NZ724880A - Aberrant cell-restricted immunoglobulins provided with a toxic moiety - Google Patents
Aberrant cell-restricted immunoglobulins provided with a toxic moiety Download PDFInfo
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Abstract
Discloses an immunoglobulin linked with a toxic moiety, comprising at least an immunoglobulin variable region that specifically binds to an MHC-peptide complex preferentially associated with aberrant cells, wherein said peptide is derived from MAGE and is a peptide that is present in more than one MAGE protein, and wherein the MHC is MHC-1, and wherein said immunoglobulin is an antibody, an antibody fragment or a derivative of an antibody.
Description
ABERRANT ESTRICTED IMMUNOGLOBULINS
PROVIDED WITH A TOXIC MOIETY
This present application is a divisional application divided out of New Zealand Patent
ation No. 627300.
CAL FIELD
The invention relates to the field of biotherapeutics. More ically, the invention
relates to immunoglobulins ed with a toxic moiety. Even more specifically, the
invention relates to human antibodies. The invention also relates to the use of these
biotherapeutics in the treatment of a host suffering from a e associated with
aberrant cells, such as cancers and autoimmune diseases.
BACKGROUND
The development of immunoglobulin-drug conjugates is one of the drug development
fields that es high attention nowadays. Humanized or human antibodies are the
largest and most important class of immunoglobulins under investigation for use in
dy-drug ates (ADCs) and in immunotoxins and antibody-radionuclide
conjugates. These dies target binding sites (over)expressed at aberrant cells, such
as those exposed in cancers and (auto)immune diseases, and during infections. Many of
the conjugates have a limited degree of efficacy. For example, the maximum tolerated
dose of immunotoxins is relatively low due to their toxicity towards healthy tissue.
Lowering the dose is one way of protecting healthy cells for the non-specific toxic
activity of the toxin or the drug in ADCs. Lowering the dose, however, hampers the
delivery of an efficacious amount of conjugate at the site of for example a tumor. The
unwanted side reactions are mainly due to the targeting of the antibodies to binding sites
that are not exclusively exposed by aberrant cells but also to some extent by healthy cells.
Thus, insufficient specificity for aberrant cells over healthy cells hampers desired
efficacy and hampers obtaining the desired safety profiles of the nowadays
immunoglobulin-drug conjugates.
Toxic moieties tly in the clinic or under investigation are numerous and diverse
[6]. Amongst the first toxins that were chemically linked to murine antibodies are plant
derived protein toxins and bacterial toxins such as saporin, Diphtheria toxin,
Pseudomonas exotoxin, gelonin, ricin, ricin A chain, abrin and pokeweed antiviral
protein. Other immunoglobulins provided with a toxin moiety comprise single chain Fv
fused at the DNA level with toxins. An example is the recombinant protein BL22
consisting of the Fv portion of an anti-human CD22 antibody fused to a fragment of
monas in-A, that s B-cell malignancies such as hairy cell leukemia
and non-Hodgkin’s lymphoma. Other examples of immunoglobulins conjugated to
toxins are the antibody-radionuclide ates. Human CD20 has been chosen by drug
developers as the target for two monoclonal antibodies, conjugated with 90-Yttrium or
with 131-Iodine, for treatment of non-Hodgkin’s lymphomas. In attempts to improve the
tumor ivity of certain drugs, murine monoclonal antibodies were conjugated to
nds such as doxorubicin, vinblastine, methotrexate, providing so-called
antibody-drug conjugates. Insufficient tumor cell specificity however still limited the
therapeutic ness. Even when selecting tumor cell surface antigens that are (highly)
over-expressed at nt cells, still the low expression levels at healthy cells gives rise
to insufficient selectivity of the dy-drug conjugates. Current cytotoxic anti-tumor
drugs under investigation are for example sinoids and dolastatin analogs, that both
target intracellular tubulin, and duocarmycins and calicheamicins, that target DNA
structure. These compounds are potent in their cytotoxic activtiy, though not selective
for aberrant cells. Antibiotic calicheamicin conjugated to an anti-human CD33
monoclonal antibody was approved and used in the clinic, but was withdrawn due to
serious side effects. Additional examples of drugs currently under investigation for their
potential beneficial use in antibody-drug conjugates meant for the treatment of cellular
aberrancies are icin, hydrazone-calicheamicin, vedotin, emtansine, mertansine.
These toxic moieties are conjugated to immunoglobulins targeting cell surface markers
expressed at tumor cells, though also expressed to some extent at healthy cells. Typical
examples of immunoglobulin-drug conjugate-targeted cell surface s present at
both tumor cells and healthy cells are CD19, CD20, CD22, CD25, CD30, CD33, CD56,
CD70, HER2/neu. All these immunoglobulin-drug conjugate development programs
thus inherently bear the risk for unacceptable safety profiles and consequent poor
cy due to low maximum tolerated doses. Conjugating drugs, radionuclides or toxins
to immunoglobulins specifically and ively ing aberrant cells and not targeting
healthy cells would thus provide for therapies with improved specificity and selectivity
for aberrant cells and with an improved safety profile.
SUMMARY OF THE INVENTION
The present invention provides for an immunoglobulin linked with a toxic moiety,
comprising at least an immunoglobulin variable region that specifically binds to an
MHC-peptide x preferentially associated with aberrant cells, wherein said peptide
is derived from MAGE and is a peptide that is present in more than one MAGE protein,
and wherein the MHC is MHC-1, and wherein said immunoglobulin is an antibody, an
antibody fragment or an antibody derivative, e.g. a Fab or a ScFV.
In certain embodiments the immunoglobulin variable region is a Vh or Vhh and
ally further comprises a Vl. In certain cases the immunoglobulin is a human IgG.
The toxic moiety and immunoglobulin may be chemically linked, for example by a
peptide linker. In certain embodiments the toxic moiety is a proteinaceous toxic moiety.
In this case the globulin linked to the toxic moiety may be encoded at the DNA
level.
The invention also provides for pharmaceutical compositions comprising the
globulin linked with a toxic moiety as described herein, and a suitable diluent
and/or excipient.
Further ed for is the use of an immunoglobulin linked with a toxic moiety as
described herein, in the manufacture of a medicament for the treatment of a host suffering
from a disease associated with aberrant cells, preferably whereby the toxic moiety is
alized during said treatment. Also ed is the use of an immunoglobulin linked
with a toxic moiety as described , in the manufacture of a medicament for the
treatment of a host suffering from a cancer, wherein at least the toxic moiety is
internalized during said treatment.
DISCLOSURE OF THE INVENTION
ic and selective delivery of a toxic moiety in target aberrant cells demands for
binding molecules specific for binding sites preferentially associated with aberrant cells.
These binding molecules then are used as carriers and transporters of the toxic moieties,
specifically and selectively delivering the toxic moieties at and in the aberrant cells. We
here disclose immunoglobulin-drug conjugates sing these preferred features. The
immunoglobulins in the immunoglobulin-drug conjugates of the invention se
immunoglobulin binding regions with improved selectivity for aberrant cells by
specifically binding to binding sites preferentially associated with these nt cells.
We disclose as preferred targets for the dy of the invention, intracellular ns
that are associated with aberrant cells. These proteins are available as peptides presented
by MHC on the e of aberrant cells. The use of MHC-peptide complexes as targets
opens us a new field of tumor targets, e so far lly targets associated with the
surface of aberrant cells have been envisaged. Although it is preferred that the target is
specific for aberrant cells (tumor cells) in many cases upregulated intracellular proteins
are also suitable for at least improving the therapeutic window of immunotoxins. Our
most preferred targets are peptides derived from MAGE presented in the context of
MHC-1. In particular MAGE peptides that are present in more than one MAGE protein
(multi-MAGE epitope; see WO2012/091564 incorporated herein by reference).
The toxic moiety according to the invention is preferably a drug compound, a
radionuclide or a toxin. The toxic moiety ing to the invention is a nonproteinaceous
molecule or a proteinaceous molecule. In the immunoglobulin-drug
conjugates of the invention, the toxic moiety is preferably ated by chemical
conjugation. Also preferred are immunoglobulins of the invention fused at the DNA level
to a proteinaceous toxic moiety.
The immunoglobulins in the immunoglobulin-drug conjugates of the invention are
suitable for the specific and selective localization of a toxic effect inside targeted aberrant
cells, leaving healthy cells ially unaffected. Immunoglobulins comprise
immunoglobulin binding domains, referred to as immunoglobulin variable domains,
comprising immunoglobulin variable regions. Maturation of immunoglobulin variable
s results in variable domains adapted for specific binding to a target binding site.
Immunoglobulins are therefore ularly suitable for providing the immunoglobulindrug
conjugates of the invention with the ability to specifically and selectively target
aberrant cells. At their surface, aberrant cells present aberrant cell-associated antigen
peptides in the context of major histocompatibility complex (MHC). ore, for the
immunoglobulins in the immunoglobulin-drug conjugates of the ion, aberrant sociated
MHC-1 peptide complexes are a preferred target on aberrant cells. In addition,
aberrant cell-associated MHC-2 peptide complexes are le targets on e.g. tumors of
hematopoietic origin, for the immunoglobulins in the immunoglobulin-drug conjugates
of the invention. The present invention therefore es globulins in
immunoglobulin-drug conjugates, with improved specificity and selectivity for aberrant
cells by targeting MHC-peptide complexes which are preferentially associated with
aberrant cells. This improved specificity and ivity for aberrant cells is accompanied
with a reduced level of unintentional targeting of healthy cells by the immunoglobulins
in the immunoglobulin-drug conjugates of the invention. Most preferably, healthy cells
are not targeted by the immunoglobulin-drug conjugates of the ion. Thus, in a first
embodiment the invention provides an immunoglobulin provided with a toxic moiety,
comprising at least an immunoglobulin variable region that specifically binds to an
ptide complex preferentially associated with aberrant cells. Preferred
globulins of the invention are antibodies, but fragments and/or derivatives such
as Fab and/or ScFv can also be used. Even more preferred immunoglobulins of the
invention are antibodies of the immunoglobulin G (IgG) type. Other immunoglobulins
of the invention are for example heavy-chain (only) antibodies comprising Vh or Vhh
and IgA, and their fragments such as Fab fragments, and Fab nts of IgG’s.
Immunoglobulins bind via their immunoglobulin variable s to binding sites on
molecules, such as epitopes, with a higher binding affinity than background interactions
between molecules. In the context of the invention, background interactions are typically
interactions with an affinity lower than a KD of 10E-4 M. Immunoglobulin variable
domains in light chains (Vl) and immunoglobulin variable domains in heavy chains (Vh)
of antibodies typically comprise the aberrant-cell specific immunoglobulin variable
regions of the invention. Thus, in one embodiment the invention provides an
immunoglobulin provided with a toxic moiety, comprising at least an immunoglobulin
variable , wherein said immunoglobulin le region is a Vh(h) that specifically
binds to an MHC-peptide x preferentially associated with aberrant cells. Thus, in
yet r embodiment the invention also provides an immunoglobulin provided with a
toxic , comprising at least an globulin variable region, wherein said
immunoglobulin variable region is a Vh that specifically binds to an MHC-peptide
x preferentially associated with aberrant cells, and wherein said immunoglobulin
variable region further comprises a Vl.
As said, immunoglobulins G are particularly suitable g molecules for use in
ies specifically and selectively targeting aberrant cells, for site-specific delivery of
a toxic moiety according to the invention. e the pated predominant use of
the antibodies of the invention is in therapeutic treatment regimes meant for the human
body, in a particular embodiment of the invention, the immunoglobulins ed with a
toxic moiety have an amino-acid sequence of human origin. Thus, in one embodiment
the invention provides a human IgG provided with a toxic moiety, comprising at least an
immunoglobulin variable region, wherein said immunoglobulin variable region is a Vh
that specifically binds to an MHC-peptide complex preferentially associated with
aberrant cells, and wherein said immunoglobulin variable region further comprises a Vl.
