TW202406929A - 多表位構築體 - Google Patents
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- TW202406929A TW202406929A TW112116809A TW112116809A TW202406929A TW 202406929 A TW202406929 A TW 202406929A TW 112116809 A TW112116809 A TW 112116809A TW 112116809 A TW112116809 A TW 112116809A TW 202406929 A TW202406929 A TW 202406929A
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Abstract
本發明屬於疫苗接種治療之領域。更具體言之,本發明係關於包含編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列的多表位構築體。本發明進一步關於用於在個體中治療或預防冠狀病毒(尤其SARS-CoV-2病毒)的組合、多肽、或醫藥組成物。
Description
本發明屬於疫苗接種治療之領域。更具體言之,本發明係關於包含編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列的多表位構築體。本發明進一步關於用於在個體中治療或預防冠狀病毒(尤其SARS-CoV-2病毒)的組合、多肽、或醫藥組成物。
COVID-19大流行之出現對於全世界人口而言係一威脅,因為此感染係高度傳染性的且導致嚴重的疾病及死亡。迄今,全球健康負擔及經濟仍然非常嚴峻。目前,有三種主要的COVD-19疫苗之類型(mRNA疫苗、病毒載體疫苗、及蛋白質次單元疫苗),其中mRNA及載體疫苗已於全球疫苗接種策略中成功使用。mRNA疫苗(莫德納;WO2021154763A1及輝瑞-BioNTech;WO2021188969A2)使用來自SARS-CoV-2(該病毒造成COVID-19)的遺傳訊息並給予吾等之細胞如何製造對於該病毒而言係獨特的無害蛋白質的指引。在病毒載體疫苗(嬌生、阿斯特捷利康、衛星V、克威莎)中,來自SARS-CoV-2的遺傳訊息被置於不同病毒之修改版本中。蛋白質次單元疫苗(Novavax)包括SARS-CoV-2之無害片段(蛋白質)而非完整病毒。
mRNA疫苗因為其等之以下者而代表習用疫苗方法之有前景替代方案:設計之容易性、迅速開發之能力、低成本製造之潛力、安全投予、細胞及體液免疫兩者之誘發、及與基因體DNA的交互作用之缺乏。mRNA疫苗之近期改良起以下作用:增加蛋白質轉譯、調節先天性及適應性免疫原性、及改善遞送。雖然一些傳訊RNA疫苗(諸如輝瑞-BioNTech COVID-19疫苗)具有於分發之前需要極低溫儲存的缺點,其他mRNA疫苗無如此需求。
SARS-CoV-2係β冠狀病毒屬之成員,其造成肺炎。SARS-CoV-2係具有單股RNA的包膜病毒,其屬於冠狀病毒科且可在哺乳動物、鳥類、及人類中導致感染。已定序SARS-CoV-2之完整基因體(Wu等人, 2020)且其大約29.9 kb。其基因體之可得性已開啟了開發對抗此毀滅性疾病的疫苗的機會。對於COVID-19疫苗,迄今所有已核准的mRNA疫苗皆使用基於棘蛋白的方法(莫德納,WO2021154763A1及輝瑞-BioNTech,WO2021188969A2)。基於棘蛋白的疫苗誘發封阻SARS-CoV-2與宿主細胞受體結合並因此中和病毒感染且導致有效的保護性免疫力的抗體。SARS-CoV-2之棘蛋白之令人擔憂的特徵係於該病毒之演化期間其如何隨時間改變。與許多病毒相同,SARS-CoV-2之病毒基因體可突變且於SARS-CoV-2之大流行之期間已描述大量如此新變體。此等突變可改變棘蛋白之生化特性且因此隨著病毒演化迴避或逃脫針對先前的變體產生的中和性抗體之中和能力。因此,此提供研究避免或減少如此新「所關注變體(VOC)」之影響的改良的疫苗設計的機會。
因此,本發明之目標係設計一種基於多個表位的疫苗,其包含基於源自冠狀病毒的棘蛋白以外的結構性及非結構性蛋白質的T細胞表位以提供寬廣的對多種冠狀病毒變體及甚至病毒株的保護性及持久性免疫力(泛冠狀病毒疫苗)。視需要,此多表位疫苗可與一或多個編碼全長棘變體且提供與以上提及的已建立的COVID-19疫苗者類似的中和性抗體反應的構築體組合。
於第一方面,本發明係關於一種多表位構築體,其包含至少五個編碼源自冠狀病毒的胜肽或其功能性變體及/或其片段的核酸序列,其中該等胜肽、其變體、及/或其片段包含與選自包含SEQ ID NO: 1-47的清單的序列具有至少95%序列一致性的胺基酸序列。
於一本發明之以下實施方式中,該等核酸序列以密碼子優化優化。
於一特別實施方式中,本發明提供一種如本文中定義的多表位構築體,其進一步包含一或多個編碼冠狀病毒醣蛋白(尤其SARS-CoV-2棘醣蛋白)或其功能性變體及其片段的核酸序列。
於一特別實施方式中,本發明提供一種組合,其包含該多表位構築體及包含一或多個編碼冠狀病毒醣蛋白(尤其SARS-CoV-2棘醣蛋白)或其功能性變體及其片段的核酸序列的構築體。
於又一進一步實施方式中,本發明提供該多表位構築體或該組合,其中該所編碼的胜肽或其功能性變體及其片段以至少一個選自包含以下者的清單的特別分子連接子分開:可彎曲(flexible)連接子、不可彎曲(rigid)連接子、及/或可切割連接子。
於一進一步方面,本發明提供一種本發明之多表位構築體,其中該構築體包含至少五個與於SEQ ID NO: 48-94中列出的序列具有至少95%序列一致性的核酸序列,尤其RNA分子。
於一進一步方面,本發明提供一種如本文中定義的多表位構築體,其中該至少5個核酸序列選自以下清單之任一者:
a. SEQ ID NO: 55、89、57、53、49、92、70、71、48、74、79、77、87、65、59、88、72、60、81;
b. SEQ ID NO: 55、65、59、76、83、60、94、71、49、74、79、87、88、89、48、58、68、92、51、52、57、85、81、53、67、72、70;
c. 55、65、59、76、83、60、94、71、49、74、79、87、88;
d. SEQ ID NO: 89、48、58、68、92、51、52、57、85、81、53、67、72、70;
e. SEQ ID NO: 60、63、54、49、84、89、71、57、65、91、48、56、66、80、79、67、78、75、59、82;
f. SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61、89、48、65、79、62、57、50、93、84、49、59、64、69、82、56;
g. SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61;
於又另一方面,本發明提供一種多肽,其由該多表位構築體編碼。
於一特別實施方式中,本發明提供一種醫藥組成物,其包含該多表位構築體、該組合、或該多肽、及至少一種醫藥上可接受的劑。
於另一實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其在脂質體或奈米粒子(諸如脂質奈米粒子或聚合奈米粒子,尤其脂質奈米粒子)中調配。
於一進一步方面,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於人類或獸醫醫學。
於又實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於疫苗接種,尤其肌肉內疫苗接種。
於一特別實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於在個體中誘發對抗冠狀病毒(尤其SARS-CoV-2病毒)的免疫反應。
於又另一特別實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於在個體中治療或預防冠狀病毒,尤其SARS-CoV-2病毒。
於一進一步方面,本發明係關於誘發對抗冠狀病毒的免疫反應的方法,其包含:向一個體投予治療有效量的該多表位構築體、該組合、該多肽、或該醫藥組成物。
現將進一步敘述本發明。於以下段落,更詳細地界定本發明之不同方面。如此界定的各方面可與一或多個任何其他方面組合,除非明確指出相反者。尤其,任何被指出係較佳的或有利的特徵可與一或多個任何其他被指出係較佳的或有利的特徵組合。
用於本說明書及所附申請專利範圍中,單數形式「一(「a」和「an」)」及「該」包括複數所指事物,除非前後文另外明確規定。舉例而言,「一種化合物」意味一種化合物或超過一種化合物。
用於本文中,術語「包含(「comprising」、「comprises」、及「comprised of」)與「包括(「including」及「includes」)」或「含有(「containing」及「contains」)」同義且係包容性的或開放式的且不排除另外的未列舉成員、元件、或方法步驟。此術語亦包括「由...組成」及「基本上由...組成」。
用於本文中,當指可測量的值(諸如參數、量、持續時間、等等)時,術語「約」或「大約」意欲包括所明確指出的值之+/-10%或更少,較佳+/-5%或更少,更佳+/- 1%或更少,且又更佳+/-0.1%或更少的變異及距所明確指出的值+/-10%或更少,較佳+/-5%或更少,更佳+/- 1%或更少,且又更佳+/-0.1%或更少的變異,其程度為如此變異對於在所揭露的發明中進行而言係適當的。應了解修飾詞「約」或「大約」所指的值本身亦被具體地且優選地揭露。
於尋找新的泛冠狀病毒疫苗的過程中,本發明之發明人研究了是否可使用基於除了源自冠狀病毒的棘醣蛋白以外的蛋白質之表現的核酸疫苗以誘發對多種冠狀病毒病毒株的寬廣保護性及持久性免疫力。藉由使用生物資訊工具,本發明之發明人挑選了一組保守性胜肽窗以用於進一步表位預測。本發明之發明人無法預期地發現了一組保守性胜肽窗,其等係在宿主中引發特別T細胞之生產且因此引發強力的抗病毒免疫反應的可能的抗原決定位。因此,本發明之發明人設計了一種多表位構築體,其包含編碼至少5個源自冠狀病毒的胜肽窗或其功能性變體及其片段的核酸序列,以用於在個體中治療或預防冠狀病毒(尤其SARS-CoV-2病毒)感染。與該多表位疫苗相連的主要優點係對抗不同病毒蛋白質的寬廣免疫反應之誘發,於病毒演化之期間降低免疫逃脫之風險。
於第一方面,本發明係關於一種多表位構築體,其包含至少五個編碼源自冠狀病毒的胜肽或其功能性變體及/或其片段的核酸序列,其中該等胜肽、其變體、及/或其片段包含與選自包含SEQ ID NO: 1 - 47的清單的序列具有至少95%序列一致性的胺基酸序列。
於本發明之前後文中,術語「構築體」係指一種人工設計的核酸之節段,其可用以將遺傳物質併入目標組織或細胞中。用於本文中,多表位構築體在宿主細胞細胞質中以感興趣的轉錄本的形式遞送,其中表現產生將位於膜內、被分泌、或位於細胞內的經轉譯蛋白質。應了解經轉譯蛋白質可係一或多種源自冠狀病毒的免疫原。
於一些實施方式中,本發明中界定的構築體可係多表位DNA構築體或多表位RNA構築體,尤其多表位傳訊RNA(mRNA)構築體。
於本發明之前後文中,術語「RNA」係關於一種分子,其包含核糖核苷酸殘基且較佳完全或實質上由核糖核苷酸殘基構成。「核糖核苷酸」係關於一種核苷酸,其於β-D-核呋喃糖基之2'-位置具有羥基。尤其,此術語係指單股RNA,但亦可指雙股RNA、經分離RNA,諸如經部分純化RNA、基本上純的RNA、合成RNA、重組生產的RNA、以及與天然存在的RNA差異在於一或多個核苷酸之添加、缺失、取代、及/或改變的經修飾RNA。如此改變可包括將非核苷酸物質添加(諸如)至RNA之末端或內部,例如於該RNA之一或多個核苷酸。RNA分子中的核苷酸亦可包含非標準核苷酸,諸如非天然存在的核苷酸或化學合成的核苷酸或去氧核苷酸。此等經改變RNA可稱為類似物或天然存在的RNA之類似物。
根據本發明,術語「RNA」包括且較佳係關於「mRNA」,其意味「傳訊RNA」且係關於「轉錄本」,其可使用DNA作為模板來生產且編碼胜肽或蛋白質。mRNA典型包含5'非轉譯區(5’-UTR)、蛋白質或胜肽編碼區、及3'非轉譯區(3'-UTR)。該RNA進一步包含3’多(A)尾及/或5’帽類似物。在細胞中及試管內,mRNA之半生期有限。發明所屬技術領域中具有通常知識者會理解到除非另有說明,本申請案中闡明的核酸序列在代表性RNA序列中可敘述「U」,但當序列代表DNA時,「U」會被「T」取代。因此,本文中揭露的且以本文中的特定序列識別號識別的RNA序列之任何者亦意欲揭露與該RNA互補的其對應DNA序列,其中該RNA序列中的各「U」被「T」取代。
為清楚起見,mRNA分子包括任何編碼性RNA分子,其可由真核宿主轉譯成蛋白質。
於一些實施方式中,該RNA可係非複製性RNA(NRM),亦稱為非擴增性RNA。非擴增性mRNA僅具有一個開讀框,其編碼感興趣的抗原蛋白質。細胞所使用的mRNA之總量等於由疫苗遞送的mRNA之量且因此劑量強度限於所遞送的RNA之量。
於一些實施方式中,該RNA可係自擴增性RNA(SAM)。SAM具有兩個開讀框。第一開讀框(與常規mRNA相同)編碼感興趣的抗原蛋白質。第二開讀框編碼RNA依賴性RNA聚合酶(及其輔助蛋白),其在細胞中自複製該mRNA構築體且產生多個自副本。
於一些實施方式中,該RNA可係線性或環狀RNA,較佳係線性,更佳係線性非擴增性RNA。
術語「經修飾mRNA分子」意味含有一或多個經修飾核苷的mRNA分子(稱為「經修飾核酸」),其具有有用的特性,諸如在該mRNA被引入的細胞之先天性免疫反應之實質誘發之缺乏。此等經修飾核酸增強蛋白質生產之效力、核酸之細胞內滯留、及所接觸細胞之生存力,且具有減少的免疫原性。
於一些實施方式中,核酸(例如RNA核酸,諸如mRNA核酸)中的經修飾核鹼基包含1-甲基-假尿苷(m 1 y)、1-乙基-假尿苷(e l \|/)、5-甲氧基-尿苷(mo5U)、5-甲基-胞苷(m5C)、及/或假尿苷(y)。於一些實施方式中,核酸(例如RNA核酸,諸如mRNA核酸)中的經修飾核鹼基包含5-甲氧基甲基尿苷、5-甲基硫基尿苷、1-甲氧基甲基假尿苷、5-甲基胞苷、及/或5-甲氧基胞苷。於一些實施方式中,該聚核糖核苷酸包括以上提及的經修飾核鹼基(包括但不限於化學修飾)之任何者之至少二者(例如2、3、4、或更多者)之組合。
較佳,mRNA係使用DNA模板藉由試管內轉錄生產。於本發明之一個實施方式中,該RNA係藉由試管內轉錄獲得。試管內轉錄方法學對於發明所屬技術領域中具有通常知識者而言係已知的且可包含含有啟動子的經純化線性DNA模板、核糖核苷酸三磷酸、包括二硫蘇糖醇(DTT)及鎂離子的緩衝液系統、亞精胺、及適當的RNA聚合酶,諸如T7 RNA聚合酶。轉錄反應中使用的確切條件取決於特殊應用所需的RNA之量。存在各種各樣可商購的試管內轉錄套組。
於另一實施方式中,本發明亦提供一種多表位DNA構築體,其包含至少五個編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,其中該等胜肽、其變體、及/或其片段包含與選自包含SEQ ID NO: 1-47的清單的序列具有至少95%序列一致性的胺基酸序列;其中在相對應DNA序列中該RNA序列中的各個U被T置換。
於本發明之前後文中,術語「DNA構築體」意欲為一類構築體,其藉由以下者起作用:注射含有編碼該(等)抗原的DNA序列的經基因工程改造的質體,該DNA序列接著被宿主細胞吸收並轉錄及轉譯成所編碼的感興趣的基因(免疫反應係針對該基因尋求)以使得該等細胞直接生產該抗原,因此造成保護性免疫反應。此方法相較於傳統方法提供一些可能的優點,包括B細胞反應及T細胞反應兩者之刺激、改善的疫苗穩定性、任何感染物之不存在、及大規模製造之相對容易性。
如發明所屬技術領域中具有通常知識者所認可的,DNA構築體之類型可包括但不限於細菌質體、噬菌體載體、人工染色體、或F型黏接質體。
於本發明之前後文中,術語「表位」係指一種抗原決定位(例如冠狀病毒之多肽),其能夠誘發免疫反應,尤其細胞免疫反應或體液免疫反應。應將免疫反應理解成免疫系統生產辨識由經感染宿主細胞呈現的抗原或針對抗原的抗體的細胞毒性T細胞及輔助T細胞的能力。表位(其係抗原上的小型位點)與抗原結合性蛋白質之特別抗原結合位置(例如分子細胞受體之可變區)交互作用。可將表位定義成結構性的或功能性的。功能性表位一般係結構性表位之一子集且具有直接促成交互作用之親和力的殘基。表位可係線性的或構形性的,即由非線性胺基酸構成。單一抗原可具有超過一個表位。用於本文中,術語「多表位」係指一系列可能相互重疊的胜肽,其等允許寬廣免疫反應之誘發。此胜肽之系列可能攜帶T細胞表位及B細胞表位。
術語「表位」亦指T細胞及/或B細胞對其反應的抗原上的位點。用於本文中,應了解術語「表位」或「抗原」包括免疫原性蛋白質及免疫原性片段,除非另有說明。「病毒抗原」係指由病毒編碼的抗原。其等包括(但不限於)冠狀病毒(諸如COVID-19)之抗原。
本發明之多表位構築體包含編碼種種冠狀病毒抗原之位點的核酸分子。於本發明之前後文中,應將術語「冠狀病毒抗原」理解成構成由給定冠狀病毒編碼的基因產物之部分的胺基酸之排列。冠狀病毒之基因體配置係如下:5’-前導子-UTR-ORF1a-ORF1b-棘(S)基因-套膜(E)基因-膜(M)基因-核蛋白殼(N)基因-3-UTR-多(A)尾。ORF1a及ORF1b編碼複製酶複合蛋白,其本身切割以形成16個非結構性蛋白質(nsp1-nsp16)。ORF1a編碼nsp1-nsp10,而ORF1b編碼nsp11-nsp16。附屬基因分佈在結構性基因之間且附屬蛋白質之數目及其等之功能基於特定冠狀病毒係獨特的(例如對於SARS-CoV-2病毒而言,存在以下附屬基因:ORF3a、ORF 6、ORF7a、ORF7b、ORF8a、ORF9b、及ORF10)。
於本發明之前後文中,該多表位構築體可包含至少二(諸如2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30)個編碼冠狀病毒胜肽或其功能性變體及其片段的核酸序列。於一特別實施方式中,該多表位構築體包含至少二個編碼冠狀病毒胜肽或其片段的核酸序列。於較佳實施方式中,該多表位構築體包含至少五個編碼冠狀病毒胜肽或其片段的核酸序列。
於一個實施方式中,本文之揭露內容之多表位構築體可包含編碼選自包含以下者的清單的冠狀病毒胜肽或其功能性變體及其片段的核酸序列:E基因、M基因、N基因、ORF3a、ORF6、ORF7a、ORF7b、ORF8a、ORF9b、及ORF10、ORF1a、及/或ORF1b病毒基因體窗。
於一特別實施方式中,ORF1a及ORF1b冠狀病毒胜肽或功能性變體及片段可選自包含以下者的清單:NSP1、NSP2、NSP3、NSP4、NSP5、NSP6、NSP7、NSP8、NSP9、NSP10、NSP11、NSP12、NSP13、NSP14、NSP15、NSP16、或其等之組合。
於一進一步實施方式中,本文之揭露內容之多表位構築體可包含編碼選自包含以下者的清單的冠狀病毒胜肽或其功能性變體及其片段的核酸序列:E、M、N、NSP1、NSP3、NSP4、NSP5、NSP6、NSP8、NSP9、NSP12、NSP13、NSP14、NSP15、NSP16、ORF6、或其等之組合。
於一個實施方式中,冠狀病毒抗原之胺基酸序列之SEQ ID號以及編碼其等的核酸序列之SEQ ID號分別於表1及表2中列出。
應了解本文中敘述的胺基酸序列並非限制性的且可包括序列變異(即與所述序列具有百分比序列一致性)。
於確定二個胺基酸序列之間的序列一致性之程度時,發明所屬技術領域中具有通常知識者可考慮到所謂的「保守性」胺基酸取代,其可一般地敘述成其中一胺基酸殘基被化學結構類似的另一胺基酸殘基置換且其對該多肽之功能、活性、或其他生物特性影響極小或基本上無影響的胺基酸取代。如此保守性取代較佳係其中以下組(a)-(e)內的一個胺基酸被相同組內的另一胺基酸殘基取代的取代:(a)小型脂肪族非極性或微極性殘基:Ala、Ser、Thr、Pro、及Gly;(b)極性帶負電殘基及其等之(不帶電)醯胺:Asp、Asn、Glu、及Gln;(c)極性帶正電殘基:His、Arg、及Lys;(d)大型脂肪族非極性殘基:Met、Leu、Ile、Val、及Cys;及(e)芳香族殘基:Phe、Tyr、及Trp。特佳的保守性取代係以下者:Ala取代成Gly或取代成Ser;Arg取代成Lys;Asn取代成Gln或取代成His;Asp取代成Glu;Cys取代成Ser;Gln取代成Asn;Glu取代成Asp;Gly取代成Ala或取代成Pro;His取代成Asn或取代成Gln;Ile取代成Leu或取代成Val;Leu取代成Ile或取代成Val;Lys取代成Arg、取代成Gln、或取代成Glu;Met取代成Leu、取代成Tyr或取代成Ile;Phe取代成Met、取代成Leu、或取代成Tyr;Ser取代成Thr;Thr取代成Ser;Trp取代成Tyr;Tyr取代成Trp;及/或Phe取代成Val、取代成Ile、或取代成Leu。因此,於一個實施方式中,具有如本文中之前給出的給定百分比序列一致性的序列係相較於參考序列具有一、二、三、或更多個保守性胺基酸取代的序列。
另一方面,由本文之揭露內容之核酸編碼的變體抗原/多肽可含有賦予一些所欲的特性之任何者的胺基酸改變,例如在個體中增強其等之免疫原性、增強其等之表現、及/或改善其等之穩定性或PK/PD特性者。可使用常規致免疫技術製作變體抗原/多肽並酌情分析以確定其等是否具有所欲的特性。
如發明所屬技術領域中具有通常知識者所認可的,蛋白質片段、功能性蛋白質功能域、及同源蛋白質亦被認為落入感興趣的冠狀病毒抗原之範圍內。例如,本文中所提供者係參考蛋白質之任何蛋白質片段(意味相較於參考抗原序列短至少一個胺基酸殘基但其他方面相同的多肽序列),其條件為該片段係免疫原性的且賦予對冠狀病毒的保護性免疫反應。除了與參考蛋白質相同但經截短的變體之外,於一些實施方式中,抗原包括2、3、4、5、6、7、8、9、10、或更多個突變,如於本文中提供或提及的序列之任何者中顯示的。抗原/抗原性多肽之長度範圍可在約4、6、或8個胺基酸至全長蛋白質。
因此,於一特別實施方式中,本文中敘述的胺基酸序列與表1中列舉的SEQ ID至少及/或約90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、或100%一致。
於一個實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,其中該等胜肽、其變體、及/或其片段包含選自包含SEQ ID NO: 1-47的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於一特別實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1、2、6、8、10、12、13、18、23-25、27、30、32、34、40-42、45的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於一進一步實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1、2、4、5、6、8、10-13、18、20、21、23-25、27、29、32、34、36、38、40-42、45、47的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於另一實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1、2、7、9、10、12、13、16、18-20、24、28、31-33、35、37、42、44的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於一特別實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1、2、3、7、9、10、12-20、22、24、26、28、31-33、35、37、39、42-44、46的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於一特別實施方式中,本發明係關於一種多表位構築體,其包含至少二個(諸如至少五個)編碼源自冠狀病毒的胜肽或其功能性變體及其片段的核酸序列,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1、2、10、12、13、18、20、24、32、42的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列。
於
表 3中,列出具有編碼冠狀病毒抗原之胺基酸序列的對應核酸序列(SEQ ID NO: 95-103)的多表位構築體之實例。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 95(構築體2.1)且包含核酸序列:SEQ ID NO: 55、89、57、53、49、92、70、71、48、74、79、77、87、65、59、88、72、60、81或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 96(構築體2)且包含核酸序列:SEQ ID NO: 55、65、59、76、83、60、94、71、49、74、79、87、88、89、48、58、68、92、51、52、57、85、81、53、67、72、70或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 97(構築體2.2.1)且包含核酸序列:SEQ ID NO: 55、65、59、76、83、60、94、71、49、74、79、87、88或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 98(構築體2.2.2)且包含核酸序列:SEQ ID NO: 89、48、58、68、92、51、52、57、85、81、53、67、72、70或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 99(構築體2.3)且包含核酸序列:SEQ ID NO: 60、63、54、49、84、89、71、57、65、91、48、56、66、80、79、67、78、75、59、82或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 100(構築體2.4)且包含核酸序列:SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61、89、48、65、79、62、57、50、93、84、49、59、64、69、82、56。或與其等具有至少90%,諸如至少95%序列一致性
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 101(構築體2.4.1)且包含核酸序列:SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 102(構築體2.4.2)且包含核酸序列:SEQ ID NO: 89、48、65、79、62、57、50、93、84、49、59、64、69、82、56或與其等具有至少90%,諸如至少95%序列一致性。
於一特別實施方式中,本發明係關於一種多表位構築體,其係根據SEQ ID NO: 103(構築體2.5)且包含核酸序列:SEQ ID NO: 89、59、60、49、65、79、71、67、57、48或與其等具有至少90%,諸如至少95%序列一致性。
於
表 4中,列出具有密碼子經優化RNA序列(三個版本)的多表位構築體之實例。因此,很明顯本發明亦關於多表位構築體,其等係根據SEQ ID NO: 104-130或與其等具有至少90%,諸如至少95%序列一致性。
為清楚起見,多表位構築體可指一個核酸(諸如mRNA)分子,其包含該至少5個編碼冠狀病毒之表位的核酸序列,或其可指二或多個核酸(例如mRNA)分子,其中各mRNA分子包含該至少5個編碼冠狀病毒之表位的所選核酸序列之一特別組。換言之,冗長的構築體(例如> 11 K b)並非總被良好地表現且因此在二或多個分開的核酸(例如mRNA)構築體上編碼該等表位可能係較佳的(亦參見實施例)。
