TW202229548A - Tetrameric alpha/beta hydrolase variants with increased temperature stability and methods of using and producing thereof - Google Patents
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Abstract
Description
本發明涉及與SEQ ID NO: 1的親代α/β水解酶相比性能得到改進的α/β水解酶變體,例如具有提高的溫度穩定性,本發明還涉及編碼該變體的多核苷酸、使用和生產該變體的方法,包括指導由同源二聚體到同源四聚體的四級結構形成的方法。尤其,本發明涉及使用該變體降解玉米赤黴烯酮(ZEN)的方法。The present invention relates to alpha/beta hydrolase variants with improved properties compared to the parental alpha/beta hydrolase of SEQ ID NO: 1, for example having improved temperature stability, and to polynucleosides encoding the variants Acids, methods of using and producing the variants, including methods for directing the formation of quaternary structures from homodimers to homotetramers. In particular, the present invention relates to methods of degrading zearalenone (ZEN) using this variant.
真菌毒素是絲狀真菌產生的次級代謝產物。真菌毒素的一種重要的代表物是玉米赤黴烯酮(ZEN),其以前被稱為F-2毒素,由多種鐮刀菌產生,在世界各地都能找到。這些真菌感染栽培植物,尤其是諸如各種穀物,其中,真菌感染通常發生於收穫之前,那時真菌生長和/或真菌毒素的產生可在存儲之前發生,或者,真菌感染甚至可以發生於收穫之後,在存儲之前或在不恰當的存儲條件下。聯合國糧農組織(FAO)已估計,全世界25%的農產品受真菌污染,造成嚴重經濟損失。在一項歷時8年的國際研究中,從2004年1月到2011年12月對總計19757份樣本進行了分析;它們中的72%對至少一種真菌檢測為陽性,39%被發現受到污染,37%對ZEN檢測為陽性(Schatzmayr和Streit (2013) ‘Global occurrence of mycotoxins in the food and feed chain: Facts and figures.’ World Mycotoxin Journal 6(3):213-222)。在世界所有地區和檢測的全部類型的穀物和飼料作物諸如玉米、大豆粉、小麥、麥麩、DDGS(幹酒糟及可溶物)中以及在成品動物飼料混合物中都已經發現了ZEN,發生率達到100%。Mycotoxins are secondary metabolites produced by filamentous fungi. An important representative of mycotoxins is zearalenone (ZEN), formerly known as F-2 toxin, produced by a variety of Fusarium species and found throughout the world. These fungi infect cultivated plants, especially such as various grains, where fungal infection usually occurs before harvest, when fungal growth and/or mycotoxin production can occur before storage, or fungal infection can even occur after harvest, Before storage or under inappropriate storage conditions. The United Nations Food and Agriculture Organization (FAO) has estimated that 25% of the world's agricultural products are contaminated with fungi, causing serious economic losses. In an 8-year international study, a total of 19,757 samples were analyzed from January 2004 to December 2011; 72% of them tested positive for at least one fungus, 39% were found to be contaminated, 37% tested positive for ZEN (Schatzmayr and Streit (2013) 'Global occurrence of mycotoxins in the food and feed chain: Facts and figures.' World Mycotoxin Journal 6(3):213-222). ZEN has been found in all regions of the world and in all types of cereal and feed crops tested such as corn, soybean meal, wheat, wheat bran, DDGS (distillers dried grains and solubles) and in finished animal feed mixtures, incidence to 100%.
ZEN結合至雌激素受體並且會造成激素紊亂,ZEN在口服之後會立即被吸收並被動物轉化為兩種立體異構代謝產物α-玉米赤黴烯醇(α-ZEL) 和/或 β-玉米赤黴烯醇(β-ZEL)。例如,α-ZEL,並且α-玉米赤黴醇(α-ZAL) 和/或玉米赤黴酮(ZAN),比ZEN具有更強的雌激素效應。雖然共軛ZEN衍生物的雌激素活性比ZEN本身低,但是ZEN在消化道中會從這些共軛ZEN衍生物再次釋放,從而恢復其完整的雌激素活性。ZEN binds to estrogen receptors and causes hormonal disturbance, ZEN is absorbed immediately after oral administration and converted by animals to two stereoisomeric metabolites, alpha-zearalenol (alpha-ZEL) and/or beta- Zearalenol (β-ZEL). For example, [alpha]-ZEL, and [alpha]-zearatol ([alpha]-ZAL) and/or zearalenone (ZAN), have stronger estrogenic effects than ZEN. Although the estrogenic activity of conjugated ZEN derivatives is lower than that of ZEN itself, ZEN is re-released from these conjugated ZEN derivatives in the digestive tract, restoring its full estrogenic activity.
ZEN具有高達20000 mg/kg體重的經口LD50,亞急性和/或亞慢性毒性作用諸如致畸作用、致癌作用、雌激素效應和免疫抑制作用會在長時間接觸的動物或人中發生。被ZEN污染的飼料會在哺乳動物中引起發育障礙。豬,特別是小豬,對ZEN極其敏感。飼料中超過0.5 ppm的ZEN濃度會引起發育障礙,超過1.5 ppm的濃度會在豬中引起高雌激素。在牛中,濃度是12 ppm的ZEN會造成自然流產。ZEN has an oral LD50 of up to 20000 mg/kg body weight, and subacute and/or subchronic toxic effects such as teratogenicity, carcinogenicity, estrogenic effects and immunosuppressive effects can occur in animals or humans with prolonged exposure. Feed contaminated with ZEN can cause developmental disorders in mammals. Pigs, especially piglets, are extremely sensitive to ZEN. Concentrations of ZEN in the feed above 0.5 ppm can cause stunted growth, and concentrations above 1.5 ppm can cause high estrogen in pigs. In cattle, ZEN at 12 ppm caused spontaneous abortion.
由於ZEN通過粘膜(尤其是通過胃粘膜以及口腔粘膜)能被快速吸收,因此立即定量失活是必須的。口服施用之後30分鐘,能夠在血液中檢測到ZEN。由於ZEN的有害作用,歐盟給出了食品中ZEN的限制上限以及動物飼料產品中ZEN上限的推薦值(EC No. 1881/2006)。Due to the rapid absorption of ZEN through the mucosa (especially through the gastric mucosa and oral mucosa), immediate quantitative inactivation is necessary. ZEN can be detected in blood 30 minutes after oral administration. Due to the harmful effects of ZEN, the European Union has given a maximum limit of ZEN in food and a recommendation for an upper limit of ZEN in animal feed products (EC No. 1881/2006).
降低食物和動物飼料產品中ZEN的主要策略是例如通過保持“良好的農作實踐”來限制真菌生長。這包括保證種子不受昆蟲和真菌的侵害或及時從田地移除農業廢棄物在內的很多措施。此外,田地中的真菌生長能夠通過使用殺真菌劑來降低。在收穫之後,應當在殘餘濕度低於15%和低溫條件下儲存收穫的物料以便防治真菌生長。同樣地,應當在深加工之前去除真菌感染的物料。儘管有這麼多的預防措施,但是,在2004至2011年間,甚至在農業標準最高的地區諸如北美和中歐,仍然發現有高達37%的檢測玉米樣本被ZEN污染(Schatzmayr和Streit (2013))。The main strategy to reduce ZEN in food and animal feed products is to limit fungal growth, for example by maintaining "good agricultural practices". This includes many measures including keeping seeds free from insects and fungi or removing agricultural waste from fields in a timely manner. In addition, fungal growth in fields can be reduced by the use of fungicides. After harvesting, harvested material should be stored with residual humidity below 15% and low temperature to control fungal growth. Likewise, fungal-infected material should be removed prior to further processing. Despite all these precautions, between 2004 and 2011, even in regions with the highest agricultural standards such as North America and Central Europe, up to 37% of corn samples tested were found to be contaminated with ZEN (Schatzmayr and Streit (2013)).
另一種有關的黴菌毒素是赭麯黴毒素A(OTA;也可稱作N-{[(3R)-5-氯代-8-羥基-3-甲基-1-氧代-3,4-二氫-1H-2-苯並吡喃-7-基] 羰基}-L-苯丙氨酸,(−)-N-((5-氯代-8-羥基-3-甲基-1-氧代-7-異苯並二氫吡喃基) 羰基)-3-苯丙氨酸,(2S)-2-{[(3R)-5-氯代-8-羥基-3-甲基-1-氧代-3,4-二氫-1H-2-苯並吡喃-7-羰基]氨基}-3-苯丙酸,(R)-N-((5-氯代-3,4-二氫-8-羥基-3-甲基-1-氧代-1H-2-苯並吡喃-7-基)羰基)苯丙氨酸,N-(((3R)-5-氯代-8-羥基-3-甲基-1-氧代-7-異苯並二氫吡喃基)羰基)-3-苯基-L-丙氨酸,N-[(3R)-5-氯代-8-羥基-3-甲基-1-氧代-3,4-二氫-1H-2-苯並吡喃-7-羰基]-L-苯丙氨酸,N-{[(3R)-5-氯代-8-羥基-3-甲基-1-氧代-3,4-二氫-1H-異苯並吡喃-7-基] 羰基}-L-苯丙氨酸),CAS號是303-47-9,它由真菌大量產生並且是包括赭麯黴毒素B、赭麯黴毒素C等在內的赭麯黴毒素組中毒性最強的成員。尤其,由於其對人類和動物產生的嚴重不良影響,包括腎毒性、免疫毒性和致癌性(Carballo et al., 2019; Malier et al., 2016),OTA受到食品和飼料安全方面的密切關注。在這方面,國際癌症研究機構(IARC)已經將OTA歸類於2B組的可能的人類致癌物(IARC, 2012)。Another related mycotoxin is ochratoxin A (OTA; also known as N-{[(3R)-5-chloro-8-hydroxy-3-methyl-1-oxo-3,4-di Hydrogen-1H-2-benzopyran-7-yl]carbonyl}-L-phenylalanine, (−)-N-((5-chloro-8-hydroxy-3-methyl-1-oxo (2S)-2-{[(3R)-5-chloro-8-hydroxy-3-methyl-1 -Oxo-3,4-dihydro-1H-2-benzopyran-7-carbonyl]amino}-3-phenylpropionic acid, (R)-N-((5-chloro-3,4- Dihydro-8-hydroxy-3-methyl-1-oxo-1H-2-benzopyran-7-yl)carbonyl)phenylalanine, N-(((3R)-5-chloro- 8-Hydroxy-3-methyl-1-oxo-7-isochromanyl)carbonyl)-3-phenyl-L-alanine, N-[(3R)-5-chloro -8-Hydroxy-3-methyl-1-oxo-3,4-dihydro-1H-2-benzopyran-7-carbonyl]-L-phenylalanine, N-{[(3R) -5-Chloro-8-hydroxy-3-methyl-1-oxo-3,4-dihydro-1H-isobenzopyran-7-yl]carbonyl}-L-phenylalanine), The CAS number is 303-47-9, which is abundantly produced by fungi and is the most toxic member of the ochratoxin group including ochratoxin B, ochratoxin C, and others. In particular, OTA has received close attention in food and feed safety due to its severe adverse effects in humans and animals, including nephrotoxicity, immunotoxicity, and carcinogenicity (Carballo et al., 2019; Malier et al., 2016). In this regard, the International Agency for Research on Cancer (IARC) has classified OTA as a possible human carcinogen in Group 2B (IARC, 2012).
為了解決上述問題和缺陷,需要研發在較高溫度能夠除去ZEN毒性並且適合用作食物或飼料添加劑或者食物或飼料產品的α/β-水解酶變體。To address the above problems and deficiencies, there is a need to develop α/β-hydrolase variants that are capable of removing ZEN toxicity at higher temperatures and are suitable for use as food or feed additives or food or feed products.
鑒於上述現有技術,作出本發明。因此,本發明的目的是尤其可以表述為提供除去ZEN毒性的改進的方式和方法(例如,除其他外,提供還能夠除去其它有關的黴菌毒素的組合物)。The present invention has been made in view of the above-mentioned prior art. Accordingly, an object of the present invention is to provide, inter alia, an improved means and method of removing the toxicity of ZEN (eg, to provide, among other things, a composition capable of removing other related mycotoxins).
本申請在下文描述的基礎上通過提供變體、組合物和方法來滿足該需求,以申請專利範圍為特徵並通過所附實施例和附圖來描述。The present application satisfies this need by providing variations, compositions and methods based on the description below, characterized by the scope of the claims and described by the accompanying examples and figures.
本發明涉及親代α/β水解酶的變體,該變體包括在對應於如下位置的一個或多個位置處的置換:SEQ ID NO: 1(較佳使用SEQ ID NO: 1的編號)的167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59, 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293和304,其中所述變體具有α/β水解酶活性,並且,其中該變體是與SEQ ID NO: 1的多肽具有至少71%(較佳:至少72%,至少73%,至少74%,至少75%,至少76%,至少77%,至少78%,至少79%,至少80%,至少81%,至少82%,至少83%,至少84%,至少85%,至少86%,至少87%,至少88%,至少89%,至少90%,至少91%,至少92%,至少93%,至少94%,至少95%,至少95.5%,至少96%,至少96.5%,至少97%,至少97.5%,至少98%,至少98.5%,至少99%, 或至少99.5%)但小於100% 序列同一性的多肽,該變體具有與親代α/β水解酶相比得以提高的溫度穩定性。The present invention relates to variants of the parental alpha/beta hydrolase comprising substitutions at one or more positions corresponding to: SEQ ID NO: 1 (the numbering of SEQ ID NO: 1 is preferably used) 167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59, 63, 65, 69 , 126, 139, 225, 230, 245, 251, 281, 287, 289, 293 and 304, wherein the variant has alpha/beta hydrolase activity, and wherein the variant is with SEQ ID NO: 1 The polypeptide has at least 71% (preferably: at least 72%, at least 73%, at least 74%, at least 75%, at least 76%, at least 77%, at least 78%, at least 79%, at least 80%, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94% , at least 95%, at least 95.5%, at least 96%, at least 96.5%, at least 97%, at least 97.5%, at least 98%, at least 98.5%, at least 99%, or at least 99.5%) but less than 100% sequence identity A polypeptide, the variant has improved temperature stability compared to the parental alpha/beta hydrolase.
本發明還涉及降解玉米赤黴烯酮(zearalenone)和/或其衍生物的方法,包括:(a)提供如下物質的一種或多種:本發明的變體和/或親代α/β水解酶,較佳與SEQ ID NO: 1的多肽具有至少95%序列同一性的所述親代α/β水解酶;(b)使(a)的一種或多種多肽與玉米赤黴烯酮和/或其衍生物進行接觸(例如,形成酶-底物混合物)。The present invention also relates to a method for degrading zearalenone and/or derivatives thereof, comprising: (a) providing one or more of the following: a variant of the present invention and/or a parental alpha/beta hydrolase , preferably the parent alpha/beta hydrolase having at least 95% sequence identity with the polypeptide of SEQ ID NO: 1; (b) making one or more polypeptides of (a) with zearalenone and/or Derivatives thereof are contacted (eg, to form an enzyme-substrate mixture).
本申請通過提供下文描述的變體和組合物滿足了該需求,以申請專利範圍為特徵,並通過所附實施例和附圖加以說明。The present application satisfies this need by providing the variants and compositions described below, characterized by the scope of the claims, and illustrated by the accompanying examples and figures.
序列表概述Sequence Listing Overview
SEQ ID NO: 1是親代α/β水解酶胺基酸序列。SEQ ID NO: 1 is the amino acid sequence of the parental alpha/beta hydrolase.
SEQ ID NO: 2-35是變體α/β水解酶胺基酸序列。SEQ ID NOs: 2-35 are variant alpha/beta hydrolase amino acid sequences.
SEQ ID NO: 36是共同胺基酸基序1。SEQ ID NO: 36 is common amino acid motif 1.
SEQ ID NO: 37是共同胺基酸基序2。SEQ ID NO: 37 is common amino acid motif 2.
SEQ ID NO: 38是共同胺基酸基序3。SEQ ID NO: 38 is common amino acid motif 3.
SEQ ID NO: 39是共同胺基酸基序4。SEQ ID NO: 39 is common amino acid motif 4.
定義definition
如本文所述的“EC編號”(酶學委員會編號)可用於指根據2020年2月26日發佈的酶命名數據庫的酶活性(例如,可從https://enzyme.expasy.org/獲得)。EC編號指的是NC-IUBMB的酶命名法1992(學術出版社,聖地亞哥,加利福尼亞州),包括了分別發表於如下刊物的增刊1-5:Eur. J. Biochem. 1994, 223, 1-5; Eur. J. Biochem. 1995, 232, 1-6; Eur. J. Biochem. 1996, 237, 1-5; Eur. J. Biochem. 1997, 250, 1-6; and Eur. J. Biochem. 1999, 264, 610-650。An "EC number" (Enzyme Commission Number) as used herein may be used to refer to enzymatic activity according to the Enzyme Nomenclature Database published on 26 February 2020 (eg, available at https://enzyme.expasy.org/) . EC numbers refer to the NC-IUBMB Enzyme Nomenclature 1992 (Academic Press, San Diego, CA), including Supplements 1-5 published in Eur. J. Biochem. 1994, 223, 1-5, respectively ; Eur. J. Biochem. 1995, 232, 1-6; Eur. J. Biochem. 1996, 237, 1-5; Eur. J. Biochem. 1997, 250, 1-6; and Eur. J. Biochem. 1999, 264, 610-650.