Of course, humanized antibodies, with the precursor antibodies encompassing amino
acid sequences originating from other species than human, are also part of the invention.
Also part of the invention are chimeric antibodies, comprising (parts of) an
immunoglobulin variable region according to the invention originating from a species
other than human, and d onto a human antibody.
An aberrant cell is defined as a cell that deviates from its y normal counterparts.
Aberrant cells are for example tumor cells, cells invaded by a pathogen such as a virus,
and autoimmune cells.
Thus, in one embodiment the invention es an immunoglobulin according to any of
the entioned embodiments wherein the MHC-peptide x is specific for
aberrant cells.
In the molecules of the invention the toxic moieties are preferably ally linked to
the immunoglobulins via any linker chemistry know in the art, and optionally via an
additional spacer. According to the invention, one or several, preferably two to six toxic
moiety molecules are chemically linked to an immunoglobulin molecule of the invention.
The number of conjugated toxic moiety molecules per single immunoglobulin molecule
is cted by boundaries such as the number of available sites for conjugation on the
immunoglobulin, the stability of the ate, the preservation of the ability of the
immunoglobulin to specifically bind to an aberrant cell, etc. Of course, also two, three,
etc. different toxic moieties can be linked to an immunoglobulin, depending amongst
others on available binding sites and the applied linker chemistry. al linking of
the toxic moieties has several advantages when working with immunoglobulins. This
way, toxic moieties cannot interfere with expression, folding, assembly and secretion of
the immunoglobulin molecules. Thus, in one embodiment the invention provides an
immunoglobulin according to any of the aforementioned embodiments wherein the toxic
moiety is chemically linked to the immunoglobulin. It is then also part of the current
invention that toxic moieties are covalently bound via peptide bonds, and preferably via
a e linker, to the immunoglobulins of the invention. The toxic moiety and the
globulin are then fused at the DNA level. Thus, in one embodiment the invention
provides an globulin according to any of the entioned embodiments
wherein the toxic moiety is a protein, preferably fused to the immunoglobulin at the DNA
level, preferably through a linker sequence. In many instances a simple Gly-Ser linker of
4-15 acid es may suffice, but if greater flexibility between the
immunoglobulin and the toxic moiety is desired longer or more complex linkers may be
used. Preferred linkers are (Gly4Ser)n,
(GlySerThrSerGlySer)n,GlySerThrSerGlySerGlyLysProGlySerGlyGluGlySerThrLysGl
y, GlyPheAlaLysThrThrAlaProSerValTyrProLeuAlaProValLeuGluSerSerGlySerGly or
any other linker that provides flexibility allowing protein folding, stability t
red proteolytic activity and flexibility for the immunoglobulins of the invention to
exert their ty. Another group of preferred linkers are linkers based on hinge regions
of immunoglobulins. These s tend to be quite flexible and quite ant to
proteases. The most preferred linkers based on hinge regions are
GluProLysSerCysAspLysThrHisThr (linking Ch1 and Ch2 in IgG1),
GluLeuLysThrProLeuGlyAspThrThrHisThr (IgG3), and GluSerLysTyrGlyProPro
(IgG4). Thus, the role of any applied chemical linker in conjugates according to the
ion or the role of any applied peptide linker in fused molecules according to the
invention is aiding the dual activity of the antibodies of the invention, i.e. specific and
selective binding of the immunoglobulin to aberrant cells, and subsequent delivery of at
least the toxic moiety in the targeted aberrant cells. Thus, in one embodiment the
invention provides the use of an immunoglobulin provided with a toxic moiety according
to any of the aforementioned embodiments, for the treatment of a host suffering from a
e associated with aberrant cells. In a further embodiment the invention provides
the use of an immunoglobulin provided with a toxic moiety according to any of the
aforementioned embodiments, for the treatment of a host suffering from a disease
associated with aberrant cells wherein at least the toxic moiety is internalized into the
nt cell. According to the invention, the immunoglobulins provided with a toxic
moiety are for example used for the treatment of cancer. Thus, in a preferred embodiment
the invention provides an immunoglobulin ed with a toxic moiety according to any
of the entioned embodiments for use in the ent of cancer.
Preferred toxic moieties according to the ion are numerous. Several es of
preferred toxic moieties according to the invention are drugs such as doxorubicin,
cisplatin, carboplatin, vinblastine, methotrexate, chelated radioactive metal ions,
(synthetic) antineoplastic agents such as monomethyl auristatin E, radioactive iodine,
radionuclides such as 90-Yttrium, 131-Iodine, to name a few, which are chemically
conjugated to the globulins of the invention. Also preferred toxic moieties
ing to the invention are proteinaceous toxins such as a fragment of Pseudomonas
in-A, statins, ricin A, gelonin, saporin, interleukin-2, interleukin-12, viral proteins
E4orf4, apoptin and NS1, and non-viral proteins HAMLET, TRAIL and mda-7. Thus, in
one embodiment of the invention, antibodies are provided for the specific targeting of
aberrant cells, wherein the toxic moiety is selected from the list of available toxic
moieties comprising toxins such as a fragment of Pseudomonas in-A, statins,
chelated radioactive metal ions, radioactive iodine, ricin A, gelonin, saporin, interleukin-
2, eukin-12, radionuclides such as 90-Yttrium, 131-Iodine, drugs such as
doxorubicin, taxol or derivatives, 5-FU, anthracyclines, vinca alkaloids, calicheamicins,
cisplatin, carboplatin, vinblastine, methotrexate, (synthetic) antineoplastic agents such as
monomethyl auristatin E, apoptin, parvovirus-H1 NS1 n, E4orf4, TRAIL, mda-7,
HAMLET.
According to the invention proteinaceous molecules are molecules sing at least a
string of amino acid residues. In addition, according to the invention the proteinaceous
molecules may comprise carbohydrates, disulphide bonds, orylations,
sulphatations, etc.
When antibodies of the invention are designed to first bind to a target aberrant cell,
followed by internalization, the toxic moiety can then subsequently have its intracellular
(cytotoxic) function, i.e. inducing apoptosis.
For administration to subjects the antibodies of the invention must be formulated.
Typically these antibodies will be given parenterally. For formulation simply water
(saline) for injection may suffice. For stability reasons more complex formulations may
be necessary. The invention contemplates lyophilized compositions as well as liquid
compositions, provided with the usual additives. Thus, in one embodiment the invention
provides a pharmaceutical composition comprising an immunoglobulin provided with a
toxic moiety according to any of the aforementioned embodiments and le diluents
and/or excipients.
The dosage of the antibodies of the invention must be established through animal studies,
(cell-based) in vitro studies and clinical studies in so-called rising-dose ments.
Typically, the doses will be comparable with present day antibody dosages (at the molar
level). Typically, such dosages are 3-15 mg/kg body weight, or 0 mg per dose.
In addition, especially in the more difficult to treat cellular aberrancies the first
applications of the antibodies of the invention will (at least initially) probably take place
in combination with other treatments (standard care). Of course, the invention also
es antibodies for use in novel or first ents of any malignancy anied
by the occurrence of aberrant cells, for which current treatments are not efficient enough
or for which currently no treatment options are available. Thus, for example the invention
also es a pharmaceutical composition comprising an invented immunoglobulin
provided with a toxic moiety and a conventional cytostatic and/or tumoricidal agent.
Moreover, the current invention also provides a pharmaceutical composition sing
an invented immunoglobulin provided with a toxic moiety for use in an nt
treatment of cancer. Thus, in one embodiment of the ion, an invented
immunoglobulin provided with a toxic moiety for use in an nt treatment of cancer
is provided. Additionally, the current invention also provides a pharmaceutical
composition comprising an invented immunoglobulin provided with a toxic moiety for
use in a combination chemotherapy treatment of cancer. es of chemotherapeutical
treatments that are combined with the pharmaceutical composition of the current
ion are etoposide, paclitaxel, cisplatin, doxorubicin and methotrexate.
The pharmaceutical compositions according to the invention will typically find their use
in the treatment of cancer, particularly in forms of cancer where the targets of the
preferred antibodies of the invention (complexes of MHC and tumor-specific antigen
peptides) are presented by the tumors. Table 1, for example, gives a list of tumors on
which complexes of MHC and MAGE-A peptides have been found. It is easy using an
dy of the invention to identify tumors that present these target MHC-peptide
complexes. This can be done in vitro or in vivo (imaging).
It is preferred that the cell-surface molecules comprising the g sites for the
antibodies of the invention are internalized into the ed aberrant cell, together with
the antibodies of the ion, or together with at least the toxic moiety of the antibodies
of the invention. In a particularly preferred embodiment of the invention the targeted
aberrant cells go into sis as a result of said internalization. Thus, in one
embodiment the invention provides the use of an immunoglobulin provided with a toxic
moiety according to any of the entioned embodiments, for the treatment of a host
ing from cancer, wherein at least the toxic moiety is alized into the aberrant
cell.
The ion of course also comprises a nucleic acid molecule encoding the
immunoglobulin part of an antibody according to any of the embodiments of the
invention, when the toxic moiety is chemically linked to the immunoglobulin in the
antibody of the invention. Thus, the invention also comprises a nucleic acid molecule
encoding an immunoglobulin and a toxic moiety according to any of the embodiments
of the invention, when the toxic moiety is fused to the immunoglobulin at the DNA level.
These molecules according to the ion can be produced in prokaryotes or
otes. The codon usage of prokaryotes may be different from that in eukaryotes.
The nucleic acids according to the ion can be adapted in these respects. Also,
elements that are necessary for secretion may be added, as well as promoters, terminators,
enhancers etc. Also, elements that are necessary and/or cial for the isolation and/or
purification of the immunoglobulins of the invention or of the antibodies of the invention
may be added. Typically, the nucleic acids according to the invention are provided in an
expression vector suitable for the host in which they are to be produced. Choice of a
production platform will depend on the size of the molecule, the expected issues around
protein folding, whether amino-acid sequences are present in the immunoglobulin or in
the antibody that require glycosylation, expected issues around isolation and/or
purification, etc. For example, the presence of ide bonds in immunoglobulins or
proteinaceous toxins of the invention will typically guide the selection of the preferred
production platform. Thus, typically c acids according to the invention are d
to the production and purification platform in which the immunoglobulins optionally
with their fused proteinaceous toxins of the invention are to be ed. Thus, the
invention provides a vector comprising a nucleic acid le encoding an
immunoglobulin or an dy of the invention. For stable expression in an eukaryote
it is preferred that the nucleic acid encoding the immunoglobulin or the dy of the
invention is integrated in the host cell genome (at a suitable site that is not silenced). In
one embodiment the invention therefore ses: a vector comprising means for
integrating the nucleic acid in the genome of a host cell. The invention further comprises
the host cell or the organism in which the nucleic acid molecule encoding for the
immunoglobulin of the invention optionally with their fused naceous toxins, is
present and which is thus capable of producing the immunoglobulin optionally with their
fused proteinaceous toxins of the invention. Thus, in a preferred embodiment the
invention comprises a cell comprising a nucleic acid molecule according to the invention,
preferably ated in its genome and/or a vector according to the invention,
sing a nucleic acid molecule encoding an immunoglobulin optionally with their
fused proteinaceous toxins of the invention.
Included in the present invention is also a method for producing an immunoglobulin
optionally with their fused proteinaceous toxins of the invention, comprising culturing a
cell ing to the invention, comprising a nucleic acid molecule encoding an
immunoglobulin optionally with their fused proteinaceous toxins of the invention,
preferably integrated in the cell’s genome and/or a vector according to the ion,
comprising a nucleic acid molecule encoding an immunoglobulin optionally with their
fused proteinaceous toxins of the invention, ng for expression of the
immunoglobulin optionally with their fused proteinaceous toxins and separating the
immunoglobulin optionally with their fused proteinaceous toxins from the culture.