於本發明之前後文中,術語「冠狀病毒」包括所有人類冠狀病毒(hCoV),諸如但不限於HCoV-OC43、HCoV-HKU1、HCoV-229E、HCoV-NL63、SARS-CoV-2、SARS-CoV、MERS-CoV。應了解由該多表位構築體編碼的胜肽或其等之片段至少於包括SARS-CoV-2的SARS乙型冠狀病毒亞屬(Sarbecovirus)中係普通的,且因此誘發對抗所有此等類型的冠狀病毒的免疫反應。用於本文中,該多表位構築體亦可用於泛冠狀病毒疫苗之前後文中。
於一特別實施方式中,本發明提供一種組合,其包含該多表位構築體及包含一或多個編碼冠狀病毒醣蛋白(尤其SARS-CoV-2棘醣蛋白)或其功能性變體及其片段的核酸序列的構築體。
或者,本發明亦提供一種構築體,其中編碼冠狀病毒醣蛋白的序列係與編碼源自冠狀病毒的胜肽或其功能性變體及其片段的序列組合,該等胜肽或其功能性變體及其片段包含選自包含SEQ ID NO: 1-47的清單或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列;
於本發明之前後文中,術語「組合」係指至少二分開的多表位構築體,其中一種構築體表現如表1中界定的胜肽或其片段,且至少一其他種多表位構築體表現另外的蛋白質及/或佐劑。應了解該組合可包含複數個不同的多表位設計。
另外的蛋白質之實例可係免疫刺激蛋白、共刺激分子、細胞介素、趨化介素、及/或先天途徑觸發性分子。佐劑可用於保護疫苗免於降解或以增強或延長疫苗免疫原性。
於一特別實施方式中,該組合係指至少二分開的構築體,其中一種構築體係表現如
表 1中界定的胜肽或其片段的多表位構築體,且至少一其他構築體表現冠狀棘醣蛋白。
於本發明之前後文中,術語「棘醣蛋白(S)」意欲係特化的病毒蛋白質三聚體,其起與宿主細胞受體的接附及病毒進入之主要介導子的作用。於一個實施方式中,該組合包含編碼選自包含以下者的清單的冠狀病毒醣蛋白或其功能性變體及其片段的核酸序列:HCoV-OC43、HCoV-HKU1、HCoV-229E、HCoV-NL63、MERS-CoV、SARS-CoV-2、SARS-CoV、或其等之組合,尤其是SARS-CoV-2。應了解冠狀病毒科中的S-蛋白具有胺基酸序列類似性。例如,SARS-CoV及SARS-CoV2之S-蛋白於胺基酸序列共有大約76%一致性。因此,本文中敘述的組合可包含一種構築體,其包含至少一個核酸分子,該核酸分子編碼冠狀病毒醣蛋白(諸如全長-S)或其功能性變體或至少其片段,其涵蓋所有類型的冠狀病毒或至少一個類型的冠狀病毒。
於一些實施方式中,編碼冠狀病毒醣蛋白的構築體包含編碼冠狀病毒抗原變體的核酸序列。抗原變體或其他多肽變體係指其等之胺基酸序列與野生型、天然、或參考序列不同的分子。相較於天然或參考序列,該等抗原/多肽變體可於胺基酸序列內的某些位置具有取代、缺失、及/或插入。一般,變體與野生型、天然、或參考序列具有至少50%一致性。於一些實施方式中,變體與野生型、天然、或參考序列共有至少80%、或至少90%一致性。
於
表 5中,列出編碼SARS-CoV-2棘醣蛋白的構築體之密碼子經優化RNA序列(SEQ ID NO: 131-134)之實例。
於另一特別實施方式中,該組合包含本發明之多表位構築體組合包含一或多個編碼包含如於SEQ ID NO: 131-134中闡明或與其等具有至少90%,諸如至少95%序列一致性的胺基酸序列的SARS-CoV-2棘醣蛋白的核酸序列的構築體。
於另一特別實施方式中,該組合係指至少二分開的構築體,其中一種係表現如表1中界定的胜肽或其片段的多表位構築體,且至少一其他構築體表現至少2種選自包含CD40L、CD70、及caTLR4的群組的免疫刺激蛋白。於一較佳實施方式中,該至少一其他多表位構築體包含編碼CD40L及CD70的核酸分子(即「DiMix」)。於一更佳實施方式中,該至少一其他構築體可另外包含編碼caTLR4的核酸分子,產生所謂的「TriMix」。
於本發明通篇,術語「TriMix」代表編碼CD40L、CD70、及caTRLA4免疫刺激蛋白的mRNA分子之混合物。
於一進一步較佳實施方式中,冠狀病毒醣蛋白及TriMix之特別組合係用於改善編碼如
表 1中界定的冠狀病毒表位的構築體之免疫刺激功效。
於一特別實施方式中,本發明之組合包含至少二分開的構築體,其中一種係表現如表1中界定的胜肽或其片段的多表位構築體,且至少一其他構築體表現複數個預界定的另外的蛋白質,尤其冠狀病毒醣蛋白或免疫刺激蛋白,諸如TriMix。
於一特別實施方式中,本發明亦可提供一種構築體,其表現如表1中界定的胜肽或其片段,且表現一或複數個預界定的另外的蛋白質,尤其冠狀病毒醣蛋白或免疫刺激蛋白,諸如TriMix。
於本發明之前後文中,應了解另外的蛋白質及/或佐劑可由相同的另外的構築體編碼;或由複數個分開的構築體編碼。
於又一進一步實施方式中,本發明提供該多表位構築體或該組合,其中該所編碼的胜肽以至少一個選自包含以下者的清單的特別分子連接子分開:可彎曲連接子、不可彎曲連接子、及/或可切割連接子。
於又另一方面,本發明提供一種由該多表位構築體編碼的多肽。
於一些實施方式中,該多表位構築體編碼超過一種多肽,稱為融合蛋白質。於一些實施方式中,該構築體進一步編碼位於該融合蛋白質之至少一個或各個功能域之間的連接子。連接子於以下者扮演極重要的角色:將表位剪切在一起及產生延伸型構形(可彎曲性)、蛋白質摺疊、及功能性功能域之分開,且因此使蛋白質結構更穩定。可彎曲及不可彎曲連接子將功能性功能域共價連接在一起以於整個活體內程序中以一個分子的形式起作用並因此不被切割。於一些實施方式中,該可彎曲連接子選自包含Gly、Ser、Thr、Lys、Glu、Thr、Ala、或其等之組合的群組。尤其,實例可係Gly及Ser殘基之延伸片段(「GS
n」連接子),其中n指示此GS連接子之長度。最廣泛使用的可彎曲連接子之實例具有(Gly-Gly-Gly-Gly-Ser)
n、GGS、GGSG、G之序列。其他實例可係包含另外的胺基酸以改善可溶性及可彎曲性的GS連接子。數個其他類型的可彎曲連接子包括KESGSVSSEQLAQFRSLD(SEQ ID NO: 135)及EGKSSGSGSESKST(SEQ ID NO: 136)。於一些實施方式中,該不可彎曲連接子可係例如具有(EAAAK)
n的序列的形成α螺旋的連接子,其被頻繁地應用於許多重組融合蛋白質之構築。另一類型的不可彎曲連接子具有富Pro序列(XP)
n,其中X指任何胺基酸,較佳Ala、Lys、或Glu。不可彎曲連接子之實例可係Glu及Pro殘基之延伸片段(「GP
n」連接子),其中n指示此GP連接子之長度,尤其GPG、GPPPG、GPGPG、GP8G、或PAPAP、PA。
另一方面,該連接子可係活體內可切割連接子以活體內釋放自由的功能性功能域。此類型的連接子可降低立體阻礙、改善生物活性、或於連接子切割之後達到重組融合蛋白質之個別功能域之獨立作用/代謝。為清楚起見,發明所屬技術領域中已知的可切割連接子可結合本文之揭露內容使用。例示性的如此連接子包括:F2A連接子、T2A連接子、P2A連接子、E2A連接子、及其等之組合(參見例如WO2017/127750)。發明所屬技術領域中具有通常知識者會理解到其他發明所屬技術領域中認可的連接子可適用於本文之揭露內容之構築體(例如由本文之揭露內容之核酸編碼)。發明所屬技術領域中具有通常知識者同樣會理解到其他多順反子構築體(在同一分子內分開編碼超過一種抗原/多肽的mRNA)可適用於如於本文中提供的用途。
於一些實施方式中,該連接子可選自包含以下者的群組:GGGGS、GGS、GGGS、GGSG、G、GS、錨蛋白重複、EAAAK、GPG、GPPPG、GPGPG、GP8G、GTP、PAPAP、KK、AP、F2A、E2A、P2A、T2A、AAY、及/或AYY。於一些實施方式中,該融合蛋白質含有三個功能域以及介入連接子,且具有以下結構:功能域-連接子-功能域-連接子-功能域。
於一進一步實施方式中,編碼源自冠狀病毒的胜肽的核酸序列係單一核酸分子之部分。此單一核酸分子較佳能夠獨立地表現數種蛋白質。於較佳實施方式中,編碼源自冠狀病毒的胜肽的核酸序列在單一核酸分子中藉由內部核糖體進入位(IRES)連接,使得將該二或多個核酸序列之各者分開轉譯成胺基酸序列成為可能。或者,將自切割性編碼2a胜肽的序列併入不同的冠狀病毒抗原之編碼序列之間。以此方式,二或多個因子可由一個單一核酸分子編碼。
本發明因此進一步提供一種多表位構築體,其包含編碼二或多種源自冠狀病毒的胜肽的核酸序列,其中該二或多種源自冠狀病毒的胜肽透過使用該二或多個編碼性序列之間的IRES分開地自該單一核酸分子轉譯。或者,本發明提供一種mRNA分子,其編碼由自切割性編碼2a胜肽的序列分開的二或多種源自冠狀病毒的胜肽,使該二種蛋白質序列之於轉譯之後的切割成為可能。
於一本發明之以下實施方式中,該等核酸序列以密碼子優化優化。
密碼子優化方法係發明所屬技術領域中已知的。例如,本文中提供的序列之任何一或多者之ORF可經密碼子優化。於一些實施方式中,密碼子優化可用以在目標及宿主生物中匹配密碼子頻率以增加GC量以增加mRNA穩定性或減少二級結構;最小化可能損傷轉錄或轉譯的縱排重複密碼子或連續鹼基;訂製轉錄及轉譯控制區;插入或移除蛋白質運輸序列;添加、移除、或混排蛋白質功能域;插入或缺失限制位;修改核糖體結合位及mRNA降解位;調整轉譯速率以允許蛋白質之種種功能域正確地摺疊;或減少或排除多核苷酸內的問題二級結構。密碼子優化工具、演算法、及服務係發明所屬技術領域中已知的。使用不同程式或方法產生的密碼子經優化mRNA序列可能差異巨大,而此係因為不同的密碼子優化策略差異處在於其等如何定量密碼子使用及實施密碼子改變。因此,透過不同密碼子分配產生的編碼相同多肽的mRNA可於所表現蛋白質之量顯示差異。於本發明之前後文中,RNA序列中可接受的變異可於未經優化及經優化RNA序列之間存在。於一些實施方式中,開讀框(ORF)序列係使用優化演算法優化。
於一些實施方式中,密碼子經優化序列與天然存在的或野生型序列ORF(例如編碼冠狀病毒抗原的天然存在的或野生型mRNA序列)共有小於約99%、小於約95%、小於約90%、小於約85%、小於約80%、小於約75%、小於約70%、小於約65%序列一致性。於一些實施方式中,密碼子經優化序列與天然存在的或野生型序列(例如編碼冠狀病毒抗原的天然存在的或野生型mRNA序列)共有在65%及85%之間(例如在約67%及約85%之間或在約67%及約80%之間)的序列一致性。於一些實施方式中,密碼子經優化序列與天然存在的或野生型序列(例如編碼冠狀病毒抗原的天然存在的或野生型mRNA序列)共有在65%及75%之間或約80%的序列一致性。於一特別實施方式中,密碼子經優化序列與天然存在的或野生型序列(例如編碼冠狀病毒抗原的天然存在的或野生型mRNA序列)共有70%序列一致性。
於一些實施方式中,密碼子經優化序列編碼一抗原,其免疫原性與由非密碼子經優化序列編碼的冠狀病毒抗原相同,或免疫原性比其高(例如高至少10%、至少20%、至少30%、至少40%、至少50%、至少100%、或至少200%)。
於一些實施方式中,密碼子經優化RNA可係其中G/C之量增加者。核酸分子(例如mRNA)之G/C量可影響RNA之穩定性。具有增加的量的鳥嘌呤(G)及/或胞嘧啶(C)殘基的RNA相較於含有大量的腺嘌呤(A)及胸腺嘧啶(T)或尿嘧啶(U)核苷酸的RNA可係功能上更穩定的。作為實例,WO02/098443揭露一種醫藥組成物,其含有藉由轉譯區中的序列修飾穩定化的mRNA。由於遺傳密碼之簡併性,該等修飾藉由以促進更高的RNA穩定性而不改變所得的胺基酸的密碼子取代存在的密碼子來起作用。此方法限於RNA之編碼區。
為了比較二或多個核苷酸序列的目的,一第一核苷酸序列與一第二核苷酸序列之間的「序列一致性」之百分比可藉由以下者計算:[與第二核苷酸序列中相對應位置的核苷酸相同的第一核苷酸序列中的核苷酸之數目]除以[第一核苷酸序列中的核苷酸之總數]並乘以[100%],其中第二核苷酸序列中相較於第一核苷酸序列的核苷酸之各缺失、插入、取代、或添加被認為係於單一核苷酸(位點)的差異。或者,二或多個核苷酸序列之間的序列一致性之程度可使用已知的用於序列排比的電腦演算法(諸如NCBI Blast v2.0)使用標準設定來計算。
為了比較二或多個胺基酸序列之目的,一第一胺基酸序列與一第二胺基酸序列之間的「序列一致性」(本文中亦稱為「胺基酸一致性」)之百分比可藉由以下者計算:[與第二胺基酸序列中相對應位置的胺基酸殘基相同的第一胺基酸序列中的胺基酸殘基之數目]除以[第一胺基酸序列中的胺基酸殘基之總數]並乘以[100%],其中第二胺基酸序列中相較於第一胺基酸序列的胺基酸殘基之各缺失、插入、取代、或添加被認為係於單一胺基酸殘基(位點)的差異,即為如本文中定義的「胺基酸差異」。或者,二個胺基酸序列之間的序列一致性之程度可使用已知的電腦演算法(諸如以上提及的用於確定核苷酸序列之序列一致性之程度者)同樣使用標準設定來計算。一特別方法利用設為預設參數的WU-BLAST-2之BLAST模組,並將重疊跨度及重疊分數分別設為1及0.125。
於一特別實施方式中,本發明提供一種醫藥組成物,其包含該多表位構築體、該組合、或該多肽、及至少一種醫藥上可接受的劑。
用於本文中,「組成物」係指二或多種產物或化合物(例如劑、調節物(modulator)、調節子(regulator)、等等)之任何混合物。其可係溶液、懸浮體、液體、或水性調配物、或任何其等之組合。
於本發明之前後文中,通過術語「醫藥組成物」提及一種組成物,其具有醫藥特性。換言之,提及一種組成物,其提供藥理及/或生理功效。醫藥組成物可包含一或多種醫藥上可接受的劑,諸如賦形劑、載劑、稀釋劑。
於一些實施方式中,該醫藥上可接受的劑包括(但不限於)生物相容性媒介物、佐劑、添加劑、及稀釋劑以達成可呈劑量形式使用的組成物。另外的適合的醫藥載劑及稀釋劑以及對於使用其等而言的醫藥必需品係於Remington氏醫藥科學(Remington's Pharmaceutical Sciences)中敘述。
用於本文中且除非另外明確指出,應將術語「賦形劑」理解成為了諸如以下者的長期穩定之目的而與所包括的活性化合物一起調配的任何物質:於預期的架儲期內的變性或聚集之預防、增加含有小量有效力的活性化合物的液體或固體調配物之體積(因此往往稱為「增積劑」、「填充劑」、或「稀釋劑」)、或賦予對最終劑量形式中的活性化合物的增強,諸如促進吸收、減低黏度、或增強可溶性。
於另一實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其係在脂質體或奈米粒子(諸如脂質奈米粒子或聚合奈米粒子,尤其脂質奈米粒子)中調配。
本文中界定的構築體、組合、多肽、或醫藥組成物可在囊封該構築體以保護其等免於降解並且促進細胞吸收的脂質奈米粒子(LNP)中調配。
於本發明之前後文中,通過術語「脂質奈米粒子」或LNP提及由一或多種脂質(例如不同脂質之組合)構成的奈米級粒子。該LNP中使用的可能的脂質可係例如(但不限於)至少一種磷脂、至少一種經修飾脂質,諸如PEG脂質、至少一種可離子化脂質、至少一種固醇。本文之揭露內容之脂質奈米粒子及其組成物一般係發明所屬技術領域中已知的。
於本發明之前後文中,術語「PEG脂質」或「聚乙二醇化脂質」意欲係任何適合的以PEG(聚乙二醇)基團修飾的脂質。例如,於本發明之前後文中,PEG脂質可係C14-PEG脂質,諸如例如DMG-PEG2000(1,2-二肉豆蔻醯基-內消旋-甘油-3-甲氧基聚乙二醇-2000)。C14-PEG脂質含有聚乙二醇部分,其界定該等脂質之分子量、以及包含14個C原子的脂肪酸尾。或者,本發明之PEG脂質可係C16-或C18-脂質。
於本發明之前後文中,於化合物或脂質之前後文中,術語「可離子化」(或陽離子性)意味任何該化合物或脂質中的不帶電基團之存在,該不帶電基團能夠藉由產生一離子(通常係H+離子)而解離並因此本身變得帶正電。或者,任何該化合物或脂質中的不帶電基團可產生一電子並因此變得帶負電。用於本文中,可適當地使用任何可離子化脂質之類型。例如,適合的可離子化脂質係可離子化胺基脂質,其包含2個通過S-S鍵連接的相同或不同的尾。
於本發明之前後文中,術語「磷脂」意欲係由二個疏水性脂肪酸「尾」及一由磷酸基組成的親水性「頭」組成的脂質分子。該二個組份最常通過甘油分子連接在一起,因此,在本發明之磷脂中較佳係甘油-磷脂。此外,該磷酸基往往以簡單有機分子修飾,該等簡單有機分子諸如係膽鹼(即成為磷酸膽鹼)或乙醇胺(即成為磷酸乙醇胺)。
於本發明之前後文中,術語「固醇」(亦稱為類固醇醇)係一類固醇之亞類,其在植物、動物、及真菌中天然存在或可藉由一些細菌生產。於本發明之前後文中,可使用任何適合的固醇,諸如選自包含以下者的清單:膽固醇、麥角固醇、菜油固醇、氧化膽固醇、樟芝素(antrosterol)、鏈甾醇(desmosterol)、尼卡固醇(nicasterol)、麥固醇、及豆固醇;較佳膽固醇。
於一特別實施方式中,該LNP包含約及在10 mol%及60 mol%之間;較佳約及在40 mol%及60 mol%之間的該可離子化脂質。
於又另一特別實施方式中,該LNP包含約及在15 mol%及50 mol%之間;較佳約及在20 mol%及40 mol%之間的固醇。
於一進一步實施方式中,該LNP包含約及在0.5 mol%及10 mol%之間;較佳約及在0.5 mol%及5 mol%之間的該PEG脂質。
於另一特別實施方式中,該LNP包含約及在5 mol%及40 mol%之間,較佳約及在5 mol%及15 mol%之間的該磷脂。
因此,於一更特別的實施方式中,本發明之LNP包含約及在10 mol%及70 mol%之間的該可離子化脂質;及/或約及在15 mol%及50 mol%之間的固醇;及/或約及在0.5 mol%及10 mol%之間的該PEG脂質;及/或約及在5 mol%及40 mol%之間的該磷脂。
於另一特別實施方式中,本發明之LNP包含約及在40 mol%及60 mol%之間的該可離子化脂質;及約及在20 mol%及40 mol%之間的固醇;約及在0.5 mol%及5 mol%之間的該PEG脂質;及約及在5 mol%及15 mol%之間的該磷脂。
於一特別實施方式中,本發明之LNP包含50 mol%的可離子化脂質、10 mol%的磷脂、1.5 mol%的PEG脂質、及38.5 mol%的固醇。
用於本文中,術語「奈米粒子」係指任何粒子,其具有使該粒子適用於全身性(尤其肌肉內或靜脈內)投予的直徑,典型具有小於1000奈米(nm),較佳小於500 nm,甚至更佳小於200 nm,諸如例如在50及200 nm之間,較佳在70及160 nm之間的直徑。
於一些實施方式中,脂質之混合物形成脂質奈米粒子。於一些實施方式中,在該等脂質奈米粒子中調配該等構築體。於一些實施方式中,首先以空脂質奈米粒子的形式形成該等脂質奈米粒子然後於即將投予前(例如幾分鐘至一個小時內)組合其等與疫苗之構築體。
為避免任何誤解,本發明之LNP可包含單一多表位構築體,或其等可包含多種構築體,諸如一或多種編碼免疫調節蛋白的構築體及/或一或多種編碼抗原專一性蛋白的構築體之組合。
於一極特別的實施方式中,可組合該等編碼免疫調節分子的構築體與一或多種編碼源自冠狀病毒的胜肽的構築體。例如,本發明之LNP可包含編碼源自冠狀病毒的胜肽的構築體組合一或多種編碼免疫刺激分子CD40L、CD70、及/或caTLR4的構築體(諸如Dimix或Trimix),進一步組合一或多種編碼冠狀病毒醣蛋白的構築體。
此外,應了解本發明之LNP可包含根據本發明的該組合、該多肽、或該醫藥組成物。
於一些實施方式中,可在相同的脂質奈米粒子中調配二或多種編碼抗原的不同的構築體(例如mRNA)。
於一進一步方面,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於人類或獸醫醫學。
醫藥組成物特別適合作為疫苗。
於本發明之前後文中,用於本文中,術語「疫苗」意欲係任何意欲提供對抗一疾病的適應性免疫力(T細胞反應及抗體)的製劑。為此,本文所指術語「疫苗」包含至少一種多表位構築體、至少一種組合、至少一種多肽、或至少一種醫藥組成物,其視需要被調配成LNP,且適應性免疫反應針對其啟動。
於一些實施方式中,該疫苗可包含裸多表位構築體、懸浮在緩衝溶液中的裸多肽。
疫苗可係預防性的(實例:以預防或改善任何天然或「野生」病原體造成的未來感染之效應)、或治療性的(實例,以主動治療或減輕持續中的疾病之症狀)。疫苗之投予稱為疫苗接種。
本發明亦提供一種疫苗,其用於人類或獸醫醫學。疫苗之用途亦係意欲的。最後,本發明提供一種用於預防及治療人類及獸醫病症的方法,其係藉由向需要預防及治療人類及獸醫病症的個體投予疫苗。
於一特別實施方式中,本發明提供一種疫苗,其用於在個體中治療或預防冠狀病毒,尤其SARS-CoV-2病毒。
於本申請案之前後文中,術語「治療(「treatment」、「treating」、「treat」、及類似者)係指獲得所欲的藥理及/或生理功效。該功效可於完全或部份預防一疾病或其症狀方面係預防性的及/或可於部分或完全穩定或治癒一疾病及/或導因於該疾病的有害效應方面係治療性的。「治療」涵蓋任何哺乳動物(尤其人類)中的疾病之治療,且包括:(a)預防該疾病或症狀在可能易患有該疾病或症狀但尚未被診斷為患有該疾病或症狀的個體中發生;(b)抑制該等疾病症狀,即阻止其發展;或(c)緩解該疾病症狀,即造成該疾病或症狀之消退。
於另一特別實施方式中,本發明提供一種疫苗,其用於在個體中誘發對抗冠狀病毒(尤其SARS-CoV-2病毒)的免疫反應。
用於本文通篇,術語「免疫反應」非意欲限於可能已於本文中例示的免疫反應之類型。此術語因此包括所有針對其疫苗接種會對個體有益的感染物。
本發明之疫苗可用於誘發免疫反應,尤其對抗疾病相關抗原或表現疾病相關抗原的細胞的免疫反應,諸如對抗冠狀病毒抗原的免疫反應。較佳,該免疫反應係T細胞反應。於一實施方式中,該疾病相關抗原係冠狀病毒抗原。本文中敘述的包含在奈米粒子中的由構築體編碼的抗原較佳係疾病相關抗原或引發對抗疾病相關抗原或表現疾病相關抗原的細胞的免疫反應。
於一進一步方面,本發明係關於一種誘發對抗冠狀病毒的免疫反應的方法,其包含:向一個體投予治療有效量的該疫苗。
於本發明之前後文中,可向健康個體或於感染早期於潛伏期之期間或於活躍感染之期間於症狀發作後預防性投予或治療性投予該疫苗作為主動致免疫方案的部分。
於一些實施方式中,該疫苗可以單一治療的形式或以組合其他冠狀病毒的疫苗的組合治療的形式投予。
於一些實施方式中,該疫苗可以單劑、二劑、三劑、四劑、或適用時重複投予。
於一些實施方式中,該單一治療中的投予之時間可係,但不限於1週、2週、3週、4週、2個月、3個月、6個月、1年且可每年重複。
於另一實施方式中,組合治療中的注射之間的投予之時間可係,但不限於1分鐘至30分鐘、30分鐘至1個小時、3個小時、6個小時、12個小時、1日、1週、2週、3週、4週、2個月、3個月、6個月、1年。
於一特別實施方式中,以約及在10至100微克(µg)之間的劑量注射該個體。如於本文中提供的構築體之有效量可低至10 µg,例如以單劑的形式或以二個5 µg劑的形式投予。於一些實施方式中,該有效量係10 µg - 100 µg的總劑量。例如,該有效量可係10 µg、20 µg、30 µg、40 µg、50 µg、60 µg、70 µg、80 µg、90 µg、100 µg的總劑量。於一些實施方式中,該有效量係10 µg的總劑量。於一些實施方式中,該有效量係20 µg的總劑量。於一些實施方式中,該有效量係30 µg的總劑量。於一些實施方式中,該有效量係60 µg的總劑量。於一些實施方式中,該有效量係80 µg的總劑量。於一些實施方式中,該有效量係100 µg的總劑量。
於又另一實施方式中,本發明提供該多表位構築體、該組合、該多肽、或該醫藥組成物,其用於疫苗接種,尤其肌肉內疫苗接種。
於一些實施方式中,類似於發明所屬技術領域中已知的失活疫苗之投予,可肌肉內、皮下、鼻內、皮內、或透過淋巴系統投予該疫苗。
本發明之疫苗尤其意欲用於肌肉內投予,即將液體物質直接注射至肌肉內。
本發明亦提供一種疫苗,其中其投予係靜脈內,即直接將液體物質輸注至靜脈內。
表 1 :源自冠狀病毒的胜肽之胺基酸序列。
表 2 :源自冠狀病毒的胜肽之核酸序列。
SEQ ID | 胜肽或片段 | 胺基酸序列 |
1 | E_1-21 | MYSFVSEETGTLIVNSVLLFL |
2 | M_160-180 | DIKDLPKEITVATSRTLSYYK |
3 | M_37-57 | FAYANRNRFLYIIKLIFLWLL |
4 | M_8-28 | ITVEELKKLLEQWNLVIGFLF |
5 | N_105-125 | SPRWYFYYLGTGPEAGLPYGA |
6 | N_296-316 | TDYKHWPQIAQFAPSASAFFG |
7 | N_302-322 | PQIAQFAPSASAFFGMSRIGM |
8 | NS6(ORF6)_1-21 | MFHLVDFQVTIAEILLIIMRT |
9 | NSP1(ORF1a)_52-72 | GLVEVEKGVLPQLEQPYVFIK |
10 | NSP12(ORF1b)_114-134 | ISRQRLTKYTMADLVYALRHF |
11 | NSP12(ORF1b)_231-251 | VPVVDSYYSLLMPILTLTRAL |
12 | NSP12(ORF1b)_332-352 | KIFVDGVPFVVSTGYHFRELG |
13 | NSP12(ORF1b)_501-521 | SAGFPFNKWGKARLYYDSMSY |
14 | NSP12(ORF1b)_559-579 | GVSICSTMTNRQFHQKLLKSI |
15 | NSP12(ORF1b)_616-636 | GWDYPKCDRAMPNMLRIMASL |
16 | NSP12(ORF1b)_64-84 | NLIDSYFVVKRHTFSNYQHEE |
17 | NSP12(ORF1b)_680-700 | TSSGDATTAYANSVFNICQAV |
18 | NSP12(ORF1b)_852-872 | GTLMIERFVSLAIDAYPLTKH |
19 | NSP12(ORF1b)_886-906 | QYIRKLHDELTGHMLDMYSVM |
20 | NSP13(ORF1b)_131-151 | KLFAAETLKATEETFKLSYGI |
21 | NSP13(ORF1b)_228-248 | TSHTVMPLSAPTLVPQEHYVR |
22 | NSP13(ORF1b)_372-392 | VFDEISMATNYDLSVVNARLR |
23 | NSP13(ORF1b)_394-414 | KHYVYIGDPAQLPAPRTLLTK |
24 | NSP13(ORF1b)_522-542 | ASKILGLPTQTVDSSQGSEYD |
25 | NSP14(ORF1b)_175-195 | KNLSDRVVFVLWAHGFELTSM |
26 | NSP14(ORF1b)_228-248 | HHSIGFDYVYNPFMIDVQQWG |
27 | NSP14(ORF1b)_320-430 | ALLADKFPVLHDIGNPKAIKC |
28 | NSP14(ORF1b)_458-478 | QVVSDIDYVPLKSATCITRCN |
29 | NSP14(ORF1b)_500-520 | MMISAGFSLWVYKQFDTYNLW |
30 | NSP14(ORF1b)_504-524 | AGFSLWVYKQFDTYNLWNTFT |
31 | NSP15(ORF1b)_292-312 | CSVIDLLLDDFVEIIKSQDLS |
32 | NSP15(ORF1b)_41-61 | ELFENKTTLPVNVAFELWAKR |
33 | NSP16(ORF1b)_53-73 | YLNTLTLAVPYNMRVIHFGAG |
34 | NSP3(ORF1a)_1-21 | APTKVTFGDDTVIEVQGYKSV |
35 | NSP3(ORF1a)_1136-1156 | ELKVTFFPDLNGDVVAIDYKH |
36 | NSP3(ORF1a)_1504-1524 | GLVAEWFLAYILFTRFFYVLG |
37 | NSP3(ORF1a)_1549-1569 | LIINLVQMAPISAMVRMYIFF |
38 | NSP3(ORF1a)_209-229 | SFSGYLKLTDNVYIKNADIVE |
39 | NSP4(ORF1a)_331-351 | LTPVYSFLPGVYSVIYLYLTF |
40 | NSP4(ORF1a)_340-360 | GVYSVIYLYLTFYLTNDVSFL |
