RU2314343C2 - METHOD FOR PREPARING L-THREONINE USING MICROORGANISM BELONGING TO Escherichia GENUS WHEREIN dinJ-yafQ OPERON IS INACTIVATED - Google Patents

Abstract

FIELD: biotechnology, microbiology, amino acids.

SUBSTANCE: invention represents a method for preparing L-threonine. Method involves culturing a microorganism belonging to Escherichia genus wherein dinJ-yafQ operon is inactivated in nutrient medium and isolation of accumulated L-threonine. Invention provides preparing L-threonine with high degree of effectiveness.

EFFECT: improved preparing method of L-threonine.

3 cl, 2 dwg, 2 tbl, 11 ex

Description

Technical field

The present invention relates to the microbiological industry, in particular to a method for producing an L-amino acid using a bacterium of the Enterobacteriaceae family, modified in such a way that the expression of the yafQ gene in said bacterium is weakened.

Description of the Related Art

The YafQ and DinJ proteins form a toxin-antitoxin pair, and DinJ (DNA damage inducible protein) is the antitoxin for the YafQ protein (Gerdes, K., J. Bacteriol., 182 (3): 561-72 (2000); Christensen SK et al , Mol. Microbiol., 51 (6); 1705-17 (2004)). It has been shown that under the harsh conditions causing cell growth arrest, the level of YafQ and DinJ proteins increases significantly, as do other toxin-antitoxin pairs (Chang, DE et al, Mol. Microbiol., 45 (2): 289-306 ( 2002)).

But there are currently no reports describing the use of attenuation of yafQ gene expression to produce L-amino acids.

Description of the invention

The objectives of the present invention are to increase the productivity of strains producing L-amino acids and provide a method for producing L-amino acids using these strains.

The above objectives were achieved by establishing the fact that inactivation of the yafQ gene encoding the YafQ toxin can lead to increased production of L-amino acids such as L-threonine, L-lysine, L-cysteine, L-leucine, L-histidine, L -glutamic acid, L-phenylalanine, L-tryptophan, L-proline and L-arginine.

The present invention provides a bacterium of the Enterobacteriaceae family that is capable of increased production of amino acids such as L-threonine, L-lysine, L-cysteine, L-leucine, L-histidine, L-glutamic acid, L-phenylalanine, L-tryptophan, L Proline and L-Arginine.

The aim of the present invention is the provision of bacteria producing L-amino acids of the Enterobacteriaceae family, modified so that the expression of the yafQ gene in the specified bacteria is weakened.

It is also an object of the present invention to provide a bacterium as described above, wherein expression of said yafQ gene is attenuated by inactivation of said yafQ gene.

It is also an object of the present invention to provide a bacterium as described above, wherein expression of said yafQ gene is attenuated by inactivation of the dinJ-yafQ operon.

It is also an object of the present invention to provide the bacteria described above, wherein said bacterium belongs to the genus Escherichia.

It is also an object of the present invention to provide the bacteria described above, wherein said bacterium belongs to the genus Pantoea.

It is also an object of the present invention to provide the bacteria described above, wherein said L-amino acid is selected from the group consisting of an aromatic L-amino acid and a non-aromatic L-amino acid.

It is also an object of the present invention to provide the bacteria described above, wherein the aromatic L-amino acid is selected from the group consisting of L-phenylalanine, L-tyrosine and L-tryptophan.

Another objective of the present invention is the provision of the bacteria described above, while the non-aromatic L-amino acid is selected from the group consisting of L-threonine, L-lysine, L-cysteine, L-methionine, L-leucine, L-isoleucine, L-valine, L-histidine, L-glycine, L-serine, L-alanine, L-asparagine, L-aspartate, L-glutamine, L-glutamic acid, L-proline and L-arginine.

Another objective of the present invention is the provision of a method for producing L-amino acids, which includes:

- growing the above bacteria in a nutrient medium for the purpose of production and accumulation of L-amino acids in a nutrient medium,

- and the allocation of the specified L-amino acids from the culture fluid.

It is also an object of the present invention to provide the method described above, wherein said L-amino acid is selected from the group consisting of an aromatic L-amino acid and a non-aromatic L-amino acid.

It is also an object of the present invention to provide the method described above, wherein said aromatic L-amino acid is selected from the group consisting of L-phenylalanine, L-tyrosine and L-tryptophan.

It is also an object of the present invention to provide the method described above, wherein said non-aromatic L-amino acid is selected from the group consisting of L-threonine, L-lysine, L-cysteine, L-methionine, L-leucine, L-isoleucine, L-valine , L-histidine, L-glycine, L-serine, L-alanine, L-asparagine, L-aspartate, L-glutamine, L-glutamic acid, L-proline and L-arginine.

In more detail, the present invention is described below.

1. The bacterium according to the present invention.

The bacterium of the present invention is an L-amino acid producing bacterium of the Enterobacteriaceae family, modified so that expression of the yafQ gene in said bacterium is attenuated.

According to the present invention, “L-amino acid producing bacterium” means a bacterium capable of producing and secreting an L-amino acid into a culture medium when the bacterium of the present invention is grown in said culture medium.

As used herein, the term “L-amino acid producing bacterium” also means a bacterium that is capable of producing L-amino acid and causes the accumulation of L-amino acid in a fermentation medium in large quantities, compared to a natural or parent E. coli strain, such as a strain E. coli K-12, and preferably means that the microorganism is able to accumulate in the medium the target L-amino acid in an amount of not less than 0.5 g / l, more preferably not less than 1.0 g / l. The term “L-amino acid” includes L-alanine, L-arginine, L-asparagine, L-aspartic acid, L-cysteine, L-glutamic acid, L-glutamine, L-glycine, L-histidine, L-isoleucine , L-leucine, L-lysine, L-methionine, L-phenylalanine, L-proline, L-serine, L-threonine, L-tryptophan, L-tyrosine and L-valine.

The term “aromatic L-amino acid” includes L-phenylalanine, L-tyrosine and L-tryptophan. The term “non-aromatic L-amino acid” includes L-threonine, L-lysine, L-cysteine, L-methionine, L-leucine, L-isoleucine, L-valine, L-histidine, L-glycine, L-serine, L-alanine, L-asparagine, L-aspartate, L-glutamine, L-glutamic acid, L-proline and L-arginine. Most preferred are L-threonine, L-lysine, L-cysteine, L-leucine, L-histidine, L-glutamic acid, L-phenylalanine, L-tryptophan, L-proline and L-arginine.

The Enterobacteriaceae family includes bacteria belonging to the genera Escherichia, Enterobacter, Erwinia, Klebsiella, Pantoea, Photorhabdus, Providencia, Salmonella, Serratia, Shigella, Morganella, Yersinia, etc. More specifically, bacteria classified as belonging to the Enterobacteriaceae family according to the taxonomy used in the NCBI database (National Center for Biotechnology Information) (http://www.ncbi.nlm.nih.gov/htbinpost/Taxonomy/ can be used. wgetorg? mode == Tree & id = 1236 & lvl = 3 & keep = l & srchmode = l & unlock). A bacterium belonging to the genera Escherichia or Pantoea is preferred.