In one embodiment of the invention the immunoglobulin variable domains in the
molecules of the ion target one binding site. Also according to the invention, ific
immunoglobulins provided with a toxic moiety are provided that are specifically
binding to two ent binding sites associated with the cell surface of aberrant cells.
By targeting with a single antibody of the ion two ent binding sites on an
nt cell such as a tumor cell, the risk that both targets are also jointly present on a
healthy cell is significantly further diminished. The affinity of the antibodies of the
invention for the two different target binding sites separately, preferably is designed such
that Kon and Koff are very much skewed towards binding to both different binding sites
aneously. Thus, the specificity of the bi-specific antibodies of the invention is
increased by increasing their specificity for binding to two different binding sites
associated with aberrant cells. Thus, in one embodiment of the ion, the antibody
according to any of the previous embodiments is a hetero-dimeric bi-specific
immunoglobulin G or heavy-chain only antibody comprising two different but
complementary heavy chains. The two different but complementary heavy chains may
then be zed through their respective Fc regions. Upon applying preferred pairing
mistry, hetero-dimers are preferentially formed over homo-dimers. For example,
two different but complementary heavy chains are subject to forced pairing upon
applying the “knobs-into-holes” CH3 domain engineering technology as described
[Ridgway et al., Protein Engineering, 1996 (ref. 14)]. In a preferred embodiment of the
invention the two different immunoglobulin variable s in the bi-specific
immunoglobulins of the invention specifically bind to an ptide complex
preferentially associated with aberrant cells.
Typical preferred antibodies of the invention are exemplified by the antibodies outlined
in this n, in Figure 5B, and by the examples provided below and in the Examples
section. Thus the invention provides an immunoglobulin provided with a toxic moiety
according to Figure 5B.
One aspect of the invention relates to a method for providing the antibodies of the
invention. As bed herein above, it typically involves providing a nucleic acid
construct encoding the desired immunoglobulin part of antibodies of the invention, or
encoding the desired immunoglobulin fused to a naceous toxic moiety. Said nucleic
acid construct can be introduced, preferably via a plasmid or expression vector, into a
prokaryotic host cell and/or in a plant cell and/or in a eukaryotic host cell capable of
expressing the construct. In one embodiment, a method of the invention to provide an
immunoglobulin or to provide an immunoglobulin fused to a proteinaceous toxic moiety
comprises the steps of providing a host cell with the c acid(s) encoding said
immunoglobulin or said immunoglobulin fused to a naceous toxic moiety, and
allowing the expression of said nucleic acid(s) by said host cell.
It is part of the invention that c acids coding for selected (human) immunoglobulin
Vh(h) domains according to any of the above embodiments are combined with nucleic
acids coding for human immunoglobulin heavy chain constant domains, ing
nucleic acid molecules of the ion encoding for a heavy chain of a human antibody.
The human antibody heavy chain protein product of such a c acid le of the
invention, then may be hetero-dimerized with a universal human antibody light chain. It
is also part of the invention that nucleic acids coding for (jointly) selected human
immunoglobulin Vl domains and Vh domains according to any of the above
embodiments are combined with nucleic acids coding for a human immunoglobulin light
chain constant domain and are combined with nucleic acids coding for human
immunoglobulin heavy chain constant domains, respectively, ing nucleic acid
molecules of the invention encoding for a light chain and for a heavy chain of a human
antibody. In yet another embodiment of the invention, the nucleic acids coding for the
complementarity determining regions 1, 2 and 3 (CDR1, CDR2, CDR3), forming
together the immunoglobulin variable region of a selected immunoglobulin Vh domain
and/or a ed immunoglobulin Vl domain according to any of the above ments
are combined with nucleic acids coding for human immunoglobulin Vh domain frame
work regions and/or human immunoglobulin Vl domain frame work regions,
respectively, providing nucleic acid molecules of the invention encoding for a heavy
chain variable domain (Vh) of a human antibody and/or encoding for a light chain
variable domain (Vl) of a human antibody (A method known in the art as ‘grafting’).
These nucleic acid molecules encoding for variable domains Vh and/or Vl are, as part of
the invention, then combined with nucleic acids coding for human globulin
nt domains, providing a nucleic acid molecule encoding for a human antibody
heavy chain and/or providing a nucleic acid molecule ng for a human dy
light chain.
According to the invention, immunoglobulins or immunoglobulins fused to a
proteinaceous toxic moiety are for example expressed in plant cells, eukaryotic cells or
in prokaryotic cells. Non-limited examples of suitable expression systems are tobacco
plants, Pichia pastoris, Saccharomyces cerevisiae. Also ree recombinant protein
production platforms are suitable. Preferred host cells are bacteria, like for example
bacterial strain BL21 or strain SE1, or mammalian host cells, more preferably human
host cells. Suitable mammalian host cells include human embryonic kidney (HEK-293)
cells, PerC6 cells or preferably Chinese hamster ovary (CHO) cells, which can be
cially obtained. Insect cells, such as S2 or S9 cells, may also be used using
baculovirus or insect cell expression vectors, gh they are less le when the
immunoglobulins or the fused globulins-toxic moiety molecules according to the
invention include elements that involve glycosylation. The produced immunoglobulins
or fused immunoglobulin-toxic moiety molecules according to the invention can be
extracted or isolated from the host cell or, if they are secreted, from the culture medium
of the host cell. Thus, in one embodiment a method of the invention comprises providing
a host cell with one or more nucleic acid(s) encoding said immunoglobulin or said fused
immunoglobulin-toxic moiety molecule, allowing the expression of said nucleic acids by
said host cell. In another preferred embodiment a method of the invention comprises
providing a host cell with one or more c ) encoding two or more different
immunoglobulins or two or more different fused immunoglobulin-toxic moiety
molecules, allowing the expression of said nucleic acids by said host cell. For example,
in one embodiment, nucleic acids encoding for a so-called universal immunoglobulin
light chain and nucleic acids encoding for two or more different immunoglobulin heavy
chains are provided, enabling isolation of pecific immunoglobulins or monospecific
fused globulin-toxic moiety molecules comprising homo-dimers of
heavy chains and/or ng isolation of bi-specific immunoglobulins or bi-specific
fused immunoglobulin-toxic moiety molecules comprising hetero-dimers of heavy
chains, with all ent heavy chains complexed with a universal light chain. Methods
for the recombinant expression of (mammalian) proteins in a (mammalian) host cell are
well known in the art.
As said, it is preferred that the immunoglobulins of the invention are linked with the toxic
es via bonds and/or binding interactions other than peptide bonds. Methods for
linking proteinaceous molecules such as globulins to other proteinaceous
molecules or non-proteinaceous molecules are numerous and well known to those skilled
in the art of protein e chemistry. Protein linkage chemistry not based on peptide
bonds can be based on covalent interactions and/or on non-covalent interactions. A
typical example of linkage tries able for linking toxic moieties to
immunoglobulins of the invention are the s applications of the Universal Linkage
System disclosed in patent applications WO92/01699, WO96/35696, WO98/45304,
WO03040722.
As will be clear, an antibody of the invention finds its use in many therapeutic
applications and non-therapeutic applications, e.g. diagnostics, or scientific applications.
Antibodies of the invention, or more preferably the immunoglobulin part of the
antibodies of the invention, suitable for diagnostic purposes are of particular use for
monitoring the expression levels of molecules exposing g sites on nt cells
that are targeted by dies of the invention. In this way, it is monitored whether the
therapy remains efficacious or whether other antibodies of the invention targeting one or
two different binding sites on the aberrant cells should be d instead. This is
beneficial when the expression levels of the first or the first two targeted g site(s)
are below a n threshold, whereas another or new binding sites (still) can serve as
newly targeted binding sites for antibodies of the invention comprising the appropriate
specific immunoglobulin variable regions for these alternative binding site(s).
Antibodies of the invention may also be used for the detection of (circulating) tumor
cells, and for the target-cell specific delivery of immune-stimulatory molecules. For these
later two uses, the sole immunoglobulins of the invention without the fused or conjugated
toxic moiety may also be used.
Provided herein is a method for inducing ex vivo or in vivo a modulating effect on a
biological process in a target cell, comprising contacting said cell with an dy of the
invention in an amount that is effective to induce the modulating effect. Preferably, the
antibody of the invention is used for a modulating effect on a biological process of
aberrant cells in a subject, more preferably a human subject. For therapeutic applications
in humans it is of course preferred that an antibody of the invention does not contain
amino acid sequences of non-human origin. More preferred are antibodies of the
invention, which only contain human amino acid sequences. Therefore, a therapeutically
effective amount of an antibody of the invention capable of recognizing and binding to
one or two disease-specific binding sites and uently ng a ting effect
on a biological process in the cell, can be administered to a patient to ate
eradication of aberrant cells expressing the binding site(s) without affecting the viability
of (normal) cells not expressing said disease-specific binding site(s). The specific killing
of aberrant cells while minimizing or even avoiding the deterioration or even death of
y cells will generally improve the therapeutic outcome of a patient after
administration of the antibodies of the invention.
Accordingly, also provided is the use of an antibody of the invention as medicament. In
another aspect, the invention provides the use of an antibody of the invention for the
manufacture of a medicament for the treatment of cancer, autoimmune disease, infection
or any other disease of which the symptoms are reduced upon targeting aberrant cells
expressing e-specific binding sites with antibodies of the invention. For example,
an antibody of the invention is advantageously used for the manufacture of a medicament
for the treatment of various cancers (e.g. solid tumors, logic malignancies).
An e of a preferred antibody of the invention is an antibody comprising at least
an immunoglobulin variable region specifically g to the complex between MHC-
1 HLA-0201 and a multi-MAGE-A epitope, conjugated with a toxic moiety, using for
example Universal Linkage System linker try for conjugation. A second example
of a preferred antibody of the invention is an antibody comprising at least an
immunoglobulin le region specifically g to the x between MHC-1
HLA-CW7 and a multi-MAGE-A epitope, conjugated with a toxic moiety, using for
example Universal e System linker chemistry for ation. With the bispecific
antibodies of the invention, difficult to target and/or difficult to reach nt
cells have a higher chance of being ‘hit’ by at least one of the two different
immunoglobulin variable regions in the bi-specific antibodies of the invention, thereby
providing at least in part the therapeutic activity. An example of a preferred bi-specific
antibody of the invention is an immunoglobulin comprising an immunoglobulin variable
region specific for the complex between MHC-1 HLA-0201 and a multi-MAGE-A
e and comprising a second immunoglobulin variable region specific for the
complex between MHC-1 7 and a second multi-MAGE-A epitope, conjugated
with a toxic moiety.
Antibody fragments of human origin can be isolated from large antibody repertoires
displayed by phages. One aspect of the invention, known by the art, is the use of human
antibody phage display libraries for the selection of human antibody fragments ic
for a selected binding site, e.g. an epitope. Examples of such libraries are phage libraries
sing human Vh repertoires, human Vh-Vl repertoires, human Vh-Ch1 or human
antibody Fab fragment repertoires.
