October 1, 1998 as follows: According to the above procedure I, the E. coli transformation strain is cultured, and when cultured until OD600 = 0_6~0.8, it is added. Appropriate amount 11) Ding in order to induce the expression of the antifreeze protein encoding gene. 5 After 2 hours and 4 hours of 1PTG induction, 40 mL of the culture was taken out and centrifuged at 1000 x g and 4 ° C for 1 minute. The supernatant was collected, filtered through a 0.22 μηη filter membrane, and the filtrate was collected as a protein sample of the extracellular portion. The precipitate obtained after the above centrifugation was again suspended in 30 μL of T S 10 buffer. Then, 60 pL of EDTA was added, followed by slowly stirring at room temperature for 10 minutes. The supernatant was decanted by centrifugation at 10 °C for 10 minutes at 4 °C. The precipitate was again suspended in 30 mL of ice-cold MgS04 solution (5 mM MgS04, 10% TCA) and slowly stirred for 10 minutes in an ice bath. The supernatant was obtained by centrifugation at 10,000 x g and 4 ° C for 10 minutes to obtain a protein sample of 15 as a part of the cell wall space. The precipitate left after the above centrifugation was precipitated and concentrated by trichloroacetic ccid (TCA), and the precipitate was again dispersed in 4 mL of ice-cold Tris-HCl (pH 7.5), and lysozyme was added. , purchased from Sigma, final concentration of 100 pg/mL) and allowed to act at 30 ° C for 20 15 minutes. Thereafter, the cells were disrupted by ultrasonic treatment (XL Sonicator ultrasonic processor, Misonix Inc., Farmingdale, NY, USA). The resulting product was taken out in 1.5 mL and placed in a microtube, and centrifuged at 10,000 x g and 4 ° C for 10 minutes. Thereafter, the supernatant of 200 μΙ> was taken out as the intracellular soluble fraction 65 1321567. The revised version of the specification of the patent application No. 095118228 was amended: the protein sample of October 1, 1998, and the precipitate was a cell. Insoluble part. The pellet was washed twice with 2 mM Tns-HCl (pH 7.5) to avoid possible residual soluble proteins to interfere with experimental judgment. Thereafter, 丨5 mL &i% SDS was added to reconstitute the insoluble protein, which was then heated and vigorously mixed, until the precipitate was completely dispersed in the solution, thereby serving as a protein sample of the insoluble portion of the cell. . Protein samples of different bacterial fractions were mixed with 5X sample buffer (or 2X sample buffer) and heated at 10 ° C for 5 minutes. 'Tricine_SDs PAGE for egg 10 white matter Electrophoresis. The operation of Tricine-SDS PAGE is described in accordance with the method of H. Schagger and G. von Jagow (1987), Anal. Biochem" 166: 368-379, and is modified. First, a polypropylene decylamine is prepared. Film, which is divided into 3 layers, respectively, is a stacking gel (4% T, 3% 〇, spacer gel (10% T, 3% 〇, and separation gel (separati〇n) Gel) (16.5/i T, 3/» C) 'The protein sample is then loaded (i〇a(jing) into the sample well with 0.2 M Tris-base (pH 8.9) as the positive buffer and Electrophoresis was carried out at a voltage of 80 V using 0.1 M Tris-base (containing oi μ Tricine, 0.1% SDS, pH 8.25) as a negative electrode buffer, and stopped when the tracking dye ran to the bottom of the gel sheet. Electrophoresis: The coagulation piece was then stained with a 10% acetic acid solution containing 0.025% masal blue R-250 (c〇〇massive blue R-250) for an hour and a half. After that, it was treated with 1〇0/〇 acetic acid solution. Dyeing. Purification of the dish-recombinant antifreeze protein analog: 66 Revision No. 095H8228 Patent Application Revision Date: October 10, 1998 Cardiac treatment (10 μg, 4 ° C, 1 〇 minutes) to harvest the transfected cells cultured according to the above procedure I and induced by IPTG, thereby obtaining the supernatant fraction (ie, extracellular Part of the performance) first filter the membrane with 〇22^ claws; consider 'collecting the liquid' and then concentrate it by ultrafiltration. 5 Add Tris, NaH2P04 and urea to the final concentration of the obtained concentrate. The pH of the resulting mixture was adjusted to 8.0 at 10 mM, 100 mM, and 8 Torr, and allowed to slowly mix for 1/2 hour at room temperature. In addition, the cells > cell pellete were resuspended (re -suspend) in a sonication buffer, followed by ultrasonic treatment with a Sonicator 10 (Ultrasonic processor model XL; Heat Systems, Farmingdale, NY) to break the cells. Thereafter, centrifugation (10000 x g '10 minutes) And a soluble portion and an insoluble portion are obtained. The insoluble portion is resuspended in a lysis buffer, and the soluble portion is added to a final concentration of 8 M. Leave at room temperature slowly 15 Stir for 1 hour. Purification of the protein was carried out according to the method of The QIAexpressionistTM (fourth edition, Qiagen), in which the histidine acid (Histidine) was purified in a batch manner in a densuring environment (in a batch manner). ) protein. The purification procedure was as follows: 4 ml of the 20 protein sample was uniformly mixed with 1 mL of Ni-NTA resin, and subjected to rotating shaking for 2 hours at room temperature. The resin and protein sample mixture was packed in a column and rinsed with 4 mL Wash Buffer C1 [wash buffer C1, containing 100 mM NaH2P04, 10 mM Tris-Cl, 8 尿素 urea (urea), pH 7.0] at room temperature. Resin twice, then 4 mL of washing buffer C2 67 1321567 No. 095118228 patent application revision page correction period: October 1st, 1998 (containing 100 mM NaH2P〇4, lOmM Tris-Cl, 8 Μ urea, pH 6.3) The resin was rinsed twice to separate the protein that could not be bound to the resin. Finally, 2 mL of elution buffer D (containing 100 mM NaH2P04, 10 mM Tris-Cl, 8 Μ urea, pH 5.9) and 2 mL of Washing 5 rinsing E (containing 100 mM NaH2P04, lOmM Tris) -Cl, 8 M urea, pH 4.5) The protein adsorbed on the resin was flushed out. At the time of elution, every 5 5 mL of eluate was collected in a test tube. Figure 9 shows the results of 10 Tricine-SDS-PAGE electrophoresis of recombinant antifreeze protein analogs produced by the E. coli transformed strains obtained in the foregoing Examples 2 to 4, wherein the diameter M: low molecular weight protein label; Path 1 : Protein purified from the cytoplasmic portion of E. coli M15 (pREP4, pQE30-AFP); diascript 2: protein partially purified from the medium of E. coli BL21 (DE3) (pET12a-AsAFP); run 3: from the large intestine Protein purified from the intracellular 11 soluble fraction of Bacillus sp. BL21 (DE3) (pET12a-AsAFP); PATH 4: Protein purified from the insoluble fraction of cells in E. coli BL21 (DE3) (pET12a-AsAFP); : a protein purified from the intracellular soluble fraction of Escherichia coli BL21 (DE3) (pET12a_〇SAFP); and a diameter 6: purified from the intracellular insoluble fraction of Escherichia coli BL21 (DE3) (pET12a-OsAFP) 20 proteins. According to the experimental results, the recombinant antifreeze protein analog produced by the E. coli transformed strain obtained in Example 2-3 is located in the host cell, and can be roughly summarized as follows: 1. Escherichia coli M15 (pREP4, Recombination generated by pQE30-AFP) 68 1321567 Revision No. 095118228 Patent Revision Date: 98 years of the first month of the antifreeze protein analogue is mainly present in the soluble part of the cell, with a molecular weight of approximately 6.48 kDa; 2. The rAFP produced by E. coli BL21 (DE3, pET-12a-AsAFP) is mainly present in the extracellular (supernatant) fraction, while the soluble and insoluble fractions in the cell can also be purified to protein. The recombinant antifreeze protein analog purified from the insoluble portion of the cell has a large molecular weight (about 8.14) and is presumed to have a message peptide (path 4). Recombination from the extracellular and intracellular soluble fractions
