NZ716717B2 - An expression construct and process for enhancing the carbon, nitrogen, biomass and yield of plants - Google Patents
An expression construct and process for enhancing the carbon, nitrogen, biomass and yield of plants Download PDFInfo
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- NZ716717B2 NZ716717B2 NZ716717A NZ71671712A NZ716717B2 NZ 716717 B2 NZ716717 B2 NZ 716717B2 NZ 716717 A NZ716717 A NZ 716717A NZ 71671712 A NZ71671712 A NZ 71671712A NZ 716717 B2 NZ716717 B2 NZ 716717B2
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Abstract
Disclosed is an expression construct comprising SEQ ID NO. 7 for co-expression of the genes AspAT, GS and PEPCase comprising nucleotide sequences SEQ ID NO: 1, SEQ ID NO: 2 and SEQ ID NO: 3, linked to at least one control sequence and a transcription terminator sequence, useful for enhancing the carbon, nitrogen, biomass and yield of plants as compared to wild type or untransformed plant. bon, nitrogen, biomass and yield of plants as compared to wild type or untransformed plant.
Description
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AN EXPRESSION CONSTRUCT AND PROCESS FOR ENHANCING THE CARBON, NITROGEN,
BIOMASS AND YIELD OF PLANTS
The following specification particularly describes the invention and the manner in which it is
to be med:
FIELD OF THE INVENTION
The present invention relates to an expression construct for enhancing the carbon (C),
nitrogen (N), biomass and yield of plants.
Further, the present invention provides the process for enhancement of C and N levels and
subsequent improvement in the biomass and yield of plant by using the aforesaid
expression construct which utilizes co-overexpression of genes from enzymes
phosphoenolpyruvate carboxylase (hereinafter, referred as ”PEPCase”), glutamine
synthetase (hereinafter, referred as ”GS”) and aspartate aminotransferase nafter,
referred as ”AspAT”). In particular, the present invention is directed to transgenic plants
where nucleic acid sequences ng the said proteins are sed in plant cells.
More particularly, the t invention relates to the transformation of a plant with
genetic uct involving rexpression of three genes wherein one gene PEPCase
encodes enzyme responsible to capture C02 and the other two encode for s (AspAT
and GS) involved in N assimilation wherein the N assimilation requires C skeleton which is
met by PEPCase, under the control of constitutive promoter comprising plant Arabidopsis
thaliana transformed with AspAT+ G5 + PEPCase gene and expression of this gene in plants,
thereby enhancing the status of C and N, biomass and yield of plant.
BACKGROUND OF THE ION AND PRIOR ART
The present invention relates to a transformed plant with co-overexpression of three genes,
viz.
AspAT, G5 and PEPCase, leading to enhanced C, N content, biomass, and yield component.
PEPCase (EC. 31) is a ubiquitous enzyme in plants that catalyses the B-carboxylation of
yieldphosphgolpyruvate (hereinafter, referred as ”PEP”) in the presence of HC03_and Mg2+ to0 acetate (hereinafter, referred as ”OAA”) and inorganic phosphate (hereinafter,
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ed as ”Pi”), and it primarily has an anaplerotic function of replenishing the
tricarboxylic acid cycle with intermediates. In higher plants, there are several ms of
PEPCase of different organ specificities and they are involved in a variety of functions
including stomata opening, fruit ripening and seed maturation. The leaves of C4 and CAM
plants n high levels of PEPCase, which catalyze the initial C02 fixation of
photosynthesis. The much lower levels of PEPCase seen in the leaves of C3 plants contribute
to an anaplerotic function and play a role in tion ofthe cellular pH.
GS (EC 6.3.1.2) catalyses the ATP-dependent condensation of ammonia (hereinafter,
referred as ”NH3”) with glutamate (hereinafter, referred as ”Glu”) to produce glutamine
(hereinafter, referred as ”Gln”). Subsequently, glutamate synthase ) ers the
amide group of Gln to CL —ketoglutarate ing two molecules of Glu. Both Gin and Glu
are the primary source of organic N for proteins, nucleic acid and chlorophyll.
AspAT (EC 2.6.1.1) catalyzes the reversible transfer of the amino group of te
(hereinafter, referred as ”Asp”) to OL-ketoglutarate to form OAA and Glu. In plants, AspAT
has been proposed to play several metabolic roles including: recycling of C skeletons during
NH3+ lation in roots, providing amide precursors for biosynthesis of major nitrogen
transport molecules such as asparagines (hereinafter, referred as ”Asn”) and ureides,
recruiting Asn nitrogen during seed g and ipating in intracellular C shuttles in C4
plants providing precursors for the biosynthesis of the Asp family of amino acids.
Plant performance in terms of biomass production, yield or harvest index depends upon
number of internal and environmental factors. Among all these factors, plant C and N level
is one of the important factors governing plant productivity. The ng details of C and N
assimilation suggest that a regulatory system coordinates the uptake and distribution of
these nutrients in se to both metabolic and environmental cues. Plants sense
changes in their C and N status and relay this ation to the nucleus where changes in
gene expression are brought about. Since plant growth and crop yield are largely influenced
by the assimilated C and N, many attempts have been made in the past to engineer efficient
C and N assimilation. However, there is no report yet which show significant improvement
in the st of C, N, biomass and yield in plants.
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Table 1 illustrates the status of information available on the various strategies to improve C
and/or N and biomass in different plants.
Table 1:
Functions Transformation Results Reference
System adopted
NAD kinase2 Arabidopsis NADK2 NADK2 overexpressors shi, H.,
(NADK2) overexpressor and were characterized by Takahara, K.,
nade mutant were increase in calvin cycle Hashida, S.,
Catalyzes the studied to igate intermediates and Hirabayashi,T.,
synthesis of the impact of altering amino acid like Glu Fujimori,T.,
NADP from NAD NADP level on plant and Gln. However, Yamada,M.K.,
in chloroplasts metabolism. there is no clear Yamaya,T.,
evidence on role of Yanagisawa, S.
NADK2 influencing C and Uchimiy, H.
and N lism. 2009. Plant
Physiol. 151: 100-
113.
Dof 1 Maize Dofl cDNA was Dofl overexpression Yanagisawa, S.,
overexpressed in in Arabidopsis has led Akiyama, A.,
Dofl is a Arabidopsis plants to co-operative Kisa ka, H.,
transcription under tive of modification of plant C Uchimiya, H. and
activator for the 355 promoter and N content, with Miwa, T. 2004.
le gene designated as ed growth Proc. Natl. Acad.
expressions 35$C4PPDK. under low N Sci. USA. 101:
associated with conditions. r, 7833—7838
the organic acid effect of CN
lism, alteration on plant
including biomass or yield was
PEPCase. not discussed.
GS i.) A soybean cytosolic Over expression of Vincent, R.,
GS gene (G515) fused lic GS Fraisier, V.,
GS ses the with the constitutive accelerated plant Chaillou, 5.,
ATP- ent CaMV 35$ promoter in development, g Limami, M. A.,
condensation of order to direct its over- to early senescence Deleens, E.,
NH3 with (Glu) to expression in Lotus and premature Phillipson, B.,
produce (Gln). corniculatus L. plants. ing when grown Douat, C.,
NH4+ rich medium. , J.-P. and
Limitation of C Hirel, B.
skeleton and energy 1997. Planta.
for enhanced NH4+ 201: 424-433.
D assimilation were
anticipated.
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ii.) A pea cytosolic GS Overexpression of Oliveira, |..,
gene was lic GS in relation , T.,
overexpressed in to N, light and Knight, T., Clark,
tobacco plants photorespiration A. and Coruzzi,
suggested an G. 2002, Plant
alternative route to Physiol.
chloroplastic GS for 129:1170-1180
assimilation of
photorespiratory
ammonium.
iii.) Full-length cDNAs An increased metabolic Cai, H., Zhou, Y.,
encoding rice cytosolic level in GS- Xiao, J., Li, X.,
GS genes ;1 overexpressed plants Zhang, Q. and
and 2) along was obtained which
, Lian, X. 2009,
with E. coli GS gene showed higher total GS Plant Cell Rep.
(glnA) were activities and soluble 28: 527-537
overexpressed in the protein concentrations
rice plant under in leaves and higher
constitutive CaMV 35$ total amino acids and
promoter. total N content in the
whole plant. However,
decrease in both grain
yield production and
total amino acids were
observed in seeds of
GS-overexpressed
plants compared with
wild-type plants.
iv) cDNA encoding alfa Transgenic plants Fuentes, S., Allen,
alfa cytosolic GS over grew better under N D., Ortiz-Lopez, A.
expressed in tobacco starvation by and Hernandez,
plants maintaining G. 2001. J. Exp.
photosynthesis at rate Bot. 1-
able to those 1081.
of plants under high N,
while photosynthesis
in control plants was
inhibited by 40-50%.
These results further
reflect the need for
cooperative
modification of CN
metabolism for
developing plants with
better agronomic
traits.
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PEPCase i) The intact maize Transgenic plants Agarie, S., Miura,
gene encoding C4- exhibited higher A., Sumikura, R.,
PEPCase catalyses specific e used PEPCase activity with Tsukamoto, S.,
the [3- for transformation of reduced 02 inhibition Nose, A., Arima, S.,
carboxylation of rice plants of photosynthesis. It Matsuoka, M. and
PEP in the was found that the Tokutomi, MM.
presence of HC03 reduced 02 inhibition 2002. Plant Sci.
‘and Mg2+to yield photosynthesis was 162: 257-265.
OAA and Pi. ily due to
reduction of Pi rather
than se in the
partial direct fixation
of atmospheric C02
via the enhanced
maize PEPCase.
However, no report on
biomass accumulation
or yield as a
consequence of
PEPCase
overexpression was
reported.
ii) Maize PEPCase Higher levels of maize Hudspeth,
introduced in to PEPCase transcript of R.L.,Grula,
o plants under the correct size were J.W.,Dai, Z.,
the l maize obtained using tobacco Edwards, G.E. and
e and tobacco (chlorophyll a/b Ku, M.S.B. 1992.
chlorophyll a/b binding n gene Plant Physiol. 98:
binding protein gene promoter. With two 458-464
promoter. fold incerase in
PEPCase activities in
leaf, transgenic plants
had significantly
elevated levels of
titratable yand
malic acid. However,
these biochemical
differences did not
e any significant
physiological changes
with respect to
photosynthetic rate or
C02 compensation
point.
AspAT i) m miliaceum mAspAT- or cAspAT- Sentoku, N.,
L. mitochondrial and transformed plants Taniguchi , M.,
AspAp cytosolic AspAT had about threefold or Sugiyama, T.,
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catalyzes (mAspAT and cAspAT, 3.5-fold higher AspAT ru, K.,
the reversible respectively) genes activity in , R.,
transfer of the were expressed in the leafthan non- Takaiwa, F. and
amino group of tobacco plants under transformed plants, Toki, S. 2000.
(Asp) to a- CaMV 35$ promoter. respectively. Plant Cell Rep.
ketogluta rate to Leaves of both 19598 - 603.
form OAA and transformed plants
Glu had increased levels of
PEPCase and
transformed plants
with cAspAT also had
increased levels of
mAspAT in the leaf.
These results further
ted interaction
between C and N
metabolism.
ii) Three AspAT genes Compared with Zhou. Y., Cai ,H.,
from rice (OsAAT3) control Xiao, J.
and one AspAT gene plants, the Li, X., Zhang, Q.
from E. coli (EcAAT) transformants showed and Lian, X. 2009.
were over expressed significantly increased Theor Appl
under CaMV 35$ leaf AspAT activity and Genet. 11821381-
er in rice greater seed amino 1390
plants .
acid and n
contents. However,
influence of CN level
on biomass or yield
was not discussed.