Although the ion contemplates many different ations of MHC and
antigenic peptides the most preferred is the combination of MHC-1 and an antigenic
peptide from a tumor related antigen presented by said MHC-1, exclusively expressed
by aberrant cells and not by healthy cells. Because of HLA restrictions, there are many
combinations of MHC-1 – peptide complexes as well as of MHC-2 – peptide complexes
that can be designed based on the rules for presentation of peptides in MHC. These rules
include size limits on peptides that can be presented in the context of MHC, restriction
sites that need to be present for processing of the antigen in the cell, anchor sites that
need to be present on the peptide to be presented, etc. The exact rules differ for the
different HLA classes and for the different MHC classes. We have found that MAGE
derived peptides are very suitable for presentation in an MHC context. An MHC-1
presentable antigenic peptide with the sequence Y-L-E-Y-R-Q-V-P-G in MAGE-A
[SEQ-ID 3] was identified, that is present in almost every MAGE-A variant (multi MAGE
peptide) and that will be presented by one of the most prevalent MHC-1 alleles in the
Caucasian population (namely 201). A second MAGE peptide that is presented
by r MHC-1 allele y HLA-CW7) and that is present in many MAGE
ts, like for example MAGE-A2, -A3, -A6 and -A12, is E-G-D-C-A-P-E-E-K
[SEQ-ID 4]. These two combinations of MHC-1 and MAGE peptides together would
cover 80% of the Caucasian population. The same ch can be followed for other
MHC molecules, other HLA restrictions and other antigenic peptides derived from
tumor-associated ns. Relevant is that the chosen antigenic peptide to elicit the
response to must be presented in the context of an MHC molecule and recognized in that
context only. Furthermore, the antigenic peptide must be d from a iently
tumor specific antigen and the HLA restriction must occur in a relevant part of the
tion. One of the important advantages of the present invention is that tumors that
down regulate their targeted MHC-peptide complex, can be treated with a second
immunoglobulin comprising at least one variable region binding to a different MHC-
peptide complex based on the same antigen. If this one is down regulated a third one will
be available. For heterozygotes six different targets on MHC-1 may be available. Since
cells need to be “inspected” by the immune system from time to time, escape through
down regulation of all MHC molecules does not seem a viable escape route. In the case
that MAGE is the antigen from which the peptide is derived escape through down
regulation of the antigen is also not possible, because MAGE seems important for
survival of the tumor [8]. Thus the present invention, in an important aspect reduces or
even prevents escape of the tumor from the therapy. Thus the invention provides in a
red embodiment an dy of the invention y the immunoglobulin
variable region is e of g to an MHC-I – peptide complex. In a further
preferred ment the ion provides an immunoglobulin whereby the
immunoglobulin variable region is capable of binding to MHC-I – peptide complexes
comprising an antigenic peptide derived from a tumor related antigen, in particular
MHC-I – peptide complexes sing an antigenic peptide present in a variety of
MAGE ns, whereby the immunoglobulin is provided with a toxic moiety.
e in one embodiment the invention uses MHC molecules as a target, and
individuals differ in the availability of MHC targets, the invention also provides a socalled
companion diagnostic to determine the HLA composition of an individual.
Although the invention preferably uses a more or less universal (MAGE) peptide, the
invention also provides a diagnostic for determining the expression of the particular
antigen by the tumor. In this manner the therapy can be geared to the patient
(personalized medicine, patient stratification), particularly also in the set-up to prevent
escape as bed herein before. It is known that the HLA restriction ns of the
Asian population and the black population are different from the Caucasian population.
For different populations different MHC-peptide complexes can be targeted.
Although the present specification presents more specific disclosure on tumors, it must
be tood that other aberrant cells can also be ed by the antibodies of the
t invention. These other aberrant cells are typically cells that also proliferate
without sufficient control. This occurs in autoimmune diseases. It is typical that these
cells start to show expression of tumor antigens. In particular MAGE polypeptides have
been identified in rheumatoid arthritis [7].
In literature it is shown that a single nine amino-acid (A.A.) peptide present in MAGEA2
, -A3, -A4, -A6, -A10, and -A12 is presented by HLA-A0201 on tumor cells, and can
be ized by cytotoxic T-lymphocytes [1]. This nine amino acid residues peptide
with sequence Y-L-E-Y-R-Q-V-P-G [SEQ-ID 3] is almost identical to the HLA-A0201
presented MAGE-A1 peptide Y-L-E-Y-R-Q-V-P-D [SEQ-ID 5], except for the anchor
residue at position 9. ement of the anchor residue with Valine results in a 9 amino
acid residues peptide with enhanced binding capacity to HLA-A0201 les [1].
Human and mouse T-lymphocytes recognizing the Y-L-E-Y-R-Q-V-P-V [SEQ-ID 6]
peptide presented by HLA-0201 also recognize the original MAGE-A Y-L-E-Y-R-Q-VP-G
and Y-L-E-Y-R-Q-V-P-D peptides presented on tumors of distinct origin. As e
tumors may each express at least one MAGE-A gene, targeting of this so-called multi-
MAGE-A epitope includes the vast majority of tumors. As an e, MAGE-A
expression in human prostate tumor cell lines and in human xenographs was ed
and shown to be highly diverse, but in each individual sample tested at least one MAGEA
gene was expressed (Table 2), confirming that ing this multi-MAGE-A epitope
serves as a universal HLA-A0201 restricted target for therapy.
Of course several other multi-MAGE or target epitopes may be designed. In
ple the invention contemplates combinations of tumor specific antigen derived
MHC presented epitopes in different HLA restrictions of both MHC-I and MHC-II,
targeted by immunoglobulins linked to a toxic moiety, to induce apoptosis in aberrant
cells. Examples of MHC - MAGE peptide co mbinations that can be targeted by
antibodies of the invention are peptide IMPKAGLLI (MAGE-A3) [SEQ-ID 8] and HLADP4
or peptide 243-KKLLTQHFVQENYLEY-258 (MAGE-A3) [SEQ-ID 9] and HLA-
DQ6. Other non-limiting examples of tumor specific complexes of HLA and antigen
peptide are: HLA A1 – MAGE-A1 peptide EADPTGHSY [SEQ-ID 10], HLA A3 –
MAGE-A1 SLFRAVITK [SEQ-ID 11], HLA A24 – MAGE-A1 PEI [SEQ-ID
12], HLA A28 – MAGE-A1 EVYDGREHSA [SEQ-ID 13], HLA B37 – MAGEA1
/A2/A3/A6 REPVTKAEML [SEQ-ID 14], expressed at aberrant cells related to
ma, breast carcinoma, SCLC, sarcoma, NSCLC, colon carcinoma (Renkvist, N.
et al., Cancer Immunol. ther. (2001) V50:3-15 (ref. 13)). Further examples are
HLA B53 – MAGE-A1 DPARYEFLW [SEQ-ID 15], HLA Cw2 – MAGE-A1
SAFPTTINF [SEQ-ID 16], HLA Cw3 – MAGE-A1 SAYGEPRKL [SEQ-ID 17], HLA
Cw16 – MAGE-A1 SAYGEPRKL D 18], HLA A2 – MAGE A2 KMVELVHFL
[SEQ-ID 19], HLA A2 – 2 YLQLVFGIEV [SEQ-ID 20], HLA A24 – MAGEA2
EYLQLVFGI [SEQ-ID 21], HLA-A1 – MAGE-A3 EADPIGHLY [SEQ-ID 22],
HLA A2 – MAGE-A3 FLWGPRALV [SEQ-ID 23], HLA B44 – MAGE-A3
MEVDPIGHLY [SEQ-ID 24], HLA B52 – MAGE-A3 WQYFFPVIF [SEQ-ID 25],
HLA A2 – MAGE-A4 EHTV [SEQ-ID 26], HLA A34 – MAGE-A6
MVKISGGPR [SEQ-ID 27], HLA A2 – MAGE-A10 GLYDGMEHL [SEQ-ID 28],
HLA Cw7 – MAGE-A12 VRIGHLYIL [SEQ-ID 29], HLA Cw16 – BAGE
AARAVFLAL [SEQ-ID 30], expressed by for example melanoma, bladder carcinoma,
NSCLC, sarcoma, HLA A2 – DAM-6/-10 FLWGPRAYA [SEQ-ID 31], expressed by
for example skin tumors, lung carcinoma, ovarian carcinoma, mammary carcinoma,
HLA Cw6 – GAGE-1/-2/-8 YRPRPRRY [SEQ-ID 32], HLA A29 – GAGE-3/-4/-5/-6/-
7B YYWPRPRRY D 33], both expressed by for example melanoma, ia
cells, bladder carcinoma, HLA B13 – NA88-A FLQKV D 34],
expressed by melanoma, HLA A2 – NY-ESO-1 SLLMWITQCFL D 35], HLA
A2 – NY-ESO-1a SLLMWITQC [SEQ-ID 36], HLA A2 - NY-ESO-1a QLSLLMWIT
[SEQ-ID 37], HLA A31 – NY-ESO-1a ASGPGGGAPR [SEQ-ID 38], the latter four
expressed by for example melanoma, sarcoma, B-lymphomas, te oma,
ovarian carcinoma, bladder carcinoma.
The invention is further exemplified by the non-limiting Examples provided below.
Abbreviations used
A.A., amino acid; Ab, antibody; 2-M, CDR, complementarity determining region;
CHO, Chinese r ovary; CT, cancer testis antigens; CTL, cytotoxic T-lymphocyte;
E4orf4, adenovirus early region 4 open g frame; EBV, Epstein-Barr virus; ELISA,
enzyme linked immunosorbent assay; HAMLET, human α-lactalbumin made lethal to
tumor cells; HEK, human embryonic kidney; HLA, human leukocyte antigen; Ig,
immunoglobulin; i.v., intravenously; kDa, kilo Dalton; MAGE, melanoma-associated
antigen; Mda-7, melanoma differentiation-associated gene-7; MHC, major
histocompatibility complex; MHC-p, MHC-peptide; NS1, parvovirus-H1 derived non-
structural protein 1; PBSM, PBS containing 2% non-fat dry milk; TCR, T-cell receptor;
VH, Vh or VH, amino-acid sequence of an immunoglobulin variable heavy domain; Vl,
amino-acid sequence of an immunoglobulin variable light domain; TRAIL, tumor
is factor-related sis-inducing ligand.
Examples.
EXAMPLE 1
Non-exhaustive examples of immunoglobulins of the invention comprising at least an
immunoglobulin variable region that specifically binds to an MHC-peptide complex
entially ated with aberrant cells or to an aberrant cell surface marker
preferentially associated with aberrant cells, with domain gies as outlined for
example in Figure 5B, are:
Antibodies of the invention comprising immunoglobulin variable s that
specifically bind to
a. a complex comprising a T-cell epitope selected from 146-KLQCVDLHV-154
[SEQ-ID 74], TPKKLQCV-150 [SEQ-ID 75], 154-VISNDVCAQV-163
[SEQ-ID 76], 154-YISNDVCAQV-163 D 77] of PSA, ted by
HLA-A2 and/or 162-QVHPQKVTK-170 [SEQ-ID 78] of PSA, presented by
, and/or 152-CYASGWGSI-160 [SEQ-ID 79], 248-HYRKWIKDTI-
257 [SEQ-ID 80] of PSA, presented by HLA-A24, and/or 4-LLHETDSAV-12
[SEQ-ID 81], 711-ALFDIESKV-719 [SEQ-ID 82], 27-VLAGGFFLL-35 [SEQID
83] of PSMA, presented by HLA-A2, and/or 178-NYARTEDFF-186 [SEQID
84], 227-LYSDPADYF-235 [SEQ-ID 85], SVSFDSL-632 [SEQ-ID
86] of PSMA, presented by HLA-A24, and/or 299-ALDVYNGLL-307 [SEQID
87] of PAP, presented by HLA-A2 and/or 213-LYCESVHNF-221 [SEQ-ID
88] of PAP, presented by HLA-A24 and/or 199-GQDLFGIWSKVYDPL-213
[SEQ-ID 89], 228-TEDTMTKLRELSELS-242 [SEQ-ID 90] of PAP, presented
by MHC-2 and/or 14-ALQPGTALL-22 [SEQ-ID 91], 105-AILALLPAL-113
[SEQ-ID 92], 7-ALLMAGLAL-15 [SEQ-ID 93], 21-LLCYSCKAQV-30
[SEQ-ID 94] of PSCA, presented by HLA-A2 and/or 155-
LLANGRMPTVLQCVN-169 [SEQ-ID 95] of Kallikrein 4, presented by
DRB1*0404 and/or 160-RMPTVLQCVNVSVVS-174 [SEQ-ID 96] of
Kallikrein 4, presented by DRB1*0701 and/or 125-SVSESDTIRSISIAS-139
D 97] of erein 4, presented by 401, for the treatment of
prostate cancer;
b. the HLA B8 restricted epitope from EBV nuclear antigen 3, FLRGRAYGL
[SEQ-ID 98], complexed with MHC I, for the clearance of EBV infected cells;
c. the MAGE-A peptide YLEYRQVPG presented by MHC 1 HLA-A0201, for
treatment of cancers accompanied by tumor cells expressing these MHC-peptide
complexes (see Table 1);
d. the MAGE-A peptide EGDCAPEEK presented by MHC-1 HLA-CW7, for
treatment of cancers anied by tumor cells expressing these MHC-peptide
complexes (see Table 1);
e. complexes of HLA-A2 and HLA-A2 restricted CD8+ T-cell epitopes, e.g.