41 | NSP4(ORF1a)_36-56 | HTDFSSEIIGYKAIDGGVTRD |
42 | NSP4(ORF1a)_417-437 | LCTFLLNKEMYLKLRSDVLLP |
43 | NSP5(ORF1a)_164-184 | HMELPTGVHAGTDLEGNFYGP |
44 | NSP6(ORF1a)_237-260 | LTLGVYDYLVSTQEFRYMNSQGLL |
45 | NSP8(ORF1a)_150-184 | ASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPL |
46 | NSP8(ORF1a)_53-73 | AAMQRKLEKMADQAMTQMYKQ |
47 | NSP9(ORF1a)_14-34 | CAAGTTQTACTDDNALAYYNT |
SEQ ID | 胜肽或片段 | 核酸序列 |
48 | E_1-21 | auguacucauucguuucggaagagacagguacguuaauaguuaauagcguacuucuuuuucuu |
49 | M_160-180 | gacaucaaggaccugccuaaagaaaucacuguugcuacaucacgaacgcuuucuuauuacaaa |
50 | M_37-57 | uuugccuaugccaacaggaauagguuuuuguauauaauuaaguuaauuuuccucuggcuguua |
51 | M_8-28 | auuaccguugaagagcuuaaaaagcuccuugaacaauggaaccuaguaauagguuuccuauuc |
52 | N_105-125 | aguccaagaugguauuucuacuaccuaggaacugggccagaagcuggacuucccuauggugcu |
53 | N_296-316 | acugauuacaaacauuggccgcaaauugcacaauuugcccccagcgcuucagcguucuucgga |
54 | N_302-322 | ccgcaaauugcacaauuugcccccagcgcuucagcguucuucggaaugucgcgcauuggcaug |
55 | NS6(ORF6)_1-21 | auguuucaucucguugacuuucagguuacuauagcagagauauuacuaauuauuaugaggacu |
56 | NSP1(ORF1a)_52-72 | ggcuuaguagaaguugaaaaaggcguuuugccucaacuugaacagcccuauguguucaucaaa |
57 | NSP12(ORF1b)_114-134 | auaucacgucaacgucuuacuaaauacacaauggcagaccucgucuaugcuuuaaggcauuuu |
58 | NSP12(ORF1b)_231-251 | guuccuguuguagauucuuauuauucauuguuaaugccuauauuaaccuugaccagggcuuua |
59 | NSP12(ORF1b)_332-352 | aaaauauuuguugaugguguuccauuuguaguuucaacuggauaccacuucagagagcuaggu |
60 | NSP12(ORF1b)_501-521 | ucagcugguuuuccauuuaauaaaugggguaaggcuagacuuuauuaugauucaaugaguuau |
61 | NSP12(ORF1b)_559-579 | ggugucucuaucuguaguacuaugaccaauagacaguuucaucaaaaauuauugaaaucaaua |
62 | NSP12(ORF1b)_616-636 | gguugggauuauccuaaaugugauagagccaugccuaacaugcuuagaauuauggccucacuu |
63 | NSP12(ORF1b)_64-84 | aauuuaauugauucuuacuuuguaguuaagagacacacuuucucuaacuaccaacaugaagaa |
64 | NSP12(ORF1b)_680-700 | accucaucaggagaugccacaacugcuuaugcuaauaguguuuuuaacauuugucaagcuguc |
65 | NSP12(ORF1b)_852-872 | gguacacuuaugauugaacgguucgugucuuuagcuauagaugcuuacccacuuacuaaacau |
66 | NSP12(ORF1b)_886-906 | caauacauaagaaagcuacaugaugaguuaacaggacacauguuagacauguauucuguuaug |
67 | NSP13(ORF1b)_131-151 | aagcuuuuugcagcagaaacgcucaaagcuacugaggagacauuuaaacugucuuaugguauu |
68 | NSP13(ORF1b)_228-248 | acaucacauacaguaaugccauuaagugcaccuacacuagugccacaagagcacuauguuaga |
69 | NSP13(ORF1b)_372-392 | gucuuugaugaaauuucaauggccacaaauuaugauuugaguguugucaaugccagauuacgu |
70 | NSP13(ORF1b)_394-414 | aagcacuauguguacauuggcgacccugcucaauuaccugcaccacgcacauugcuaacuaag |
71 | NSP13(ORF1b)_522-542 | gccucaaagauuuugggacuaccaacucaaacuguugauucaucacagggcucagaauaugac |
72 | NSP14(ORF1b)_175-195 | aaaaaucucucugacagagucguauuugucuuaugggcacauggcuuugaguugacaucuaug |
73 | NSP14(ORF1b)_228-248 | caucauucuauuggauuugauuacgucuauaauccguuuaugauugauguucaacaauggggu |
74 | NSP14(ORF1b)_320-430 | gcauuauuagcagacaaauucccaguucuucacgacauugguaacccuaaagcuauuaagugu |
75 | NSP14(ORF1b)_458-478 | caaguagugucagauauagauuauguaccacuaaagucugcuacguguauaacacguugcaau |
76 | NSP14(ORF1b)_500-520 | augaugaucucagcuggcuuuagcuuguggguuuacaaacaauuugauacuuauaaccucugg |
77 | NSP14(ORF1b)_504-524 | gcuggcuuuagcuuguggguuuacaaacaauuugauacuuauaaccucuggaacacuuuuaca |
78 | NSP15(ORF1b)_292-312 | uguucuguuauugauuuauuacuugaugauuuuguugaaauaauaaaaucccaagauuuaucu |
79 | NSP15(ORF1b)_41-61 | gaauuguuugaaaauaaaacaacauuaccuguuaauguagcauuugagcuuugggcuaagcgc |
80 | NSP16(ORF1b)_53-73 | uauuuaaacacauuaacauuagcuguacccuauaauaugagaguuauacauuuuggugcuggu |
81 | NSP3(ORF1a)_1-21 | gcaccaacaaagguuacuuuuggugaugacacugugauagaagugcaagguuacaagagugug |
82 | NSP3(ORF1a)_1136-1156 | gagcuuaaaguuacauuuuucccugacuuaaauggugaugugguggcuauugauuauaaacac |
83 | NSP3(ORF1a)_1504-1524 | ggcuuaguugcagagugguuuuuggcauauauucuuuucacuagguuuuucuauguacuugga |
84 | NSP3(ORF1a)_1549-1569 | uuaauaauuaaucuuguacaaauggccccgauuucagcuaugguuagaauguacaucuucuuu |
85 | NSP3(ORF1a)_209-229 | aguuuuagugguuauuuaaaacuuacugacaauguauacauuaaaaaugcagacauuguggaa |
86 | NSP4(ORF1a)_331-351 | uuaacaccaguuuacucauucuuaccugguguuuauucuguuauuuacuuguacuugacauuu |
87 | NSP4(ORF1a)_340-360 | gguguuuauucuguuauuuacuuguacuugacauuuuaucuuacuaaugauguuucuuuuuua |
88 | NSP4(ORF1a)_36-56 | cauacugacuuuucaagugaaaucauaggauacaaggcuauugaugguggugucacucgugac |
89 | NSP4(ORF1a)_417-437 | cugugcaccuuuuuguuaaauaaagaaauguaucuaaaguugcguagugaugugcuauuaccu |
90 | NSP5(ORF1a)_164-184 | cauauggaauuaccaacuggaguucaugcuggcacagacuuagaagguaacuuuuauggaccu |
91 | NSP6(ORF1a)_237-260 | cugacucuugguguuuaugauuacuuaguuucuacacaggaguuuagauauaugaauucacagggacuacuc |
92 | NSP8(ORF1a)_150-184 | gcaucagcauugugggaaauccaacagguuguagaugcagauaguaaaauuguucaacuuagugaaauuaguauggacaauucaccuaauuuagcauggccucuu |
93 | NSP8(ORF1a)_53-73 | gcagccaugcaacguaaguuggaaaagauggcugaucaagcuaugacccaaauguauaaacag |
94 | NSP9(ORF1a)_14-34 | ugugcugccgguacuacacaaacugcuugcacugaugacaaugcguuagcuuacuacaacaca |
於本發明之前後文中,上表之RNA序列亦可以相對應的DNA序列置換,其中於如本文中定義的序列中「U」係以「T」置換。
實施例
本發明藉由以下非限制性實施例闡明
實施例 1 : SARS-COV-2 之保守性免疫原性 T 細胞表位之預測
SARS-CoV-2保守及表位預測多表位構築(MyNEO)(
表 2)。
作電腦模擬預測以確定哪些SARS-CoV-2抗原可能被加工、運送至MHC分子上、並與其組份穩定結合以及引發免疫反應。針對各個由SARS-CoV-2表現的蛋白質作預測。對於各個蛋白質,針對在第I型MHC對偶基因上呈現的可能性分析每種長度9、10、或11個胺基酸的可能的胜肽。用於呈現預測的MHC對偶基因係基於其等之在人類族群中的盛行率挑選。此外,對於各個預期會在第I型MHC上呈現的胜肽,針對所呈現的胜肽之引發T細胞反應的可能性作預測。
此外,對於胜肽呈現及免疫原性預測,進行序列保守分析以鑑認於在患有SARS-CoV-2感染的人中鑑認的SARS-CoV-2變體之間高度保守的蛋白質區域。優先考慮位於保守性蛋白質區域中的表位有明顯優點,此係因為其確保最終疫苗之對抗不同的已鑑認的SARS-CoV-2病毒株的寬廣的效力。此外,由於保守及功能重要性之間的固有連結,基於演化保守的表位挑選最小化隨著病毒在人類群體中傳播並且累積新突變而產生的表位逃脫之風險。
保守之程度可基於在患有SARS-CoV-2感染的人取樣的基因體序列資料計算。保守係以時間解析及逐窗方式計算。對於一沿著SARS-CoV-2蛋白質序列的特定窗,計算平均序列保守,其中越近期的變體權重越高以將病毒演化納入考量。
對於用於疫苗的源自冠狀病毒的胜肽之挑選,使用混合性(conglomerative)評分方法以增加引發更有效力的殖株型(clonotype)之機率及更有效地預防T-細胞逃脫。基於胜肽之整體的保守之程度及其等含有的表位之數目及品質來決定其等之優先等級,並優先考慮含有多個可標靶的抗原的胜肽區域。
於最終的構築體中,將所選的胜肽串聯成一長序列。新表位(neoepitope)出現在胜肽序列之間的接合點係可能的(所謂的接合點表位)。如此接合點表位可干擾免疫反應而使其自針對相關的表位轉變成針對不相關的接合點表位。為降低此等表位之可能的負面影響,以最小化所預測的接合點表位之數目的方式排列該等窗。
實施例 2 : RNA 構築體之製備 RNA 構築體之製備
將編碼不同的串聯的如
表 2中界定的源自冠狀病毒的胜肽之核酸序列的DNA序列符合讀框地選殖至源自LAMP1的訊息肽及DC-LAMP序列以優化加工及至第I型及第II型MHC的呈現。因為冗長的構築體(例如> 11 Kb)不被良好地表現,亦可在二個分開的mRNA構築體上編碼表位。例如,構築體2.2(其係2 Kb)亦可以二個分開的構築體2.2.1(1 Kb)及構築體2.2.2(1 Kb)的形式產生;或類似地,構築體2.4(2 Kb)亦可以二個分開的構築體2.4.1及構築體2.4.2)的形式產生。藉由修改野生型或參考編碼性DNA序列以穩定化及表現優化來製備如於
表 3中界定的所得DNA序列。將序列引入包含穩定性5’-UTR及3’-UTR序列且另外包含至少90個腺苷的延伸片段的DNA載體中。
在細菌中使用發明所屬技術領域中已知的普通實驗指引轉形及增殖所獲得的質體DNA構築體。最後,將經純化及線性化的質體DNA構築體用於隨後的RNA試管內轉錄。於包含N1-甲基-假尿苷及cap1類似物的核苷酸混合物之存在下於適合的緩衝條件下進行使用T7 RNA聚合酶的試管內轉錄。於試管內轉錄之期間併入N1-甲基-假尿苷以改善表現及降低由mRNA構築體本身造成的有害先天性免疫活化。純化所獲得的RNA構築體並將其等用於試管內及活體內實驗。
使用西方墨漬的串聯的 T 細胞表位 RNA 構築體之表現分析
對於表位構築體表現之分析,使用Lipofectamine MessengerMAX作為轉染劑以未經調配mRNA轉染HeLa細胞。以320,000個細胞/槽孔的密度將HeLa細胞接種在6槽孔盤中。以2 μg未經調配mRNA使用Lipofectamine MessengerMAX(Invitrogen)轉染HeLa細胞。於實驗中使用根據實施例2製備及於
表 3中列出的mRNA構築體,包括陰性對照組(注射用水)。轉染後24h時,藉由胰蛋白酶來分開HeLa細胞,收穫,並製備細胞溶胞產物。使細胞溶胞產物經歷SDS-PAGE接著西方墨漬偵測。使用抗DC-LAMP蛋白質抗體(其組合適合的二級抗體使用)進行西方墨漬分析。
結果 實施例 2
所使用的mRNA構築體導致基於序列優化而變化的可偵測到的表現(西方墨漬未顯示)。較佳構築體之經優化RNA序列係於
表 4中列出,而構築體之未經優化的RNA序列係於
表 3中列出且可包含以下SEQ ID:
1. SARS-CoV-2構築體2.1_DCL(SEQ ID NO: 95):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 55、89、57、53、49、92、70、71、48、74、79、77、87、65、59、88、72、60、81(參見圖4)。
2. SARS-CoV-2構築體2.2_DCL(SEQ ID NO: 96):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 55、65、59、76、83、60、94、71、49、74、79、87、88、89、48、58、68、92、51、52、57、85、81、53、67、72、70(參見圖5)。
3. SARS-CoV-2構築體2.2.1_DCL(SEQ ID NO: 97):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 55、65、59、76、83、60、94、71、49、74、79、87、88(參見圖6)。
4. SARS-CoV-2構築體2.2.2_DCL(SEQ ID NO: 98):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 89、48、58、68、92、51、52、57、85、81、53、67、72、70(參見圖7)。
5. SARS-CoV-2構築體2.3_DCL(SEQ ID NO: 99):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 60、63、54、49、84、89、71、57、65、91、48、56、66、80、79、67、78、75、59、82(參見圖8)。
6. SARS-CoV-2構築體2.4_DCL(SEQ ID NO: 100):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61、89、48、65、79、62、57、50、93、84、49、59、64、69、82、56(參見圖9)。
7. SARS-CoV-2構築體2.4.1_DCL(SEQ ID NO: 101):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 91、71、78、66、86、63、60、80、90、75、73、54、67、61(參見圖10)。
8. SARS-CoV-2構築體2.4.2_DCL(SEQ ID NO: 102):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 89、48、65、79、62、57、50、93、84、49、59、64、69、82、56(參見圖11)。
9. SARS-CoV-2構築體2.5_DCL(SEQ ID NO: 103):一種多表位構築體,其包含以下核酸序列:SEQ ID NO: 89、59、60、49、65、79、71、67、57、48(參見圖12)。
實施例 3 :使用 MRNA 編碼的 SARS-COV-2 表位的小鼠之疫苗接種 RNA 構築體之製備
如於實施例1敘述地製備SARS-CoV-2表位構築體並於在活體內疫苗接種實驗中使用前以LNP調配。
小鼠之疫苗接種及流式細胞測量術
以5 µg的劑量的mRNA疫苗組成物肌肉內注射雌性BALB/c小鼠(6-8週大)。作為陰性對照組,以緩衝液疫苗接種一組小鼠。所有的動物皆係於第0日及第21日時疫苗接種。
根據發明所屬技術領域中已知的標準實驗指引分離來自經疫苗接種小鼠的脾細胞。簡言之,通過細胞濾過器碾碎經分離脾臟並以PBS洗滌接著溶胞紅血球。於大範圍的使用PBS的洗滌步驟之後,將在RPMI中的脾細胞接種至96槽孔盤中(每槽孔2×10
6個細胞)。於37°C下在蛋白質運送抑制劑之存在下以匹配mRNA構築體中的表位的特別胜肽表位之混合物刺激細胞(2 μg/ml的各個胜肽)達5個小時。於刺激後,洗滌細胞並使用Cytofix/Cytoperm試劑(BD Biosciences)根據製造商之指引針對細胞內細胞介素作染色。將以下抗體用於染色:Thy1.2-Alexa700(BioLegend)、CD4-FITC(BioLegend)、CD8-V450(BD Biosciences)、CD107a-BV711(BD Biosciences)、及IFNγ-PE(BD Biosciences)。使用Zombie Aqua以區分活/死細胞(Invitrogen)。使用Attune流式細胞儀(Thermo Fisher Scientific)獲得細胞。使用FlowJo套裝軟體(Tree Star, Inc.)分析流式細胞測量術數據
結果 實施例 3
如
圖 1中顯示的,於使用mRNA-LNP的基礎劑/追加劑疫苗接種之後,使用編碼串聯的源自SARS-CoV-2之非結構性蛋白質之保守性區域的表位的mRNA的疫苗接種誘發了強力的表位專一性CD8 T細胞反應。
實施例 4 :使用 MRNA 構築體 2.3 opt2 的小鼠之疫苗接種
於此實施例中,設想了一種組合疫苗策略。
根據實施例2之細節製備RNA構築體,疫苗接種,並根據實施例3之細節進行結果之分析。
體液反應係由全長SARS-CoV-2棘mRNA引發且T細胞反應係由編碼含有由病毒之完整基因體編碼的表位的串聯的蛋白質的mRNA(構築體2.3 opt2 - SEQ ID NO:117)引發。此處,活體內組合此二種mRNA構築體。選擇劑量反應方法,其中等莫耳比率的該二種組份係根據下表從各0,2 ug測試至各10 ug:
結果
RNA | Mod | 劑量 / 體積 | 治療日 | 收集 | 小鼠 |
全長棘mRNA +構築體2.3 | N1mψ-UTP | 各50μl/10μg | D0/d21 im | 血液6h pi,d35 | 5 |
全長棘mRNA +構築體2.3 | N1mψ-UTP | 各50μl/2μg | D0/d21 im | 血液6h pi,d35 | 5 |
全長棘mRNA +構築體2.3 | N1mψ-UTP | 各50μl/1μg | D0/d21 im | 血液6h pi,d35 | 5 |
全長棘mRNA +構築體2.3 | N1mψ-UTP | 各50μl/0.2μg | D0/d21 im | 血液6h pi,d35 | 5 |
空LNP | 各等於50ml/10mg | D0/d21 im | 血液6h pi,d35 | 5 | |
緩衝液 | D0/d21 im | 血液6h pi,d35 | 5 |
於各個疫苗接種事件(基礎劑或追加劑)後,發生了極輕微的暫時重量喪失(最大5%)(數據未顯示)。候選mRNA疫苗中的抗原之組合未導致增加的毒性之徵象,即使於較高的劑量亦如此(數據未顯示)。
於疫苗接種後,吾人觀察到IgG1及IgG2a反應兩者之清楚的誘發,有來自第二疫苗接種的專一追加功效(圖2)。劑量越低劑量範圍效應越明顯。於高於1 μg的劑量觀察到疫苗接種劑量之高原期效應。
此外,於所有所測試劑量皆可見到多功能CD8+ T細胞活化之劑量-反應增加(圖3)。
結論
自mRNA之組合幾乎未見到任何可見的毒性。幾乎所有所測試細胞介素(尤其第II型INF相關性細胞介素)於追加劑後皆增加,有清楚的劑量-反應功效。
於d21及d35皆觀察到高S專一性IgG1效價,而自d21至d35觀察到良好的誘發。對於所有高於1 μg的劑量皆觀察到明顯的高原期效應。
最後,對於CD8+ T細胞反應,吾人觀察到清楚的劑量-範圍功效。
因此,此等數據證明了其中揭露的構築體於對抗COVID感染的疫苗接種策略具有潛力。
表 3 :多表位構築體之未經優化的 RNA 序列。
SEQ ID | 名稱 | 序列 |
95 | SARS-CoV-2構築體2.1_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCAUGUUUCAUCUCGUUGACUUUCAGGUUACUAUAGCAGAGAUAUUACUAAUUAUUAUGAGGACUCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUACUGAUUACAAACAUUGGCCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAGCAUCAGCAUUGUGGGAAAUCCAACAGGUUGUAGAUGCAGAUAGUAAAAUUGUUCAACUUAGUGAAAUUAGUAUGGACAAUUCACCUAAUUUAGCAUGGCCUCUUAAGCACUAUGUGUACAUUGGCGACCCUGCUCAAUUACCUGCACCACGCACAUUGCUAACUAAGGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGCAUUAUUAGCAGACAAAUUCCCAGUUCUUCACGACAUUGGUAACCCUAAAGCUAUUAAGUGUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGCUGGCUUUAGCUUGUGGGUUUACAAACAAUUUGAUACUUAUAACCUCUGGAACACUUUUACAGGUGUUUAUUCUGUUAUUUACUUGUACUUGACAUUUUAUCUUACUAAUGAUGUUUCUUUUUUAGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUCAUACUGACUUUUCAAGUGAAAUCAUAGGAUACAAGGCUAUUGAUGGUGGUGUCACUCGUGACAAAAAUCUCUCUGACAGAGUCGUAUUUGUCUUAUGGGCACAUGGCUUUGAGUUGACAUCUAUGUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUGCACCAACAAAGGUUACUUUUGGUGAUGACACUGUGAUAGAAGUGCAAGGUUACAAGAGUGUGUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
96 | SARS-CoV-2構築體2.2_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCAUGUUUCAUCUCGUUGACUUUCAGGUUACUAUAGCAGAGAUAUUACUAAUUAUUAUGAGGACUGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUAUGAUGAUCUCAGCUGGCUUUAGCUUGUGGGUUUACAAACAAUUUGAUACUUAUAACCUCUGGGGCUUAGUUGCAGAGUGGUUUUUGGCAUAUAUUCUUUUCACUAGGUUUUUCUAUGUACUUGGAUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUUGUGCUGCCGGUACUACACAAACUGCUUGCACUGAUGACAAUGCGUUAGCUUACUACAACACAGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAGCAUUAUUAGCAGACAAAUUCCCAGUUCUUCACGACAUUGGUAACCCUAAAGCUAUUAAGUGUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGGUGUUUAUUCUGUUAUUUACUUGUACUUGACAUUUUAUCUUACUAAUGAUGUUUCUUUUUUACAUACUGACUUUUCAAGUGAAAUCAUAGGAUACAAGGCUAUUGAUGGUGGUGUCACUCGUGACCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGUUCCUGUUGUAGAUUCUUAUUAUUCAUUGUUAAUGCCUAUAUUAACCUUGACCAGGGCUUUAACAUCACAUACAGUAAUGCCAUUAAGUGCACCUACACUAGUGCCACAAGAGCACUAUGUUAGAGCAUCAGCAUUGUGGGAAAUCCAACAGGUUGUAGAUGCAGAUAGUAAAAUUGUUCAACUUAGUGAAAUUAGUAUGGACAAUUCACCUAAUUUAGCAUGGCCUCUUAUUACCGUUGAAGAGCUUAAAAAGCUCCUUGAACAAUGGAACCUAGUAAUAGGUUUCCUAUUCAGUCCAAGAUGGUAUUUCUACUACCUAGGAACUGGGCCAGAAGCUGGACUUCCCUAUGGUGCUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUAGUUUUAGUGGUUAUUUAAAACUUACUGACAAUGUAUACAUUAAAAAUGCAGACAUUGUGGAAGCACCAACAAAGGUUACUUUUGGUGAUGACACUGUGAUAGAAGUGCAAGGUUACAAGAGUGUGACUGAUUACAAACAUUGGCCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUAAAAAUCUCUCUGACAGAGUCGUAUUUGUCUUAUGGGCACAUGGCUUUGAGUUGACAUCUAUGAAGCACUAUGUGUACAUUGGCGACCCUGCUCAAUUACCUGCACCACGCACAUUGCUAACUAAGUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
