RU2012124051A - Системы и способы для обнаружения наличия биологического признака с применением кластеризации - Google Patents
Системы и способы для обнаружения наличия биологического признака с применением кластеризации Download PDFInfo
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- RU2012124051A RU2012124051A RU2012124051/10A RU2012124051A RU2012124051A RU 2012124051 A RU2012124051 A RU 2012124051A RU 2012124051/10 A RU2012124051/10 A RU 2012124051/10A RU 2012124051 A RU2012124051 A RU 2012124051A RU 2012124051 A RU2012124051 A RU 2012124051A
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- 238000000034 method Methods 0.000 title claims abstract 30
- 230000002068 genetic effect Effects 0.000 claims abstract 33
- 206010041925 Staphylococcal infections Diseases 0.000 claims abstract 5
- 208000015688 methicillin-resistant staphylococcus aureus infectious disease Diseases 0.000 claims abstract 5
- 101000773513 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) Uncharacterized protein MK0525 Proteins 0.000 claims abstract 2
- 241000191967 Staphylococcus aureus Species 0.000 claims 6
- 241000894006 Bacteria Species 0.000 claims 2
- 230000003321 amplification Effects 0.000 claims 2
- 238000001514 detection method Methods 0.000 claims 2
- 238000003199 nucleic acid amplification method Methods 0.000 claims 2
- 108020004707 nucleic acids Proteins 0.000 claims 2
- 150000007523 nucleic acids Chemical class 0.000 claims 2
- 102000039446 nucleic acids Human genes 0.000 claims 2
- 108090000623 proteins and genes Proteins 0.000 claims 2
- RJQXTJLFIWVMTO-TYNCELHUSA-N Methicillin Chemical compound COC1=CC=CC(OC)=C1C(=O)N[C@@H]1C(=O)N2[C@@H](C(O)=O)C(C)(C)S[C@@H]21 RJQXTJLFIWVMTO-TYNCELHUSA-N 0.000 claims 1
- 238000006073 displacement reaction Methods 0.000 claims 1
- 238000005259 measurement Methods 0.000 claims 1
- 229960003085 meticillin Drugs 0.000 claims 1
- 239000000090 biomarker Substances 0.000 abstract 1
- 239000000523 sample Substances 0.000 abstract 1
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/112—Disease subtyping, staging or classification
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/30—Unsupervised data analysis
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- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Organic Chemistry (AREA)
- Molecular Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Theoretical Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Databases & Information Systems (AREA)
- Physiology (AREA)
- Artificial Intelligence (AREA)
- Bioethics (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Data Mining & Analysis (AREA)
- Epidemiology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Toxicology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US26114709P | 2009-11-13 | 2009-11-13 | |
| US61/261,147 | 2009-11-13 | ||
| PCT/US2010/056455 WO2011060222A2 (en) | 2009-11-13 | 2010-11-12 | Systems and methods for detecting the presence of a biological status using clustering |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| RU2012124051A true RU2012124051A (ru) | 2013-12-20 |
Family
ID=43806873
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2012124051/10A RU2012124051A (ru) | 2009-11-13 | 2010-11-12 | Системы и способы для обнаружения наличия биологического признака с применением кластеризации |
Country Status (8)
| Country | Link |
|---|---|
| US (3) | US8442924B2 (https=) |
| EP (1) | EP2499591A2 (https=) |
| JP (2) | JP5907880B2 (https=) |
| KR (1) | KR20120101065A (https=) |
| CN (1) | CN102713919B (https=) |
| BR (1) | BR112012011262A2 (https=) |
| RU (1) | RU2012124051A (https=) |
| WO (1) | WO2011060222A2 (https=) |
Families Citing this family (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2373813B1 (de) * | 2008-12-30 | 2012-10-31 | Qiagen Hamburg GmbH | Verfahren zum nachweis methicillin-resistenter staphylococcus aureus (mrsa)-stämme |
| JP5907880B2 (ja) | 2009-11-13 | 2016-04-26 | ベックマン コールター， インコーポレイテッド | クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 |
| EP2617836A1 (en) * | 2012-01-23 | 2013-07-24 | Steffen Mergemeier | Method for detecting a methicillin resistant coagulase positive Staphylococcus aureus strain |
| EP2887245A1 (en) * | 2013-12-20 | 2015-06-24 | Dassault Systèmes | A computer-implemented method for designing a biological model |
| EP4354446A4 (en) * | 2021-06-09 | 2025-05-28 | Kyoto University | INFORMATION PROCESSING DEVICE, INFORMATION PROCESSING METHOD AND PROGRAM |
Family Cites Families (27)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5210015A (en) * | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US6335184B1 (en) * | 1993-07-23 | 2002-01-01 | Bio-Rad Laboratories, Inc. | Linked linear amplification of nucleic acids |
| US5702895A (en) * | 1995-01-19 | 1997-12-30 | Wakunaga Seiyaku Kabushiki Kaisha | Method and kit for detecting methicillin-resistant Staphylococcus aureus |
| JP3957338B2 (ja) | 1996-02-23 | 2007-08-15 | 株式会社カイノス | 診断薬 |