nonamer peptides FLFLLFFWL [SEQ-ID 99] (from prostatic acid phosphatase
(PAP, also prostatic specific acid phosphatase (PSAP))), TLMSAMTNL [SEQID
100] (from PAP), ALDVYNGLL [SEQ-ID 101] (from PAP), human HLA-
A2.1-restricted CTL epitope ILLWQPIPV [SEQ-ID 102] (from PAP-3), sixtransmembrane
epithelial antigen of prostate ), or complexes of HLAA2.1
and HLA-A2.1-restricted CTL epitope LLLGTIHAL [SEQ-ID 103] (from
3), epitopes from mucin (MUC-1 and MUC-2), 32mer
(CHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPA [SEQ-ID 104]), es
from Globo H, , Tn(c), TF(c) clusters, GM2, prostate-specific membrane
antigen (PSMA), kallikrein 4, prostein, or complexes of HLA-A2.1 and HLAA2.1-restricted
epitopes from BA46, PTH-rP, HER-2/neu, hTERT, and MAGEA8
, for the treatment of prostate cancer;
f. an aberrant cell specific epitope in aberrant cell-specific altered MUC-1
complexed with MHC, or to an aberrant cell specific e in aberrant cellspecific
altered MUC-1 for, the targeting of nt cells in for example breast
cancer or for the treatment of colorectal cancer;
g. an aberrant cell specific e of the aberrant-cell specific epidermal growth
factor receptor mutant form vIII complexed with MHC, or to an aberrant cell
specific epitope of the epidermal growth factor receptor mutant form vIII, for the
treatment of the brain neoplasm glioblastoma multiforme;
h. the x of MHC with T-cell e peptide 369–376 from human Her-
2/neu, for the treatment of ancies related to Her-2 and/or Her-1 overexpression
i. an epitope of the aberrant-cell specific e marker CD44 splice variants
known as CD44-v6, CD44-v9, CD44-v10, complexed with MHC, or to an
aberrant cell specific epitope of an aberrant-cell specific CD44 splice variant,
for the treatment of multiple myeloma;
Target binding sites suitable for specific and ive targeting of infected aberrant cells
by antibodies of the invention are pathogen-derived antigen peptides xed with
MHC molecules. Examples of T-cell epitopes of the E6 and E7 protein of human
papilloma virus, complexed with indicated HLA molecules, are provided below. Any
combination of an HLA molecule complexed with a pathogen-derived T-cell epitope
provides a specific target on infected aberrant cells for antibodies of the ion. An
example of an infected aberrant cell is a keratinocyte in the cervix infected by human
papilloma virus (HPV), presenting T-cell epitopes derived from for example E6 or E7
protein, in the context of MHC. es of suitable target HPV 16 E6 T-cell es
are peptides FQDPQERPR [SEQ-ID 39], TTLEQQYNK [SEQ-ID 40], ISEYRHYCYS
[SEQ-ID 41] and QYNK [SEQ-ID 42] binding to HLA A1, KISEYRHYC
[SEQ-ID 43] and YCYSIYGTTL [SEQ-ID 44] binding to HLA A2, LLRREVYDF
[SEQ-ID 45] and IVYRDGNPY [SEQ-ID 46] g to HLA A3, TTLEQQYNK
[SEQ-ID 47] binding to HLA A11, CYSLYGTTL [SEQ-ID 48], KLPQLCTEL [SEQID
49], HYCYSLYGT [SEQ-ID 50], LYGTTLEQQY [SEQ-ID 51], EVYDFAFRDL
[SEQ-ID 52] and VYDFAFRDLC [SEQ-ID 53] binding to HLA A24, 29-
TIHDIILECV-38 [SEQ-ID 54] binding to HLA A*0201. Equally suitable are HPV 16
E7 T-cell epitopes such as 86-TLGIVCPI-93 [SEQ-ID 55], 82-LLMGTLGIV-90 [SEQID
56], 85-GTLGIVCPI-93 [SEQ-ID 57] and 86-TLGIVCPIC-94 [SEQ-ID 58] binding
to HLA A*0201, HPV 18 E6 T-cell epitopes and HPV 18 E7 T-cell es, binding to
HLA A1, A2, A3, A11 or A24. Yet additional examples of T-cell epitopes related to
HPV infected cells are HPV E7 derived peptides 1-MHGDTPTLHEYD-12 [SEQ-ID 59],
48-DRAHYNIVTFCCKCD-62 [SEQ-ID 60] and 62-DSTLRLCVQSTHVD-75 [SEQID
61] binding to HLA DR, 7-TLHEYMLDL-15 D 62], 11-YMLDLQPETT-20
[SEQ-ID 63], DLQPET-19 [SEQ-ID 64] and 12-MLDLQPETT-20 [SEQ-ID
65] binding to HLA A*201, TTDLYCY-25 D 66], 44-QAEPDRAHY-52
[SEQ-ID 67] and 46-EPDRAHYNIV-55 [SEQ-ID 68] binding to HLA B18, 35-
EDEIDGPAGQAEPDRA-50 [SEQ-ID 69] binding to HLA DQ2, 43-
GQAEPDRAHYNIVTFCCKCDSTLRLCVQSTHVDIR-77 [SEQ-ID 70] binding to
HLA DR3, 50-AHYNIVTFCCKCD-62 D 71] binding to HLA DR15, 58-
CCKCDSTLRLC-68 [SEQ-ID 72] binding to HLA DR17 and 61-
CDSTLRLCVQSTHVDIRTLE-80 [SEQ-ID 73] binding to B1*0901.
A good source for selecting binding sites suitable for specific and selective targeting of
nt cells by antibodies of the invention, is the Peptide Database g T-cell
defined tumor antigens and the HLA’s binding the T-cell epitopes [9-12;
ncerimmunity.org/peptidedatabase/Tcellepitopes.htm]. The database provides
combinations of antigen es complexed with MHC molecules comprising the
indicated class of HLA, unique to tumor cells or over-expressed by tumor cells.
EXAMPLE 2: Selection of human antibody fragments specific for HLAA0201
/multi-MAGE-A.
To obtain human antibody nts comprising immunoglobulin variable regions
specific for the HLA-A0201 presented MAGE-A epitope Y-L-E-Y-R-Q-V-P-V
[SEQ-ID 6] and FLWGPRALV [SEQ-ID 23] a Human Fab phage display library was
constructed according to the procedure previously described by de Haard et al (2) and
used for selections 1) essentially as described by Chames et al using biotinilated MHC/p
complexes (3), or 2) on cells expressing the relevant antigen.
2.1: selection of human antibody fragments specific for HLA-A0201/YLEYRQVPV using
biotinilated MHC-peptide complexes:
Human Fab phages (1013 colony forming units) were first pre-incubated for 1 h at room
temperature in PBS containing 2% non-fat dry milk (PBSM). In parallel, 200 l
Streptavidin-coated beads (Dynal™) were equilibrated for 1 h in PBSM. For subsequent
rounds, 100 l beads were used. To deplete for pan-MHC binders, each selection round,
200 nM of biotinylated MHC class I-peptide (MHC-p) complexes containing an
irrelevant peptide (Sanquin, the Netherlands) were added to the phages and incubated for
minutes under rotation. brated beads were added, and the mixture was incubated
for 15 minutes under rotation. Beads were drawn to the side of the tube using magnetic
force. To the depleted phage fraction, subsequently decreasing s of ylated
MHC-p complexes (200 nM for the first round, and 20 nM for the second and third round)
were added and incubated for 1 h at room temperature, with continuous rotation.
Simultaneously, a pan-MHC class I binding soluble Fab (D3) was added to the phage-
MHC-p complex mixture (50, 10, and 5 µg for rounds 1-3 respectively). Equilibrated
streptavidin-coated beads were added, and the mixture was incubated for 15 minutes
under rotation. Phages were selected by magnetic force. Non-bound phages were
removed by 5 washing steps with PBSM, 5 steps with PBS containing 0.1% Tween, and
steps with PBS. Phages were eluted from the beads by 10 s incubation with 500
l freshly prepared tri-ethylamine (100 mM). The pH of the solution was lized by
the addition of 500 l 1 M Tris (pH 7.5). The eluted phages were incubated with
logarithmic growing E. Coli TG1 cells (OD600nm of 0.5) for 30 minutes at 37C. Bacteria
were grown overnight on 2x TYAG plates. Next day, colonies were harvested, and a 10
l inoculum was used in 50 ml 2x TYAG. Cells were grown until an m of 0.5, and
5 ml of this suspension was ed with M13k07 helper phage (5x1011 colony g
units). After 30 s incubation at 37C, the cells were centrifuged, resuspended in
ml 2x TYAK, and grown overnight at 30C. Phages were collected from the culture
supernatant as described previously, and were used for the next round panning. After
three selection rounds a 261-fold enrichment was obtained, and 46 out of 282 analyzed
clones were shown to be specific for the HLA-A2-multi-MAGE-A complex (Figure 1).
ELISA using the HLA-A0201/multi-MAGE-A xes as well as HLA-A0201
complexes with a peptide derived from JC virus was used to determine the icity of
the selected Fab.
2.2: Selection of human Fab specific for HLA-A0201/FLWGPRALV using cells.
ions of Fab-phages specifically binding to HLA-A0201/FLWGPRALV were performed
using mouse CMT64 lung tumor cells. To obtain CMT64 cells stably expressing HLAA0201
/FLWGPRALV (A2/FLW) complexes, the CMT64 cells were retroviral infected with a
vector encoding a single chain peptide-?2M-HLA-A0201 heavy chain construct [SEQ ID 105].
Human Fab phages (1013 colony forming units) were first pre-incubated for 1 h at room
temperature in PBS containing 2% FCS (PBSF). In parallel, 1.0x106 CMT64-A2/FLW cells were
equilibrated for 1 h in PBSF. The phages were first incubated for one hour with 10x106 CMT 64
cells expressing HLA-A0210/ YLEYRQVPG to deplete non-specifically binding phages. The
non-bound on was then incubated (1 hr at 4oC) with 201/FLWGPRALV
expressing CMT64 cells. After extensive washing, bound phages were eluted by adding 500 l
freshly prepared tri-ethylamine (100 mM). The pH of the solution was neutralized by the addition
of 500 l 1 M Tris (pH 7.5). The eluted phages were ted with logarithmic growing E. Coli
TG1 cells (OD600nm of 0.5) for 30 minutes at 37C. ia were grown overnight on 2x TYAG
plates. Next day, colonies were harvested. After four rounds of selection individual clones were
selected and tested for icity of binding.
2.3: Human Fab specific for HLA-A0201/multi-MAGE-A epitopes bind antigen
ve cells.