The term "bacterium belonging to the genus Escherichia" means that the bacterium belongs to the genus Escherichia in accordance with the classification known to the person skilled in the field of microbiology. As an example of a microorganism belonging to the genus Escherichia used in the present invention, the bacterium Escherichia coli (E. coli) may be mentioned.

The range of bacteria belonging to the genus Escherichia that can be used in the present invention is not limited in any way, however, for example, the bacteria described in Neidhardt, F.C. et al. (Escherichia coli and Salmonella typhimurium, American Society for Microbiology, Washington D.C., 1208, Table 1), can be included in the number of bacteria according to the present invention.

The term "bacterium belonging to the genus Pantoea" means that the bacterium belongs to the genus Pantoea in accordance with the classification known to the specialist in the field of microbiology. Recently, several Enterobacter agglomerans species have been classified as Pantoea agglomerans, Pantoea ananatis, Pantoea stewartii or the like based on analysis of the 16S rRNA nucleotide sequence, etc.

The term “bacterium is modified in such a way that the expression of the yafQ gene is weakened” means that the bacterium has been modified so that, as a result of the modification, the bacterium contains a reduced amount of YafQ protein compared to an unmodified bacterium, or the specified bacterium is not able to synthesize YafQ protein. The term “bacterium is modified in such a way that the expression of the yafQ gene is weakened” also means that the target gene is modified in such a way that it encodes a mutant protein (s) with reduced activity.

Since the DinJ protein functions as an antitoxin for the YafQ toxin, according to the present invention, it is possible to inactivate both dinJ and yafQ genes in said bacterium.

The term “inactivation of the yafQ gene” or “inactivation of the dinJ-yafQ operon” means that said gene is modified in such a way that such a modified gene or operon encodes a completely inactive protein (s). It is also possible that natural expression of the modified DNA region is not possible due to deletion of the target gene (s) or its part, shift of the reading frame of the given gene (s), introduction of missense / nonsense mutations (mutations) or modification of regions adjacent to the gene (s), which include sequences that control the expression of gene (s), such as promoter (s), enhancer (s), attenuator (s), ribosome binding site (s), etc.

Gene expression can be estimated by measuring the amount of mRNA transcribed from the target gene using various known techniques, including Northern blotting, quantitative RT-PCR and the like. The amount of protein encoded by this gene can be measured using known methods, including the SDS-PAGE method followed by Western blotting and the like.

The yafQ gene encodes the YafQ toxin protein (synonym - b0225). The dinJ gene encodes the DinJ antitoxin protein (synonym - b0226). Both the yafQ and dinJ genes are located in the dinJ-yafQ operon. The dinJ-yafQ operon (nucleotide numbers 246242 to 246502 for the dinJ gene and 245961 to 246239 for the yafQ gene in the nucleotide sequence with accession number NC_000913.2 in the GenBank database; gi: 49175990) is located on the chromosome of E. coli K-12 strain between open yafK and yafL reading frames. The nucleotide sequence of the yafQ gene and the corresponding amino acid sequence of the protein encoded by the yafQ gene are shown in the Sequence Listing Numbers 1 (SEQ ID NO: 1) and 2 (SEQ ID NO: 2), respectively.

Since representatives of various genera and strains of the Enterobacteriaceae family may experience some variations in the nucleotide sequences, the concept of the inactivated yafQ gene is not limited to the gene shown in the Sequence Listing Number 1 (SEQ ID NO: 1), but may also include genes homologous to it. Thus, a variant of the protein encoded by the yafQ gene can be represented by a protein with a homology of at least 80%, preferably at least 90% and, most preferably, at least 95% with respect to the complete amino acid sequence shown in Sequence Listing number 2 ( SEQ ID NO: 2), provided that the activity of the protein-toxin YafQ.

In addition, the yafQ gene can be represented by a variant that hybridizes under stringent conditions with the nucleotide sequence shown in Sequence Listing number 1 (SEQ ID NO: 1), or with a probe that can be synthesized based on the specified nucleotide sequence, provided that this option encodes a functional protein-toxin YafQ. "Stringent conditions" include those conditions under which specific hybrids are formed, and non-specific hybrids are not formed. A practical example of harsh conditions is a one-time washing, preferably two or three times, at a salt concentration corresponding to standard washing conditions for Southern hybridization, for example 1 × SSC, 0.1% SDS, preferably 0.1 × SSC, 0.1% SDS, at 60 ° C. The length of the probe can be selected depending on the hybridization conditions, usually it is from 100 bp up to 1 kb

Inactivation of the indicated gene can be performed by conventional methods, such as mutagenesis using UV radiation or treatment with nitrosoguanidine (N-methyl-N'-nitro-N-nitrosoguanidine), site-directed mutagenesis, inactivation of the gene by homologous recombination and / or insertion deletion mutagenesis (Yu, D. et al., Proc. Natl. Acad. Sci. USA, 2000, 97:12: 5978-83; and Datsenko KA and Wanner BL, Proc. Natl. Acad. Sci. USA, 2000, 97:12: 6640-45), also called “Red-Dependent Integration.”

YafQ protein production, but not DinJ protein, inhibits bacterial cell growth. Therefore, the activity of the YafQ toxin protein variant activity can be determined, for example, in dinJ and yafQ strains by detecting cell growth retardation due to the synthesis of the YafQ toxin protein variant, which is removed by the synthesis of the DinJ antitoxin protein. Thus, the decrease or absence of activity of the YafQ protein in the bacteria according to the present invention can be determined by comparing the specified bacteria with the parent unmodified bacterium.

Methods for obtaining plasmid DNA, cutting and ligation of DNA, transformation, selection of oligonucleotides as primers and the like can be conventional methods well known to those skilled in the art. These methods are described, for example, in Sambrook, J., Fritsch, E.F., and Maniatis, T., "Molecular Cloning A Laboratory Manual, Second Edition", Cold Spring Harbor Laboratory Press (1989).

L-amino acid producing bacterium

As a bacterium according to the present invention, modified so that the expression of the yafQ gene is impaired, a bacterium capable of producing an aromatic or non-aromatic L-amino acid can be used.

The bacterium of the present invention can be obtained by inactivating the yafQ gene in a bacterium already capable of producing L-amino acids. On the other hand, a bacterium according to the present invention can be obtained by giving a bacterium in which the yafQ gene is already inactivated, the ability to produce L-amino acids.

L-threonine producing bacterium

Examples of the parent strain for producing the L-threonine producing bacterium of the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as E. coli strain TDH-6 / pVIC40 (VKPM B-3996) (US Pat. Nos. 5,175,107 and 5,705,737) , E. coli strain NRRL-21593 (US patent 5939307), E. coli strain FERM BP-3756 (US patent 5474918), E. coli strains FERM BP-3519 and FERM BP-3520 (US patent 5376538), strain E. coli MG442 (Gusyatiner et al., Genetics, 14, 947-956 (1978)), E. coli strains VL643 and VL2055 (European patent application EP 1149911 A) and the like.