| US6358519B1 (en) * | 1998-02-16 | 2002-03-19 | Ruth S. Waterman | Germ-resistant communication and data transfer/entry products |
| AU782516B2 (en) * | 1999-08-04 | 2005-08-04 | Pharmacia & Upjohn Company | Crystallization and structure determination of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (S. aureus MurB) |
| WO2002082086A2 (en) | 2001-03-15 | 2002-10-17 | Jacques Schrenzel | Detection of methicillin-resistant staphylococcus aureus (mrsa) |
| US20020188424A1 (en) * | 2001-04-20 | 2002-12-12 | Grinstein Georges G. | Method and system for data analysis |
| FR2844807B1 (fr) * | 2002-09-23 | 2005-11-11 | Rambach Alain | Procede de detection de microorganismes resistants a la meticilline |
| CA2515075C (en) * | 2003-02-05 | 2012-10-02 | Iquum, Inc. | Sample processing |
| DE60304481T8 (de) | 2003-11-07 | 2007-03-08 | Federal Rep. of Germany repr.by the Ministry of Health & Soc.Security, the latter repr. by the Pres. of the Robert Koch Inst. | Verfahren zur Identifizierung von Methicilin resistente Staphylococcus aureus (MRSA) |
| EP1541696A1 (en) | 2003-12-09 | 2005-06-15 | Institut Pasteur | A DNA macro-array for staphylococcus aureus identification and typing |
| US7527929B2 (en) * | 2004-07-30 | 2009-05-05 | Agencourt Bioscience Corporation | Methods of isolating nucleic acids using multifunctional group-coated solid phase carriers |
| US7368422B2 (en) * | 2005-02-28 | 2008-05-06 | Novartis Vaccines And Diagnostics Inc. | Semi-synthetic rearranged vancomycin/desmethyl-vancomycin-based glycopeptides with antibiotic activity |
| GB0504537D0 (en) * | 2005-03-04 | 2005-04-13 | Blaze Venture Technologies Ltd | Method and device for bacterial sampling |
| US20070196820A1 (en) * | 2005-04-05 | 2007-08-23 | Ravi Kapur | Devices and methods for enrichment and alteration of cells and other particles |
| US7838221B2 (en) * | 2005-10-11 | 2010-11-23 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) |
| DE602007006478D1 (de) * | 2006-05-12 | 2010-06-24 | Cepheid Sunnyvale | Erkennung der verbindung einer dna-rekombination |
| EP2388593A3 (fr) * | 2006-10-18 | 2012-01-18 | bioMérieux | Procédé de diagnostic in vitro des Staphylococcus aureus producteurs de PVL |
| CA2684570A1 (en) | 2007-04-19 | 2008-10-30 | Molecular Detection Inc. | Methods, compositions and kits for detection and analysis of antibiotic-resistant bacteria |
| EP2183391A4 (en) * | 2007-07-31 | 2010-10-27 | Quest Diagnostics Invest Inc | DETECTION OF METHICILLIN-RESISTANT AND METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS IN BIOLOGICAL SAMPLES |
| US8229678B2 (en) * | 2008-07-25 | 2012-07-24 | Beckman Coulter, Inc. | Methods and systems for transforming particle data |
| US8000940B2 (en) * | 2008-10-08 | 2011-08-16 | Beckman Coulter, Inc. | Shape parameter for hematology instruments |
| US8154273B2 (en) * | 2008-10-10 | 2012-04-10 | Beckman Coulter, Inc. | Detecting and handling coincidence in particle analysis |
| US8581927B2 (en) * | 2008-11-04 | 2013-11-12 | Beckman Coulter, Inc. | Multidimensional particle analysis data cluster reconstruction |
| US8192995B2 (en) * | 2008-11-13 | 2012-06-05 | Beckman Coulter, Inc. | Method of correction of particle interference to hemoglobin measurement |
| JP5907880B2 (ja) | 2009-11-13 | 2016-04-26 | ベックマン コールター， インコーポレイテッド | クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 |
-
2010
- 2010-11-12 JP JP2012539000A patent/JP5907880B2/ja not_active Expired - Fee Related
- 2010-11-12 KR KR1020127015126A patent/KR20120101065A/ko not_active Abandoned
- 2010-11-12 US US12/944,992 patent/US8442924B2/en not_active Expired - Fee Related
- 2010-11-12 RU RU2012124051/10A patent/RU2012124051A/ru not_active Application Discontinuation
- 2010-11-12 CN CN201080051528.1A patent/CN102713919B/zh not_active Expired - Fee Related
- 2010-11-12 EP EP10782487A patent/EP2499591A2/en not_active Withdrawn
- 2010-11-12 WO PCT/US2010/056455 patent/WO2011060222A2/en not_active Ceased
- 2010-11-12 BR BR112012011262A patent/BR112012011262A2/pt not_active IP Right Cessation
-
2013
- 2013-03-29 US US13/853,897 patent/US9519751B2/en not_active Expired - Fee Related
-
2015
- 2015-04-10 JP JP2015080636A patent/JP2015165413A/ja active Pending
-
2016
- 2016-11-11 US US15/349,868 patent/US20170140096A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| KR20120101065A (ko) | 2012-09-12 |
| US20170140096A1 (en) | 2017-05-18 |
| CN102713919B (zh) | 2016-07-06 |
| US20130196334A1 (en) | 2013-08-01 |
| WO2011060222A2 (en) | 2011-05-19 |
| US20110131159A1 (en) | 2011-06-02 |
| CN102713919A (zh) | 2012-10-03 |
| JP5907880B2 (ja) | 2016-04-26 |
| JP2015165413A (ja) | 2015-09-17 |
| US8442924B2 (en) | 2013-05-14 |
| WO2011060222A9 (en) | 2011-07-14 |
| BR112012011262A2 (pt) | 2019-09-24 |
| US9519751B2 (en) | 2016-12-13 |
| JP2013510579A (ja) | 2013-03-28 |
| EP2499591A2 (en) | 2012-09-19 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| FA94 | Acknowledgement of application withdrawn (non-payment of fees) |
Effective date: 20180823 |