TW202305146A - Method for detecting the risk of seronegative arthritis associated with psoriatic arthritis and ankylosing spondylitis and the risk of back pain caused by inflammatory bowel disease by microribonucleic acid - Google Patents

Method for detecting the risk of seronegative arthritis associated with psoriatic arthritis and ankylosing spondylitis and the risk of back pain caused by inflammatory bowel disease by microribonucleic acid Download PDF

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TW202305146A
TW202305146A TW110126858A TW110126858A TW202305146A TW 202305146 A TW202305146 A TW 202305146A TW 110126858 A TW110126858 A TW 110126858A TW 110126858 A TW110126858 A TW 110126858A TW 202305146 A TW202305146 A TW 202305146A
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mirna
arthritis
ankylosing spondylitis
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seronegative
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蘇昱日
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長庚醫療財團法人高雄長庚紀念醫院
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Abstract

The present invention is related to a method for detecting the risk of seronegative arthritis associated with psoriatic arthritis and ankylosing spondylitis and the risk of back pain caused by inflammatory bowel disease by microribonucleic acid(miRNA). The method includes measuring the expression level of at least one miRNA disclosed herein in a test sample of a subject, comparing the expression level of the at least one miRNA in the test sample with that of a seronegative arthritis-free sample or a back pain-free sample, and identifying the subject as having seronegative arthritis or back pain, or at risk of developing seronegative arthritis associated with psoriatic arthritis and ankylosing spondylitis or back pain caused by inflammatory bowel disease if the expression levels of the at least one miRNA in the test sample is higher relative to the expression level of the corresponding miRNA in the arthritis-free sample or a back pain-free sample.

Description

利用微小核醣核酸檢測合併乾癬性關節炎及僵直性脊椎炎之血清陰性關節炎風險與發炎性腸炎引起的相關性背痛風險的方法及其應用Method and application of using microRNA to detect the risk of seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis and the risk of associated back pain caused by inflammatory bowel disease

本發明係關於一種利用微小核醣核酸檢測血清陰性關節炎風險的方法及其應用,特別係關於一種利用血漿中微小核醣核酸檢測合併乾癬性關節炎及僵直性脊椎炎之血清陰性關節炎風險與發炎性腸炎引起的相關性背痛風險的方法及其應用。The present invention relates to a method for detecting the risk of seronegative arthritis using microRNA and its application, in particular to a method for detecting the risk and inflammation of seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis using microRNA in plasma The method and its application to the risk of associated back pain caused by enteritis.

血清陰性關節炎是一種全身性疾病,包含可能涉及皮膚、關節、指甲、腎臟、血管系統和心臟,並且可能發展成相關癌症。常見特徵包括沒有類風濕因子(RF)以及與HLA-B27的強遺傳關聯。Seronegative arthritis is a systemic disease that includes possible involvement of the skin, joints, nails, kidneys, vascular system, and heart, and may develop into associated cancers. Common features include the absence of rheumatoid factor (RF) and a strong genetic association with HLA-B27.

與正常對照組相比,血清陰性關節炎血清包含乾癬性關節炎、反應性關節炎及僵直性脊椎炎,而同時具有乾癬性關節炎及僵直性脊椎炎合併體質之患者,其關節之惡化尤為嚴重。Compared with the normal control group, seronegative arthritis serum contained psoriatic arthritis, reactive arthritis, and ankylosing spondylitis, and patients with combined constitutions of psoriatic arthritis and ankylosing spondylitis had particularly worsening joints serious.

最近的一項研究報導指出,皮膚科診所的乾癬病患者中,乾癬性關節炎(psoriatic arthritis, PSA)的患病率約為17%。乾癬性關節炎為慢性發炎性疾病,涉及與乾癬相關之進行性關節病(progressive arthropathy)。大約30%具有乾癬的患者估計具有乾癬性關節炎。通常,在PSA發病之前約10年為皮膚之表現(manifestations)。Haroon et al. (Annals of the rheumatic diseases 2015;74(6):1045-50)報導了超過6個月的乾癬性關節炎診斷延遲造成PSA的患者之不良放射線影像學結果及不良的功能性結果。早期診斷與及時介入為避免永久性關節變形及破壞的關鍵。目前,PSA的診斷主要基於臨床表現型。至今並沒有早期偵測PSA之標準且可靠的評估方法,導致許多具有乾癬的患者未確診乾癬性關節炎造成不佳治療結果(Veale DJ et al., Lancet 2018;391(10136):2273-84)。A recent study reported that the prevalence of psoriatic arthritis (PSA) was approximately 17% among patients with psoriasis in dermatology clinics. Psoriatic arthritis is a chronic inflammatory disease involving progressive arthritis associated with psoriasis. Approximately 30% of patients with psoriasis are estimated to have psoriatic arthritis. Typically, cutaneous manifestations precede the onset of PSA about 10 years. Haroon et al. (Annals of the rheumatic diseases 2015;74(6):1045-50) reported adverse radiographic findings and poor functional outcomes in patients with PSA due to delayed diagnosis of psoriatic arthritis over 6 months . Early diagnosis and timely intervention are the keys to avoid permanent joint deformation and destruction. Currently, the diagnosis of PSA is mainly based on clinical phenotype. So far there is no standard and reliable assessment method for early detection of PSA, resulting in many patients with psoriasis undiagnosed psoriatic arthritis leading to poor treatment outcomes (Veale DJ et al., Lancet 2018; 391(10136): 2273-84 ).

僵直性脊椎炎(ankylosing spondylitis, AS),是一個脊椎關節的慢性發炎性疾病,好發於20至40歲之年輕男性,但女性也可能得到此疾病;典型的僵直性脊椎炎症狀為:慢性下背痛、晨間脊椎僵硬及運動範圍受限。於休息時更明顯,尤以早晨剛起床時間為最為嚴重(通常大於一小時),嚴重時病人甚至會在半夜因痠痛及僵硬感而醒過來,這種背痛及晨僵現象在活動過後症狀會減輕。診斷僵直性脊椎炎主要是經由詳細的病史詢問、根據臨床症狀、理學檢查及X光攝影(必需看到有雙側腸薦骨關節炎),必要時抽血檢查患者血液之HLA-B27抗原,一起綜合判斷而診斷僵直性脊椎炎,故其診斷尤為困難。Ankylosing spondylitis (AS) is a chronic inflammatory disease of the spine joints, which occurs in young men aged 20 to 40, but women may also get this disease; typical symptoms of ankylosing spondylitis are: chronic Low back pain, morning spine stiffness, and limited range of motion. It is more obvious when you are resting, especially when you just wake up in the morning (usually more than one hour). In severe cases, the patient may even wake up in the middle of the night due to soreness and stiffness. will lighten. The diagnosis of ankylosing spondylitis is mainly based on detailed medical history inquiry, clinical symptoms, physical examination and X-ray photography (must see bilateral intestinal sacral arthritis), if necessary, blood test for HLA-B27 antigen in blood Ankylosing spondylitis is diagnosed by comprehensive judgment, so its diagnosis is particularly difficult.

