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AN EXPRESSION UCT AND S FOR ENHANCING THE , NITROGEN,
BIOMASS AND YIELD OF PLANTS
The following specification particularly describes the invention and the manner in which it is
to be performed:
FIELD OF THE INVENTION
The present invention relates to an sion construct for enhancing the carbon (C),
nitrogen (N), biomass and yield of .
Further, the present invention provides the process for enhancement of C and N levels and
subsequent improvement in the biomass and yield of plant by using the aforesaid
sion construct which utilizes co-overexpression of genes from enzymes
phosphoenolpyruvate carboxylase (hereinafter, referred as ”PEPCase”), glutamine
synthetase (hereinafter, referred as ”GS”) and aspartate aminotransferase (hereinafter,
referred as ”AspAT”). In particular, the present invention is directed to transgenic plants
where nucleic acid sequences ng the said proteins are expressed in plant cells.
More particularly, the present invention relates to the transformation of a plant with
genetic construct involving rexpression of three genes wherein one gene PEPCase
encodes enzyme responsible to capture C02 and the other two encode for enzymes (AspAT
and GS) involved in N assimilation wherein the N assimilation requires C skeleton which is
met by PEPCase, under the l of constitutive promoter comprising plant Arabidopsis
thaliana transformed with AspAT+ G5 + PEPCase gene and expression of this gene in plants,
thereby enhancing the status of C and N, biomass and yield of plant.
BACKGROUND OF THE INVENTION AND PRIOR ART
The present ion relates to a transformed plant with co-overexpression of three genes,
viz.
AspAT, G5 and PEPCase, leading to enhanced C, N content, biomass, and yield component.
PEPCase (EC. 4.1.1.31) is a ubiquitous enzyme in plants that catalyses the B-carboxylation of
yieldphosphgolpyruvate nafter, referred as ”PEP”) in the presence of HC03_and Mg2+ to0 acetate (hereinafter, referred as ”OAA”) and inorganic phosphate (hereinafter,
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referred as ”Pi”), and it primarily has an anaplerotic function of replenishing the
tricarboxylic acid cycle with intermediates. In higher plants, there are several isoforms of
PEPCase of different organ specificities and they are involved in a variety of functions
including stomata g, fruit ripening and seed maturation. The leaves of C4 and CAM
plants contain high levels of PEPCase, which catalyze the initial C02 fixation of
photosynthesis. The much lower levels of PEPCase seen in the leaves of C3 plants bute
to an anaplerotic function and play a role in regulation ofthe cellular pH.
GS (EC 6.3.1.2) catalyses the ATP-dependent condensation of ammonia (hereinafter,
referred as ”NH3”) with glutamate nafter, referred as ”Glu”) to produce ine
(hereinafter, referred as ”Gln”). uently, glutamate synthase (GOGAT) transfers the
amide group of Gln to CL lutarate producing two molecules of Glu. Both Gin and Glu
are the primary source of organic N for proteins, nucleic acid and chlorophyll.
AspAT (EC 2.6.1.1) zes the reversible transfer of the amino group of asparate
(hereinafter, referred as ”Asp”) to OL-ketoglutarate to form OAA and Glu. In plants, AspAT
has been proposed to play several metabolic roles including: recycling of C skeletons during
NH3+ assimilation in roots, providing amide precursors for biosynthesis of major nitrogen
transport molecules such as asparagines (hereinafter, referred as ”Asn”) and ureides,
recruiting Asn nitrogen during seed filling and participating in intracellular C shuttles in C4
plants providing precursors for the biosynthesis of the Asp family of amino acids.
Plant mance in terms of s production, yield or t index depends upon
number of internal and environmental factors. Among all these factors, plant C and N level
is one of the important factors governing plant productivity. The emerging s of C and N
assimilation suggest that a regulatory system coordinates the uptake and distribution of
these nutrients in response to both metabolic and environmental cues. Plants sense
changes in their C and N status and relay this information to the nucleus where changes in
gene expression are brought about. Since plant growth and crop yield are largely influenced
by the assimilated C and N, many attempts have been made in the past to engineer efficient
C and N assimilation. However, there is no report yet which show significant improvement
in the st of C, N, s and yield in plants.