抗凍蛋白類似物分子量較小(約為5.42 kDa)。N端定 序結果顯示出:源自於嗜驗性枯草桿菌YaB (alkalophilic YaB)的驗性彈性蛋白酶的訊 息胜肽能為大腸桿菌BL21(DE3)宿主細胞所辨識並 切除(徑2、徑3); 15 20 3.大腸桿菌BL21(DE3,pET-12a-0sAFP)所生成的重組 型抗凍蛋白類似物主要是存在於細胞内不可溶部分 中,而細胞内可溶部分中亦可純化到蛋白質。自細 胞内了;谷部分可純化到兩種分子量不同的蛋白質 (估計分子量約為7.53及5·41 kDa)。我們推測分子量 較小者可能為N端訊息胜肽被切除的重組型抗; 東蛋 ^類似物’它的移動位置接近於所預期者。而分子 =較大的電料有可能因為帶有較多疏水性胺基 實祐如酸’因此它的移動較快,而比預期的位置移動為快。 6·由大腸桿菌轉形株所生產的重組型抗;東蛋白類似 物在減小冰晶形成的能力上的分析 69 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 由前述實施例所得到的大腸桿菌轉形株所生成並經純 化的重組型抗凍蛋白類似物被測試是否具有抗凍能力,其 中利用Linkam HFS91 cold stage配合顯微照相系統來測定 該專重組型抗凌蛋白類似物在減小冰晶形成以及修飾冰晶 5 構形的能力。 依照前述“一般實驗方法與材料”當中所述的抗凍蛋白 活性分析方法’將不同濃度的2 pL的重組型抗凍蛋白類似 物溶液[配於水或緩衝液(1〇〇 mM NaH2P〇4,10 mM Tds-HCl,pH 8.0)内]置於一載玻片上,並覆蓋以一蓋玻片, 10 然後放入至Linkam HFS91 cold stage中,將溫度急速降至 -40°C ’並觀察冰晶的形成形式。 圖10顯示依據本發明的重組型抗凍蛋白類似物所產生 的減少冰晶形成的效用,其中A區顯示水所形成的冰晶,顆 粒極大;B區顯示以含8 Μ尿素的溶菌緩衝液所形成的冰 15 晶,顆粒較小;C區為從大腸桿菌M15(pREP4,pQE30-AFP) 的細胞質部分所純化出的蛋白質,D區為從大腸桿菌 BL21 (DE3)(PET 12a-AsAFP)的培養基部分所純化出的蛋白 質,E區為從大腸桿菌BL21(DE3)(pET12a-AsAFP)的可溶部 分所純化出的蛋白質,F區為從大腸桿菌 20 BL21(DE3)(PET12a-AsAFP)的不可溶部分所純化出的蛋白 質;G區為從大腸桿菌BL21(DE3)(pET12a_〇sAFp)的可溶部 分所純化出的蛋白質’以及Η區為從大腸桿菌 BL21(DE3)(pET12a-OsAFP)的不可溶部分所純化出的蛋白 質。C〜Η區的結果顯示在重組型抗凍蛋白類似物的存在下 70 1321567 第〇95118228號專利申請索說明書修正頁 修正日期:98年10月!日 所形成的冰晶均顯著較小,而證實依據本發明的重組型抗 凍蛋白類似物均具有減小冰晶形成的能力。 實施例7.具有不同胺基酸重複單元數目的抗凍蛋白類似物 之核酸編碼序列以及它們的攜帶載體的構築 5 本實施例進一步構築3種不同的抗凍蛋白類似物表現 載體,它們各自攜帶有一個核酸片段編碼一具有不同胺基 酸重複單元數目的抗康蛋白類似物,亦即抗;東蛋白(AFp) 類似物1A(包含有4個抗凍單元)、抗凍蛋白類似物2A (包含 有8個抗;東單元)以及抗康蛋白類似物3A (包含有12個抗床 10 單元)’它們的表現載體被示意地顯示於圖11。 圖12示意地例示說明利用聚合酶連鎖反應法(PCR),使 用下面表5中所示的引子,並以質體載體pET-12a-AsAFP或 p-RP-AFP當中的AFPI基因作為模版,來分別大量地擴增出 編碼該等抗凍蛋白類似物ΙΑ、2A與3A的PCR產物。 15 表5.用於合成抗凍蛋白類似物ΙΑ、2A與3A的核酸編碼序列的引子 引子名稱 核苷酸序列(5·-3·) Ndelsp-AFP Ndel 5'-gatata£^iai£aataagaaaatggggaaaattgttgc-3’(序列辨識編號:29) KpnI-AFP Kpnl 5’-caatat^ftiacc-patacagcgtcagatgcggc-3,(序歹ΐΐ辨識编號:30) BamHI-AFP BamHl 5’-catattg1gai££tgatacagcgtcagatgcgg-3,(序列辨識编號:31) KpnITAR-AFP Kpnl S’-tapataggtacctcttac2stggcapcggct-3* (序列辨議编我:32) BamHIGDP-AFP Bamm V-ttactteeatcccctctteceeteecaeceect-V i床利辨饿編號:33) SpeSalHtagTAA-AFP Sail Spe\ 5*-tagataktcgadia£itattagtggtggtggtest2ststci>3’(序列辨識编 號:34) 註:位於引子内的限制酶切割位址被劃底線或劃框標示出’其中及^1與The antifreeze protein analog has a small molecular weight (approximately 5.42 kDa). The N-terminal sequencing results showed that the informative peptide derived from the experimental elastase of the albileophilic YaB (alkalophilic YaB) can be recognized and excised by the E. coli BL21 (DE3) host cell (diameter 2, diameter 3 15 20 3. The recombinant antifreeze protein analog produced by E. coli BL21 (DE3, pET-12a-0sAFP) is mainly present in the insoluble part of the cell, and the soluble part in the cell can also be purified. protein. Self-celling; the trough fraction can be purified to two proteins of different molecular weights (estimated molecular weights of approximately 7.53 and 5.41 kDa). We hypothesized that the smaller molecular weight may be a recombinant resistance in which the N-terminal message peptide is cleaved; the East Egg ^ analog's position is close to the expected one. The numerator = larger electric material is likely to move faster because it has more hydrophobic amine groups, so it moves faster than the expected position. 6. Recombinant anti-resistant strain produced by E. coli transformant; analysis of the ability of the eastern protein analog to reduce the formation of ice crystals 69 1321567 Patent Application No. 095118228 Revision of the revised page: October 1st, 1998 The recombinant antifreeze protein analog produced by the E. coli transformed strain obtained in the previous examples was tested for its antifreeze ability, and the specific anti-freezing resistance was determined by using a Linkam HFS91 cold stage in combination with a photomicrography system. The ability of the merlin analog to reduce ice crystal formation and modify the ice crystal 5 configuration. Different concentrations of 2 pL of recombinant antifreeze protein analog solution [with water or buffer (1 mM NaH2P〇4) according to the "Anti-freeze protein activity analysis method described in the above "General Experimental Methods and Materials" , 10 mM Tds-HCl, pH 8.0) was placed on a glass slide and covered with a coverslip, 10 and then placed in a Linkam HFS91 cold stage, the temperature was rapidly reduced to -40 ° C ' and observed The form of ice crystal formation. Figure 10 is a graph showing the effect of reducing the formation of ice crystals by the recombinant antifreeze protein analog according to the present invention, wherein the A region shows ice crystals formed by water and the particles are extremely large; and the B region is formed by lysing buffer containing 8 guanidine urea. Ice 15 crystals, smaller particles; C region is a protein purified from the cytoplasmic portion of E. coli M15 (pREP4, pQE30-AFP), and D region is a medium from Escherichia coli BL21 (DE3) (PET 12a-AsAFP) Part of the purified protein, the E region is a protein purified from the soluble portion of E. coli BL21 (DE3) (pET12a-AsAFP), and the F region is not from E. coli 20 BL21 (DE3) (PET12a-AsAFP). The protein purified from the soluble fraction; the G region is a protein purified from the soluble fraction of Escherichia coli BL21 (DE3) (pET12a_〇sAFp) and the sputum region is from Escherichia coli BL21(DE3) (pET12a-OsAFP) The protein purified from the insoluble fraction. The results of the C~Η region are shown in the presence of recombinant antifreeze protein analogues. 70 1321567 Patent No. 95118228 Patent Application Specification Revision Date: October 1998! The ice crystals formed on the day were significantly smaller, and it was confirmed that the recombinant antifreeze protein analogs according to the present invention have the ability to reduce ice crystal formation. Example 7. Nucleic acid coding sequences of antifreeze protein analogs having different number of repeating units of amino acid and their carrier construction 5 This example further constructs three different antifreeze protein analog expression vectors, each of which carries There is a nucleic acid fragment encoding an anti-conne analog having a number of repeating units of different amino acids, ie, an anti-; Eastin (AFp) analog 1A (containing 4 antifreeze units), an antifreeze protein analog 2A ( Containing 8 anti-; East units) and anti-Kang analogs 3A (containing 12 anti-bed 10 units) 'their expression vectors are shown schematically in Figure 11. Figure 12 is a schematic illustration of the use of the polymerase chain reaction (PCR), using the primers shown in Table 5 below, and using the AFPI gene in the plastid vector pET-12a-AsAFP or p-RP-AFP as a template. The PCR products encoding the antifreeze protein analogs ΙΑ, 2A and 3A were amplified in large amounts, respectively. 15 Table 5. Primer Names of Nucleic Acid Coding Sequences for Synthesis of Antifreeze Protein Analogs 2, 2A and 3A Nucleotide Sequences (5·-3·) Ndelsp-AFP Ndel 5'-gatata£^iai£aataagaaaatggggaaaattgttgc- 3' (SEQ ID NO: 29) KpnI-AFP Kpnl 5'-caatat^ftiacc-patacagcgtcagatgcggc-3, (Serial Identification Number: 30) BamHI-AFP BamHl 5'-catattg1gai££tgatacagcgtcagatgcgg-3, (sequence Identification number: 31) KpnITAR-AFP Kpnl S'-tapataggtacctcttac2stggcapcggct-3* (sequence resolution: 32) BamHIGDP-AFP Bamm V-ttactteeatcccctctteceeteecaeceect-V i bed identification number: 33) SpeSalHtagTAA-AFP Sail Spe\ 5*-tagataktcgadia£itattagtggtggtggtest2ststci>3' (sequence identification number: 34) Note: The restriction enzyme cleavage site located in the primer is underlined or framed to indicate 'where and ^1 and
Spel的切割位址有重疊。Spel's cutting addresses overlap.
PCR的反應内容物為100 μι的反應緩衝液[20 mM 71 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰The reaction content of the PCR is 100 μm of the reaction buffer [20 mM 71 1321567 No. 095118228 patent application revision page Revision period: October 1st, 1998
Tris-HCl,10 mM KC1,1〇 mM (NH4)2S04, 2 mM MgS04, 0.1% Triton® X-100, 0.1 mg/mL不含核酸酶的BSA],當中含 有各為400 μΜ的dATP、dTTP、dGTP與dCTP,2 μΜ擴增引 子 ’ 50 ng模版(pET-12a-AsAFP或p-RP-AFP)以及2.4 U /?/« 5 DNA聚合酶。PCR的反應條件為:94°c下2分鐘,1個循環; 94°C下30秒、59°C下30秒、72°C下1分鐘,35個循環;72°C 下7分鐘,1個循環)。 反應完成之後’所得到的PCR產物依序以酚/氣仿/異戊 醇(v/v/v = 25:24:l)以及氯仿/異戊醇(v/v = 24:l)萃取一次。 10 之後,取含有DNA的溶液,予以加入2倍體積的無水酒精以 及0.1倍體積的3 Μ醋酸鈉(pH 5.2)並靜置於-70°C下歷時1小 時以使DNA沉澱。經70%酒精洗滌去鹽[desalt]與真空蒸發 (vacuum evaporation)後,將DNA回溶於適量的滅菌去離子 水内,並貯存於-20°C下備用。 15 上述所得到的編碼該等抗凍蛋白類似物1A、2A與3A的 PCR產物以及質體pET29a (Novagen, USA)分別以適當限制 酶予以切割’繼而利用Gene-SpinTM Extraction kit來回收插 入物DNA以及載體DNA。就所得到的兩種切割產物,將載 體DNA與插入物DNA以一為1 : 5的莫耳比來進行接合。之 20後,利用電轉形法將由此所得到的接合產物送入至大腸桿 菌菌株DH10B的細胞内。隨機挑選轉形株並予以抽取質體 載體’繼而進行限制酶切割確認以及DNA定序。 使用引子Ndelsp-AFP以及引子SpeSalHtagTAA-AFP所 擴增出的PCR片段以iW/el與限制酶切割,繼而將切割產 72 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 物插入至質體pET29a内,而構築出一個質體被命名為 pSPlAtag。 使用引子Ndelsp-AFP以及KpnlTAR-AFP所擴增出的 PCR片段以與尤/mI限制酶切割,繼而將切割產物插入 5 至質體pET29a内,而形成質體pNK。之後,使用引子 KpnIAFP與SpeSalHtagTAA-AFP所擴增出的PCR片段以 及限制酶切割,繼而將切割產物插入至質體pNK 内,而構築出一個質體被命名為pSP2Atag。 使用引子BamHI-AFP與SpeSalHtagTAA-AFP所擴增出 10 的PCR片段’以及限制酶切割,繼而將切割產物 插入至質體pET29a内,而構築成質體PBS。之後,使用引 子KpnIAFP及BamHIGDP-AFP所擴增出的PCR片段以母《I 及限制酶切割,繼而將切割產物插入至質體pBS内, 而構築成質體pKBS。最後,使用Ndelsp-AFP及 15 KpnITAR-AFP所擴增出的pcr片段以爪/eI及你限制酶切 割,繼而將切割產物插入至質體pKBS,而構築出一個質體 被命名為pSP3Atag。 將上述重組型抗凍蛋白類似物表現載體個別地轉形至 蛋白貝表現伤主大腸桿菌BL21(DE3)中,由此所形成的轉形 20株細胞被培養於13/康那黴素培養基内,之後加入0.4 mM IPTG來進行蛋白質之誘生。收集培養基部分以及總細胞包 溶物,並以Tricine_SDS_PAGE來分析蛋白質的表現。另外, 利用Ni-NTA親和性樹脂來純化培養基部分内的重組型抗 終白類似物。所得結果如圖13與14所示。純化所得的重 73 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 組型抗凍蛋白類似物被進一步進行抗凍活性分析,結果如 圖16-20所示。 由圖13與14得知,於〇.4 mMIPTG誘導之後,大腸桿菌 BL21(DE3)(pSPlAtag)、大腸桿菌 BL21(DE3)(pSP2Atag)以 5及大腸桿菌BL21(DE3)(pSP3Atag)於細胞内部分以及培養 基部分皆可觀察到有抗凍蛋白的表現情形,這顯示含有嗜 鹼性枯草桿菌YaB (alkalophilic 5_7心YaB)的鹼性彈性蛋 白酶訊息胜肽之重組型抗凍蛋白類似物皆可被表現並可被 分泌或滲漏至胞外’而且表現量至少在1〇mg/L以上。 10 參見圖15 ’大腸桿菌BL21(DE3)(pSP2Atag)的表現量可 達致90 mg/L以上;大腸桿菌BL2i(DE3)(pSPlAtag)的表現 量最少可達 19 mg/L ;五.eo"BL21 (DE3) (pSP3Atag)之 表現量最少可達10 mg/L。 L. Tong等人曾將人工合成抗束蛋白基因嵌入含tac啟 15動子之表現載體中,於基因層次上融合以大腸桿菌〇mpA 的訊息胜肽編碼序列,經誘導表現32小時後,被表現於細 胞外的抗减蛋白產量為16 mg/L (Z. 扣α/· ("2000), 尸咖也及^· hn/,⑻)。於本發明中,大腸桿菌 BL21 (DE3)(pSP2Atag)與大腸桿菌 BL21 (DE3)(pSP 1 Atag)的 20抗凍蛋白表現量要比Tong等人所報導的數據為高,且生產 所花費的時間也較短。 參見圖16-20,依據本發明的重組型抗凍蛋白類似物 1A、2A與3A具有抑制冰晶再結晶之能力,同時它們的pH 值安定性均極佳,在pH 2-12範圍内均具有抗凍活性。