Multi-MAGE-A; Y-L-E-Y-R-Q-V-P-V
Fab phages were analyzed for their capacity to bind HLA-A0201 positive EBV-
transformed B-LCL loaded with the multi-MAGE-A peptide Y-L-E-Y-R-Q-V-P-V. The
B-LCL line BSM (0.5x106) was loaded with multi-MAGE-A peptide (10 g in 100 l
PBS) for 30 minutes at 37C, followed by incubation with the Fab phages AH5, CB1,
CG1, BD5 and BC7 and ed by flow-cytometry. As shown in Figure 2, Fab AH5,
CB1 and CG1, specifically bound to the peptide loaded cells only, whereas Fab BD5 and
BC7 displayed non-specific g to BSM that was not loaded with the multi-MAGEA
peptide. No g was observed by AH5, CB1 and CG1 to non-peptide loaded cells.
Phages presenting AH5, CB1 and CG1, as well as the HLA-A0101/MAGE-A1 specific
Fab phage G8 (4) were then used to stain tumor cell lines of distinct histologic origin. To
this end prostate cancer cells (LNCaP), multiple myeloma cells (MDN), melanoma cells
(MZ2-MEL43 and G43), and breast cancer cells (MDA-MB157) were stained and
analyzed by flow cytometry (Figure 3). The Fab AH5 specifically bound multiple
myeloma cells MDN, and not the HLA-A0201 negative ma and breast cancer
cells. Both CB1 and CG1 displayed non-specific binding on the melanoma cell line G43.
The positive control Fab G8 demonstrated binding to all cell lines tested.
Multi-MAGE-A: F-L-W-G-P-R-A-L-V
To ine the inding capacity of the HLA-A0201/ FLWGPRALV selected Fab clone
F9 soluble Fab fragments were made by induction of TG-1 bacteria. TG-1 containing 9
were grown until OD=0,8 and Fab production was induced by addition of 1 mM IPTG. After 13
hours induction the bacterial periplasmic fraction was isolated and dialyzed overnight. Next day
soluble Fab F9 fragments were purified by IMAC.
Purified Fab F9 was added to 0,5x106 CMT 64 cells sing either HLA-A0210/
YLEYRQVPG, HLA-A0201/ FLWGPRALV, or CMT 64 cells that do not s human HLA.
As shown in Figure 6 the Fab clone F9 specifically binds HLA-A0201/ FLWGPRALV
expressing CMT64 cells and not CMT 64 cells that do not express human HLA or that do express
the irrelevant HLA-A0201/ YLEYRQVPG molecules.
2.4: Fab AH5 binds HLA-A0201/multi-MAGE-A complexes only.
ELISA using multiple peptide/MHC complexes then confirmed the specificity of Fab-
AH5. To this end 201 complexes presenting peptides multi-MAGE-A, gp100,
JCV and MAGE-C2, as well as a HLA-A1/MAGE-A1 complex were immobilized on 96
well plates and incubated with phages displaying Fab AH5 and l Fab G8. As shown
in Figure 4, AH5 only binds 201/multi-MAGE-A and not the irrelevant
complexes HLA-A0201/gp100, HLA-A0201/MAGE-C2, HLA-A0201/JCV and HLAA0101
/MAGE-A1. The positive control Fab G8 only binds to its relevant target HLAA0101
/MAGE-A1.
The nucleic acids encoding for the HLA-A0201 – multi-MAGE-A complex binding Fab
AH5 will be combined with nucleic acids encoding for human antibody Ch2-Ch3
domains, providing nucleic acid molecules ng for a human antibody light chain
encompassing the selected Cl-Vl encoding nucleic acids and encoding for a human
antibody heavy chain encompassing the selected Ch-Vh encoding nucleic acids. These
nucleic acid molecules encoding the d immunoglobulin will be introduced, via a
plasmid or via an expression vector, into a eukaryotic host cell such as a CHO cell. After
expression of the immunoglobulin, it will be isolated from the cell culture and purified.
Then, a selected toxic moiety will be linked to the immunoglobulin, for example using
Universal Linkage System linker chemistry.
Example 3. Cell binding and internalization of an immunoglobulin provided with a
toxic .
Binding capacity of an antibody of the invention is analyzed by flow-cytometry. For
example, an antibody sing immunoglobulin variable regions specific for
complexes of HLA-A0201 and the multi-MAGE-A peptide is analysed. HLA-
A0201/multi-MAGE-A positive tumor cells (Daju, MDN and mel 624) and HLAA0201
-MAGE-A negative cells (BSM, G43 and 293) are incubated on ice with
purified antibody and detected by addition of fluorescently labeled antibodies. Cells
bound by the antibody are quantified and visualized by flow-cytometry. alisation
of antibody is ed by al microscopy. To this end cells are incubated with the
antibody, kept on ice for 30 minutes to allow binding but no internalization. Next,
fluorescently labeled antibodies specific for the antibody are added. To induce
internalization cells are transferred to 37oC and fixed with 1% PFA after 5, 10 and 15
minutes.
Example 4: Apoptosis induction by antibodies of the invention in e tumor
cells.
4.1: killing of diverse tumor cells by immunoglobulin provided with a toxic
Antibodies of the ion are analyzed for their capacity to induce apoptosis by
incubation with diverse tumor cells, known to express the antigens comprising the
binding sites for the globulin variable regions. For example, an antibody
comprising immunoglobulin variable region VH specific for complexes of HLA-A0201
and the MAGE-A peptide, AH5-BTX, is coupled to a synthetic HPMA polymer
ning the BTX peptide and Doxorubicin (as we described in WO2009131435) and
analyzed. To this end antibodies of the invention coupled to doxorubicin are analyzed
for their capacity to induce apoptosis by incubation with diverse tumor cells known to
express both HLA-A0201 and MAGE-A genes. The ines Daju, Mel 624
(melanoma), PC346C (prostate cancer), and MDN (multiple myeloma) as well as
MAGE-A negative cells (911 and HEK293T) are incubated with ent concentrations
of the antibodies of the invention (in DMEM medium, supplemented with pen/strep,
Glutamine and non-essential amino acids). Several hours later, cells are visually
inspected for cal signs of apoptosis such as detachment of the cells from tissue
culture plates and membrane blebbing. In addition, cells are stained for active caspase-3
to trate apoptosis. It is excepted that the antibodies of the invention induce
apoptosis in the Daju Mel 624, PC346C and MDN cells. Cells that are not treated with
the antibodies of the invention are not ed, as well as cells that do not express 01
(HEK293T) and MAGE-A genes (911 and HEK293T).
r antibody, comprising Vh and Vl domains (scFv) with specificity for complexes
of HLA-A01, presenting a MAGE-A1 peptide was also analyzed. The TX
construct was coupled to the HPMA r containing doxorubicin and incubated with
MAGE-A1 positive and MAGE-A1 negative cells. Apoptosis is shown by staining for
active caspase-3.
4.2: ion of active caspase-3.
A classical intra-cellular hallmark for apoptosis is the ce of active caspase-3. To
determine whether or not the antibodies of the invention induce active caspase-3, Daju,
Mel624 and MDN cells are ted with various concentrations of antibodies of the
invention. After four and 13 hours FAM –DEVD-FMK, a fluorescently caspase-3/7
inhibitor, is added and positively stained cells are visualized by fluorescent microscopy
and flow-cytometry. Caspase-3 activity is shown in antigen positive cells and not in
antigen negative cells, with the (fragment of the) antigen providing the specific target-
binding site for the antibodies of the invention.
4.3 Treatment of tumor bearing mice with immunoglobulins provided with a toxic
moiety.
Nude mice cid, 8 per group) with a palpable subcutaneous transplantable human
tumor (Daju or MDN) are injected with ent doses of immunoglobulins provided
with a toxic moiety. As a control mice are d with standard chemotherapy or receive
an ion with PBS. Mice receiving an optimal dose of the immunoglobulins provided
with a toxic moiety survive significantly longer that those mice receiving chemotherapy
or PBS, when the aberrant cells expose the target binding sites for the antibodies of the
invention.
Example 5: selection of llama VHH with specificity for HLA-A0201/ FLWGPRALV and
HLA-A0201/ YLEYRQVPG.
ion of Llama VHH fragments with specificity for HLA-A0201/ ALV (A2/FLW)
and HLA-A0201/YLEYRQVPG (A2/YLE) were performed on CMT64 cells stably expressing
these HLA/peptide xes. Llama VHH phages (1011 colony forming units) were first preincubated
for 1 h at room temperature in PBS containing 2% FCS (PBSF). In parallel, 1.0x106
CMT64-A2/FLW and 1.0x106 CMT64 A2/YLE cells were equilibrated for 1 h in PBSF. To
deplete for non-specific binding phages 10x106 CMT 64 cells expressing either A2/FLW or
A2/YLE were incubated for one hour with the llama VHH. The non-bound fractions were then
incubated (1 hr at 4oC) with A2/FLW or A2/YLE expressing CMT64 cells. After extensive
washing, bound phages were eluted by adding 500 l freshly prepared tri-ethylamine (100 mM).
The pH of the solution was neutralized by the addition of 500 l 1 M Tris (pH 7.5). The eluted
phages were incubated with logarithmic growing E. Coli TG1 cells (OD600nm of 0.5) for 30
minutes at 37C. Bacteria were grown overnight on 2x TYAG plates. Next day, colonies were
harvested. After four rounds of selection individual clones were selected and tested for icity
of binding.
.2: Llama VHH specific for HLA-A0201/multi-MAGE-A epitopes bind antigen positive
cells.
To determine the cell-binding capacity of the A2/FLW and A2/YLE selected VHH soluble VHH
fragments were made by induction of TG-1 bacteria. TG-1 ning pHen-VHH were grown
until OD=0,8 and Fab production was induced by addition of 1 mM IPTG. After 13 hours
induction the bacterial periplasmic fraction was isolated and dialyzed overnight. Next day
soluble VHH fragments were purified by IMAC.
CMT 64 cells (0,5x106) expressing either HLA-A0210/ YLEYRQVPG, HLA-A0201/
FLWGPRALV, or CMT 64 cells that do not express human HLA were incubated with purified
VHH fragments for one hour at 4oC. As shown in Figure 7 the A2/FLW specific VHH bind HLAA0201
/ FLWGPRALV expressing CMT64 cells and not CMT 64 cells that do not express
human HLA or that do express the irrelevant HLA-A0201/ YLEYRQVPG molecules. The
A2/YLE ic VHH only bind /YLEYRQVPG expressing CMT64 cells and not
A2/FLW positive CMT64 cells and CMT64 cells that do not express human HLA.
References
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Table 1: Examples of the frequency of MAGE-A expression by human cancers.
Frequency of expression (%)
Cancer MAG MAG MAG MAG MAG MAG MAG
E-A1 E-A2 E-A3 E-A4 E-A6 E-A10 E-A11
Melanoma 16 E 36 E 64 E 74
Head and neck 25 42 33 8 N N N
Bladder 21 30 35 33 15 N 9
Breast 6 19 10 13 5 N N
Colorectal N 5 5 N 5 N N
Lung 21 30 46 11 8 N N
Gastric 30 22 57 N N N N
Ovarian 55 32 20 E 20 N N
Osteosarcoma 62 75 62 12 62 N N
hepatocarcino 68 30 68 N 30 30 30
Renal cell 22 16 76 30 N N N
carcinoma
E, expressed but the frequency is not known; N, expression by tumors has never been
observed
Table 2: MAGE-A sion in human te cancer cell lines and prostate
cancer xenografts.