即使在超音波檢查的幫助下,血清陰性關節炎的早期檢測和診斷仍然對風濕病學家構成挑戰。馬德里超聲血清陰性關節炎指數(MASEI)對血清陰性關節炎的診斷敏感性僅有30%。即使病人有明顯的症狀,要確定診斷為血清陰性關節炎,要延遲至少兩年以上的時間。2020年Mayo Clinic的研究也顯示,這樣延遲診斷的現象自2000 年到2017 年都沒有太大的進步。Even with the aid of ultrasound, early detection and diagnosis of seronegative arthritis remains a challenge for rheumatologists. The sensitivity of the Madrid Ultrasound Seronegative Arthritis Index (MASEI) for seronegative arthritis is only 30%. Even if the patient has obvious symptoms, there is a delay of at least two years before a definitive diagnosis of seronegative arthritis is made. A Mayo Clinic study in 2020 also showed that such delayed diagnosis has not improved much from 2000 to 2017.

微小核醣核酸(miRNA)是進化的保守且非編碼RNA分子,其通常長度為21至25個核苷酸,且藉由結合至mRNA的3端未轉譯區(3’-untranslated regions, 3’-UTRs)來作用,而可抑制蛋白質轉譯或促進mRNA降解(參見 Griffiths-Jones S (2004). The microRNA Registry. Nucleic acids research 32: D109-111)。MicroRNAs (miRNAs) are evolutionarily conserved and non-coding RNA molecules, usually 21 to 25 nucleotides in length, and UTRs) to inhibit protein translation or promote mRNA degradation (see Griffiths-Jones S (2004). The microRNA Registry. Nucleic acids research 32: D109-111).

然而,現今的miRNA生物標誌的研究較少應用於臨床診斷。因此,利用miRNA發展出早期檢測和確認血清陰性關節炎,尤其是同時具有乾癬性關節炎及僵直性脊椎炎之檢測方法的需求仍未被滿足,而本發明滿足該需求和其他需求。However, the current studies on miRNA biomarkers are rarely used in clinical diagnosis. Therefore, there remains an unmet need for the development of early detection and confirmation of seronegative arthritis, especially both psoriatic arthritis and ankylosing spondylitis, using miRNA, and the present invention satisfies this and other needs.

有鑑於上述問題,本發明之目的在於提供一種以致病機理為導向的新方法,以區分合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎患者;目前已發現藉由血漿中微小核醣核酸檢測網絡進行表觀遺傳調控,是控制免疫系統生理和病理狀況的關鍵因素,某些血漿中微小核醣核酸檢測的差異表達可能決定罹患血清陰性關節炎和無血清陰性關節炎之間的臨床結果不同;由此可知,特定的血漿中微小核醣核酸可能被用做血清學標誌物,以改善目前可用於有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎患者早期診斷的有限臨床檢測。In view of the above problems, the purpose of the present invention is to provide a new method oriented by pathogenic mechanism to distinguish patients with seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis; Epigenetic regulation of the RNA detection network is a key factor controlling the physiological and pathological conditions of the immune system, and differential expression of certain microRNA detections in plasma may determine the clinical difference between those with and without seronegative arthritis The results were mixed; thus, specific microRNAs in plasma may be used as serological markers to improve the limited current available for early diagnosis of seronegative arthritis patients with concurrent psoriatic arthritis and ankylosing spondylitis. clinical testing.

為找出可用以檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的血漿中微小核醣核酸,進行了基於定量聚合酶連鎖反應(Quantitative Polymerase chain reaction, qPCR)的研究;qPCR技術係利用專一的引子探針(primer probe)會在PCR過程中產生螢光,再利用螢光偵測系統來偵測每個循環(cycle)所釋放出的螢光量,進而推算出每個循環中所產生的產物產量,達到即時定量的目的。In order to find out the microRNA in plasma that can be used to detect seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, a study based on quantitative polymerase chain reaction (qPCR) was carried out; qPCR technology It uses a specific primer probe (primer probe) to generate fluorescence during the PCR process, and then uses a fluorescence detection system to detect the amount of fluorescence released in each cycle (cycle), and then calculates the amount of fluorescence in each cycle. The resulting product yield can achieve the purpose of real-time quantification.

使用qPCR技術,針對乾癬性關節炎和乾癬病患者之間的149種血漿中微小核醣核酸檢測特性結果進行前瞻性的比較,找出10種具有不同差異表達的血漿中微小核醣核酸檢測;將上述10種具有不同差異表達的血漿中微小核醣核酸檢測,與來自健康個體樣本的血漿中微小核醣核酸檢測作為對照組進行比較,根據具有差異表達的血漿中微小核醣核酸檢測描述的基因本體論,對乾癬性關節炎疾病患者定義了幾種關鍵發炎途徑。Using qPCR technology, a prospective comparison was made between the detection characteristics of 149 microRNAs in plasma between patients with psoriatic arthritis and psoriasis, and 10 microRNAs in plasma with different differential expressions were found; The detection of 10 microRNAs in plasma with different differential expressions was compared with the detection of microRNAs in plasma from healthy individual samples as a control group. According to the Gene Ontology described by the detection of microRNAs in plasma with differential expression, the Several key inflammatory pathways are defined in patients with psoriatic arthritis disease.

接著,尋找了僵直性脊椎炎及發炎性腸炎的患者,抽取其體液對其血漿中微小核醣核酸進行qPCR,驗證具有差異表達的5種血漿中微小核醣核酸檢測後,確認了3種不同的血漿中微小核醣核酸檢測可以代表乾癬性關節炎和僵直性脊椎炎的合併體質,其分別為miRNA-140-5p、miRNA-192-5p以及miRNA-146a-5p等3種血漿中微小核醣核酸,如下表1所示。Then, patients with ankylosing spondylitis and inflammatory bowel disease were searched, and their body fluids were extracted to perform qPCR on the microRNAs in their plasma to verify the detection of 5 microRNAs in plasma with differential expression, and three different plasma microRNAs were confirmed. Detection of microRNAs in microRNAs can represent the combined constitution of psoriatic arthritis and ankylosing spondylitis, which are three microRNAs in plasma, namely miRNA-140-5p, miRNA-192-5p, and miRNA-146a-5p, as follows Table 1 shows.

表1 miRNA名稱 序列編號 miRNA-140-5p SEQ ID NO:1 miRNA-192-5p SEQ ID NO:2 miRNA-146a-5p SEQ ID NO:3 Table 1 miRNA name serial number miRNA-140-5p SEQ ID NO:1 miRNA-192-5p SEQ ID NO:2 miRNA-146a-5p SEQ ID NO:3

當測試樣本中的上述3種miRNA之至少一者的表達水平高於無合併乾癬性關節炎及僵直性脊椎炎之血清陰性關節炎的樣本中對應的miRNA時,則表示所述個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險。When the expression level of at least one of the above-mentioned 3 miRNAs in the test sample is higher than the corresponding miRNA in the sample without seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, it means that the individual has combined seronegative arthritis with psoriatic arthritis and ankylosing spondylitis or at risk for seronegative arthritis with combined psoriatic arthritis and ankylosing spondylitis.