在熱 74 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 安定性方面,以重組型抗凍蛋白類似物3A最佳,而重組型 抗床蛋白類似物1A與2A亦有不錯的熱安定性表現。至於抗 凍蛋白抑制冰晶形成的最小抑制濃度(MIC),重組型抗凍蛋 白類似物ΙΑ、2A與3A被測得的數值分別為3〇网/叫、35 5 pg/pL以及35 μδ/μί。 基於以上所示’本發明被預期具有發展成為抗凍劑的 潛力來供應用在食品、製藥、生物技術與基因工程等產業 領域上。 •於本說明書中破引述之所有文獻資料與專利案以其整 體被併入本案作為參考資料。若有所衝突時,本案的詳細 說明(包含界定在内)將佔上風。 雖,、、、本發明已參考上述特定的具體例被描述,明顯地 在不背離本發明的範圍和精神下,可以作出很多的修改和 變化。因此意欲的是,本發明僅受如隨文檢附的申請專利 15範圍所示者的限制》 75 1321567 ji / 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 I:圖式簡單說明j 圖1顯示依據本發明而被設計出的抗凍蛋白類似物1 (序列辨識編號:20)與抗凍蛋白類似物丨,(序列辨識編號 的胺基酸序列’其中就抗凍蛋白類似物1而言,X1 = Gly, 5 X2 — Ser,以及就抗凍蛋白類似物1 ’而言,X丨=Asp,X2= Pro ; 圖2示意地例示說明利用重疊延伸聚合酶連鎖反應法 (overlapping-extension polymerase chain reaction, OEPCR) > 使用4個在它們的序列之間存在有互補性的引子(primers) 10 來生成一編碼圖1中所示的抗凍蛋白類似物1的PCR產物, 其中:標號2與標號3分別表示模版引子(template primer), 該二模版引子於它們的3’端處是彼此互補的;標號1表示用 於擴增標號2的模版引子之擴增引子(amplifying primer)或 前向引子(forward primer);以及標號4表示用於擴增標號3 15的模版引子之擴增引子或前向引子。當PCR反應開始時, 模版引子會先黏合並延伸(以3’至5’之DNA為模版,並從5, 到3’的方向開始延伸)’因而生成全長的DNA。之後,擴增 引子以全長的DNA作為模版而開始大量擴增DNA片段; 圖3顯示一質體載體pRP的構建流程,其中:ori-17,大 20 腸桿菌co/z·)質體pACYC 177的複製起始點; ρΑΜα 1的複製起始點;A〆,胺苄青黴素抗性基因 (ampicillin resistant gene); Tcr,四環素抗性基因(tetracycline resistant gene) ; P,啟動子(promoter) ; SD,SD 序列 76 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 (Shine-Dalgarno sequence) ; pre,訊息胜肽(signal peptide) 的DNA編碼序列;pro,前序列(prosequence)的DNA編碼序 列,它與蛋白酶(protease)的摺疊(folding)以及分泌 (secretion)有關;成熟的(mature),成熟蛋白酶的DNA編碼 5 序列,MCS ’ 多重選殖位址(multiple cloning site) ; β/eC, α/eE下游的DNA序列,它可能包含有轉錄終止子(terminator) 的序列; 圖4顯示使用表2中的引子並利用重疊延伸聚合酶連鎖 反應法(overlapping-extension polymerase chain reaction, 10 OEPCR)而被獲得的PCR產物的瓊脂糖凝膠電泳結果,其中 徑Μ : 100 bp DNA分子標記;徑1 :使用引子AFP-办为/、 AFP-SS、AFP1與AFP2來進行OEPCR所得到的PCR產物;以及徑 2 :使用引子 AFP-5i?mHI、AFP-SS、AFP1 與AFP2 來進行OEPCR 所得到的PCR產物; 15 圖5顯示一質體載體PRP-AFP的構建流程; 圖6顯示一質體載體PQE30-AFP的構建流程,其中: /acO ’ /ac啟動子;ori-pBR322,pBR322的複製起始點; PQE30終止子(pQE30 terminator),它包含有Lambda沁轉錄 終止區域(Lambda 的 transcriptional termination region)以及 20 T1轉錄終止區域Τι transcriptional termination region); 圖7顯示一質體載體pET12a-AsAFP的構建流程,其中 訊息胜肽是大腸桿菌外膜蛋白酶〇mpT的訊息胜肽; 圖8顯示一質體載體pET12a-OsAFP的構建流程; 77 1321567 , j 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 圖9顯示由大腸桿卤轉形株(五· co/z· transf〇nnants)所生 成並經純化的重組型抗凍蛋白類似物的Tricine_SDs_PAGE 電泳結果,其中徑Μ:低分子量蛋白質標記;徑丨:從大腸 桿菌 M15(pREP4, PQE30-AFP)的細胞質部分(cytoplasm 5 fraction)純化出的蛋白質;徑2 :從大腸桿菌 BL21(DE3)(pET12a- AsAFP)的培養基部*(me£jium fracti〇n) 純化出的蛋白質;徑3 :從大腸桿菌 BL21 (DE3 )(pET 12a-As AFP)的細胞内可溶部分(intracellular soluble fraction)純化出的蛋白質;徑4 :從大腸桿菌 10 BL21(DE3)(pET12a-AsAFP)的細胞内不可溶部分 (intracellular insoluble fraction)純化出的蛋白質;徑 5:從大 腸桿菌BL21(DE3)(pET12a-OsAFP)的細胞内可溶部分純化 出的蛋白質;以及徑6 :從大腸桿菌BL21(DE3)(pET12a_ OsAFP)的細胞内不可溶部分純化出的蛋白質;以及 15 圖10顯示依據本發明的重組型抗凍蛋白類似物所產生 的減少冰晶形成的效用,其中,A區(panel A):水;B區(panel B):含有8 Μ尿素(urea)的溶菌緩衝液〇ysis buffer) ; c區 (panel C):從大腸桿菌M15(PREP4, PQE30-AFP)的細胞質部 分純化出的蛋白質;D區(panel D):從大腸桿菌 20 BL21(DE3)(PETl2a-AsAFP)的培養基部分純化出的蛋白 質;£區咖1^1丑):從大腸桿菌肌21(〇丑3)(?丑丁12&-八8八?卩) 的細胞内可溶部分純化出的蛋白質;F區(panelF):從大腸 桿菌肌21(0£3)邮1'123-八3八卩卩)的細胞内不可溶部分純化 出的蛋白質;G區(panel G):從大腸桿菌BL21(DE3)(pET12a- 78 1321567 第095118228號專利申清案說明書修正頁 修正曰期:98年10月1曰 ◦sAFP)的細胞内可溶部分純化出的蛋白質;以及Η區(panel Η):從大腸桿菌BL21(DE3)(pET12a-OsAFP)的細胞内不可 溶部分純化出的蛋白質; 圖11是一示意圖,它顯示3個依據本發明的抗凍蛋白 5 (AFP)類似物 ΙΑ、2A與3A的表現載體pSPlAtag、pSP2Atag 與pSP3Atag的基因構成,其中:Sd,SD序列;ίρ,訊息胜 肤編碼DNA,α力7 ’抗;東蛋白基因;以及办加叹,(His)6 DNA ; 圖12示意地例示說明利用聚合酶連鎖反應法(pcr),使 用被描述於下面實施例7的表5中所示的引子,並以 10 pET-12a-AsAFP或p-RP_AFP當中的AFPI基因作為模版,來 生成編碼依據本發明的3種具有不同重複胺基酸單元數目 的抗凍蛋白類似物ΙΑ、2A與3A的PCR產物,其中:π,訊 息胜狀編碼DNA,的? ’抗;東蛋白基因;以及如容,(His)6 DNA ; 15 圖I3顯示大腸桿菌BL21(DE3)(pSPlAtag)、大腸桿菌 BL21(DE3)(pSP2Atag)與大腸桿菌 BL21(DE3)(pSP3Atag) 以1 mMIPTG予以誘導3小時之後,從培養基部分以及總細 胞胞溶物(total cell lysate)所收集的蛋白質的Tricine-SDS PAGE分析結果; 20 圖14顯示大腸桿菌BL21(DE3)(pSPlAtag)、大腸桿菌 BL21(DE3)(pSP2Atag)與大腸桿菌 BL21(DE3)(pSP3Atag) 以1 mMIPTG予以誘導3小時之後,從培養基部分所純化的 重組型抗凍蛋白類似物ΙΑ、2A與3A的Tricine-SDS PAGE分 析結果,其中徑1 :來自大腸桿菌BL21(DE3)(pSPlAtag)的 79 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 培養基部分的重組型抗凍蛋白類似物1A;徑2 :來自大腸桿 菌BL21 (DE3)(pSP2Atag)的培養基部分的重組型抗凍蛋白 類似物2A ;以及徑3 :來自大腸桿菌BL2l(DE3)(pSP3Atag) 的培養基部分的重組型抗凍蛋白類似物3A ; 5 圖15顯示以抗凍蛋白(AFP)類似物ία、2A與3A的表現 載體pSPlAtag、pSP2Atag與pSP3Atag予以轉形的大腸桿菌 BL21(DE3)的細胞生長以及重組型抗凍蛋白類似物1A、2A 與3 A的分泌產量; 圖16顯示重組型抗凍蛋白類似物1 a、2A與3A抑制冰晶 1〇再結晶的能力分析結果,其中重組型抗凍蛋白類似物ία、 2A與3A的濃度均為400 pg/pL ; C是對照組(PBS緩衝液,50 mM NaH2P04, 300 mM NaCl,pH 8.0);以及CAFPI是一商業 販賣的第I型抗凍蛋白(A/F protein Canada Inc·),該蛋白質 是從寒帶魚類(cold ocean fish)的血液分離而得的,純度在 15 90〜99% 間; 圖17顯示重組型抗束蛋白類似物ia、2A與3A的單一冰 晶構形觀察結果,其中重組型抗凍蛋白類似物丨八、2八與3A 的濃度均為400 pg/pL ; C是對照組(PBS緩衝液,50 mM NaH2P04, 300 mMNaCl,pH 8_0);以及cAFPI是一商業販賣 20的第1型抗束蛋白(A/F protein Canada Inc.),該蛋白質是從 寒帶魚類(cold ocean fish)的血液分離而得的,純度在 90〜99%間; 圖18顯示重組型抗凍蛋白類似物1A、2A與3A的PH值 安定性,其中重組型抗凍蛋白類似物1A、2A與3A的濃度均 80 1321567 第095118228號專利申請案說明書修正 夕 修正日期:98年10月1曰 為400 μβ/μί;以及C是對昭έ rpF^ 了…且(PBS^衝液,5〇 mM NaH2P04, 300 mM NaCl,pH 8.0); 圖19,,-員示重 且型抗束蛋白類似物與3八的熱安定 性,其中重組型抗凍蛋白類似物1八、2八與3八的濃度均為4〇〇 5㈣叫’以及C是對照組(PBS緩衝液’ 50 mM NaH2P04, 300 mM NaCl,pH 8.0);以及 圖20顯示重組型抗凍蛋白類似物ία、2A與3A的最小抑 制濃度(minimal inhibition concentration, MIC)。 【主要元件符號說明】 (無) 81 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 序列表 <110>國立中興大學 <120>抗凍蛋白類似物暨其核酸編碼序列以及它們的生產與應用 <130> AFP <160〉 44 <170> Patentln version 3.3Tris-HCl, 10 mM KC1, 1 mM mM (NH4) 2S04, 2 mM MgS04, 0.1% Triton® X-100, 0.1 mg/mL nuclease-free BSA], containing 400 μM each of dATP, dTTP , dGTP and dCTP, 2 μΜ amplification primers '50 ng template (pET-12a-AsAFP or p-RP-AFP) and 2.4 U /?/« 5 DNA polymerase. The reaction conditions for PCR were: 2 minutes at 94 ° C, 1 cycle; 30 seconds at 94 ° C, 30 seconds at 59 ° C, 1 minute at 72 ° C, 35 cycles; 7 minutes at 72 ° C, 1 Cycles). After the reaction was completed, the obtained PCR product was extracted once with phenol/form/isoamyl alcohol (v/v/v = 25:24:1) and chloroform/isoamyl alcohol (v/v = 24:1). . After 10, the DNA-containing solution was taken, and 2 volumes of anhydrous alcohol and 0.1 volume of sodium citrate (pH 5.2) were added and allowed to stand at -70 ° C for 1 hour to precipitate DNA. After desalt and vacuum evaporation with 70% alcohol, the DNA was dissolved back in an appropriate amount of sterile deionized water and stored at -20 ° C until use. 15 The PCR products encoding the antifreeze protein analogs 1A, 2A and 3A obtained above and the plastid pET29a (Novagen, USA) were cleaved with appropriate restriction enzymes, respectively. Then the Gene-SpinTM Extraction kit was used to recover the insert DNA. And carrier DNA. For the two cleavage products obtained, the carrier DNA and the insert DNA were ligated at a molar ratio of 1:5. After 20, the thus obtained ligation product was fed into the cells of Escherichia coli strain DH10B by an electrotransformation method. The transgenic plants were randomly selected and the plastid vector was extracted' followed by restriction enzyme cleavage confirmation and DNA sequencing. The PCR fragment amplified using the primer Ndelsp-AFP and the primer SpeSalHtagTAA-AFP was cleaved with iW/el and restriction enzymes, and then the plasmid was cleaved. 72 1321567 Patent No. 095118228 Revision of the patent application Revision date: October 1, 1998 The substance was inserted into the plastid pET29a, and a plastid was constructed and named pSP1Atag. The PCR fragment amplified using the primers Ndelsp-AFP and KpnlTAR-AFP was cleaved with the //mI restriction enzyme, and then the cleavage product was inserted into the plastid pET29a to form plastid pNK. Thereafter, the PCR fragment amplified by the primers KpnIAFP and SpeSalHtagTAA-AFP and the restriction enzyme cleavage were used, and then the cleavage product was inserted into the plastid pNK, and a plastid was constructed and designated as pSP2Atag. A PCR fragment of 10 amplified by the primers BamHI-AFP and SpeSalHtagTAA-AFP and restriction enzyme cleavage were used, and then the cleavage product was inserted into the plastid pET29a to construct a plastid PBS. Thereafter, the PCR fragment amplified using the primers KpnIAFP and BamHIGDP-AFP was cleaved with the parental "I and restriction enzymes, and then the cleavage product was inserted into the plastid pBS to construct a plastid pKBS. Finally, the PCR fragment amplified by Ndelsp-AFP and 15 KpnITAR-AFP was cleaved with the paw/eI and your restriction enzyme, and then the cleavage product was inserted into the plastid pKBS, and a plastid was constructed and named pSP3Atag. The above recombinant antifreeze protein analog expression vector was individually transformed into a protein shell expressing Escherichia coli BL21 (DE3), and the resulting transformed 20 strain cells were cultured in 13/connamycin medium. Then, 0.4 mM IPTG was added for protein induction. The medium fraction and total cell inclusions were collected and analyzed for protein performance by Tricine_SDS_PAGE. Further, a recombinant anti-whitening analog in the medium portion was purified using a Ni-NTA affinity resin. The results obtained are shown in Figures 13 and 14. Purification of the weight 73 1321567 Revision No. 095,118,228 Patent Revision Revision Date: October, 1998 1 The antifreeze protein analog was further analyzed for antifreeze activity and the results are shown in Figures 16-20. 