MAGECell
line / A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 A11 A12
Xenograft
LNCaP + ++ ++ ++ +
PC346C + ++ ++ + ++ + + ++
OVCAR + + + +
JON ++ ++ ++ + +
PNT 2 C2 + + + + +
SD48 + + + +
PC-3 + + +
PC 374 +
PC 346p + ++ ++ ++ + ++ +
PC 82 + +
PC 133 ++ + +
PC 135 +
PC 295 +
PC 324 + + +
PC 310 + ++ + ++ +
PC 339 ++ ++ + ++ + + +
Expression of the MAGE-A1, A2, A3, A4, A5, A6 ,A7, A8, A9, A10, A11 and A12
genes in diverse prostate tumor cell lines and prostate xenografts was analysed by RTPCR.
Shown are expression levels in individual samples tested. Blank= no expression,
+ = low expression, ++ = high sion.
All cell lines / xenografts express at least one MAGE-A gene.
Figure legends
Figure 1: Specific binding of HLA-A0201/multi-MAGE-A specific phage clones
isolated from a large human non-immune antibody Fab phage library. Individual
antibody Fab expressing phages that were selected against biotinylated HLAA0201
/multi-MAGE-A were analysed by ELISA for their capacity to bind the relevant
peptide/MHC complex only. Streptavidin coated 96 well plates were ted with
soluble HLA-A0201/multi-MAGE-A (A2/multiMage) or HLA-A0201/JCV (A2/JC)
e/MHC xes (10 µg/ml), washed to remove non-bound complexes and
incubated with individual phage . Non-binding phages were first removed by three
washes with PBS/Tween, followed by incubation with anti-M13 antibody (1 µg/ml,
Amersham) for one hour by room temperature. Finally the wells were ted with an
HRP-labeled secondary antibody and bound phages detected.
Figure 2: Phages AH5, CB1 and CG1 specifically bind cells presenting the multi-
MAGE-A peptide. Phages AH5, CB1, CG1, BD5 and BC7 that had shown specific
binding in ELISA using the relevant 01/multi-MAGE-A complex and an
irrelevant HLA-A201 x loaded with a JCV peptide were analysed for their
capacity to bind cells presenting the multi-MAGE-A peptide in HLA-A0201 molecules.
To this end, human B-LCL (BSM) were loaded with multi-MAGE-A e (10 g in
100 l PBS) for 30 minutes at 37C, followed by tion with the Fab phages AH5,
CB1, CG1, BD5 and BC7 and analyzed by flow-cytometry using anti-phage antibodies
and a fluorescently labeled secondary antibody.
Figure 3: Phages expressing HLA-A2/multi-MAGE-A specific Fab bind tumor cells
of distinct histologic . Phages AH5, CB1 and CG1 specific for HLAA0201
/multi-MAGE-A and a positive control phage specific for HA-0101/MAGE-A1
were used for staining of ct tumor cell lines. To this end the prostate cancer cell line
LNCaP, the multiple myeloma cell line MDN, the melanoma cell lines MZ2-MEL43 and
G43, and the breast cancer cell line MDA-MD157 were incubated with the different
phages (30 minutes at 4C), bound phages were then detected by flow cytometry using
anti-phage antibodies and fluorescently labeled secondary antibodies.
Figure 4: Phage AH5 specifically binds HLA-A0201/multi-MAGE-A xes
only. To determine icity of the phage AH5 an ELISA was performed using relevant
and irrelevant peptide/MHC complexes. HLA-A0201 with multi-MAGE-A, gp100, JCV
and MAGE-C2 peptides, as well as HLA-A1 with MAGE-A1 peptide were coated on
streptavidin 96 well plates and incubated with phage AH5.
Figure 5: Cartoon displaying examples of preferred immunoglobulins provided
with a toxic moiety, according to the ion.
A. Cartoon displaying the topology of the twelve immunoglobulin s assembled
in an immunoglobulin G. B. Examples are ed of preferred immunoglobulins
ed with a toxic moiety, according to the invention in which
I. is an IgG provided with a chemically linked toxic moiety and comprising a
variable region specific for a peptide derived from an intracellular specific
n and presented at the tumor cell surface in the context of MHC.
II. is a bi-specific IgG provided with a chemically linked toxic moiety and
comprising two different variable s specific for one or two peptides derived
from one or two intracellular tumor-specific protein(s) and ted at the tumor
cell surface in the context of MHC.
III. is an IgG provided with a toxic moiety linked through a peptide linker
integrated via peptide bonds, and comprising a variable region specific for peptide
derived from an intracellular tumor-specific protein and presented at the tumor cell
surface in the context of MHC.
IV is a bispecific IgG provided with one heavy chain comprising a toxic moiety
linked through a peptide linker integrated by peptide bonds, and comprising two
different variable regions specific for one or two peptides derived from one or two
intracellular tumor-specific proteins(s) and presented at the tumor cell surface in
the context of MHC.
Thus shown are immunoglobulins ed with a single toxic moiety such as for
example a cytostatic agent, linked to the immunoglobulin with a chemical linker
(exemplified by I. and II.; immunoglobulin-toxic moiety conjugates), or
immunoglobulins provided with a single toxic moiety, linked to the immunoglobulin
with a peptide linker (exemplified by III.; fused immunoglobulin-toxic moiety
molecule). In IV., an immunoglobulin provided with a toxic moiety, according to the
invention, is shown, comprising one immunoglobulin heavy chain comprising a fused
proteinaceous toxic moiety, sing immunoglobulin variable regions specific for a
certain binding site, and comprising a second immunoglobulin heavy chain comprising
globulin le regions specific for a ent binding site. Of course, also part
of the invention are bi-specific immunoglobulins provided with a toxic moiety, according
to the ion, comprising two heavy chains comprising different immunoglobulin
variable regions specific for different binding sites and further comprising the same or
different proteinaceous toxic moieties fused two the heavy . Of course, as part of
the invention, more than one, and typically two to six toxic moiety molecules can be
fused or conjugated to an globulin molecule.
Figure 6: Human Fab phage F9 ically binds HLA-A2/ FLWGPRALV positive
CMT64 mouse lung tumor cells.
Human Fab clone F9 was analysed for its capacity to bind mouse lung tumor cells (CMT64)
stably expressing the HLA-A2/ FLWGPRALV complex. Purified Clone F9 Fab fragments (3
g total) were incubated with 0,5x106 CMT64 cells that do not express human HLA, that
express /YLEYRQVPG or that express HLA-A2/ FLWGPRALV. After one hour
tion on ice CMT64 cells were incubated with a fluorescently labeled secondary dy
and analysed by flow cytometry.
Figure 7: Llama VHH specifically binds CMT64 mouse lung tumor cells expressing
human HLA-A2/multi-MAGE-A.
Llama VHH specific for A2/FLW or A2/YLE were analysed by flow cytometry for their
binding capacity to CMT64 cells expressing these human HLA-A0201/multi-MAGE-A
complexes. Purified VHH fragments (3 g total) were incubated with 0,5x106 CMT64 cells,
that do not express human HLA, that express HLA-A2/YLEYRQVPG or that express HLAA2
/ FLWGPRALV. After one hour incubation on ice CMT64 cells were incubated with a
fluorescently labeled secondary antibody and analysed by flow cytometry.
In Figure 7A, the HLA-A0201/YLEYRQVPG specific nanobody is shown as binding to
CMT64 mouse cells expressing HLA-A0201 with covalently linked YLEYRQVPG MAGE-A
epitope. No binding to CMT64 cells expressing HLA0201 with the FLWGPRALV epitope
was seen.
In Figure 7B, the HLA-A0201/FLWGPRALV specific nanobody is shown as binding to
CMT64 mouse cells expressing HLA-A0201 with covalently linked ALV MAGE-A
epitope. No binding to CMR64 cells sing HLA0201 with the YLEYRQVPG epitope
was seen.
Sequence identifiers
SEQ-ID 1. Amino acid sequence Vh AH5
QLQLQESGGG VVQPGRSLRL SCAASGFTFS SYGMHWVRQA PGKEREGVAV
ISYDGSNKYY RFTI SRDNSKNTLY LQMNSLRAED TAVYYCAGGS
YYVPDYWGQG TLVTVSSGST SGS
SEQ-ID 3. Amino acid sequence MHC-1 HLA-A0201 table e in MAGE-A
YLEYRQVPG
SEQ-ID 4. Amino acid sequence MHC-1 HLA-CW7 table peptide in MAGE-A
EGDCAPEEK
SEQ-ID 5. Amino acid sequence MHC-1 HLA-A0201 presentable peptide in MAGE-
A1
YLEYRQVPD
SEQ-ID 6. Amino acid sequence MHC-1 HLA-A0201 presentable peptide in MAGEA1
, with enhanced binding capacity for HLA-A0201
YLEYRQVPV
SEQ-ID 7. Amino acid sequence Vh binding domain 11H
EVQLVQSGGG LVKPGGSLRL SCAASGFTFS DYYMSWIRQA WLSY
ISSDGSTIYY ADSVKGRFTV SRDNAKNSLS LQMNSLRADD TAVYYCAVSP
RGYYYYGLDL WGQGTTVTVS S
SEQ-ID 8, amino acid sequence of MAGE-A3 peptide epitope binding to HLA
IMPKAGLLI
SEQ-ID 9, amino acid sequence of MAGE-A3 peptide epitope binding to HLA
KKLLTQHFVQENYLEY
SEQ-ID 10, amino acid sequence of MAGE peptide e binding to HLA
EADPTGHSY
SEQ-ID 11, amino acid ce of MAGE peptide epitope binding to HLA
SEQ-ID 12, amino acid sequence of MAGE peptide epitope binding to HLA
NYKHCFPEI
SEQ-ID 13, amino acid sequence of MAGE peptide epitope binding to HLA
EVYDGREHSA
SEQ-ID 14, amino acid sequence of MAGE peptide epitope g to HLA
REPVTKAEML
SEQ-ID 15, amino acid sequence of MAGE peptide epitope binding to HLA
SEQ-ID 16 amino acid sequence of MAGE peptide epitope binding to HLA
SAFPTTINF
SEQ-ID 17, amino acid sequence of MAGE peptide epitope binding to HLA
SAYGEPRKL
SEQ-ID 18, amino acid sequence of MAGE peptide epitope binding to HLA
SAYGEPRKL
SEQ-ID 19, amino acid sequence of MAGE peptide epitope g to HLA
KMVELVHFL
SEQ-ID 20, amino acid sequence of MAGE peptide epitope binding to HLA
YLQLVFGIEV
SEQ-ID 21, amino acid sequence of MAGE peptide epitope binding to HLA
EYLQLVFGI
SEQ-ID 22, amino acid sequence of MAGE peptide epitope binding to HLA
EADPIGHLY
SEQ-ID 23, amino acid sequence of MAGE peptide epitope binding to HLA
FLWGPRALV