如本文所述,可參考UniProtKB登記號(http://www.uniprot.org/,可獲得自2020年12月2日公佈的UniProtKB版2020_06)As described herein, reference is made to the UniProtKB accession number (http://www.uniprot.org/, available from UniProtKB version 2020_06 published on 2 December 2020)
術語“多肽”在本文中與術語“蛋白質”等同使用。蛋白質(包括其片段,較佳生物活性片段,和肽,通常小於30個胺基酸)包括通過共價肽鍵彼此連接的一個或多個胺基酸(結果是得到一連串的胺基酸)。如本文使用的術語“多肽”描述了一組分子,這組分子例如由超過30個胺基酸組成。多肽可以進一步形成多聚體,例如二聚體、三聚體和更高級的低聚物,即,由超過一個多肽分子組成。形成這樣的二聚體、三聚體等的多肽分子可以是相同的或不同的。因此,這樣的多聚體的相應高階結構被稱為同源二聚體或異源二聚體、同源三聚體或異源三聚體等。異源多聚體的一個例子是抗體分子,在其天然存在的形式中,它是由兩個相同的輕肽鏈和兩個相同的重肽鏈組成。術語“多肽”和“蛋白質”還指天然修飾的多肽/蛋白質,其中修飾是由例如翻譯後修飾(例如糖基化、乙醯化、磷酸化等)造成的。這樣的修飾在本領域中是已知的。The term "polypeptide" is used herein equivalently to the term "protein". Proteins (including fragments thereof, preferably biologically active fragments, and peptides, typically less than 30 amino acids) comprise one or more amino acids linked to each other by covalent peptide bonds (resulting in a chain of amino acids). The term "polypeptide" as used herein describes a group of molecules, eg consisting of more than 30 amino acids. Polypeptides can further form multimers, such as dimers, trimers and higher order oligomers, ie, consist of more than one polypeptide molecule. The polypeptide molecules forming such dimers, trimers, etc. may be the same or different. Accordingly, the corresponding higher order structures of such multimers are referred to as homodimers or heterodimers, homotrimers or heterotrimers, and the like. An example of a heteromultimer is an antibody molecule, which in its naturally occurring form consists of two identical light peptide chains and two identical heavy peptide chains. The terms "polypeptide" and "protein" also refer to naturally modified polypeptides/proteins, wherein the modification results from, for example, post-translational modifications (eg, glycosylation, acetylation, phosphorylation, etc.). Such modifications are known in the art.
序列同一 性:兩個胺基酸序列之間或兩個核苷酸序列之間的關聯性由參數“序列同一性”來描述。就本發明而言,使用Needleman-Wunsch算法(Needleman和Wunsch, 1970, J. Mol. Biol. 48: 443-453)來確定兩個胺基酸序列之間的序列同一性,在EMBOSS軟件包(EMBOSS: 歐洲分子生物學開放軟件包, Rice et al., 2000, Trends Genet. 16: 276-277)(較佳5.0.0或更高的版本)的Needle程序中實施Needleman-Wunsch算法。使用的參數可以是缺口開放罰分10、缺口延伸罰分0.5和EBLOSUM62(BLOSUM62的EMBOSS版本)取代矩陣。標記為“最長同一性”(“longest identity”)的Needle輸出(使用非-簡單(no-brief)選項得到)用作同一性百分比並按照如下公式計算: Sequence identity : The relatedness between two amino acid sequences or between two nucleotide sequences is described by the parameter "sequence identity". For the purposes of the present invention, the Needleman-Wunsch algorithm (Needleman and Wunsch, 1970, J. Mol. Biol. 48: 443-453) was used to determine the sequence identity between two amino acid sequences, described in the EMBOSS software package ( EMBOSS: European Open Package for Molecular Biology, Rice et al., 2000, Trends Genet. 16: 276-277) (preferably version 5.0.0 or higher) of the Needle program implementing the Needleman-Wunsch algorithm. The parameters used can be a gap opening penalty of 10, a gap extension penalty of 0.5, and an EBLOSUM62 (EMBOSS version of BLOSUM62) substitution matrix. The Needle output marked "longest identity" (obtained with the no-brief option) is used as percent identity and is calculated as follows:
(相同殘基×100)/(比對的長度 - 比對中缺口的總數)。(identical residues × 100)/(length of alignment - total number of gaps in alignment).
可選地,使用的參數可以是缺口開放罰分10、缺口延伸罰分0.5和EDNAFULL(NCBI NUC4.4的EMBOSS版本)取代矩陣。標記為“最長同一性”的Needle輸出(使用非-簡單選項得到)用作同一性百分比並按照如下公式計算:Optionally, the parameters used can be a gap opening penalty of 10, a gap extension penalty of 0.5 and an EDNAFULL (EMBOSS version of NCBI NUC4.4) substitution matrix. The Needle output marked "longest identity" (obtained with the non-simple option) is used as percent identity and calculated as follows:
(相同脫氧核糖核苷酸×100)/(比對的長度 - 比對中缺口的總數)。(identical deoxyribonucleotides × 100)/(length of alignment - total number of gaps in alignment).
表現:術語“表現”包括產生變體(多肽)涉及的任何步驟,包括但不限於,轉錄、轉錄後修飾、翻譯、翻譯後修飾和分泌。Expression: The term "expression" includes any step involved in producing a variant (polypeptide), including, but not limited to, transcription, post-transcriptional modification, translation, post-translational modification, and secretion.
表現載體:術語“表現載體”指的是線性或環狀DNA分子,其包括編碼變體(多肽)的多核苷酸並可操作地連接於提供其表現的調控序列。Expression vector: The term "expression vector" refers to a linear or circular DNA molecule that includes a polynucleotide encoding a variant (polypeptide) and is operably linked to regulatory sequences that provide its expression.
片段:術語“片段”指的是在成熟多肽的氨基和/或羧基端缺少一個或多個(例如,幾個)胺基酸的多肽;其中,片段仍具有本文描述的活性(例如α/β水解酶活性,例如具有將ZEN水解為HZEN的活性)。Fragment: The term "fragment" refers to a polypeptide that lacks one or more (eg, several) amino acids at the amino and/or carboxy terminus of a mature polypeptide; wherein the fragment still possesses the activities described herein (eg, alpha/beta Hydrolase activity, such as having the activity of hydrolyzing ZEN to HZEN).
如本文使用的術語“EC:3.1.1.-”意思是“玉米赤黴烯酮水解酶”(也被稱為“玉米赤黴烯酮內酯酶”),例如,能夠將ZEN水解為HZEN的酶。The term "EC:3.1.1.-" as used herein means "zearalenone hydrolase" (also known as "zearalenone lactonase"), eg, capable of hydrolyzing ZEN to HZEN enzyme.
宿主細胞:術語“宿主細胞”指的是具有包括本發明多核苷酸的核酸構建體或表現載體,對轉化、轉染、轉導等敏感的任何細胞類型。術語“宿主細胞”包含親代細胞的任何後代,該後代因為複製過程中發生的突變而與親代細胞不相同。Host cell: The term "host cell" refers to any cell type that has a nucleic acid construct or expression vector comprising a polynucleotide of the invention, which is susceptible to transformation, transfection, transduction, and the like. The term "host cell" includes any progeny of a parent cell that differs from the parent cell due to mutations that occur during replication.
核酸構建體:術語“核酸構建體”指的是單鏈或雙鏈的核酸分子,其與天然存在的基因分離,或者以自然界中不存在的方式或合成的方式將其修飾為含有核酸片段,其包括一個或多個調控序列。Nucleic acid construct: The term "nucleic acid construct" refers to a single- or double-stranded nucleic acid molecule that is either isolated from a naturally occurring gene or modified to contain a nucleic acid fragment in a manner not found in nature or synthetically, It includes one or more regulatory sequences.
可操作地連接:術語“可操作地連接”指的是如下構型:在該構型中,調控序列位於相對於多核苷酸編碼序列的合適位置,如此,調控序列指導編碼序列的表現。Operably linked: The term "operably linked" refers to a configuration in which the regulatory sequences are located at appropriate positions relative to the coding sequence of a polynucleotide, such that the regulatory sequences direct the performance of the coding sequence.
調控序列:如本文使用的術語“調控序列”(“control sequences”)指的是編碼本發明的變體(多核苷酸)的多核苷酸進行表現所必需的核酸序列。每個調控序列對於編碼變體的多核苷酸來說可以是天然的(即來自相同基因)或外源的(即來自不同基因),或者,彼此是天然的或外源的。這樣的調控序列,包括但不限於,前導序列、聚腺苷酸化序列、前肽序列、啟動子、信號肽序列和轉錄終止子。至少,調控序列包括啟動子以及轉錄和翻譯終止信號。為了引入促進調控序列與本發明多核苷酸編碼區域進行連接的特定限制性位點,向調控序列提供接頭(linker)。Control sequences: The term "control sequences" as used herein refers to nucleic acid sequences necessary for the performance of a polynucleotide encoding a variant (polynucleotide) of the invention. Each regulatory sequence may be native (ie, from the same gene) or foreign (ie, from a different gene) to the polynucleotide encoding the variant, or, native or exogenous to each other. Such regulatory sequences include, but are not limited to, leader sequences, polyadenylation sequences, propeptide sequences, promoters, signal peptide sequences, and transcription terminators. At a minimum, the regulatory sequences include a promoter and transcriptional and translational stop signals. To introduce specific restriction sites that facilitate ligation of the regulatory sequences to the coding regions of the polynucleotides of the invention, linkers are provided to the regulatory sequences.
如本文使用,術語“對應於”指的是序列特定胺基酸的測定方法,其中參考了特定胺基酸序列(例如US2020071638)。例如,就本發明而言,當參考特定胺基酸位置時,本領域技術人員能夠將另一胺基酸序列與所述參考的胺基酸序列進行比對,以便確定哪個特定胺基酸在所述另一胺基酸序列中是有意義的。另一α/β水解酶中對應胺基酸殘基的識別可以使用幾種計算機程序通過多個多肽序列的比對來確定,前述計算機程序包括但不限於MUSCLE(基於對數期望的多序列比較;3.5或更高版本;Edgar, 2004, Nucleic Acids Research 32: 1792-1797)、MAFFT(6.857或更高版本;Katoh and Kuma, 2002, Nucleic Acids Research 30: 3059-3066; Katoh et al., 2005, Nucleic Acids Research 33: 51 1-518; Katoh and Toh, 2007, Bioinformatics 23: 372-374; Katoh et al., 2009, Methods in Molecular Biology 537: 39-64; Katoh and Toh, 2010, Bioinformatics 26: 1899-1900)和使用ClustalW的EMBOSS EMMA(1.83或更高版本;Thompson et al., 1994, Nucleic Acids Research 22: 4673-4680),分別使用它們各自的罰分參數。As used herein, the term "corresponds to" refers to a method of determination of a sequence-specific amino acid in which a specific amino acid sequence is referenced (eg, US2020071638). For example, in the context of the present invention, when referring to a particular amino acid position, one skilled in the art can align another amino acid sequence with the referenced amino acid sequence in order to determine which particular amino acid is in of interest in the other amino acid sequence. The identification of corresponding amino acid residues in another alpha/beta hydrolase can be determined by alignment of multiple polypeptide sequences using several computer programs including, but not limited to, MUSCLE (multiple sequence comparison based on logarithmic expectations; 3.5 or higher; Edgar, 2004, Nucleic Acids Research 32: 1792-1797), MAFFT (6.857 or higher; Katoh and Kuma, 2002, Nucleic Acids Research 30: 3059-3066; Katoh et al., 2005, Nucleic Acids Research 33: 51 1-518; Katoh and Toh, 2007, Bioinformatics 23: 372-374; Katoh et al., 2009, Methods in Molecular Biology 537: 39-64; Katoh and Toh, 2010, Bioinformatics 26: 1899 -1900) and EMBOSS EMMA using ClustalW (version 1.83 or higher; Thompson et al., 1994, Nucleic Acids Research 22: 4673-4680), using their respective penalty parameters.
就本發明而言,SEQ ID NO: 1公開的成熟多肽用於確定另一α/β水解酶中對應胺基酸殘基。另一α/β水解酶的胺基酸序列與SEQ ID NO: 1公開的成熟多肽進行比對,基於比對,使用Needleman-Wunsch 算法(Needleman and Wunsch, 1970, J. Mol. Biol. 48: 443-453)來確定與SEQ ID NO: 1公開的成熟多肽中任何胺基酸殘基相對應的胺基酸位置編號,前述Needleman-Wunsch 算法使用EMBOSS軟件包(較佳5.0.0或更高版本)的Needle程序來實施(EMBOSS:歐洲分子生物學開放軟件包,Rice et al., 2000, Trends Genet. 16: 276-277)。使用的參數是缺口開放罰分10、缺口延伸罰分0.5和EBLOSUM62(BLOSUM62的EMBOSS版本)取代矩陣。For purposes of the present invention, the mature polypeptide disclosed in SEQ ID NO: 1 is used to determine the corresponding amino acid residues in another alpha/beta hydrolase. The amino acid sequence of another alpha/beta hydrolase was aligned with the mature polypeptide disclosed in SEQ ID NO: 1, based on the alignment, using the Needleman-Wunsch algorithm (Needleman and Wunsch, 1970, J. Mol. Biol. 48: 443-453) to determine the amino acid position number corresponding to any amino acid residue in the mature polypeptide disclosed in SEQ ID NO: 1, the aforementioned Needleman-Wunsch algorithm using the EMBOSS software package (preferably 5.0.0 or higher) version) of the Needle program (EMBOSS: European Open Package for Molecular Biology, Rice et al., 2000, Trends Genet. 16: 276-277). The parameters used were a gap opening penalty of 10, a gap extension penalty of 0.5, and the EBLOSUM62 (EMBOSS version of BLOSUM62) substitution matrix.
根據本發明使用的術語“位置”指的是本文描述的胺基酸序列中的胺基酸的位置。在本文中,術語“對應”可包括一個位置不僅取決於前面的核苷酸/胺基酸的編號。The term "position" as used in accordance with the present invention refers to the position of an amino acid in the amino acid sequence described herein. As used herein, the term "corresponding" may include a position not only dependent on the numbering of the preceding nucleotide/amino acid.
如本文使用,“沉默”突變的意思是核酸序列中堿基置換,其不改變核酸序列編碼的胺基酸序列。“保守或等效”置換(或突變)是指如下面表1中“典型置換”所列舉的置換。如本文使用的“高度保守”置換在下面表1中標題“較佳的置換”下顯示。As used herein, a "silent" mutation means a substitution of a base in a nucleic acid sequence that does not alter the amino acid sequence encoded by the nucleic acid sequence. "Conservative or equivalent" substitutions (or mutations) refer to substitutions as listed in "typical substitutions" in Table 1 below. "Highly conservative" substitutions as used herein are shown in Table 1 below under the heading "Preferred Substitutions".
表1. 胺基酸置換
變體:術語“變體”指的是具有本文描述的比活力(specific activity)的多肽,其在一個或多個(例如,幾個)位置包括改變,即置換、插入和/或缺失。置換的意思是佔據一個位置的胺基酸被不同的胺基酸所取代;缺失的意思是佔據一個位置的胺基酸被去掉;插入的意思是緊接著佔據一個位置的胺基酸再增加一個胺基酸。Variant: The term "variant" refers to a polypeptide having a specific activity as described herein that includes alterations, ie substitutions, insertions and/or deletions, at one or more (eg, several) positions. Substitution means that the amino acid occupying a position is replaced by a different amino acid; deletion means that the amino acid occupying a position is removed; insertion means that the amino acid occupying a position is followed by another amino acid. amino acid.
在描述本發明的變體中,為了便於參考而調整下述命名法。採用了公認的lUPAC單字母或三字母胺基酸縮寫。In describing variants of the invention, the following nomenclature has been adjusted for ease of reference. The accepted one-letter or three-letter amino acid abbreviations for lUPAC are used.