13 and 14, after induction with 4 mM IPTG, Escherichia coli BL21 (DE3) (pSP1Atag), Escherichia coli BL21 (DE3) (pSP2Atag) was 5 and E. coli BL21 (DE3) (pSP3Atag) was intracellular. The expression of antifreeze protein was observed in the part and the medium part, which showed that the recombinant antifreeze protein analog containing the basic elastase message peptide of Bacillus subtilis YaB (alkalophilic 5_7 heart YaB) can be Performance can be secreted or leaked extracellularly' and the amount of expression is at least 1 〇 mg / L or more. 10 See Figure 15 'E. coli BL21 (DE3) (pSP2Atag) can reach more than 90 mg / L; E. coli BL2i (DE3) (pSPlAtag) performance of at least 19 mg / L; five. eo " BL21 (DE3) (pSP3Atag) can perform at least 10 mg/L. L. Tong et al. have embedded the synthetic anti-beam protein gene into the expression vector containing tac initiation 15 mobilization, and fused the E. coli 〇mpA message peptide coding sequence at the gene level. After induction for 32 hours, The extracellular production of anti-depressant protein was 16 mg/L (Z. deduction α/· ("2000), corpse coffee and ^· hn/, (8)). In the present invention, the expression of 20 antifreeze proteins of Escherichia coli BL21 (DE3) (pSP2Atag) and Escherichia coli BL21 (DE3) (pSP 1 Atag) is higher than that reported by Tong et al., and the production cost is The time is also short. Referring to Figures 16-20, the recombinant antifreeze protein analogs 1A, 2A and 3A according to the present invention have the ability to inhibit the recrystallization of ice crystals, and at the same time, they have excellent pH stability and have a pH ranging from 2 to 12 Antifreeze activity. In the heat 74 1321567 No. 095118228 patent application revision page revision date: October 1st, 1998, 1st, the recombinant antifreeze protein analog 3A is the best, and the recombinant anti-bed protein analogues 1A and 2A are also Have a good thermal stability performance. As for the minimum inhibitory concentration (MIC) of antifreeze protein inhibition of ice crystal formation, the measured values of recombinant antifreeze protein analogs 2, 2A and 3A were 3〇网/叫, 35 5 pg/pL and 35 μδ/μί, respectively. . Based on the above, the present invention is expected to have potential for development as an antifreeze for use in industries such as food, pharmaceutical, biotechnology and genetic engineering. • All documents and patents cited in this specification are incorporated by reference into this document as a reference. In the event of a conflict, the detailed description of the case (including definitions) will prevail. While the invention has been described with reference to the specific embodiments of the invention, it will be understood that many modifications and changes can be made without departing from the scope and spirit of the invention. It is therefore intended that the present invention be limited only by the scope of the patent application 15 as set forth in the accompanying application. 75 1321567 ji / 095118228 Patent Application Specification Revision Date: October 1998 1曰I: Figure BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 shows an antifreeze protein analog 1 (SEQ ID NO: 20) and an antifreeze protein analog 丨 designed according to the present invention, (the sequence identification number of the amino acid sequence ' For protein analog 1, X1 = Gly, 5 X2 - Ser, and for antifreeze protein analog 1 ', X丨 = Asp, X2 = Pro; Figure 2 schematically illustrates the use of overlap extension polymerase chain reaction Overlapping-extension polymerase chain reaction (OEPCR) > Using four primers 10 with complementarity between their sequences to generate a PCR encoding the antifreeze protein analog 1 shown in Figure 1. Product, wherein: reference numerals 2 and 3 respectively denote template primers, which are complementary to each other at their 3' ends; and reference numeral 1 denotes an amplification primer for amplifying the labeling primer of the label 2 (amplifying prime r) or a forward primer; and reference numeral 4 denotes an amplification primer or a forward primer for amplifying the template primer of reference numeral 3 15. When the PCR reaction starts, the template primer will first adhere and extend (to 3 The DNA of 'to 5' is a template and extends from the 5th to the 3' direction.] Thus, the full-length DNA is generated. Then, the amplification primer starts to amplify the DNA fragment in a large amount using the full-length DNA as a template; FIG. 3 shows The construction process of a plastid vector pRP, wherein: ori-17, E. coli co/z·) plastid pACYC 177 replication origin; ρΑΜα 1 replication initiation point; A〆, ampicillin resistance Gene (ampicillin resistant gene); Tcr, tetracycline resistant gene; P, promoter; SD, SD sequence 76 1321567 Patent 095118228 Patent application revision page Revision date: October 1, 1998 Shine-Dalgarno sequence; pre, the DNA coding sequence of the signal peptide; pro, the DNA coding sequence of the prosequence, which is folded and secreted by the protease. related Mature, mature protease DNA encoding 5 sequence, MCS 'multiple cloning site; β/eC, α/eE downstream DNA sequence, which may contain a transcription terminator Figure 4 shows the results of agarose gel electrophoresis of PCR products obtained using the primers in Table 2 and using the overlap-extension polymerase chain reaction (10 OEPCR), wherein the diameter is 100 Bp DNA molecular marker; PATH 1: PCR product obtained by OEPCR using primers AFP-, AFP-SS, AFP1 and AFP2; and diameter 2: using primers AFP-5i?mHI, AFP-SS, AFP1 and AFP2 to perform PCR products obtained by OEPCR; 15 Figure 5 shows the construction process of the plastid vector PRP-AFP; Figure 6 shows the construction process of the plastid vector PQE30-AFP, wherein: /acO ' /ac promoter; ori -pBR322, the origin of replication of pBR322; the PQE30 terminator, which contains the Lambda transcription termination region and the T1 transcription termination region. Ion region); Figure 7 shows the construction of a plastid vector pET12a-AsAFP, in which the message peptide is the message peptide of E. coli outer membrane protease 〇 mpT; Figure 8 shows the construction process of the plastid vector pET12a-OsAFP; 1321567, j Revision No. 095118228 Patent Application Revision Date: October 1, 1998 Figure 9 shows the recombinant form produced by the large intestine rod-shaped transgenic plants (five co/z·transf〇nnants) and purified. Results of Tricine_SDs_PAGE electrophoresis of antifreeze protein analogs, in which the diameter Μ: low molecular weight protein marker; 丨: protein purified from the cytoplasm 5 fraction of E. coli M15 (pREP4, PQE30-AFP); Protein purified from the medium portion of Escherichia coli BL21(DE3)(pET12a-AsAFP)*(me£jium fracti〇n); diameter 3: soluble in cells from Escherichia coli BL21 (DE3) (pET 12a-As AFP) Protein purified by intracellular soluble fraction; diameter 4: protein purified from intracellular insoluble fraction of Escherichia coli 10 BL21(DE3)(pET12a-AsAFP); Path 5: from Escherichia coli BL21 a protein purified from the intracellular soluble fraction of (DE3) (pET12a-OsAFP); and a protein purified from the intracellular insoluble portion of E. coli BL21 (DE3) (pET12a_OsAFP); and 15 Figure 10 shows The effect of reducing ice crystal formation by the recombinant antifreeze protein analog of the present invention, wherein panel A: water; panel B: lysate buffer containing 8 Μ urea (urea) Ysis buffer) ; c region (panel C): protein purified from the cytoplasmic portion of E. coli M15 (PREP4, PQE30-AFP); D region (panel D): from E. coli 20 BL21 (DE3) (PETl2a-AsAFP) Part of the medium purified from the protein; £ area coffee 1^1 ugly): from E. coli muscle 21 (〇 ugly 3) (? ugly Ding 12 & - eight 8 eight?细胞) a protein purified from the intracellular soluble fraction; F-region (panelF): a protein purified from the intracellular insoluble fraction of Escherichia coli muscle 21 (0£3) 1'123-八3 八卩卩) ;G-zone (panel G): purification of intracellular soluble fractions from E. coli BL21 (DE3) (pET12a-78 1321567, 095,118, 228, pp. 095, 218, 228, pp. Protein; and Η(panel Η): a protein purified from the insoluble portion of the cell of Escherichia coli BL21(DE3) (pET12a-OsAFP); Figure 11 is a schematic diagram showing three antibodies according to the invention Frozen protein 5 (AFP) analog ΙΑ, 2A and 3A expression vectors pSP1Atag, pSP2Atag and pSP3Atag gene composition, wherein: Sd, SD sequence; ίρ, message skin coding DNA, α力 7 'anti; East protein gene; And sigh, (His)6 DNA; Figure 12 schematically illustrates the use of the polymerase chain reaction (PCR), using the primers described in Table 5 below, Example 7, and with 10 pET-12a - AFPI gene in AsAFP or p-RP_AFP as a template to generate three types of coding according to the present invention There are PCR products of the antifreeze protein analogs 2, 2A and 3A with different numbers of repeating amino acid units, where: π, the message wins the DNA, and? 