The TDH-6 strain is thrC deficient, is able to assimilate sucrose, and contains the leaky UvA gene. The specified strain contains a mutation in the rhtA gene, which causes resistance to high concentrations of threonine and homoserine. Strain B-3996 contains the plasmid pVIC40, which was obtained by introducing into the vector derived from the RSF1010 vector the thrA * BC operon including the thrA mutant gene encoding aspartokinase-homoserine dehydrogenase I, which has a significantly reduced feedback sensitivity to threonine inhibition. Strain B-3996 was deposited on November 19, 1987 at the All-Union Scientific Center for Antibiotics (RF, 117105 Moscow, Nagatinskaya St., 3-A) with inventory number RIA 1867. The strain was also deposited in the All-Russian Collection of Industrial Microorganisms (VKPM) (RF , 117545 Moscow, 1st Road passage, 1) with inventory number B-3996.

Preferably, the bacterium of the present invention is further modified so as to have increased expression of one or more of the following genes:

- mutant thrA gene encoding aspartokinase-homoserine dehydrogenase I, resistant to threonine inhibition by feedback type;

- thrB gene encoding homoserine kinase;

- thrC gene encoding threonine synthase;

- rhtA gene, presumably encoding a transmembrane protein;

the asd gene encoding aspartate β-semialdehyde dehydrogenase, and

- aspC gene encoding aspartate aminotransferase (aspartate transaminase).

The nucleotide sequence of the thrA gene encoding aspartokinase-homoserine dehydrogenase I from Escherichia coli is known (nucleotide numbers 337 to 2799 in sequence with accession number NC_000913.2 in the GenBank database, gi: 49175990). The thrA gene is located on the chromosome of E. coli K-12 strain between the thrL and thrB genes. The nucleotide sequence of the thrB gene encoding homoserine kinase from Escherichia coli is known (nucleotide numbers 2801 to 3733 in sequence with accession number NC_000913.2 in the GenBank database, gi: 49175990). The thrB gene is located on the chromosome of E. coli K-12 strain between the thrA and thrC genes. The nucleotide sequence of the thrC gene encoding a threonine synthase from Escherichia coli is known (nucleotide numbers 3734 to 5020 in the sequence with accession number NC_000913.2 in the GenBank database, gi: 49175990). The thrC gene is located on the chromosome of E. coli K-12 strain between the thrB gene and the open uaaX reading frame. All three of these genes function as one threonine operon.

The mutant thrA gene encoding aspartokinase homoserine dehydrogenase I, which is resistant to threonine inhibition by feedback, as well as the thrB and thrC genes, can be obtained as a single operon from the well-known plasmid pVIC40, which is represented in the producer strain E. coli VKPM B-3996. Plasmid pVIC40 is described in detail in US Pat. No. 5,705,371.

The rhtA gene is located at the 18th minute of the E. coli chromosome near the gInHPQ operon, which encodes the components of the glutamine transport system, the rhtA gene is identical to ORF1 (ybiF gene, nucleotide numbers 764 to 1651 in sequence with accession number AAA218541 in the GenBank database, gi: 440181) , located between the genes pXB and ompX. The DNA region expressed to form the protein encoded by the ORF1 reading frame was named the rhtA gene (rht: resistance to homoserine and threonine). The rhtA23 mutation has also been shown to represent an A-to-G substitution at position -1 with respect to the ATG start codon (ABSTRACTS of 17 ^th International Congress of Biochemistry and Molecular Biology in conjugation with 1997 Annual Meeting of the American Society for Biochemistry and Molecular Biology, San Francisco, California August 24-29, 1997, abstract No.457, EP 1013765 A).

The nucleotide sequence of the E. coli asdm gene is known (nucleotide numbers 3572511 to 3571408 in sequence with accession number NC_000913.1 in the GenBank database, gi: 16131307) and can be obtained by PCR (polymerase chain reaction; link to White, TJ et al., Trends Genet., 5, 185 (1989)) using primers synthesized based on the nucleotide sequence of the gene. Asd genes from other microorganisms can be obtained in a similar way.

Also, the nucleotide sequence of the aspC gene from E. coli is known (nucleotide numbers 983742 to 984932 in the sequence with accession number NC_000913.1 in the GenBank database, gi: 16128895) and can be obtained by PCR. AspC genes from other microorganisms can be obtained in a similar way.

L-lysine producing bacterium

Examples of bacteria producing L-lysine belonging to the genus Escherichia include mutants that are resistant to the L-lysine analogue. The L-lysine analogue inhibits the growth of bacteria belonging to the genus Escherichia, but this inhibition is completely or partially removed when L-lysine is also present in the medium. Examples of the L-lysine analogue include, but are not limited to, oxalisine, lysine hydroxamate, S- (2-aminoethyl ) -L-cysteine (AEC), γ-methyllysis, α-chlorocaprolactam and so on. Mutants that are resistant to these lysine analogues can be obtained by treating bacteria belonging to the genus Escherichia with traditional mutagens. Specific examples of bacterial strains used to produce L-lysine include Escherichia coli strain AJ11442 (PERM BP-1543, NRRL B-12185; see US Pat. No. 4,346,170) and Escherichia coli strain VL611. In these microorganisms, aspartokinase is resistant to feedback inhibition by L-lysine.

Strain WC 196 can be used as a bacterium producer of L-lysine Escherichia coli. This bacterial strain was obtained by selection of the phenotype of resistance to AEC in strain W3110, derived from strain Escherichia coli K-12. The resulting strain was named Escherichia coli AJ13069 and was deposited with the National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, Ministry of International Trade and Industry), currently called the National Institute of Advanced Industrial Science and Technology, International Organizational Depository for Patenting, Central 6, 1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566, Japan (National I nstitute of Advanced Industrial Science and Technology, International Patent Organism Depositary, Central 6, 1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566, Japan), December 6, 1994 and received accession number FERM P -14690. Then, the strain was internationally deposited in accordance with the terms of the Budapest Treaty on September 29, 1995, and the strain received accession number FERM BP-5252 (see US Pat. No. 5,827,698).

L-cysteine producing bacterium

Examples of parental strains used to produce L-cysteine-producing bacteria according to the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as E. coli strain JM15 transformed with various cysE alleles encoding inhibition resistant cysE feedback type serine acetyltransferase (US patent 6218168, patent application of the Russian Federation 2003121601); E. coli strain W3110 containing overexpressed genes encoding a protein capable of secretion of compounds toxic to the cell (US patent 5972663); E. coli strains containing cysteine desulfohydrase with reduced activity (Japanese patent JP 11155571A2); E. coli strain W3110 with increased activity of the positive transcriptional regulator of the cysteine regulon encoded by the cysB gene (international PCT application WO 0127307A1), and the like.