97 | SARS-CoV-2構築體2.2.1_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCAUGUUUCAUCUCGUUGACUUUCAGGUUACUAUAGCAGAGAUAUUACUAAUUAUUAUGAGGACUGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUAUGAUGAUCUCAGCUGGCUUUAGCUUGUGGGUUUACAAACAAUUUGAUACUUAUAACCUCUGGGGCUUAGUUGCAGAGUGGUUUUUGGCAUAUAUUCUUUUCACUAGGUUUUUCUAUGUACUUGGAUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUUGUGCUGCCGGUACUACACAAACUGCUUGCACUGAUGACAAUGCGUUAGCUUACUACAACACAGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAGCAUUAUUAGCAGACAAAUUCCCAGUUCUUCACGACAUUGGUAACCCUAAAGCUAUUAAGUGUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGGUGUUUAUUCUGUUAUUUACUUGUACUUGACAUUUUAUCUUACUAAUGAUGUUUCUUUUUUACAUACUGACUUUUCAAGUGAAAUCAUAGGAUACAAGGCUAUUGAUGGUGGUGUCACUCGUGACUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
98 | SARS-CoV-2構築體2.2.2_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGUUCCUGUUGUAGAUUCUUAUUAUUCAUUGUUAAUGCCUAUAUUAACCUUGACCAGGGCUUUAACAUCACAUACAGUAAUGCCAUUAAGUGCACCUACACUAGUGCCACAAGAGCACUAUGUUAGAGCAUCAGCAUUGUGGGAAAUCCAACAGGUUGUAGAUGCAGAUAGUAAAAUUGUUCAACUUAGUGAAAUUAGUAUGGACAAUUCACCUAAUUUAGCAUGGCCUCUUAUUACCGUUGAAGAGCUUAAAAAGCUCCUUGAACAAUGGAACCUAGUAAUAGGUUUCCUAUUCAGUCCAAGAUGGUAUUUCUACUACCUAGGAACUGGGCCAGAAGCUGGACUUCCCUAUGGUGCUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUAGUUUUAGUGGUUAUUUAAAACUUACUGACAAUGUAUACAUUAAAAAUGCAGACAUUGUGGAAGCACCAACAAAGGUUACUUUUGGUGAUGACACUGUGAUAGAAGUGCAAGGUUACAAGAGUGUGACUGAUUACAAACAUUGGCCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUAAAAAUCUCUCUGACAGAGUCGUAUUUGUCUUAUGGGCACAUGGCUUUGAGUUGACAUCUAUGAAGCACUAUGUGUACAUUGGCGACCCUGCUCAAUUACCUGCACCACGCACAUUGCUAACUAAGUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
99 | SARS-CoV-2構築體2.3_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUAAUUUAAUUGAUUCUUACUUUGUAGUUAAGAGACACACUUUCUCUAACUACCAACAUGAAGAACCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAAUGUCGCGCAUUGGCAUGGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAUUAAUAAUUAAUCUUGUACAAAUGGCCCCGAUUUCAGCUAUGGUUAGAAUGUACAUCUUCUUUCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUCUGACUCUUGGUGUUUAUGAUUACUUAGUUUCUACACAGGAGUUUAGAUAUAUGAAUUCACAGGGACUACUCAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGGCUUAGUAGAAGUUGAAAAAGGCGUUUUGCCUCAACUUGAACAGCCCUAUGUGUUCAUCAAACAAUACAUAAGAAAGCUACAUGAUGAGUUAACAGGACACAUGUUAGACAUGUAUUCUGUUAUGUAUUUAAACACAUUAACAUUAGCUGUACCCUAUAAUAUGAGAGUUAUACAUUUUGGUGCUGGUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUUGUUCUGUUAUUGAUUUAUUACUUGAUGAUUUUGUUGAAAUAAUAAAAUCCCAAGAUUUAUCUCAAGUAGUGUCAGAUAUAGAUUAUGUACCACUAAAGUCUGCUACGUGUAUAACACGUUGCAAUAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUGAGCUUAAAGUUACAUUUUUCCCUGACUUAAAUGGUGAUGUGGUGGCUAUUGAUUAUAAACACUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
100 | SARS-CoV-2構築體2.4_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCCUGACUCUUGGUGUUUAUGAUUACUUAGUUUCUACACAGGAGUUUAGAUAUAUGAAUUCACAGGGACUACUCGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACUGUUCUGUUAUUGAUUUAUUACUUGAUGAUUUUGUUGAAAUAAUAAAAUCCCAAGAUUUAUCUCAAUACAUAAGAAAGCUACAUGAUGAGUUAACAGGACACAUGUUAGACAUGUAUUCUGUUAUGUUAACACCAGUUUACUCAUUCUUACCUGGUGUUUAUUCUGUUAUUUACUUGUACUUGACAUUUAAUUUAAUUGAUUCUUACUUUGUAGUUAAGAGACACACUUUCUCUAACUACCAACAUGAAGAAUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUUAUUUAAACACAUUAACAUUAGCUGUACCCUAUAAUAUGAGAGUUAUACAUUUUGGUGCUGGUCAUAUGGAAUUACCAACUGGAGUUCAUGCUGGCACAGACUUAGAAGGUAACUUUUAUGGACCUCAAGUAGUGUCAGAUAUAGAUUAUGUACCACUAAAGUCUGCUACGUGUAUAACACGUUGCAAUCAUCAUUCUAUUGGAUUUGAUUACGUCUAUAAUCCGUUUAUGAUUGAUGUUCAACAAUGGGGUCCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAAUGUCGCGCAUUGGCAUGAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUGGUGUCUCUAUCUGUAGUACUAUGACCAAUAGACAGUUUCAUCAAAAAUUAUUGAAAUCAAUACUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGGUUGGGAUUAUCCUAAAUGUGAUAGAGCCAUGCCUAACAUGCUUAGAAUUAUGGCCUCACUUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUUUUGCCUAUGCCAACAGGAAUAGGUUUUUGUAUAUAAUUAAGUUAAUUUUCCUCUGGCUGUUAGCAGCCAUGCAACGUAAGUUGGAAAAGAUGGCUGAUCAAGCUAUGACCCAAAUGUAUAAACAGUUAAUAAUUAAUCUUGUACAAAUGGCCCCGAUUUCAGCUAUGGUUAGAAUGUACAUCUUCUUUGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUACCUCAUCAGGAGAUGCCACAACUGCUUAUGCUAAUAGUGUUUUUAACAUUUGUCAAGCUGUCGUCUUUGAUGAAAUUUCAAUGGCCACAAAUUAUGAUUUGAGUGUUGUCAAUGCCAGAUUACGUGAGCUUAAAGUUACAUUUUUCCCUGACUUAAAUGGUGAUGUGGUGGCUAUUGAUUAUAAACACGGCUUAGUAGAAGUUGAAAAAGGCGUUUUGCCUCAACUUGAACAGCCCUAUGUGUUCAUCAAAUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
101 | SARS-CoV-2構築體2.4.1_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCCUGACUCUUGGUGUUUAUGAUUACUUAGUUUCUACACAGGAGUUUAGAUAUAUGAAUUCACAGGGACUACUCGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACUGUUCUGUUAUUGAUUUAUUACUUGAUGAUUUUGUUGAAAUAAUAAAAUCCCAAGAUUUAUCUCAAUACAUAAGAAAGCUACAUGAUGAGUUAACAGGACACAUGUUAGACAUGUAUUCUGUUAUGUUAACACCAGUUUACUCAUUCUUACCUGGUGUUUAUUCUGUUAUUUACUUGUACUUGACAUUUAAUUUAAUUGAUUCUUACUUUGUAGUUAAGAGACACACUUUCUCUAACUACCAACAUGAAGAAUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUUAUUUAAACACAUUAACAUUAGCUGUACCCUAUAAUAUGAGAGUUAUACAUUUUGGUGCUGGUCAUAUGGAAUUACCAACUGGAGUUCAUGCUGGCACAGACUUAGAAGGUAACUUUUAUGGACCUCAAGUAGUGUCAGAUAUAGAUUAUGUACCACUAAAGUCUGCUACGUGUAUAACACGUUGCAAUCAUCAUUCUAUUGGAUUUGAUUACGUCUAUAAUCCGUUUAUGAUUGAUGUUCAACAAUGGGGUCCGCAAAUUGCACAAUUUGCCCCCAGCGCUUCAGCGUUCUUCGGAAUGUCGCGCAUUGGCAUGAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUGGUGUCUCUAUCUGUAGUACUAUGACCAAUAGACAGUUUCAUCAAAAAUUAUUGAAAUCAAUAUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
102 | SARS-CoV-2構築體2.4.2_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGGUUGGGAUUAUCCUAAAUGUGAUAGAGCCAUGCCUAACAUGCUUAGAAUUAUGGCCUCACUUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUUUUGCCUAUGCCAACAGGAAUAGGUUUUUGUAUAUAAUUAAGUUAAUUUUCCUCUGGCUGUUAGCAGCCAUGCAACGUAAGUUGGAAAAGAUGGCUGAUCAAGCUAUGACCCAAAUGUAUAAACAGUUAAUAAUUAAUCUUGUACAAAUGGCCCCGAUUUCAGCUAUGGUUAGAAUGUACAUCUUCUUUGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUACCUCAUCAGGAGAUGCCACAACUGCUUAUGCUAAUAGUGUUUUUAACAUUUGUCAAGCUGUCGUCUUUGAUGAAAUUUCAAUGGCCACAAAUUAUGAUUUGAGUGUUGUCAAUGCCAGAUUACGUGAGCUUAAAGUUACAUUUUUCCCUGACUUAAAUGGUGAUGUGGUGGCUAUUGAUUAUAAACACGGCUUAGUAGAAGUUGAAAAAGGCGUUUUGCCUCAACUUGAACAGCCCUAUGUGUUCAUCAAAUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
103 | SARS-CoV-2構築體2.5_DCL | AUGGCCGCUCCAGGUAGUGCAAGGAGACCACUUCUCCUUUUGCUGCUGCUUCUUUUGCUCGGCCUGAUGCAUUGCGCUAGUGCAGCCCUGUGCACCUUUUUGUUAAAUAAAGAAAUGUAUCUAAAGUUGCGUAGUGAUGUGCUAUUACCUAAAAUAUUUGUUGAUGGUGUUCCAUUUGUAGUUUCAACUGGAUACCACUUCAGAGAGCUAGGUUCAGCUGGUUUUCCAUUUAAUAAAUGGGGUAAGGCUAGACUUUAUUAUGAUUCAAUGAGUUAUGACAUCAAGGACCUGCCUAAAGAAAUCACUGUUGCUACAUCACGAACGCUUUCUUAUUACAAAGGUACACUUAUGAUUGAACGGUUCGUGUCUUUAGCUAUAGAUGCUUACCCACUUACUAAACAUGAAUUGUUUGAAAAUAAAACAACAUUACCUGUUAAUGUAGCAUUUGAGCUUUGGGCUAAGCGCGCCUCAAAGAUUUUGGGACUACCAACUCAAACUGUUGAUUCAUCACAGGGCUCAGAAUAUGACAAGCUUUUUGCAGCAGAAACGCUCAAAGCUACUGAGGAGACAUUUAAACUGUCUUAUGGUAUUAUAUCACGUCAACGUCUUACUAAAUACACAAUGGCAGACCUCGUCUAUGCUUUAAGGCAUUUUAUGUACUCAUUCGUUUCGGAAGAGACAGGUACGUUAAUAGUUAAUAGCGUACUUCUUUUUCUUUCAUCUGAUUAUACGAUUGUGCUGCCAGUGAUUGGCGCAAUCGUAGUUGGACUGUGUCUGAUGGGCAUGGGGGUAUACAAAAUCAGGUUGCGCUGUCAGUCUUCCGGUUACCAACGCAUUUGA |
於本發明之前後文中,上表之RNA序列亦可以相對應的DNA序列置換,其中於如本文中定義的序列中「U」以「T」置換。
表 4 :多表位構築體之密碼子經優化 RNA 序列。( _opt1 ; _opt2 ; _opt3 係指相同構築體之三種經不同密碼子優化的序列)。
表 5 : SARS-CoV-2 棘醣蛋白構築體之密碼子經優化 RNA 序列。( _opt1 ; _opt2 係指相同構築體之二種經不同密碼子優化的序列)。
參考文獻
SEQ ID | 名稱 | 序列 |
104 | SARS-CoV-2_concat_2.1_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCAUUGUGCCUCUGCCGCCAUGUUCCACCUGGUGGACUUCCAAGUGACAAUCGCCGAGAUCCUGCUGAUCAUCAUGCGGACCCUGUGCACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCUAUCAGCAGACAGCGGCUGACCAAGUACACCAUGGCCGAUCUGGUGUACGCCCUGAGACACUUCACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUUGCCCCUUCUGCCAGCGCCUUCUUCGGCGACAUUAAGGACCUCCCUAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUACAAGGCUAGCGCCCUGUGGGAGAUCCAGCAGGUUGUGGAUGCCGACAGCAAGAUCGUGCAGCUGAGCGAGAUCAGCAUGGACAACAGCCCCAAUCUGGCCUGGCCUCUGAAGCACUACGUGUACAUCGGCGACCCUGCACAGCUGCCCGCUCCUAGAACACUGCUGACAAAGGCCUCCAAGAUCCUGGGCCUGCCUACACAGACCGUGGAUAGCUCUCAGGGCAGCGAGUACGACAUGUACAGCUUCGUGUCCGAGGAAACCGGCACACUGAUCGUGAACUCUGUCCUGCUGUUUCUGGCCCUGCUGGCCGACAAGUUUCCUGUGCUGCACGACAUCGGCAACCCCAAGGCCAUUAAGUGCGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCCAAACGCGCCGGAUUUUCCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGAACACCUUCACCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGUCCUUCCUGGGCACCCUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCUACCGGCUACCACUUUAGAGAGCUGGGCCACACCGACUUCAGCUCCGAGAUCAUCGGCUACAAGGCCAUCGACGGCGGCGUGACCAGAGACAAGAACCUGAGCGACAGAGUGGUGUUCGUGCUGUGGGCUCACGGAUUCGAGCUGACCUCUAUGAGCGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACGCCCCUACCAAAGUGACCUUUGGCGACGACACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGUCCAGCGACUACACCAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGUCCAGCGGCUACCAGAGAAUCUGA |
105 | SARS-CoV-2_concat_2.1_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCAUGUUCCACCUGGUGGACUUCCAGGUGACCAUCGCCGAGAUCCUGCUGAUCAUCAUGCGCACCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGGCCAGCGCCCUGUGGGAGAUCCAGCAGGUGGUGGACGCCGACAGCAAGAUCGUGCAGCUGAGCGAGAUCAGCAUGGACAACAGCCCCAACCUGGCCUGGCCCCUGAAGCACUACGUGUACAUCGGCGACCCCGCCCAGCUGCCCGCCCCCCGCACCCUGCUGACCAAGGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGCCCUGCUGGCCGACAAGUUCCCCGUGCUGCACGACAUCGGCAACCCCAAGGCCAUCAAGUGCGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGCCGGCUUCAGCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGAACACCUUCACCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGAGCUUCCUGGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCCACACCGACUUCAGCAGCGAGAUCAUCGGCUACAAGGCCAUCGACGGCGGCGUGACCCGCGACAAGAACCUGAGCGACCGCGUGGUGUUCGUGCUGUGGGCCCACGGCUUCGAGCUGACCAGCAUGAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACGCCCCCACCAAGGUGACCUUCGGCGACGACACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
106 | SARS-CoV-2_concat_2.1_DCL_opt3 | AUGGCUGCCCCAGGCUCUGCAAGGCGGCCUCUGCUGCUGCUGUUGCUGCUGCUGCUGCUGGGACUGAUGCACUGCGCAUCUGCCGCCAUGUUCCACCUGGUGGACUUCCAGGUGACAAUCGCUGAGAUCUUGCUGAUCAUCAUGAGAACCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGAGGAGCGACGUGCUGCUCCCUAUUUCCAGACAGAGACUGACAAAAUAUACAAUGGCCGAUCUGGUGUACGCCCUGCGGCAUUUUACCGAUUACAAGCACUGGCCCCAGAUCGCCCAGUUCGCCCCUAGCGCCAGCGCCUUUUUCGGGGACAUUAAGGACCUCCCUAAAGAGAUCACUGUGGCCACCUCAAGGACCCUGUCUUACUACAAGGCCAGCGCACUGUGGGAAAUUCAGCAGGUGGUGGACGCCGACUCUAAGAUCGUGCAGCUGUCCGAGAUUAGCAUGGAUAAUUCACCCAAUCUGGCCUGGCCCCUGAAACACUACGUGUACAUCGGCGAUCCCGCCCAGCUGCCCGCCCCCCGCACCCUUCUGACAAAAGCUUCUAAGAUCCUGGGCCUGCCUACACAGACUGUGGACAGCUCACAGGGGAGCGAGUACGAUAUGUACUCUUUCGUGAGCGAGGAGACAGGCACCCUGAUUGUGAACAGCGUGCUGCUGUUCCUGGCCCUGCUGGCCGAUAAGUUUCCCGUGCUGCACGACAUUGGCAACCCCAAGGCCAUCAAAUGCGAACUGUUCGAGAACAAGACCACUCUGCCCGUGAAUGUGGCCUUUGAGCUGUGGGCUAAAAGAGCCGGCUUCUCCCUGUGGGUGUACAAGCAGUUUGACACCUACAACCUGUGGAACACCUUUACAGGAGUCUACUCCGUGAUCUACCUGUACCUGACCUUCUAUCUGACAAACGACGUGAGCUUUCUGGGAACACUGAUGAUCGAGAGAUUCGUGAGCCUGGCGAUCGACGCCUACCCCCUGACCAAGCACAAAAUUUUCGUCGACGGGGUGCCCUUCGUGGUGUCCACAGGCUACCACUUCAGAGAACUGGGCCACACAGAUUUUUCCAGUGAGAUUAUCGGCUACAAGGCUAUUGACGGCGGAGUGACAAGAGAUAAGAAUCUGUCUGAUAGGGUGGUGUUCGUGCUGUGGGCCCACGGAUUUGAGCUGACCUCUAUGUCAGCCGGAUUCCCUUUUAACAAAUGGGGCAAGGCUCGGCUGUACUACGACUCAAUGUCCUACGCCCCCACCAAGGUGACAUUCGGCGAUGACACAGUGAUCGAGGUGCAGGGAUACAAGUCCGUGUCUAGCGACUAUACAAUUGUGCUCCCUGUGAUCGGCGCCAUCGUGGUGGGGCUGUGCCUCAUGGGCAUGGGCGUGUAUAAAAUCCGGCUGAGAUGUCAGAGCAGCGGCUAUCAGCGUAUCUAG |