'Anti; East Protein Gene; and Rushen, (His)6 DNA; 15 Figure I3 shows Escherichia coli BL21 (DE3) (pSP1Atag), Escherichia coli BL21 (DE3) (pSP2Atag) and Escherichia coli BL21 (DE3) (pSP3Atag) Results of Tricine-SDS PAGE analysis of proteins collected from the medium fraction and total cell lysate after induction with 1 mM IPTG; 20 Figure 14 shows Escherichia coli BL21(DE3)(pSPlAtag), large intestine Bacillus BL21 (DE3) (pSP2Atag) and Escherichia coli BL21 (DE3) (pSP3Atag) Tricine-SDS PAGE of recombinant antifreeze protein analog ΙΑ, 2A and 3A purified from the medium fraction after induction with 1 mM IPTG for 3 hours The results of the analysis, wherein the diameter 1 is: from the Escherichia coli BL21 (DE3) (pSP1Atag) 79 1321567 No. 095118228 patent application revised page revision date: October 1998 1 曰 medium part of the recombinant antifreeze protein analog 1A; Path 2: Recombinant antifreeze protein analog 2A from the medium portion of E. coli BL21 (DE3) (pSP2Atag); and Run 3: recombinant antifreeze protein similar to the medium portion of E. coli BL2l (DE3) (pSP3Atag) 3A; 5 Figure 15 shows the cell growth of Escherichia coli BL21 (DE3) transformed with the antifreeze protein (AFP) analogs ία, 2A and 3A expression vectors pSP1Atag, pSP2Atag and pSP3Atag, and recombinant antifreeze protein analogues 1A, 2A and 3 A secretion yield; Figure 16 shows the results of the ability of recombinant antifreeze protein analogues 1 a, 2A and 3A to inhibit the recrystallization of ice crystal 1 ,, wherein the concentrations of recombinant antifreeze protein analogues ία, 2A and 3A are 400 pg/pL; C is a control group (PBS buffer, 50 mM NaH2P04, 300 mM NaCl, pH 8.0); and CAFPI is a commercially available type I antifreeze protein (A/F protein Canada Inc.), The protein is isolated from the blood of cold ocean fish with a purity between 15 and 99%; Figure 17 shows the observation of a single ice crystal configuration of the recombinant anti-beam protein analogues ia, 2A and 3A, Recombinant antifreeze protein analogs were at a concentration of 400 pg/pL for octa-8, arsenic and 3A; C was a control group (PBS buffer, 50 mM NaH2P04, 300 mM NaCl, pH 8_0); and cAFPI was a commercial sale 20 Type 1 anti-beam protein (A/F protein Canada Inc.), the protein is from The purity of the fish with cold fish fish is between 90 and 99%; Figure 18 shows the pH stability of the recombinant antifreeze protein analogues 1A, 2A and 3A, wherein the recombinant antifreeze protein is similar. The concentrations of the materials 1A, 2A and 3A are all 80 1321567. The amendment of the specification of the patent application No. 095118228 is amended on the date of October: 1 October, 400 μβ / μί; and C is the pair of Zhao έ rpF^ and (PBS ^ flushing 5 mM NaH2P04, 300 mM NaCl, pH 8.0); Figure 19, - indicates the thermal stability of the heavy-type anti-beam protein analog with 3-8, wherein the recombinant anti-freeze protein analogues 1-8, 2-8 The concentration of each of the three and eight is 4〇〇5 (four) called 'and C is the control group (PBS buffer '50 mM NaH2P04, 300 mM NaCl, pH 8.0); and Figure 20 shows the recombinant antifreeze protein analogue ία, 2A and 3A minimum inhibition concentration (MIC). [Description of main component symbols] (None) 81 1321567 Patent Application No. 095118228 Revision Date: October 1st, 1998 Sequence Listing <110> National Chung Hsing University <120> Antifreeze Protein Analogs and Nucleic Acids thereof Coding sequences and their production and application <130> AFP <160> 44 <170> Patentln version 3.3
<210〉 1 <211> 37 <212> PRT <213〉寒冬比目魚(Winter flounder) <400〉 1<210〉 1 <211> 37 <212> PRT <213> Winter Flounder <400〉 1
Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala Ala Asn 15 10 15Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala Ala Asn 15 10 15
Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala 20 25 30Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala 20 25 30
Ala Ala Thr Ala Arg 35 <210〉 2 <211> 37 <212> PRT <213〉寒冬比目魚 <400〉 2Ala Ala Thr Ala Arg 35 <210〉 2 <211> 37 <212> PRT <213> Winter Flounder <400〉 2
Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala Ala Asn 15 10 15Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala Ala Asn 15 10 15
Ala Lys Ala Ala Ala Lys Leu Thr Ala Asp Asn Ala Ala Ala Ala Ala 20 25 30Ala Lys Ala Ala Ala Lys Leu Thr Ala Asp Asn Ala Ala Ala Ala Ala 20 25 30
Ala Ala Thr Ala Arg 35 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210〉 3 <211> 56Ala Ala Thr Ala Arg 35 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998 <210> 3 <211> 56
<212> PRT <213〉寒冬比目魚 <400> 3<212> PRT <213> Winter Flounder <400> 3
Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Thr 15 10 15Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Thr 15 10 15
Ala Ala Ala Ala Ala Ala Ala Thr Ala Val Thr Ala Ala Lys Ala Ala 20 25 30Ala Ala Ala Ala Ala Ala Ala Thr Ala Val Thr Ala Ala Lys Ala Ala 20 25 30
Ala Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala 35 40 45Ala Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala 35 40 45
Ala Ala Arg Gly Ala Ala Arg Gly 50 55 <210> 4 <211> 12 <212〉 PRT <213>寒冬比目魚 <220> <221〉MISC_特徵 <222〉 (1)..(12) <223〉5a-狀蛋白質(5a-like protein)的N-端部分胺基酸序歹ϋ <220> <221〉MISCjt徵 <222〉⑴ _. (1) <223〉 Xaa can be Asn, Thr or Ala <300〉 <301> C.B. Marshall et al. <303> J. Biol. Chem. <304> 280 2 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <305> 18 <306〉 17920-17929 <307> 2005-05-06 <400> 4Ala Ala Arg Gly Ala Ala Arg Gly 50 55 <210> 4 <211> 12 <212> PRT <213> Winter Flounder <220><221>MISC_Features<222> (1). (12) <223>5--like protein N-terminal partial amino acid sequence 歹ϋ <220><221>MISCjt sign <222>(1) _. (1) < 223> Xaa can be Asn, Thr or Ala <300> <301> CB Marshall et al. <303> J. Biol. Chem. <304> 280 2 1321567 Patent Publication No. 095118228 Revision date: October 1st, 1998<305> 18 <306> 17920-17929 <307> 2005-05-06 <400> 4
Xaa He Asp Pro Ala Ala Arg Ala Ala Ala Ala Ala 1 5 10Xaa He Asp Pro Ala Ala Arg Ala Ala Ala Ala Ala 1 5 10
<210〉 5 <211> 48 <212> PRT <213〉美洲黃蓋鲽(Yellowtail flounder) <400> 5<210> 5 <211> 48 <212> PRT <213>Yellowtail flounder <400>
Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Ala 15 10 15Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Ala 15 10 15
Ala Ala Lys Ala Ala Ala Asp Thr Ala Ala Ala Ala Ala Lys Ala Ala 20 25 30Ala Ala Lys Ala Ala Ala Asp Thr Ala Ala Ala Ala Ala Lys Ala Ala 20 25 30
Ala Asp Thr Ala Ala Ala Ala Ala Glu Ala Ala Ala Ala Thr Ala Arg 35 40 45Ala Asp Thr Ala Ala Ala Ala Ala Glu Ala Ala Ala Ala Thr Ala Arg 35 40 45
<210〉 6 <211> 40 <212> PRT <213〉阿拉斯加鲽魚(Alaskan plaice) <400〉 6<210> 6 <211> 40 <212> PRT <213> Alaskan plaice <400> 6
Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Ala 15 10 15Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Ala Thr Ala Ala Ala 15 10 15
Ala Lys Ala Ala Ala Glu Lys Thr Ala Arg Asp Ala Ala Ala Ala Ala 20 25 30 3 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰Ala Lys Ala Ala Ala Glu Lys Thr Ala Arg Asp Ala Ala Ala Ala Ala 20 25 30 3 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998
Ala Ala Thr Ala Ala Ala Ala Arg 35 40Ala Ala Thr Ala Ala Ala Ala Arg 35 40
<210> 7 <211> 32 <212> PRT <213〉短角杜父魚(shorthorn sculpin) <400> 7<210> 7 <211> 32 <212> PRT < 213 > shorthorn sculpin <400>
Met Asn Ala Pro Ala Arg Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 15 10 15Met Asn Ala Pro Ala Arg Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 15 10 15
Ala Ala Ala Lys Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Ala 20 25 30Ala Ala Ala Lys Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Ala 20 25 30
<210〉 8 <211> 45 <212> PRT <213〉短角杜父魚(shorthorn sculpin) <400> 8<210〉 8 <211> 45 <212> PRT < 213 > Shorthorn sculpin <400> 8
Met Asn Gly Glu Thr Pro Ala Gin Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15Met Asn Gly Glu Thr Pro Ala Gin Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15
Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala Ala 20 25 30Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala Ala 20 25 30
Ala Lys Ala Ala Ala lie Ala Ala Ala Ala Ala Ser Ala 35 40 45Ala Lys Ala Ala Ala lie Ala Ala Ala Ala Ala Ser Ala 35 40 45
<210> 9 <211> 33 <212> PRT <213〉銅色床杜父魚(Grubby sculpin) <400〉 9 4 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰<210> 9 <211> 33 <212> PRT < 213 > 213>Grubby sculpin <400> 9 4 1321567 Patent Application No. 095118228 Revision page Revision period: 98 October 1st
Met Asp Ala Pro Ala lie Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 15 10 15Met Asp Ala Pro Ala lie Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 15 10 15
Ala Ala Ala Lys Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Lys 20 25 30Ala Ala Ala Lys Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Lys 20 25 30
Pro <210> 10 <211> 40 <212〉 PRT <213>銅色床杜父魚 <400> 10Pro <210> 10 <211> 40 <212> PRT <213>Bronze bed Dufy <400>
Met Asp Gly Glu Thr Pro Ala Gin Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15Met Asp Gly Glu Thr Pro Ala Gin Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15