Higher activity of PEPCase shall facilate C02 capturing and makes the carbon backbone
available for routing of en in to organic form through joint activity of AspAT and GS. As
a result, the inventors have found that object of the present invention can be attained by
itant increase in expression of genes encoding AspAT, GS and PEPCase to establish
the present invention.
Below is given a state of the art knowledge in relation to the present invention and the
attempts previously made to enhance either carbon and / or nitrogen levels in the plant.
Reference may be made to article by Hudspeth, R.L., Grula, J.W., Dai, 2., Edwards, G.E. and
Ku, M.S.B., entitled ”Expression of miaze phosphoenolpyruvate carboxylase in transgenic
tobacocnl992, Plant Physiology 98:
, 458-464), wherein PEPCase from maize was
expressed under a tobacco(Nicotiana plumbaginifolia) chlorophyll a/b binding protein gene
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promoter in tobacco plants. Up to two fold higher activity of PEPCase was observed in the
transgenic leaves as compared to non-transformants with elevated levels of titratable
acidity and malic acid. However, these biochemical differences did not produce any
significant physiological changes with respect to photosynthetic rate or C02 sation
point.
Reference may be made to article by Lebouteiller, B., Dupont, A.G., Pierre, J.N., Bleton
, J.,
Tchapla, A., Maucourt, M. and Moing, A., Rolin, D., and Vidal, J. entitled ”Physiological
impacts of modulating phosphoenolpyruvate carboxylase levels in leaves and seeds of
Arabidopsis thaliana” (2007, Plant Science, 172:256-272,), wherein the PEPCase of sorghum
was expressed under CaMV 35$ promoter in Arabidopsis plant. The leaves of the primary
transformants showed up to ten-fold increase in PEPCase activity and up to 30% increase in
the dry weight and total protein content of seeds. However, the transformants (primary and
progeny) did not show any ed growth phenotype or modification in seed production
per plant
nce may be made to yet another e by Chen, L.M., Li, K.Z. Miwa, T. and Izui, K.
ed ”Overexpression of a acterial phosphoenol pyruvate ylase with
diminished ivity to feedback inhibition in Arabidopsis changes amino acid metabolism”
(2004, Planta, 219: 440-419.), wherein the cyanobacterial Synechococcus us
phosphoenolpyruvate carboxylase (SvPEPCase) with diminished sensitivity to feed back
tion, was over sed under the control of CaMV 35$ promoter in Arabidopsis
plant. One third of the T1 transformants showed severe phenotypes as bleached leaves and
were infertile when grown on soil. However, no such phenotype was observed with
Arabidopsis transformed with maize PEPCase (ZmPEPC) for C4 photosynthesis, which is
normally sensitive to a feedback inhibitor, L-malate. The growth inhibition of SvPEPC
ormed T2 plants was presumed to be primarily due to a decreased availability of
phosphoenolpyruvate (PEP), one of the precursors for the shikimate pathway for the
synthesis of aromatic amino acids and phenylpropanoids.
Referernmay be made to yet another article by ma, H., Hatch, M.D., Tamai, T.,
Tsuchida, H., Sudoh, S., Furbank, RT and Miyao, M., entitled ”Activity regulation and
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physiological impacts of maize C (4)-specific phosphoenolpyruvate carboxylase
overproduced in transgenic rice plants” (2003, Photosynthesis Research, 77: 227-239),
n the intact maize PEPCase gene was overexpressed in the leaves of rice plants.
Introduced PEPCase in transgenic rice leaves underwent activity regulation through protein
phosphorylation in manner similar to nous rice e but contrary to that
occurring in maize leaves, being downregulated in the light and upregulated in the dark.
Compared with untransformed rice, the level of PEP was slightly lower and the product
(OAA) was slightly higher in transgenic rice, suggesting that maize PEPCase was functioning
even though it remained dephosphorylated and less active in the light. 14C02 labeling
experiments ted that maize PEPCase did not contribute significantly to the
photosynthetic C02 fixation of transgenic rice plants. Rather, it slightly lowered the C02
lation rate. This effect was ascribable to the stimulation of ation in the light,
which was more marked at lower 02 concentrations. It was concluded that overproduction
of e does not directly affect photosynthesis significantly but it suppresses
photosynthesis indirectly by stimulating respiration in the light.
Reference may be made to yet another article by Vincent, R., er, V., Chaillou, S.,
Limami, M.A., Deleens, E., Phillipson, B., Douat, C., Boutin, J.P. and Hirel, B., entitled
”Overexpression of a soybean gene encoding cytosolic glutamine synthetase in shoots of
transgenic Lotus corniculatus L. plants triggers changes in ammonium assimilation and plant
development” (1997, Planta. 201:424-433), wherein a soyabean cytosolic GS gene 6515 was
fused with CaMV 35$ promoter to achieve constitutive expression in the lotus corniculatus
L. plants. On growing the transgenic plants under different N regimes an increase in free
amino acids and ammonium was observed anied by a decrease in soluble
carbohydrates in the transgenic plants cultivated with 12 mM NH4+ in comparison to the
wild type grown under the same conditions. ing experiments revealed that both
ammonium uptake in the roots and the subsequent translocation of amino acids to the
shoots was lower in plants over expressing GS. However the early floral development in the
ormed plants suggested the role of GS in the early senescence and premature
ing when plants were grown on an ammonium-rich medium. Limitation of C skeleton
and enen for enhanced similation were anticipated.
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Reference may be made to yet another article by Fuentes, S.|., Allen, D.J., Ortiz-Lopez, A. and
Hernandez, G., entitled ”Overexpression of cytosolic glutamine synthetase increases
photosynthesis and growth at low nitrogen conditions” (2001, Journal of Experimental
, 52:1071-1081), wherein the alfa alfa GS driven by constitutive CaMV 35$ er
uced into tobacco plants. Leaf GS activity in the transgenic plants increased up to six
times of untrasformed plants. Under N starvation GS transgenic grew better by maintenance
of photosynthesis at rates indistinguishable from plants under high N, while photosynthesis in
the control plants was inhibited by 40-50 % by N deprivation. However, under optimum N
ization conditions, no effect of GS overexpression on photosynthesis or growth was
observed.
Reference may be made to yet another article by Oliveira, |.., Brears, T., Knight, T., Clark, A.
and Coruzzi, G., ed ”Overexpression of cytosolic glutamine synthetase. Relation to
nitrogen, light, and photorespiration” (2002, Plant Physiology, 129: 1170-1180), n the
overexpression of pea cytosolic GS was d in relation to nitrogen, light and
photorespiration. o plants, which cally overexpress cytosolic GSl in leaves,
display a light-dependent improved growth phenotype under N-limiting and N-non-limiting
ions as evident by se in fresh weight, dry weight, and leaf soluble protein. The
cytosolic GSl transgenic plants also exhibit an increase in the C02 photorespiratory burst and
an increase in levels of espiratory intermediates, suggesting changes in
photorespiration. However, the effect of stimulation of photorespiration by GS overexression
on plant productivity was not discussed.
Reference may be made to yet r article by Cai, H., Zhou, Y., Xiao, J., Li, X., Zhang, Q.
and Lian, X., entitled ”Overexpressed glutamine synthetase gene modifies nitrogen
metabolism and abiotic stress response in rice” (2009, Plant Cell Reports. 28: 7),
wherein the full-length cDNAs encoding rice (Oryza sativa) cytosolic GS genes (OsGSl;1 and
OsGSl;2) along with E. coli GS gene (glnA) were pressed in the rice plant under
constitutive CaMV 35$ promoter. An increased metabolic level in GS-overexpressed plants
was obtained which showed higher total GS activities and soluble protein concentrations in
leaves and higher total amino acids and total N content in the whole plant. However,
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decrease in both grain yield production and total amino acids were observed in seeds of GS-
overexpressed plants compared with wild-type plants.
Reference may be made to yet another e by Sentoku, N., Taniguchi, M., Sugiyama, T.,
Ishimaru, K., Ohsugi, R., Takaiwa, F. and Toki, S., entitled ” Analysis of the transgenic o
plants expressing Panicum miliaceum aspartate aminotransferase genes" (2000, Plant Cell
Reports, 19: 598-603), n the effects of the overexpression of Panicum mitochondrial
and cytoplasmic AspAT (mAspAT and cAspAT respectively) under the control of CaMV 35$
promoter were evaluated on transgenic tobacco plants. The mAspAT- or cAspAT-transformed
plants had about old or 3.5-fold higher AspAT activity in the leaf than ansformed
plants, respectively. Interestingly, the leaves of both transformed plants had sed levels
of PEPCase and transformed plants with cAspAT also had increased levels of mAspAT in the
leaf. These results suggest that the increased expression of Panicum cAspAT in transgenic
tobacco enhances the expression of its endogenous mAspAT and PEPCase, and the increased
expression of Panicum mAspAT enhances the expression of its endogenous PEPCase.
However, there is no account on effect of AspAT overexpression on plant growth and
productivity.
Reference may be made to yet another article by Zhou, Y., Cai, H., Xiao, J., Li, X., Zhang, Q.
and Lian, X., entitled ”Over-expression of aspartate aminotransferase genes in rice resulted
in altered nitrogen metabolism and increased amino acid t in seeds” (2009,
tical and Applied Genetics, 118:1381—1390 ), wherein three AspAT genes from rice
(OsAAT1-3) encoding chloroplastic, cytoplasmic, and mitochondrial AspAT isoenzymes,
respectively and one AspAT gene from E. coli (EcAAT) were overexpressed in rice plant
under the l of CaMV 35$ promoter. The OsAAT 1, OsAATZ, and EcAATtransformants
showed significantly increased leaf AspAT activity and greater seed amino acid and protein
contents. r no significant changes were found in leaf AspAT activity, seed amino acid
content or protein content in OsAAT3 over-expressed plants.
Reference may be made to yet another article by Murooka, Y., Mori, Y. and Hayashi, M.,
entitled ” ion of the amino acid content of Arabidopsis seeds by expressing soyabean
aspartate aminotransferase gene” (2009, Journal of Bioscience and Bioengineering, 94: 225-
230), Wain AspAT5 encoding the chloroplast AspAT from Soyabean was linked to CaMV
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355 promoter for achieving its overexpression in the Arabidopsis plant. Expression of
AspAT5 in transformants caused 3-, 4-, 23-, and d increases in the contents of free
glycine, alanine, asparagine, and Glu, respectively, in the T3 seeds. However, a decrease in
the contents of valine, ne, isoleucine, leucine, and phenylalanine by several folds was
also observed. Further, there is no report on effect of overexpression of AspAt on plant
growth and productivity.
Reference may be made to yet another article by Yanagisawa, S., Akiyama, A., Kawaka, H.,
Uchimiya, H. and Miwa, T. entitled ”Metabolic engineering with Dofl transcription factor in
: Improved nitrogen assimilation and growth under low-nitrogen conditions" (2004,
Proceedings of the National Academy of Sceinces (USA), 101:7833-7838), wherein over-
expression of Dofl transcription factor from maize improves N assimilation in transgenic
Arabidopsis plants. Dofl expressing plants showed up-regulation of genes encoding
enzymes for C on production, a marked increase of amino acid contents, and a
reduction of the glucose level. The results suggest cooperative modification of C and N
metabolisms on the basis of their intimate link. Elementary analysis revealed that the N
content increased in the Dofl transgenic plants (230%), indicating promotion of net N
assimilation. However, effect of C N alteration on plant biomass or yield was not discussed.
Reference may be made to still another e by shi, H., Takahara, K., Hashida, S.,
Hirabayashi, T., Fujimori, T., Kawai-Yamada, M., , T., Yanagisawa, S. and Hirofumi
Uchimiya, H., entitled ”Pleiotropic Modulation of carbon and nitrogen metabolism in
Arabidopsis plants overexpressing the NAD 2 gene” by (2009, Plant logy.