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Table 1 illustrates the status of information available on the various strategies to improve C
and/or N and biomass in different plants.
Table 1:
Functions Transformation Results Reference
System adopted
NAD kinase2 Arabidopsis NADK2 NADK2 overexpressors Takahashi, H.,
(NADK2) pressor and were characterized by Takahara, K.,
nade mutant were increase in calvin cycle a, S.,
Catalyzes the studied to investigate intermediates and Hirabayashi,T.,
synthesis of the impact of altering amino acid like Glu Fujimori,T.,
NADP from NAD NADP level on plant and Gln. However, Yamada,M.K.,
in chloroplasts metabolism. there is no clear Yamaya,T.,
evidence on role of Yanagisawa, S.
NADK2 influencing C and y, H.
and N metabolism. 2009. Plant
Physiol. 151: 100-
113.
Dof 1 Maize Dofl cDNA was Dofl overexpression Yanagisawa, S.,
overexpressed in in Arabidopsis has led a, A.,
Dofl is a Arabidopsis plants to co-operative Kisa ka, H.,
ription under derivative of cation of plant C Uchimiya, H. and
activator for the 355 promoter and N content, with Miwa, T. 2004.
multiple gene designated as improved growth Proc. Natl. Acad.
expressions 35$C4PPDK. under low N Sci. USA. 101:
associated with conditions. However, 7833—7838
the organic acid effect of CN
metabolism, alteration on plant
including biomass or yield was
PEPCase. not discussed.
GS i.) A soybean cytosolic Over expression of Vincent, R.,
GS gene (G515) fused cytosolic GS Fraisier, V.,
GS catalyses the with the constitutive rated plant Chaillou, 5.,
ATP- dependent CaMV 35$ promoter in development, leading Limami, M. A.,
condensation of order to direct its over- to early senescence Deleens, E.,
NH3 with (Glu) to expression in Lotus and premature Phillipson, B.,
produce (Gln). corniculatus L. plants. flowering when grown Douat, C.,
NH4+ rich medium. Boutin, J.-P. and
Limitation of C Hirel, B.
skeleton and energy 1997. .
for enhanced NH4+ 201: 424-433.
D lation were
anticipated.
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ii.) A pea cytosolic GS Overexpression of Oliveira, |..,
gene was cytosolic GS in relation , T.,
overexpressed in to N, light and Knight, T., Clark,
tobacco plants photorespiration A. and Coruzzi,
suggested an G. 2002, Plant
alternative route to Physiol.
chloroplastic GS for 129:1170-1180
assimilation of
photorespiratory
ammonium.
iii.) Full-length cDNAs An increased lic Cai, H., Zhou, Y.,
encoding rice cytosolic level in GS- Xiao, J., Li, X.,
GS genes (OsGSl;1 overexpressed plants Zhang, Q. and
and OsGSl;2) along was obtained which
, Lian, X. 2009,
with E. coli GS gene showed higher total GS Plant Cell Rep.
(glnA) were activities and soluble 28: 527-537
overexpressed in the protein concentrations
rice plant under in leaves and higher
constitutive CaMV 35$ total amino acids and
er. total N content in the
whole plant. However,
decrease in both grain
yield production and
total amino acids were
observed in seeds of
GS-overexpressed
plants compared with
wild-type .
iv) cDNA encoding alfa Transgenic plants Fuentes, S., Allen,
alfa cytosolic GS over grew better under N D., Ortiz-Lopez, A.
sed in tobacco tion by and Hernandez,
plants maintaining G. 2001. J. Exp.
photosynthesis at rate Bot. 52:1071-
comparable to those 1081.
of plants under high N,
while photosynthesis
in control plants was
ted by 40-50%.
These results further
reflect the need for
cooperative
modification of CN
metabolism for
developing plants with
better agronomic
traits.
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e i) The intact maize Transgenic plants Agarie, S., Miura,
gene encoding C4- exhibited higher A., Sumikura, R.,
PEPCase catalyses specific PEPCase used PEPCase activity with Tsukamoto, S.,
the [3- for transformation of reduced 02 inhibition Nose, A., Arima, S.,
carboxylation of rice plants of photosynthesis. It Matsuoka, M. and
PEP in the was found that the Tokutomi, MM.
presence of HC03 d 02 inhibition 2002. Plant Sci.