置換。對於胺基酸置換,使用下述命名法:原始胺基酸,位置,置換的胺基酸。因此,將位置167的Asn (N)被Thr (T)置換表示為“N167T”或“Asn167Thr”。多個突變可以使用附加標記(“+”)或(“,”)來分開,例如,“N167T+F168Y+S174C+F218Y”或“N167T, F168Y, S174C, F218Y”,表示給定位置的多個置換。在本申請的實施例中,多個突變可以使用逗號來分開,例如,N167T, F168Y, S174C, F218Y。此外,本文使用的“X”或“Xaa”可以意指任何胺基酸(例如,如上面表1所描述)。因此,本文使用的“X167T”意思是位置167的任何胺基酸被T (Thr)置換。假使原始胺基酸殘基可以是任何胺基酸殘基,也可使用簡寫來只表明位置和置換的胺基酸。因此,在標明置換時可以省略“X”或“Xaa”,例如,“167T”名稱可用來表示位置167的任何胺基酸被T (Thr)置換。此外,本文使用的“X167G,A,S,C,U,I,L,V,T”意思是位置167的任何胺基酸被G, A, S, C, U, I, L, V或T的任一個置換。假使置換胺基酸殘基可以是任何胺基酸殘基,也可使用簡寫來隻表明原始胺基酸及其位置,例如“N167”。replacement. For amino acid replacement, the following nomenclature is used: original amino acid, position, replaced amino acid. Therefore, substitution of Asn (N) at position 167 by Thr (T) is denoted as "N167T" or "Asn167Thr". Multiple mutations can be separated using additional markers ("+") or (","), e.g., "N167T+F168Y+S174C+F218Y" or "N167T, F168Y, S174C, F218Y", indicating multiple mutations at a given position replacement. In the examples of the present application, multiple mutations can be separated by commas, eg, N167T, F168Y, S174C, F218Y. Furthermore, "X" or "Xaa" as used herein can mean any amino acid (eg, as described in Table 1 above). Thus, "X167T" as used herein means that any amino acid at position 167 is replaced by T (Thr). Abbreviations may also be used to indicate only the position and substituted amino acid, provided that the original amino acid residue can be any amino acid residue. Thus, "X" or "Xaa" may be omitted when a substitution is indicated, eg, the "167T" designation may be used to indicate that any amino acid at position 167 is replaced by T (Thr). In addition, "X167G,A,S,C,U,I,L,V,T" as used herein means that any amino acid at position 167 is replaced by G, A, S, C, U, I, L, V or any permutation of T. Abbreviations may also be used to indicate only the original amino acid and its position, eg "N167", provided that the displacing amino acid residue can be any amino acid residue.
如本文使用,術語“轉基因的”指的是基因組通過引入外源遺傳物質或額外拷貝的自體遺傳物質(例如,通過轉化或重組(例如,US7410800B2))而被改變的生物體。轉基因生物可以是植物、哺乳動物、真菌、細菌或病毒。如本文使用,“轉基因植物、種子或花粉粒”指的是植物、種子或花粉粒,或者由其衍生的任何下一代的後代植物、種子或花粉粒,其中,植物、種子或花粉粒或者其後代包含引入的外源性DNA,該外源性DNA是相同品種的非轉基因植物、種子或花粉粒中最初並不存在的。此外,轉基因植物、種子或花粉粒可包含被改造的植物中原有的序列,但是其中,外源性DNA已經被改變,以便改變編碼序列的表現水平或模式。As used herein, the term "transgenic" refers to an organism whose genome has been altered by introducing exogenous genetic material or additional copies of autologous genetic material (eg, by transformation or recombination (eg, US7410800B2)). Transgenic organisms can be plants, mammals, fungi, bacteria or viruses. As used herein, "transgenic plant, seed or pollen grain" refers to a plant, seed or pollen grain, or any next generation progeny plant, seed or pollen grain derived therefrom, wherein the plant, seed or pollen grain or its The progeny contain introduced exogenous DNA that was not originally present in non-transgenic plants, seeds or pollen grains of the same variety. In addition, transgenic plants, seeds or pollen grains may contain sequences that were originally in the engineered plant, but in which the exogenous DNA has been altered so as to alter the level or pattern of expression of the coding sequence.
術語“回收變體”指的是例如通過親和純化從細菌裂解物中純化變體。The term "recovering a variant" refers to purification of the variant from bacterial lysates, eg, by affinity purification.
術語“食品”指的是具有食用價值的物質。The term "foodstuffs" refers to substances of edible value.
術語“草料”(fodder)指的是喂給家畜的物質。The term "fodder" refers to material fed to livestock.
術語“飼料”(feed)指的是用作牲畜的食品的物質。The term "feed" refers to a substance used as food for livestock.
術語“添加劑”指的是例如以少量加入到其它產品或物質中以便影響期望的性質和/或特性的化合物或物質。The term "additive" refers to a compound or substance that is added to other products or substances, eg, in small amounts, in order to affect desired properties and/or characteristics.
術語“益生元”指的是能夠誘導有益微生物生長和/或活性的化合物或物質。The term "prebiotic" refers to a compound or substance capable of inducing the growth and/or activity of beneficial microorganisms.
術語“解毒劑”指的是能夠降低和/或抑制毒性的化合物或物質。The term "antidote" refers to a compound or substance capable of reducing and/or inhibiting toxicity.
術語“營養補充劑”指的是能夠補足膳食營養含量的化合物或物質,例如,維生素和礦物質。The term "nutritional supplement" refers to compounds or substances that supplement the nutritional content of a diet, eg, vitamins and minerals.
術語“中間物”指的是在獲得本發明的最終產品的過程中(例如,在過程的中間階段)產生的化合物或物質,例如,本發明的食品、草料、飼料、添加劑(例如,食品添加劑、草料添加劑或飼料添加劑)、解毒劑、營養補充劑或益生元。The term "intermediate" refers to a compound or substance produced in the process of obtaining the final product of the present invention (eg, at an intermediate stage of the process), eg, the food, forage, feed, additive (eg, food additive) of the present invention , forage or feed additives), antidotes, nutritional supplements or prebiotics.
術語“藻類物質”(phycophytic substance)指的是來源於海藻物種的物質。The term "phycophytic substance" refers to substances derived from algal species.
胺基酸基序:如本文使用的術語“胺基酸基序”或“基序”指的是多肽的特別限定的胺基酸片段(stretch)。因此,本發明的胺基酸基序指的是給定多肽中胺基酸的短序列。Amino acid motif: The term "amino acid motif" or "motif" as used herein refers to a specifically defined stretch of amino acids of a polypeptide. Thus, an amino acid motif of the present invention refers to a short sequence of amino acids in a given polypeptide.
如本文使用的術語“OTA衍生物”指的是具有如下化學結構的化合物或物質: The term "OTA derivative" as used herein refers to a compound or substance having the following chemical structure:
在OTA衍生物的分子結構中,R1、R2和R3可以是任何原子或原子基團。尤其,R1選自H和OH構成的組,R2選自H和CH2-CH3構成的組,R3選自H和Cl構成的組。OTA衍生物可以是:赭麯黴毒素B,其中R1 是H、R2是H且R3是H;赭麯黴毒素C,R1是H、R2是CH2-CH3且R3是Cl;或者,赭麯黴毒素TA,R1是OH、R2是H且R3是Cl。尤其,術語“OTA衍生物”指的是從赭麯黴毒素B和赭麯黴毒素C構成的組選出的化合物或物質。In the molecular structure of the OTA derivative, R1, R2 and R3 can be any atom or group of atoms. In particular, R1 is selected from the group consisting of H and OH, R2 is selected from the group consisting of H and CH2-CH3, and R3 is selected from the group consisting of H and Cl. The OTA derivative can be: ochratoxin B, wherein R1 is H, R2 is H and R3 is H; ochratoxin C, wherein R1 is H, R2 is CH2-CH3 and R3 is Cl; or, ochratoxin TA, R1 is OH, R2 is H and R3 is Cl. In particular, the term "OTA derivative" refers to a compound or substance selected from the group consisting of Ochratoxin B and Ochratoxin C.
必須注意的是,如本文使用,除非在文中有明確的指出,否則單數形式“一個”(a)、“一種”(an)和“該”(the)包括複數引用。因此,例如,對“一種試劑”的引用包括一種或多種此類的不同試劑,對“該方法”的引用包括對本領域技術人員已知的等同步驟和方法的引用,本領域技術人員能夠對本文描述的方法進行修改或替代。It must be noted that, as used herein, the singular forms "a" (a), "an" (an) and "the" (the) include plural references unless the context clearly dictates otherwise. Thus, for example, reference to "a reagent" includes reference to one or more of such different reagents, and reference to "the method" includes reference to equivalent steps and methods known to those skilled in the art, capable of The methods described are modified or replaced.
除非指出,否則,在一系列要素之前的術語“至少”應理解為指的是該系列中的每個元素。本領域技術人員將意識到或者能夠僅使用常規實驗來確定與本文描述的發明的實施方案等同的眾多方案。這些等同方案也旨在包括在本發明中。Unless stated otherwise, the term "at least" preceding a series of elements should be understood to refer to each element of the series. Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, numerous equivalents to the embodiments of the invention described herein. Such equivalents are also intended to be included in the present invention.
不管在本文中哪裡使用,術語“和/或”包括“和”、“或”和“與所述術語有關的要素的全部或者任何其它組合”。Wherever used herein, the term "and/or" includes "and", "or" and "all or any other combination of the elements associated with the term."
如本文使用的術語“約”或“大約”意思是給定數值或範圍的20%以內、較佳10%以內且更較佳5%以內。The term "about" or "approximately" as used herein means within 20%, preferably within 10% and more preferably within 5% of a given value or range.
在整個說明書中以及所附的申請專利範圍中,除非上下文中有要求,否則,詞語“包括”(comprise)以及其變型諸如“包含”(comprises)和“含有”(comprising),將被理解為意指包括規定的整數或步驟或者整數或步驟的組,但是不排除其它任何整數或步驟或者整數或步驟的組。當在本文中使用時,術語“含有”(comprising)可被術語“包括”(containing)或“包含”(including)代替,或者,有時候在本文中使用時,可被術語“具有”(having)代替。Throughout this specification and the scope of the appended claims, unless the context requires otherwise, the word "comprise" and variations thereof such as "comprises" and "comprising" will be understood to mean It is meant to include the specified integer or step or group of integers or steps, but not to exclude any other integer or step or group of integers or steps. As used herein, the term "comprising" may be replaced by the term "containing" or "including" or, as sometimes used herein, by the term "having" )replace.
當在本文中使用時,“由...組成”排除請求項的要件中沒有指明的任何要件、步驟或成分。當在本文中使用時,“主要由...組成”並不排除對請求項的基本的和新穎的特徵不產生實質影響的材料或步驟。As used herein, "consisting of" excludes any element, step, or ingredient not specified in the elements of the claim. As used herein, "consisting essentially of" does not exclude material or steps that do not materially affect the basic and novel characteristics of the claimed item.
在本文的每個例子中,術語“包括”、“主要由...組成”和“由...組成”中的任何一個可以被其它兩個術語中的任一個所代替。In each instance herein, any of the terms "comprising", "consisting essentially of" and "consisting of" may be replaced by either of the other two terms.
SEQ ID NO: 1的野生型親代α/β水解酶能夠將ZEN降解為無毒的HZEN,其顯示低熔點(Tm =50°C)並且具有二聚同源二聚體四級結構。由於在工業酶產品的生產和應用中高的酶穩定性是關鍵點,因此需要進一步研發改良的α/β水解酶變體,其能夠在較高溫度解毒ZEN並且特別適合用作食物或飼料添加劑或者食物或飼料產品。The wild-type parental alpha/beta hydrolase of SEQ ID NO: 1 is capable of degrading ZEN to nontoxic HZEN, which exhibits a low melting point (Tm = 50°C) and has a dimeric homodimeric quaternary structure. Since high enzyme stability is a key point in the production and application of industrial enzyme products, there is a need for further development of improved α/β hydrolase variants that are capable of detoxifying ZEN at higher temperatures and are particularly suitable for use as food or feed additives or food or feed products.
在本發明的過程中,在具有SEQ ID NO: 1、指導由同源二聚體向同源四聚體的四級結構形成且因此尤其增強了溫度穩定性的親代α/β水解酶中識別出特定的胺基酸置換。因此,本發明涉及本文描述的用於降解玉米赤黴烯酮(ZEN)的改良水解酶變體的用途。In the process of the present invention, in the parental alpha/beta hydrolase having SEQ ID NO: 1, which directs the formation of a quaternary structure from homodimers to homotetramers and thus in particular enhances temperature stability Specific amino acid substitutions were identified. Accordingly, the present invention relates to the use of the improved hydrolase variants described herein for degrading zearalenone (ZEN).
ZEN(CAS註冊號#17924-92-4,(4S,12E)-16,18-二羥基-4-甲基-3-氧雜雙環[12.4.0] 十八碳-1(14),12,15,17-四烯-2,8-二酮)是具有如下結構式的非甾體雌激素大環內酯,通過聚酮代謝途徑合成: ZEN (CAS Reg. #17924-92-4, (4S,12E)-16,18-dihydroxy-4-methyl-3-oxabicyclo[12.4.0]octadeca-1(14),12 ,15,17-tetraene-2,8-dione) is a non-steroidal estrogenic macrolide with the following structural formula, synthesized through the polyketone metabolic pathway:
然而,多種ZEN衍生物也會發生在自然界中,可通過ZEN的酶修飾或化學修飾來形成。例子包括糖苷ZEN綴合物(conjugate)或者包含硫酸鹽的那些,由真菌、植物或哺乳動物代謝以及人類或動物體等中形成的ZEN代謝物來形成。下面將ZEN衍生物理解為自然發生的或者通過化學合成或生物化學合成來合成的ZEN綴合物或ZEN代謝物,尤其是,α-玉米赤黴烯醇(α-ZEL;CAS註冊號# 36455-72-8;(2E,7R,11S)-7,15,17-三羥基-11-甲基-12-氧雜雙環[12.4.0]- 十八碳-1(18),2,14,16-四烯-13-酮),β-玉米赤黴烯醇(β- ZEL;CAS註冊號#71030-11-0;(2E,7S,11S)-7,15,17-三羥基-11-甲基-12-氧雜雙環[12.4.0] 十八碳-1(18),2,14,16-四烯-13-酮),α-玉米赤黴醇(α-ZAL;CAS註冊號# 26538-44-3;(7R,11S)-7,15,17-三羥基-11-甲基-12-氧雜雙環[12.4.0] 十八碳-1(18),14,16-三烯-13-酮),β-玉米赤黴醇(β- ZAL;CAS註冊號# 42422-68-4;(7S,11S)-7,15,17-三羥基-11-甲基-12-氧雜雙環[12.4.0]-十八碳-1(14),15,17-三烯-13-酮),玉米赤黴烯酮14-硫酸鹽(Z14S;[(2E,11S)-15-羥基-11-甲基-7,13-二氧-12-氧雜雙環[12.4.0] 十八碳-1(18),2,14,16-四烯-17-yl]硫酸氫鹽),玉米赤黴烯酮-14-糖苷(Z14G;(2E,11S)-15-羥基-11-甲基-17-[(3R,4S,5S,6R)-3,4,5-三羥基-6-(羥甲基)- 四氫吡喃-2-基]氧-12-氧雜雙環[12.4.0] 十八碳1(18)2,14,16-四烯-7,13-二酮),以及玉米赤黴酮(ZAN;CAS註冊號# 5975-78-0;(11S)-15,17-二羥基-11-甲基-12-氧雜雙環-[12.4.0] 十八碳-1(18),14,16-三烯-7,13-二酮)。However, various ZEN derivatives also occur in nature and can be formed by enzymatic or chemical modification of ZEN. Examples include glycoside ZEN conjugates, or those containing sulfate, formed from ZEN metabolites that are metabolized by fungi, plants, or mammals, as well as in the human or animal body, and the like. ZEN derivatives are hereinafter understood to be ZEN conjugates or ZEN metabolites that are naturally occurring or synthesized by chemical or biochemical synthesis, in particular α-zearalenol (α-ZEL; CAS Registry No. 36455 -72-8;(2E,7R,11S)-7,15,17-trihydroxy-11-methyl-12-oxabicyclo[12.4.0]-octadeca-1(18),2,14 , 16-tetraen-13-one), β-zearalenol (β-ZEL; CAS Reg. #71030-11-0; (2E,7S,11S)-7,15,17-trihydroxy- 11-Methyl-12-oxabicyclo[12.4.0]octadec-1(18),2,14,16-tetraen-13-one), α-zearatol (α-ZAL; CAS Registration number # 26538-44-3; (7R,11S)-7,15,17-trihydroxy-11-methyl-12-oxabicyclo[12.4.0]octadeca-1(18),14, 16-trien-13-one), β-zearatol (β-ZAL; CAS Reg. # 42422-68-4; (7S,11S)-7,15,17-trihydroxy-11-methyl) -12-oxabicyclo[12.4.0]-octadec-1(14),15,17-trien-13-one), zearalenone 14-sulfate (Z14S; [(2E,11S )-15-hydroxy-11-methyl-7,13-dioxo-12-oxabicyclo[12.4.0]octadec-1(18),2,14,16-tetraene-17-yl] bisulfate), zearalenone-14-glycoside (Z14G; (2E,11S)-15-hydroxy-11-methyl-17-[(3R,4S,5S,6R)-3,4,5 -Trihydroxy-6-(hydroxymethyl)-tetrahydropyran-2-yl]oxy-12-oxabicyclo[12.4.0]octadeca 1(18)2,14,16-tetraene-7 , 13-dione), and zearalenone (ZAN; CAS Reg. # 5975-78-0; (11S)-15,17-dihydroxy-11-methyl-12-oxabicyclo-[12.4. 0] octadeca-1(18),14,16-triene-7,13-dione).