151:100-113), wherein enic Arabidopsis plants with over expression of NAD kinase2
(NADK2) along with NADK2 mutants were raised to investigate the impacts of altering NADP
level on plant metabolism. Metabolite profiling revealed that NADP (H) concentrations were
tional to NADK activity in NADK2 overexpressors and in the NADK2 mutant. l
metabolites associated with the calvin cycle were also higher in the overexpressors,
accompanied by an increase in overall Rubisco activity. Furthermore, enhanced NADP (H)
production due to NADK2 overexpression increased N assimilation. Gin and Glu
concennons, as well as some other amino acids, were higher in the overexpressors.
However, there is no clear evidence on role of NADK2 influencing C and N metabolism.
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The improvement in the C and N status of plants is a major concern to improve productivity.
However, there is no report yet which show enhancement of C and N levels and subsequent
improvement in the biomass and yield of plant.
r, no attempt has been made to co-over express three genes, viz. AspAT, GS and
PEPCase, leading to enhanced status of C and N, s, and yield.
OBJECTIVES OF THE INVENTION
The main objective of the present invention is to provide an expression construct for
enhancing the carbon, nitrogen, biomass and yield of plants which obviates the drawbacks
ofthe hitherto known prior art as detailed above.
r objective of the present invention is to provide an expression construct for co-
overexpression of AspAT (SEQ ID NO: 1), GS (SEQ ID NO: 2). and PEPcase (SEQ ID NO: 3)
wherein PEPCase efficiently captures C02 whereas the other two genes encoding for
enzymes (AspAT and GS) have role in N assimilation, using the carbon backbone provided by
PEPCase ed reaction resulting in the ement of C and N status with improved
biomass and yield of .
Yet another objective of the present invention is to raise transgenic plant exhibiting co-
overexpression of genes AspAT, GS and PEPCase.
Still another objective of the present invention is to evaluate the expression of AspAT, GS
and PEPCase genes in transgenic plants.
Still another objective of the present invention is to evaluate the enic plants for status
of C and N, biomass and yield compared to wild plants.
Y OF THE INVENTION
Accordingly, the present ion provides an expression construct represented by SEQ ID
NO. 7 for co-expression of the genes AspAT, GS and PEPCase comprising nucleotide
sequences represented by SEQ ID NO: 1, SEQ ID NO: 2 and SEQ ID NO: 3, wherein SEQ ID
NO: 1 ents AspAT genes, SEQ ID NO: 2 represents GS genes and SEQ ID NO: 3
represents PEPCase genes linked to atleast one control sequence and a transcription
terminator sequence, useful for enhancing the carbon, nitrogen, biomass and yield of plants
as comde to wild type or untransformed plant.
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In an embodiment of the present invention, the control sequence is preferably ented
by SEQ ID NO: 4.
In r embodiment of the present invention, the ription terminator sequence is
represented by SEQ ID NO: 5.
In an embodiment, the present ion provides an expression construct prepared from
the cytoso|ic AspATgene from soyabean, cytoso|ic GS gene from tobacoo and cytoso|ic
PEPCase gene from maize.
In another embodiment of the present invention, the po|ynuc|eotide having SEQ ID No: 7 is
overexpressed in plants.
In still another ment of the present invention, the control sequence used is a
constitutive promoter selected from the group ting of CaMV 35$ promoter, rubisco
promoter, ubiquitin promoter, actin promoter.
In still another embodiment of the present invention, the ator used is preferably
selected from the group consisting of Nos terminator and CaMV 3’ UTR.
In still another embodiment of the present invention, a process for preparing the expression
construct wherein the process sing the steps of:
i) amplifying cDNA sequences encoding genes represented by SEQ ID NO: 1 using
primers represented by SEQ ID NO: 10 and SEQ ID NO: 11, SEQ ID NO: 2 using
primers represented by SEQ ID NO: 8 and SEQ ID NO: 9 and SEQ ID NO: 3 using
primers represented by SEQ ID NO: 12 and SEQ ID NO: 13;
ii) cloning independently the amplified product of SEQ ID NO: 1, 2 and 3 as
obtained in
step (i) into pGEM-T easy vector;
iii) digesting independently the plasmid from the positive clones as obtained in step
(ii) along with A 1302 and further ligating the digested gene
ts and pCAMBIA 1302 and transforming into E.coli DH5 0L cells;
iv) sequencing the plasmid from the ve colonies obtained in step (iii)
confirming the inframe cloning of AspAT::pCAMBIA1302; GS::pCAMBIA1302
and PEPCase::pCAMBIA 1302.
v) amplifying the products ed in step (iv) by using primers represented by
D SEQ ID NO: 10 and SEQ ID NO: 16; SEQ ID NO: 14 and SEQ ID NO: 15 and SEQ
ID NO: 17 and SEQ ID NO: 18.
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vi) cloning, digesting, ligating and sequencing was again performed ndently
for the amplified GS coding sequence to form GS+pCAMB|A1302 which was
further digested and ligated with the plasmids of positive clones of amplified
AspATcoding sequence to form A5pAT+GS+pCAMB|A1302 expression cassette;
vii) ligating the digested plasmids of positive clones of amplified e coding
sequence with the destination pCAMB|A1302 which was previously cloned with
the AspAT+GS+ expression cassette as obtained in step (vi) such that the genes
AspA, GS and e were controlled by independent CaMV 35$ promoter
and Nos transcriptional terminator to form single plant expression construct
AspAT + GS + PEPCase ented by SEQ ID NO: 7.
In still another embodiment of the present invention, a process for enhancing the carbon,
nitrogen, biomass and yield of plants using the sion construct, wherein the said
process comprising the steps of:
a) transforming Agrobacterium tumefacians strain with the expression uct
as claimed in claim 1;
b) orming the explants with the recombinant Agrobacterium cians
strain as obtained in step (a);
c) selecting the transformed explants of step (b) to obtain the desired
transformed plants having ed level of carbon, nitrogen, biomass and
yield of plants as compared to wild type plant.
In still another embodiment of the present invention, a process wherein the
ormed plants display an increase of about 45-50% in PEPCase activity, atleast 55%
in GS activity and 55-60% in AspAT ty as compared to wild type, resulting in
increase in carbon and nitrogen levels in the plant.
In another embodiment of the present invention, the Agrobacterium strain provided is
selected from a group consisting of GV3101 with ATCC number Agrobacterium tumefaciens
(GV3101 (pMP90RK) (C58 derivative) ATCC® Number: 33970 Reference: Hayashi H, Czaja |,
Lubenow H, Schell J n R. 1992.
In yet another embodiment of the present invention, the ormed plants are selected
from the group consisting of grain crops, pulses, ble crops, oilseed crop and
ornamens.
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In yet another ment, the transformed plants are selected from the group consisting
of arabidopsis, tomato, potato, tobacco, maize, wheat, rice, cotton, mustard, pigeon pea,
cowpea, pea, sugarcane, soyabean and sorghum.
In still another embodiment, the transformed plants as compared to wild type display
increased yield and/or s, indicated by increased seed yield and/or pod yield.
In still another embodiment, the transformed plants display enhanced growth
characteristics characterized by sed shoot fresh weight, shoot dry weight, root fresh
and dry weight as compared to wild type or untransformed plant.
In yet another embodiment of the present invention, the transformed plant shows
enhanced levels of carbon, nitrogen, s and yield as compared to wild plants.
In still another ment of the present invention, the sion and functionality of
over expressed enzymes in transgenic plants is evaluated.
In yet r embodiment of the present invention, the selectable marker used is hpt gene
(hygromycin phosphotransferase) represented by SEQ ID NO: 6 for hygromycin resistance
controlled by duplicated CaMV 35$ promoter and terminated by CaMV 3'UTR (polyA signal).
In another embodiment of the present invention, biochemical assays and RT-PCR were
performed to evaluate the expression of introduced genes and the functionality of over
expressed enzymes in transgenic plants.
In a further embodiment of the present invention, the enic plants were investigated
for different growth and yield ters and compared to wild plants ated under the
same conditions.
BRIEF DESCRIPTION OF THE ACCOMPANYING DRAWINGS
Figure 1 represents a schematic view of T- DNA region of plant transformation vector
pCAMBIA1302 for co-overexpression of AspAT, GS and PEPCase (a) and amplification of
coding sequences for AspAT, GS and PEPCase from respective plant sources (b) as discussed
in Examples 1 to 4.
Figure 2 represents DNA analysis (a) and RNA analysis (b) of WT, LI and L2, where WT = wild,'
L1 and L2 = two different transgenic lines co-overexpressing AspAT, GS and PEPCase.
Figure Dapresents shoot fresh weight (FW) (a), shoot dry weight (DW) (b), root fresh
weight (c) and root dry weight (d) of WT and AspAT+GS+PEPCase transgenic plants at 60
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days of sowing. Data is mean of five separate biological replicates with standard deviation
marked on each bar.
Figure 4 represents AspAT activity (a) GS activity (b) and PEPCase activity (d) of WT, LI and
L2 at 42 days of sowing. Data is mean of three separate biological replicates with rd
deviation marked on each bar.
Figure 5 represents Analyses of N (a) and C (b) content from ent plant parts of WT, LI
and L2 lines at 65 days of sowing. Data is mean of three separate biological ates with
standard deviation marked on each bar.
Figure 6 represents a representative WT and AspAT+GS+PEPCase transgenic plants at 75
days of sowing.
Figure 7 represents pod number (a) and seed yield (b) in WT, LI and L2 at 75 days of sowing.
Data is mean of five separate biological replicated with standard deviation marked on each
bar.
DETAILED DESCRIPTION OF THE INVENTION
The present invention relates to c engineering of C and N metabolism in plants. In
particular, the present invention relates to an expression construct for co-overexpression of
AspAT, GS and PEPCase for concomitant alteration in the s involved in C and N
assimilation or utilization and/or their expression in order to engineer plants with increased
C and N levels thereby promoting better growth and biomass production and enhanced
yield.
The term "vector" refers to a construct made up of nucleic acids wherein gene from a
n source can be ligated and isolated when . The construct is usually a plasmid
(i.e. extra chromosomal self replicating nucleic acid) and is propagated, for example
bacterial cell of Eco/i. The vector in the present invention was used to transfer the gene
from one source to r.
The term "gene" refers to the sequence of nucleic acids that can produce a polypeptide
chain.
The term "gene expression" refers to the level/amount of RNA (i.e. sequence of ribonucleic
acid) of choice ribed (i.e. the process of sis of RNA by DNA) by DNA (i.e.
sequean deoxyribonucleic acid). When the gene was transcribed in higher amounts as
compared to the control, it was referred to as "over-expression” of gene.
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The term ”selectable marker” refers to a gene, which allows a cell to survive in the presence
of an otherwise toxic antibiotic
The term "transgenic plant" refers to genetically transformed plants with stable integration
of introduced gene in to its genome The term ”promoter” refers to the specific DNA
sequence, usually located upstream (5') to the DNA sequence involved in transcription,
n the enzyme RNA polymerase binds for the process of ription. “Constitutive
promoters” direct expression of the gene in all tissues and during all periods regardless of
the surrounding environment and development stage of the organism.
The term ssion cassettes” refers to vector comprising of (a) a tutive promoter;
(b) all the three genes cloned 3' to the constitutive promoter, (c) a polyadenylation signal
located 3' to the coding sequence.
and capable of passing genetic information on to successive generations.
type" plants are untransformed .
The term "To" refers to the first set of genetically transformed plants that can be identified
and selected upon growth in presence ofa selection agent antibiotic, for which the
transgenic plant contains the corresponding resistance gene. The term "T1" refers to the
generation of plants obtained after self-fertilization of the s of T 0 generation plants,
previously selected as being transgenic. "T2” plants are generated from T1 plants, and so on.