‘and Mg2+to yield photosynthesis was 162: 257-265.
OAA and Pi. primarily due to
reduction of Pi rather
than se in the
partial direct n
of atmospheric C02
via the enhanced
maize PEPCase.
However, no report on
biomass accumulation
or yield as a
consequence of
PEPCase
overexpression was
reported.
ii) Maize e Higher levels of maize Hudspeth,
introduced in to PEPCase transcript of R.L.,Grula,
tobacco plants under the correct size were J.W.,Dai, Z.,
the l maize obtained using tobacco Edwards, G.E. and
PEPCase and tobacco (chlorophyll a/b Ku, M.S.B. 1992.
chlorophyll a/b binding protein gene Plant Physiol. 98:
binding protein gene promoter. With two 4
promoter. fold incerase in
PEPCase activities in
leaf, transgenic plants
had significantly
elevated levels of
titratable acidityand
malic acid. However,
these mical
differences did not
produce any significant
physiological changes
with respect to
photosynthetic rate or
C02 compensation
point.
AspAT i) Panicum eum mAspAT- or cAspAT- Sentoku, N.,
L. mitochondrial and transformed plants Taniguchi , M.,
AspAp cytosolic AspAT had about threefold or Sugiyama, T.,
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catalyzes (mAspAT and cAspAT, 3.5-fold higher AspAT |shimaru, K.,
the reversible respectively) genes activity in , R.,
transfer of the were expressed in the leafthan non- Takaiwa, F. and
amino group of tobacco plants under transformed plants, Toki, S. 2000.
(Asp) to a- CaMV 35$ promoter. respectively. Plant Cell Rep.
ketogluta rate to Leaves of both 19598 - 603.
form OAA and transformed plants
Glu had increased levels of
PEPCase and
transformed plants
with cAspAT also had
increased levels of
mAspAT in the leaf.
These results further
suggested interaction
between C and N
metabolism.
ii) Three AspAT genes Compared with Zhou. Y., Cai ,H.,
from rice (OsAAT3) l Xiao, J.
and one AspAT gene plants, the Li, X., Zhang, Q.
from E. coli (EcAAT) transformants showed and Lian, X. 2009.
were over expressed significantly increased Theor Appl
under CaMV 35$ leaf AspAT activity and Genet. 11821381-
promoter in rice greater seed amino 1390
plants .
acid and protein
contents. However,
influence of CN level
on biomass or yield
was not discussed.
Higher activity of PEPCase shall facilate C02 capturing and makes the carbon backbone
available for routing of nitrogen in to c form through joint activity of AspAT and GS. As
a result, the inventors have found that object of the present ion can be attained by
concomitant increase in expression of genes encoding AspAT, GS and e to establish
the present invention.
Below is given a state of the art knowledge in relation to the present invention and the
attempts previously made to enhance either carbon and / or nitrogen levels in the plant.
Reference may be made to article by Hudspeth, R.L., Grula, J.W., Dai, 2., Edwards, G.E. and
Ku, M.S.B., entitled ”Expression of miaze oenolpyruvate carboxylase in transgenic
tobacocnl992, Plant Physiology 98:
, 4), n PEPCase from maize was
expressed under a tobacco(Nicotiana plumbaginifolia) chlorophyll a/b binding protein gene
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promoter in o plants. Up to two fold higher activity of PEPCase was observed in the
transgenic leaves as compared to non-transformants with elevated levels of titratable
acidity and malic acid. However, these biochemical differences did not produce any
significant physiological s with respect to photosynthetic rate or C02 sation
point.