Ala Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala 20 25 30Ala Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala 20 25 30
Ala Ala He Ala Ala Ala Ala Ala 35 40Ala Ala He Ala Ala Ala Ala Ala 35 40
<210〉 11 <211> 39 <212> PRT <213〉北極杜父魚(Arctic sculpin) <400〉 11<210> 11 <211> 39 <212> PRT <213>Arctic sculpin <400> 11
Met Asp Gly Glu Thr Pro Ala Gly Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15Met Asp Gly Glu Thr Pro Ala Gly Lys Ala Ala Arg Leu Ala Ala Ala 15 10 15
Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala Ala 20 25 30Ala Ala Leu Ala Ala Lys Thr Ala Ala Asp Ala Ala Ala Lys Ala Ala 20 25 30
Ala He Ala Ala Ala Ala Ala 35 5 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210〉 12 <211〉 33 <212> PRT <213>北極杜父魚 <400〉 12Ala He Ala Ala Ala Ala Ala 35 5 1321567 Patent Application No. 095118228 Revision Date Amendment Date: October 1st, 1998 <210> 12 <211> 33 <212> PRT <213> Arctic Du Father Fish <400〉 12
Met Asp Ala Pro Ala Arg Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 1 5 10 15Met Asp Ala Pro Ala Arg Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu 1 5 10 15
Ala Ala Ala Asn Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Ala 20 25 30Ala Ala Ala Asn Lys Thr Ala Ala Asp Ala Ala Ala Ala Ala Ala Ala 20 25 30
AlaAla
<210〉 13 <211> 113 <212〉 PRT <213〉大西洋獅子魚(Atlantic snailfish) <300〉 <308> NCBI/AAR22528 <309> 2005-10-19 <313〉 (1)..(113) <400〉 13<210> 13 <211> 113 <212> PRT < 213 > Atlantic Lionfish (Atlantic snailfish) <300 <308> NCBI/AAR22528 <309> 2005-10-19 <313> (1)..(113) <400〉 13
Met Ala Ala Ala Thr Pro Ala Gin Arg Ala Ala Ala Thr Ala Thr Ala 15 10 15Met Ala Ala Ala Thr Pro Ala Gin Arg Ala Ala Ala Thr Ala Thr Ala 15 10 15
Ala Ala Ala Ala Ala Ala Ser Ala Ala Ala Ala Ala Ala Ala Thr Thr 20 25 30Ala Ala Ala Ala Ala Ala Ser Ala Ala Ala Ala Ala Ala Ala Thr Thr 20 25 30
Ala Ser Thr Ala Ala Lys Val Ser Ala Gly Ala Ala Ala Thr Ala Ala 35 40 45Ala Ser Thr Ala Ala Lys Val Ser Ala Gly Ala Ala Ala Thr Ala Ala 35 40 45
Ala Ala Val Val Ala Ala Lys Asn Ala Ala Thr Ala Val Ala Pro Asn 50 55 60 6 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰Ala Ala Val Val Ala Ala Lys Asn Ala Ala Thr Ala Val Ala Pro Asn 50 55 60 6 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998
Thr Gly Ala lie Thr Ala Ala Thr Ala Ala Ser Ala Thr Ala Ala Ala 65 70 75 80Thr Gly Ala lie Thr Ala Ala Thr Ala Ala Ser Ala Thr Ala Ala Ala 65 70 75 80
Ala Ala Lys Ala Ala Gin Ala Thr Ala Asp Ala Ala Ala Thr Lys Ala 85 90 95Ala Ala Lys Ala Ala Gin Ala Thr Ala Asp Ala Ala Ala Thr Lys Ala 85 90 95
Ala Ala Ala Ala Val Thr Ser Lys Ala Ala Ala Ala Ala Leu Ala Ala 100 105 110Ala Ala Ala Ala Val Thr Ser Lys Ala Ala Ala Ala Ala Leu Ala Ala 100 105 110
LeuLeu
<210〉 14 <211> 113 <212> PRT <213〉圓斑獅子魚(Dusky snailfish) <300〉 <308> NCBI/AAR22529 <309> 2005-10-19 <313〉 (1)..(113) <400〉 14<210> 14 <211> 113 <212> PRT < 213 > 213> lionfish (Dusky snailfish) <300><308> NCBI/AAR22529 <309> 2005-10-19 <313 〉 (1)..(113) <400〉 14
Met Ala Ala Ala Thr Pro Ala Gin Arg Ala Ala Ala Thr Ala Thr Ala 15 10 15Met Ala Ala Ala Thr Pro Ala Gin Arg Ala Ala Ala Thr Ala Thr Ala 15 10 15
Ala Ala Ala Ala Ala Ala Ser Ala Ala Ala Ala Ala Ala Ala Thr Thr 20 25 30Ala Ala Ala Ala Ala Ala Ser Ala Ala Ala Ala Ala Ala Ala Thr Thr 20 25 30
Ala Ser Thr Ala Ala Lys Val Ser Ala Gly Ala Ala Ala Thr Ala Ala 35 40 45 iAla Ser Thr Ala Ala Lys Val Ser Ala Gly Ala Ala Ala Thr Ala Ala 35 40 45 i
Ala Ala Val Val Ala Ala Lys Asn Ala Ala Thr Ala Val Ala Pro Asn 50 55 60Ala Ala Val Val Ala Ala Lys Asn Ala Ala Thr Ala Val Ala Pro Asn 50 55 60
Thr Gly Ala lie Thr Ala Ala Thr Ala Ala Ser Ala Thr Ala Ala Ala 65 70 75 80Thr Gly Ala lie Thr Ala Ala Thr Ala Ala Ser Ala Thr Ala Ala Ala 65 70 75 80
Ala Ala Lys Ala Ala Gin Ala Thr Ala Asp Ala Ala Ala Thr Lys Ala 85 90 95 7 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰Ala Ala Lys Ala Ala Gin Ala Thr Ala Asp Ala Ala Ala Thr Lys Ala 85 90 95 7 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998
Ala Ala Ala Ala Val Thr Ser Lys Ala Ala Ala Ala Leu Pro Arg Arg 100 105 110Ala Ala Ala Ala Val Thr Ser Lys Ala Ala Ala Ala Leu Pro Arg Arg 100 105 110
Leu <210> 15 <211> 38 <212〉 PRT <213〉寒冬比目魚 <400> 15Leu <210> 15 <211> 38 <212> PRT <213>> chilly halibut <400>
Met Asp Ala Pro Ala Arg Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15Met Asp Ala Pro Ala Arg Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15
Ala Ala Ala Glu Ala Thr Lys Ala Ala Ala Ala Lys Ala Ala Ala Ala 20 25 30Ala Ala Ala Glu Ala Thr Lys Ala Ala Ala Ala Lys Ala Ala Ala Ala 20 25 30
Thr Lys Ala Ala Ala His 35 <210〉 16 <211> 39 <212> PRT <213〉寒冬比目魚 <400〉 16Thr Lys Ala Ala Ala His 35 <210> 16 <211> 39 <212> PRT <213> Winter Flounder <400> 16
Met Asp Ala Pro Ala Lys Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15Met Asp Ala Pro Ala Lys Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15
Ala Ala Ala Glu Ala Thr Ala Ala Ala Ala Ala Lys Ala Ala Ala Ala 20 25 30Ala Ala Ala Glu Ala Thr Ala Ala Ala Ala Ala Lys Ala Ala Ala Ala 20 25 30
Thr Lys Ala Gly Ala Ala Arg 8 35 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210〉 17 <211> 39Thr Lys Ala Gly Ala Ala Arg 8 35 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998 <210> 17 <211> 39
<212> PRT <213>寒冬比目魚 <300> <301> W.K Low et al. <303> J. Biol. Chem. <304〉 276 <305> 15 <306〉 11582-11589 <307〉 2001-04-13 <400> 17<212> PRT <213> Winter Flounder <300><301> WK Low et al. <303> J. Biol. Chem. <304> 276 <305> 15 <306> 11582- 11589 <307〉 2001-04-13 <400> 17
Met Asp Ala Pro Ala Lys Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15Met Asp Ala Pro Ala Lys Ala Ala Ala Ala Thr Ala Ala Ala Ala Lys 15 10 15
Ala Ala Ala Glu Ala Thr Ala Ala Ala Ala Ala Lys Ala Ala Ala Asp 20 25 30Ala Ala Ala Glu Ala Thr Ala Ala Ala Ala Ala Lys Ala Ala Ala Asp 20 25 30
Thr Lys Ala Lys Ala Ala Arg 35 <210> 18 <211> 92 <212> PRT <213〉短角杜父魚 <400> 18Thr Lys Ala Lys Ala Ala Arg 35 <210> 18 <211> 92 <212> PRT <213> Short-horned Dugong <400> 18
Met Ala Ala Ala Ala Lys Ala Ala Glu Ala Ala Ala Met Ala Ala Ala 1 5 10 15Met Ala Ala Ala Ala Lys Ala Ala Glu Ala Ala Ala Met Ala Ala Ala 1 5 10 15
Asn Ala Ala Glu Ala Ala Ala Thr Lys Ala Ala Asp Ala Ala Ala Ser 20 25 30Asn Ala Ala Glu Ala Ala Ala Thr Lys Ala Ala Asp Ala Ala Ala Ser 20 25 30
Ala Ala Ala Ala Ala lie Ala Ala lie Ala Glu Ala Ala Glu Ala Ala 35 40 45 9 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰Ala Ala Ala Ala Ala lie Ala Ala lie Ala Glu Ala Ala Glu Ala Ala 35 40 45 9 1321567 Revision No. 095118228 Patent Application Manual Revision Date: October 1st, 1998
Glu Ala Ala Ala Thr Lys Ser Ala Asn Val Ala Ala Ala Ala Ala Ala 50 55 60Glu Ala Ala Ala Thr Lys Ser Ala Asn Val Ala Ala Ala Ala Ala Ala 50 55 60
Thr Ser Ala Ala Ala Ala Ala Lys Ala Thr Ala Asn Ala Ala Ala Ala 65 70 75 80Thr Ser Ala Ala Ala Ala Ala Lys Ala Thr Ala Asn Ala Ala Ala Ala 65 70 75 80
Ala Ser Ala Ala Ala Ala Ala Ala Ala Ala Val Ala 85 90Ala Ser Ala Ala Ala Ala Ala Ala Ala Ala Val Ala 85 90
<210> 19 <211> 42 <212> PRT <213> 長角杜父魚(Longhorn sculpin) <300〉 <301> W.K Low et al. <303> J. Biol. Chera. <304> 276 <305> 15 <306〉 11582-11589 <307〉 2001-04-13 <400> 19<210> 19 <211> 42 <212> PRT <213> Longhorn sculpin <300><301> WK Low et al. <303> J. Biol. Chera <304> 276 <305> 15 <306> 11582-11589 <307> 2001-04-13 <400> 19
Met Asp Ala Pro Ala Lys Ala Ala Ala Lys Thr Ala Ala Asp Ala Lys 15 10 15Met Asp Ala Pro Ala Lys Ala Ala Ala Lys Thr Ala Ala Asp Ala Lys 15 10 15
Ala Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu Ala Ala Ala Asn Lys 20 25 30Ala Ala Ala Ala Lys Thr Ala Ala Asp Ala Leu Ala Ala Ala Asn Lys 20 25 30
Thr Ala Ala Ala Ala Lys Ala Ala Ala Lys 35 40 <210> 20 <211> 56 <212> PRT <213〉ΛΧ 的 10 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <220〉 <223〉抗凍蛋白類似物1 <400〉 20Thr Ala Ala Ala Ala Lys Ala Ala Ala Lys 35 40 <210> 20 <211> 56 <212> PRT <213>ΛΧ 10 1321567 No. 095118228 Patent Application Manual Amendment Page Amendment Date: 98 years 10 1曰<220> <223>Antifreeze Protein Analog 1 <400> 20
Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala 15 10 15Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala 15 10 15
Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Lys Ala 20 25 30Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Lys Ala 20 25 30
Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr 35 40 45Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr 35 40 45
Ala Arg His His His His His His 50 55 <210〉 21 <211> 56 <212> PRT <213〉人工的 <220> <223〉抗凍蛋白類似物Γ <400〉 21Ala Arg His His His His His His 50 50 <210> 21 <211> 56 <212> PRT < 213 > 213 ><220><223> 223 "Antifreeze Protein Analog Γ <400>
Asp Pro Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala 15 10 15Asp Pro Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu Thr Ala 15 10 15
Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Lys Ala 20 25 30Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Lys Ala 20 25 30
Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr 35 40 45Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala Ala Thr 35 40 45