The present invention will be illustrated in greater details by the following examples.
EXAMPLES
The following examples are given by way of illustration of the present invention and therefore
should not be construed to limit the scope of the present invention.
Sequences of the primers used in the present invention are listed as follows:
Name of the ce
Sequence Purpose
sequence ID No.
AspAT cDNA atggcttctc acgacagcat ctccgcttct ccaacctccg cttctgattc cgtcttcaat 60 ents 1
cacctcgttc ccga agatcctatc ctcggggtaa ctgtcgctta taacaaagat 120
sequence nucleotide
ccaagtccag ttaagctcaa cttgggagtt tacc gaactgagga aggaaaacct 180
cttgttttga atgtagtgag gcgagttgaa cagcaactca acgt gtcacgcaac 240 sequences of
aaggaatata ttccgatcgt tgggcttgct aata aattgagtgc taagcttatt 300
AspAT genes for
tttggggctg acagccctgc tattcaagac aacagggtta ccactgttca atgcttgtct 360
ggaactggtt ctttaagagt tgaa tttttggcta aacactatca ccaacggact 420 making an
atatacttgc caacaccaac ttggggcaat cacccgaagg ttttcaactt agcaggcttg 480
expression
tctgtcaaaa cataccgcta tcca gcaacacgag gacttgactt tcaaggactt 540
ctggaagacc ttggttctgc tccatctgga tctattgttt tgctacatgc atgcgcacat 600
actg gtgtggatcc aacccttgag gagc agattaggca gctaataaga 660
tcaaaagctt cttt ctttgacagt gcttatcagg gttttgctag tggaagtcta 720
gatgcagatg cccaacctgt tcgtttgttt gttgctgatg gaggcgaatt gctggtagca 780
caaagctatg caaagaatct gggtctttat ggggaacgtg cctt aagcattgtc 840
tgcaagtcag ctgatgttgc aagcagggtt gagagccagc tgaagctagt gattaggccc 900
atgtactcaa gtcctcccat tcatggtgca tccattgtgg ctgccattct ccgg 960
aatttgttca atgactggac tattgagttg aaggcaatgg gcat tatg 1020
cgccaagaac ttttcgatgc tttatgttcc agaggcacac ctggcgattg gagtcacatt 1080
atcaaacaga tgtt tactttcact ggattgaatg cggaacaagt ttccttcatg 1140
actaaagagt tccatatata catgacatct gatgggagga ttagcatggc tggtctgagt 1200
tccaaaactg tcccacttct ggcggatgcg atacatgcag ctgtaacccg agttgtctaa 1260
GS cDNA atggctcatc tttcagatct cgttaatctc aatctctctg actccactca gaaaattatt 60 Represents 2
gctgaataca tatggattgg tggatcagga atggacgtca ggagcaaagc cagaacactt 120
sequence nucleotide
tctggacctg ttgatgatcc ttcaaagctt cccaaatgga attatgatgg ttctagcaca 180
gctc ctggagaaga cagtgaagag atcctatatc ctcaagcaat tttcaaggat 240 sequences of GS
agaa ggggcaacaa tatcttggtc atttgtgatt gttacacccc tgaa 300
genes for making
cccattccaa caaacaaaag gcacagtgct gccaagattt tcagccaccc tgatgttgtt 360
gttgaggaac cctggtatgg tcttgagcaa gaatacacct aaaa agatatcaat 420 an expression
tggcctcttg gatggcctct tggtggtttt cctggaccac agggaccata ctattgcgga 480
construct
attggagctg gaaaggtctt tggacgcgat atcgttgact ctcattataa tctc 540
tatgctggga ttaacatcag tggtatcaat ggagaagtga tgcccggaca gtgggaattt 600
caagttggac cttcagttgg catttcagca gctgatgaat tgtgggcagc tcgttacatt 660
cttgagagga ttactgagat tgctggagtt gtggtctcat ttgaccccaa acctattccg 720
ggtgactgga ctgg caca aactacagca caaagtctat gaggaatgaa 780
ggaggctatg aagtcattaa gaaggcaatt gagaaccttg gactgaggca caaggagcat 840
gcat atggtgaagg caacgagcgt cgtctcactg gaagacacga aacagctgac 900
acat tcaaatgggg agttgcgaac cgtggtgcat ctattcgtgt gggaagagac 960
acggagagag aagggaaggg atacttcgag gataggaggc ctgcttcgaa tatggatcca 1020
ttcgtcgtga cttccatgat tgctgagacc ctat ccgagccttg a 1071
PEPCase atggcgtcga ccaaggctcc cggccccggc cacc actccatcga cgcgcagctc 60 Represents 3
cgtcagctgg tcccaggcaa ggtctccgag gacgacaagc tcatcgagta cgatgcgctg 120
cDNA nucleotide
ctcgtcgacc gcttcctcaa catcctccag gacctccacg ggcccagcct tcgcgaattt 180
ce gtccaggagt gctacgaggt ctcagccgac tacgagggca aaggagacac gacgaagctg 240 sequences of
ggcgagctcg gcgccaagct cacggggctg gcccccgccg acgccatcct cgtggcgagc 300
PEPCase genes for
tccatcctgc acatgctcaa cctcgccaac ctggccgagg aggtgcagat cgcgcaccgc 360
cgccgcaaca gcaagctcaa gaaaggtggg ttcgccgacg agggctccgc caccaccgag 420 making an
tccgacatcg aggagacgct caagcgcctc gtgtccgagg tcggcaagtc ccccgaggag 480
sion
gtgttcgagg cgctcaagaa ccagaccgtc gtct tcaccgcgca tcctacgcag 540
tccgcccgcc gctcgctcct gcaaaaaaat gccaggatcc gaaattgtct gacccagctg 600 uct
aatgccaagg acatcactga cgacgacaag caggagctcg atgaggctct gcagagagag 660
atccaagcag ccttcagaac cgatgaaatc aggagggcac cccc cgaa 720
atgcgctatg ggatgagcta catccatgag actgtatgga agggtgtgcc taagttcttg 780
cgccgtgtgg atacagccct gaagaatatc ggcatcaatg agcgccttcc ctacaatgtt 840
tctctcattc ggttctcttc gggt ggtgaccgcg atcc aagagttacc 900
ccggaggtga caagagatgt atgcttgctg gccagaatga tggctgcaaa cttgtacatc 960
gatcagattg aagagctgat gtttgagctc tctatgtggc gctgcaacga tcgt 1020
gttcgtgccg tcca cagttcgtct ggttccaaag ttaccaagta ttacatagaa 1080
ttctggaagc aaattcctcc aaacgagccc taccgggtga tactaggcca tgtaagggac 1140
aagctgtaca acacacgcga gcgtgctcgc catctgctgg gagt ttctgaaatt 1200
tcagcggaat cgtcatttac cagtatcgaa gagttccttg agccacttga gctgtgctac 1260
aaatcactgt gtgactgcgg cgacaaggcc atcgcggacg ggagcctcct ggacctcctg 1320
cgccaggtgt tcacgttcgg gctctccctg gtgaagctgg acatccggca ggagtcggag 1380
cggcacaccg acgtgatcga cgccatcacc acgcacctcg gcatcgggtc gtaccgcgag 1440
tggcccgagg acaagaggca ggagtggctg ctgtcggagc tgcgaggcaa gcgcccgctg 1500
ctgcccccgg ccca gaccgacgag gacg gcgc gttccacgtc 1560
ctcgcggagc tcccgcccga cagcttcggc ccctacatca tctccatggc cccc 1620
tcggacgtgc tcgccgtgga gctcctgcag cgcgagtgcg gcca gccgctgccc 1680
gtggtgccgc tgttcgagag gctggccgac tcgg cgcccgcgtc cgtggagcgc 1740
ctcttctcgg tggactggta catggaccgg atcaagggca agcagcaggt catggtcggc 1800
tactccgact ccggcaagga cgccggccgc ctgtccgcgg cgtggcagct gtacagggcg 1860
caggaggaga tggcgcaggt ggccaagcgc gtca agctcacctt gttccacggc 1920
cgcggaggca ccgtgggcag gggtggcggg cccacgcacc ttgccatcct gtcccagccg 1980
ccggacacca tcaacgggtc catccgtgtg acggtgcagg gcgaggtcat cgagttctgc 2040
ttcggggagg agcacctgtg cttccagact ctgcagcgct tcacggccgc cacgctggag 2100
cacggcatgc acccgccggt caag cccgagtggc gcaagctcat gatg 2160
gcggtcgtgg ccacggagga gtaccgctcc gtca aggaggcgcg cttcgtcgag 2220
tacttcagat cggctacacc ggagaccgag tacgggagga tgaacatcgg cagccggcca 2280
gccaagagga ggcccggcgg cggcatcacg accctgcgcg ccatcccctg gatcttctcg 2340
tggacccaga ccaggttcca cctccccgtg tggctgggag tcggcgccgc attcaagttc 2400
gccatcgaca aggacgtcag gaacttccag gtcctcaaag agatgtacaa cgagtggcca 2460
ttcttcaggg tcaccctgga cctgctggag atggttttcg ccaagggaga ccccggcatt 2520
ttgt atgacgagct gcttgtggcg gaagaactca agccctttgg gctc 2580
agggacaaat acgtggagac acagcagctt caga tcgctgggca caaggatatt 2640
cttgaaggcg atccattcct gaagcagggg ctggtgctgc ccta cacc 2700
ctgaacgtgt tccaggccta cacgctgaag cggataaggg accccaactt caaggtgacg 2760
ccccagccgc cgctgtccaa ggagttcgcc gacgagaaca agcccgccgg actggtcaag 2820
ctgaacccgg cgagcgagta cccgcccggc gaca tcct caccatgaag 2880
ggcatcgccg ccggcatgca gaacactggc tag 2913
CaMV 35S catggagtca caaa tagaggacct aacagaactc gccgtaaaga ctggcgaaca 60 Represents control 4
acag agtctcttac atga gaaa atcttcgtca acatggtgga 120
promoter sequence
gcacgacaca cttgtctact ccaaaaatat caaagataca gtctcagaag accaaagggc 180
sequence aattgagact tttcaacaaa gggtaatatc cggaaacctc ctcggattcc attgcccagc 240
tatctgtcac tttattgtga tgga aaaggaaggt taca aatgccatca 300
ttgcgataaa ggaaaggcca tcgttgaaga tgcctctgcc ggtc ccaaagatgg 360
acccccaccc acgaggagca tcgtggaaaa agaagacgtt ccaaccacgt cttcaaagca 420
agtggattga tgtgatatct ccactgacgt aagggatgac gcacaatccc actatccttc 480
gcaagaccct tcctctatat aaggaagttc atttcatttg gagagaacac gggggact 538
nos cgttcaaaca tttggcaata aagtttctta agattgaatc ccgg tcttgcgatg 60 Represents 5
attatcatat aatttctgtt gaattacgtt aagcatgtaa taattaacat gtaatgcatg 120
(nopaline transcription
acgttattta tgagatgggt ttttatgatt ccgc aattatacat ttaatacgcg 180
synthase) atagaaaaca aaatatagcg cgcaaactag ttat cgcgcgcggt gtcatctatg 240 terminator
3'UTR TTACTAGATCGGG sequence
(polyAsignal)
sequence
hygromycin ctatttcttt gccctcggac tggg gcgtcggttt ccactatcgg cgagtacttc 60 Represents hpt 6
otransfe tacacagcca tcggtccaga cggccgcgct tctgcgggcg atttgtgtac gcccgacagt 120
gene (hygromycin
rase cccggctccg gatcggacga ttgcgtcgca tcgaccctgc gcccaagctg catcatcgaa 180
attgccgtca accaagctct gatagagttg gtcaagacca atgcggagca tatacgcccg 240 phosphotransferas
gagtcgtggc gatcctgcaa gctccggatg cctccgctcg aagtagcgcg tctgctgctc 300
e)for hygromycin
catacaagcc aaccacggcc tccagaagaa gatgttggcg acctcgtatt gggaatcccc 360
cgcc tcgctccagt caatgaccgc tgttatgcgg ccattgtccg tcaggacatt 420 resistance
gttggagccg aaatccgcgt gcacgaggtg ccggacttcg gggcagtcct cggcccaaag 480
catcagctca tcgagagcct gcgcgacgga cgcactgacg gtgtcgtcca tcacagtttg 540
ccagtgatac acatggggat cagcaatcgc gcatatgaaa tcacgccatg attg 600
accgattcct tgcggtccga atgggccgaa cccgctcgtc tggctaagat cggccgcagc 660
gatcgcatcc atagcctccg cgaccggttg tagaacagcg ggcagttcgg tttcaggcag 720
gtcttgcaac gtgacaccct gtgcacggcg gcaa taggtcaggc tctcgctaaa 780
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by m
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] m
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
ctccccaatg lcaagcacxt ccggaatcgg gagcgcgcc gatgcaaagt gccgataaac 840
atct ttgtagaaac ca tcggcgca gctamacc cgcaggacat atcca cgccc 900
tcctacatcg aagctgaaag cacgagattc ttcgccctcc gagagctgca lcaggtcgga 960
gacgcmtcp, aacttttcga tcagaaactt ctcnacaaac gtcgcggtga gttcaggctt 1020
meat 1026
expression Represents an
cassettes for expression construct
Asp/\T, GS (or ression of
and PEPCasc the genes Asp/W; 65
.C HC';::5 »
coding - a atctccacbac.-.._ := L z andPEPCasr.’