當測試樣本中的上述3種miRNA的表達水平高於無合併乾癬性關節炎及僵直性脊椎炎之血清陰性關節炎的樣本中對應的3種miRNA時,則表示所述個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險。When the expression levels of the above three miRNAs in the test sample are higher than the corresponding three miRNAs in the samples without seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, it means that the individual has combined psoriatic arthritis and ankylosing spondylitis. seronegative arthritis with arthritis and ankylosing spondylitis or at risk for seronegative arthritis with combined psoriatic arthritis and ankylosing spondylitis.

綜上所述,藉由特定的微小核醣核酸檢測結果之差異表達,可用於檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎,抑或用於預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險,且檢測微小核醣核酸相當方便,可快速篩選出相同發炎途徑之患者,尤其是乾癬性關節炎及僵直性脊椎炎合併體質之患者,進行早期之風險診斷,可避免關節炎之惡化並防止錯過治療之黃金時機。In summary, the differential expression of specific microRNA detection results can be used to detect seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, or to predict the combination of psoriatic arthritis and ankylosing spondylitis The risk of seronegative arthritis of sexual spondylitis, and the detection of microRNA is very convenient, and can quickly screen out patients with the same inflammatory pathway, especially patients with psoriatic arthritis and ankylosing spondylitis combined constitution, for early risk analysis Diagnosis can prevent the deterioration of arthritis and prevent the golden opportunity of treatment from being missed.

本發明的實施例藉由以下範例進行描述,其不以任何方式解釋為對其範圍施加限制。反之,應清楚理解的是,在不脫離本發明的精神的情況下,對於所屬領域技術中具有通常知識者而言,在閱讀本說明書之後,可以想到其他各種實施例、修改及其等效物。除非另外說明,在下列範例所述的研究中,遵循常規程序。下文描述的部分程序用於說明性目的。Embodiments of the present invention are described by way of the following examples, which are not to be construed as limiting its scope in any way. On the contrary, it should be clearly understood that, without departing from the spirit of the present invention, other various embodiments, modifications and equivalents thereof can be conceived by those skilled in the art after reading this specification. . In the studies described in the following exemplars, conventional procedures were followed unless otherwise stated. Some of the procedures described below are for illustrative purposes.

在申請專利範圍中用語「或」的使用意為「及/或」。The use of the word "or" in the claims means "and/or".

當本說明書及申請專利範圍使用字詞「包含」、「具有」、或「含有」為涵蓋或開放式的且不排除額外的、未列舉的元件或方法步驟。When the wording "comprising", "having", or "comprising" is used in this specification and claims, it is intended to be inclusive or open-ended and does not exclude additional, unlisted elements or method steps.

本文所使用的「患者」或「受試者」指的是經診斷具有乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或疑似具有發展乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎之風險的哺乳類受試者。例示性的受試者可為人類、人猿、狗、豬、牛、貓、馬、羊、綿羊、齧齒類及其他可發展乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的哺乳類。"Patient" or "subject" as used herein refers to a seronegative arthritis diagnosed with psoriatic arthritis and ankylosing spondylitis or suspected of developing psoriatic arthritis and ankylosing spondylitis Mammalian subjects with negative arthritis risk. Exemplary subjects are humans, apes, dogs, pigs, cows, cats, horses, sheep, sheep, rodents and other mammals that can develop seronegative arthritis of psoriatic arthritis and ankylosing spondylitis.

如本文中可替換使用的「微小RNA(microRNA)」、「微小RNA(miR)」或「微小RNA(miRNA)」指的是來自miR基因之未經加工的(如:前驅物)、或經加工的(如:成熟的)的RNA轉錄本(transcript)。微小RNA為在真核生物中負調控基因表現並構成新穎類基因調節子(regulators)的內源非編碼單股RNA(Chua, et al. (2009) Curr. Opin. Mol. Ther. 11:189-199)。個別的miRNAs在不同生物體中被鑑別與定序,並給予其名稱。本文提供miRNAs的名稱及其序列。"MicroRNA (microRNA)", "microRNA (miR)" or "microRNA (miRNA)" as used interchangeably herein refers to unprocessed (e.g.: precursors), or processed Processed (eg, mature) RNA transcripts. MicroRNAs are endogenous non-coding single-stranded RNAs that negatively regulate gene expression in eukaryotes and constitute a novel class of gene regulators (Chua, et al. (2009) Curr. Opin. Mol. Ther. 11:189 -199). Individual miRNAs have been identified, sequenced and given names in different organisms. The names of miRNAs and their sequences are provided herein.

本文的所有數目應被理解為藉由「大約」修飾,係意於涵蓋特定值的±10%的變異,當例如這些變異適合為miRNA量的表現。All numbers herein are to be understood as modified by "about" and are meant to cover a variation of ±10% of the specified value when, for example, these variations are appropriate to be indicative of the amount of miRNA.

「較高」的miRNA表現為相對的用語,且可藉由在測試樣本中與已知為無乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎受試者之參考池(referenced pool)比較miRNA 表現量決定。"Higher" miRNAs appear in relative terms and can be compared in test samples with a referenced pool of seronegative arthritis subjects known to be free of psoriatic arthritis and ankylosing spondylitis Comparison of miRNA expression levels determines.

本文所使用的用語「樣本」指的是包含miRNA的樣本。樣本可利用來偵測感興趣miRNA的存在及/或表現量。儘管被預測為含有與正常對照組相較為不同表現的miRNA生物液體與器官最適合。在一些實施例中,例如像是血液或其成分的樣本相對容易取得。樣本的非限制例包含體液(例如,周邊血液)、細胞(例如,血球細胞)及組織(例如,活檢標本或關節液)較佳地,樣本可選自由生物檢體、血液、血漿、血清、淋巴液、骨髓、唾液及其組合所組成之群組。The term "sample" as used herein refers to a sample comprising miRNA. Samples can be used to detect the presence and/or expression of miRNAs of interest. Although predicted to contain miRNAs that behave differently compared to normal controls, biological fluids and organs are most suitable. In some embodiments, samples such as blood or components thereof are relatively easy to obtain. Non-limiting examples of samples include bodily fluids (e.g., peripheral blood), cells (e.g., blood cells) and tissues (e.g., biopsy specimens or joint fluid). Preferably, samples may be selected from biological samples, blood, plasma, serum, The group consisting of lymph, bone marrow, saliva and their combinations.

miRNA的表現量的測量指的是量化存在樣本中miRNA的數量。特定或任何miRNA的表現量的測量可使用任何本發明技術領域中具有通常知識者所習知或如藉由即時聚合酶連鎖反應(real-time PCR)、北方墨點法(Northern blot)分析之本文所述的方法達成。miRNA的表現量的測量包含測量成熟形式的miRNA或與miRNA的表現相關之前驅物形式的表現。The measurement of miRNA expression refers to the quantification of the amount of miRNA present in a sample. The measurement of the expression level of specific or any miRNA can be performed using any method known to those having ordinary knowledge in the technical field of the present invention or such as by real-time polymerase chain reaction (real-time PCR), northern blot method (Northern blot) analysis achieved by the methods described herein. Measuring the expression of the miRNA comprises measuring the expression of a mature form of the miRNA or a precursor form associated with the expression of the miRNA.