L-Leucine Producer Bacteria

Examples of parent strains used to produce the L-leucine producing bacterium of the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as E. coli strains that are resistant to leucine analogues, including, for example, β-2 -thienylalanine, 3-hydroxyleucine, 4-azaleucine and 5,5,5-trifluoroleucine (Japanese Patent Laid-open 62-34397 and 8-70879), E. coli strains obtained using the genetic engineering methods described in PCT 96 / 06926; E. coli strain H-9068 (JP 8-70879A2), and the like.

The bacterium of the present invention can be improved by enhancing the expression of one or more genes involved in the biosynthesis of L-leucine. Examples of such genes include the leuABCD operon genes and are preferably represented by the mutant lenA gene encoding feedback feedback depleted L-leucine isopropyl malate synthase (US Pat. No. 6,333,342). In addition, the bacterium of the present invention can be improved by enhancing the expression of one or more genes encoding proteins that export the L-amino acid from a bacterial cell. Examples of such genes include the b2682 and b2683 genes (ygaZH genes) (RF patent application 2001117632).

L-histidine producing bacterium

Examples of parent strains used to produce L-histidine producing bacteria of the present invention include, but are not limited to, L-histidine producing bacteria belonging to the genus Escherichia, such as E. coli 24 strain (VKPM B-5945, patent RF 2003677); E. coli strain 80 (VKPM B-7270, RF patent 2119536); E. coli strains NRRL B-12116 - B12121 (US Pat. No. 4,388,405); E. coli strains H-9342 (FERM BP-6675) and H-9343 (FERM BP-6676) (US patent 6344347); E. coli strain H-9341 (FERM BP-6674) (European Patent 1085087); E. coli strain AI80 / pFM201 (US Pat. No. 6,258,554) and the like.

L-glutamic acid producing bacterium

Examples of parent strains used to produce the L-glutamic acid producing bacteria of the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as E. coli strain VL334 thrC ⁺ (European patent EP 1172433). Strain E. coli VL334 (VKPM B-1641) is an auxotroph of L-isoleucine and L-threonine with mutations in the thrC and UvA genes (US patent 4278765). The natural thrC gene allele was transferred to this strain by the general transduction method using bacteriophage P1 grown on cells of the natural E. coli K12 strain (VKPM B-7). The result was a strain, auxotroph for L-isoleucine, VL334thrC ⁺ (VKPM B-8961). This strain has the ability to produce L-glutamic acid.

Examples of parental strains used to produce the L-glutamic acid producing bacterium of the present invention include mutant strains lacking α-ketoglutarate dehydrogenase activity or having reduced α-ketoglutarate dehydrogenase activity. Bacteria belonging to the genus Escherichia, lacking the activity of α-ketoglutarate dehydrogenase or having reduced activity of α-ketoglutarate dehydrogenase, and methods for their preparation are described in US patents 5378616 and 5573945. Specifically, examples of such strains include the following strains:

E. coli W 3110 sucA :: Kmr

E. coli AJ 12624 (FERM BP-3853)

E. coli AJ 12628 (FERM BP-3854)

E. coli AJ 12949 (FERM BP-4881)

E. coli W3110sucA :: Kmr is a strain obtained by disrupting the α-ketoglutarate dehydrogenase gene (hereinafter referred to as the “sucA gene”) in the E. coli W3110 strain. In this strain, the activity of α-ketoglutarate dehydrogenase is completely absent.

Other examples of bacteria producing L-glutamic acid include bacteria belonging to the genus Pantoea, which lack the activity of α-ketoglutarate dehydrogenase, or have reduced activity of α-ketoglutarate dehydrogenase, and can be obtained as described above. Examples of such strains are Pantoea ananatis AJ13356 strain (US Pat. No. 6,331,419), Pantoea ananatis AJ13356 strain deposited at the National Institute of Biological Sciences and Human Technologies, Agency for Industrial Science and Technology, Department of International Trade and Industry (National Institute of Bioscience and Human-Technology, Agency of Industrial Science and Technology, Ministry of International Trade and Industry), now called the National Institute of Advanced Industrial Science and Technology, International Organizational Depository for Patenting, Central 6, 1-1, Higashi 1-H Ome, Tsukuba-shi, Ibaraki-ken, 305-8566, Japan (National Institute of Advanced Industrial Science and Technology, International Patent Organism Depositary, Central 6, 1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566, Japan), February 19, 1998 and received FERM P-16645. Then, the international deposit of this strain was made according to the conditions of the Budapest Treaty of January 11, 1999, and the strain received accession number FERM BP-6615. In the Pantoea ananatis strain AJ13356, αKGDH-E1 activity is absent due to the destruction of the αKGDH-E1 subunit gene (sucA). The above strain, when isolated, was identified as Enterobacter agglomerans and deposited as Enterobacter agglomerans AJ13355 strain. However, it was later classified as Pantoea ananatis based on the nucleotide sequence of 16S rRNA and other evidence (see the Examples section). Although both strains, AJ13355, and the strain AJ13356 obtained from it, were deposited as Enterobacter agglomerans at the above depository, for the purposes of this description they will be referred to as Pantoea ananatis.

L-phenylalanine producing bacterium

Examples of parental strains used to produce the L-phenylalanine-producing bacterium of the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as strain AJ12739 (tyrA :: Tn10, tyrR) (VKMP B-8197); strain HW1089 (ATCC-55371) containing the pheA34 gene (US patent 5354672); mutant strain MWEC101-b (KR8903681); strains NRRL B-12141, NRRL B-12145, NRRL B-12146 and NRRL B-12147 (US patent 4407952) and the like. Also, bacteria belonging to the genus Escherichia, producers of L-phenylalanine, such as E. coli K-12 strain [W3110 (tyrA) / pPHAB] (FERM BP-3566), E. coli K strain, can be used as parent strains. -12 [W3110 (tyrA) / pPHAD] (FERM BP-12659), E. coli K-12 strain [W3110 (tyrA) / pPHATerm] (FERM BP-12662) and E. coli K-12 strain [W3110 (tyrA ) / pBR-aroG4, pACMAB], named as AJ12604 (FERM BP-3579) (European patent EP488424B1). In addition, L-phenylalanine producing bacteria belonging to the genus Escherichia with increased activity of the proteins encoded by the yedA gene or yddG gene can also be used (US patent applications 2003/0148473 A1 and 2003/0157667 A1).