Reference may be made to article by Lebouteiller, B., Dupont, A.G., Pierre, J.N., Bleton
, J.,
Tchapla, A., rt, M. and Moing, A., Rolin, D., and Vidal, J. entitled ”Physiological
impacts of modulating phosphoenolpyruvate ylase levels in leaves and seeds of
Arabidopsis thaliana” (2007, Plant Science, 172:256-272,), wherein the PEPCase of sorghum
was expressed under CaMV 35$ promoter in Arabidopsis plant. The leaves of the primary
transformants showed up to ten-fold increase in e activity and up to 30% increase in
the dry weight and total protein content of seeds. However, the transformants (primary and
progeny) did not show any improved growth phenotype or modification in seed tion
per plant
Reference may be made to yet another article by Chen, L.M., Li, K.Z. Miwa, T. and Izui, K.
entitled ”Overexpression of a cyanobacterial phosphoenol pyruvate carboxylase with
diminished sensitivity to feedback inhibition in Arabidopsis s amino acid metabolism”
(2004, Planta, 219: 440-419.), wherein the cyanobacterial Synechococcus vulcanus
phosphoenolpyruvate carboxylase Case) with diminished sensitivity to feed back
inhibition, was over expressed under the control of CaMV 35$ promoter in Arabidopsis
plant. One third of the T1 transformants showed severe phenotypes as bleached leaves and
were infertile when grown on soil. However, no such phenotype was observed with
Arabidopsis transformed with maize PEPCase (ZmPEPC) for C4 photosynthesis, which is
normally sensitive to a feedback inhibitor, L-malate. The growth inhibition of SvPEPC
transformed T2 plants was presumed to be primarily due to a decreased availability of
oenolpyruvate (PEP), one of the precursors for the shikimate pathway for the
synthesis of aromatic amino acids and phenylpropanoids.
Referernmay be made to yet another article by Fukayama, H., Hatch, M.D., Tamai, T.,
Tsuchida, H., Sudoh, S., Furbank, RT and Miyao, M., entitled ity regulation and
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physiological impacts of maize C (4)-specific phosphoenolpyruvate carboxylase
overproduced in transgenic rice plants” (2003, Photosynthesis Research, 77: 227-239),
wherein the intact maize PEPCase gene was overexpressed in the leaves of rice plants.
Introduced e in transgenic rice leaves underwent activity regulation through n
phosphorylation in manner similar to endogenous rice PEPCase but contrary to that
occurring in maize , being downregulated in the light and upregulated in the dark.
Compared with untransformed rice, the level of PEP was slightly lower and the product
(OAA) was slightly higher in transgenic rice, suggesting that maize PEPCase was functioning
even though it remained dephosphorylated and less active in the light. 14C02 labeling
experiments indicated that maize PEPCase did not contribute significantly to the
ynthetic C02 n of transgenic rice plants. Rather, it ly lowered the C02
assimilation rate. This effect was ascribable to the stimulation of respiration in the light,
which was more marked at lower 02 concentrations. It was concluded that overproduction
of PEPCase does not directly affect ynthesis significantly but it sses
photosynthesis indirectly by stimulating respiration in the light.
Reference may be made to yet another article by Vincent, R., Fraisier, V., Chaillou, S.,
, M.A., Deleens, E., Phillipson, B., Douat, C., Boutin, J.P. and Hirel, B., entitled
”Overexpression of a soybean gene encoding cytosolic glutamine synthetase in shoots of
transgenic Lotus corniculatus L. plants triggers changes in ammonium assimilation and plant
development” (1997, Planta. 201:424-433), wherein a soyabean cytosolic GS gene 6515 was
fused with CaMV 35$ promoter to achieve constitutive expression in the lotus ulatus
L. plants. On growing the transgenic plants under different N regimes an increase in free
amino acids and ammonium was observed accompanied by a decrease in soluble
carbohydrates in the transgenic plants cultivated with 12 mM NH4+ in comparison to the
wild type grown under the same conditions. Labelling ments revealed that both
ammonium uptake in the roots and the subsequent translocation of amino acids to the
shoots was lower in plants over expressing GS. However the early floral development in the
ormed plants suggested the role of GS in the early senescence and premature
flowering when plants were grown on an ammonium-rich medium. Limitation of C skeleton
and enen for enhanced NH4+assimilation were anticipated.