在一特定的實施例中,至少一種miRNA的表現量係使用北方墨點法分析量化。例如,可藉由在核酸萃取緩衝液的存在下均質化(homogenization),然後離心,以從細胞中純化出總細胞RNA。沉澱核酸,且DNA藉由以DNA分解酶(DNase)處理及沉澱來移除。然後,RNA分子根據標準技術藉由在瓊脂糖凝膠(agarose gels)上的膠體電泳(gel electrophoresis)分離並轉移至硝化纖維素濾紙。之後,RNA藉由加熱固定化(immobilized)於濾紙上。特定RNA的偵測及量化使用適合的經標定DNA或RNA探針互補至所討論的RNA而完成。參見,例如Molecular Cloning: A Laboratory Manual, J. Sambrook et al., eds., 2nd edition, Cold Spring Harbor Laboratory Press, 1989, Chapter 7,其揭露的全文與此併入作為參考。In a specific embodiment, the expression level of at least one miRNA is quantified using northern blot analysis. For example, total cellular RNA can be purified from cells by homogenization in the presence of nucleic acid extraction buffer followed by centrifugation. Nucleic acids are precipitated, and DNA is removed by treatment with DNase and precipitation. RNA molecules were then separated by gel electrophoresis on agarose gels and transferred to nitrocellulose filters according to standard techniques. Afterwards, the RNA was immobilized on filter paper by heating. Detection and quantification of a specific RNA is accomplished using appropriate labeled DNA or RNA probes complementary to the RNA in question. See, eg, Molecular Cloning: A Laboratory Manual, J. Sambrook et al., eds., 2nd edition, Cold Spring Harbor Laboratory Press, 1989, Chapter 7, the entire disclosure of which is hereby incorporated by reference.

在一些實施例中,微陣列(microarray)的使用為可行的。微陣列是核酸、蛋白質、小分子、細胞或可對複合生物樣本平行分析的其他物質的微觀、序化陣列。所述技術提供許多具有已知序列資訊的寡核苷酸(oligonucleotides)或多核苷酸(polynucleotides)作為探針,以找尋並與樣本中的互補股(complementary strands)雜交(hybridize),因此藉由選擇性結合捕獲互補股。探針包含對目標miRNA序列的至少一部分互補或實質上互補的寡核苷酸或多核苷酸序列。「互補(complementary)」指的是在兩個核酸股的區域之間序列互補的廣義概念。已知的是,若殘基為胸腺嘧碇(thymine)或脲嘧啶(uracil),則第一核酸區域的腺嘌呤殘基(adenine residue)可與反向平行於第一區域的第二核酸區域的殘基形成特定的氫鍵(「鹼基對(base pairing)」)。相似地,已知的是,若殘基為鳥嘌呤(guanine),則第一核酸區域的胞嘧啶殘基(cytosine residue)可與反向平行於第一股的第二核酸股的殘基鹼基配對。當如果兩個區域以反向平行形式(fashion)排列,第一區域的至少一核苷酸殘基可與第二區域的殘基鹼基配對時,核酸的第一區域互補於相同或不同核酸的第二區域。較佳地,第一區域包含第一部份且第二區域包含第二部分,因此當第一部份及第二部分以反向平行形式排列,第一部分的核苷酸殘基的至少大約50%及較佳為至少大約75%、至少大約90%或至少大約95%可與第二部分中的核苷酸殘基鹼基配對。更佳地,所有第一部份的核苷酸殘基可與第二部分中的核苷酸殘基鹼基配對。In some embodiments, the use of microarrays is feasible. Microarrays are microscopic, ordered arrays of nucleic acids, proteins, small molecules, cells, or other substances that can be analyzed in parallel on complex biological samples. The technology provides many oligonucleotides (oligonucleotides) or polynucleotides (polynucleotides) with known sequence information as probes to find and hybridize with complementary strands (complementary strands) in the sample, so by Selective binding captures complementary strands. Probes comprise oligonucleotide or polynucleotide sequences that are complementary or substantially complementary to at least a portion of a target miRNA sequence. "Complementary" refers to the broad concept of sequence complementarity between regions of two nucleic acid strands. It is known that if the residue is thymine or uracil, the adenine residue of the first nucleic acid region can be aligned with the second nucleic acid region antiparallel to the first region. residues form specific hydrogen bonds ("base pairing"). Similarly, it is known that if the residue is guanine, the cytosine residue of the first nucleic acid region can be compared with the residue base of the second nucleic acid strand antiparallel to the first strand. base pairing. A first region of nucleic acid is complementary to the same or different nucleic acid when at least one nucleotide residue of the first region can base pair with a residue of the second region if the two regions are arranged in antiparallel fashion of the second area. Preferably, the first region comprises a first portion and the second region comprises a second portion such that when the first portion and the second portion are arranged in an antiparallel fashion, at least about 50 of the nucleotide residues in the first portion % and preferably at least about 75%, at least about 90%, or at least about 95% can base pair with the nucleotide residues in the second portion. More preferably, all nucleotide residues of the first portion are base pairable with nucleotide residues in the second portion.

例如,miRNAs的微陣列分析可根據任何所屬技術領域習知方法完成。在一個實施例中,RNA從樣本的細胞進行萃取,使用變性聚丙烯醯胺凝膠電泳(polyacrylamide gel electrophoresis)從所有RNA中尺寸選擇(size-selected)小的RNA(18~26個核苷酸)。寡核苷酸連接子附著於小的RNA的5’及3’端,且產生的接合產物作為用於10個放大(amplification)循環的RT-PCR反應之模板。有義股(sense strand)PCR引子具有附著其之5’端的螢光團,因而螢光標記PCR產物的有義股。所述PCR產物變性,接著雜交至微陣列。PCR產物指的是作為與陣列上相應的miRNA捕獲探針序列互補的目標核酸,其將經由鹼基配對雜交至固定有捕獲探針的點。之後,當所述的點使用微陣列雷射掃瞄器激發時將發出螢光。然後,各點的螢光強度是使用數個陽性及陰性對照組及陣列數據標準化方法來評估特定miRNA的複製數量,其將產生特定miRNA的表現量之評估。關於本文所揭露的miRNA,探針可以與目標miRNA或多核苷酸序列100%互補。然而,由於探針可以特異性結合目標多核苷酸並從樣本捕獲目標多核苷酸,因而所述探針不需必須沿著目標多核苷酸的全長完全互補至目標多核苷酸。在一些實施例中,探針為與SEQ ID NO:1、SEQ ID NO:2或SEQ ID NO:3至少90%、至少95%或100%相同的多核苷酸互補。For example, microarray analysis of miRNAs can be accomplished according to any method known in the art. In one embodiment, RNA is extracted from the cells of the sample, and small RNAs (18-26 nucleotides in length) are size-selected from all RNAs using denaturing polyacrylamide gel electrophoresis. ). Oligonucleotide linkers were attached to the 5' and 3' ends of the small RNAs, and the resulting ligation products served as templates for RT-PCR reactions for 10 cycles of amplification. The sense strand PCR primer has a fluorophore attached to its 5' end, thus fluorescently labeling the sense strand of the PCR product. The PCR products are denatured and then hybridized to a microarray. The PCR product refers to the target nucleic acid that is complementary to the corresponding miRNA capture probe sequence on the array, which will hybridize via base pairing to the spot where the capture probe is immobilized. The spots will then fluoresce when excited using a microarray laser scanner. The fluorescence intensity of each spot is then assessed using several positive and negative control groups and array data normalization methods to assess the copy number of a particular miRNA, which will yield an estimate of the expression level of a particular miRNA. With respect to the miRNAs disclosed herein, the probes may be 100% complementary to the target miRNA or polynucleotide sequence. However, since the probe can specifically bind and capture the target polynucleotide from the sample, the probe need not necessarily be fully complementary to the target polynucleotide along its entire length. In some embodiments, the probe is complementary to a polynucleotide that is at least 90%, at least 95%, or 100% identical to SEQ ID NO: 1 , SEQ ID NO: 2, or SEQ ID NO: 3.