107 | SARS-CoV-2_concat_2.2_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCAUUGUGCCUCUGCCGCCAUGUUCCACCUGGUGGACUUCCAAGUGACAAUCGCCGAGAUCCUGCUGAUCAUCAUGCGGACCGGCACACUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCUACCGGCUACCACUUCAGAGAACUGGGAAUGAUGAUCUCCGCCGGCUUCAGCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGGGCCUCGUGGCCGAAUGGUUCCUGGCCUACAUCCUGUUCACCCGGUUCUUCUACGUGCUGGGCUCUGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACUGUGCCGCCGGAACCACACAGACCGCCUGCACAGAUGAUAACGCCCUGGCCUAUUACAACACCGCCAGCAAGAUCCUGGGCCUGCCUACACAGACAGUGGAUAGCUCUCAGGGCAGCGAGUACGACGACAUCAAGGACCUCCCUAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUAUAAGGCCCUGCUGGCCGACAAGUUCCCCGUGCUGCACGAUAUCGGCAACCCCAAGGCCAUCAAGUGCGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCUAAACGGGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGUCCUUCCUGCACACCGACUUCAGCAGCGAGAUCAUCGGCUACAAGGCCAUUGAUGGCGGCGUGACCAGAGAUCUGUGCACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCCAUGUACAGCUUUGUGUCCGAGGAAACAGGCACCCUGAUCGUGAACUCUGUCCUGCUGUUCCUGGUGCCUGUGGUGGACAGCUACUACAGCCUGCUGAUGCCCAUCCUGACACUGACAAGAGCCCUGACCAGCCACACCGUGAUGCCUCUGUCUGCUCCUACACUGGUGCCCCAAGAGCACUAUGUGCGGGCAUCUGCCCUGUGGGAGAUCCAGCAAGUGGUGGACGCCGACUCCAAGAUUGUGCAGCUGAGCGAGAUCUCCAUGGACAACAGCCCCAAUCUGGCCUGGCCUCUGAUCACAGUGGAAGAACUGAAGAAACUGCUGGAACAGUGGAACCUCGUGAUCGGCUUCCUGUUCAGCCCCAGAUGGUACUUCUACUACCUCGGCACAGGACCCGAAGCCGGACUUCCUUAUGGCGCUAUCUCCCGGCAGCGGCUGACCAAGUAUACCAUGGCCGAUCUGGUGUACGCCCUGCGGCACUUUAGCUUCAGCGGCUAUCUGAAGCUGACCGACAACGUGUACAUCAAGAACGCCGACAUCGUGGAAGCCCCUACCAAAGUGACCUUCGGCGACGAUACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUUGCCCCUUCUGCCAGCGCCUUCUUCGGCAAGCUGUUUGCCGCCGAGACACUGAAGGCCACCGAAGAGACAUUCAAGCUGAGCUACGGCAUCAAGAAUCUGAGCGACAGAGUGGUGUUCGUGCUGUGGGCCCAUGGAUUCGAGCUGACCAGCAUGAAGCACUACGUCUACAUCGGCGACCCCGCACAACUGCCCGCUCCUAGAACACUGCUGACCAAAAGCAGCGACUACACCAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGUCCAGCGGCUACCAGAGAAUCUGA |
108 | SARS-CoV-2_concat_2.2_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCAUGUUCCACCUGGUGGACUUCCAGGUGACCAUCGCCGAGAUCCUGCUGAUCAUCAUGCGCACCGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCAUGAUGAUCAGCGCCGGCUUCAGCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGGGCCUGGUGGCCGAGUGGUUCCUGGCCUACAUCCUGUUCACCCGCUUCUUCUACGUGCUGGGCAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACUGCGCCGCCGGCACCACCCAGACCGCCUGCACCGACGACAACGCCCUGGCCUACUACAACACCGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGGCCCUGCUGGCCGACAAGUUCCCCGUGCUGCACGACAUCGGCAACCCCAAGGCCAUCAAGUGCGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGAGCUUCCUGCACACCGACUUCAGCAGCGAGAUCAUCGGCUACAAGGCCAUCGACGGCGGCGUGACCCGCGACCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGUGCCCGUGGUGGACAGCUACUACAGCCUGCUGAUGCCCAUCCUGACCCUGACCCGCGCCCUGACCAGCCACACCGUGAUGCCCCUGAGCGCCCCCACCCUGGUGCCCCAGGAGCACUACGUGCGCGCCAGCGCCCUGUGGGAGAUCCAGCAAGUGGUGGACGCCGACAGCAAGAUCGUGCAGCUGAGCGAGAUCAGCAUGGACAACAGCCCCAACCUGGCCUGGCCCCUGAUCACCGUGGAGGAGCUGAAGAAGCUGCUGGAGCAGUGGAACCUGGUGAUCGGCUUCCUGUUCAGCCCCCGCUGGUACUUCUACUACCUGGGCACCGGCCCCGAGGCCGGCCUGCCCUACGGCGCCAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCAGCUUCAGCGGCUACCUGAAGCUGACCGACAACGUGUACAUCAAGAACGCCGACAUCGUGGAGGCCCCCACCAAGGUGACCUUCGGCGACGACACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCAAGAACCUGAGCGACCGCGUGGUGUUCGUGCUGUGGGCCCACGGCUUCGAGCUGACCAGCAUGAAGCACUACGUGUACAUCGGCGACCCCGCCCAGCUGCCCGCCCCCCGCACCCUGCUGACCAAGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
109 | SARS-CoV-2_concat_2.2_DCL_opt3 | AUGGCCGCCCCAGGGAGCGCCCGCAGGCCUCUGCUGCUGCUGCUGCUGCUGCUCCUGCUGGGCCUGAUGCAUUGUGCCAGCGCCGCCAUGUUCCACCUGGUGGACUUUCAGGUGACCAUUGCCGAGAUCCUGCUGAUCAUCAUGCGGACCGGAACUCUGAUGAUCGAGAGGUUUGUGUCUCUGGCAAUCGAUGCUUACCCAUUGACCAAACACAAGAUUUUCGUGGAUGGCGUGCCCUUCGUGGUCUCAACCGGCUAUCACUUUAGAGAGCUGGGAAUGAUGAUCUCCGCCGGCUUCAGCCUGUGGGUCUACAAGCAGUUCGACACUUACAAUCUGUGGGGGCUGGUCGCCGAGUGGUUCCUGGCUUACAUCCUGUUCACACGCUUCUUCUACGUGCUGGGCUCUGCCGGCUUUCCCUUCAAUAAGUGGGGCAAGGCUAGACUGUACUAUGAUUCCAUGAGCUACUGUGCAGCCGGCACUACACAGACCGCCUGCACAGACGAUAAUGCACUGGCCUACUAUAACACAGCCUCCAAGAUCCUGGGCCUGCCUACUCAGACCGUGGACAGUAGUCAGGGCUCUGAGUACGACGAUAUCAAGGAUCUGCCCAAAGAGAUCACGGUGGCCACAUCCAGAACACUCAGCUACUACAAGGCCCUGCUGGCAGAUAAAUUCCCAGUGCUGCACGACAUCGGUAACCCUAAGGCCAUUAAAUGCGAGCUGUUCGAAAACAAGACAACCCUGCCCGUGAACGUGGCUUUCGAGCUGUGGGCCAAGAGGGGGGUGUAUUCUGUGAUCUACCUGUACCUGACAUUCUACCUGACAAAUGACGUCAGCUUCCUGCACACUGAUUUUUCCAGCGAGAUUAUCGGCUAUAAGGCCAUUGAUGGCGGCGUGACACGCGAUCUGUGCACCUUCCUGCUGAAUAAGGAAAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCAAUGUACAGUUUUGUGAGCGAGGAGACGGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGUGCCAGUGGUGGACUCAUAUUACAGCCUGCUGAUGCCUAUCCUUACCCUGACACGCGCUCUGACUUCUCACACCGUGAUGCCUCUCUCCGCCCCAACCCUCGUGCCACAGGAGCAUUAUGUGCGGGCAUCAGCACUGUGGGAAAUCCAGCAAGUGGUGGAUGCCGACAGCAAGAUCGUGCAGCUGUCCGAAAUUAGCAUGGAUAACUCACCCAAUCUGGCCUGGCCCCUGAUUACCGUGGAGGAGCUGAAGAAGCUGCUGGAGCAGUGGAAUCUGGUGAUCGGGUUCCUGUUUUCUCCUAGGUGGUAUUUUUACUAUCUGGGCACCGGCCCCGAGGCCGGCCUGCCUUACGGAGCCAUCAGCCGCCAGCGCCUGACUAAGUAUACCAUGGCCGAUCUGGUGUACGCCCUGAGACACUUCUCAUUCAGCGGAUAUCUGAAGCUGACCGACAACGUGUACAUCAAAAACGCUGAUAUCGUGGAGGCCCCUACCAAGGUGACCUUCGGAGACGAUACAGUGAUCGAAGUGCAGGGGUACAAGUCCGUGACCGAUUACAAGCACUGGCCGCAGAUCGCUCAGUUCGCCCCCAGCGCCAGCGCCUUCUUUGGGAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACAGAAGAGACUUUUAAGCUUUCUUAUGGGAUUAAAAACCUGAGCGACCGGGUGGUGUUUGUGCUGUGGGCCCACGGCUUCGAGCUGACCUCUAUGAAACACUACGUGUACAUUGGAGACCCCGCCCAGCUGCCUGCCCCCCGCACCUUGCUGACCAAGAGCAGCGACUACACCAUUGUGCUGCCAGUGAUAGGGGCCAUUGUGGUGGGACUCUGCCUUAUGGGCAUGGGCGUGUACAAGAUCCGGCUGCGCUGCCAGUCUAGCGGAUACCAGAGAAUCUGA |
110 | SARS-CoV-2_concat_2.2.1_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCAUUGUGCCUCUGCCGCCAUGUUCCACCUGGUGGACUUCCAAGUGACAAUCGCCGAGAUCCUGCUGAUCAUCAUGCGGACCGGCACACUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCUACCGGCUACCACUUCAGAGAACUGGGAAUGAUGAUCUCCGCCGGCUUCAGCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGGGCCUCGUGGCCGAAUGGUUCCUGGCCUACAUCCUGUUCACCCGGUUCUUCUACGUGCUGGGCUCUGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACUGUGCCGCCGGAACCACACAGACCGCCUGCACAGAUGAUAACGCCCUGGCCUAUUACAACACCGCCAGCAAGAUCCUGGGCCUGCCUACACAGACAGUGGAUAGCUCUCAGGGCAGCGAGUACGACGACAUCAAGGACCUCCCUAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUAUAAGGCCCUGCUGGCCGACAAGUUCCCCGUGCUGCACGAUAUCGGCAACCCCAAGGCCAUCAAGUGCGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCUAAACGGGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGUCCUUCCUGCACACCGACUUCAGCAGCGAGAUCAUCGGCUACAAGGCCAUUGAUGGCGGCGUGACCAGAGACAGCAGCGACUACACUAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGAGCAGCGGCUACCAGAGAAUCUGA |
111 | SARS-CoV-2_concat_2.2.1_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCAUGUUCCACCUGGUGGACUUCCAGGUGACCAUCGCCGAGAUCCUGCUGAUCAUCAUGCGCACCGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCAUGAUGAUCAGCGCCGGCUUCAGCCUGUGGGUGUACAAGCAGUUCGACACCUACAACCUGUGGGGCCUGGUGGCCGAGUGGUUCCUGGCCUACAUCCUGUUCACCCGCUUCUUCUACGUGCUGGGCAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACUGCGCCGCCGGCACCACCCAGACCGCCUGCACCGACGACAACGCCCUGGCCUACUACAACACCGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGGCCCUGCUGGCCGACAAGUUCCCCGUGCUGCACGACAUCGGCAACCCCAAGGCCAUCAAGUGCGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCUACCUGACCAACGACGUGAGCUUCCUGCACACCGACUUCAGCAGCGAGAUCAUCGGCUACAAGGCCAUCGACGGCGGCGUGACCCGCGACAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
112 | SARS-CoV-2_concat_2.2.1_DCL_opt3 | AUGGCCGCUCCAGGCAGCGCCCGGCGCCCUCUGCUGUUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCAUUGCGCCUCUGCCGCCAUGUUCCACCUGGUGGACUUCCAGGUGACCAUUGCCGAGAUUCUGCUGAUUAUCAUGAGGACCGGCACACUGAUGAUCGAGAGAUUCGUCUCUCUGGCCAUCGACGCUUACCCUCUGACAAAACACAAGAUCUUCGUGGAUGGGGUGCCCUUCGUGGUGUCUACCGGGUACCACUUCAGGGAGCUGGGAAUGAUGAUCUCCGCCGGCUUCAGCCUGUGGGUCUACAAACAGUUCGACACAUACAACCUGUGGGGCCUGGUGGCAGAGUGGUUUCUCGCCUACAUCCUGUUCACCAGAUUCUUCUAUGUGCUGGGCUCAGCUGGCUUUCCAUUCAAUAAAUGGGGCAAAGCCCGGCUGUAUUACGACAGCAUGAGCUACUGCGCUGCCGGAACCACACAGACAGCCUGCACCGACGAUAAUGCCCUGGCCUACUACAACACCGCUAGCAAGAUUCUGGGCCUGCCUACACAGACUGUGGAUAGCAGCCAGGGGAGCGAGUACGACGACAUCAAGGAUCUGCCUAAGGAGAUCACAGUGGCCACCAGCAGGACCCUGAGCUACUACAAGGCCCUGCUGGCCGAUAAGUUUCCAGUGCUGCACGACAUUGGCAACCCUAAGGCCAUCAAGUGUGAACUGUUCGAAAACAAGACCACCCUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCUAAGCGCGGCGUGUACUCCGUGAUCUAUCUCUAUCUGACCUUUUACCUGACCAAUGACGUGAGCUUCCUGCACACCGACUUUUCCUCCGAGAUCAUUGGCUACAAAGCCAUCGAUGGCGGCGUCACCAGGGACAGCUCUGAUUACACUAUCGUGCUGCCUGUGAUCGGCGCUAUCGUGGUGGGCCUGUGUUUGAUGGGCAUGGGAGUGUAUAAGAUUAGGCUUAGGUGUCAGUCCAGCGGCUACCAGAGAAUCUAA |
113 | SARS-CoV-2_concat_2.2.2_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCACUGUGCCUCUGCAGCCCUGUGUACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCCAUGUACAGCUUUGUGUCCGAGGAAACCGGCACACUGAUCGUGAACUCUGUCCUGCUGUUCCUGGUGCCUGUGGUGGACAGCUACUACAGCCUGCUGAUGCCCAUCCUGACACUGACAAGAGCCCUGACCAGCCACACCGUGAUGCCUCUGUCUGCUCCUACACUGGUGCCCCAAGAGCACUAUGUGCGGGCAUCUGCCCUGUGGGAGAUCCAGCAAGUGGUGGACGCCGACAGCAAGAUCGUGCAGCUGAGCGAGAUCAGCAUGGACAACAGCCCCAAUCUGGCCUGGCCUCUGAUCACCGUGGAAGAACUGAAGAAACUGCUGGAACAGUGGAACCUCGUGAUCGGCUUCCUGUUCAGCCCCAGAUGGUACUUCUACUACCUCGGCACAGGACCCGAAGCCGGACUUCCUUAUGGCGCUAUCUCCCGGCAGCGGCUGACCAAGUAUACCAUGGCCGAUCUGGUGUACGCCCUGCGGCACUUUAGCUUCAGCGGCUAUCUGAAGCUGACCGACAACGUGUACAUCAAGAACGCCGACAUCGUGGAAGCCCCUACCAAAGUGACCUUCGGCGACGAUACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUUGCCCCUUCUGCCUCUGCCUUCUUCGGCAAGCUGUUUGCCGCCGAGACACUGAAGGCCACCGAAGAGACAUUCAAGCUGAGCUACGGCAUCAAGAAUCUGAGCGACAGAGUGGUGUUCGUGCUGUGGGCCCAUGGCUUUGAGCUGACCAGCAUGAAGCACUACGUCUACAUCGGCGACCCCGCACAACUGCCCGCUCCUAGAACACUGCUGACCAAAAGCAGCGACUACACCAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGCGUGUACAAGAUCCGGCUGAGAUGCCAGUCUAGCGGCUACCAGAGAAUCUGA |
114 | SARS-CoV-2_concat_2.2.2_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGUGCCCGUGGUGGACAGCUACUACAGCCUGCUGAUGCCCAUCCUGACCCUGACCCGCGCCCUGACCAGCCACACCGUGAUGCCCCUGAGCGCCCCCACCCUGGUGCCCCAGGAGCACUACGUGCGCGCCAGCGCCCUGUGGGAGAUCCAGCAAGUGGUGGACGCCGACAGCAAGAUCGUGCAGCUGAGCGAGAUCAGCAUGGACAACAGCCCCAACCUGGCCUGGCCCCUGAUCACCGUGGAGGAGCUGAAGAAGCUGCUGGAGCAGUGGAACCUGGUGAUCGGCUUCCUGUUCAGCCCCCGCUGGUACUUCUACUACCUGGGCACCGGCCCCGAGGCCGGCCUGCCCUACGGCGCCAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCAGCUUCAGCGGCUACCUGAAGCUGACCGACAACGUGUACAUCAAGAACGCCGACAUCGUGGAGGCCCCCACCAAGGUGACCUUCGGCGACGACACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGACCGACUACAAGCACUGGCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCAAGAACCUGAGCGACCGCGUGGUGUUCGUGCUGUGGGCCCACGGCUUCGAGCUGACCAGCAUGAAGCACUACGUGUACAUCGGCGACCCCGCCCAGCUGCCCGCCCCCCGCACCCUGCUGACCAAGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
115 | SARS-CoV-2_concat_2.2.2_DCL_opt3 | AUGGCCGCCCCAGGCUCUGCCAGAAGACCUCUGCUGCUGUUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCAAGUGCCGCCCUGUGUACUUUUCUGCUGAACAAAGAGAUGUAUCUGAAACUGAGAUCUGACGUGCUGCUGCCAAUGUACUCUUUUGUGAGCGAGGAGACAGGAACACUGAUCGUGAAUAGUGUGCUGCUGUUUCUGGUGCCCGUGGUGGACAGCUAUUACUCCCUCCUGAUGCCCAUCCUGACACUGACCCGAGCCCUCACCAGCCACACAGUGAUGCCUCUGUCUGCCCCCACCCUGGUGCCACAGGAACACUACGUGCGGGCCUCUGCACUGUGGGAGAUCCAGCAAGUGGUGGAUGCCGAUAGCAAGAUUGUCCAGCUGUCAGAGAUCAGCAUGGACAAUUCCCCUAAUCUGGCAUGGCCACUGAUCACAGUGGAGGAGCUGAAAAAGCUGCUGGAGCAGUGGAACCUGGUGAUUGGCUUCCUGUUCUCCCCCAGGUGGUAUUUCUAUUAUCUGGGGACCGGCCCUGAGGCCGGCCUGCCCUAUGGCGCCAUUAGCAGGCAGAGGCUGACCAAAUACACAAUGGCCGACCUGGUGUACGCUCUGAGACAUUUUUCCUUCUCCGGGUACCUGAAGCUGACUGACAAUGUGUACAUUAAGAACGCCGACAUCGUGGAGGCUCCUACCAAGGUCACAUUUGGAGACGACACCGUGAUCGAGGUGCAGGGCUACAAGAGCGUGACAGAUUACAAACACUGGCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCUCCGCCUUCUUUGGGAAGCUGUUCGCCGCUGAGACACUGAAGGCCACCGAGGAGACCUUCAAACUGUCUUACGGGAUCAAGAAUCUGUCGGAUAGGGUGGUGUUUGUGCUGUGGGCUCACGGGUUCGAACUGACAUCCAUGAAGCACUACGUGUACAUAGGGGACCCCGCCCAGCUGCCCGCCCCCAGGACGCUCCUGACCAAAUCCUCAGACUAUACCAUCGUGCUGCCUGUGAUCGGGGCCAUUGUGGUGGGACUGUGCCUGAUGGGCAUGGGCGUCUACAAGAUCCGGCUGAGAUGCCAGAGCUCCGGCUAUCAGCGCAUCUGA |
116 | SARS-CoV-2_concat_2.3_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCAUUGUGCCUCUGCAGCCUCUGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACAACCUGAUCGACAGCUACUUCGUGGUCAAGCGGCACACCUUCAGCAACUACCAGCACGAGGAACCCCAGAUCGCCCAGUUUGCCCCUUCUGCCUCUGCCUUCUUCGGCAUGAGCAGAAUCGGCAUGGACAUCAAGGACCUCCCUAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUACAAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCUAUCAGCGCCAUGGUCCGAAUGUACAUCUUCUUUCUGUGCACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCUGCCUCUAAGAUUCUGGGCCUGCCUACACAGACCGUGGAUAGCUCUCAGGGCAGCGAGUACGACAUCAGCAGACAGCGGCUGACCAAGUACACCAUGGCCGAUCUGGUGUACGCCCUGAGACACUUCGGCACCCUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACCUGACACUGGGCGUGUACGACUACCUGGUGUCUACCCAAGAGUUCCGGUACAUGAACAGCCAGGGCCUGCUCAUGUACAGCUUCGUGUCCGAGGAAACCGGCACACUGAUCGUGAACUCUGUGCUGCUGUUCCUGGGCCUCGUGGAAGUGGAAAAAGGCGUGCUGCCUCAGCUGGAACAGCCCUACGUGUUCAUCAAGCAGUACAUCCGGAAGCUGCACGACGAGCUGACAGGCCACAUGCUGGACAUGUACUCCGUGAUGUAUCUGAACACACUGACCCUGGCCGUGCCUUACAACAUGAGAGUGAUCCACUUCGGAGCCGGCGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCCAAGAGAAAGCUGUUCGCCGCCGAGACACUGAAGGCCACCGAAGAGACAUUCAAGCUGAGCUACGGCAUCUGCAGCGUGAUCGACCUCCUGCUCGACGACUUCGUGGAAAUCAUCAAGAGCCAGGACCUGAGCCAGGUGGUGUCCGACAUCGAUUACGUGCCCCUGAAGUCCGCCACCUGUAUCACCCGGUGCAACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCCACAGGCUACCACUUUAGAGAGCUGGGCGAGCUGAAAGUGACCUUCUUUCCCGACCUGAACGGCGACGUGGUGGCCAUCGAUUAUAAGCACAGCAGCGACUACACCAUCGUGCUGCCAGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGUCCAGCGGCUACCAGAGAAUCUGA |