Wmecamr-mg Spel
l ccs.
CIOHEd cacnacagcatdccncttctccaacctccncttcmattccgtcttcaatcacctcgttcntg
ctcccga agarcctatcctcngggt aactgtcgcttataacaaagatccaagtccagttaagctcaacttpgg
u n dcr
agttgglgcttaccga actgaggaaggaaaacctcttnttttgaatmagtgangcgngttnaacagcaact
C0" "0| 0“ ca taaa tgacg tgtca aaggaatatattccgatcgttgggctmctga tttlaataaattgamflct
aagcttatttttggggctga tgctattca agacaacagggrraccactgttcaatgcttgtctgga ac
Camv 3 SS
tggttctttaagagttgggggtgaamttggctaaacactatcaccaacggactatatacflgccaa caccaa
er ctlggngcaatcacccgaamttttcaacttagcapgcttgtctgtca aaacataccgctactatgctccagc
( ) a n d N as aacacgaggacttgactttcaaggacttctggaaga ccttggttctgctcca tctgga tctattgttttgctaca
‘ tgcatgcgcacataaccccactrgmmgatccaacccnnagcaarmnagcagattaggcagcta ata an
terminator atcaaa agcmgttacctttctttgaca mgcttatca gggttttgctagtggaagtctagamcagatficcca
a cctgttcgtttgtttgttgctgatggaggcgaattgctggtagcacaaagcta mcaaa gaatctngntct tt
(a) in
atggggaacgtgttggcgccttaagcattgtctgcaagtcagctgatgttgcaagcagggttgagagccanc
PCAM BIA tgaagcmgtgattaggccca tgtactcaagtcctcccattcatggtgcatcca ttgtggctgccattctca ag
1302 gaccggaamgttcaatnactggactattgagttgaaggcaatggctgatcgcatcatcagtatgcgccaag
aacttttcgamcntatgtxccagamcacacctmcnatmgagtcacattatcaaacagattggaatgttt
actltcactggattgaatgcfigaacaagtttcc‘ttcatgactaaagagttccatatatacatgacatctgatgg
gaggattagcatggctggrctgagttccaaaactgtcccacttctggcngamcgatacatgcanctgtaa'or:
gagttgtdaagg?
Mtgaat:ggtgaccagctcgaamccccgatggguaaaca-mggcaataaagsnmaazanggarc
gtgggxafitggtfitcgtaxaazmmgmacgggaggajgtaataattaacaszag
meal‘zacagtatttaxaawmmpjj.smzaficmsgmmmmzmsm
a__caaaa_§a!a c caaacta fiafifiggggggggggmcatctajfi
.tactagalcgggaatta3%atngcgéatgctagagcagcttgagcttggatcagattgtcgtttccc
nccncagtttagcttWWW
Wm:mctcatctttca
GS coding sequence —"
gatncgnaarctca atctctctgactccactcagaaaattattgctga atacatatgganggmgarcapg
aatggacgtcaggagcaaagccagaacacmctngaccmttgatgatccttcaaagcltcccaaatggaa
Ktatgatggttctagcacaggawagctcctggagaagacagtga agagatcctatatcctcaagcaaltnc
aangatccancagaaggggcaacaatatcttggtcatttgtgattgttacaccccagctggtgaacccattc
caaca a acaaaa gtgctgcca agattttcagccaccctga tgttgttgttgaggaaccctggtatg
mmgagcaanaatacaccltmtgcaaaaagatatcaattggcctcttggatggcctcttggtggttttcct
ggaccacaggga cca ta ciattgcgnaattgga gctggaaaggtcmggacgcgatatcgttgactctcatt
ataaggcatgtctctatgctgggattaacatcagtggtatcaatggagaaglgatgcccggacagtgggaat
ttgga ccttcagttggcatttcagcagctgatgaa ttgtggncagctcgttacattcttgagagga tt
actgagattgctpgagttgtggtctcantgaccccaaacctattccgggtgactgnaatggtgctgga gctc
acacaaactacagcacaaagtctarga gga atgaaggaggctatgaagtcattaaga aggcaangagaa
ccttggactgaggca caagga gcatattgcagcatatggtgaaggcaacgagentcgtctcactgga agac /‘
[Annotation] m
None set by amandam
ation] amandam
MigrationNone set by amandam
[Annotation] m
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] m
None set by amandam
[Annotation] amandam
ionNone set by amandam
[Annotation] amandam
Unmarked set by amandam
' ‘h'l
gacacggagagagaagggaaggga tacttcgagaztaggaggcctgcttcgaatatggatccattcgtcgt
gacttccatgattgctgagaccactatcctatccgagccttg- : - as
Ianaxcatat aa ca aaca aa cat ac tamasg
agataggggggggggaggccggcaattatacamaataggggatagaaaacaagataxa.
aggggcaaacta catct acta an: aattaaactatcagt
gmgacaggatatattggcfiigcgcgcaaatggcgaa agcagqtrgagcttggatcagattgtcg
-..| ;-.-;v!.‘;-_ aLQ.‘1".','..'-, ".. El--'.:-
. a z : - - - ‘
_ . . . -. mmcttgacca
PEPCan: cod 3 sequznce ——>
tgg-tatggcgtcgaccaaggctcccggccccggcgagaagcaccactccatqgaqzcgcagctc
cgtcagctggtcccaggcaaggtctccgaggacgacaagctca(cgagtacgatgcgctgctcgtcgaccgc
ttcctcaacatcctccaggacctccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcag ‘
ccgacta cgagggcaa aggagacacgacgaagctgggcgagctcggcgccaagctcacggggctggcccc
cgccgacgccatcctcgtggcgagctccazcctgcacalgctcaacczcgccaacctggccgaggaggtgca
ga tcgcgca ccgccgccgcaacagca agctcaagaaaggtgggttcgccgacgagggctccgcca ccacc
gagtccg‘acatcgaggagacgctcaagcgcctcgtgtccgaggtcggcaagtcccccgaggaggtgttcga
ggcgctcaagaaccagaccgtcgacctcgtcttcaccgcgcatcctacgcagtccgcccgccgctcgctcctg
caaaaaaatgccaggatccgaaattgtctgacccagctgaatgccaaggacatcactgacgacgacaagc
tcgatgaggctctgcagagagagatccaagcagccttcagaaccgatgaaatcaggagggcac
aacccaccccgca ggccgaaatgcgctatgggatgagctacatccatgagactgtatggaagggtg‘gcct
an gttcttgcgccgtgtggatacagccctgaagaatatcggcatcaatgagcgccttccctacaatgtttctct
cattcggttctcttcttggatgggtggtgaccgcgaxggaaatccaagagtta ccccggaggtgacaagaga
tgtatgcttgctggccagaatgatggctgca aacttgtacatcgatcagangaagagctgatgtttgagent
ctatgtggcgctgcaacga(gagcltcgtgttcgtgccgaagagdccacagttcgtctggttccaaagttacc
aagtattacatagaattckggaagcaaattcctccaaacgagccctaccgggtgatactaggocacgtaagg
gacaagctgtacaacacacgcgagcgtgctcgccatctgctggcttctggagtttctgaaamcagcggaat
cgtcamaccagtatcga agagnccttgagccacttgagctgtgctacaaa tcactgtgtgactgcggcga
ca aggccatcgcggacgggagcctcctggacctcctgcgccaggtgttcacgttcgggctctccctggtgaa
gctggacatccggcaggagtcggagcggcacaccgacgtgatcgacgccatcaccacgcacctcggcatcg
ggtcgtaccgcgagtggcccgaggacaagaggcaggagtggctgctgtcggagctgcgaggcaagcgccc
gctgctgcccccggaccttccccagaccgacgagatcgccgacgtcatcggcgcgttccacgtéctcgcgga
gctcccgcccgacagcttcggcccctacatcatctccatggcgacggccccctcggacgtgctcgccgtggag
ctcctg cagcgcgagtgcggcgtgcgccagccgctgcccgtggtgccgctgttcgagasgctggccgacctg
cagtcggcgcccgcgtccgtggagcgcctmctcggtggactggtacatggaccggatcaagggca agcag
caggtcatggtcggctactccgactccggcaaggacgccggccgcctgtcc
gcggcgtggcagctgtacagggcgca ggaggagatggcgcaggtggccaagcgctacggcgtcaagctca
ccttgttccacggccgcggaggcaccgtgggcaggggtggcgggcccacgcaccttgccatcctgtcccagc
cgccgga cacca ggtccatccgtgtgacggtgcagggcgaggtcatcgagttctgcncggggagg
agcacctgtgcttccagactctgcagcgcncacggccgccacgctggagcacggcatgcacccgccggtct
ctcccaagcccgagtggcgcaagctcatggacgagalggcggtcgtggccacggaggagtaccgctccmc
gtcgtcaaggaggcgcgcttcgtcgagtacttcagatcggctacaccggagaccgagtacgggaggatgaa
catcggcagccggccagccaagaggaggcccggcggcggcatcacgaccctgcgcgccatcccctggatct
ggacccagaccaggttccacctccccgtgtggctgggagtcggcgccgcancaagncgccatcga
ca agga cgtcaggaacttccaggtcctcaa agagatgtacaacgagtggccattcttcagggtcaccctgga
cctgctggagatggttttcgccaagggagaccccggcattgccggcttgtatgacgagctgcttgtggcggaa
gaaacaagcocmgggaagcagctcagggacaaa‘acgtggagacacagcagcttctcctccagatcgct
gggcacaaggatattcttgaaggcgatccattcctgaagcaggggctggtgctgcgcaacccctacatcacc
accctgaacgtgttccaggcctacacgctgaagcggata agggaccccaacttca aggtgacgccccagcc
gccgctgtccaaggagttcgccgacgagaacaagcccgccggactggtcaagctgaacccgg
cgagcgagtacccgcccggcctggaagacacgctcatcctcaccatgaagggcatcgccgccggcatgca g
abut! Pmn
aacactggctam gaattggtgaccagctcgaatttccccgatgmcmcmigg
m:_a_aa.mt__s_maaagpaxcmmmmmmm
ca wannaaca aa ca. a ante, mm a w
anatamnaatacc - -.-_aaaa_caaaa.t,axac 1:.:-. 1: 1- :_:~: 2: :
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] m
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] m
None set by amandam
[Annotation] m
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
momma:
Forward primer for
amplification of ‘
tobacco GS coding
65”,». F S'- TGCCATGGCTCA‘i‘CTITCGGATCTCG'iT -3' B
sequence, including
restriction site for
enzyme Ncol.