在一些實施例中,定量反轉錄聚合酶鏈鎖反應(quantitative RT-PCR)的使用為可行的。定量反轉錄聚合酶鏈鎖反應(qRT-PCR)為用來快速測定聚合酶鏈鎖反應的產物量之聚合酶鏈鎖的修改。qRT-PCR的目的通常為用於測定如miRNA的基因序列是否存在於樣本中,以及若其存在時,則在所述樣本中的複製量為何。可測定包含miRNA的核酸分子之表現的PCR之任何方法落在本揭露的範圍中。在所屬技術領域中已知的qRT-PCR方法的數種變化包含但不限制於經由瓊酯醣膠體電泳分析(agarose gel electrophoresis)、SYBR Green的使用(雙股DNA染劑)以及螢光報導探針(fluorescent reporter probe)的使用。In some embodiments, the use of quantitative RT-PCR is available. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) is a modification of polymerase chain reaction used to rapidly determine the amount of product of the polymerase chain reaction. The purpose of qRT-PCR is generally to determine whether a gene sequence such as a miRNA is present in a sample, and if so, how much is replicated in the sample. Any method of PCR that can measure the expression of nucleic acid molecules comprising miRNAs is within the scope of the present disclosure. Several variations of the qRT-PCR method known in the art include, but are not limited to, analysis via agarose gel electrophoresis, use of SYBR Green (double-stranded DNA stain), and fluorescent reporter detection. Use of fluorescent reporter probes.

在一個實施例中,本發明提供用於在受試者中檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險之方法,其包含:(a)自疑似患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎之個體取得測試樣本,體外測定所述測試樣本中的至少一miRNA的表達水平,所述至少一miRNA係選自由miRNA-140-5p、miRNA-192-5p及其所組成的群組;以及(b)若所述測試樣本中的所述至少一miRNA的表達水平相對於無合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎測試樣本中對應的miRNA的表達水平較高時,則識別所述個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險。In one embodiment, the present invention provides a method for detecting seronegative arthritis with psoriatic arthritis and ankylosing spondylitis or predicting seronegative arthritis with psoriatic arthritis and ankylosing spondylitis in a subject A method for risk of arthritis, comprising: (a) obtaining a test sample from an individual suspected of having seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, and measuring at least one miRNA in the test sample in vitro The expression level of said at least one miRNA is selected from the group consisting of miRNA-140-5p, miRNA-192-5p, and (b) if the expression level of said at least one miRNA in said test sample The individual is identified as having combined psoriatic arthritis and ankylosing spondylitis when the expression level of the corresponding miRNA is higher in the seronegative arthritis test sample relative to the absence of combined psoriatic arthritis and ankylosing spondylitis seronegative arthritis or at risk for seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis.

在另一實施例中,本發明提供用於在受試者中檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險之方法,其方法同上所述,但體外測定的至少一miRNA係選自由miRNA-140-5p、miRNA-192-5p、miRNA-146a-5p及其所組成的群組。In another embodiment, the present invention provides a serum for detecting seronegative arthritis combined psoriatic arthritis and ankylosing spondylitis or predicting suffering from combined psoriatic arthritis and ankylosing spondylitis in a subject The method for negative arthritis risk, the method is the same as above, but at least one miRNA determined in vitro is selected from the group consisting of miRNA-140-5p, miRNA-192-5p, miRNA-146a-5p and the group thereof.

在又一實施例中,本發明提供用於在受試者中檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險之方法,其中所述合併乾癬性關節炎和僵直性之脊椎炎係為非放射影像確認之中軸性脊椎關節炎(non-radiography axial spondyarthropathy, nr-axSpA)。In yet another embodiment, the present invention provides a serum for detecting seronegative arthritis combined psoriatic arthritis and ankylosing spondylitis or predicting suffering from combined psoriatic arthritis and ankylosing spondylitis in a subject A method for negative arthritis risk, wherein the combination of psoriatic arthritis and ankylosing spondylitis is non-radiography axial spondyarthropathy (nr-axSpA).

實例1Example 1

研究招募了30位受試者作為確認組,其中包含20位具有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎(SPA_DSA)之受試者,以及10位不具合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎(SPA_DSN)之健康受試者作為對照組;進行文獻回顧並選定感興趣的各種RNA靶標以在所述確認組中進行測試。其中,對每位受試者檢測選定的miRNA靶標,以確定可以區分SPA_DSA受試者和SPA_DSN受試者的任何特定靶標miRNA。The study recruited 30 subjects as the confirmation group, including 20 subjects with seronegative arthritis (SPA_DSA) combined with psoriatic arthritis and ankylosing spondylitis (SPA_DSA), and 10 subjects without combined psoriatic arthritis Healthy subjects with seronegative arthritis (SPA_DSN) and ankylosing spondylitis (SPA_DSN) served as controls; a literature review was performed and various RNA targets of interest were selected to be tested in the validation set. Here, selected miRNA targets were tested for each subject to identify any specific target miRNAs that could differentiate SPA_DSA subjects from SPA_DSN subjects.

臨床評估clinical assessment

30位受試者在招募時收集補體水平和抗雙股DNA水平,且接著定期收集。此外,為了進一步分析,亦收集了各種臨床生物標誌、例如人口數據、生化數據、白血球含量、和紅血球沉降速率等數據。參照第1圖,第1圖係為具有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎受試者以及不具具有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎受試者之各種生理數據分析示意圖;第1圖中SPA_DSA受試組(20位)和SPA_DSN受試組(10位)的各種臨床生物標誌比較,係使用SPSS第22版藉由曼惠特尼U檢定(Mann-Whitney U test)完成,其所得P值設定為閾值低於0.05時,被視為具有顯著差異。Complement levels and anti-double-stranded DNA levels were collected for 30 subjects at recruitment and periodically thereafter. In addition, various clinical biomarkers, such as demographic data, biochemical data, leukocyte count, and erythrocyte sedimentation rate, were also collected for further analysis. Referring to Figure 1, Figure 1 is a seronegative arthritis subject with combined psoriatic arthritis and ankylosing spondylitis and a seronegative arthritis subject without combined psoriatic arthritis and ankylosing spondylitis Schematic diagram of the analysis of various physiological data of the subjects; in the first figure, the comparison of various clinical biomarkers between the SPA_DSA test group (20 persons) and the SPA_DSN test group (10 persons) was performed using SPSS version 22 by Mann Whitney U The test (Mann-Whitney U test) was completed, and the obtained P value was set as a threshold value below 0.05, which was considered to have a significant difference.