117 | SARS-CoV-2_concat_2.3_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACAACCUGAUCGACAGCUACUUCGUGGUGAAGCGCCACACCUUCAGCAACUACCAGCACGAGGAGCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCAUGAGCCGCAUCGGCAUGGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCCAUCAGCGCCAUGGUGCGCAUGUACAUCUUCUUCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACCUGACCCUGGGCGUGUACGACUACCUGGUGAGCACCCAGGAGUUCCGCUACAUGAACAGCCAGGGCCUGCUGAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGGCCUGGUGGAGGUGGAGAAGGGCGUGCUGCCCCAGCUGGAGCAGCCCUACGUGUUCAUCAAGCAGUACAUCCGCAAGCUGCACGACGAGCUGACCGGCCACAUGCUGGACAUGUACAGCGUGAUGUACCUGAACACCCUGACCCUGGCCGUGCCCUACAACAUGCGCGUGAUCCACUUCGGCGCCGGCGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCUGCAGCGUGAUCGACCUCCUGCUGGACGACUUCGUGGAGAUCAUCAAGAGCCAGGACCUGAGCCAGGUGGUGAGCGACAUCGACUACGUGCCCCUGAAGAGCGCCACCUGUAUCACCCGCUGCAACAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCGAGCUGAAGGUGACCUUCUUCCCCGACCUGAACGGCGACGUGGUGGCCAUCGACUACAAGCACAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
118 | SARS-CoV-2_concat_2.3_DCL_opt3 | AUGGCCGCCCCUGGCUCCGCCAGACGGCCACUGCUUCUCUUGCUGCUGCUGCUGCUGCUGGGGCUGAUGCACUGUGCCUCCGCCGCCAGCGCCGGCUUCCCCUUUAACAAGUGGGGCAAGGCCAGGCUGUACUAUGAUUCCAUGAGCUACAACCUGAUCGACUCCUACUUCGUGGUGAAAAGACACACCUUCAGCAAUUACCAGCACGAAGAGCCUCAGAUCGCUCAGUUCGCCCCAAGCGCCUCUGCAUUCUUCGGGAUGUCCCGCAUCGGCAUGGAUAUCAAGGAUCUGCCCAAGGAAAUCACCGUGGCCACCAGUAGGACCCUGAGCUACUAUAAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCUAUCAGCGCUAUGGUGCGGAUGUACAUUUUUUUCCUGUGCACCUUUCUGCUAAACAAGGAGAUGUACCUGAAGCUGAGAAGCGAUGUGCUGCUGCCUGCCAGCAAAAUUCUGGGACUUCCCACCCAGACCGUGGAUAGCAGCCAGGGCAGCGAGUACGAUAUUUCCAGGCAGAGACUGACAAAAUACACCAUGGCCGACCUGGUGUACGCUCUGAGGCACUUCGGAACUCUGAUGAUCGAGAGGUUUGUGAGCCUGGCCAUCGACGCCUACCCUCUGACCAAGCACCUGACCCUGGGCGUGUAUGACUACCUCGUGUCCACACAGGAGUUUCGCUACAUGAAUAGCCAGGGGCUGCUUAUGUACUCCUUCGUGAGCGAGGAGACCGGAACCCUGAUCGUGAAUUCCGUGCUGCUGUUCCUGGGCCUGGUGGAAGUGGAGAAGGGAGUGCUGCCCCAGCUGGAGCAGCCCUAUGUGUUCAUCAAACAGUAUAUCCGGAAGCUGCACGACGAACUGACCGGCCACAUGCUGGAUAUGUACAGCGUCAUGUACCUCAACACUCUGACACUGGCCGUGCCCUAUAAUAUGCGGGUUAUUCACUUCGGGGCUGGGGAACUGUUCGAGAACAAGACCACACUGCCCGUGAAUGUGGCAUUCGAACUGUGGGCCAAAAGGAAACUGUUUGCCGCUGAGACCCUGAAGGCCACUGAAGAGACCUUCAAACUGAGCUACGGGAUCUGCUCCGUGAUUGACCUCCUGCUGGACGACUUCGUGGAAAUCAUCAAGAGCCAGGACCUGAGCCAGGUGGUGAGCGAUAUCGACUACGUGCCUCUCAAGUCCGCCACAUGUAUCACCAGAUGCAAUAAGAUCUUCGUGGACGGCGUGCCGUUCGUGGUGUCCACCGGCUAUCAUUUUCGGGAGCUGGGCGAACUGAAGGUGACAUUUUUCCCAGAUCUCAAUGGGGACGUGGUGGCUAUCGACUACAAGCACUCCAGCGACUACACCAUUGUGCUGCCCGUGAUCGGCGCCAUCGUGGUCGGCCUGUGUCUGAUGGGGAUGGGGGUGUAUAAGAUCCGGCUGCGGUGCCAGUCAAGCGGAUAUCAGCGCAUUUGA |
119 | SARS-CoV-2_concat_2.4_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCACUGUGCCUCUGCAGCUCUGACACUGGGCGUGUACGACUACCUGGUGUCUACCCAAGAGUUCCGGUACAUGAACAGCCAGGGCCUGCUGGCCUCUAAGAUCCUGGGACUGCCUACACAGACCGUGGAUAGCUCUCAGGGCAGCGAGUACGACUGCAGCGUGAUCGAUCUGCUGCUCGACGACUUCGUGGAAAUCAUCAAGAGCCAGGACCUGAGCCAGUACAUCCGGAAGCUGCACGAUGAGCUGACCGGCCACAUGCUGGACAUGUACAGCGUGAUGCUGACCCCUGUGUACAGCUUCCUGCCUGGCGUGUACUCCGUGAUCUACCUGUACCUGACCUUCAACCUGAUCGACAGCUACUUCGUGGUCAAGCGGCACACCUUCAGCAACUACCAGCACGAGGAAAGCGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACUACCUGAACACACUGACCCUGGCCGUGCCUUACAACAUGAGAGUGAUCCACUUCGGCGCUGGCCACAUGGAACUGCCAACAGGUGUUCACGCCGGCACCGACCUGGAAGGCAAUUUCUAUGGACCCCAGGUGGUGUCCGACAUCGACUACGUGCCACUGAAGUCCGCCACCUGUAUCACCAGAUGCAACCACCACAGCAUCGGCUUCGAUUACGUGUACAACCCCUUCAUGAUCGACGUGCAGCAGUGGGGACCUCAGAUCGCCCAGUUUGCCCCUUCUGCCAGCGCCUUCUUUGGCAUGAGCCGGAUCGGCAUGAAGCUGUUCGCCGCCGAAACACUGAAGGCCACCGAGGAAACCUUCAAGCUGAGCUACGGCAUCGGCGUGUCCAUCUGCAGCACCAUGACCAACAGACAGUUCCACCAGAAGCUGCUGAAGUCUAUCCUGUGCACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCUAUGUACUCCUUCGUGUCCGAAGAGACAGGCACCCUGAUCGUGAACUCUGUGCUGCUGUUCCUGGGCACACUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCCAAGAGAGGCUGGGACUACCCCAAGUGCGAUCGGGCCAUGCCUAACAUGCUGCGGAUUAUGGCCAGCCUGAUCAGCCGGCAGAGACUGACCAAGUACACCAUGGCCGAUCUGGUGUACGCCCUGAGACACUUCUUCGCCUACGCCAACCGGAACAGAUUCCUGUAUAUUAUCAAGCUGAUCUUCCUGUGGCUGCUGGCCGCCAUGCAGCGGAAGCUUGAGAAGAUGGCUGACCAGGCUAUGACCCAGAUGUACAAGCAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCUAUCAGCGCCAUGGUUCGAAUGUACAUCUUCUUCGACAUCAAGGACCUCCCGAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGUCCUACUACAAGAAAAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCCACAGGCUACCACUUUAGAGAGCUGGGCACAAGCAGCGGCGACGCCACAACAGCCUAUGCCAACUCCGUGUUCAACAUCUGCCAGGCCGUGGUGUUCGACGAGAUCAGCAUGGCCACCAACUACGACCUGAGCGUGGUCAAUGCCCGGCUGCGGGAACUGAAAGUGACCUUCUUUCCCGACCUGAACGGCGACGUGGUGGCAAUCGAUUACAAGCACGGACUGGUGGAAGUGGAAAAGGGCGUGCUGCCUCAGCUGGAACAGCCCUACGUGUUCAUCAAGUCCAGCGACUACACCAUCGUGCUGCCAGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGAGCAGCGGCUACCAGAGAAUCUGA |
120 | SARS-CoV-2_concat_2.4_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCCUGACCCUGGGCGUGUACGACUACCUGGUGAGCACCCAGGAGUUCCGCUACAUGAACAGCCAGGGCCUGCUGGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACUGCAGCGUGAUCGACCUCCUGCUGGACGACUUCGUGGAGAUCAUCAAGAGCCAGGACCUGAGCCAGUACAUCCGCAAGCUGCACGACGAGCUGACCGGCCACAUGCUGGACAUGUACAGCGUGAUGCUGACCCCCGUGUACAGCUUCCUGCCCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCAACCUGAUCGACAGCUACUUCGUGGUGAAGCGCCACACCUUCAGCAACUACCAGCACGAGGAGAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACUACCUGAACACCCUGACCCUGGCCGUGCCCUACAACAUGCGCGUGAUCCACUUCGGCGCCGGCCACAUGGAGCUGCCCACCGGCGUGCACGCCGGCACCGACCUGGAGGGCAACUUCUACGGCCCCCAGGUGGUGAGCGACAUCGACUACGUGCCCCUGAAGAGCGCCACCUGUAUCACCCGCUGCAACCACCACAGCAUCGGCUUCGACUACGUGUACAACCCCUUCAUGAUCGACGUGCAGCAGUGGGGCCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCAUGAGCCGCAUCGGCAUGAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCGGCGUGAGCAUCUGCAGCACCAUGACCAACCGCCAGUUCCACCAGAAGCUGCUGAAGAGCAUCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGGCUGGGACUACCCCAAGUGCGACCGCGCCAUGCCCAACAUGCUGCGCAUCAUGGCCAGCCUGAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCUUCGCCUACGCCAACCGCAACCGCUUCCUGUACAUCAUCAAGCUGAUCUUCCUGUGGCUGCUGGCCGCCAUGCAGCGCAAGCUGGAGAAGAUGGCCGACCAGGCCAUGACCCAGAUGUACAAGCAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCCAUCAGCGCCAUGGUGCGCAUGUACAUCUUCUUCGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCACCAGCAGCGGCGACGCCACCACCGCCUACGCCAACAGCGUGUUCAACAUCUGCCAGGCCGUGGUGUUCGACGAGAUCAGCAUGGCCACCAACUACGACCUGAGCGUGGUGAACGCCCGCCUGCGCGAGCUGAAGGUGACCUUCUUCCCCGACCUGAACGGCGACGUGGUGGCCAUCGACUACAAGCACGGCCUGGUGGAGGUGGAGAAGGGCGUGCUGCCCCAGCUGGAGCAGCCCUACGUGUUCAUCAAGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
121 | SARS-CoV-2_concat_2.4_DCL_opt3 | AUGGCCGCCCCAGGCUCUGCCAGGCGCCCCCUGCUGCUCCUGCUGCUGCUCCUGCUGCUGGGCCUGAUGCACUGCGCUAGCGCAGCCCUGACACUGGGCGUGUACGAUUACCUGGUGAGCACACAGGAGUUCCGGUACAUGAAUAGCCAGGGCCUGCUGGCCAGCAAAAUUUUGGGGCUGCCCACACAGACUGUGGACUCCUCCCAGGGCUCUGAAUACGAUUGCAGCGUGAUCGACCUCCUGCUGGAUGACUUCGUGGAAAUCAUCAAGUCUCAGGAUCUGUCCCAGUACAUUCGCAAACUGCACGAUGAGCUGACCGGACACAUGCUGGAUAUGUACAGCGUGAUGCUGACCCCUGUGUACUCCUUCCUGCCUGGCGUCUACAGCGUGAUCUACCUGUAUCUGACUUUCAACCUGAUCGAUUCCUACUUCGUCGUGAAGCGCCACACUUUUUCCAACUACCAGCACGAGGAGAGUGCCGGCUUCCCCUUCAACAAAUGGGGCAAGGCCAGACUGUAUUACGAUUCCAUGUCUUACUACCUGAAUACACUGACACUGGCCGUGCCCUACAACAUGAGAGUGAUCCACUUUGGAGCCGGCCACAUGGAGCUGCCUACCGGGGUGCACGCCGGGACCGACCUGGAAGGGAAUUUCUAUGGGCCUCAGGUGGUGUCUGACAUUGACUAUGUGCCCCUGAAAUCCGCCACUUGCAUCACCCGGUGCAACCAUCACUCUAUCGGCUUUGACUAUGUGUACAACCCAUUCAUGAUUGACGUGCAGCAGUGGGGCCCACAGAUUGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUUGGCAUGAGCAGGAUCGGCAUGAAGCUCUUUGCCGCCGAAACCCUGAAGGCAACCGAGGAAACCUUCAAACUGUCCUACGGUAUCGGAGUGAGCAUCUGCUCCACAAUGACCAACAGGCAGUUUCAUCAGAAGCUCCUGAAGUCCAUCCUGUGCACCUUCCUGCUGAAUAAGGAGAUGUAUCUGAAGCUGAGAUCCGACGUGUUGCUGCCUAUGUACUCCUUUGUGAGCGAGGAGACAGGAACUCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGGAACCCUGAUGAUCGAGAGGUUCGUGAGCCUGGCCAUCGACGCCUACCCUCUGACCAAACACGAACUGUUCGAGAAUAAAACAACACUGCCAGUGAAUGUGGCCUUCGAACUGUGGGCUAAAAGAGGCUGGGAUUAUCCUAAAUGUGACCGGGCCAUGCCUAACAUGCUGAGGAUUAUGGCUUCACUGAUCAGCAGGCAGAGACUGACCAAGUACACCAUGGCCGACCUGGUGUAUGCCCUGAGGCAUUUCUUCGCCUAUGCUAAUAGAAACAGGUUCCUGUACAUCAUUAAGCUUAUCUUUUUGUGGCUGCUGGCCGCCAUGCAGCGGAAGCUUGAGAAAAUGGCUGAUCAGGCCAUGACUCAGAUGUACAAGCAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCCAUUAGCGCCAUGGUGCGGAUGUAUAUCUUCUUCGACAUCAAGGAUCUGCCAAAAGAGAUCACAGUGGCCACAUCUCGUACGCUGAGCUACUACAAGAAGAUUUUCGUGGACGGCGUGCCAUUCGUGGUGAGCACCGGCUACCACUUUAGAGAGCUGGGCACCAGCUCUGGAGACGCUACCACCGCAUACGCAAACAGCGUGUUUAACAUCUGCCAGGCCGUGGUCUUCGAUGAGAUCAGCAUGGCUACCAACUACGAUCUGAGUGUGGUUAACGCUCGCCUGCGCGAGCUUAAGGUCACCUUCUUCCCAGACCUCAACGGCGAUGUGGUCGCCAUUGACUACAAACACGGCCUGGUGGAGGUGGAGAAGGGGGUGCUGCCACAGCUGGAGCAGCCCUACGUGUUCAUUAAGUCUAGCGAUUACACAAUCGUGCUGCCCGUUAUCGGAGCUAUUGUGGUGGGCCUGUGCCUGAUGGGCAUGGGAGUGUACAAGAUCAGGCUGCGCUGCCAGAGCUCAGGGUACCAGAGGAUUUGA |
122 | SARS-CoV-2_concat_2.4.1_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCACUGUGCCUCUGCAGCUCUGACACUGGGCGUGUACGACUACCUGGUGUCUACCCAAGAGUUCCGGUACAUGAACAGCCAGGGCCUGCUGGCCUCUAAGAUCCUGGGACUGCCUACACAGACCGUGGAUAGCUCUCAGGGCAGCGAGUACGACUGCAGCGUGAUCGAUCUGCUGCUCGACGACUUCGUGGAAAUCAUCAAGAGCCAGGACCUGAGCCAGUACAUCCGGAAGCUGCACGAUGAGCUGACCGGCCACAUGCUGGACAUGUACAGCGUGAUGCUGACCCCUGUGUACAGCUUCCUGCCUGGCGUGUACUCCGUGAUCUACCUGUACCUGACCUUCAACCUGAUCGACAGCUACUUCGUGGUCAAGCGGCACACCUUCAGCAACUACCAGCACGAGGAAAGCGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACUACCUGAACACACUGACCCUGGCCGUGCCUUACAACAUGAGAGUGAUCCACUUCGGCGCUGGCCACAUGGAACUGCCAACAGGUGUUCACGCCGGCACCGACCUGGAAGGCAAUUUCUAUGGACCCCAGGUGGUGUCCGACAUCGACUACGUGCCACUGAAGUCCGCCACCUGUAUCACCAGAUGCAACCACCACAGCAUCGGCUUCGAUUACGUGUACAACCCCUUCAUGAUCGACGUGCAGCAGUGGGGACCUCAGAUCGCCCAGUUUGCCCCUUCUGCCAGCGCCUUCUUUGGCAUGAGCCGGAUCGGCAUGAAGCUGUUCGCCGCCGAAACACUGAAGGCCACCGAGGAAACCUUCAAGCUGAGCUACGGCAUCGGCGUGUCCAUCUGCAGCACCAUGACCAACAGACAGUUCCACCAGAAGCUGCUGAAGUCCAUCAGCAGCGACUACACCAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGAGUGUACAAGAUCCGGCUGAGAUGCCAGAGCAGCGGCUACCAGAGAAUCUGA |
123 | SARS-CoV-2_concat_2.4.1_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCCUGACCCUGGGCGUGUACGACUACCUGGUGAGCACCCAGGAGUUCCGCUACAUGAACAGCCAGGGCCUGCUGGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACUGCAGCGUGAUCGACCUCCUGCUGGACGACUUCGUGGAGAUCAUCAAGAGCCAGGACCUGAGCCAGUACAUCCGCAAGCUGCACGACGAGCUGACCGGCCACAUGCUGGACAUGUACAGCGUGAUGCUGACCCCCGUGUACAGCUUCCUGCCCGGCGUGUACAGCGUGAUCUACCUGUACCUGACCUUCAACCUGAUCGACAGCUACUUCGUGGUGAAGCGCCACACCUUCAGCAACUACCAGCACGAGGAGAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACUACCUGAACACCCUGACCCUGGCCGUGCCCUACAACAUGCGCGUGAUCCACUUCGGCGCCGGCCACAUGGAGCUGCCCACCGGCGUGCACGCCGGCACCGACCUGGAGGGCAACUUCUACGGCCCCCAGGUGGUGAGCGACAUCGACUACGUGCCCCUGAAGAGCGCCACCUGUAUCACCCGCUGCAACCACCACAGCAUCGGCUUCGACUACGUGUACAACCCCUUCAUGAUCGACGUGCAGCAGUGGGGCCCCCAGAUCGCCCAGUUCGCCCCCAGCGCCAGCGCCUUCUUCGGCAUGAGCCGCAUCGGCAUGAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCGGCGUGAGCAUCUGCAGCACCAUGACCAACCGCCAGUUCCACCAGAAGCUGCUGAAGAGCAUCAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
124 | SARS-CoV-2_concat_2.4.1_DCL_opt3 | AUGGCAGCCCCUGGCUCCGCCAGAAGACCACUGCUGCUCCUGCUGCUGCUGCUCCUGCUGGGCCUGAUGCACUGCGCCUCCGCUGCCCUGACCCUGGGCGUGUAUGACUACCUGGUGAGCACCCAGGAGUUCAGAUACAUGAACUCUCAGGGCCUCCUGGCCUCCAAGAUCCUGGGCCUGCCCACCCAAACCGUGGACUCAUCUCAGGGAUCCGAGUACGAUUGCUCCGUGAUCGACCUCCUGCUGGACGAUUUCGUGGAAAUCAUUAAGAGCCAGGAUCUGUCUCAGUAUAUCAGAAAGCUGCAUGACGAGCUGACCGGCCACAUGCUCGACAUGUAUUCCGUGAUGCUGACACCCGUGUACUCUUUCCUGCCCGGCGUGUAUUCUGUGAUCUAUCUCUACCUGACCUUCAACCUGAUCGACUCAUACUUCGUGGUGAAGAGACAUACCUUCAGCAACUAUCAGCACGAGGAGAGCGCUGGCUUCCCCUUUAACAAGUGGGGCAAGGCUAGACUGUACUAUGAUAGCAUGUCUUAUUACCUGAACACACUGACCCUGGCUGUGCCAUACAACAUGAGGGUGAUUCACUUUGGCGCUGGACACAUGGAGCUGCCUACCGGAGUGCACGCCGGCACCGAUCUGGAGGGAAAUUUCUAUGGGCCCCAGGUGGUGUCCGACAUCGACUACGUGCCCCUGAAGUCGGCCACAUGUAUUACUCGCUGCAACCACCACAGCAUUGGCUUUGAUUAUGUGUAUAACCCCUUCAUGAUCGACGUGCAGCAGUGGGGCCCACAGAUCGCUCAGUUCGCCCCUUCAGCCAGUGCCUUCUUUGGGAUGUCCAGAAUCGGAAUGAAGCUGUUUGCCGCCGAGACCCUGAAGGCCACAGAAGAGACCUUUAAGCUGUCCUACGGAAUCGGCGUGAGCAUUUGCUCCACCAUGACCAAUAGACAGUUCCACCAGAAACUGCUGAAGUCUAUUUCUAGCGACUAUACCAUUGUGCUGCCCGUGAUCGGGGCCAUCGUGGUGGGCCUGUGCCUGAUGGGAAUGGGCGUGUACAAGAUUAGGCUGAGGUGUCAGAGCAGCGGCUACCAGCGGAUUUAA |