Reverse primer
for amplification of
S'- GGGTGACCTCAAGGCTCGGATAGGATAGTG ~3' tobacco GS coding
sequence, including
restriction site for
enzyme BstEli.
Forward primer for
amplification of
S’- CATAGATCTTATGGCTTCTCACGACAGCATCT -3’ Soyabean Asp/fl”
coding sequence,
including restriction
site for enzyme Bglil.
Reverse primer for
amplification of
Soyabean MpA'i‘
As pAT pm]. R ACGTGTTAGACAACTCGGGTTACAGCTG-B' 11
coding sequence,
including restriction
site for enzyme PmIi.
Forward primer for
amplification of
PEPCase 5'- ATAGATCTTATGGCGTCGACCAAGGCTCCG -3‘ maize PEPGase
.59“. F coding sequence,
ing restriction
site for enzyme Bglll.
_W—_—_
Reverse primer for
amplification of
PEPCase maize PEPCase
’-AGACTAGTGCCAGTGTTCTGCATGCCGGCGG3’ 13
59:! R . coding sequence,
Including ction
site for enzyme Spei.
Forward primer for
' amplification of
355 5,”. F S‘-GGACTAGTAATGGCGAATGCTAGAGCAGCTTGAG —3' 14
CaMV 355 promoter
‘ sequence, including
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
ed set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] m
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
restriction site for
enzyme .5"ch
Reverse primer for
‘-GC(‘ACGTGTCCTCAGCTGGCGCGCCCGCCA- amplification of N05
Nos'i'Am, A'I‘A'l‘A'lCCI‘G'l’CAAACACTGATAGT -3' terminator sequence,
—____..A._.___._.4
ing ction
site for enzyme Ascl,
8val,Pm/i
w « __- ...
Reverse prirncrio'r'fl‘
amplification of Nos
S’—GGAC’I'AGTTTAATTCCCGA'I'Cl‘AGTAACA’l'AGA'l'GJ‘ terminator seq uence. 16
ing restriction
site for enzyme Spel.
Forvmw— ”W"
amplification of
(.an 355 promoter
'-A'l'C'l'GGCGCGCCAATGGCGAATGCTAGAGCAGC‘TTGAG 3‘ 17
sequence, including
restriction site for
enzyme Ascl.
e primer for
qmplifica tion of
maize PEPCase
PEPCase “Va
’ - GTGCCTCAGCQTAGCCAGTGTTCTGCATGCCGG -3' coding sequence, 18
including restriction
site for enzyme
Bval.
__ '-
Forward primer raF'""'
ampliflcatlon of
hygromycin
hpt F S' - GAGGGCGAAGAATCTCG‘I'GC -3’ 19
phosphotransferase
for screening
transgenic plants.
Reverse primer for
amplification of
ycin
' - GATGTTGGCGACCl'CGTATTGG -3' 20
phosphotransferase
for screening
transgenic plants.
Forward primer for
PEPCase Exp 5' — ACG'i'CAGGAACITCCAGGTC -3‘ maize PEPCaSC, used
F for RT-PCR based
evaluation of
[Annotation] amandam
None set by amandam
ation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
ation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
[Annotation] amandam
None set by amandam
[Annotation] amandam
ionNone set by amandam
[Annotation] amandam
ed set by amandam
PEPCase transgene
expression.
Reverse primer for
maize PEPCase, used
PEPCase Exp for RT-PCR based
S’ — CTI'GTTCTCGTCGGCGAAC -3' 22
R evaluation of
PEPCase transgene
expression.
Forward primer for
tobacco GS, used
for RT-PCR based
' - ACTTTCTGGACCFGTTGAT -3' 23
evaluation of GS
tra nsgene
expression.
Reverse primer for
tobacco GS, used for
RT~PCR based
' - ACTGTGCCTT -3' 24
evaluation of GS
transgene
expression.
fiorward primer for
soyabean AspAl' ,
used for RT-PCR
Asp/\T Exp F 5' - ATGGCTTCTCACGACAGCATC -3‘ 25
based evaluation of
GS transgene
expression.
e primer for
soyabean ASpAT,
used for RT-PCR
ASpAT Exp R 5' - TTGCGTGACACGTCATTTATGAGT -3' 26
based evaluation of
GS transgene
expression.
Forward primer for
ISSrRNA, used as
internal control for
S'-CACAATGATAGGMGAGCCGAC-3'
265 r- RT-PCR based 27
evaluation of
transgene
expression.
Reverse primer for
265 R S’WGGGAACGGGCTTGGCAGMTC-S’ ' ZSSrRNA, used as 28
internal control for
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
ation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] m
ed set by amandam
RT-PCR baséd
evaluation of
transgene expression
MAS!lDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVK|.NI.GVGAYRTEEG Represents Proteins
KPLVLNWRRVE
of AspAT genes
QQLINDVSRNKEYIPNGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGG
EFlAKHYHQRT
IYLPTPTWGNHEKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLIMCA
AspATPr HNPTGVDPTLE
QWEOJRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLG
LYGERVGALSIV
CKSADVASRVESQLKLVIRPMYSSPPIHGASIVA/\ILKDRNLFNDWTIELKAMADRIISM
RQELFDALG
WSHIIKQIGMFTFTGLNAEQVSFMTKEHIIYMTSDGRISMAGLSSKTVPLLA
DAIHAAVTRW
_‘ _ __
MAIILSDLVNINLSDSTQKIIAEYIWIGGSGMDVRSKARTLSGPVDDPSKLPKWNYDG Represents Proteins
SSTGQAPGEDSEE
of 65 genes
ILYPQAIFKDPFRRGNNILVICDCYTPAGEPIPTNKRIiSMKlFSHPDWVEEPWYGLEQ
EYTLLQKDIN
WPLGWPIGGFPGPQGPYYCGIGAGKVFGRDIVDSHYKACLYAGINISGINGEVMPGQ
GSPr WEFQVGPSVGISA 30
ARYILERITEIAGVVVSF DPKPIPGDWNGAGAI ITNYSTKSMRNEGGYEVI KK
AIENLGLRHKEH
IAAVGEGNERRLTGRHETADINTFKWGVANRGASI RVGRDTEREGKGYFEDRRPASN
MDPFWI'SMIAET
TILSEP
PGPGEKHHSIDAQLRQLVPGKVSEDDKLIEYDALUEIFLNILQDLI (GPSIRE Represents Proteins
FVQEOIEVSAD
of PEPCase genes
TTKLGELGAKLTGLAPADAILVASSILI lMlN LANLAEEVQIAHRRRNSKLKKG
GFADEGSATI'E
SDIEETLKRLVSEVG KSPEEVFEALKNQTVDLVFTN(PTQSARRSLLQKNARIRNCLTQL
NAKDITDDDK
QELDEALQREIQAAFRTDEIRRAQPTPQAEMRYG MSYIHETVWKGVPKFLRRVDTAL
ERLPVNV
SLIRFSSWMGGDROGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCN
DELRVRAEELHSSS
GSKVTKYYIEFWKQIPPNEPYRVILGIWROKLYNTRERARHLLASGVSEISAESSFTSIEE
FLEPLELCY
KSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAIT‘I’HLGIGSYRE
PEPCdsePr QEWL
LSELRG KRPLLPPDLPQTDE IADVIGAFHVLAELPPDSFG PYIISMATAPSDVLAVELLQR
ECGVRQPLP
VVPLFERLADLOSAPASVERLFSVDWYM DRIKGKQQVMVGYSDSGKDAGRLSAAW
QLYRAQEEMAQVAKR
YGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVI EFCFGEEHLCFQ
TLQRFTAATLE
HGMHPPVSPKPEWRKLMDEMAWATEEYRSVWKEARFVEYFRSATPETEYGRMNI
GSRPAKRRPGGGIT
TLRAIPWIFSWTQTRFI ILPVWLGVGAAFKFAIDKDVRNFQVLKEMVNEWPFFRVTLD
LLEMVFAKGDPGI
AGLYDELLVAEELKPFGKQLR DKYVETQQLLLOJAGHKDILEGDPFLKQGLVLRNPYITI'
LNVFQAYTLK
RIRDPNFKVTPQPPLSKEFADEN KPAGLVKLNPASEYPPGLEDTLI LTMKGIAAGMQN
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EXAMPLE 1
Amplification and cloning ofAspA T gene
Nucleotide sequence encoding soyabean cytosolic AspAT gene (SEQ ID NO: 1) was obtained
from the NCBI database of nucleotide ces (GenBank Accession No. AFO34210.1;
(hgpzllwwwncbinlm.nih.gov/nuccore/AF034210.l) RNA from soyabean plant was ed
using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/LN). cDNA was
synthesized using total RNA preparations (2 pg) in the presence of 1 pg oligo(dT).2.|3 and
400 U of reverse transcriptase Superscript II (Invitrogen) afier digesting with 2 U DNase I
(amplification grade, ogen, USA) following the manufacturer’s instructions. The full
coding region of AspAT was then ed from soyabean cDNA using primers AspAT Es!"
F (SEQ ID NO: 10) and AspAT pm“ R (SEQ ID NO: 11) such that restriction sites Bglll
(AGATQI) and Pmll (QACGTG) is incorporated in the coding sequence for AspA T. Qiagen
High Fidelity Taq rase enzyme was used for the PCR using the following conditions:
initial denaturating at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 seconds, annealing at 59
°C for 305econds, extension at 72 °C for 1 minute 20 seconds, with a final extension of 72 °C
for 7 minutes. The amplification product was cloned in to pGEM-T easy vector (Promega,
USA). Plasmid from the positive clones and pCAMBIA 1302 plasmid were digested with
Bglll and Pmll and digested products isolated from an agarose gel electrophoresis were
ligated and ormed in to E. coli DHSa cells which were ed from Takara Bio
Company, Japan (Cat. No. 9057). Plasmid from the positive colonies were sequenced to
verify the in frame cloning of the AspAT coding sequence placed between CaMV 3SS
promoter (SEQ ID NO: 4) and Nos terminator (SEQ ID NO: 5) of pCAMBIAI302 and
ing vector was designated as AspATzzpCAMBIAl302. '
EXAMPLE 2
Amplification and cloning of GS gene
Nucleotide sequence encoding tobacco cytosolic GS gene (SEQ ID NO: 2) was obtained from
the NCBI se of nucleotide sequences (GenBank Accession No. X95932.1;
ihttp://www.ncbi.nlm.nih.gov/nuccore/X95932.l) .RNA from tobacco plant was isolated
using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/lN). cDNA was
synthesized using total RNA preparations (2 pg) in the presence of 1 pg dT)lz..3 and
400 U of e riptase Superscript II (Invitrogen) afier digesting with 2 U DNase I
fication grade, Invitrogen, USA) following the manufacturer‘s instructions.
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The full coding region of GS was amplified from tobacco cDNA using primers GSA/m. F with
restriction sites NcoI (CCATGG) (SEQ ID NO: 8) and 05mm R with restriction sites for
BstEII (GGTGACC) (SEQ ID NO: 9). 68”“. F primers was modified so as to eliminate the
BgIII site by replacement of ‘A’ nucleotide by ‘G ‘ at posiu'on 15.