L-tryptophan producing bacterium

Examples of parent strains used to produce L-tryptophan producing bacteria of the present invention include, but are not limited to, L-tryptophan producing bacteria belonging to the genus Escherichia, such as E. coli strains JP4735 / pMU3028 (DSM10122) and JP6015 / pMU91 (DSM10123) lacking the activity of tryptophanyl tRNA synthetase encoded by the mutant trpS gene (US patent 5756345); E. coli strain SV164 (pGH5) containing an allele of the serA gene encoding an enzyme not inhibited by serine in a feedback manner (US Pat. No. 6,180,373); E. coli strains AGX17 (pGX44) (NRRL B-12263) and AGX6 (pGX50) aroP (NRRL B-12264) lacking tryptophanase activity (US patent 4371614); E. coli strain AGX17 / pGX50, pACKG4-pps, which enhances the ability to synthesize phosphoenolpyruvate (international application 9708333, US patent 6319696), and the like.

It was previously shown that the natural allele of the yddG gene, which encodes a membrane protein that is not involved in the biosynthesis of any of the L-amino acids, amplified on a multi-copy vector in a microorganism, gives this microorganism resistance to L-phenylalanine and several analogues of this amino acid. In addition, the introduction of additional copies of the yddG gene into the cells of bacteria producing L-phenylalanine or L-tryptophan can positively affect the production of the corresponding amino acids (PCT international application WO 03044192). Thus, it is desirable that the bacterium producing L-tryptophan be further modified so that expression of the open reading frame yddG is enhanced in this bacterium.

L-proline producing bacterium

Examples of bacteria-producers of L-proline used as the parent strain of the present invention include, but are not limited to strains belonging to the genus Escherichia, such as E. coli strain 702ilvA (VKPM B-8012) deficient in the UvA gene and capable of producing L-proline (European patent EP 1172433). The bacterium of the present invention can be improved by enhancing the expression of one or more genes involved in the biosynthesis of L-proline. Preferably, examples of such genes for L-proline producing bacteria include the proB gene encoding glutamate kinase with desensitized feedback regulation of L-proline (German patent 3127361). In addition, the bacterium of the present invention can be improved by enhancing the expression of one or more genes encoding proteins that secrete the L-amino acid from a bacterial cell. Examples of such genes are the b2682 and b2683 genes (ygaZH genes) (European Patent Application EP 1239041 A2).

Examples of bacteria belonging to the genus Escherichia and having the ability to produce L-proline include the following E. coli strains: NRRL B-12403 and NRRL B-12404 (UK patent GB 2075056), VKPM B-8012 (RF patent application 2000124295), plasmid mutants described in German patent DE 3127361, plasmid mutants described in Bloom FR, et al. (The 15 ^th Miami winter symposium, 1983, p. 34), and the like.

L-arginine producing bacterium

Examples of parent strains used to produce the L-arginine producing bacterium of the present invention include, but are not limited to, strains belonging to the genus Escherichia, such as E. coli strain 237 (VKPM B-7925) and mutant derivatives thereof N-acetylglutamate synthase (RF patent application 2001112869), an arginine producing strain into which the argA gene encoding N-acetylglutamate synthetase (Japanese Patent Application Laid-Open No. 57-5693) has been introduced and the like.

2. The method according to the present invention.

The method according to the present invention is a method for producing an L-amino acid, comprising the steps of growing a bacterium according to the present invention in a nutrient medium for the purpose of producing and accumulating an L-amino acid in a nutrient medium and isolating the L-amino acid from the culture fluid.

According to the present invention, the cultivation, isolation and purification of an L-amino acid from a culture or similar liquid may be carried out in a manner similar to traditional fermentation methods in which the amino acid is produced using a bacterium.

The nutrient medium used for growing can be either synthetic or natural, provided that the medium contains sources of carbon, nitrogen, mineral additives and, if necessary, the appropriate amount of nutrient additives necessary for the growth of microorganisms. Carbon sources include various carbohydrates such as glucose and sucrose, as well as various organic acids. Depending on the nature of the assimilation of the microorganism used, alcohols such as ethanol and glycerin may be used. Various inorganic ammonium salts, such as ammonia and ammonium sulfate, other nitrogen compounds, such as amines, natural nitrogen sources, such as peptone, soybean hydrolyzate, microorganism fermentolizate, can be used as a nitrogen source. As mineral additives, potassium phosphate, magnesium sulfate, sodium chloride, iron sulfate, manganese sulfate, calcium chloride and the like can be used. Thiamine and yeast extract can be used as vitamins.

The cultivation is preferably carried out under aerobic conditions, such as mixing the culture fluid on a rocking chair, shaking with aeration, at a temperature in the range from 20 to 40 ° C, preferably in the range from 30 to 38 ° C. The pH of the medium is maintained in the range from 5 to 9, preferably from 6.5 to 7.2. The pH of the medium can be adjusted by ammonia, calcium carbonate, various acids, bases and buffer solutions. Typically, growing for 1 to 5 days leads to the accumulation of the target L-amino acid in the culture fluid.

After growth, solid residues, such as cells, can be removed from the culture fluid by centrifugation or filtration through a membrane, and then the L-amino acid can be isolated and purified by ion exchange chromatography, concentration and / or crystallization.

Brief Description of the Drawings

Figure 1 shows the relative positions of the yafQL and yafQR primers on the plasmid pACYC184 used to amplify the cat gene.

Figure 2 shows the construction of a chromosomal DNA fragment containing the inactivated dinJ-yafQ operon.

Examples

The present invention will be described in more detail below with reference to the following non-limiting examples of the invention.

Example 1. Construction of a strain with an inactivated operon dinJ-yafQ

1. Deletion of the dinJ-yafQ operon

The strain containing the deletion of the dinJ-yafQ operon was constructed using a technique developed by Datsenko, K.A. and Warmer, B.L. (Proc. Natl. Acad. Sci. USA, 2000, 97 (12), 6640-6645), known as "Red-dependent Integration". In accordance with this technique, yafQL (SEQ ID NO: 3) and yafQR (SEQ ID NO: 4) PCR primers homologous to the regions adjacent to the yafQ gene and the antibiotic resistance reporting gene on a plasmid used as a template were synthesized for PCR. The plasmid pACYC184 (NBL Gene Sciences Ltd., UK) (accession number X06403 in the GenBank / EMBL database) was used as a template for PCR. The following temperature profile for PCR was used: denaturation at 95 ° C for 3 min; the first two cycles: 1 min at 95 ° C, 30 sec at 50 ° C, 40 sec at 72 ° C; and the following 25 cycles: 30 sec at 95 ° C, 30 sec at 54 ° C, 40 sec at 72 ° C; and final polymerization: 5 min at 72 ° C.

The resulting PCR product with a length of 1152 bp (Figure 1), purified by agarose gel, can be used for electroporation into E. coli strain MG1655 (ATCC 700926) containing the plasmid pKD46 with a heat-sensitive replicon. Plasmid pKD46 (Datsenko, KA and Wanner, BL, Proc. Natl. Acad. Sci. USA, 2000, 97: 12: 6640-45) contains a 2154 nucleotide phage λ fragment (positions 31088 through 33241 of the nucleotide sequence with accession number J02459 in the GenBank database), and also contains the genes of λ, the Red homologous recombination system (genes γ, β, exo) under the control of the promoter P _araB ; induced by arabinose. Plasmid pKD46 is required for integration of the PCR product into the chromosome of strain MG1655.