125 | SARS-CoV-2_concat_2.4.2_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCACUGUGCCUCUGCAGCCCUGUGUACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCCAUGUACAGCUUUGUGUCCGAGGAAACCGGCACACUGAUCGUGAACUCUGUGCUGCUGUUCCUGGGCACCCUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCCAAGAGAGGCUGGGACUACCCCAAGUGCGAUCGGGCCAUGCCUAACAUGCUGCGGAUUAUGGCCAGCCUGAUCAGCCGGCAGAGACUGACCAAGUACACCAUGGCCGAUCUGGUGUACGCCCUGAGACACUUCUUCGCCUACGCCAACCGGAACAGAUUCCUGUAUAUUAUCAAGCUGAUCUUCCUGUGGCUGCUGGCCGCCAUGCAGCGGAAGCUUGAGAAGAUGGCUGACCAGGCCAUGACACAGAUGUACAAGCAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCUAUCAGCGCCAUGGUCCGAAUGUACAUCUUCUUCGACAUCAAGGACCUCCCGAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUACAAGAAAAUCUUCGUGGACGGCGUGCCCUUCGUGGUGUCUACCGGCUACCACUUUAGAGAGCUGGGCACAAGCAGCGGCGACGCCACAACAGCCUAUGCCAACAGCGUGUUCAACAUCUGCCAGGCCGUGGUGUUCGACGAGAUCAGCAUGGCCACCAACUACGACCUGAGCGUGGUCAAUGCCCGGCUGCGGGAACUGAAAGUGACCUUCUUUCCCGACCUGAACGGCGACGUGGUGGCAAUCGAUUACAAGCACGGACUGGUGGAAGUGGAAAAGGGCGUGCUGCCUCAGCUGGAACAGCCCUACGUGUUCAUCAAGAGCAGCGACUACACCAUCGUGCUGCCAGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGCGUGUACAAGAUCCGGCUGAGAUGCCAGAGCAGCGGCUAUCAGAGAAUCUGA |
126 | SARS-CoV-2_concat_2.4.2_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGGCUGGGACUACCCCAAGUGCGACCGCGCCAUGCCCAACAUGCUGCGCAUCAUGGCCAGCCUGAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCUUCGCCUACGCCAACCGCAACCGCUUCCUGUACAUCAUCAAGCUGAUCUUCCUGUGGCUGCUGGCCGCCAUGCAGCGCAAGCUGGAGAAGAUGGCCGACCAGGCCAUGACCCAGAUGUACAAGCAGCUGAUCAUCAACCUGGUGCAGAUGGCCCCCAUCAGCGCCAUGGUGCGCAUGUACAUCUUCUUCGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCACCAGCAGCGGCGACGCCACCACCGCCUACGCCAACAGCGUGUUCAACAUCUGCCAGGCCGUGGUGUUCGACGAGAUCAGCAUGGCCACCAACUACGACCUGAGCGUGGUGAACGCCCGCCUGCGCGAGCUGAAGGUGACCUUCUUCCCCGACCUGAACGGCGACGUGGUGGCCAUCGACUACAAGCACGGCCUGGUGGAGGUGGAGAAGGGCGUGCUGCCCCAGCUGGAGCAGCCCUACGUGUUCAUCAAGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
127 | SARS-CoV-2_concat_2.4.2_DCL_opt3 | AUGGCCGCCCCAGGCUCUGCCAGGCGCCCCCUGCUGCUCCUGCUGCUGCUCCUGCUGCUGGGCCUGAUGCACUGCGCUAGCGCAGCCCUGUGUACAUUCCUGCUGAAUAAAGAGAUGUAUCUGAAGCUGAGAUCUGACGUCCUGCUGCCCAUGUACAGCUUCGUGUCCGAGGAGACGGGGACCCUGAUCGUGAAUUCUGUGCUCCUGUUCCUGGGCACCCUGAUGAUUGAGAGAUUCGUGAGCCUGGCCAUCGACGCCUACCCUCUGACCAAACACGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCUAAGCGCGGAUGGGACUACCCCAAGUGCGACCGCGCCAUGCCUAACAUGCUGAGAAUUAUGGCCAGCUUAAUCAGCCGGCAGAGGCUGACAAAAUACACCAUGGCCGACCUCGUGUACGCCCUGCGGCACUUCUUCGCCUACGCAAACCGCAACCGCUUCCUGUACAUCAUCAAGCUGAUCUUUCUGUGGCUGCUGGCCGCCAUGCAGCGGAAGCUGGAAAAGAUGGCCGACCAGGCCAUGACCCAGAUGUACAAGCAGCUGAUCAUCAAUCUGGUGCAGAUGGCCCCAAUCUCCGCCAUGGUGCGAAUGUACAUUUUUUUCGAUAUUAAGGACCUCCCUAAGGAGAUUACCGUGGCCACCAGCCGUACCCUGAGCUACUACAAAAAGAUCUUCGUGGACGGCGUGCCCUUUGUGGUGAGCACCGGCUAUCACUUCAGGGAACUGGGUACCUCCUCCGGGGAUGCAACUACCGCCUACGCCAAUUCUGUGUUCAACAUUUGCCAGGCCGUGGUCUUCGAUGAGAUCAGCAUGGCCACCAACUACGAUCUGUCUGUGGUGAACGCCCGCCUGCGCGAGCUGAAAGUGACCUUCUUCCCUGACCUGAAUGGCGACGUGGUGGCUAUUGACUACAAACACGGCCUGGUGGAGGUGGAAAAAGGAGUGCUGCCCCAGCUGGAGCAGCCAUACGUGUUCAUCAAAAGUUCUGAUUACACCAUCGUGUUGCCAGUGAUUGGAGCUAUCGUGGUGGGGCUGUGCCUGAUGGGGAUGGGCGUGUACAAGAUUAGACUGAGGUGCCAGAGCUCUGGCUACCAGAGAAUCUGA |
128 | SARS-CoV-2_concat_2.5_DCL_opt1 | AUGGCUGCUCCUGGAUCUGCUAGAAGGCCUCUGCUGCUGCUUCUGUUGCUCCUGCUGCUGGGCCUGAUGCACUGUGCCUCUGCAGCCCUGUGUACCUUCCUGCUGAACAAAGAGAUGUACCUGAAGCUGCGGAGCGACGUGCUGCUGCCCAAGAUCUUUGUGGAUGGCGUGCCCUUCGUGGUGUCCACCGGCUACCACUUUAGAGAGCUGGGCUCUGCCGGCUUUCCCUUCAACAAAUGGGGCAAAGCCCGGCUGUACUACGACAGCAUGAGCUACGACAUCAAGGACCUCCCUAAAGAAAUCACCGUGGCCACCAGCAGAACCCUGAGCUACUACAAGGGCACCCUGAUGAUCGAGAGAUUCGUGUCCCUGGCUAUCGACGCCUAUCCUCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACACUGCCCGUGAACGUGGCCUUUGAGCUGUGGGCCAAGAGAGCCAGCAAGAUCCUGGGACUGCCUACACAGACCGUGGAUAGCUCUCAGGGCAGCGAGUACGACAAGCUGUUUGCCGCCGAGACACUGAAGGCCACCGAGGAAACCUUCAAGCUGUCCUACGGCAUCAUCAGCAGACAGCGGCUGACCAAGUACACCAUGGCCGAUCUGGUGUACGCCCUGCGGCACUUCAUGUACAGCUUCGUGUCCGAAGAGACAGGCACACUGAUCGUGAACUCUGUGCUGCUGUUCCUGAGCAGCGACUACACCAUCGUGCUGCCUGUGAUCGGCGCCAUCGUUGUGGGACUGUGUCUGAUGGGCAUGGGCGUGUACAAGAUCCGGCUGAGAUGCCAGAGCAGCGGCUAUCAGAGAAUCUGA |
129 | SARS-CoV-2_concat_2.5_DCL_opt2 | AUGGCCGCCCCCGGCAGCGCCCGCCGCCCCCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGGGCCUGAUGCACUGCGCCAGCGCCGCCCUGUGCACCUUCCUGCUGAACAAGGAGAUGUACCUGAAGCUGCGCAGCGACGUGCUGCUGCCCAAGAUCUUCGUGGACGGCGUGCCCUUCGUGGUGAGCACCGGCUACCACUUCCGCGAGCUGGGCAGCGCCGGCUUCCCCUUCAACAAGUGGGGCAAGGCCCGCCUGUACUACGACAGCAUGAGCUACGACAUCAAGGACCUCCCCAAGGAGAUCACCGUGGCCACCAGCCGCACCCUGAGCUACUACAAGGGCACCCUGAUGAUCGAGCGCUUCGUGAGCCUGGCCAUCGACGCCUACCCCCUGACCAAGCACGAGCUGUUCGAGAACAAGACCACCCUGCCCGUGAACGUGGCCUUCGAGCUGUGGGCCAAGCGCGCCAGCAAGAUCCUGGGCCUGCCCACCCAGACCGUGGACAGCAGCCAGGGCAGCGAGUACGACAAGCUGUUCGCCGCCGAGACCCUGAAGGCCACCGAGGAGACCUUCAAGCUGAGCUACGGCAUCAUCAGCCGCCAGCGCCUGACCAAGUACACCAUGGCCGACCUGGUGUACGCCCUGCGCCACUUCAUGUACAGCUUCGUGAGCGAGGAGACCGGCACCCUGAUCGUGAACAGCGUGCUGCUGUUCCUGAGCAGCGACUACACCAUCGUGCUGCCCGUGAUCGGCGCCAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGCGUGUACAAGAUCCGCCUGCGCUGCCAGAGCAGCGGCUACCAGCGCAUCUAA |
130 | SARS-CoV-2_concat_2.5_DCL_opt3 | AUGGCCGCCCCAGGCAGCGCCAGGAGACCACUGCUCCUGCUGCUGCUGCUGCUGCUCCUGGGGCUGAUGCACUGCGCCUCUGCCGCUCUGUGCACCUUCCUGCUGAACAAGGAGAUGUAUCUGAAGCUGAGGUCCGACGUGCUGCUGCCAAAAAUUUUCGUGGACGGCGUGCCCUUUGUGGUGUCCACCGGCUACCACUUCAGGGAGCUGGGGAGCGCCGGCUUCCCCUUUAACAAGUGGGGAAAAGCCAGACUGUACUACGAUAGCAUGAGCUACGACAUCAAAGAUCUGCCUAAGGAGAUCACAGUGGCCACAUCCAGAACCCUGAGUUACUACAAGGGAACCCUCAUGAUCGAGAGGUUCGUGAGCCUGGCCAUCGACGCCUACCCUCUGACCAAGCACGAGCUGUUUGAAAACAAAACCACACUGCCCGUCAACGUGGCUUUCGAGCUGUGGGCCAAGAGGGCCUCUAAAAUCCUGGGCCUGCCUACCCAGACCGUGGACUCCUCCCAGGGCUCUGAAUACGAUAAACUGUUCGCCGCCGAGACCCUGAAAGCCACCGAGGAGACCUUCAAACUGUCCUACGGAAUCAUCAGCCGCCAGAGGCUGACCAAGUACACCAUGGCUGACCUCGUGUACGCCCUGCGGCAUUUUAUGUACAGCUUCGUGAGUGAGGAGACCGGUACACUGAUCGUGAACAGCGUGCUGCUGUUUUUGUCUAGCGACUACACCAUCGUGCUGCCCGUCAUCGGCGCGAUCGUGGUGGGCCUGUGCCUGAUGGGCAUGGGUGUGUAUAAGAUCCGGCUGAGGUGUCAGAGCUCUGGCUACCAGAGAAUCUGA |
SEQ ID | 名稱 | 序列 |
131 | SARS-CoV-2_S_PP_δ_opt1 | AUGUUCGUGUUCCUGGUGCUGCUGCCUCUGGUGUCCAGCCAGUGUGUGAACCUCCGGACCAGAACACAGCUGCCUCCAGCCUACACCAACAGCUUUACCAGAGGCGUGUACUACCCCGACAAGGUGUUCAGAUCCAGCGUGCUGCACUCUACCCAGGACCUGUUCCUGCCUUUCUUCAGCAACGUGACCUGGUUCCACGCCAUCCACGUGUCCGGCACCAAUGGCACCAAGAGAUUCGACAACCCCGUGCUGCCCUUCAACGACGGGGUGUACUUUGCCAGCACCGAGAAGUCCAACAUCAUCAGAGGCUGGAUCUUCGGCACCACACUGGACAGCAAGACCCAGAGCCUGCUGAUCGUGAACAACGCCACCAACGUGGUCAUCAAAGUGUGCGAGUUCCAGUUCUGCAACGACCCCUUCCUGGACGUGUACUAUCACAAGAACAACAAGAGCUGGAUGGAAAGCGGCGUGUACAGCAGCGCCAACAACUGCACCUUCGAGUACGUGUCCCAGCCUUUCCUGAUGGACCUGGAAGGCAAGCAGGGCAACUUCAAGAACCUCCGCGAGUUCGUGUUUAAGAACAUCGACGGCUACUUCAAGAUCUACAGCAAGCACACCCCUAUCAACCUCGUGCGGGAUCUGCCUCAGGGCUUCUCUGCUCUGGAACCCCUGGUGGAUCUGCCCAUCGGCAUCAACAUCACCCGGUUUCAGACACUGCUGGCCCUGCACAGAAGCUACCUGACACCUGGCGAUAGCAGCAGCGGAUGGACAGCUGGUGCCGCCGCUUACUAUGUGGGCUACCUCCAGCCUAGAACCUUCCUGCUGAAGUACAACGAGAACGGCACCAUCACCGACGCCGUGGAUUGUGCUCUGGAUCCUCUGAGCGAGACAAAGUGCACCCUGAAGUCCUUCACCGUGGAAAAGGGCAUCUACCAGACCAGCAACUUCCGGGUGCAGCCCACCGAAUCCAUCGUGCGGUUCCCCAAUAUCACCAAUCUGUGCCCCUUCGGCGAGGUGUUCAAUGCCACCAGAUUCGCCUCUGUGUACGCCUGGAACCGGAAGCGGAUCAGCAAUUGCGUGGCCGACUACUCCGUGCUGUACAACUCCGCCAGCUUCAGCACCUUCAAGUGCUACGGCGUGUCCCCUACCAAGCUGAACGACCUGUGCUUCACAAACGUGUACGCCGACAGCUUCGUGAUCCGGGGAGAUGAAGUGCGGCAGAUUGCCCCUGGACAGACAGGCAAGAUCGCCGACUACAACUACAAGCUGCCCGACGACUUCACCGGCUGUGUGAUUGCCUGGAACAGCAACAACCUGGACUCCAAAGUCGGCGGCAACUACAAUUACCGGUACAGGCUGUUCCGGAAGUCCAAUCUGAAGCCCUUCGAGCGGGACAUCUCCACCGAGAUCUAUCAGGCCGGCAGCAAGCCUUGCAACGGCGUGGAAGGCUUCAACUGCUACUUCCCACUGCAGUCCUACGGCUUUCAGCCCACAAAUGGCGUGGGCUAUCAGCCCUACAGAGUGGUGGUGCUGAGCUUCGAACUGCUGCAUGCCCCUGCCACAGUGUGCGGCCCUAAGAAAAGCACCAAUCUCGUGAAGAACAAAUGCGUGAACUUCAACUUCAACGGCCUGACCGGCACCGGCGUGCUGACAGAGAGCAACAAGAAGUUCCUGCCAUUCCAGCAGUUUGGCCGGGAUAUCGCCGAUACCACAGACGCCGUUAGAGAUCCCCAGACACUGGAAAUCCUGGACAUCACCCCUUGCAGCUUCGGCGGAGUGUCUGUGAUCACCCCUGGCACCAACACCAGCAAUCAGGUGGCAGUGCUGUACCAGGGCGUGAACUGUACAGAGGUGCCAGUGGCCAUUCACGCCGAUCAGCUGACCCCUACUUGGCGGGUGUACUCCACAGGCAGCAAUGUGUUUCAGACCAGAGCCGGCUGUCUGAUCGGAGCCGAGCACGUGAACAAUAGCUACGAGUGCGACAUCCCCAUCGGCGCUGGCAUCUGUGCCAGCUACCAGACACAGACCAACAGCAGGCGGAGAGCCAGAUCUGUGGCCAGCCAGAGCAUCAUUGCCUACACAAUGUCUCUGGGCGCCGAGAACAGCGUGGCCUACUCCAACAACUCUAUCGCUAUCCCCACCAACUUCACCAUCAGCGUGACCACAGAGAUCCUGCCUGUGUCCAUGACCAAGACCAGCGUGGACUGCACCAUGUACAUCUGCGGCGAUUCCACCGAGUGCUCCAACCUCCUGCUGCAGUACGGCAGCUUCUGCACCCAGCUGAAUAGAGCCCUGACAGGGAUCGCCGUGGAACAGGACAAGAACACCCAAGAGGUGUUCGCCCAAGUGAAGCAGAUCUACAAGACCCCUCCUAUCAAGGACUUCGGCGGCUUCAAUUUCAGCCAGAUUCUGCCCGAUCCUAGCAAGCCCAGCAAGCGGAGCUUCAUCGAGGACCUCCUGUUCAACAAAGUGACACUGGCCGACGCCGGCUUCAUCAAGCAGUAUGGCGAUUGUCUGGGCGACAUUGCCGCCAGGGAUCUGAUUUGCGCCCAGAAGUUUAACGGACUGACAGUGCUGCCUCCUCUGCUGACCGAUGAGAUGAUCGCCCAGUACACAUCUGCCCUGCUGGCCGGCACAAUCACAAGCGGCUGGACAUUUGGAGCUGGCGCCGCUCUGCAGAUCCCCUUUGCUAUGCAGAUGGCCUACCGGUUCAACGGCAUCGGAGUGACCCAGAAUGUGCUGUACGAGAACCAGAAGCUGAUCGCCAACCAGUUCAACAGCGCCAUCGGCAAGAUCCAGGACAGCCUGAGCAGCACAGCAAGCGCCCUGGGAAAGCUGCAGAACGUCGUGAACCAGAACGCCCAGGCACUGAACACCCUGGUCAAGCAGCUGUCCUCCAACUUCGGCGCCAUCAGCUCUGUGCUGAACGAUAUCCUGAGCAGACUGGACCCUCCUGAGGCCGAGGUGCAGAUCGACAGACUGAUCACAGGCAGACUGCAGAGCCUCCAGACAUACGUGACCCAGCAGCUGAUCAGAGCCGCCGAGAUUAGAGCCUCUGCCAAUCUGGCCGCCACCAAGAUGUCUGAGUGUGUGCUGGGCCAGAGCAAGAGAGUGGACUUUUGCGGCAAGGGCUACCACCUGAUGAGCUUCCCUCAGUCUGCACCACACGGCGUGGUGUUUCUGCACGUGACCUACGUGCCCGCUCAAGAGAAGAAUUUCACCACCGCUCCAGCCAUCUGCCACGACGGCAAAGCCCACUUUCCUAGAGAAGGCGUGUUCGUGUCCAACGGCACCCAUUGGUUCGUGACACAGCGGAACUUCUACGAGCCCCAGAUCAUCACCACCGACAACACCUUCGUGUCUGGCAACUGCGACGUCGUGAUCGGCAUUGUGAACAAUACCGUGUACGACCCUCUGCAGCCCGAGCUGGACAGCUUCAAAGAGGAACUGGACAAGUACUUUAAGAACCACACAAGCCCCGACGUGGACCUGGGCGAUAUCAGCGGAAUCAAUGCCAGCGUGGUCAACAUCCAGAAAGAGAUCGACCGGCUGAACGAGGUGGCCAAGAAUCUGAACGAGAGCCUGAUCGACCUCCAAGAACUGGGGAAGUACGAGCAGUACAUCAAGUGGCCUUGGUACAUCUGGCUGGGCUUUAUCGCCGGACUGAUUGCCAUCGUGAUGGUCACAAUCAUGCUGUGUUGCAUGACCAGCUGCUGUAGCUGCCUGAAGGGCUGUUGUAGCUGUGGCAGCUGCUGCAAGUUCGACGAGGACGAUUCUGAGCCCGUGCUGAAAGGCGUGAAGCUGCACUACACCUGA |
132 | SARS-CoV-2_S_stab_δ_opt1 | AUGUUCGUGUUCCUGGUGCUGCUGCCUCUGGUGUCCAGCCAGUGUGUGAACCUCCGGACCAGAACACAGCUGCCUCCAGCCUACACCAACAGCUUUACCAGAGGCGUGUACUACCCCGACAAGGUGUUCAGAUCCAGCGUGCUGCACUCUACCCAGGACCUGUUCCUGCCUUUCUUCAGCAACGUGACCUGGUUCCACGCCAUCCACGUGUCCGGCACCAAUGGCACCAAGAGAUUCGACAACCCCGUGCUGCCCUUCAACGACGGGGUGUACUUUGCCAGCACCGAGAAGUCCAACAUCAUCAGAGGCUGGAUCUUCGGCACCACACUGGACAGCAAGACCCAGAGCCUGCUGAUCGUGAACAACGCCACCAACGUGGUCAUCAAAGUGUGCGAGUUCCAGUUCUGCAACGACCCCUUCCUGGACGUGUACUAUCACAAGAACAACAAGAGCUGGAUGGAAAGCGGCGUGUACAGCAGCGCCAACAACUGCACCUUCGAGUACGUGUCCCAGCCUUUCCUGAUGGACCUGGAAGGCAAGCAGGGCAACUUCAAGAACCUCCGCGAGUUCGUGUUUAAGAACAUCGACGGCUACUUCAAGAUCUACAGCAAGCACACCCCUAUCAACCUCGUGCGGGAUCUGCCUCAGGGCUUCUCUGCUCUGGAACCCCUGGUGGAUCUGCCCAUCGGCAUCAACAUCACCCGGUUUCAGACACUGCUGGCCCUGCACAGAAGCUACCUGACACCUGGCGAUAGCAGCAGCGGAUGGACAGCUGGUGCCGCCGCUUACUAUGUGGGCUACCUCCAGCCUAGAACCUUCCUGCUGAAGUACAACGAGAACGGCACCAUCACCGACGCCGUGGAUUGUGCUCUGGAUCCUCUGAGCGAGACAAAGUGCACCCUGAAGUCCUUCACCGUGGAAAAGGGCAUCUACCAGACCAGCAACUUCCGGGUGCAGCCCACCGAAUCCAUCGUGCGGUUCCCCAAUAUCACCAAUCUGUGCCCCUUCGGCGAGGUGUUCAAUGCCACCAGAUUCGCCUCUGUGUACGCCUGGAACCGGAAGCGGAUCAGCAAUUGCGUGGCCGACUACUCCGUGCUGUACAACUCCGCCAGCUUCAGCACCUUCAAGUGCUACGGCGUGUCCCCUACCAAGCUGAACGACCUGUGCUUCACAAACGUGUACGCCGACAGCUUCGUGAUCCGGGGAGAUGAAGUGCGGCAGAUUGCCCCUGGACAGACAGGCAAGAUCGCCGACUACAACUACAAGCUGCCCGACGACUUCACCGGCUGUGUGAUUGCCUGGAACAGCAACAACCUGGACUCCAAAGUCGGCGGCAACUACAAUUACCGGUACAGGCUGUUCCGGAAGUCCAAUCUGAAGCCCUUCGAGCGGGACAUCUCCACCGAGAUCUAUCAGGCCGGCAGCAAGCCUUGCAACGGCGUGGAAGGCUUCAACUGCUACUUCCCACUGCAGUCCUACGGCUUUCAGCCCACAAAUGGCGUGGGCUAUCAGCCCUACAGAGUGGUGGUGCUGAGCUUCGAACUGCUGCAUGCCCCUGCCACAGUGUGCGGCCCUAAGAAAAGCACCAAUCUCGUGAAGAACAAAUGCGUGAACUUCAACUUCAACGGCCUGACCGGCACCGGCGUGCUGACAGAGAGCAACAAGAAGUUCCUGCCAUUCCAGCAGUUUGGCCGGGAUAUCGCCGAUACCACAGACGCCGUUAGAGAUCCCCAGACACUGGAAAUCCUGGACAUCACCCCUUGCAGCUUCGGCGGAGUGUCUGUGAUCACCCCUGGCACCAACACCAGCAAUCAGGUGGCAGUGCUGUACCAGGGCGUGAACUGUACAGAGGUGCCAGUGGCCAUUCACGCCGAUCAGCUGACCCCUACUUGGCGGGUGUACUCCACAGGCAGCAAUGUGUUUCAGACCAGAGCCGGCUGUCUGAUCGGAGCCGAGCACGUGAACAAUAGCUACGAGUGCGACAUCCCCAUCGGCGCUGGCAUCUGUGCCAGCUACCAGACACAGACCAACAGCAGAGGCUCUGCCAGCUCUGUGGCCAGCCAGAGCAUCAUUGCCUACACAAUGUCUCUGGGCGCCGAGAACAGCGUGGCCUACUCCAACAACUCUAUCGCUAUCCCCACCAACUUCACCAUCAGCGUGACCACAGAGAUCCUGCCUGUGUCCAUGACCAAGACCAGCGUGGACUGCACCAUGUACAUCUGCGGCGAUUCCACCGAGUGCUCCAACCUCCUGCUGCAGUACGGCAGCUUCUGCACCCAGCUGAAUAGAGCCCUGACAGGGAUCGCCGUGGAACAGGACAAGAACACCCAAGAGGUGUUCGCCCAAGUGAAGCAGAUCUACAAGACCCCUCCUAUCAAGGACUUCGGCGGCUUCAAUUUCAGCCAGAUUCUGCCCGAUCCUAGCAAGCCCAGCAAGCGGAGCCCUAUCGAGGACCUCCUGUUCAACAAAGUGACACUGGCCGACGCCGGCUUCAUCAAGCAGUAUGGCGAUUGUCUGGGCGACAUUGCCGCCAGGGAUCUGAUUUGCGCCCAGAAGUUUAACGGACUGACAGUGCUGCCUCCUCUGCUGACCGAUGAGAUGAUCGCCCAGUACACAUCUGCCCUGCUGGCCGGCACAAUCACAAGCGGCUGGACAUUUGGAGCCGGGCCUGCUCUGCAGAUCCCAUUUCCAAUGCAGAUGGCCUACCGGUUCAACGGCAUCGGAGUGACCCAGAAUGUGCUGUACGAGAACCAGAAGCUGAUCGCCAACCAGUUCAACAGCGCCAUCGGCAAGAUCCAGGACAGCCUGAGCAGCACACCUAGCGCUCUGGGCAAGCUGCAGAACGUCGUGAACCAGAAUGCCCAGGCACUGAACACCCUGGUCAAGCAGCUGUCCUCCAACUUCGGCGCCAUCUCUAGCGUGCUGAACGAUAUCCUGAGCAGACUGGACCCUCCUGAGGCCGAGGUGCAGAUCGACAGACUGAUCACAGGCAGACUCCAGUCUCUGCAGACCUACGUGACCCAGCAGCUGAUCAGAGCCGCCGAGAUUAGAGCCAGCGCUAAUCUGGCCGCCACCAAGAUGUCUGAGUGUGUGCUGGGCCAGAGCAAGAGAGUGGACUUUUGCGGCAAGGGCUACCACCUGAUGAGCUUCCCUCAGUCUGCACCACACGGCGUGGUGUUUCUGCACGUGACAUACGUGCCCGCUCAAGAGAAGAAUUUCACCACCGCUCCAGCCAUCUGCCACGACGGCAAAGCCCACUUUCCUAGAGAAGGCGUGUUCGUGUCCAACGGCACCCAUUGGUUCGUGACACAGCGGAACUUCUACGAGCCCCAGAUCAUCACCACCGACAACACCUUCGUGUCUGGCAACUGUGACGUCGUGAUCGGCAUUGUGAACAAUACCGUGUACGACCCUCUGCAGCCCGAGCUGGACAGCUUCAAAGAGGAACUGGACAAGUACUUUAAGAACCACACAAGCCCCGACGUGGACCUGGGCGAUAUCAGCGGAAUCAAUGCCAGCGUGGUCAACAUCCAGAAAGAGAUCGACCGGCUGAACGAGGUGGCCAAGAAUCUGAACGAGAGCCUGAUCGACCUCCAAGAACUGGGGAAGUACGAGCAGUACAUCAAGUGGCCUUGGUACAUCUGGCUGGGCUUUAUCGCCGGACUGAUUGCCAUCGUGAUGGUCACAAUCAUGCUGUGCUGCAUGACCAGCUGCUGUAGCUGCCUGAAGGGCUGUUGUAGCUGUGGCAGCUGCUGCAAGUUCGACGAGGACGAUUCUGAGCCCGUGCUGAAAGGCGUGAAGCUGCACUACACCUGA |