ZEN以及ZEN衍生物尤其是α-ZEL、β-ZEL、Z14S、α-ZAL、β-ZAL、Z14G和ZAN也可在加工的食物或動物飼料產品中檢測到,諸如麵包或啤酒,原因在於它們高度的化學和物理穩定性。ZEN and ZEN derivatives especially α-ZEL, β-ZEL, Z14S, α-ZAL, β-ZAL, Z14G and ZAN can also be detected in processed food or animal feed products, such as bread or beer, because of their High chemical and physical stability.
序列號是1至35的任何多肽都能成功水解ZEN或ZEN衍生物。認為,ZEN或其衍生物的水解按照以下反應機理在酯基處發生: Any polypeptide with sequence numbers 1 to 35 can successfully hydrolyze ZEN or ZEN derivatives. It is believed that the hydrolysis of ZEN or its derivatives occurs at the ester group according to the following reaction mechanism:
ZEN水解形成無毒的水解玉米赤黴烯酮(HZEN)和/或水解ZEN衍生物可以利用本發明的α/β-水解酶來發生。HZEN進一步脫羧得到脫羧水解ZEN (DHZEN)和/或脫羧水解ZEN衍生物被認為是自發的。Hydrolysis of ZEN to form non-toxic hydrolyzed zearalenone (HZEN) and/or hydrolyzed ZEN derivatives can occur using the alpha/beta-hydrolases of the present invention. Further decarboxylation of HZEN to give decarboxylated hydrolyzed ZEN (DHZEN) and/or decarboxylated hydrolyzed ZEN derivatives is believed to be spontaneous.
本文描述的α/β-水解酶和變體能夠並適合降解ZEN。例如,α/β-水解酶能夠適合於ZEN和/或其衍生物的酯基的無輔因子水解切割(例如,水解依賴於H 2O)。 The alpha/beta-hydrolases and variants described herein are capable and suitable for degrading ZEN. For example, alpha/beta-hydrolases can be adapted for cofactor-free hydrolytic cleavage of ester groups of ZEN and/or derivatives thereof (eg, hydrolysis is H2O dependent).
可以按照如下方法來測量ZEN降解:製備玉米赤黴烯酮降解分析緩衝液(118.5 mM NaCl, 8.55 mM 醋酸, 14.9 mM 醋酸鹽, 0.1 mg/ml BSA, pH 5.0, (Jantratid, E., Janssen, N., Reppas, C. & Dressman, J. B. (2008): Dissolution media simulating conditions in the proximal human gastrointestinal tract: An update. Pharmaceutical Research 25 (7): 1663-1576), 含有0.1 mg/ml牛血清白蛋白和0.52 ppm玉米赤黴烯酮作為底物),在37.0℃預熱,將960µl試樣的分析緩衝液轉移至96深井板的反應管中。用活動蓋密封該板,37.0℃保存在DWP-熱振動篩中直至玉米赤黴烯酮降解分析開始。使用純化的玉米赤黴烯酮-切割多肽通過在樣本緩衝液(Teorell Stenhagen緩衝液pH 7.5, 含有0.1 mg/ml牛血清白蛋白)中稀釋至比最終玉米赤黴烯酮降解實驗中分析的濃度高25倍來製備酶工作液,玉米赤黴烯酮-切割多肽的濃度可在給定條件下有效降解玉米赤黴烯酮。為了開始玉米赤黴烯酮降解分析,將40.0 µl酶工作液加入到含有960.0 µl分析緩衝液的試管中,從而在分析反應中實現0.5 ppm的最終ZEN濃度。加入pH 7.5的酶工作液不會改變pH 5.0的玉米赤黴烯酮降解反應。37.0℃,持續振動的DWP-熱振動篩中孵育玉米赤黴烯酮降解反應。玉米赤黴烯酮降解反應開始之後立即用吸管頭再懸浮混合,將120.0 µl的0.0 h樣本轉移至新的PCR板的管中,用管帽密封。在幾個時間點(例如5.0, 10.0, 20.0, 30.0, 45.0, 60.0, 90.0分鐘)之後從玉米赤黴烯酮降解反應取出額外樣本。一旦從降解反應中取出樣本,就通過在99.0℃在熱塊(thermo-block)(例如,Thermal Shake lite, 460-029, VWR)孵育10.0分鐘來熱滅活該樣本中的玉米赤黴烯酮切割多肽。隨後,對管離心(3.0分鐘,室溫,2500 x g),將90.0 µl上清液轉移至有邊緣的PCR板(例如,twin.tec®PCR板,0030128648,Eppendorf AG),其用熱封膜(例如,熱封膜,0030127838, Eppendof AG)封閉。這些樣本板儲存在4.0℃,直至HPLC-FLD測量。按照Vekiru et al. (Vekiru et al. (2016) ‘Isolation and characterization of enzymatic zearalenone hydrolysis reaction products’ World Mycotoxin Journal 9:353-363)描述的改進的HPLC-FLD方法測量玉米赤黴烯酮濃度。278.0 nm消光和465.0 nm發射,在HPLC-FLD上進行分析。當在40.0℃在Kinetex 5µm EVO C18 100 A 50.0 x 2.1 mm柱(00B-4633-AN, Phenomenex Inc.)上完成分離時,玉米赤黴烯酮的保留時間是1.8分鐘,前述分離採用了如下方法:使用溶劑A(95.0 %乙腈 + 4.9 %水 + 0.1 %甲酸)和溶劑B(5.0 %乙腈+ 94.9 % 水 + 0.1 %甲酸),梯度:0.0-0.5分鐘10 % 相B, 0.5-2.0 分鐘線性增加至50.0 %相B,然後在0.1分鐘內減至10 % 相B,持續進行,總運行時間2.3分鐘。流速設置為1.5 ml/min,進樣體積是5.0 μl。對各種分析採用了類似的採集設置。基於玉米赤黴烯酮外標物的校準,對玉米赤黴烯酮進行定量。所取反應樣品的玉米赤黴烯酮濃度(µM)對取樣時間點作圖。線性玉米赤黴烯酮降解隨時間的斜率以酶促反應體積中每分鐘減少的μmol玉米赤黴烯酮計算。考慮到純化的玉米赤黴烯酮-切割多肽的可能的稀釋並將這些合適的稀釋因素包括在計算中,計算以每分鐘每mg純化的酶降解的µmol玉米赤黴烯酮(µmol ZEN/min/mg)表示的酵素比活性(specific enzymatic activity)。ZEN degradation can be measured as follows: Zearalenone degradation assay buffer (118.5 mM NaCl, 8.55 mM acetic acid, 14.9 mM acetate, 0.1 mg/ml BSA, pH 5.0, (Jantratid, E., Janssen, N., Reppas, C. & Dressman, J. B. (2008): Dissolution media simulating conditions in the proximal human gastrointestinal tract: An update. Pharmaceutical Research 25(7): 1663-1576), with 0.1 mg/ml bovine serum albumin and 0.52 ppm zearalenone as substrate), pre-warmed at 37.0 °C, and transfer 960 µl of assay buffer to a reaction tube in a 96-deep-well plate. The plate was sealed with a removable lid and stored in a DWP-thermal shaker at 37.0°C until the start of the zearalenone degradation assay. Use purified zearalenone-cleavage polypeptides by diluting in sample buffer (Teorell Stenhagen buffer pH 7.5, containing 0.1 mg/ml bovine serum albumin) to concentrations higher than those analyzed in the final zearalenone degradation experiments 25 times higher to prepare the enzyme working solution, the concentration of zearalenone-cleaving polypeptide can effectively degrade zearalenone under the given conditions. To begin the zearalenone degradation assay, add 40.0 µl of the enzyme working solution to a tube containing 960.0 µl of assay buffer to achieve a final ZEN concentration of 0.5 ppm in the assay reaction. The addition of pH 7.5 enzyme working solution did not alter the pH 5.0 zearalenone degradation reaction. The zearalenone degradation reaction was incubated in a DWP-thermal shaker with continuous shaking at 37.0°C. Immediately after the zearalenone degradation reaction started, resuspend and mix with a pipette tip, transfer 120.0 µl of the 0.0 h sample to a tube on a new PCR plate, and seal it with a tube cap. Additional samples were taken from the zearalenone degradation reaction after several time points (eg, 5.0, 10.0, 20.0, 30.0, 45.0, 60.0, 90.0 min). Once the sample is removed from the degradation reaction, thermally inactivate zearalenone cleavage in the sample by incubating it in a thermo-block (eg, Thermal Shake lite, 460-029, VWR) for 10.0 minutes at 99.0°C peptide. Subsequently, the tubes were centrifuged (3.0 min, room temperature, 2500 x g) and 90.0 µl of the supernatant was transferred to a rimmed PCR plate (e.g., twin.tec® PCR plate, 0030128648, Eppendorf AG), which was sealed with a heat-sealed film (for example, heat-sealing film, 0030127838, Eppendof AG) to seal. These sample plates were stored at 4.0°C until HPLC-FLD measurement. Zearalenone concentrations were measured according to a modified HPLC-FLD method described by Vekiru et al. (Vekiru et al. (2016) 'Isolation and characterization of enzymatic zearalenone hydrolysis reaction products' World Mycotoxin Journal 9:353-363). Extinction at 278.0 nm and emission at 465.0 nm, analyzed on HPLC-FLD. The retention time for zearalenone was 1.8 minutes when separated on a Kinetex 5µm EVO C18 100 A 50.0 x 2.1 mm column (00B-4633-AN, Phenomenex Inc.) at 40.0°C using the following method : Using solvent A (95.0 % acetonitrile + 4.9 % water + 0.1 % formic acid) and solvent B (5.0 % acetonitrile + 94.9 % water + 0.1 % formic acid), gradient: 0.0-0.5 min 10 % phase B, 0.5-2.0 min linear Increase to 50.0 % Phase B, then reduce to 10 % Phase B in 0.1 min, continuing for a total run time of 2.3 min. The flow rate was set to 1.5 ml/min and the injection volume was 5.0 μl. Similar acquisition settings were used for the various analyses. Zearalenone was quantified based on the calibration of the zearalenone external standard. The zearalenone concentration (µM) of the reaction samples taken is plotted against the sampling time point. The slope of linear zearalenone degradation over time was calculated as μmol zearalenone decreased per minute in the volume of the enzymatic reaction. Taking into account possible dilutions of purified zearalenone-cleavage polypeptides and including these appropriate dilution factors in the calculation, calculate in µmol zearalenone degraded per minute per mg of purified enzyme (µmol ZEN/min). /mg) expressed the specific enzymatic activity (specific enzymatic activity).
在本文中,應注意,術語“單位”(unit)或“U”指的是測量酶的催化活性,定義為在設定條件下每分鐘發生反應或切割的底物(在本發明中即玉米赤黴烯酮)的微摩爾(µmol)數。利用酶或多肽溶液的“活性”定義了酶或多肽溶液的酶濃度,表示為溶液的單位每毫升(U/ml)或單位每升(U/l)。In this context, it should be noted that the term "unit" or "U" refers to the measurement of the catalytic activity of an enzyme, defined as the reaction or cleavage of substrate per minute under set conditions (in the present invention, zein red Micromoles (µmol) of mycolene). The enzyme concentration of the enzyme or polypeptide solution is defined by the "activity" of the enzyme or polypeptide solution, expressed in units per milliliter (U/ml) or units per liter (U/l) of the solution.
在一些實施方案中,本發明提供了親代α/β水解酶的變體,該變體包括在對應於如下位置的一個或多個位置的置換:SEQ ID NO: 1(較佳使用SEQ ID NO: 1的編號)的167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59, 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293和304,其中,所述變體具有α/β水解酶活性,並且其中,該變體是與SEQ ID NO: 1的多肽具有至少71%(較佳:至少72%, 至少73%, 至少74%, 至少75%, 至少76%, 至少77%, 至少78%, 至少79%, 至少80%, 至少81%, 至少82%, 至少83%, 至少84%, 至少85%, 至少86%,至少87%, 至少88%, 至少 89%, 至少90%, 至少91%, 至少92%, 至少93%, 至少94%, 至少95%, 至少95.5%, 至少96%, 至少96.5%, 至少97%, 至少97.5%, 至少98%, 至少98.5%, 至少99%, 或至少99.5%)但小於100%序列同一性的多肽,較佳地,所述變體具有水解酶EC: 3.1.1.-活性。In some embodiments, the invention provides variants of the parental alpha/beta hydrolase comprising substitutions at one or more positions corresponding to SEQ ID NO: 1 (preferably using SEQ ID NO: 1 number) of 167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59 , 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293 and 304, wherein the variant has alpha/beta hydrolase activity, and wherein the variant is With the polypeptide of SEQ ID NO: 1 has at least 71% (preferably: at least 72%, at least 73%, at least 74%, at least 75%, at least 76%, at least 77%, at least 78%, at least 79%, at least 80% %, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 95.5%, at least 96%, at least 96.5%, at least 97%, at least 97.5%, at least 98%, at least 98.5%, at least 99%, or at least 99.5%) but Polypeptides of less than 100% sequence identity, preferably, the variant has hydrolase EC: 3.1.1.-activity.
在其它實施方案中,本發明的變體具有如下一種或多種特性:(i)相對於親代α/β水解酶得到改進的性質,其中所述改進的性質包括提高的溫度穩定性,較佳地,相比於SEQ ID NO: 1,提高的溫度穩定性;(ii)能夠四聚體化,較佳地,具有四聚體四級結構,進一步較佳地,所述四聚體化是同源四聚體化;(iii)具有大於50℃的熔點(Tm),較佳地,所述Tm範圍是大約51℃至大約70℃;(iv)能夠降解玉米赤黴烯酮和/或其衍生物;(v)具有至少一個(較佳至少兩個,更較佳至少三個,最較佳至少四個)胺基酸基序,所述胺基酸基序與從如下選出的胺基酸序列具有至少80%(較佳至少83%,更較佳至少90%)序列同一性:(a) SEQ ID NO: 36 (QVDLGEX 1X 2MN),其中,X 1是V 或I, 較佳 V,並且其中,X 2是V 或T, 較佳 V;(b) SEQ ID NO: 37 (EYDPEWX 3RX 4FX 5EGTV),其中,X 3是G或A, 較佳A,並且其中,X 4是A或V, 較佳A,並且其中,X 5是F或Y;(c) SEQ ID NO: 38 (MLX 6QVKTPX 7LX 8THH),其中,X 6是S或G, 較佳S,並且其中,X 7是I或V, 較佳 I,並且其中,X 8是 I或L, 較佳 I;和(d) SEQ ID NO: 39 (PAX 9LLX 10PEQTGSWWSYEX 11X 12X 13GLLX 14EX 15FHVX 16AVDX 17RGQGRSX 18WTPX 19RYSLDNFGNDLVRFIX 20LVX 21KRPVX 22VX 23GNSSGGX 24LAAWLSAYX 25MPGQX 26RX 27X 28LCEDX 29X 30FFASELVPAX 31GHSVX 32QX 33AGPX 34FELX 35R),其中,X 9是V或L, 較佳L,並且其中,X 10是L或I, 較佳L,並且其中,X 11是P或E, 較佳P,並且其中,X 12是V或 A, 較佳V,並且其中,X 13是I或M, 較佳I,並且其中,X 14是A或S, 較佳A,並且其中,X 15是S, N或H, 較佳S,並且其中,X 16是F或Y, 較佳 F,並且其中,X 17是I或L, 較佳I,並且其中,X 18是T或 S, 較佳T,並且其中,X 19是K或R, 較佳 K,並且其中,X 20是S, A或N, 較佳S,並且其中,X 21是V或I, 較佳V,並且其中,X 22是I或V, 較佳 I,並且其中,X 23是S或A, 較佳S,並且其中,X 24是V或L, 較佳 V,並且其中,X 25是A或 S, 較佳A,並且其中,X 26是I或L, 較佳I,並且其中,X 27是A或G, 較佳A,並且其中,X 28是A 或V, 較佳A,並且其中,X 29是T, A或P, 較佳T,並且其中,X 30是P或A, 較佳P,並且其中,X 31是Y或H, 較佳H,並且其中,X 32是L或R, 較佳R,並且其中,X 33是A或G, 較佳A,並且其中,X 34是A或V, 較佳A,並且其中,X 35是Y或F, 較佳Y。 In other embodiments, the variants of the present invention have one or more of the following properties: (i) improved properties relative to the parent alpha/beta hydrolase, wherein the improved properties include increased temperature stability, preferably ground, compared to SEQ ID NO: 1, improved temperature stability; (ii) capable of tetramerization, preferably, having a tetramer quaternary structure, further preferably, the tetramerization is homotetramerizes; (iii) has a melting point (Tm) greater than 50°C, preferably the Tm ranges from about 51°C to about 70°C; (iv) is capable of degrading zearalenone and/or Derivatives thereof; (v) having at least one (preferably at least two, more preferably at least three, most preferably at least four) amino acid motifs associated with an amine selected from The amino acid sequence has at least 80% (preferably at least 83%, more preferably at least 90%) sequence identity: (a) SEQ ID NO: 36 (QVDLGEX 1 X 2 MN), wherein X 1 is V or I, preferably V, and wherein X 2 is V or T, preferably V; (b) SEQ ID NO: 37 (EYDPEWX 3 RX 4 FX 5 EGTV) wherein X 3 is G or A, preferably A, and wherein X 4 is A or V, preferably A, and wherein X 5 is F or Y; (c) SEQ ID NO: 38 (MLX 6 QVKTPX 7 LX 8 THH), wherein X 6 is S or G, preferably S, and wherein X is I or V, preferably I, and wherein X is I or L, preferably I; and (d) SEQ ID NO: 39 (PAX 9 LLX 10 PEQTGSWWSYEX 11 X 12 X 13 GLLX 14 EX 15 FHVX 16 AVDX 17 RGQGRSX 18 WTPX 19 RYSLDNFGNDLVRFIX 20 LVX 21 KRPVX 22 VX 23 GNSSGGX 24 LAAWLSAYX 25 MPGQX 26 RX 27 X 28 LCEDX 29 X 30 FFASELVPAX 31 GHSVX 32 QX 33 AGPX 34 FELX 35 R),其中, X 9 is V or L, preferably L, and wherein X 10 is L or I, preferably L, and wherein X 11 is P or E, preferably P, and wherein X 12 is V or A, Preferably V, and wherein X is I or M, preferably I, and wherein X is A or S, preferably A, and wherein X is S, N or H, preferably S, and wherein , X 16 is F or Y, preferably F, and wherein X 17 is I or L, preferably I, and wherein X 18 is T or S, Preferably T, and wherein X is K or R, preferably K, and wherein X is S, A or N, preferably S, and wherein X is V or I, preferably V, and wherein , X 22 is I or V, preferably I, and wherein X 23 is S or A, preferably S, and wherein X 24 is V or L, preferably V, and wherein X 25 is A or S, Preferably A, and wherein X is I or L, preferably I, and wherein X is A or G, preferably A, and wherein X is A or V, preferably A, and wherein X 29 is T, A or P, preferably T, and wherein X 30 is P or A, preferably P, and wherein X is Y or H, preferably H, and wherein X is L or R, R is preferred, and wherein X 33 is A or G, preferably A, and wherein X 34 is A or V, preferably A, and wherein X 35 is Y or F, preferably Y.