Electrocompetent cells were obtained as follows: an overnight culture of E. coli strain MG1655 was grown at 30 ° C in LB medium supplemented with ampicillin (100 mg / L), diluted 100 times by adding 5 ml of SOB medium (Sambrook et al., "Molecular Cloning A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989)) containing ampicillin and L-arabinose (1 mM). The resulting culture was grown with stirring at 30 ° С until OD ₆₀₀ ≈0.6 was reached, after which the cells were made electrocompetent by 100-fold concentration and three times washing with ice-cold deionized Н ₂ O. Electroporation was performed using 70 μl of cells and ≈100 ng of PCR product. After electroporation, cells were incubated in 1 ml of SOC medium (Sambrook et al., "Molecular Cloning A Laboratory Manual, Second Edition", Cold Spring Harbor Laboratory Press (1989)) at 37 ° C for 2.5 hours, after which they were plated on plates with L-agar and grown at 37 ° C for selection of Cm ^R recombinants. Then, to remove plasmid pKD46, 2 passages were performed on L-agar with Cm at 42 ° C and the obtained colonies were tested for sensitivity to ampicillin.

2. Confirmation of deletions of the dinJ-yafQ operon by PCR

Mutants with the dinJ-yafQ delegated operon containing the Cm resistance gene were verified by PCR. Locus-specific primers yafQ1 (SEQ ID NO: 5) and yafQ2 (SEQ ID NO: 6) were used to verify deletion by PCR. The following temperature profile was used for PCR testing: denaturation at 94 ° C for 3 min; profile for 30 cycles: 30 sec at 94 ° C, 30 sec at 54 ° C, 1 min at 72 ° C; final step: 7 min at 72 ° C. The length of the PCR product obtained by the reaction using the parent strain dinJ-yafQ ⁺ MG1655 as a matrix of cells is 645 bp. The length of the PCR product obtained by the reaction using the mutant strain MG1655 ΔdinJ-yafQ :: cat as a matrix of cells is 1255 bp (Figure 2).

Example 2. Production of L-threonine by E. coli strain B-3996-ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on the production of threonine, DNA fragments of the chromosome of the E. coli strain MG1655 ΔdinJ-yafQ :: cat described above were transferred to the E. coli B-3996 L-threonine producer strain (VKPM B-3996) s using P1 transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY), resulting in strain B-3996-ΔdinJ-yafQ.

Both strains of E. coli B-3996 and B-3996-ΔdinJ-yafQ were grown for 18-24 hours at 37 ° C on plates with L-agar containing chloramphenicol (30 μg / ml). To obtain a seed culture, these strains were grown at 32 ° C for 18 hours on a rotary shaker (250 rpm) in 20 × 200 mm test tubes containing 2 ml of L-broth with 4% sucrose. Then, 0.21 ml (10%) of the inoculum was added to the fermentation medium. Fermentation was carried out in 2 ml of minimal fermentation medium in test tubes measuring 20 × 200 mm. Cells were grown for 65 hours at 32 ° C. with stirring (250 rpm).

After growing, the amount of L-threonine accumulated in the medium was determined by paper chromatography using the mobile phase of the following composition: butanol: acetic acid: water = 4: 1: 1 (v / v). A solution (2%) of ninhydrin in acetone was used for visualization. A spot containing L-threonine was excised, L-threonine was eluted with a 0.5% aqueous solution of CdCl ₂ , after which the amount of L-threonine was estimated spectrophotometrically at a wavelength of 540 nm. The results of 10 independent in vitro fermentations are shown in Table 1.

Used the following composition of the fermentation medium (g / l):

Glucose 80.0 (NH ₄ ) ₂ SO ₄ 22.0 NaCl 0.8 KN ₂ PO ₄ 2.0 MgSO ₄ × 7H ₂ O 0.8 FeSO ₄ × 7H ₂ O 0.02 MnSO ₄ × 5H ₂ O 0.02 Thiamine hydrochloride 0.0002 Yeast extract 1.0 CaCO ₃ 30.0

Glucose and magnesium sulfate were sterilized separately. CaCO _{3 was} dry heat sterilized at 180 ° C for 2 hours. The pH was adjusted to 7.0. The antibiotic was added to the medium after sterilization.

As can be seen from Table 1, strain B-3996-ΔdinJ-yafQ accumulated a greater amount of L-threonine compared to strain B-3996.

Example 3. Production of L-lysine by E. coli strain AJ11442-ΔdinJ-yafO

To assess the effect of inactivation of the dinJ-yafQ operon on lysine production, DNA fragments of the chromosome of the E. coli strain MG1655 ΔdinJ-yafQ :: cat described above can be transferred to E. coli WC196 L-lysine producer strain (pCABD2) using P1 transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). pCABD2 is a plasmid containing the dapA gene encoding a mutant dihydropicolinate synthase that is resistant to feedback inhibition by L-lysine, the lysC gene encoding mutant aspartokinase III, resistant to feedback by L-lysine inhibition, the dapB gene encoding digiducidase ddh gene encoding diaminopimelate dehydrogenase (US patent 6040160).

Both strains of E. coli, the parent WC196 (pCABD2) and the obtained WC196 (pCABD2) ΔdinJ-yafQ :: cat, can be grown in L medium containing 50 mg / l chloramphenicol and 20 mg / l streptomycin at 37 ° C, and 0.3 ml of the obtained cultures can be introduced into 20 ml of a fermentation medium containing the necessary antibiotics in 500 ml flasks. Cultivation can be carried out at 37 ° C for 16 hours using a reciprocating rocking chair with a stirring speed of 115 rpm. After growing, the amounts of L-lysine and residual glucose in the medium can be measured in a known manner (Biotech-analyzer AS210, manufacturer - Sakura Seiki Co.). Then, for each of the strains, the yield of L-lysine in terms of glucose consumed can be calculated.

The composition of the fermentation medium (g / l):

Glucose 40 (NH ₄ ) ₂ SO ₄ 24 K ₂ HPO ₄ 1.0 MgSO ₄ × 7H ₂ O 1.0 FeSO ₄ × 7H ₂ O 0.01 MnSO ₄ × 5H ₂ O 0.01 Yeast extract 2.0

The pH was adjusted to 7.0 with KOH and the medium was autoclaved at 115 ° C for 10 minutes. Glucose and MgSO ₄ × 7H ₂ O are sterilized separately. Also add 30 g / l CaCO ₃ , previously sterilized by dry heat at 180 ° C for 2 hours.