樣本收集sample collection

利用2,500rpm(150×g)離心20分鐘以將全血分離成血漿和血球細胞(即白細胞和紅血球)。藉由4.5%葡聚醣(dextran)沉降以1:5的比例將白血球與紅血球分離,以將白血球自紅血球細胞(RBC)分離。接著,使用Ficoll-Paque(Amersham Pharmacia Biotech)的密度梯度離心以2:1的比例在1500rpm離心30分鐘,以將白血球分離成多形核細胞(olymorphonuclear cell, PMN)和單核細胞(MNC)。進一步地,使用Direct-zol TMRNA MiniPrep套組(ZYMO RESEARCH)處理收集的單核細胞,以萃取總RNA,接著進行次世代定序法(Next-generation sequencing, NGS)及/或qPCR分析。 Whole blood was separated into plasma and hemocytes (ie white blood cells and red blood cells) by centrifugation at 2,500 rpm (150 xg) for 20 minutes. Leukocytes were separated from red blood cells (RBC) by sedimentation with 4.5% dextran at a ratio of 1:5. Next, leukocytes were separated into polymorphonuclear cells (olymorphonuclear cells, PMNs) and mononuclear cells (MNCs) by density gradient centrifugation using Ficoll-Paque (Amersham Pharmacia Biotech) at a ratio of 2:1 at 1500 rpm for 30 minutes. Further, the collected mononuclear cells were treated with Direct-zol TM RNA MiniPrep kit (ZYMO RESEARCH) to extract total RNA, followed by next-generation sequencing (NGS) and/or qPCR analysis.

確認選定的微小RNA水平Confirmation of selected microRNA levels

即時qPCR驗證微小RNA表達豐度(abundances)Real-time qPCR verification of microRNA expression abundance (abundances)

使用TaqMan TM微小RNA逆轉錄套組(Applied Biosystems)來製備cDNA。每個反應需要來自外周血球單核細胞(PBMC)的總RNA 20ng。按照製造商的說明,使用Veriti 96孔熱循環儀(Applied Biosystems)進行逆轉錄反應。接著,使用逆轉錄產物進行qPCR反應,並使用7500即時PCR系統(Applied Biosystems)和不含UNG的TaqMan Universal PCR Master Mix II(Applied Biosystems)進行定量RT-PCR。即時PCR循環條件為95℃10分鐘,接著以95℃15秒進行40個循環,最後為60℃1分鐘。使用ΔCt (cycle threshold)值確定微小RNA表達豐度。 cDNA was prepared using TaqMan MicroRNA Reverse Transcription Kit (Applied Biosystems). Each reaction requires 20 ng of total RNA from peripheral blood mononuclear cells (PBMC). Reverse transcription reactions were performed using a Veriti 96-well thermal cycler (Applied Biosystems) following the manufacturer's instructions. Next, qPCR reactions were performed using the reverse transcription products, and quantitative RT-PCR was performed using the 7500 Real-Time PCR System (Applied Biosystems) and TaqMan Universal PCR Master Mix II (Applied Biosystems) without UNG. The real-time PCR cycle conditions were 95° C. for 10 minutes, followed by 40 cycles of 95° C. for 15 seconds, and finally 60° C. for 1 minute. MicroRNA expression abundance was determined using the ΔCt (cycle threshold) value.

統計分析Statistical Analysis

本研究中的所有數據以平均±標準誤差(SD)或中位數(四分位數範圍)表示。必要時,使用卡方檢驗(Chi-square test)或費雪精確性檢定(Fisher's exact test)比較分類變量。使用Student’s t-test比較兩組之間的連續變量。若 p≤0.05,則變量被認為具有統計學意義。所有統計分析計算利用SAS套裝軟體,9.1版本(2002, SAS Statistical Institute, North Carolina)進行。 All data in this study are presented as mean ± standard error (SD) or median (interquartile range). Categorical variables were compared using Chi-square test or Fisher's exact test when necessary. Continuous variables were compared between two groups using Student's t-test. Variables were considered statistically significant if p ≤ 0.05. All statistical analysis calculations were performed using the SAS package software, version 9.1 (2002, SAS Statistical Institute, North Carolina).

以NGS剖析miRNAmiRNA Profiling by NGS

將收集自6位SPA_DSA個體和6位SPA_DSN個體(性別及年齡匹配)的MNC的RNA樣本平均地合併3位SPA_DSA與3位SPA_DSN,以產生兩個SPA_DSA與SPA_DSN合併的RNA基因庫;其後,尋找20位SPA_DSA個體和10位SPA_DSN個體進行驗證(參考第1圖)。我們按照TruSeq®小RNA(Illumina)樣本製備方案製備了合併的基因庫,並使用Illumina MiSeq平台進行定序。如Kuo HC, Hsieh KS, Ming-Huey Guo M, Weng KP, Ger LP, Chan WC, Li SC. Next-generation sequencing identifies micro-RNA-based biomarker panel for Kawasaki disease. J Allergy Clin Immunol. 2016; 138: 1227-30. doi: 10.1016/j.jaci.2016.04.050所述,使用miRSeq分析分析生成的原始數據,評估整體定序質量並確定微小RNA表達譜。我們將SPA_DSA組與SPA_DSN對照組之間的商數(quotient)維持在0.8至1.2,其確定了3個標靶miRNA,亦即miRNA-140-5p、miRNA-192-5p、miRNA-146a-5p,此三者miRNA皆在SPA_DSA組與SPA_DSN對照組之間有顯著差異(參照第1圖,皆為p ≤ 0.05)The RNA samples collected from the MNCs of 6 SPA_DSA individuals and 6 SPA_DSN individuals (sex and age matched) were averagely combined with 3 SPA_DSAs and 3 SPA_DSNs to generate two SPA_DSA and SPA_DSN combined RNA gene pools; thereafter, Find 20 SPA_DSA individuals and 10 SPA_DSN individuals for verification (refer to Figure 1). We prepared pooled gene libraries following the TruSeq® Small RNA (Illumina) sample preparation protocol and sequenced using the Illumina MiSeq platform. Such as Kuo HC, Hsieh KS, Ming-Huey Guo M, Weng KP, Ger LP, Chan WC, Li SC. Next-generation sequencing identifies micro-RNA-based biomarker panel for Kawasaki disease. J Allergy Clin Immunol. 2016; 138: 1227-30. doi: 10.1016/j.jaci.2016.04.050, the generated raw data were analyzed using miRSeq analysis to assess overall sequencing quality and determine microRNA expression profiles. We maintained the quotient between the SPA_DSA group and the SPA_DSN control group at 0.8 to 1.2, which identified 3 target miRNAs, namely miRNA-140-5p, miRNA-192-5p, miRNA-146a-5p , these three miRNAs were significantly different between the SPA_DSA group and the SPA_DSN control group (refer to Figure 1, all p ≤ 0.05)