Ala Arg His His His His His His 50 55 11 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210〉 22 <211> 36 <212> DNA <213〉人工的 <220〉 <223>用於編碼AFP類似物1的DNA序列之PCR擴增的合成引子 <220> <221〉限制位址 <222〉 (7)..(12) <223〉被BamHI所辨識 <400〉 22 caatcaggat ccgatacagc gtcagatgcg gcagcg 36 <210〉 23 <211〉 41 <212> DNA <213〉人工的 <220〉 <223〉用於編碼AFP類似物11的DNA序列之PCR擴增的合成引子 <220〉 <221>限制位址 <222〉 (7)..(12) <223>被3卩111所辨識 <400〉 23 aatttagcat gcaagatcct gatacagcgt cagatgcggc a 41 <210〉 24 <211> 46 <212> DNA <213> ΛΧ的 12 1321567 修正日期:98年10月1曰 第095118228號專利申請案說明書修正頁 <220> <223〉用於驅AFP類似物1或1.的序列之卿擴增的合成引子 <220> <221〉限制位址 <222〉 (7)..(12) <223〉被Sail所辨識 <220> <221〉限制位址 <222〉 (11)..(16) <223>被5口61所辨識 <400> 24 atttaggtcg actagttatt agtggtggtg gtggtggtgt cttgcg 46 <210> 25 <211〉 96 <212> DNA <213>人工的 <220> <223〉用於編碼AFP類似物1或Γ的DNA序列之PCR擴增的合成引子 <400> 25 gatcctgata cagcgtcaga tgcggcagcg gctgcggctc ttactgcagc taacgcaaaa 60 gccgcagctg aactgacggc tgccaatgcg aaggcg 96 <210> 26 <211> 96 <212> DNA <213> ΛΧ的 <220> <223> 用於編 <400> 26 ,AFP類似物1或Γ的DNA序列之PCR擴增的合成引子 13 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 ttagtggtgg tggtggtggt gtcttgcggt ggcagcggct gcagcagcag cgttagctgc 60 tgtgagctcg gccgccgcct tcgcattggc agccgt 96 <210〉 27 <211> 195 <212> DNA <213〉ΛΧ的 <220> <223>實質上對應於編碼AFP類似物1的DNA序列之PCR產物 <220> <221〉限制位址 <222〉 (7)..(12) <223〉被BamHI所辨識 <220〉 <221〉限制位址 <222〉 (180)..(185) <223>被3061所辨識 <220〉 <221〉限制位址 <222〉 (184)..(189) <223〉被Sail所辨識 <400> 27 caatcaggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagacacc accaccacca ccactaataa 180 ctagtcgacc taaat 195Ala Arg His His His His His His His 50 50 11 1321567 Patent Application No. 095118228 Revision Date Revision Date: October 1st, 1998<210> 22 <211> 36 <212> DNA <213><220><223> Synthetic primer for PCR amplification of DNA sequence encoding AFP analog 1 <220><221>2 restriction site <222> (7)..(12) <;223>Recognized by BamHI<400> 22 caatcaggat ccgatacagc gtcagatgcg gcagcg 36 <210> 23 <211> 41 <212> DNA <213>manual <220><223> for encoding AFP The synthetic primer for PCR amplification of the DNA sequence of the analog 11 <220> <221> restriction address <222> (7)..(12) <223> is recognized by 3卩111<400〉 23 aatttagcat gcaagatcct gatacagcgt cagatgcggc a 41 <210> 24 <211> 46 <212> DNA <213> ΛΧ12 1321567 Revision Date: October 01, pp. 095118228 Patent Application Specification Revision Page <220><223>>221>Restriction of synthetic primers for the amplification of the sequence of AFP analog 1 or 1. <220><221> Address <222> (7)..(12) <223> is recognized by Sail<220><221>RestrictedAddress<222> (11)..(16) <223> The port 61 recognizes <400> 24 atttaggtcg actagttatt agtggtggtg gtggtggtgt cttgcg 46 <210> 25 <211> 96 <212> DNA <213>manual <220><223> Synthetic primer for PCR amplification of 1 or Γ DNA sequence <400> 25 gatcctgata cagcgtcaga tgcggcagcg gctgcggctc ttactgcagc taacgcaaaa 60 gccgcagctg aactgacggc tgccaatgcg aaggcg 96 <210> 26 <211> 96 <212> DNA <213><220><223> Synthetic primer for PCR amplification of DNA sequence of <400> 26, AFP analog 1 or Γ13 13 567 567 Revision No. 095118228 Patent Application Revision Date: 98 years October 1曰ttagtggtgg tggtggtggt gtcttgcggt ggcagcggct gcagcagcag cgttagctgc 60 tgtgagctcg gccgccgcct tcgcattggc agccgt 96 <210> 27 <211> 195 <212> DNA <213>ΛΧ<220><223> substantially corresponds to coding AFP class The PCR product of the DNA sequence of the like 1 <220><221> restriction address <222> (7)..(12) <223> is recognized by BamHI <220> <221> Address <222> (180)..(185) <223> is recognized by 3061<220> <221>Restricted Address<222> (184)..(189) <223> is Sail Recognized <400> 27 caatcaggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagacacc accaccacca ccactaataa 180 ctagtcgacc taaat 195
<210> 28 <211> 203 <212> DNA 14 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 <213> ΛΧ的 <220〉 <223〉實質上對應於編碼AFP類似物1'的DNA序列之PCR產物 <220〉 <221〉限制位址 <222> (7)..(12) <223>被SphI所辨識 <220〉 <221>限制位址 <222> (188)..(193) <223>被Spel所辨識 <220> <221〉限制位址 <222〉 (192)..(197) <223〉被Sail所辨識 <400〉 28 60 120 180 203 aatttagcat gcaagatcct gatacagcgt cagatgcggc agcggctgcg gctcttactg cagctaacgc aaaagccgca gctgaactga cggctgccaa tgcgaaggcg gcggccgagc tcacagcagc taacgctgct gctgcagccg ctgccaccgc aagacaccac caccaccacc actaataact agtcgaccta aat <210〉 29 <211> 38 <212> DNA <213〉人工的 <220> <223>用於編碼AFP類似物1A,2A或3A的DNA序列之PCR擴增的合成弓丨子 <220〉 <221〉限制位址 <222〉 (7)..(12) 15 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰 <223〉被Ndel所辨識 <400〉 29 gatatacata tgaataagaa aatggggaaa attgttgc 38 <210> 30 <211> 32 <212> DNA <213〉人工的 <220> <223〉用於編碼AFP類似物2A或3A的DNA序列之PCR擴增的合成引子 <220〉 <221〉限制位址 <222〉 (7)..(12) <223〉被ΚρηΙ所辨識 <400〉 30 caatatggta ccgatacagc gtcagatgcg gc 32 <210> 31 <211> 32 <212〉 DNA <213>人工的 <220〉 <223>用於編碼AFP類似物3A的DNA序列之PCR擴增的合成引子 <220> <221〉限制位址 <222〉 (7)..(12) <223〉被BamHI所辨識 <400> 31 catattggat cctgatacag cgtcagatgc gg 32 16 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210> 32 <211> 31 <212> DNA <213>人工的 <220> <223>用於編碼AFP類似物2A或3A的DNA序列之PCR擴增的合成引子 <220〉 <221〉限制位址 <222〉 (7)..(12) <223>被ΚρηΙ所辨識 <400〉 32 tagataggta cctcttgcgg tggcagcggc t 31 <210> 33 <211> 33 <212> DNA <213〉AX的 <220〉 <223>用於編碼AFP類似物3A的DNA序列之PCR擴增的合成引子 <220〉 <221>限制位址 <222〉 (7)..(12) <223>被8&础1所辨識 <400> 33 ttacttggat cccctcttgc ggtggcagcg get 33 <210> 34 <211> 42 <212> DNA <213> ΛΧ的 17 1321567 第095118228號專利中§#案說書修正頁 修正日期:98年10月1日 <220> <223>用於編fiiAFP類似物1A,2八或3八的序列之取擴增的合成引子 <220> <221〉限制位址 <222> (7)..(12) <223〉被Sail所辨識 <220> <221>限制位址 <222> (11)..(16) <223>被3?61所辨識 <400〉 34 tagatagtcg actagttatt agtggtggtg gtggtggtgt ct 42 <210> 35 <211> 174 <212〉 DNA <213> 人工的 <220〉 <223> 編碼AFP類似物1A的DNA序列 <400〉 35 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagacacc accaccacca ccac 174 <210> 36 <211> 324 <212> DNA <213〉AX的 <220> <223>編碼AFP類似物2A的DNA序列 18 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <400〉 36 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagaggta ccgatacagc gtcagatgcg 180 gcagcggctg cggctcttac tgcagctaac gcaaaagccg cagctgaact gacggctgcc 240 aatgcgaagg cggcggccga gctcacagca gctaacgctg ctgctgcagc cgctgccacc 300 gcaagacacc accaccacca ccac 324 <210> 37 <211> 477 <212> DNA <213〉ΛΧ的 <220> <223>編碼AFP類似物3A的DNA序列 <400> 37 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagaggta ccgatacagc gtcagatgcg 180 gcagcggctg cggctcttac tgcagctaac gcaaaagccg cagctgaact gacggctgcc 240 aatgcgaagg cggcggccga gctcacagca gctaacgctg ctgctgcagc cgctgccacc 300 gcaagagggg atcctgatac agcgtcagat gcggcagcgg ctgcggctct tactgcagct 360 aacgcaaaag ccgcagctga actgacggct gccaatgcga aggcggcggc cgagctcaca 420 gcagctaacg ctgctgctgc agccgctgcc accgcaagac accaccacca ccaccac 477 <210> 38 <211> 58 <212> PRT <213> ΛΧ的 <220〉 <223〉重組型抗凍蛋白類似物1A的胺基酸序列 19 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <400〉 38<210> 28 <211> 203 <212> DNA 14 1321567 Patent Application No. 095118228 Revision page revision period: October 1st, 1998<213>&<220<223> The PCR product substantially corresponding to the DNA sequence encoding 1' of the AFP analog <220> <221> restriction site <222> (7)..(12) <223> is recognized by SphI <220 〉 <221>Restricted Address<222> (188)..(193) <223> Recognized by Spel<220><221>RestrictedAddress<222> (192)..(197 ) < 223> are & lt the recognized Sail; 400> 28 60 120 180 203 aatttagcat gcaagatcct gatacagcgt cagatgcggc agcggctgcg gctcttactg cagctaacgc aaaagccgca gctgaactga cggctgccaa tgcgaaggcg gcggccgagc tcacagcagc taacgctgct gctgcagccg ctgccaccgc aagacaccac caccaccacc actaataact agtcgaccta aat < 210> 29 < 211 > 38 <212> DNA < 213 > artificial <220><223> Synthetic Bow Tweezers for PCR amplification of DNA sequences encoding AFP analogs 1A, 2A or 3A <220> Address <222> (7)..(12) 15 1321567第09511822 Revision No. 8 Patent Application Revision Amendment: October 1st, 1998 <223> Recognized by Ndel <400> 29 gatatacata tgaataagaa aatggggaaa attgttgc 38 <210> 30 <211> 32 <212> DNA <213>Artifical <220><223>>220>Recombinant primer for PCR amplification of DNA sequence encoding AFP analog 2A or 3A <220> <221>restricted address<222> 7)..(12) <223> is recognized by ΚρηΙ<400> 30 caatatggta ccgatacagc gtcagatgcg gc 32 <210> 31 <211> 32 <212> DNA <213> Artificial <220><223> Synthetic primer for PCR amplification of DNA sequence encoding AFP analog 3A <220><221>restrictedaddress<222> (7)..(12) <223> by BamHI Recognized <400> 31 catattggat cctgatacag cgtcagatgc gg 32 16 1321567 Patent Application No. 095118228 Revision Date: October 1st, 曰 <210> 32 <211> 31 <212> DNA <213> Artificial <220><223> Synthetic primer for PCR amplification of DNA sequence encoding AFP analog 2A or 3A Lt220> <221>Restricted address<222> (7)..(12) <223> is recognized by ΚρηΙ<400> 32 tagataggta cctcttgcgg tggcagcggc t 31 <210> 33 <211> 33 <212> DNA <213> AX<220><223> Synthetic primer for PCR amplification of DNA sequence encoding AFP analog 3A <220><221> restriction site< 222> (7)..(12) <223> is recognized by 8&1<400> 33 ttacttggat cccctcttgc ggtggcagcg get 33 <210> 34 <211> 42 <212> DNA <213> 1717 1321567 No. 095118228 Patent §# Case Correction Page Revision Date: October 1, 1998 <220><223> For the compilation of the sequence of fiiAFP analogues 1A, 2 or 38 Increased Synthetic Primer <220><221>RestrictedAddress<222> (7)..