SEQ-ID 24, amino acid sequence of MAGE peptide epitope binding to HLA
MEVDPIGHLY
SEQ-ID 25, amino acid sequence of MAGE e epitope binding to HLA
WQYFFPVIF
SEQ-ID 26, amino acid sequence of MAGE peptide epitope binding to HLA
GVYDGREHTV
SEQ-ID 27, amino acid sequence of MAGE peptide e binding to HLA
MVKISGGPR
SEQ-ID 28, amino acid ce of MAGE peptide e binding to HLA
GLYDGMEHL
SEQ-ID 29, amino acid sequence of MAGE peptide epitope binding to HLA
VRIGHLYIL
SEQ-ID 30, amino acid sequence of BAGE peptide epitope binding to HLA
AARAVFLAL
SEQ-ID 31, amino acid sequence of DAM-6 and DAM-10 peptide epitope binding to
FLWGPRAYA
SEQ-ID 32, amino acid sequence of GAGE-1/-2/-8 peptide epitope binding to HLA
YRPRPRRY
SEQ-ID 33, amino acid ce of /-4/-5/-6/-7B peptide epitope binding to
HLA
YYWPRPRRY
SEQ-ID 34, amino acid sequence of NA88-A peptide epitope binding to HLA
MTQGQHFLQKV
SEQ-ID 35, amino acid sequence of NY-ESO-1 peptide epitope binding to HLA
SLLMWITQCFL
SEQ-ID 36, amino acid sequence of NY-ESO-1a e epitope binding to HLA
SLLMWITQC
SEQ-ID 37, amino acid sequence of NY-ESO-1a peptide epitope binding to HLA
QLSLLMWIT
SEQ-ID 38, amino acid sequence of -1a peptide epitope binding to HLA
ASGPGGGAPR
SEQ-ID 39, HPV 16 E6 T-cell e binding to HLA A1
FQDPQERPR
SEQ-ID 40, HPV 16 E6 T-cell epitope binding to HLA A1
TTLEQQYNK
SEQ-ID 41, HPV 16 E6 T-cell epitope binding to HLA A1
ISEYRHYCYS
SEQ-ID 42, HPV 16 E6 T-cell epitope binding to HLA A1
GTTLEQQYNK
SEQ-ID 43, HPV 16 E6 T-cell epitope g to HLA A2
KISEYRHYC
SEQ-ID 44, HPV 16 E6 T-cell epitope binding to HLA A2
YCYSIYGTTL
SEQ-ID 45, HPV 16 E6 T-cell epitope binding to HLA A3
LLRREVYDF
SEQ-ID 46, HPV 16 E6 T-cell epitope binding to HLA A3
IVYRDGNPY
SEQ-ID 47, HPV 16 E6 T-cell epitope binding to HLA A11
TTLEQQYNK
SEQ-ID 48, HPV 16 E6 T-cell epitope g to HLA A24
CYSLYGTTL
SEQ-ID 49, HPV 16 E6 T-cell epitope binding to HLA A24
SEQ-ID 50, HPV 16 E6 T-cell epitope binding to HLA A24
HYCYSLYGT
SEQ-ID 51, HPV 16 E6 T-cell epitope binding to HLA A24
LYGTTLEQQY
SEQ-ID 52, HPV 16 E6 T-cell epitope binding to HLA A24
EVYDFAFRDL
SEQ-ID 53, HPV 16 E6 T-cell epitope binding to HLA A24
VYDFAFRDLC
SEQ-ID 54, HPV 16 E6 T-cell epitope binding to HLA A*0201
29-TIHDIILECV-38
SEQ-ID 55, HPV 16 E7 T-cell epitope binding to HLA A*0201
86-TLGIVCPI-93
SEQ-ID 56, HPV 16 E7 T-cell epitope binding to HLA A*0201
82-LLMGTLGIV-90
SEQ-ID 57, HPV 16 E7 T-cell epitope binding to HLA A*0201
85-GTLGIVCPI-93
SEQ-ID 58, HPV 16 E7 T-cell epitope g to HLA A*0201
86-TLGIVCPIC-94
SEQ-ID 59, HPV E7 T-cell epitope binding to HLA DR
1-MHGDTPTLHEYD-12
SEQ-ID 60, HPV E7 T-cell epitope binding to HLA DR
48-DRAHYNIVTFCCKCD-62
SEQ-ID 61, HPV E7 T-cell epitope binding to HLA DR
62-DSTLRLCVQSTHVD-75
SEQ-ID 62, HPV E7 T-cell epitope binding to HLA A*201
YMLDL-15
SEQ-ID 63, HPV E7 T-cell e binding to HLA A*201
11-YMLDLQPETT-20
SEQ-ID 64, HPV E7 T-cell epitope binding to HLA A*201
11-YMLDLQPET-19
SEQ-ID 65, HPV E7 T-cell epitope binding to HLA A*201
12-MLDLQPETT-20
SEQ-ID 66, HPV E7 T-cell epitope binding to HLA B18
16-QPETTDLYCY-25
SEQ-ID 67, HPV E7 T-cell epitope binding to HLA B18
44-QAEPDRAHY-52
SEQ-ID 68, HPV E7 T-cell epitope binding to HLA B18
46-EPDRAHYNIV-55
SEQ-ID 69, HPV E7 T-cell epitope binding to HLA DQ2
35-EDEIDGPAGQAEPDRA-50
SEQ-ID 70, HPV E7 T-cell epitope binding to HLA DR3
43-GQAEPDRAHYNIVTFCCKCDSTLRLCVQSTHVDIR-77
SEQ-ID 71, HPV E7 T-cell epitope binding to HLA DR15
NIVTFCCKCD-62
SEQ-ID 72, HPV E7 T-cell epitope binding to HLA DR17
CDSTLRLC-68
SEQ-ID 73, HPV E7 T-cell epitope binding to HLA-DRB1*0901
61-CDSTLRLCVQSTHVDIRTLE-80
SEQ-ID 74, PSA T-cell epitope binding to HLA-A2
146-KLQCVDLHV-154
SEQ-ID 75, PSA T-cell epitope g to HLA-A2
141-FLTPKKLQCV-150
SEQ-ID 76, PSA T-cell epitope binding to HLA-A2
154-VISNDVCAQV-163
SEQ-ID 77, PSA T-cell e binding to HLA-A2
154-YISNDVCAQV-163
SEQ-ID 78, PSA T-cell epitope binding to HLA-A3
162-QVHPQKVTK-170
SEQ-ID 79, PSA T-cell epitope binding to HLA-A24
152-CYASGWGSI-160
SEQ-ID 80, PSA T-cell epitope binding to HLA-A24
248-HYRKWIKDTI-257
SEQ-ID 81, PSMA T-cell epitope binding to HLA-A2
4-LLHETDSAV-12
SEQ-ID 82, PSMA T-cell epitope binding to HLA-A2
711-ALFDIESKV-719
SEQ-ID 83, PSMA T-cell epitope binding to HLA-A2
27-VLAGGFFLL-35
SEQ-ID 84, PSMA T-cell epitope g to HLA-A24
178-NYARTEDFF-186
SEQ-ID 85, PSMA T-cell epitope binding to HLA-A24
SDPADYF-235
SEQ-ID 86, PSMA T-cell epitope binding to HLA-A24
624-TYSVSFDSL-632
SEQ-ID 87, PAP T-cell epitope binding to HLA-A2
299-ALDVYNGLL-307
SEQ-ID 88, PAP T-cell epitope binding to HLA-A24
213-LYCESVHNF-221
SEQ-ID 89, PAP T-cell epitope binding to MHC-2
199-GQDLFGIWSKVYDPL-213
SEQ-ID 90, PAP T-cell epitope binding to MHC-2
228-TEDTMTKLRELSELS-242
SEQ-ID 91, PSCA T-cell epitope binding to HLA-A2
14-ALQPGTALL-22
SEQ-ID 92, PSCA T-cell epitope binding to HLA-A2
105-AILALLPAL-113
SEQ-ID 93, PSCA T-cell epitope binding to HLA-A2
7-ALLMAGLAL-15
SEQ-ID 94, PSCA T-cell epitope g to HLA-A2
21-LLCYSCKAQV-30
SEQ-ID 95, Kallikrein 4 T-cell e binding to DRB1*0404
155-LLANGRMPTVLQCVN-169
SEQ-ID 96, Kallikrein 4 T-cell epitope binding to DRB1*0701
160-RMPTVLQCVNVSVVS-174
SEQ-ID 97, rein 4 T-cell e binding to DPB1*0401
125-SVSESDTIRSISIAS-139
SEQ-ID 98, EBV nuclear antigen 3 T-cell epitope g to MHC I HLA B8
FLRGRAYGL
SEQ-ID 99, HLA-A2 cted CD8+ T-cell epitope of PAP binding to HLA-A2
FLFLLFFWL
SEQ-ID 100, HLA-A2 restricted CD8+ T-cell epitope of PAP binding to HLA-A2
TLMSAMTNL
SEQ-ID 101, HLA-A2 restricted CD8+ T-cell epitope of PAP binding to HLA-A2
ALDVYNGLL
SEQ-ID 102, human HLA-A2.1-restricted CTL epitope of PAP-3 binding to HLA A2.1
ILLWQPIPV
SEQ-ID 103, HLA-A2.1-restricted CTL epitope of STEAP-3 binding to HLA-A2.1
LLLGTIHAL
SEQ-ID 104, HLA-A2.1-restricted CTL epitope of MUC-1 and MUC-2 binding to
HLA-A2.1
CHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPA
SEQ-ID 105, single chain HLA-A0201/FLWGPRALV construct.
RTLVLLLSGALALTQTWAFLWGPRALVGGGGSGGGGSGGGGSGGGSGIQRTPKIQV
YSRHP
AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNH
VTLSQPKIVKWDRDMGGGGSGGGGSGGGGSGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQF
VRFDSDA
PRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSESHTVQRMYGCDV
GSDWRFLRG
YHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYL
ENGKETLQRT
DSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKW
KEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGG
GDYALAP GSQSSEMSLRDCKA
Claims (17)
1. An immunoglobulin linked with a toxic moiety, comprising at least an immunoglobulin variable region that ically binds to an MHC-peptide 5 complex preferentially associated with aberrant cells, n said peptide is derived from MAGE and is a peptide that is present in more than one MAGE protein, and wherein the MHC is MHC-1, and wherein said immunoglobulin is an antibody, an antibody fragment or a derivative of an antibody.
2. An immunoglobulin linked with a toxic moiety according to claim 1, n 10 the dy fragment is an Fab or the antibody derivative is an ScFV.
3. The immunoglobulin linked with a toxic moiety according to claim 1, n said globulin variable region is a Vh or Vhh.
4. The immunoglobulin linked with a toxic moiety according to claim 3 wherein said globulin variable region further comprises a Vl. 15
5. The immunoglobulin linked with a toxic moiety according to claim 4 being a human IgG.
6. The globulin linked with a toxic moiety according to any one of claims 1 to 5, wherein the toxic moiety is chemically linked to the immunoglobulin.
7. The immunoglobulin linked with a toxic moiety according to any one of claims 20 1 to 6, wherein the toxic moiety is a proteinaceous toxic moiety.
8. The immunoglobulin linked with a toxic moiety according to claim 7, wherein the immunoglobulin is linked with the proteinaceous toxic moiety by a peptide linker.
9. The immunoglobulin linked with a toxic moiety according to claim 8, wherein 25 the immunoglobulin linked to the toxic moiety is encoded at the DNA level.
10. A pharmaceutical ition comprising an immunoglobulin linked with a toxic moiety according to any one of claims 1 to 9 and a suitable diluent and/or excipient.
11. Use of an immunoglobulin linked with a toxic moiety according to any of 30 claims 1 to 9, in the manufacture of a medicament for the treatment of a host suffering from a disease associated with aberrant cells.
12. Use according to claim 11, wherein the toxic moiety is internalized into the aberrant cell during said treatment.
13. Use of an immunoglobulin linked with a toxic moiety according to any of claims 1 to 9, in the manufacture of a medicament, for the treatment of a host suffering from cancer, wherein at least the toxic moiety is internalized into the aberrant cell during said treatment. 5
14. An immunoglobulin according to claim 1, substantially as herein described or ified.
15. A pharmaceutical composition according to claim 10, ntially as herein described or exemplified.
16. A use according to claim 11, substantially as herein described or exemplified. 10
17. A use according to claim 13, substantially as herein bed or exemplified. APO-T B.V. By their Attorneys HENRY HUGHES IP 15 Per:
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201261586568P | 2012-01-13 | 2012-01-13 | |
US61/586,568 | 2012-01-13 | ||
NZ62730013 | 2013-01-11 |
Publications (2)
Publication Number | Publication Date |
---|---|
NZ724880A true NZ724880A (en) | 2021-03-26 |
NZ724880B2 NZ724880B2 (en) | 2021-06-29 |
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