Example 4. Production of L-cysteine by E. coli strain JM15 (ydeD) - ΔdinJ-vafQ

To assess the effect of inactivation of the dinJ-yafQ operon on L-cysteine production, DNA fragments of the chromosome of the E. coli strain MG1655 described above ΔdinJ-yafQ :: cat can be transferred to the E. coli JM15 L-cysteine producer strain (ydeD) using Pl transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY), whereby the strain JM15 (ydeD) - ΔdinJ-yafQ can be obtained. The E. coli strain JM15 (ydeD) is a derivative of the E. coli strain JM15 (US patent 6218168), which can be transformed with DNA containing the ydeD gene encoding a membrane protein not involved in the biosynthesis of any of the L-amino acids (US patent 5972663 )

Fermentation conditions for evaluating L-cysteine production are described in detail in Example 6 of US Pat. No. 6,218,168.

Example 5. Production of L-leucine by E. coli strain 57-ΔdinJ-vafQ To evaluate the effect of inactivation of the dinJ-yafQ operon on the production of L-leucine, DNA fragments of the chromosome of the above E. coli strain MG1655 ΔdinJ-yafQ :: cat can be transferred to E. coli 57 L-leucine producer strain (VKPM B-7386, US Pat. No. 6,124,121) by P1 transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY), in as a result, strain 57-pMW-ΔdinJ-yafQ can be obtained.

Both strains of E. coli, 57 and 57-ΔdinJ-yafQ, can be grown for 18-24 hours at 37 ° C on plates with L-agar containing chloramphenicol (30 μg / ml). To obtain a seed culture, these strains can be grown on a rotary shaker (250 rpm) at 32 ° C for 18 hours in 20x200 mm test tubes containing 2 ml of L-broth with 4% sucrose. Then, 0.21 ml (10%) of the seed culture can be added to the fermentation medium. Fermentation can be carried out in 2 ml of minimal fermentation medium in test tubes measuring 20 × 200 mm. Cells can be grown for 48-72 hours at 32 ° C with stirring (250 rpm).

The amount of L-leucine can be measured using paper chromatography (composition of the mobile phase: butanol: acetic acid: water = 4: 1: 1)

The following composition of the fermentation medium (g / l) (pH 7.2) can be used:

Glucose 60.0 (NH ₄ ) ₂ SO ₄ 25.0 K ₂ HPO ₄ 2.0 MgSO ₄ × 7H ₂ O 1.0 Thiamine 0.01 CaCO ₃ 25.0

Glucose and chalk should be sterilized separately.

Example 6. Production of L-histidine by E. coli strain 80-ΔdinJ-yafO.

To assess the effect of inactivation of the dinJ-yafQ operon on L-histidine production, DNA fragments of the chromosome of the above E. coli strain MG1655 ΔdinJ-yafQ :: cat can be transferred to the E. coli 80 L-histidine producer strain using P1 transduction ( Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). Strain 80 is described in RF patent 2119536 and deposited in the All-Russian collection of industrial microorganisms (Russia, 117545 Moscow, 1st Dorozhniy passage, 1) with accession number VKPM V-7270.

Both strains of E. coli, parent 80 and obtained 80-ΔdinJ-yafQ, can be grown in L-broth containing chloramphenicol (30 mg / ml), at 29 ° C for 6 hours. Then 0.1 ml of the obtained cultures can be introduced into 2 ml of fermentation medium in 20 × 200 mm tubes, and the cultures can be grown at 29 ° C for 65 hours on a rotary shaker (350 rpm). After growing, the amount of histidine accumulated in the medium can be determined by paper chromatography. The mobile phase of the following composition can be used: n-butanol: acetic acid: water = 4: 1: 1 (v / v). A solution of ninhydrin (0.5%) in acetone can be used for visualization.

The composition of the fermentation medium (pH 6.0) (g / l):

Glucose 100.0 Memeno 0.2 total nitrogen L-proline 1.0 (NH ₄ ) ₂ SO ₄ 25.0 KN ₂ PO ₄ 2.0 MgSO ₄ × 7H ₂ O 1.0 FeSO ₄ × 7H ₂ O 0.01 MnSO ₄ 0.01 Thiamine 0.001 Betaine 2.0 CaCO ₃ 60.0

Glucose, proline, betaine and CaCO _{3 are} sterilized separately. The pH is adjusted to 6.0 before sterilization.

Example 7. The production of L-glutamic acid strain E. coli VL334thrC ⁺ -ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on L-glutamic acid production, DNA fragments of the chromosome of the E. coli strain MG1655 ΔdinJ-yafQ :: cat described above can be transferred to the L-glutamic acid producing strain E, VL334thrC ⁺ (EP 1172433) by P1 transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY), whereby strain VL334thrC ⁺ -ΔdinJ-yafQ can be obtained.

Both strains, the parent VL334thrC ⁺ and the obtained VL334thrC ⁺ -ΔdinJ-yafQ, can be grown on L-agar plates containing chloramphenicol (30 μg / ml) at 37 ° C for 18-24 hours. Further, one loop of cells can be transferred to tubes containing 2 ml of fermentation medium. The fermentation medium should contain glucose - 60 g / l, ammonium sulfate - 25 g / l, KH ₂ PO ₄ - 2 g / l, MgSO ₄ - 1 g / l, thiamine - 0.1 mg / ml, L-isoleucine - 70 μg / ml and chalk - 25 g / l (pH 7.2). Glucose and chalk should be sterilized separately. Cultivation can be carried out at 30 ° C for 3 days with stirring. After growing, the amount of L-glutamic acid obtained can be determined by paper chromatography (mobile phase composition: butanol: acetic acid: water = 4: 1: 1), followed by staining with ninhydrin (1% solution in acetone) and further eluting the obtained compounds in 50% ethanol with 0.5% CdCl ₂ .

Example 8. The production of L-phenylalanine strain E. coli AJ12739-ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on the production of L-phenylalanine, DNA fragments of the chromosome of the E. coli strain MG1655 ΔdinJ-yafQ :: cat described above can be transferred to the E. coli L-phenylalanine-producing strain AJ12739 using P1 transduction ( Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). Strain AJ12739 was deposited in the All-Russian Collection of Industrial Microorganisms (VKPM) (Russia, 117545 Moscow, ^1st Dorozhniy proezd, 1) November 6, 2001 with accession number VKPM B-8197.

Both strains, the parent AJ12739 and the obtained AJ12739-ΔdinJ-yafQ, can be grown at 37 ° C for 18 hours in a nutrient broth containing chloramphenicol (30 μg / ml); 0.3 ml of the obtained cultures can be introduced into 3 ml of fermentation medium in 20 × 200 mm tubes, and the cultures can be grown at 37 ° C for 48 hours on a rotary shaker. At the end of the fermentation, the amount of phenylalanine accumulated in the medium can be determined by thin layer chromatography (TLC). For this purpose, 10 × 15 cm TLC plates coated with a 0.11 mm layer of Sorbfil silica gel without a fluorescent indicator can be used (Sorbpolymer Joint-Stock Company, Krasnodar, Russia). Sorbfil plates can be exhibited in the mobile phase of the following composition: propan-2-ol: ethyl acetate: 25% aqueous ammonia: water = 40: 40: 7: 16 (v / v). A solution (2%) of ninhydrin in acetone can be used for visualization.