133 | SARS-CoV-2_S_PP_δ_opt2 | AUGUUCGUGUUCCUGGUGCUGCUGCCCCUGGUGAGCAGCCAGUGCGUGAACCUCCGCACCCGCACCCAGCUGCCCCCCGCCUACACCAACAGCUUCACCCGCGGCGUGUACUACCCCGACAAGGUGUUCCGCAGCAGCGUGCUGCACAGCACCCAGGACCUGUUCCUGCCCUUCUUCAGCAACGUGACCUGGUUCCACGCCAUCCACGUGAGCGGCACCAACGGCACCAAGCGCUUCGACAACCCCGUGCUGCCCUUCAACGACGGCGUGUACUUCGCCAGCACCGAGAAGAGCAACAUCAUCCGCGGCUGGAUCUUCGGCACCACCCUGGACAGCAAGACCCAGAGCCUGCUGAUCGUGAACAACGCCACCAACGUGGUGAUCAAGGUGUGCGAGUUCCAGUUCUGCAACGACCCCUUCCUGGACGUGUACUACCACAAGAACAACAAGAGCUGGAUGGAGAGCGGCGUGUACAGCAGCGCCAACAACUGCACCUUCGAGUACGUGAGCCAGCCCUUCCUGAUGGACCUGGAGGGCAAGCAGGGCAACUUCAAGAACCUCCGCGAGUUCGUGUUCAAGAACAUCGACGGCUACUUCAAGAUCUACAGCAAGCACACCCCCAUCAACCUGGUGCGCGACCUCCCCCAGGGCUUCAGCGCCCUGGAGCCCCUGGUGGACCUCCCCAUCGGCAUCAACAUCACCCGCUUCCAGACCCUGCUGGCCCUGCACCGCAGCUACCUGACCCCCGGCGACAGCAGCAGCGGCUGGACCGCCGGCGCCGCCGCCUACUACGUGGGCUACCUCCAGCCCCGCACCUUCCUGCUGAAGUACAACGAGAACGGCACCAUCACCGACGCCGUGGACUGCGCCCUGGACCCCCUGAGCGAGACCAAGUGCACCCUGAAGAGCUUCACCGUGGAGAAGGGCAUCUACCAGACCAGCAACUUCCGCGUGCAGCCCACCGAGAGCAUCGUGCGCUUCCCCAACAUCACCAACCUGUGCCCCUUCGGCGAGGUGUUCAACGCCACCCGCUUCGCCAGCGUGUACGCCUGGAACCGCAAGCGCAUCAGCAACUGCGUGGCCGACUACAGCGUGCUGUACAACAGCGCCAGCUUCAGCACCUUCAAGUGCUACGGCGUGAGCCCCACCAAGCUGAACGACCUGUGCUUCACCAACGUGUACGCCGACAGCUUCGUGAUCCGCGGCGACGAGGUGCGCCAGAUCGCCCCCGGCCAGACCGGCAAGAUCGCCGACUACAACUACAAGCUGCCCGACGACUUCACCGGCUGCGUGAUCGCCUGGAACAGCAACAACCUGGACAGCAAGGUGGGCGGCAACUACAACUACCGCUACCGCCUGUUCCGCAAGAGCAACCUGAAGCCCUUCGAGCGCGACAUCAGCACCGAGAUCUACCAGGCCGGCAGCAAGCCCUGCAACGGCGUGGAGGGCUUCAACUGCUACUUCCCCCUGCAGAGCUACGGCUUCCAGCCCACCAACGGCGUGGGCUACCAGCCCUACCGCGUGGUGGUGCUGAGCUUCGAGCUGCUGCACGCCCCCGCCACCGUGUGCGGCCCCAAGAAGAGCACCAACCUGGUGAAGAACAAGUGCGUGAACUUCAACUUCAACGGCCUGACCGGCACCGGCGUGCUGACCGAGAGCAACAAGAAGUUCCUGCCCUUCCAGCAGUUCGGCCGCGACAUCGCCGACACCACCGACGCCGUGCGCGACCCCCAGACCCUGGAGAUCCUGGACAUCACCCCCUGCAGCUUCGGCGGCGUGAGCGUGAUCACCCCCGGCACCAACACCAGCAACCAGGUGGCCGUGCUGUACCAGGGCGUGAACUGCACCGAGGUGCCCGUGGCCAUCCACGCCGACCAGCUGACCCCCACCUGGCGCGUGUACAGCACCGGCAGCAACGUGUUCCAGACCCGCGCCGGCUGCCUGAUCGGCGCCGAGCACGUGAACAACAGCUACGAGUGCGACAUCCCCAUCGGCGCCGGCAUCUGCGCCAGCUACCAGACCCAGACCAACAGCCGCCGCCGCGCCCGCAGCGUGGCCAGCCAGAGCAUCAUCGCCUACACCAUGAGCCUGGGCGCCGAGAACAGCGUGGCCUACAGCAACAACAGCAUCGCCAUCCCCACCAACUUCACCAUCAGCGUGACCACCGAGAUCCUGCCCGUGAGCAUGACCAAGACCAGCGUGGACUGCACCAUGUACAUCUGCGGCGACAGCACCGAGUGCAGCAACCUCCUGCUGCAGUACGGCAGCUUCUGCACCCAGCUGAACCGCGCCCUGACCGGCAUCGCCGUGGAGCAGGACAAGAACACCCAGGAGGUGUUCGCCCAGGUGAAGCAGAUCUACAAGACCCCCCCCAUCAAGGACUUCGGCGGCUUCAACUUCAGCCAGAUCCUGCCCGACCCCAGCAAGCCCAGCAAGCGCAGCUUCAUCGAGGACCUCCUGUUCAACAAGGUGACCCUGGCCGACGCCGGCUUCAUCAAGCAGUACGGCGACUGCCUGGGCGACAUCGCCGCCCGCGACCUGAUCUGCGCCCAGAAGUUCAACGGCCUGACCGUGCUGCCCCCCCUGCUGACCGACGAGAUGAUCGCCCAGUACACCAGCGCCCUGCUGGCCGGCACCAUCACCAGCGGCUGGACCUUCGGCGCCGGCGCCGCCCUGCAGAUCCCCUUCGCCAUGCAGAUGGCCUACCGCUUCAACGGCAUCGGCGUGACCCAGAACGUGCUGUACGAGAACCAGAAGCUGAUCGCCAACCAGUUCAACAGCGCCAUCGGCAAGAUCCAGGACAGCCUGAGCAGCACCGCCAGCGCCCUGGGCAAGCUGCAGAACGUGGUGAACCAGAACGCCCAGGCCCUGAACACCCUGGUGAAGCAGCUGAGCAGCAACUUCGGCGCCAUCAGCAGCGUGCUGAACGACAUCCUGAGCCGCCUGGACCCCCCCGAGGCCGAGGUGCAGAUCGACCGCCUGAUCACCGGCCGCCUGCAGAGCCUGCAGACCUACGUGACCCAGCAGCUGAUCCGCGCCGCCGAGAUCCGCGCCAGCGCCAACCUGGCCGCCACCAAGAUGAGCGAGUGCGUGCUGGGCCAGAGCAAGCGCGUGGACUUCUGCGGCAAGGGCUACCACCUGAUGAGCUUCCCCCAGAGCGCCCCCCACGGCGUGGUGUUCCUGCACGUGACCUACGUGCCCGCCCAGGAGAAGAACUUCACCACCGCCCCCGCCAUCUGCCACGACGGCAAGGCCCACUUCCCCCGCGAGGGCGUGUUCGUGAGCAACGGCACCCACUGGUUCGUGACCCAGCGCAACUUCUACGAGCCCCAGAUCAUCACCACCGACAACACCUUCGUGAGCGGCAACUGCGACGUGGUGAUCGGCAUCGUGAACAACACCGUGUACGACCCCCUGCAGCCCGAGCUGGACAGCUUCAAGGAGGAGCUGGACAAGUACUUCAAGAACCACACCAGCCCCGACGUGGACCUGGGCGACAUCAGCGGCAUCAACGCCAGCGUGGUGAACAUCCAGAAGGAGAUCGACCGCCUGAACGAGGUGGCCAAGAACCUGAACGAGAGCCUGAUCGACCUCCAGGAGCUGGGCAAGUACGAGCAGUACAUCAAGUGGCCCUGGUACAUCUGGCUGGGCUUCAUCGCCGGCCUGAUCGCCAUCGUGAUGGUGACCAUCAUGCUGUGCUGCAUGACCAGCUGCUGCAGCUGCCUGAAGGGCUGCUGCAGCUGCGGCAGCUGCUGCAAGUUCGACGAGGACGACAGCGAGCCCGUGCUGAAGGGCGUGAAGCUGCACUACACCUAA |
134 | SARS-CoV-2_S_stab_δ_opt2 | AUGUUCGUGUUCCUGGUGCUGCUGCCCCUGGUGAGCAGCCAGUGCGUGAACCUCCGCACCCGCACCCAGCUGCCCCCCGCCUACACCAACAGCUUCACCCGCGGCGUGUACUACCCCGACAAGGUGUUCCGCAGCAGCGUGCUGCACAGCACCCAGGACCUGUUCCUGCCCUUCUUCAGCAACGUGACCUGGUUCCACGCCAUCCACGUGAGCGGCACCAACGGCACCAAGCGCUUCGACAACCCCGUGCUGCCCUUCAACGACGGCGUGUACUUCGCCAGCACCGAGAAGAGCAACAUCAUCCGCGGCUGGAUCUUCGGCACCACCCUGGACAGCAAGACCCAGAGCCUGCUGAUCGUGAACAACGCCACCAACGUGGUGAUCAAGGUGUGCGAGUUCCAGUUCUGCAACGACCCCUUCCUGGACGUGUACUACCACAAGAACAACAAGAGCUGGAUGGAGAGCGGCGUGUACAGCAGCGCCAACAACUGCACCUUCGAGUACGUGAGCCAGCCCUUCCUGAUGGACCUGGAGGGCAAGCAGGGCAACUUCAAGAACCUCCGCGAGUUCGUGUUCAAGAACAUCGACGGCUACUUCAAGAUCUACAGCAAGCACACCCCCAUCAACCUGGUGCGCGACCUCCCCCAGGGCUUCAGCGCCCUGGAGCCCCUGGUGGACCUCCCCAUCGGCAUCAACAUCACCCGCUUCCAGACCCUGCUGGCCCUGCACCGCAGCUACCUGACCCCCGGCGACAGCAGCAGCGGCUGGACCGCCGGCGCCGCCGCCUACUACGUGGGCUACCUCCAGCCCCGCACCUUCCUGCUGAAGUACAACGAGAACGGCACCAUCACCGACGCCGUGGACUGCGCCCUGGACCCCCUGAGCGAGACCAAGUGCACCCUGAAGAGCUUCACCGUGGAGAAGGGCAUCUACCAGACCAGCAACUUCCGCGUGCAGCCCACCGAGAGCAUCGUGCGCUUCCCCAACAUCACCAACCUGUGCCCCUUCGGCGAGGUGUUCAACGCCACCCGCUUCGCCAGCGUGUACGCCUGGAACCGCAAGCGCAUCAGCAACUGCGUGGCCGACUACAGCGUGCUGUACAACAGCGCCAGCUUCAGCACCUUCAAGUGCUACGGCGUGAGCCCCACCAAGCUGAACGACCUGUGCUUCACCAACGUGUACGCCGACAGCUUCGUGAUCCGCGGCGACGAGGUGCGCCAGAUCGCCCCCGGCCAGACCGGCAAGAUCGCCGACUACAACUACAAGCUGCCCGACGACUUCACCGGCUGCGUGAUCGCCUGGAACAGCAACAACCUGGACAGCAAGGUGGGCGGCAACUACAACUACCGCUACCGCCUGUUCCGCAAGAGCAACCUGAAGCCCUUCGAGCGCGACAUCAGCACCGAGAUCUACCAGGCCGGCAGCAAGCCCUGCAACGGCGUGGAGGGCUUCAACUGCUACUUCCCCCUGCAGAGCUACGGCUUCCAGCCCACCAACGGCGUGGGCUACCAGCCCUACCGCGUGGUGGUGCUGAGCUUCGAGCUGCUGCACGCCCCCGCCACCGUGUGCGGCCCCAAGAAGAGCACCAACCUGGUGAAGAACAAGUGCGUGAACUUCAACUUCAACGGCCUGACCGGCACCGGCGUGCUGACCGAGAGCAACAAGAAGUUCCUGCCCUUCCAGCAGUUCGGCCGCGACAUCGCCGACACCACCGACGCCGUGCGCGACCCCCAGACCCUGGAGAUCCUGGACAUCACCCCCUGCAGCUUCGGCGGCGUGAGCGUGAUCACCCCCGGCACCAACACCAGCAACCAGGUGGCCGUGCUGUACCAGGGCGUGAACUGCACCGAGGUGCCCGUGGCCAUCCACGCCGACCAGCUGACCCCCACCUGGCGCGUGUACAGCACCGGCAGCAACGUGUUCCAGACCCGCGCCGGCUGCCUGAUCGGCGCCGAGCACGUGAACAACAGCUACGAGUGCGACAUCCCCAUCGGCGCCGGCAUCUGCGCCAGCUACCAGACCCAGACCAACAGCCGCGGCAGCGCCAGCAGCGUGGCCAGCCAGAGCAUCAUCGCCUACACCAUGAGCCUGGGCGCCGAGAACAGCGUGGCCUACAGCAACAACAGCAUCGCCAUCCCCACCAACUUCACCAUCAGCGUGACCACCGAGAUCCUGCCCGUGAGCAUGACCAAGACCAGCGUGGACUGCACCAUGUACAUCUGCGGCGACAGCACCGAGUGCAGCAACCUCCUGCUGCAGUACGGCAGCUUCUGCACCCAGCUGAACCGCGCCCUGACCGGCAUCGCCGUGGAGCAGGACAAGAACACCCAGGAGGUGUUCGCCCAGGUGAAGCAGAUCUACAAGACCCCCCCCAUCAAGGACUUCGGCGGCUUCAACUUCAGCCAGAUCCUGCCCGACCCCAGCAAGCCCAGCAAGCGCAGCCCCAUCGAGGACCUCCUGUUCAACAAGGUGACCCUGGCCGACGCCGGCUUCAUCAAGCAGUACGGCGACUGCCUGGGCGACAUCGCCGCCCGCGACCUGAUCUGCGCCCAGAAGUUCAACGGCCUGACCGUGCUGCCCCCCCUGCUGACCGACGAGAUGAUCGCCCAGUACACCAGCGCCCUGCUGGCCGGCACCAUCACCAGCGGCUGGACCUUCGGCGCCGGCCCCGCCCUGCAGAUCCCCUUCCCCAUGCAGAUGGCCUACCGCUUCAACGGCAUCGGCGUGACCCAGAACGUGCUGUACGAGAACCAGAAGCUGAUCGCCAACCAGUUCAACAGCGCCAUCGGCAAGAUCCAGGACAGCCUGAGCAGCACCCCCAGCGCCCUGGGCAAGCUGCAGAACGUGGUGAACCAGAACGCCCAGGCCCUGAACACCCUGGUGAAGCAGCUGAGCAGCAACUUCGGCGCCAUCAGCAGCGUGCUGAACGACAUCCUGAGCCGCCUGGACCCCCCCGAGGCCGAGGUGCAGAUCGACCGCCUGAUCACCGGCCGCCUGCAGAGCCUGCAGACCUACGUGACCCAGCAGCUGAUCCGCGCCGCCGAGAUCCGCGCCAGCGCCAACCUGGCCGCCACCAAGAUGAGCGAGUGCGUGCUGGGCCAGAGCAAGCGCGUGGACUUCUGCGGCAAGGGCUACCACCUGAUGAGCUUCCCCCAGAGCGCCCCCCACGGCGUGGUGUUCCUGCACGUGACCUACGUGCCCGCCCAGGAGAAGAACUUCACCACCGCCCCCGCCAUCUGCCACGACGGCAAGGCCCACUUCCCCCGCGAGGGCGUGUUCGUGAGCAACGGCACCCACUGGUUCGUGACCCAGCGCAACUUCUACGAGCCCCAGAUCAUCACCACCGACAACACCUUCGUGAGCGGCAACUGCGACGUGGUGAUCGGCAUCGUGAACAACACCGUGUACGACCCCCUGCAGCCCGAGCUGGACAGCUUCAAGGAGGAGCUGGACAAGUACUUCAAGAACCACACCAGCCCCGACGUGGACCUGGGCGACAUCAGCGGCAUCAACGCCAGCGUGGUGAACAUCCAGAAGGAGAUCGACCGCCUGAACGAGGUGGCCAAGAACCUGAACGAGAGCCUGAUCGACCUCCAGGAGCUGGGCAAGUACGAGCAGUACAUCAAGUGGCCCUGGUACAUCUGGCUGGGCUUCAUCGCCGGCCUGAUCGCCAUCGUGAUGGUGACCAUCAUGCUGUGCUGCAUGACCAGCUGCUGCAGCUGCCUGAAGGGCUGCUGCAGCUGCGGCAGCUGCUGCAAGUUCGACGAGGACGACAGCGAGCCCGUGCUGAAGGGCGUGAAGCUGCACUACACCUAA |
Wu, F., Zhao, S., Yu, B.等人. 一種在中國的新的與人類呼吸道疾病有關的冠狀病毒(A new coronavirus associated with human respiratory disease in China). 自然(Nature)579, 265-269 (2020)。
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現具體參照圖式,欲強調者係所顯示的具體態樣僅係舉例及為了說明性討論本發明之不同實施方式的目的。其等係為了提供被認為最有用且最容易敘述本發明之原理及概念方面者而呈現。於此方面,未嘗試以超過基本了解本發明所需者的細節來顯示本發明之結構細節。以下敘述加上圖式使得對於發明所屬技術領域中具有通常知識者而言本發明之數種形式可如何實際實施變得很明顯。
[ 圖 1] :小鼠中的 mRNA 構築體編碼的 SARS-CoV-2 表位之免疫原性。以5 µg的劑量的mRNA疫苗組成物肌肉內注射(於第0日及第21日)雌性BALB/c小鼠(6-8週大)。作為陰性對照組,以緩衝液(TBS)疫苗接種一組小鼠。於使用mRNA-LNP的基礎劑/追加劑疫苗接種之後,使用編碼串聯的源自SARS-CoV-2之非結構性蛋白質之保守性區域的表位的mRNA的疫苗接種誘發強力的表位專一性CD8 T細胞反應。
[ 圖 2] :於使用一劑量 - 範圍量的經 LNP 調配 mRNA 疫苗的小鼠之基礎劑( 21 日)及追加劑( 35 日)肌肉內疫苗接種之後的抗原( SARS-CoV-2 棘 δ )專一性血清免疫球蛋白( IgG1 及 IgG2a )效價。所指出的劑量(0.2至10 ug)對應於在各注射事件時向單一小鼠遞送的棘-δ mRNA之量且係mRNA之總量之一半,因為此係含有相同量的構築體2.3 mRNA的組合。如於以下者所見,有清楚的疫苗之功效:相對高的IgG效價、自d21至d35的極可見的追加功效、及高於1 μg的mRNA的高原期效應。所包括的空LNP組在調配物中不含任何mRNA且係基於其他組之計算製備以含有相同量的脂質作為較高的劑
[ 圖 3] :於以對應於疫苗接種抗原( SARS-CoV-2 棘, δ )的胜肽文庫再刺激之後的 CD8+ 多功能 T 細胞反應。於第35日時(最終)自相同的組(以不同劑量的由等量的棘δ mRNA及構築體2.3組成的對抗SARS-CoV-2的經LNP調配mRNA疫苗疫苗接種2次的動物)收集脾細胞,並以掃描完整棘蛋白的胜肽之混合物再刺激並藉由流式細胞測量術分析。於再刺激後,對於表現IFNg(及CD107a)的CD8+ T細胞,吾人看到清楚的劑量-範圍反應。
[
圖
4]
:
SARS-CoV-2
構築體
2.1_DCL
(
SEQ ID NO: 95
)之串聯的序列。
[
圖
5]
:
SARS-CoV-2
構築體
2.2_DCL
(
SEQ ID NO: 96
)之串聯的序列。
[
圖
6]
:
SARS-CoV-2
構築體
2.2.2_DCL
(
SEQ ID NO: 98
)之串聯的序列
[
圖
7]
:
SARS-CoV-2
構築體
2.3_DCL
(
SEQ ID NO: 99
)之串聯的序列
[
圖
8]
:
SARS-CoV-2
構築體
2.4_DCL
(
SEQ ID NO: 100
)之串聯的序列
[
圖
9]
:
SARS-CoV-2
構築體
2.4.1_DCL
(
SEQ ID NO: 101
)之串聯的序列
[
圖
10]
:
SARS-CoV-2
構築體
2.4.2_DCL
(
SEQ ID NO: 102
)之串聯的序列
[
圖
11]
:
SARS-CoV-2
構築體
2.5_DCL
(
SEQ ID NO: 103
)之串聯的序列
無
TW202406929A_112116809_SEQL.xml
Claims (13)
- 一種編碼源自冠狀病毒的胜肽或其功能性變體及/或其片段的多表位核酸構築體,其中該等胜肽、其變體、及/或其片段包含與SEQ ID NO: 1、2、7、9、10、12、13、16、18、19、20、24、28、31、32、33、35、37、42、及44具有至少95%序列一致性的胺基酸序列。
- 如請求項1之多表位構築體,其中該構築體包含選自包含以下者的清單的序列:SEQ ID NO: 116、117、或118,尤其117;或與其等具有至少95%序列一致性的序列。
- 如請求項1-2中任一項之多表位構築體,其進一步包含一或多種編碼冠狀病毒醣蛋白(尤其SARS-CoV-2棘醣蛋白)或其功能性變體及/或其片段的核酸序列。
- 一種組合,其包含如請求項1至3中任一項之多表位構築體及包含一或多種編碼冠狀病毒醣蛋白(尤其SARS-CoV-2棘醣蛋白)或其功能性變體及/或其片段的核酸序列的構築體。
- 如請求項1至3中任一項之多表位構築體或如請求項4之組合,其中該所編碼的胜肽或其功能性變體及/或其片段以至少一個選自包含以下者的清單的分子連接子分開:可彎曲連接子、不可彎曲連接子、及/或可切割連接子。
- 一種多肽,其由如請求項1至3或5中任一項之多表位構築體編碼。
- 一種醫藥組成物,其包含如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、或如請求項6之多肽、及至少一種醫藥上可接受的劑。
- 如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項7之醫藥組成物,其係在脂質體或奈米粒子(諸如脂質奈米粒子或聚合奈米粒子,尤其脂質奈米粒子)中調配。
- 一種如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項8之醫藥組成物,其用於人類或獸醫醫學。
- 一種如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項8之醫藥組成物,其用於疫苗接種,尤其肌肉內疫苗接種。
- 一種如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項8之醫藥組成物,其用於在個體中誘發對抗冠狀病毒(尤其SARS-CoV-2病毒)的免疫反應。
- 一種如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項8之醫藥組成物,其用於在個體中治療或預防冠狀病毒(尤其SARS-CoV-2病毒)感染。
- 一種誘發對抗冠狀病毒的免疫反應之方法,其包含: 向個體投予治療有效量的如請求項1至3或5中任一項之多表位構築體、如請求項4之組合、如請求項6之多肽、或如請求項8之醫藥組成物。
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EP1832603B1 (de) | 2001-06-05 | 2010-02-03 | CureVac GmbH | Stabilisierte mRNA mit erhöhtem G/C-Gehalt, enkodierend für ein bakterielles Antigen sowie deren Verwendung |
WO2017127750A1 (en) | 2016-01-22 | 2017-07-27 | Modernatx, Inc. | Messenger ribonucleic acids for the production of intracellular binding polypeptides and methods of use thereof |
AU2021213108A1 (en) | 2020-01-28 | 2022-08-18 | Modernatx, Inc. | Coronavirus RNA vaccines |
JP2023515387A (ja) * | 2020-02-14 | 2023-04-13 | エピバックス・インコーポレーテッド | Covid-19の予防、診断および治療に有用なt細胞エピトープクラスターおよび関連組成物 |
MX2022011671A (es) | 2020-03-20 | 2023-01-24 | BioNTech SE | Vacunas contra el coronavirus y metodos de uso. |
WO2022043551A2 (en) * | 2020-08-31 | 2022-03-03 | Curevac Ag | Multivalent nucleic acid based coronavirus vaccines |
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