在其它實施方案中,本發明的變體包括如下置換的一種或多種,或其等效(例如保守性)胺基酸置換(例如,如本文表1所述):
在其它實施方案中,本發明的親代α/β水解酶(較佳具有EC:3.1.1.-水解酶活性)選自如下多肽構成的組:(i) 與SEQ ID NO: 1的多肽具有至少60%(較佳地,至少81 %,至少82%,至少83%,至少84%,至少85%,至少86%,至少87%,至少88%,至少89%,至少90%,至少91 %,至少92%,至少93%,至少94%,至少95%,至少95.5%,至少96%,至少96.5%,至少97%,至少97.5%,至少98%,至少98.5%,至少99%, 或至少99.5%, 或100%)序列同一性的多肽;(ii) SEQ ID NO: 1的多肽的片段,其中所述片段具有α/β水解酶活性,較佳EC:3.1.1.- 水解酶活性。In other embodiments, the parental alpha/beta hydrolase (preferably having EC: 3.1.1.-hydrolase activity) of the invention is selected from the group consisting of the following polypeptides: (i) the polypeptide with SEQ ID NO: 1 have at least 60% (preferably, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 95.5%, at least 96%, at least 96.5%, at least 97%, at least 97.5%, at least 98%, at least 98.5%, at least 99% , or at least 99.5%, or 100%) polypeptides of sequence identity; (ii) fragments of the polypeptides of SEQ ID NO: 1, wherein the fragments have alpha/beta hydrolase activity, preferably EC: 3.1.1.- Hydrolase activity.
在其它實施方案中,本發明的變體(i)包括從如下置換構成的組中選出的置換或者由如下置換構成的組中選出的置換所構成:
在其它實施方案中,本發明提供了獲得親代α/β水解酶的變體(較佳具有EC:3.1.1.-水解酶活性)和/或提高所述親代α/β水解酶的穩定性的方法,所述方法包括:在與SEQ ID NO: 1的位置167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59, 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293和304(較佳使用SEQ ID NO: 1的編號)相對應的一個或多個位置處,向親代α/β水解酶引入置換,其中,變體具有α/β水解酶活性;和,回收變體;較佳地,所述親代α/β水解酶是依據前述任一請求項,進一步較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%序列同一性。In other embodiments, the present invention provides for obtaining variants of the parental alpha/beta hydrolase (preferably having EC: 3.1.1.-hydrolase activity) and/or increasing said parental alpha/beta hydrolase A method of stability, the method comprising: at positions 167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28 with SEQ ID NO: 1 , 39, 47, 50, 57, 58, 59, 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293 and 304 (preferably using SEQ ID NO: 1 numbering), introducing substitutions into the parental alpha/beta hydrolase at one or more corresponding positions, wherein the variant has alpha/beta hydrolase activity; and, recovering the variant; preferably, the parental alpha The /β hydrolase is according to any one of the preceding claims, and further preferably, the parental α/β hydrolase has at least 95% sequence identity with the polypeptide of SEQ ID NO: 1.
在其它實施方案中,本發明涉及編碼本發明的變體的多核苷酸。在其它實施方案中,本發明涉及包括本發明的多核苷酸的核酸構建體。在其它實施方案中,本發明涉及包括本發明的多核苷酸的核酸構建體。在其它實施方案中,本發明涉及重組宿主細胞,其包括如下至少一者:(i) 本發明的變體和/或親代α/β水解酶;(ii) 本發明的多核苷酸;(iii) 本發明的核酸構建體;和/或,(iv) 本發明的表現載體。In other embodiments, the present invention relates to polynucleotides encoding variants of the present invention. In other embodiments, the present invention relates to nucleic acid constructs comprising the polynucleotides of the present invention. In other embodiments, the present invention relates to nucleic acid constructs comprising the polynucleotides of the present invention. In other embodiments, the present invention relates to recombinant host cells comprising at least one of: (i) a variant and/or parental alpha/beta hydrolase of the present invention; (ii) a polynucleotide of the present invention; ( iii) a nucleic acid construct of the invention; and/or, (iv) an expression vector of the invention.
因此,本發明還涉及編碼本文描述的α/β水解酶變體的核酸分子。核酸可被引入或插入表現載體。術語“表現載體”指的是能夠在體內或體外表現基因的核酸分子構建體。尤其,它可以包括DNA構建體,該DNA構建體適合將多肽-編碼核苷酸序列轉入宿主細胞(例如重組宿主細胞)以便整合至基因組或游離於染色體外空間,並且在細胞內表現多肽-編碼核苷酸序列,並且可選地,將多肽運輸至細胞外。如本文描述的表現載體可在宿主細胞中表現。術語“宿主細胞”指的是含有待表現核苷酸序列或表現載體的所有細胞,其能夠產生根據本發明的酶或多肽。尤其,這指的是原核細胞和/或真核細胞,較佳地,畢赤酵母、大腸桿菌、枯草芽孢桿菌、鏈黴菌、漢遜酵母、木黴菌、乳酸菌、曲黴菌、植物細胞和/或芽孢桿菌的孢子、木黴或麯黴。本文使用的名稱畢赤酵母( P. pastoris)與名稱畢赤酵母( Komagataella pastoris)意思相同,畢赤酵母( P. pastoris)是較舊名稱,畢赤酵母( K. pastoris)是較新的系統名稱(Yamada et al. (1995) ‘The Phylogenetic Relationships of Methanol-assimilating Yeasts Based on the Partial Sequences of 18S and 26S Ribosomal RNAs: The Proposal of KomagataellaGen. Nov. (Saccharomycetaceae)’ Bioscience, Biotechnology and Biochemistry, Vol. 59, issue 3, pp. 439-444)。尤其,畢赤酵母( Komagataella pastoris)的種最近已經重新界定為是法夫駒形氏酵母( Komagataella phaffii)(Kurtzman (2009) “Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis.” J Ind Microbiol Biotechnol. 36(11):1435-8)。本文使用的法夫駒形氏酵母( Komagataella phaffii)例如涉及菌株 Komagataella phaffiiCBS 7435、 Komagataella phaffiiGS115或 Komagataella phaffiiJC308。 Accordingly, the present invention also relates to nucleic acid molecules encoding the alpha/beta hydrolase variants described herein. Nucleic acids can be introduced or inserted into expression vectors. The term "expression vector" refers to a nucleic acid molecular construct capable of expressing a gene in vivo or in vitro. In particular, it may include a DNA construct suitable for transferring a polypeptide-encoding nucleotide sequence into a host cell (eg, a recombinant host cell) for integration into the genome or episomal extrachromosomal space, and for intracellular expression of the polypeptide- The encoding nucleotide sequence, and optionally, the polypeptide is transported extracellularly. Expression vectors as described herein can be expressed in host cells. The term "host cell" refers to all cells containing the nucleotide sequence or expression vector to be expressed, which are capable of producing the enzymes or polypeptides according to the invention. In particular, this refers to prokaryotic cells and/or eukaryotic cells, preferably Pichia, Escherichia coli, Bacillus subtilis, Streptomyces, Hansenula, Trichoderma, Lactobacillus, Aspergillus, plant cells and/or Spores of Bacillus, Trichoderma or Aspergillus. The name P. pastoris used herein is synonymous with the name Komagataella pastoris , P. pastoris being the older name and K. pastoris being the newer system Title (Yamada et al. (1995) 'The Phylogenetic Relationships of Methanol-assimilating Yeasts Based on the Partial Sequences of 18S and 26S Ribosomal RNAs: The Proposal of Komagataella Gen. Nov. (Saccharomycetaceae)' Bioscience, Biotechnology and Biochemistry, Vol. 59, issue 3, pp. 439-444). In particular, the species of Komagataella pastoris has recently been redefined as Komagataella phaffii (Kurtzman (2009) “Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis). "J Ind Microbiol Biotechnol. 36(11):1435-8). As used herein, Komagataella phaffii refers , for example, to the strains Komagataella phaffii CBS 7435, Komagataella phaffii GS115 or Komagataella phaffii JC308.
在其它實施方案中,本發明涉及轉基因植物、轉基因種子或轉基因花粉粒,其包括如下的一種或多種(較佳多個):(i) 本發明的變體和/或親代α/β水解酶;(ii) 本發明的多核苷酸;(iii) 本發明的核酸構建體;(iv) 本發明的表現載體;和/或(v) 本發明的重組宿主細胞。In other embodiments, the present invention relates to transgenic plants, transgenic seeds or transgenic pollen grains comprising one or more (preferably more) of the following: (i) variants of the present invention and/or parental alpha/beta hydrolysis (ii) polynucleotides of the invention; (iii) nucleic acid constructs of the invention; (iv) expression vectors of the invention; and/or (v) recombinant host cells of the invention.
在其它實施方案中,本發明涉及食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物,和/或其混合物,它們包括如下的一種或多種:(i) 本發明的變體和/或親代α/β水解酶;較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%的序列同一性;(ii) 本發明的多核苷酸;(iii) 本發明的核酸構建體;(iv) 本發明的表現載體;(v) 本發明的重組宿主細胞;(vi) 本發明的轉基因植物、轉基因種子和/或轉基因花粉粒。In other embodiments, the present invention relates to food, intermediate food; forage, intermediate forage; feed, intermediate forage; additive (preferably, food additive, forage additive or feed additive), intermediate additive (preferably, food intermediate additive , forage intermediate additives or feed intermediate additives); antidote, intermediate antidote; nutritional supplements, intermediate nutritional supplements; prebiotics, intermediate prebiotics, silage inoculation bacteria; antidote; veterinary composition; pharmaceutical composition , and/or mixtures thereof, which include one or more of the following: (i) a variant of the present invention and/or a parent alpha/beta hydrolase; preferably, the parent alpha/beta hydrolase and SEQ ID The polypeptide of NO: 1 has at least 95% sequence identity; (ii) the polynucleotide of the present invention; (iii) the nucleic acid construct of the present invention; (iv) the expression vector of the present invention; (v) the recombinant of the present invention host cells; (vi) transgenic plants, transgenic seeds and/or transgenic pollen grains of the invention.
在其它實施方案中,本發明涉及組合物或試劑盒,其包括如下的一種或多種:(i) 本發明的變體和/或親代α/β水解酶;較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%的序列同一性;(ii) 本發明的多核苷酸;(iii) 本發明的核酸構建體;(iv) 本發明的表現載體;(v) 本發明的重組宿主細胞;(vi) 本發明的轉基因植物、轉基因種子和/或轉基因花粉粒;和/或(vii) 本發明的食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物,和/或其混合物。In other embodiments, the present invention relates to a composition or kit comprising one or more of: (i) a variant of the present invention and/or a parent alpha/beta hydrolase; preferably, the parent The alpha/beta hydrolase has at least 95% sequence identity with the polypeptide of SEQ ID NO: 1; (ii) the polynucleotide of the present invention; (iii) the nucleic acid construct of the present invention; (iv) the expression vector of the present invention (v) recombinant host cells of the present invention; (vi) transgenic plants, transgenic seeds and/or transgenic pollen grains of the present invention; and/or (vii) foods, intermediate foods; forages, intermediate forages; feed, Intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); antidote, intermediate antidote; nutritional supplements, Intermediate nutritional supplements; prebiotics, intermediate prebiotics, silage inoculants; antidotes; veterinary compositions; pharmaceutical compositions, and/or mixtures thereof.
因此,本發明還涉及包括本文描述的α/β水解酶變體的組合物。較佳地,組合物可以是食物或飼料添加劑或者食物或飼料產品。製備這些食物組合物和/或飼料組合物的方法對本領域技術人員來說是已知的,尤其是在WO 99/35240中被描述。Accordingly, the present invention also relates to compositions comprising the alpha/beta hydrolase variants described herein. Preferably, the composition may be a food or feed additive or food or feed product. Methods of preparing these food and/or feed compositions are known to those skilled in the art and are described in particular in WO 99/35240.
在其它實施方案中,本發明的組合物或試劑盒還包括營養學上可接受的載體(例如水)和/或本發明的親代α/β水解酶,較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%的序列同一性。In other embodiments, the compositions or kits of the present invention further comprise a nutritionally acceptable carrier (eg, water) and/or a parental alpha/beta hydrolase of the present invention, preferably, the parental alpha /β hydrolase has at least 95% sequence identity with the polypeptide of SEQ ID NO: 1.