Qiagen High ty Taq polymerase enzyme was used for the PCR using the following
ions: initial denaturating at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 s,
annealing at 59 °C for 305econds, extension at 72 °C for e 10 seconds, with a final
extension of 72 °C for 7 minutes. The cation product was cloned in to pGEM-T easy
vector (Promega, USA). Plasmids from the positive colonies and binary vector pCAMBIA
1302 were ed with Neal and BstEII and digested product isolated from an agarose gel
electrophoresis were ligated such that GS is placed downstream of CaMV 3SS promoter of
pCAMBIA vector. The ligation product was transformed in to E. cali DHSa cells and
transformants were sequenced to verify the in frame claning of the GS coding sequence and
the resulting vector was designated as GS::pCAMBIAl302.
EXAMPLE 3
Amplification and cloning of maize e gene
Nucleotide sequence encoding maize PEPCase gene (SEQ ID NO: 3) was obtained from the
NCBI database of nucleotide sequences (NCBI Reference Sequence: NM_OOIlll948.I;
(http://www.ncbi.nIm.nih.gov/nuccore/NM 001111948.” RNA fi'om maize plant was
isolated using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/IN). cDNA
was synthesized using total RNA preparations (2 pg) in the presence of 1 ug oligo(dT).2..3
and 400 U of reverse transcriptase Superscript II (Invitrogen) after ing with 2 U DNase
I (amplification grade, Invitrogen, USA) following the manufacturer’s ctions.
The full coding region of PEPCase was ed fiom maize cDNA using primers PEPCase
331" F with restriction sites for BglII (AGATCI ) (SEQ ID NO: 12) and PEPCaSe 5,,“ R with
restricition sites for SpeI (ACTAGI) (SEQ ID NO: 13). Qiagen High Fidelity Taq
polymerase enzyme supplemented with Q-soiution (facilitating amplification of GC-rich
templates) was used for PCR using the following conditions: initial rating at 94 °C for
3 minutes, 32 cycles of 94 °C for 30 seconds, annealing at 58 “C for 30 seconds, extension at
72 °C for 3 minute, with a final extension of 72 °C for 7 minutes. The cation product
was cloned in to pGEM-T easy vector ga, USA). Plasmid from the positive clones and
pCAMBIA 1302 plasmids were digested with BgIII and SpeI and ed product isolated
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from an agarose gel ophoresis were ligated and then transformed in to E. coli DHSo
cells. Transformants were ced to verify the in frame cloning of the PEPCase coding
sequence and resulting vector was ated as PEPCasezzpCAMBlA 1302.
EXAMPLE 4
Assembly of expression cassettes for Asp/1T, GS and e in single pCAMBIA 1302
vector (generous g1]? from “Centre for Application of Molecular Biology to International
Agriculture ", A ustralia)
A stepwise method for amplification and integration of expression tes each for AspA T,
GS and e in to single plant transformation vector pCAMBIA 1302 is described as
follows:
GS expression cassette sing CaMV3SS promoter, downstream cloned GS and nopaline
synthase (hereinafler, referred as “Nos”) terminator was amplified from 08:: pCAMBlA
1302 vector
( Example 2 ), using s 358 5,,“ F( SEQ ID NO: l4) and NosT Am, BM'PMHR (SEQ ID
NO: 15). The primers were designed to incorporate the Spel (ACTAGT) in the forward
primer and Ascl (GGCGCGCC ), Bva'I (CCTCAGC)and Pmll (CACGTG) in reverse primer
to tate the ning of OS expression cas3ette in to SpeI and PmlI sites ofpCAMBlA
1302 vector as well as to create the additional restriction sites ( Ascl 3’ end in
, BvaI ) at
the vector backbone . Qiagen High Fidelity Taq polymerase enzyme was used for the PCR
using the following conditions: initial denaturating at 94 °C for 3 minutes , 30 cycles of 94 °C
for 30 seconds, annealing at 59 °C for 30 seconds, extension at 72 °C for 2 minutes, with a
final extension of 72 °C for 7 minutes. The amplification product was cloned in to pGEM-T
easy vector (Promega, USA). Plasmids from the positive clones was digested with 81221 and
Pmll, and the digested product was then ed from an agarose gel electrophoresis and
ligated in to Spel and PmlI sites of pCAMBIA 1302 vector. The ligation t was
transformed in to E. coli DHSa cells and transformants were verified by sequencing of
plasmid.
AspAT coding sequence along with 3’Nos terminator sequence was amplified from AspATz:
pCAMBIA I302 vector (Example 1 ) using primers AspAT fig/ll F (SEQ ID NO: 10) and
NosT 5-,”. (SEQ ID NO: 16) with restriction sites for BgIII (AGATCT) and SpeI (ACTAGjl)
respectively.
Qiagen High Fidelity Taq polymerase enzyme was used for the PCR using the following
conditions: initial denaturation at 94 °C for 3 s °C for 30 seconds,
, 30 cycles of 94
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ing at 59 °C for 30 seconds, extension at 72 °C for 2 minutes, with a final extension of
72 °C for 7 minutes. The amplification product was cloned in to pGEM—T easy vector
(Promega, USA). Plasmids from the positive clones upon ion with BgIII and SpeI ,
cloned downstream of CaMV 35$ promoter of destination pCAMBIA 1302 ( previously
cloned with GS expression cassette). The ligation product was then transformed in to E. coli
DHSa cells and transformants were sequenced to verify the in frame cloning of the AspAT
coding sequence.
CM 358 promoter along with the downstream cloned e gene from PEPCaSe::
pCAMBIA 1302 vector (example 3) was amplified with the primers 358 A“! F (SEQ ID NO:
17) having restriction site for AscI GCC) and PEPCase awe. R (SEQ ID NO: 18)
having ction site for Bb VCI (CCTCAGC). ‘
Qiagen High Fidelity Taq polymerase enzyme was used for the PCR using the ing
ions: initial denaturation at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 seconds,
annealing at 60 °C for 30 seconds, extension at 72 °C for 4 minutes, with a final extension of
72 °C for 7 minutes. The cation product was cloned in to pGEM-T easy vector
(Promega, USA), plasmid from the positive clones was digested with AscI (GGCGCGCC)
and BbVCI (CCTCAGC) and digested product isolated from an agarose gel electrophoresis
ligated upstream of Nos terminator sequence of destination A. 1302 previously
cloned with GS and AspAT expression cassettes. The ligation product was transformed in to
E. coli DHSa cells and transformants ced to verify the in frame cloning of the
PEPCase coding sequence. Resultant plant expression vector was designated as AspAT + GS
+ PEPCase for co-overexpression of AspAT, GS and PEPcase. A hygromycin resistance
gene (SEQ ID No.6) was included as a selectable marker for screening transgenic plants.
Schematic m of expression uct is shown in Figurel, represented by SEQ ID NO.
7 for plant transformation such that the transgenic plant produces higher amount of proteins
ented by SED ID NO. 29. 30, and 31.
EXAMPLE 5
g of enic Arabidopsis plants co« over expressing genes AspAT. GS and
PEPCase
Generation of plant expression vector (AspAT + GS + PEPCase)
Briefly, the plant expression vector was constructed as follows: cDNA sequences encoding
soybean AspAT gene (SEQ ID NO: 1), tobacco cytosolic GS gene (SEQ ID NO: 2) and maize
PEPCase gene (SEQ ID NO: 3), were first independently cloned in to pCAMBIA 1302
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vector. The elements for expression te for AspAT, GS and PEPCase were then
amplified and assembled in to destination pCAMBlAl302 such that genes AspAT, GS and
PEPCase were controlled by independent CaMV 35$ promoter and Nos transcriptional
terminator.
Agrobacterium ed plant transformation:
AspAT + GS + PEPCase were transferred to Agrobacterium tumefaciens strain GV3101 with
ATCC number Agrobacterium tumefaciens (GV3101 (pMP90RK) (C58 derivative) ATCC®
Number: 33970 Reference: Hayashi H, Czaja I, Lubenow H, Schell J ,Walden R. 1992 using
standard triparental mating method.
Briefly, E. coli DHSa cells harboring the recombinant uct AspAT + G8 + e and
those harboring helper plasmid pRK2013 were Cultured overnight at 37°C. Agrobaterium
strain GV3101 grown at 28°C for 48hrs. All the three cultures were then pelleted, washed,
and mixed, followed by plating on YEM (Yeast Extract Mannitol) plates supplemented with
the antibiotics kanamycin (SOuyml) and cin (50ug/ml). Antibiotic resistant colonies
were verified by colony PCR to assure the transformation of Agrobacterium with the
recombinant construct AspAT + GS + PEPCase.
Arabidopsis seeds of the Columbia ecolype were generous gifi by Dr. Christine H Foyer
of; IACR-Rothamsted, Harpenden, UK.
Arabidopsis plants were transformed with Agrobacteria harboring ‘ + GS + PEPCase
using vaCuum infiltration method. Briefly, liquid S-ml cultures were established from single
transformed clerium colony and grown in YEM medium supplemented with SOug/ml
kanamycin, l rifampicin at 28°C up to the late logarithmic phase. Next, 1 ml of
bacterial sion Was diluted with 100 ml of YEB culture medium mented with the
same antibiotics. The culture was grown ght until their l density reached 1.2—1.8
at 600 nm. The bacteria were spinned for 20 min at 2000 g at room temperature and
suspended in a solution for infiltration containing half strength MS (Murashige and Skoog)
medium with 2% sucrose, 0.05% MES (Sigma,) and 0.01% of Silwet L-77 (Lehle Seeds,
United States). Arabidopsis inflorescences were dipped in bacterial suspension and ated
under vacuum for 10 minutes. Plants were then transferred to growth chamber and grown
under controlled long day conditions (16-h light at 22—23°C and 8-h darkness at 20°C) for
seed set.
Selection of Primary transformant To transgenic Arabidopsis plant: Seeds from
transformed plants were surface sterilized by ion in 70% (v/v) ethanol for 2 min,
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followed by immersion in 10% (v/v) sodium hypochlorite solution. Seeds were then washed
four times with sterile distilled water and sown onto 1% agar containing MS medium
supplemented with hygromycin B at a cancentration of 20 pg ml'I (Sigma # . Seeds
were then fied for 2 days in the dark at 4°C. After stratification plates were transferred to
a growth r with 16 h light and 8 h dark cycle for ation. After 14.days,
hygromycin resistant seedlings were selected as putative primary transformants (To) sand
transferred to pots ning vermiculite, perlite and cocopeat mix (1:111) and grown to
ty under cantrolled iou of light, temperature and humidity for growth and seed
set.
Raising T1 and '1'; generation AspAT + GS + PEPCase transgenic : Seeds
harvested from To enic plants were germinated on MS + hygromycin B (at a
cancentration of 20ug ml") plates and transgenic lines ting a segregation ratio of 3:1
(scored by their sensitivity to hygromycin B) were ed to raise T1 generation of
transgenic plants . Homozygous transgenic plants were obtained in the T2 generation and
evaluated for different physiological and biochemical parameters in comparison to wild
control plants.
EXAMPLE6
Analysis of the Genomic DNA from Arabidopsis thaliana plants ormed with
AspAT + GS + PEPCase
opsis plants from two independent transgenic lines transformed with AspAT + GS +
PEPCase were selected to verify the insertion of transgenes in to plant genome. The genomic
DNA was isolated using DNeasy Plant mini kit (QIAGEN Co.). PCR was carried out by
using the isolated DNA as template with primers hpt F (SEQ ID NO: 19) and hp! R (SEQ ID
NO: 20) annealing to the hygromycin phosphtransferaes (hp!) gene (SEQ ID NO: 6) (plant
selection marker from pCAMBIA 1302 vector).