The composition of the fermentation medium (g / l):

Glucose 40.0 (NH ₄ ) ₂ SO ₄ 16.0 K ₂ HPO ₄ 0.1 MgSO ₄ × 7H ₂ O 1.0 FeSO ₄ × 7H ₂ O 0.01 MnSO ₄ × 5H ₂ O 0.01 Thiamine HCl 0.0002 Yeast extract 2.0 Tyrosine 0.125 CaCO ₃ 20.0

Glucose and magnesium sulfate are sterilized separately. CaCO _{3 is} sterilized by dry heat at 180 ° C for 2 hours. The pH was adjusted to 7.0.

Example 9. Production of L-tryptophan by E. coli strain SV164 (pGH5) -ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on L-tryptophan production, DNA fragments of the chromosome of the above E. coli strain MG1655 ΔdinJ-yafQ :: cat can be transferred to the E. coli L-tryptophan producing strain SV164 (pGH5) using P1 Transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). Strain SV164 (pGH5) is described in detail in US Pat. No. 6,180,373 or European Patent No. 0,662,143.

Both strains obtained SV164 (pGH5) - ΔdinJ-yafQ and parent SV164 (pGH5) can be grown with stirring at 37 ° C for 18 hours in 3 ml of nutrient broth with tetracycline (plasmid marker pGH5) (20 mg / ml ) and chloramphenicol (30 μg / ml). 0.3 ml of the obtained cultures can be introduced into 3 ml of fermentation medium containing tetracycline (20 mg / ml) in 20 x 200 mm test tubes and can be grown at 37 ° C for 48 hours on a rotary shaker at 250 rpm . After growing, the amount of tryptophan accumulated in the medium can be determined using TLC, as described in Example 8. The components of the fermentation medium are presented in Table 2, but the groups of components A, B, C, D, E, F and H should be sterilized separately, as shown in the Table to avoid unwanted interactions during sterilization.

Example 10. The production of L-proline strain E. coli 702ilvA-ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on L-proline production, DNA fragments from the chromosome of the E. coli strain MG1655 ΔdinJ-yafQ :: cat described above can be transferred to the E. coli 702ilvA L-proline producer strain using P1 transduction (Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). Strain 702ilvA was deposited in the All-Russian collection of industrial microorganisms (VKPM) (Russia, 117545 Moscow, ^1st Road passage, 1) with accession number VKPM V-8012.

Both strains of E. coli 702ilvA and 702ilvA-ΔdinJ-yafQ can be grown for 18-24 hours at 37 ° C on plates with L-agar containing chloramphenicol (30 μg / ml). Then fermentation using these strains can be carried out under the same conditions as described in Example 7.

Example 11. The production of L-arginine strain E. coli 382-ΔdinJ-yafQ

To assess the effect of inactivation of the dinJ-yafQ operon on L-arginine production, DNA fragments of the chromosome of the above E. coli strain MG1655 ΔdinJ-yafQ :: cat can be transferred to the E. coli 382 L-arginine producing strain using P1 transduction ( Miller, JH (1972) Experiments in Molecular Genetics, Cold Spring Harbor Lab. Press, Plainview, NY). Strain 382 was deposited in the All-Russian Collection of Industrial Microorganisms (VKPM) (Russia, 117545 Moscow, ^1st Dorozhniy proezd, 1) on April 10, 2000 with accession number VKPM V-7926.

Both strains, obtained 382-ΔdinJ-yafQ and parent 382, can be grown at 32 ° C for 18 hours in 2 ml of LB-broth containing chloramphenicol (30 mg / ml); 0.3 ml of the obtained cultures can be introduced into 2 ml of fermentation medium in 20 × 200 mm test tubes, and the cultures can be grown at 32 ° C for 48 hours on a rotary shaker.

After growing, the amount of L-arginine accumulated in the medium was determined using paper chromatography, and the following composition of the mobile phase was used: butanol: acetic acid: water = 4: 1: 1 (v / v). A solution of ninhydrin (2%) in acetone was used for visualization. A spot containing L-arginine can be excised, L-arginine can be eluted with a 0.5% aqueous solution of CdCl ₂ , after which the amount of L-arginine can be determined spectrophotometrically at a wavelength of 540 nm. The composition of the fermentation medium (g / l):

Glucose 48.0 (NH ₄ ) ₂ SO ₄ 35.0 KN ₂ PO ₄ 2.0 MgSO ₄ × 7H ₂ O 1.0 Thiamine HCl 0.0002 Yeast extract 1.0 L-isoleucine 0.1 CaCO ₃ 5.0

Glucose and magnesium sulfate are sterilized separately. CaCO _{3 is} sterilized by dry heat at 180 ° C for 2 hours. The pH was adjusted to 7.0.

Although the invention has been described in detail with reference to the Best Mode for Carrying Out the Invention, it will be apparent to those skilled in the art that various changes can be made and equivalent replacements made, and such changes and replacements are not outside the scope of the present invention.

Each of the above documents has a link, and all cited documents are part of the description of the present invention.

Table 1 Strain OD ₅₄₀ L-threonine, g / l B-3996 26.1 ± 0.5 23.4 ± 0.4 B-3996-ΔdinJ-yafQ 22.5 ± 0.9 24.9 ± 1.2 table 2 Solutions Component Final concentration, g / l BUT KN ₂ PO ₄ 1.5 NaCl 0.5 (NH ₄ ) ₂ SO ₄ 1.5 L-methionine 0.05 L-phenylalanine 0.1 L-tyrosine 0.1 Mameno (total N) 0.07 AT Glucose 40.0 MgSO ₄ × 7H20 0.3 FROM CaCl ₂ 0.011 D FeSO ₄ × 7H ₂ O 0.075 Sodium citrate 1.0 E Na ₂ MoO ₄ × 2H ₂ O 0.00015 H ₃ IN ₃ 0.0025 CoCl ₂ × 6H ₂ O 0.00007 CuSO ₄ × 5H ₂ O 0.00025 MnCl ₂ × 4H ₂ O 0.0016 ZnSO ₄ × 7H ₂ O 0.0003 F Thiamine HCl 0.005 G CaCO ₃ 30.0 H Pyridoxine 0.03

The pH of solution A was adjusted to 7.1 with NH ₄ OH.

Claims (3)

1. L-threonine producing bacterium belonging to the genus Escherichia, modified in such a way that dinJ-yafQ operon is inactivated in said bacterium. 2. The bacterium according to claim 1, characterized in that said gene of the dinJ-yafQ operon is inactivated by deletion of the dinJ-yafQ operon in the bacterial chromosome. 3. A method of producing L-threonine, comprising growing a bacterium according to any one of claims 1 or 2 in a nutrient medium, causing production and accumulation of L-threonine in the culture fluid, and the isolation of L-threonine from the culture fluid.

Images