實例2Example 2

接收者操作特徵曲線分析receiver operating characteristic curve analysis

接收者操作特徵曲線(receiver operating characteristic curve, ROC curve),其係以圖像的方式呈現二分類系統(binary classifier system)在特定的分類或閾值(discrimination threshold)下的表現。圖形的縱軸(y-axis)為真陽性率(true positive rate; TPR),又稱為靈敏度(sensitivity);橫軸(x-axis)為偽陽性率(false-posiitive rate; FPR),以1-特異度(1-specificity)表示,而靈敏度為將結果正確判斷為陽性的機率,特異度係將結果正確判斷為負向或陰性的機率。當指定一個分界點(cut-point)來區分檢驗的陽性與陰性時,這個分界點會影響到診斷工具的靈敏度(sensitivity)及特異度(specificity)。在醫學上,靈敏度表示有病者被判為陽性的機率,而特異度表示無病者被判為陰性的機率。Receiver operating characteristic curve (ROC curve), which graphically presents the performance of a binary classifier system under a specific classification or threshold (discrimination threshold). The vertical axis (y-axis) of the graph is the true positive rate (true positive rate; TPR), also known as sensitivity (sensitivity); the horizontal axis (x-axis) is the false positive rate (false-positive rate; FPR), with 1-specificity (1-specificity) indicates that the sensitivity is the probability of correctly judging the result as positive, and the specificity is the probability of correctly judging the result as negative or negative. When specifying a cut-point (cut-point) to distinguish between positive and negative tests, this cut-point will affect the sensitivity (sensitivity) and specificity (specificity) of the diagnostic tool. In medicine, sensitivity indicates the probability that a patient with the disease is judged positive, while specificity indicates the probability that an undiagnosed person is judged negative.

由實例1中可得知,miRNA-140-5p、miRNA-192-5p、miRNA-146a-5p等三者miRNA在SPA_DSA組與SPA_DSN對照組之間有顯著差異,因此對此三者miRNA進行ROC曲線分析。參照第2圖,第2圖係為miRNA-140-5p、miRNA-192-5p以及miR-146a-5p之ROC曲線示意圖,由第2圖中可看出,曲面下面積(area under curve, AUC)可分別達到0.85、0.69及0.74,AUC值越大,代表其檢測之準確度越高。It can be seen from Example 1 that miRNA-140-5p, miRNA-192-5p, miRNA-146a-5p and other three miRNAs have significant differences between the SPA_DSA group and the SPA_DSN control group, so ROC is performed on the three miRNAs Curve analysis. Referring to Figure 2, Figure 2 is a schematic diagram of the ROC curves of miRNA-140-5p, miRNA-192-5p, and miR-146a-5p. It can be seen from Figure 2 that the area under curve (AUC ) can reach 0.85, 0.69 and 0.74 respectively, and the larger the AUC value, the higher the detection accuracy.

此外,miRNA-140-5p、miRNA-192-5p、miRNA-146a-5p之靈敏度依序為93.8%、87.5%、62.5%,而異度則皆為70%;雖然miRNA-140-5p、miRNA-192-5p兩者miRNA即可達到85%以上的靈敏度及70%之特異度,亦即可識別該個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險;同時檢測三者miRNA來識別該個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險的positive predictive value為86%,negative predictive value為50-70%。In addition, the sensitivities of miRNA-140-5p, miRNA-192-5p, and miRNA-146a-5p were 93.8%, 87.5%, and 62.5% in sequence, while the differences were all 70%; although miRNA-140-5p, miRNA Both miRNAs of -192-5p can achieve a sensitivity of more than 85% and a specificity of 70%, that is, it can be identified that the individual suffers from seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis or has a combined Risk of seronegative arthritis of psoriatic arthritis and ankylosing spondylitis; simultaneous detection of three miRNAs to identify individuals with seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis or with combined psoriasis The positive predictive value of the risk of seronegative arthritis for acute arthritis and ankylosing spondylitis was 86%, and the negative predictive value was 50-70%.

實例3Example 3

非放射影像確認之中軸性脊椎關節炎分析Analysis of nonradiographically confirmed axial spondyloarthritis

非放射影像確認之中軸性脊椎關節炎(non-radiography axial spondyarthropathy, nr-axSpA),其係為一種炎症性關節炎,可引起脊椎炎症和其他症狀,在X光影像上沒有看到明顯的損傷,因此被稱為非放射影像確認之中軸性脊椎關節炎;但因為無法由X光影像中判別,可藉由以下病徵進行判斷是否可能為中軸性脊椎關節炎:發炎性背痛、後腳跟痛、指關節炎、發炎性腸炎所引起的發炎性背痛、牛皮癬等。Non-radiography axial spondyarthropathy (nr-axSpA), which is an inflammatory arthritis that causes inflammation and other symptoms of the spine for which no significant damage is seen on radiographs , so it is called non-radiographically confirmed axial spondyloarthritis; but because it cannot be distinguished from X-ray images, it can be judged whether it may be axial spondyloarthritis by the following symptoms: inflammatory back pain, heel pain , Inflammatory back pain caused by arthritis, inflammatory bowel disease, psoriasis, etc.

針對在發炎性腸炎(inflammatory bowel disease, IBD)所引起的發炎性背痛患者進行檢測,藉由單因子多樣本中位數差異檢定(Kruskal-Wallis test)是否miRNA-140-5p、miRNA-192-5p、miRNA-146a-5p等三者miRNA也出現於發炎性腸炎所引起的發炎性背痛患者上;Kruskal-Wallis test係當資料中包含多組樣本(三組以上樣本),且想了解多組樣本間母體中位數是否有差異時,則可使用此方法。For the detection of patients with inflammatory back pain caused by inflammatory bowel disease (inflammatory bowel disease, IBD), whether miRNA-140-5p, miRNA-192 -5p, miRNA-146a-5p and other three miRNAs also appear in patients with inflammatory back pain caused by inflammatory bowel disease; This method can be used when there is a difference in the maternal median between multiple groups of samples.

參照第3圖至第5圖,其依序為miRNA-140-5p、miRNA-192-5p以及miRNA-146a-5p之單因子多樣本中位數差異檢定示意圖,由第3圖至第5圖中可看出,在發炎性腸炎(IBD)所引起的相關性背痛患者中,與乾癬性關節炎(PSA)以及僵直性脊椎炎(AS)一樣地可測出上述三者miRNA。由此可見,miRNA-140-5p、miRNA-192-5p以及miRNA-146a-5p等三者miRNA的確具有檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎,或預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險的潛力。Refer to Figure 3 to Figure 5, which are the schematic diagrams of the single-factor multi-sample median difference test of miRNA-140-5p, miRNA-192-5p and miRNA-146a-5p in sequence, from Figure 3 to Figure 5 It can be seen that in patients with back pain associated with inflammatory bowel disease (IBD), the above three miRNAs can be detected as in psoriatic arthritis (PSA) and ankylosing spondylitis (AS). It can be seen that miRNA-140-5p, miRNA-192-5p and miRNA-146a-5p do have the ability to detect seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, or to predict the combination of psoriasis Potential for the risk of seronegative arthritis in osteoarthritis and ankylosing spondylitis.