PCR Cycling conditions defined by initial denaturation at 94 °C for 3 minutes
, 28' cycles of
94 °C for 30 seconds, annealing at 58 “C for 30 secOnds, extension at 72 °C for 1 , *
with a final extensiOn of 72 “C for 7 minutes.
The result is shown in Figure 2A, in which WT represents the wild and L1 and L2 represent
two different transgenic lines. The amplification of hpt gene was observed only with
transgenic confirming insertion of AspAT+GS+PEPCase in to Arabidopsis plants.
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EXAMPLE?
Evaluation of AspAT + GS + PEPCase transgenics by reverse riptase -
rase chain reaction (RT-PCR)
RNA analysis of transformants was done to confirm the expression of Asp/1T, GS and
e. Total RNA was isolated from leaf and root of transgenic plants using iRIS Plant
RNA Kit (Ghawana er al., US Patent no 0344NF2004/IN). cDNA was synthesized using total
RNA preparations (2 pg) in the presence of 1 pg oligo(dT).2.lg and 400 U of reverse
transcriptase Superscript II (lnvitrogen) afier digesting with 2 U DNase I (amplification
grade, lnvitrogen, USA) following the manufacturer’s instructions). Expression of
transgenes was evaluated using gene specific primer for AspAT, GS and PEPCase. designated
as PEPCase Exp F (SEQ ID NO: 21), PEPCase Exp R (SEQ ID NO: 22), GS Exp F (SEQ ID
NO: 23), GS Exp R (SEQ ID NO: 24), AspAT Exp F (SEQ ID NO: 25) and ASPAT Epr
(SEQ ID NO: 26). As a positive l for RT-PCR, 26$ rRNA was amplified using primers
268 F (SEQ ID NO: 27) and 268 R (SEQ ID NO: 28).
The results of analyses are shown in Figure ZB, in which WT represents wild and L1 and L2
represent two transgenic lines. The amplification of RT—PCR products were observed only in
trangenics confirming the expression of introduced genes.
Enzymatic assays from wild type and AspAT + GS + PEPCasetransgenic Arabidopsis
plants
tic assays were med with AspAT + GS + PEPCase transgenic and wild plants
as follows:
PEPCase Activity Measurement: Frozen leaf samples (200 mg) ground with a mortar and
pestle in lml of extraction buffer ning 50 mM Tris-Cl buffer (pH 7.5), 1.0 mM MgCl2,
.0 mM DTT, 1.0 mM PMSF, 2% (w/v) PVPP, 10% (v/v) glycerol and 0.1% (v/v) Triton X—
100. The extract was centrifuged at 12,000 g for 10 min at 4 °C and the supernatant was used
for the determination of enzyme activity. PEPCase was assayed Spectrophotometrically at
340 nm in the presence of excess MDH and lactate dehydrogenase (Ashton et al. 1990). The
reaction mixture contained 50 mM Tris-Cl (pH 8.0), 5 mM MgC12, 5 mM DTT, 1 mM
NaHCO;, 5 mM glucose—6-phosphate, 0.2 mM NADH, 2 units MDH, 0.1 units lactate
dehydrogenase and crude extract. The on was ted by the addition of 5 mM PEP.
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AspAT Activity Measurement: Extraction buffer for AspAT consisted of 200 mM Tris-Cl
buffer (pH 7.5), 2.0 mM EDTA and 20% glycerol.
The enzyme was d in an MDH-coupled reaction essentially as described by Ireland and
Joy (1990). Briefly the reaction mixture contained 10 mM 2-oxoglutarate, 2 mM aspartate,
0.2 mM NADH, and 50 mM HEPES buffer (pH 8.0). Reaction was started by addition of 2-
oxoglutarate. Assay control was run by excluding the 2-oxoglutarate from the reaction mix.
GS Activity Measurement: GS (glutamine synthetase) was extracted in the ng
medium containing 50 mM'Tris-Cl buffer (pH 7.8), 1 mM EDTA, 10 mM MgSO.:, 5 mM
sodium glutamate, 10% (v/v) glycerol and ble PVPP (2% w/v). Enzyme assay was
performed as described earlier by Lea et a1. (1990) and the activity was ated from the
standard curve prepared with y—glutamylhydroxamate.
The results of the analyses are shown in the Figure 5A to SC, an increase of about 45 to 50%
in PEPCase activity, 55% in GS activity and 55 to 60% in AspAT ty was observed with
two independent AspAT + GS + PEPCase transgenic plants compared to wild plants.
EXAMPLE 9
C and N analyses in wild and AspAT + GS + PEPCase transgenic Arabidopsis plants
Seeds of AspAT + GS + PEPCase transformed Arabiopdris thaliana plants and wild control
plants were germinated on half strength MS plates supplemented with 20g/l sucrose. 14 days-
old ngs were transferred to pots containing mix of vermiculite,- perlite and coco peat in
the ratio of 1:1 :1 and grown under long-day conditions comprising 16 hours of light period at
22°C and 8 hours of dark period at 20°C maintained in the Arabidopsis growth chamber.
Different plant parts including rosette leaf, stem, cauline leaf and green pods were ted
from 65 —days old plants and dried at 80 °C for 48 hrs. The tative determination of the
C and N elements was conducted with Elementar CHNS analyzer using sulfanilamide as
standard. The results are shown in Figure 6. The elementary is showed that the total C
and N content in AspAT + GS + PEPCase transgenic plant leaves has significantly increased
by co-overexpression of AspAT, GS and PEPCase compared to wild plants.
EXAMPLE 10
Investigation of growth and yield in wild and GS+PEPCase transgenic plants
Wild and AspAT + GS + PEPCase transgenic plants were analyzed for different growth
characteristics. Shoot, root fresh and dry weight was recorded for s old plants. Across
different parameters evaluated, AspAT + GS + PEPCase plants showed enhanced growth
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characteristics. In particular, the transgenic plants have more number of leaves per rosette
having larger area. Transgenic plants exhibited about 70% increase in the shoot fresh weight
with 60% increase in the shoot dry weight whereas the increase of about 40% and 30 % was
observed in the root fresh and dry weight respectively ( shown in Figure 3).
Total number of pods from 72-days old AspAT + GS + PEPCase transgenic plants was
calculated and compared to untransformed wild plants (shown in Figure 7 a). Furthermore
total seed yield (total seed weight per plant) was also measured for enic and control
plants. Across both the parameters, AlspAT + GS + PEPCase transgenic Arabidopsis plant
showed increase in yield compared to wild plants as shown in Figure 7 b.
ADVANTAGES OF THE INVENTION
1. There have have been efforts to enhance carbon and nitrogen status of plants, a step
towards food security.
2. The present ion provides an innovative approach wherein overexpression of
e provides a carbon skeleton to e nitrogen assimilated through over
expression ofAspA Tand GS.
3. The improved capacity of plant for carbon and nitrogen capture was also reflected in
improved plant productivity both in terms of plant seed and plant biomass production.
Claims (11)
1. An expression construct comprising SEQ ID NO. 7 for co-expression of the genes AspAT, GS and PEPCase comprising nucleotide ces SEQ ID NO: 1, SEQ ID 5 NO: 2 and SEQ ID NO: 3, linked to at least one l sequence and a transcription terminator sequence, useful for ing the carbon, nitrogen, s and yield of plants as compared to wild type or untransformed plant.
2. An expression construct as d in claim 1, wherein the control sequence comprises a sequence as provided in SEQ ID NO: 4 and the transcription terminator sequence 10 comprises a sequence as provided in SEQ ID NO: 5.
3. An expression construct as claimed in claim 1, wherein the said control sequence is a constitutive promoter selected from the group consisting of CaMV 35S promoter, rubisco promoter, ubiquitin promoter, actin promoter.
4. An expression construct as claimed in claim 1, wherein the terminator used is selected 15 from the group consisting of Nos terminator and CaMV 3'UTR.
5. An expression construct as claimed in claim 1, wherein the polynucleotide comprising SEQ ID No: 7 is overexpressed in plants.
6. A process for preparing the expression construct as claimed in claim 1, wherein the process comprising the steps of: 20 i) amplifying cDNA sequences encoding genes comprising SEQ ID NO: 1 using primers comprising SEQ ID NO: 10 and SEQ ID NO: 11, SEQ ID NO: 2 using primers comprising SEQ ID NO: 8 and SEQ ID NO: 9 and SEQ ID NO: 3 using primers comprising SEQ ID NO: 12 and SEQ ID NO: 13; 25 ii) cloning independently the amplified product of SEQ ID NO: 1, 2 and 3 as obtained in step (i) into pGEM-T easy vector; iii) digesting independently the d from the ve clones as obtained in step (ii) along with pCAMBIA 1302 and further ligating the 30 ed gene ts and pCAMBIA 1302 and transforming into E. coli DH5 α cells; iv) sequencing the plasmid from the positive colonies obtained in step (iii) confirming the inframe cloning of AspAT::pCAMBIA1302; GS::pCAMBIA1302 and PEPCase::pCAMBIA 1302; [Annotation] amandam None set by amandam [Annotation] amandam MigrationNone set by amandam [Annotation] amandam Unmarked set by amandam v) amplifying the ts obtained in step (iv) by using primers comprising SEQ ID NO: 10 and SEQ ID NO: 16; SEQ ID NO: 14 and SEQ ID NO: 15 and SEQ ID NO: 17 and SEQ ID NO: 18; vi) cloning, digesting, ligating and sequencing was again performed 5 independently for the amplified GS coding sequence to form GS+pCAMBIA1302 which was further digested and ligated with the plasmids of positive clones of amplified AspAT coding sequence to form AspAT +GS+pCAMBIA1302 expression cassette; vii) ligating the ed plasmids of positive clones of amplified PEPCase 10 coding sequence with the destination pCAMBIA1302 which was previously cloned with the AspAT +GS+ expression te as obtained in step (vi) such that the genes AspA, GS and PEPCase were controlled by independent CaMV 35S promoter and Nos transcriptional ator to form single plant expression construct AspAT + GS + PEPCase 15 represented by SEQ ID NO: 7.
7. A process for enhancing the carbon, nitrogen, biomass and yield of plants using the sion construct as claimed in claim 1, wherein the said process comprising the steps of: 20 a) transforming Agrobacterium tumefacians strain with the expression construct as claimed in claim 1; b) transforming plant explants with the recombinant Agrobacterium cians strain as obtained in step (a); c) selecting the transformed explants of step (b) to obtain the desired transformed 25 plants having enhanced level of carbon, en, biomass and seed yield of plants as compared to wild type plant.
8. A s as claimed in claim 7, wherein the transformed plants is selected from the group sing of arabidopsis, tomato, potato, tobacco, maize, wheat, rice, cotton, 30 mustard, pigeon pea, cowpea, pea, sugarcane, soyabean and sorghum.
9. A process as claimed in claim 7, wherein the ormed plants display an increase of about 45-50% in PEPCase activity, t 55% in GS activity and 55-60% in AspAT activity as compared to wild type, resulting in increase in carbon and nitrogen levels in 35 the plant. [Annotation] amandam None set by amandam [Annotation] amandam MigrationNone set by amandam [Annotation] amandam Unmarked set by amandam
10. A process as claimed in claim 7, wherein the transformed plants as compared to wild type y increased seed yield and/or biomass, indicated by increased seed yield and/or pod yield. 5
11. A process as claimed in claim 7, wherein the ormed plants display enhanced growth characteristics characterized by increased shoot fresh , shoot dry weight, root fresh and dry weight as compared to wild type or untransformed plant.
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
IN1143DE2011 | 2011-04-19 | ||
IN1143/DEL/2011 | 2011-04-19 | ||
NZ61686412 | 2012-04-19 |
Publications (2)
Publication Number | Publication Date |
---|---|
NZ716717A NZ716717A (en) | 2017-03-31 |
NZ716717B2 true NZ716717B2 (en) | 2017-07-04 |
Family
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