在一些其它實施方案中,本發明的組合物或試劑盒還包括如下的一種或多種: (i)能夠去除OTA和/或至少一種OTA衍生物(例如赭麯黴毒素B和/或赭麯黴毒素C)的毒性的一種或多種其它多肽,進一步較佳地,所述一種或多種其它多肽屬M20肽酶氨基醯化酶1-樣蛋白2-樣氨基水解酶亞家族(例如,M20肽酶ACY1L2氨基水解酶亞家族,例如,根據保守結構域數據庫(例如https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05672)標識符是cd05672,和/或,具有氨肽酶活性(例如EC 3.4.11.10),和/或,包括羧肽酶活性(例如羧肽酶A和/或B活性,例如分別具有EC 3.4.17.1和/或EC 3.4.17.2),和/或,嗜熱菌蛋白酶活性(例如具有EC 3.4.24.27)); (ii)能夠去除一種或多種黴菌毒素(例如,ZEN和/或單端孢真菌毒素諸如脫氧雪腐鐮刀菌烯醇(deoxynivalenol)、瓜萎鐮菌醇(nivalenol)、新茄病鐮刀菌烯醇(neosolaniol)、毛黴素(trichotecin)、扁蟲毒素(crotocin)、杆孢菌素A(roridin A)、葡萄穗黴毒素H(satratoxin H)、雙乙酸基草鐮刀菌醇(diacetoxyscirpenol)、HT-2毒素或T-2毒素;黃麴黴毒素,諸如黃麴黴毒素B1、B2、G1或G2;伏馬毒素,諸如伏馬毒素B1、B2、B3或B4;多肽黴菌毒素,諸如白僵菌素或恩鐮孢菌素;玉米赤黴烯酮;桔黴素;展青黴素;麥角生物鹼,諸如麥角胺)和/或一種或多種植物源-和/或細菌源-毒素(例如內毒素等)的毒性的一種或多種其它多肽,尤其,所述一種或多種其它多肽能夠去除一種或多種其它黴菌毒素和/或一種或多種植物源-和/或細菌源-毒素,例如,伏馬毒素酯酶(例如,如WO 2016/134387 A1所公開的)和/或玉米赤黴烯酮內酯酶(例如,如WO 2020/025580 A1所公開的)和/或麥角肽水解酶(例如,如WO 2014/056006 A1所公開的); (iii)一種或多種有機吸附劑(例如,活的、滅活的、凍幹的、休眠的和/或死的完整酵母,或者酵母衍生產品諸如酵母細胞壁,或者酵母寡聚體諸如甘露聚糖)和/或一種或多種無機吸附劑(例如,矽藻土和/或粘土礦物諸如高嶺土或高嶺石,蒙脫石諸如蒙脫土、伊利石或綠泥石;尤其,膨潤土); (iv)能夠去除一種或多種其它黴菌毒素(例如,單端孢真菌毒素諸如脫氧雪腐鐮刀菌烯醇、瓜萎鐮菌醇、新茄病鐮刀菌烯醇、毛黴素、扁蟲毒素、杆孢菌素A、葡萄穗黴毒素H、雙乙酸基草鐮刀菌醇、HT-2毒素或T-2毒素;黃麴黴毒素,諸如黃麴黴毒素B1、B2、G1或G2;伏馬毒素,諸如伏馬毒素B1、B2、B3或B4;多肽黴菌毒素,諸如白僵菌素或恩鐮孢菌素;玉米赤黴烯酮;桔黴素;展青黴素;麥角生物鹼,諸如麥角胺)和/或一種或多種植物源-和/或細菌源-毒素(例如內毒素等)的毒性的一種或多種活的、滅活的、凍幹的和/或休眠的微生物,尤其,所述微生物選自如下構成的組:毛孢子菌屬和Apiotrichum屬(例如,如WO 03/053161 A1公開的)和紅蝽菌科(例如,如EP 3 501 526 A1公開的); (v)一種或多種植物產品(例如,海藻,較佳海藻粉(seaweed meal);和/或,藻類,較佳海藻粉(algae meal);和/或,薊,較佳薊籽;和/或,甘草製劑,較佳甘草粉和/或甘草提取物,例如,如WO 2018/121881 A1所公開); (vi)一種或多種調味化合物(例如,植物提取物,例如來自牛至、百里香、冬青、香菜、墨角蘭、薄荷、胡椒薄荷、茴香、柑橘、檸檬、小茴香、八角茴香、丁香、肉桂和/或大蒜;和/或,精油,諸如D-檸檬烯、γ-萜烯、對傘花烴(p-cymene)、2-蒈烯、氧化芳樟醇、異薄荷酮(isomenthone)、樟腦、芳樟醇、松油烯-4-醇、2-異丙基-1-甲氧基-4-甲苯、L-薄荷醇、乙胺、α-松油醇、β-石竹烯、D-香芹酮、水楊酸甲酯、α-石竹烯、薰衣草乙酸酯、氧化石竹烯、丁香酚百里香酚和/或香芹酚); (vii)一種或多種維生素(例如,維生素A、D、E、K、C、B1、B2、B3、B4、B5、B6、B7、B8、B9和/或B12;尤其是維生素E)。 In some other embodiments, the compositions or kits of the invention further comprise one or more of the following: (i) capable of removing OTA and/or at least one OTA derivative (eg, Ochratoxin B and/or Ochratoxin C) ) toxicity of one or more other polypeptides, further preferably, the one or more other polypeptides belong to the M20 peptidase aminoamylase 1-like protein 2-like aminohydrolase subfamily (for example, M20 peptidase ACY1L2 amino The hydrolase subfamily, for example, according to the conserved domain database (eg https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05672) identifier is cd05672, and/or, has aminopeptidase activity (eg EC 3.4.11.10), and/or, including carboxypeptidase activity (eg carboxypeptidase A and/or B activity, eg with EC 3.4.17.1 and/or EC 3.4.17.2, respectively), and /or, thermolysin activity (eg with EC 3.4.24.27); (ii) capable of removing one or more mycotoxins (eg, ZEN and/or trichothecenes such as deoxynivalenol) ), nivalenol, neosolaniol, trichotecin, crotocin, roridin A, staphylocin H (satratoxin H), diacetoxyscirpenol, HT-2 toxin or T-2 toxin; aflatoxins such as aflatoxins B1, B2, G1 or G2; fumonisins such as Fumonisins B1, B2, B3 or B4; polypeptide mycotoxins such as beauvericin or enfusaricin; zearalenone; citrin; patulin; ergot alkaloids such as ergotamine) and/or one or more other polypeptides for the toxicity of one or more plant- and/or bacterial-derived toxins (eg endotoxins, etc.), in particular, the one or more other polypeptides capable of removing one or more other mycotoxins and/or or one or more plant- and/or bacterial-derived toxins, eg, fumonisin esterase (eg, as disclosed in WO 2016/134387 A1) and/or zearalenone lactonase (eg, as disclosed in WO 2016/134387 A1) WO 2020/025580 A1) and/or ergopeptidase (e.g. as disclosed in WO 2014/056006 A1); (iii) one or more organic adsorbents (e.g. live, inactivated, Lyophilized, dormant and/or dead whole yeast, or yeast-derived products such as yeast cell walls, or yeast oligomers such as mannan) and/or one or more inorganic adsorbents (eg, diatomaceous earth and/or Clay minerals such as kaolin or kaolinite , montmorillonite such as montmorillonite, illite or chlorite; in particular, bentonite); (iv) capable of removing one or more other mycotoxins (eg, trichothecene mycotoxins such as deoxynivalenol, citrullus Physalisol, Neosolanisol, Mucormycin, Flatworm Toxin, Bacillus A, Staphylococcus H, Diacetoxyfenol, HT-2 Toxin or T-2 Toxin ; aflatoxins, such as aflatoxins B1, B2, G1 or G2; fumonisins, such as fumonisins B1, B2, B3 or B4; polypeptide mycotoxins, such as beauverin or enfusarium ; zearalenone; citrinin; patulin; ergot alkaloids, such as ergotamine) and/or one of the toxicity of one or more plant- and/or bacterial-derived toxins (eg, endotoxins, etc.) or a plurality of live, inactivated, lyophilized and/or dormant microorganisms, in particular selected from the group consisting of Trichosporon and Apiotrichum (eg as disclosed in WO 03/053161 A1) and Rhododendron (for example, as disclosed in EP 3 501 526 A1); (v) one or more plant products (for example, seaweed, preferably seaweed meal); and/or, algae, preferably seaweed meal (algae meal); and/or, thistle, preferably thistle seed; and/or, licorice preparation, preferably licorice powder and/or licorice extract, for example, as disclosed in WO 2018/121881 A1); (vi) a or more flavoring compounds (e.g., plant extracts such as from oregano, thyme, wintergreen, coriander, marjoram, peppermint, peppermint, fennel, citrus, lemon, cumin, star anise, cloves, cinnamon, and/or garlic and/or, essential oils such as D-limonene, gamma-terpenes, p-cymene, 2-carene, linalool oxide, isomenthone, camphor, linalool, Terpinen-4-ol, 2-isopropyl-1-methoxy-4-toluene, L-menthol, ethylamine, alpha-terpineol, beta-caryophyllene, D-carvone, water (vii) one or more vitamins (e.g., vitamins A, D, E, K, C, B1, B2, B3, B4, B5, B6, B7, B8, B9 and/or B12; especially vitamin E).
在特別的實施方案中,本發明的組合物或試劑盒還包括如下的一種或多種:膨潤土、伏馬毒素酯酶和/或玉米赤黴烯酮內酯酶,能夠去除一種或多種黴菌毒素的毒性的紅蝽菌科微生物(例如,選自紅蝽菌科的微生物,例如https://lpsn.dsmz.de/family/coriobacteriaceae)、矽藻土、酵母(尤其是滅活酵母)、海藻粉、薊籽、和一種或多種調味化合物。In particular embodiments, the compositions or kits of the present invention further comprise one or more of the following: bentonite, fumonisin esterase and/or zearalenone lactonase, capable of removing one or more mycotoxins Toxic micro-organisms of the Coriobacteriaceae family (for example, microorganisms selected from the Coriobacteriaceae family, e.g. https://lpsn.dsmz.de/family/coriobacteriaceae), diatomaceous earth, yeast (especially inactivated yeast), seaweed flour , thistle seeds, and one or more flavoring compounds.
在一些其它實施方案中,本發明的組合物(例如,如下表2列出的典型組合物1-24)或試劑盒(對應於下表2列出的典型組合物1-24)包括一種或多種(例如,除根據本發明的至少一種多肽之外)的其它組分。這樣的其它典型組合物或試劑盒在下表2中明確公開,其描述了本發明的實施方案。In some other embodiments, a composition (eg, typical compositions 1-24 set forth in Table 2 below) or kits (corresponding to typical compositions 1-24 set forth in Table 2 below) of the invention comprise one or Various other components (eg, in addition to at least one polypeptide according to the invention). Such other exemplary compositions or kits are specifically disclosed in Table 2 below, which describes embodiments of the present invention.
表2.本發明的包括一種或多種其它組分的典型組合物或試劑盒。
在其它實施方案中,本發明的變體、親代α/β水解酶、多核苷酸、核酸構建體、表現載體、重組宿主細胞、轉基因植物、轉基因種子、轉基因花粉粒、食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物和/或其混合物、組合物和/或試劑盒,適合用作藥物和/或用於治療中,較佳地,在疾病的預防或治療中使用,進一步較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%的序列同一性。In other embodiments, the variant, parental alpha/beta hydrolase, polynucleotide, nucleic acid construct, expression vector, recombinant host cell, transgenic plant, transgenic seed, transgenic pollen grain, food product, intermediate food product of the invention; Forage, intermediate forage; feed, intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); antidote, intermediate Antidote; nutritional supplement, intermediate nutritional supplement; prebiotic, intermediate prebiotic, silage inoculum; antidote; veterinary composition; pharmaceutical composition and/or mixtures thereof, compositions and/or kits, Suitable for use as a medicine and/or in treatment, preferably, in the prevention or treatment of diseases, further preferably, the parent α/β hydrolase and the polypeptide of SEQ ID NO: 1 have at least 95 % sequence identity.
在其它實施方案中,本發明的變體、親代α/β水解酶、多核苷酸、核酸構建體、表現載體、重組宿主細胞、轉基因植物、轉基因種子、轉基因花粉粒、食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物和/或其混合物、組合物和/或試劑盒,適合用於預防和/或治療黴菌中毒,較佳地,適合用於預防和/或治療玉米赤黴烯酮或其衍生物引起的激素紊亂。In other embodiments, the variant, parental alpha/beta hydrolase, polynucleotide, nucleic acid construct, expression vector, recombinant host cell, transgenic plant, transgenic seed, transgenic pollen grain, food product, intermediate food product of the invention; Forage, intermediate forage; feed, intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); antidote, intermediate Antidote; nutritional supplement, intermediate nutritional supplement; prebiotic, intermediate prebiotic, silage inoculum; antidote; veterinary composition; pharmaceutical composition and/or mixtures thereof, compositions and/or kits, It is suitable for preventing and/or treating fungal poisoning, preferably, it is suitable for preventing and/or treating hormonal disorders caused by zearalenone or its derivatives.
在其它實施方案中,本發明涉及本發明的變體、親代α/β水解酶、多核苷酸、核酸構建體、表現載體、重組宿主細胞、轉基因植物、轉基因種子、轉基因花粉粒、食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物和/或其混合物用於或用作如下一種或多種:(i) 玉米赤黴烯酮和/或其衍生物的降解;(ii) 食物、食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物;(iii) 如下一種或多種的製造/生產:食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物和/或其混合物;(iv) 青儲飼料、沼氣、生物乙醇或糖的製造/生產,較佳由甘蔗或甜菜製造/生產;(v) 黴菌中毒的預防和/或治療。In other embodiments, the present invention relates to variants, parental alpha/beta hydrolases, polynucleotides, nucleic acid constructs, expression vectors, recombinant host cells, transgenic plants, transgenic seeds, transgenic pollen grains, food products, Intermediate food; forage, intermediate forage; feed, intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); detoxification Agents, Intermediate Antidotes; Nutritional Supplements, Intermediate Nutritional Supplements; Prebiotics, Intermediate Prebiotics, Silage Inoculants; Antidote; Veterinary Compositions; Pharmaceutical Compositions and/or mixtures thereof for use or as One or more of: (i) degradation of zearalenone and/or its derivatives; (ii) food, food, intermediate food; forage, intermediate forage; feed, intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); antidote, intermediate antidote; nutritional supplements, intermediate nutritional supplements; prebiotics, intermediate prebiotics, Silage inoculum; antidote; veterinary composition; pharmaceutical composition; (iii) manufacture/production of one or more of the following: food, intermediate food; forage, intermediate forage; feed, intermediate feed; additives (preferably , food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); antidote, intermediate antidote; nutritional supplements, intermediate nutritional supplements; prebiotics, Intermediate prebiotics, silage inoculants; antidote; veterinary compositions; pharmaceutical compositions and/or mixtures thereof; (iv) manufacture/production of silage, biogas, bioethanol or sugar, preferably from sugar cane or Sugar beet manufacturing/production; (v) prevention and/or treatment of mold poisoning.
在其它實施方案中,本發明提供了降解玉米赤黴烯酮和/或其衍生物的方法,包括:(a) 提供如下的一種或多種:(i) 本發明的變體和/或親代α/β水解酶,較佳地,所述親代α/β水解酶與SEQ ID NO: 1的多肽具有至少95%的序列同一性;(ii) 本發明的多核苷酸;(iii) 本發明的核酸構建體;(iv) 本發明的表現載體;(v) 本發明的重組宿主細胞;(vi) 本發明的轉基因植物、轉基因種子和/或轉基因花粉粒;(vii) 本發明的食品、中間食品;草料、中間草料;飼料、中間飼料;添加劑(較佳地,食品添加劑、草料添加劑或飼料添加劑)、中間添加劑(較佳地,食品中間添加劑、草料中間添加劑或飼料中間添加劑);解毒劑、中間解毒劑;營養補充劑、中間營養補充劑;益生元、中間益生元、青儲飼料接種菌;解毒藥;獸用組合物;藥物組合物和/或其混合物;和/或(vii) 本發明的組合物或試劑盒;(b)使來自(a)的一種或多種物質接觸玉米赤黴烯酮和/或其衍生物(例如,形成酶-底物混合物)。In other embodiments, the present invention provides methods of degrading zearalenone and/or derivatives thereof, comprising: (a) providing one or more of: (i) a variant and/or parent of the present invention α/β hydrolase, preferably, the parent α/β hydrolase has at least 95% sequence identity with the polypeptide of SEQ ID NO: 1; (ii) the polynucleotide of the present invention; (iii) the present Nucleic acid constructs of the invention; (iv) expression vectors of the invention; (v) recombinant host cells of the invention; (vi) transgenic plants, transgenic seeds and/or transgenic pollen grains of the invention; (vii) food products of the invention , intermediate food; forage, intermediate forage; feed, intermediate feed; additives (preferably, food additives, forage additives or feed additives), intermediate additives (preferably, food intermediate additives, forage intermediate additives or feed intermediate additives); Antidote, intermediate antidote; nutritional supplement, intermediate nutritional supplement; prebiotic, intermediate prebiotic, silage inoculum; antidote; veterinary composition; pharmaceutical composition and/or mixtures thereof; and/or ( vii) a composition or kit of the invention; (b) contacting one or more substances from (a) with zearalenone and/or a derivative thereof (eg, to form an enzyme-substrate mixture).
應當理解的是,本發明不限於本文描述的特定方法、過程和試劑等,其可以改變。本文使用的專業術語目的僅在於描述特定的實施方案,並不旨在限制本發明的保護範圍,本發明的保護範圍僅由申請專利範圍界定。It is to be understood that this invention is not limited to the particular methods, procedures, reagents, etc. described herein, which may vary. The technical terms used herein are only intended to describe specific embodiments, and are not intended to limit the protection scope of the present invention, which is only defined by the scope of the patent application.
本說明書全文所引用的出版物和專利(包括所有專利、專利申請、科技出版物、製造商說明書、使用說明等),不管是在上文中還是在後面,都通過引用將其整體合併入本文中。本文中的沒有內容被解釋為承認本發明由於在先發明而無權提前披露。在一定程度上,通過引用包括的材料與本說明書存在矛盾或不一致,本說明書將取代任何此類材料。Publications and patents (including all patents, patent applications, scientific publications, manufacturer's instructions, instructions for use, etc.) cited throughout this specification, whether above or below, are hereby incorporated by reference in their entirety . Nothing herein is to be construed as an admission that the present invention is not entitled to prior disclosure by virtue of prior invention. To the extent that material included by reference is inconsistent or inconsistent with this specification, this specification supersedes any such material.