(12) <223>Recognized by Sail<220><221>RestrictedAddress<222> (11)..(16) <223> is recognized by 3?61<400> 34 tagatagtcg actagttatt agtggtggtg gtggtggtgt ct 42 <210> 35 <211> 174 <212> DNA <213>≪ 220> < 223 > encoding AFP analogs 1A is the DNA sequence < 400> 35 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagacacc accaccacca ccac 174 < 210 > 36 < 211 > 324 <212> DNA <213>AX<220><223> DNA sequence encoding AFP analog 2A 18 1321567 Patent No. 095118228 Patent application revision page Revision date: October 1st, 1998 ; 400> 36 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagaggta ccgatacagc gtcagatgcg 180 gcagcggctg cggctcttac tgcagctaac gcaaaagccg cagctgaact gacggctgcc 240 aatgcgaagg cggcggccga gctcacagca gctaacgctg ctgctgcagc cgctgccacc 300 gcaagacacc accaccacca ccac 324 < 210 > 37 < 211 > 477 <212> DNA <213><220><223> DNA sequence encoding AFP analog 3A ≪ 400 > 37 gccgagggat ccgatacagc gtcagatgcg gcagcggctg cggctcttac tgcagctaac 60 gcaaaagccg cagctgaact gacggctgcc aatgcgaagg cggcggccga gctcacagca 120 gctaacgctg ctgctgcagc cgctgccacc gcaagaggta ccgatacagc gtcagatgcg 180 gcagcggctg cggctcttac tgcagctaac gcaaaagccg cagctgaact gacggctgcc 240 aatgcgaagg cggcggccga gctcacagca gctaacgctg ctgctgcagc cgctgccacc 300 gcaagagggg atcctgatac agcgtcagat gcggcagcgg ctgcggctct tactgcagct 360 aacgcaaaag ccgcagctga actgacggct Gccaatgcga aggcggcggc cgagctcaca 420 gcagctaacg ctgctgctgc agccgctgcc accgcaagac accaccacca ccaccac 477 <210> 38 <211> 58 <212> PRT <213>ΛΧ<220><223> Recombinant antifreeze protein analog 1A amine Base acid sequence 19 1321567 Revision No. 095118228 Patent Application Revision Date: October 1st, 1998 <400> 38
Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 1 5 10 15Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 1 5 10 15
Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 25 30Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 25 30
Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45
Ala Thr Ala Arg His His His His His His 50 55 <210> 39 <211> 108 <212〉 PRT <213〉人工的 <220〉 <223〉重組型抗凍蛋白類似物2A的胺基酸序列 <400〉 39Ala Thr Ala Arg His His His His His His 5050 <210> 39 <211> 108 <212> PRT < 213 > 213 ><220< 223 > 223 > Recombinant Antifreeze Protein Analog 2A Amino acid sequence <400> 39
Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 15 10 15Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 15 10 15
Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 . 25 30Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 . 25 30
Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45
Ala Thr Ala Arg Gly Thr Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala 50 55 60Ala Thr Ala Arg Gly Thr Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala 50 55 60
Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala 65 70 75 80Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala 65 70 75 80
Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala 85 90 95 20 1321567 第095118228號專利申請案說明書修正頁 修正曰期:98年10月1曰Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala 85 90 95 20 1321567 Patent Revision No. 095118228 Revision Date: October 1st, 1998
Ala Ala Ala Thr Ala Arg His His His His His His 100 105 <210> 40 <211> 159 <212〉PRT <213>人工的 <220〉 <223〉重組型抗凍蛋白類似物3A的胺基酸序列 <400> 40Ala Ala Ala Thr Ala Arg His His His His His His 100 105 <210> 40 <211> 159 <212>PRT <213> Artificial <220><223> Recombinant antifreeze protein analog Amino acid sequence of 3A <400> 40
Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 15 10 15Ala Glu Gly Ser Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala Ala Leu 15 10 15
Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 25 30Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 20 25 30
Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala Ala Ala 35 40 45
Ala Thr Ala Arg Gly Thr Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala 50 55 60Ala Thr Ala Arg Gly Thr Asp Thr Ala Ser Asp Ala Ala Ala Ala Ala 50 55 60
Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala 65 70 75 80Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala 65 70 75 80
Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala 85 90 95Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala Ala Ala Ala 85 90 95
Ala Ala Ala Thr Ala Arg Gly Asp Pro Asp Thr Ala Ser Asp Ala Ala 100 105 110Ala Ala Ala Thr Ala Arg Gly Asp Pro Asp Thr Ala Ser Asp Ala Ala 100 105 110
Ala Ala Ala Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu 115 120 125Ala Ala Ala Ala Leu Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu 115 120 125
Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 130 135 140Thr Ala Ala Asn Ala Lys Ala Ala Ala Glu Leu Thr Ala Ala Asn Ala 130 135 140
Ala Ala Ala Ala Ala Ala Thr Ala Arg His His His His His His 145 150 155 21 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <210> 41 <211> 42 <212> DNA <213>人工的 <220〉 <223〉用於包含一個a 1 eE訊息胜肽編碼序列的DNA序列之PCR擴增的合成引子 <220> <221〉限制位址 <222> (7)..(12) <223〉被EcoRI所辨識 <400〉 41 tagactgaat tcgtatattt cccaatagct aaaaaggttt cc 42 <210〉 42 <211> 54 <212> DNA <213〉AX的 <220> <223>用於包含一個aleE訊息胜肽編碼序列的DNA序列之PCR擴增的合成弓丨子 <220> <221〉限制位址 <222> (7)..(12) <223>被3?61所辨識 <220> <221〉P艮制位址 <222〉 (13)..(18) <223>被Xhol所辨識 <220> <221>限制位址 <222> (16)..(21) 22 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年 <223〉 被SacI所辨識 <220> <221> 限制位址 <222〉 (23)..(28) <223> 被SphI所辨識 <220> <221> 限制位址 <222> (30)..(35) <223> 被BaraHI所辨識 <400> 42 taaatcacta gtctcgagct cagcatgctg gatccctcgg ctgcttgtgc gate <210〉 43 <211> 244 <212〉 DNA <213> 人工的 <220〉 <223> 攜帶有一個aleE訊息胜肽編碼序列以及SD序列的PCR產物 <220〉 <221> 限制位址 <222> (7)..(12) <223> 被EcoRI所辨識 <220> <221> SD序列(Shine-Dalgarno sequence) <222> (108)..(113) <220> <221> 訊息胜肽 <222> (123)..(203) 54 23 <220> 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <221> 限制位址 <222〉 (210)..(215) <223> 被BamHI所辨識 <220〉 <221> 限制位址 <222> (217)..(222) <223> 被SphI戶斤辨識 <220〉 <221> 限制位址 <222> (224)..(229) <223> 被SacI所辨識 <220〉 <221> 限制位址 <222> (227)..(232) <223> 被Xhol所辨識 <220> <221〉 限制位址 <222〉 (233)..(238) <223〉 被Spel所辨識 <400> 43 tagactgaat tcgtatattt cccaatagct aaaaaggttt cccaatacca aaagagttaa 60 aattttgtta attttagatt accagctgcg caggttggaa cattttgagg aggtataacc 120 atatgaataa gaaaatgggg aaaattgttg ccggaacagc actaattata tcagtagcat 180 ttagttcatc gatcgcacaa gcagccgagg gatccagcat gctgagctcg agactagtga 240 ttta 244 <210> 44 <211> 10 <212> PRT <213〉AX 的 24 1321567 第095118228號專利申請案說明書修正頁 修正日期:98年10月1曰 <220> <223> 6X-His tag <400〉 44Ala Ala Ala Ala Ala Ala Thr Ala Arg His His His His His His 145 150 155 21 1321567 Patent No. 095118228 Patent Revision Revision Date: October 1st, 1998 <210> 41 <211> 42 <212> DNA <213> Artificial <220><223>>223>Synthesis primer for PCR amplification of DNA sequence containing an a1eE message peptide coding sequence<220><221><222> (7)..(12) <223> is recognized by EcoRI<400> 41 tagactgaat tcgtatattt cccaatagct aaaaaggttt cc 42 <210> 42 <211> 54 <212> DNA <213><220><223> of AX for PCR amplification of a DNA sequence comprising an aleE message peptide coding sequence <220><221> restriction address <222> (7) ..(12) <223> is recognized by 3?61<220><221>P mandatory address <222> (13)..(18) <223> is recognized by Xhol<220><221>RestrictedAddress<222> (16)..(21) 22 1321567 Patent Application No. 095118228 Revision Date Revision Date: 98 years <223> Distinguished by SacI <220><221> Restricted Address <222> (23)..(28) <223> Recognized by SphI <220><221> Restricted Address <222> (30). (35) <223> Recognized by BaraHI <400> 42 taaatcacta gtctcgagct cagcatgctg gatccctcgg ctgcttgtgc gate <210> 43 <211> 244 <212> DNA <213> Artificial <220>223> PCR product carrying an aleE message peptide coding sequence and SD sequence <220> <221> restriction address <222> (7)..(12) <223> recognized by EcoRI<220><221> SD sequence (Shine-Dalgarno sequence) <222> (108)..(113) <220><221> Message peptide <222> (123)..(203) 54 23 <220> 1321567 Patent Application No. 095118228 Revision Date Revision Date: October 1st, 1998<221> Restricted Address<222> (210)..(215) <223> by BamHI Identification <220> <221> Restricted Address <222> (217)..(222) <223> Recognized by SphI <220 <221> Restricted Address <222> (224)..(229) <223> Recognized by SacI <220> <221> Restricted Address <222> (227).. (232) <223> Recognized by Xhol<220><221> Restricted Address<222> (233)..(238) <223> Recognized by Spel<400> 43 tagactgaat tcgtatattt cccaatagct aaaaaggttt cccaatacca aaagagttaa 60 aattttgtta attttagatt accagctgcg caggttggaa cattttgagg aggtataacc 120 atatgaataa gaaaatgggg aaaattgttg ccggaacagc actaattata tcagtagcat 180 ttagttcatc gatcgcacaa gcagccgagg gatccagcat gctgagctcg agactagtga 240 ttta 244 < 210 > 44 < 211 > 10 < 212 > PRT < 213> AX of 241,321,567 No. 095118228 Revision date of the patent application specification revision date: October 1st, 1998<220><223> 6X-His tag <400> 44
Met Arg Gly Ser His His His His His His 1 5 10 25Met Arg Gly Ser His His His His His His 1 5 10 25
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