上述實施例僅例示性說明本發明之原理及功效,而非用於限制本發明。任何熟習此項技術之人士均可在不違背本發明之精神及範疇下,對上述實施例進行修飾與改變。因此,本發明之權利保護範圍,應如本發明申請專利範圍所列。The above-mentioned embodiments are only illustrative to illustrate the principles and functions of the present invention, and are not intended to limit the present invention. Anyone skilled in the art can make modifications and changes to the above-mentioned embodiments without departing from the spirit and scope of the present invention. Therefore, the scope of protection of the rights of the present invention should be listed in the patent scope of the present invention.

none

以下搭配圖式,對於本發明進行進一步說明:The following collocation drawings further illustrate the present invention:

第1圖係為具有關節炎性脊椎關節炎疾病譜受試者以及不具關節炎性脊椎關節炎疾病譜受試者之各種生理數據分析示意圖; 第2圖係為miRNA-140-5p、miRNA-192-5p以及miR-146a-5p之ROC曲線示意圖; 第3圖係為miRNA-140-5p之單因子多樣本中位數差異檢定示意圖; 第4圖係為miRNA-192-5p之單因子多樣本中位數差異檢定示意圖; 第5圖係為miR-146a-5p之單因子多樣本中位數差異檢定示意圖。 Figure 1 is a schematic diagram of analyzing various physiological data of subjects with arthritic spondyloarthritis disease spectrum and subjects without arthritic spondyloarthritis disease spectrum; Figure 2 is a schematic diagram of the ROC curves of miRNA-140-5p, miRNA-192-5p and miR-146a-5p; Figure 3 is a schematic diagram of the single-factor multi-sample median difference test for miRNA-140-5p; Figure 4 is a schematic diagram of the single-factor multi-sample median difference test for miRNA-192-5p; Figure 5 is a schematic diagram of the single-factor multi-sample median difference test for miR-146a-5p.

Figure 12_A0101_SEQ_0001
Figure 12_A0101_SEQ_0001

Figure 12_A0101_SEQ_0002
Figure 12_A0101_SEQ_0002

Claims (10)

一種用於檢測合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或預測罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險之方法,其包含以下步驟: (a)自疑似患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎之一個體取得一測試樣本,體外測定該測試樣本中的至少一miRNA的表達水平,該至少一miRNA係選自由miRNA-140-5p、miRNA-192-5p及所組成的群組;以及 (b)若該測試樣本中的該至少一miRNA的表達水平相對於一無合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎測試樣本中對應的miRNA的表達水平較高時,則識別該個體患有合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎或具有罹患合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎的風險。 A method for detecting seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis or predicting the risk of suffering from seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, comprising the following steps: (a) Obtain a test sample from an individual suspected of having seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis, and determine the expression level of at least one miRNA in the test sample in vitro, the at least one miRNA is selected from the group consisting of miRNA-140-5p, miRNA-192-5p, and (b) if the expression level of the at least one miRNA in the test sample is higher than the expression level of the corresponding miRNA in a seronegative arthritis test sample without combined psoriatic arthritis and ankylosing spondylitis, then The individual is identified as having or at risk of developing seronegative arthritis combining psoriatic arthritis and ankylosing spondylitis. 如請求項1所述之方法,其中該步驟(a)進一步包含體外測定miRNA-146a-5p的表達水平。The method according to claim 1, wherein the step (a) further comprises measuring the expression level of miRNA-146a-5p in vitro. 如請求項1所述之方法,其中該合併乾癬性關節炎和僵直性之脊椎炎之血清陰性關節炎係為非放射影像確認之中軸性脊椎關節炎。The method according to claim 1, wherein the seronegative arthritis combined with psoriatic arthritis and ankylosing spondylitis is nonradiographically confirmed axial spondyloarthritis. 如請求項1所述之方法,其中該至少一miRNA的表達水平係藉由即時PCR進行測定。The method according to claim 1, wherein the expression level of the at least one miRNA is determined by real-time PCR. 如請求項1所述之方法,其中該測試樣本係選自由生物檢體、血液、血漿、血清、淋巴液、骨髓、唾液及其組合所組成之群組。The method according to claim 1, wherein the test sample is selected from the group consisting of biological specimen, blood, plasma, serum, lymph, bone marrow, saliva and combinations thereof. 一種用於檢測發炎性腸炎引起的相關性背痛或預測罹患發炎性腸炎引起的相關性背痛的風險之方法,其包含以下步驟: (a)自疑似患有發炎性腸炎引起的相關性背痛之一個體取得一測試樣本,體外測定該測試樣本中的至少一miRNA的表達水平,該至少一miRNA係選自由miRNA-140-5p、miRNA-192-5p及其所組成的群組;以及 (b)若該測試樣本中的該至少一miRNA的表達水平相對於一無測試樣本中對應的miRNA的表達水平較高時,則識別該個體患有發炎性腸炎引起的相關性背痛或具有發炎性腸炎引起的相關性背痛的風險。 A method for detecting back pain associated with inflammatory bowel disease or predicting the risk of suffering from back pain associated with inflammatory bowel disease, comprising the following steps: (a) Obtain a test sample from one of the individuals suspected of having back pain associated with inflammatory bowel disease, and measure the expression level of at least one miRNA in the test sample in vitro, the at least one miRNA is selected from miRNA-140-5p , miRNA-192-5p, and groups thereof; and (b) identifying that the individual has back pain associated with inflammatory bowel disease or has Risk of back pain associated with inflammatory bowel disease. 如請求項6所述之方法,其中該步驟(a)進一步包含體外測定miRNA-146a-5p的表達水平。The method according to claim 6, wherein the step (a) further comprises measuring the expression level of miRNA-146a-5p in vitro. 如請求項6所述之方法,其中該發炎性腸炎引起的相關性背痛係為非放射影像確認之中軸性脊椎關節炎。The method according to claim 6, wherein the associated back pain caused by the inflammatory bowel disease is non-radiographically confirmed axial spondyloarthritis. 如請求項6所述之方法,其中該至少一miRNA的表達水平係藉由即時PCR進行測定。The method according to claim 6, wherein the expression level of the at least one miRNA is determined by real-time PCR. 如請求項6所述之方法,其中該測試樣本係選自由生物檢體、血液、血漿、血清、淋巴液、骨髓、唾液及其組合所組成之群組。The method according to claim 6, wherein the test sample is selected from the group consisting of biological specimen, blood, plasma, serum, lymph, bone marrow, saliva and combinations thereof.
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