本發明的特徵還在於如下項:
1. 一種親代α/β水解酶的變體,所述變體包括對應於如下位置的一個或多個位置處的置換:SEQ ID NO: 1(較佳使用SEQ ID NO: 1的編號)167, 168, 174, 218, 155, 175, 179, 182, 183, 186, 187, 268, 306, 10, 17, 28, 39, 47, 50, 57, 58, 59, 63, 65, 69, 126, 139, 225, 230, 245, 251, 281, 287, 289, 293和304,其中所述變體具有α/β水解酶活性(例如玉米赤黴烯酮水解酶),並且,其中所述變體是與SEQ ID NO: 1的多肽具有至少71%(較佳:至少72%,至少73%,至少74%,至少75%,至少76%,至少77%,至少78%,至少79%,至少80%,至少81%,至少82%,至少83%,至少84%,至少85%,至少86%,至少87%,至少88%,至少89%,至少90%,至少91%,至少92%,至少93%,至少94%,至少95%,至少95.5%,至少96%,至少96.5%,至少97%,至少97.5%,至少98%,至少98.5%,至少99%, 或至少99.5%)但小於100%序列同一性的多肽,較佳地,所述變體具有水解酶EC: 3.1.1.-活性。
2. 根據前述任一項所述的變體,其中所述變體具有如下一種或多種特性:
i) 相對於親代α/β水解酶的改進的性質,其中所述改進的性質包括提高的溫度穩定性,較佳是相比於SEQ ID NO: 1的提高的溫度穩定性;
ii) 所述變體能夠四聚體化,較佳具有四聚體四級結構,進一步較佳地,所述四聚體化是同源四聚體化;
iii) 熔點(Tm)大於50℃,較佳地,所述Tm的範圍是大約51℃至大約70℃;
iv) 能夠降解玉米赤黴烯酮和/或其衍生物;
v) 包括與選自如下的胺基酸序列具有至少80%(較佳至少83%、更較佳至少90%)序列同一性的至少一個(較佳至少兩個、更較佳至少三個、最較佳至少四個)胺基酸基序:
a) QVDLGEX
1X
2MN (SEQ ID NO: 36),其中X
1是V或I,較佳V,並且,其中X
2是V或T,較佳V;
b) EYDPEWX
3RX
4FX
5EGTV (SEQ ID NO: 37),其中X
3是G或A,較佳A,並且,其中X
4是A或V,較佳A,並且,其中X
5是F或Y;
c) MLX
6QVKTPX
7LX
8THH (SEQ ID NO: 38),其中X
6是S或G,較佳S,並且,其中X
7是I或V,較佳I,並且,其中X
8是I或L,較佳I;
d) PAX
9LLX
10PEQTGSWWSYEX
11X
12X
13GLLX
14EX
15FHVX
16AVDX
17RGQGRSX
18WTPX
19RYSLDNFGNDLVRFIX
20LVX
21KRPVX
22VX
23GNSSGGX
24LAAWLSAYX
25MPGQX
26RX
27X
28LCEDX
29X
30FFASELVPAX
31GHSVX
32QX
33AGPX
34FELX
35R (SEQ ID NO: 39)其中X
9是V或L,較佳L,並且,其中X
10是L或I,較佳L,並且,其中X
11是P或E,較佳P,並且,其中X
12是V或A,較佳V,並且,其中X
13是I或M,較佳I,並且,其中X
14是A或S,較佳A,並且,其中X
15是S、N或H,較佳S,並且,其中X
16是F或Y,較佳F,並且,其中X
17是I或L,較佳I,並且,其中X
18是T或S,較佳T,並且,其中X
19是K或R,較佳K,並且,其中X
20是S、A或N,較佳S,並且,其中X
21是V或I,較佳V,並且,其中X
22是I或V,較佳I,並且,其中X
23是S或A,較佳S,並且,其中X
24是V或L,較佳V,並且,其中X
25是A或S,較佳A,並且,其中X
26是I或L,較佳I,並且,其中X
27是A或G,較佳A,並且,其中X
28是A或V,較佳A,並且,其中X
29是T、A或P,較佳T,並且,其中X
30是P或A,較佳P,並且,其中X
31是Y或H,較佳H,並且,其中X
32是L或R,較佳R,並且,其中X
33是A或G,較佳A,並且,其中X
34是A或V,較佳A,並且,其中X
35是Y或F,較佳Y。
3. 根據前述任一項所述的變體,其中置換的數目是1-30,較佳1-20和1-10,諸如1, 2, 3, 4, 5, 6, 7, 8, 9或10個置換。
4. 根據前述任一項所述的變體,其中所述變體包括對應於SEQ ID NO: 1如下位置的一個或多個位置處的置換(例如,下表的各行代表根據本發明的特徵的單個典型組合,例如,特定實施方案的變體):
本發明通過以下實施例來進一步說明,但不限於實施例或實施例的任何特定實施方式。The present invention is further illustrated by the following examples, but is not limited to the examples or any particular implementation of the examples.
本發明的實施例Embodiments of the present invention
實施例Example 11 :編碼玉米赤黴烯酮: encodes zearalenone -- 切割多肽的多核苷酸的修飾、克隆、表現和玉米赤黴烯酮Modification, cloning, expression and zearalenone of cleavage polypeptide polynucleotides -- 切割多肽的純化Purification of cleaved polypeptides
按照核苷酸序列合成完整的玉米赤黴烯酮-切割多肽基因(包括多肽C-末端融合的6x組氨酸標簽),隨後由上市公司(例如Twist Bioscience)將其整合入表現載體。The complete zearalenone-cleavage polypeptide gene (including a 6x histidine tag fused to the C-terminus of the polypeptide) was synthesized according to the nucleotide sequence and then incorporated into an expression vector by a public company (eg Twist Bioscience).
用包含完整的玉米赤黴烯酮-切割多肽基因的表現載體轉化感受態 E. coliBL21 (DE3)。通過表現載體的抗生素耐藥性來篩選轉化子。任何其它合適的宿主細胞也都可以用於本工作中。 Competent E. coli BL21 (DE3) was transformed with an expression vector containing the complete zearalenone-cleavage polypeptide gene. Transformants were screened for antibiotic resistance of the expression vector. Any other suitable host cell can also be used in this work.
為了製備感受態 E. coliBL21 (DE3),將細胞接種於LB培養基(例如,Luria/Miller, 顆粒狀, 6673, Carl Roth GmbH+CoKG, 25.0 g/L)並在37.0℃持續震盪過夜生長。在LB培養基中接種過夜培養物作為主要培養物,在37.0℃持續震盪生長直至OD 600是0.65。在收穫之前15.0分鐘,將主要培養物冷卻至4.0℃,只要有可能或另有說明,在隨後的所有步驟中,在4.0℃保存細胞。在4.0℃,2000.0×g進行10分鐘,收穫細胞。按照每100.0ml主要培養物使用5.0ml TSS緩衝液(LB培養基,10.0 %聚乙二醇-6000, 5.0 %二甲亞碸, 20.0 mM氯化鎂)重懸細胞顆粒。 To prepare competent E. coli BL21 (DE3), cells are seeded in LB medium (eg, Luria/Miller, pellet, 6673, Carl Roth GmbH+CoKG, 25.0 g/L) and grown overnight at 37.0°C with constant shaking. An overnight culture was inoculated in LB medium as the main culture and grown at 37.0°C with continued shaking until the OD600 was 0.65. 15.0 min prior to harvesting, the main culture was cooled to 4.0°C, and cells were stored at 4.0°C in all subsequent steps whenever possible or otherwise indicated. Cells were harvested at 4.0°C, 2000.0 x g for 10 minutes. The cell pellet was resuspended using 5.0 ml of TSS buffer (LB medium, 10.0% polyethylene glycol-6000, 5.0% dimethylsulfoxide, 20.0 mM magnesium chloride) per 100.0 ml of primary culture.
對於感受態 E. coliBL21 (DE3)的轉化,使用5×KCM緩衝液(500.0 mM氯化鉀, 150.0 mM氯化鈣, 250.0 mM氯化鎂)1:1.25稀釋感受態細胞溶液。向50.0 µl製備的細胞溶液提供5.0 µl包含完整的玉米赤黴烯酮-切割多肽基因的表現載體,4.0℃孵育10.0分鐘。42.0℃熱擊1.5分鐘,隨後在4.0℃孵育1.0分鐘。37.0℃,細胞在1.0 ml LB培養基中再生1.5小時。將100.0 µl細胞接種於具有抗生素(例如,卡那黴素50.0 µg/ml)的900.0 µl LB培養基中,37.0℃持續震盪過夜培養。 For transformation of competent E. coli BL21 (DE3), use 5x KCM buffer (500.0 mM KCl, 150.0 mM CaCl, 250.0 mM MgCl) to dilute the competent cell solution 1:1.25. Provide 5.0 µl of the expression vector containing the intact zearalenone-cleavage polypeptide gene to 50.0 µl of the prepared cell solution and incubate at 4.0°C for 10.0 minutes. Heat shock at 42.0°C for 1.5 minutes, followed by incubation at 4.0°C for 1.0 minutes. Cells were regenerated in 1.0 ml LB medium for 1.5 hours at 37.0°C. Inoculate 100.0 µl of cells in 900.0 µl of LB medium with antibiotics (eg, kanamycin 50.0 µg/ml) and incubate overnight at 37.0°C with constant shaking.
使用市售自誘導培養基由陽性轉化子細胞內表現完整的玉米赤黴烯酮-切割多肽基因。Intact zearalenone-cleaved polypeptide genes were expressed intracellularly from positive transformants using a commercially available autoinduction medium.
將500.0 µl過夜培養物接種於盛裝在50.0 ml反應管中的9.5 ml含有抗生素(例如,卡那黴素50.0 µg/ml)的自誘導培養基(例如Novagen Overnight Express TMInstant TB Medium, 71491, Sigma-Aldrich Handels GmbH)中,用密封膜(例如Breathe.Easier密封膜, Z763624, Sigma-Aldrich Handels GmbH)覆蓋,以實現高氣體交換率。37.0℃持續震盪孵育表現培養物24.0小時。室溫,2000.0×g進行10分鐘,收穫細胞。 Inoculate 500.0 µl of the overnight culture in 9.5 ml of autoinduction medium (eg Novagen Overnight Express TM Instant TB Medium, 71491, Sigma- Aldrich Handels GmbH), covered with a sealing film (eg Breathe. Easier sealing film, Z763624, Sigma-Aldrich Handels GmbH) to achieve high gas exchange rates. Express cultures were incubated for 24.0 hours at 37.0°C with constant shaking. Cells were harvested at 2000.0 x g for 10 minutes at room temperature.
通過超聲處理來裂解表現步驟收穫的細胞。利用6x組氨酸標簽親和純化從清除的裂解物獲得玉米赤黴烯酮-切割多肽。通過SDS-PAGE分析來確認分子量和純度。通過NanoDrop TM分析來測定玉米赤黴烯酮-切割多肽的濃度。 Cells harvested from the expression step were lysed by sonication. Zearalenone-cleaved polypeptides were obtained from cleared lysates using 6x histidine-tagged affinity purification. Molecular weight and purity were confirmed by SDS-PAGE analysis. The concentration of zearalenone-cleavage polypeptide was determined by NanoDrop ™ analysis.
在4.0℃,將收穫的細胞重懸於2.0 ml結合緩衝液(20.0 mM磷酸鈉, 500.0 mM氯化鈉, 60.0 mM咪唑, pH 7.4)。在超聲波儀上處理懸浮液直至細胞在4.0℃完全裂解(例如,Q700-220 + Q4579, 振幅50.0 – 處理時間8.0分鐘 – 脈衝 20.0秒 – 暫停40.0 秒, QSonica L.L.C)。Resuspend the harvested cells in 2.0 ml of binding buffer (20.0 mM sodium phosphate, 500.0 mM sodium chloride, 60.0 mM imidazole, pH 7.4) at 4.0 °C. Treat the suspension on a sonicator until cells are completely lysed at 4.0 °C (eg, Q700-220 + Q4579, amplitude 50.0 - treatment time 8.0 min - pulse 20.0 sec - pause 40.0 sec, Qonica L.L.C).
4.0℃,2000.0×g離心15分鐘來使裂解物澄清。按照製造商規程,將1.4ml上清液在HIS-Spin trap柱(例如,HIS-Spin Trap, 28-4013-53, GE Healthcare GmbH)上進行純化。玉米赤黴烯酮-切割多肽在400.0 µl洗脫緩衝液(20.0 mM磷酸鈉, 500.0 mM氯化鈉, 500.0 mM咪唑, pH 7.4)中進行洗脫,該製劑用於研究酶學特性。Lysates were clarified by centrifugation at 2000.0 x g for 15 minutes at 4.0°C. 1.4 ml of the supernatant was purified on a HIS-Spin trap column (eg, HIS-Spin Trap, 28-4013-53, GE Healthcare GmbH) following the manufacturer's protocol. Zearalenone-cleavage peptides were eluted in 400.0 µl of elution buffer (20.0 mM sodium phosphate, 500.0 mM sodium chloride, 500.0 mM imidazole, pH 7.4), which was used to study enzymatic properties.
為了確認純化的玉米赤黴烯酮-切割多肽的分子量和純度,洗脫物的稀釋液中加入加樣染料(例如,2×加樣染料: 0.125 M三羥甲基氨基甲烷/鹽酸pH 6.8, 20.0 %甘油, 4.0 %十二烷基硫酸鈉, 0.02 %溴酚藍, 2 % β-巰基乙醇)、煮沸並在12.0%聚丙烯醯胺凝膠(例如,Mini-PROTEAN® Tetra Cell System, 1658004EDU + 12% Mini-PROTEAN® TGX TMPrecast Protein Gels, 4561043EDU, Bio-Rad Laboratories GmbH)(10×運行緩衝液: 0.125 M三羥甲基氨基甲烷, 1.25 M甘氨酸, 0.5 %十二烷基硫酸鈉, 200 V, 40 分鐘)上分離。肽的條帶通過考馬斯亮藍染色而可視化並與標準肽標記物進行比較。 To confirm the molecular weight and purity of the purified zearalenone-cleavage polypeptide, add loading dye to dilutions of the eluate (e.g., 2x loading dye: 0.125 M Tris/HCl pH 6.8, 20.0% glycerol, 4.0% sodium lauryl sulfate, 0.02% bromophenol blue, 2% β-mercaptoethanol), boiled and gelatinized in 12.0% polyacrylamide (eg, Mini-PROTEAN® Tetra Cell System, 1658004EDU + 12% Mini-PROTEAN® TGX TM Precast Protein Gels, 4561043EDU, Bio-Rad Laboratories GmbH) (10× Running Buffer: 0.125 M Tris, 1.25 M Glycine, 0.5 % Sodium Lauryl Sulfate, 200 V, 40 minutes). Bands of peptides were visualized by Coomassie staining and compared to standard peptide markers.
為了測定純化的玉米赤黴烯酮-切割多肽的濃度,檢測280.0 nm處的吸光度(例如,NanoDrop TMOne, ND-ONE-W, Thermo Fisher Scientific Inc.),按照Lambert-Beer法則計算濃度。 To determine the concentration of purified zearalenone-cleavage polypeptide, measure the absorbance at 280.0 nm (eg, NanoDrop ™ One, ND-ONE-W, Thermo Fisher Scientific Inc.) and calculate the concentration according to the Lambert-Beer rule.
酶低聚度(Enzyme oligomerization degree ( degree of enzyme oligomerisationdegree of enzyme oligomerisation )的分析() analysis ( Blue-Native-PAGE – BN-PAGEBlue-Native-PAGE – BN-PAGE ))
通過Blue-Native-PAGE對單個純化的玉米赤黴烯酮-切割多肽之間的天然分子量(寡聚構象)進行比較。洗脫物採用非變性加樣染料(例如,2×加樣染料:0.126 M三羥甲基氨基甲烷/鹽酸 pH 6.8,20.0 % 甘油, 4.0%考馬斯藍G-250)稀釋,並在自然條件下在4-15%聚丙烯醯胺凝膠上分離(例如,Mini-PROTEAN® Tetra Cell System, 1658004EDU + 4-15 % Mini-PROTEAN® TGX TMPrecast Protein Gels, 4561083EDU, Bio-Rad Laboratories GmbH)(5×陽極緩衝液: 0.125 M三羥甲基氨基甲烷, 0.960 M甘氨酸, 1×陰極緩衝液: 陽極緩衝液+ 0.02 % 考馬斯藍G250; 200 V, 40分鐘)。通過考馬斯染色可以看見肽的條帶。採用尺寸排除色譜法、SEC-MALS或X-射線晶體衍射來測定選擇的玉米赤黴烯酮-切割多肽的寡聚狀態。同源二聚體(例如SEQ ID NO. 1)在BN-PAGE凝膠基質上遷移得較快,而同源四聚體(例如SEQ ID NO. 2-35)以較高程度保留在凝膠基質。依據同源二聚體肽和同源四聚體肽來確定玉米赤黴烯酮-切割多肽的寡聚構象。 Comparison of native molecular weights (oligomeric conformations) between individual purified zearalenone-cleavage polypeptides by Blue-Native-PAGE. The eluate was diluted with a native loading dye (e.g., 2x loading dye: 0.126 M Tris/HCl pH 6.8, 20.0 % glycerol, 4.0% Coomassie Blue G-250) and washed in natural Separation on 4-15% polyacrylamide gels under conditions (e.g. Mini-PROTEAN® Tetra Cell System, 1658004EDU + 4-15 % Mini-PROTEAN® TGX ™ Precast Protein Gels, 4561083EDU, Bio-Rad Laboratories GmbH) (5x Anode Buffer: 0.125 M Tris, 0.960 M Glycine, 1x Cathode Buffer: Anode Buffer + 0.02 % Coomassie Blue G250; 200 V, 40 min). Peptide bands were visualized by Coomassie staining. The oligomeric state of selected zearalenone-cleaved polypeptides was determined using size exclusion chromatography, SEC-MALS or X-ray crystallography. Homodimers (eg SEQ ID NO. 1) migrate faster on the BN-PAGE gel matrix, while homotetramers (eg SEQ ID NO. 2-35) are retained on the gel to a higher degree matrix. The oligomeric conformations of the zearalenone-cleavage polypeptides were determined in terms of homodimeric and homotetrameric peptides.
玉米赤黴烯酮 - 切割多肽熔點( Tm )的測定:使用熱位移分析,基於蛋白質變性過程中染料SYPRO Orange的熒光性,測定純化的玉米赤黴烯酮-切割多肽的熔點。雖然水會淬滅它的熒光,但是,與變性蛋白質上未折疊的疏水錶面相結合會引起熒光增加。 Determination of Zearalenone -Cleaved Polypeptide Melting Points ( Tm ): The melting point of purified zearalenone-cleaved polypeptides was determined using thermal shift analysis based on the fluorescence of the dye SYPRO Orange during protein denaturation. While water quenches its fluorescence, binding to unfolded hydrophobic surfaces on denatured proteins causes fluorescence to increase.
在pH7.5的Teorell Stenhagen緩衝液(Östling and Virtama, Acta Physiologica Scandinavica, 1946, 11:4, 289-293)中將純化的純化的玉米赤黴烯酮-切割多肽稀釋至0.2 mg/ml。Sypro Orange 5000×儲備液(Sypro Orange, S5692, Sigma-Aldrich Handels GmbH)1:100稀釋於pH7.5的Teorell Stenhagen緩衝液。在使用適合熒光檢測的透明熱封膜密封的96-孔PCR-板中,15.0 µl稀釋的玉米赤黴烯酮-切割多肽中加入3.0 µl稀釋的Sypro Orange溶液和12.0 µl pH7.5的Teorell Stenhagen緩衝液。採用在20分鐘內20.0℃至95.0℃的線性增加溫度在qPCR-循環儀上測量熔解曲線,每條測量曲線147個測量點(460.0 nm消光,550.0 nm發射)(例如,Mastercycler qPCR ep realplex 2s, 6300000604, Eppendorf AG)。熒光信號拐點處(換言之,熒光信號增加率最高的溫度處)測定熔點。147個測量點的熒光強度相對溫度梯度繪圖。按照兩個隨後測量點的d熒光信號/d溫度,計算每147個測量點的微分。計算的dF/dT最高值的溫度是一階導數的極大值,表示拐點且因此是玉米赤黴烯酮-切割多肽的熔點。The purified purified zearalenone-cleavage polypeptide was diluted to 0.2 mg/ml in Teorell Stenhagen buffer pH 7.5 (Östling and Virtama, Acta Physiologica Scandinavica, 1946, 11:4, 289-293). Sypro Orange 5000X stock solution (Sypro Orange, S5692, Sigma-Aldrich Handels GmbH) was diluted 1:100 in Teorell Stenhagen buffer pH 7.5. In a 96-well PCR-plate sealed with a transparent heat-seal film suitable for fluorescence detection, 15.0 µl of the diluted zearalenone-cleavage peptide was added with 3.0 µl of the diluted Sypro Orange solution and 12.0 µl of Teorell Stenhagen pH 7.5 buffer. Melting curves were measured on a qPCR-cycler using a linearly increasing temperature from 20.0°C to 95.0°C over 20 minutes, with 147 measurement points per measurement curve (460.0 nm extinction, 550.0 nm emission) (e.g. Mastercycler qPCR ep realplex 2s, 6300000604, Eppendorf AG). The melting point is determined at the inflection point of the fluorescence signal (in other words, the temperature at which the rate of increase in the fluorescence signal is highest). Fluorescence intensity plotted against temperature gradient for 147 measurement points. Differentials were calculated for every 147 measurement points as d fluorescence signal/d temperature for two subsequent measurement points. The temperature at which the highest value of dF/dT is calculated is the maximum value of the first derivative, representing the inflection point and thus the melting point of the zearalenone-cleavage polypeptide.
表surface
3.3.
玉米赤黴烯酮Zearalenone
--
切割多肽的熔點(The melting point of the cleaved polypeptide (
TmTm
))
比活力的測定Determination of specific activity
製備玉米赤黴烯酮降解分析緩衝液(118.5 mM NaCl, 8.55 mM 醋酸, 14.9 mM 醋酸鹽, 0.1 mg/ml BSA, pH 5.0, (Jantratid, E., Janssen, N., Reppas, C. & Dressman, J. B. (2008): Dissolution media simulating conditions in the proximal human gastrointestinal tract: An update. Pharmaceutical Research 25 (7): 1663-1576), 含有0.1 mg/ml牛血清白蛋白和0.52 ppm 玉米赤黴烯酮作為底物),在37.0℃預熱,將960µl試樣的分析緩衝液轉移至96深井板的反應管中。用活動蓋密封該板,37.0℃保存在DWP-熱振動篩中直至玉米赤黴烯酮降解分析開始。Prepare Zearalenone Degradation Assay Buffer (118.5 mM NaCl, 8.55 mM acetic acid, 14.9 mM acetate, 0.1 mg/ml BSA, pH 5.0, (Jantratid, E., Janssen, N., Reppas, C. & Dressman) , J. B. (2008): Dissolution media simulating conditions in the proximal human gastrointestinal tract: An update. Pharmaceutical Research 25(7): 1663-1576), containing 0.1 mg/ml bovine serum albumin and 0.52 ppm zearalenone as Substrate), pre-warmed at 37.0°C, and transfer 960 µl of assay buffer to a reaction tube in a 96-deep-well plate. The plate was sealed with a removable lid and stored in a DWP-thermal shaker at 37.0°C until the start of the zearalenone degradation assay.
使用純化的玉米赤黴烯酮-切割多肽通過在樣本緩衝液(Teorell Stenhagen緩衝液pH 7.5, 含有0.1 mg/ml牛血清白蛋白)中稀釋至比最終玉米赤黴烯酮降解實驗中分析的濃度高25倍來製備酶工作液,玉米赤黴烯酮-切割多肽的濃度可在給定條件下有效降解玉米赤黴烯酮。Use purified zearalenone-cleavage polypeptides by diluting in sample buffer (Teorell Stenhagen buffer pH 7.5, containing 0.1 mg/ml bovine serum albumin) to concentrations higher than those analyzed in the final zearalenone degradation experiments 25 times higher to prepare the enzyme working solution, the concentration of zearalenone-cleaving polypeptide can effectively degrade zearalenone under the given conditions.
為了開始玉米赤黴烯酮降解實驗,將40.0 µl酶工作液加入到含有960.0 µl分析緩衝液的試管中,從而在分析反應中實現0.5 ppm的最終ZEN濃度。加入pH 7.5的酶工作液不會改變pH 5.0的玉米赤黴烯酮降解反應。To begin the zearalenone degradation experiment, add 40.0 µl of the enzyme working solution to a tube containing 960.0 µl of assay buffer to achieve a final ZEN concentration of 0.5 ppm in the assay reaction. The addition of pH 7.5 enzyme working solution did not alter the pH 5.0 zearalenone degradation reaction.
在DWP-熱振動篩中在37.0℃持續震盪條件下孵育玉米赤黴烯酮降解反應。玉米赤黴烯酮降解反應開始之後,立即用吸管頭再懸浮混合,將120.0 µl的0.0 h樣本轉移至新的PCR板的管中,用管帽密封。在幾個時間點(例如5.0, 10.0, 20.0, 30.0, 45.0, 60.0, 90.0分鐘)之後從玉米赤黴烯酮降解反應取出額外樣本。一旦從降解反應中取出樣本,就通過在99.0℃在熱塊(thermo-block)(例如,Thermal Shake lite, 460-029, VWR)孵育10.0分鐘來熱滅活該樣本中的玉米赤黴烯酮切割多肽。隨後,對管離心(3.0分鐘,室溫,2500 x g),將90.0 µl上清液轉移至有邊緣的PCR板(例如,twin.tec®PCR板,0030128648, Eppendorf AG),其用熱封膜(例如,熱封膜,0030127838, Eppendof AG)封閉。這些樣本板儲存在4.0℃,直至HPLC-FLD測量。按照Vekiru et al. (Vekiru et al. (2016) ‘Isolation and characterization of enzymatic zearalenone hydrolysis reaction products’ World Mycotoxin Journal 9:353-363)描述的改進的HPLC-FLD方法測量玉米赤黴烯酮濃度。The zearalenone degradation reaction was incubated at 37.0°C with constant shaking in a DWP-thermal shaker. Immediately after the zearalenone degradation reaction begins, resuspend and mix with a pipette tip, transfer 120.0 µl of the 0.0 h sample to a tube on a new PCR plate, and seal with a cap. Additional samples were taken from the zearalenone degradation reaction after several time points (eg, 5.0, 10.0, 20.0, 30.0, 45.0, 60.0, 90.0 min). Once the sample is removed from the degradation reaction, thermally inactivate zearalenone cleavage in the sample by incubating it in a thermo-block (eg, Thermal Shake lite, 460-029, VWR) for 10.0 minutes at 99.0°C peptide. Subsequently, the tubes were centrifuged (3.0 min, room temperature, 2500 x g) and 90.0 µl of the supernatant was transferred to a rimmed PCR plate (eg, twin.tec® PCR plate, 0030128648, Eppendorf AG), which was sealed with a heat-sealed film (for example, heat-sealing film, 0030127838, Eppendof AG) to seal. These sample plates were stored at 4.0°C until HPLC-FLD measurement. Zearalenone concentrations were measured according to a modified HPLC-FLD method described by Vekiru et al. (Vekiru et al. (2016) 'Isolation and characterization of enzymatic zearalenone hydrolysis reaction products' World Mycotoxin Journal 9:353-363).
278.0 nm消光和465.0 nm發射的HPLC-FLD上進行分析。當在40.0℃在Kinetex 5µm EVO C18 100 A 50.0 x 2.1 mm柱(00B-4633-AN, Phenomenex Inc.)上完成分離時,玉米赤黴烯酮的保留時間是1.8分鐘,前述分離採用了如下方法:使用溶劑A(95.0 %乙腈 + 4.9 %水 + 0.1 %甲酸)和溶劑B(5.0 %乙腈+ 94.9 % 水 + 0.1 %甲酸),梯度:0.0-0.5分鐘10 % 相B, 0.5-2.0 分鐘線性增加至50.0 %相B,然後在0.1分鐘內減至10 % 相B,持續進行,總運行時間2.3分鐘。流速設置為1.5 ml/min,進樣體積是5.0 μl。對各種分析採用了類似的採集設置。Analysis was performed on HPLC-FLD with extinction at 278.0 nm and emission at 465.0 nm. The retention time for zearalenone was 1.8 minutes when separated on a Kinetex 5µm EVO C18 100 A 50.0 x 2.1 mm column (00B-4633-AN, Phenomenex Inc.) at 40.0°C using the following method : Using solvent A (95.0 % acetonitrile + 4.9 % water + 0.1 % formic acid) and solvent B (5.0 % acetonitrile + 94.9 % water + 0.1 % formic acid), gradient: 0.0-0.5 min 10 % phase B, 0.5-2.0 min linear Increase to 50.0 % Phase B, then reduce to 10 % Phase B in 0.1 min, continuing for a total run time of 2.3 min. The flow rate was set to 1.5 ml/min and the injection volume was 5.0 μl. Similar acquisition settings were used for the various analyses.
基於玉米赤黴烯酮外標物的校準,對玉米赤黴烯酮進行定量。所取反應樣品的玉米赤黴烯酮濃度(µM)對取樣時間點作圖。線性玉米赤黴烯酮降解隨時間的斜率以酶促反應體積中每分鐘減少的μmol玉米赤黴烯酮計算。考慮到純化的玉米赤黴烯酮-切割多肽的可能的稀釋並將這些合適的稀釋因素包括在計算中,計算以每分鐘每mg純化的酶降解的µmol玉米赤黴烯酮(µmol ZEN/min/mg)表示的酵素比活性(specific enzymatic activity)。Zearalenone was quantified based on the calibration of the zearalenone external standard. The zearalenone concentration (µM) of the reaction samples taken is plotted against the sampling time point. The slope of linear zearalenone degradation over time was calculated as μmol zearalenone decreased per minute in the volume of the enzymatic reaction. Taking into account possible dilutions of purified zearalenone-cleavage polypeptides and including these appropriate dilution factors in the calculation, calculate in µmol zearalenone degraded per minute per mg of purified enzyme (µmol ZEN/min). /mg) expressed the specific enzymatic activity (specific enzymatic activity).
表surface
44
::
pH5.0pH5.0
時的酵素比活性specific enzyme activity
本領域技術人員將容易理解,本發明適於實現所述目的並獲得所述目的和優點以及其中固有的那些目的和優點。此外,對本領域技術人員來說顯而易見的是,在不脫離本發明的範圍和精神的情況下,可以對本文公開的發明進行不同的替換和修改。本文所述的組合物、方法、過程、處理、分子和特定化合物目前是代表某些實施方案,是示例性的,不旨在限制本發明的範圍。對於本領域技術人員來說,在本發明的精神範圍內所包含的變化和其他用途將由申請專利範圍的範圍限定。本說明書中對先前發佈的文件的列出或討論不一定被視為承認該文件是現有技術的一部分或是公知常識。Those skilled in the art will readily appreciate that the present invention is adapted to carry out the objects and obtain the objects and advantages as well as those inherent therein. Furthermore, it will be apparent to those skilled in the art that various substitutions and modifications of the invention disclosed herein can be made without departing from the scope and spirit of the invention. The compositions, methods, processes, treatments, molecules, and specific compounds described herein are presently representative of certain embodiments, are exemplary, and are not intended to limit the scope of the invention. Variations and other uses encompassed within the spirit of the invention to those skilled in the art will be defined by the scope of the claims. The listing or discussion of a previously published document in this specification is not necessarily an admission that the document is part of the state of the art or is common general knowledge.
本文示例性描述的發明可以在沒有任何元素或要素、限制或限定的情況下被合適地實踐,而本發明未在本文中具體披露。因此,例如,術語“包含”、“包括”、“含有”等應擴展性的解讀,而非限制性的。此外,本文中使用的術語和表述已被用作描述術語而非限制術語,並且,使用此類術語和表述時,無意排除所示和描述的特徵或其部分的任何等價物,但是,應當認識到,在所要求保護的發明的範圍內可以進行各種修改。因此,應當理解,儘管已經通過示例性實施方案和可選特徵具體地公開了本發明,但是本領域技術人員可以求助於對本文所體現的發明的修改和變化,並且,這種修改和變化被認為在本發明的範圍內。The invention exemplarily described herein may suitably be practiced without any element or element, limitation or limitation, the invention not specifically disclosed herein. Thus, for example, the terms "comprising," "including," "containing," and the like are to be read in an expansive rather than a restrictive sense. Furthermore, the terms and expressions used herein have been used as terms of description rather than of limitation and, where such terms and expressions are used, are not intended to exclude any equivalents of the features shown and described, or parts thereof, however, it should be recognized that , various modifications can be made within the scope of the claimed invention. Therefore, it should be understood that although the invention has been specifically disclosed by the exemplary embodiments and optional features, those skilled in the art may resort to modifications and variations of the invention embodied herein, and that such modifications and variations are It is considered to be within the scope of the present invention.
本文已經對本發明進行了廣泛地和一般地描述。落入一般性公開內的每種較窄的種類和亞組也構成本發明的部分。這包括對本發明的一般性描述,限制條款或負面限制是從屬中去除任何主題,而不管離體物質在本文中是否進行了明確列舉。所有文獻,包括專利申請和科學出版物,都通過引用整體包括在本文中。The invention has been described broadly and generically herein. Each of the narrower species and subgroups falling within the general disclosure also forms part of the invention. This includes a general description of the invention, with limitations or negative limitations that exclude any subject matter from the derivation, whether or not the ex vivo material is expressly recited herein. All documents, including patent applications and scientific publications, are hereby incorporated by reference in their entirety.
其他實施方案在以下申請專利範圍中。此外,當以馬庫什群組來描述本發明的特徵或方面時,本領域技術人員將意識到,本發明因此還以馬庫什群組的任何單個成員或亞組成員來描述。Other embodiments are within the scope of the following claims. Furthermore, when features or aspects of the invention are described in terms of the Markush group, those skilled in the art will appreciate that the invention is thus also described in terms of any individual member or subgroup of members of the Markush group.
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