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Reference may be made to yet another article by Fuentes, S.|., Allen, D.J., Ortiz-Lopez, A. and
Hernandez, G., entitled ”Overexpression of cytosolic glutamine synthetase increases
photosynthesis and growth at low nitrogen conditions” (2001, l of Experimental
Botany, 52:1071-1081), wherein the alfa alfa GS driven by constitutive CaMV 35$ promoter
uced into tobacco plants. Leaf GS activity in the transgenic plants increased up to six
times of untrasformed plants. Under N starvation GS transgenic grew better by maintenance
of photosynthesis at rates indistinguishable from plants under high N, while photosynthesis in
the control plants was inhibited by 40-50 % by N deprivation. However, under optimum N
fertilization conditions, no effect of GS overexpression on photosynthesis or growth was
Reference may be made to yet another article by Oliveira, |.., Brears, T., Knight, T., Clark, A.
and Coruzzi, G., entitled ”Overexpression of cytosolic glutamine synthetase. Relation to
nitrogen, light, and photorespiration” (2002, Plant logy, 129: 1170-1180), wherein the
overexpression of pea cytosolic GS was studied in relation to nitrogen, light and
photorespiration. Tobacco plants, which cally overexpress cytosolic GSl in leaves,
y a light-dependent improved growth phenotype under N-limiting and limiting
ions as evident by increase in fresh weight, dry weight, and leaf soluble protein. The
cytosolic GSl transgenic plants also exhibit an increase in the C02 photorespiratory burst and
an se in levels of photorespiratory intermediates, suggesting changes in
photorespiration. However, the effect of stimulation of photorespiration by GS ression
on plant productivity was not discussed.
Reference may be made to yet another e by Cai, H., Zhou, Y., Xiao, J., Li, X., Zhang, Q.
and Lian, X., entitled ”Overexpressed glutamine synthetase gene modifies nitrogen
metabolism and abiotic stress response in rice” (2009, Plant Cell Reports. 28: 527-537),
wherein the full-length cDNAs encoding rice (Oryza sativa) cytosolic GS genes (OsGSl;1 and
OsGSl;2) along with E. coli GS gene (glnA) were overexpressed in the rice plant under
constitutive CaMV 35$ promoter. An increased metabolic level in GS-overexpressed plants
was obtained which showed higher total GS activities and soluble protein concentrations in
leaves and higher total amino acids and total N t in the whole plant. However,
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decrease in both grain yield production and total amino acids were observed in seeds of GS-
overexpressed plants ed with wild-type plants.
Reference may be made to yet another article by Sentoku, N., Taniguchi, M., Sugiyama, T.,
Ishimaru, K., Ohsugi, R., Takaiwa, F. and Toki, S., entitled ” Analysis of the transgenic tobacco
plants expressing Panicum miliaceum aspartate aminotransferase genes" (2000, Plant Cell
Reports, 19: 3), n the effects of the overexpression of Panicum mitochondrial
and cytoplasmic AspAT T and cAspAT respectively) under the control of CaMV 35$
promoter were ted on transgenic tobacco plants. The mAspAT- or cAspAT-transformed
plants had about threefold or 3.5-fold higher AspAT activity in the leaf than non-transformed
plants, respectively. stingly, the leaves of both transformed plants had increased levels
of PEPCase and transformed plants with cAspAT also had increased levels of mAspAT in the
leaf. These results suggest that the increased expression of Panicum cAspAT in transgenic
tobacco enhances the expression of its endogenous mAspAT and PEPCase, and the increased
expression of Panicum mAspAT enhances the expression of its endogenous PEPCase.
However, there is no account on effect of AspAT overexpression on plant growth and
productivity.
Reference may be made to yet another article by Zhou, Y., Cai, H., Xiao, J., Li, X., Zhang, Q.
and Lian, X., entitled ”Over-expression of aspartate aminotransferase genes in rice resulted
in d nitrogen metabolism and increased amino acid content in seeds” (2009,
Theoretical and d Genetics, 118:1381—1390 ), wherein three AspAT genes from rice
(OsAAT1-3) encoding chloroplastic, cytoplasmic, and mitochondrial AspAT isoenzymes,
respectively and one AspAT gene from E. coli (EcAAT) were pressed in rice plant
under the control of CaMV 35$ promoter. The OsAAT 1, OsAATZ, and EcAATtransformants
showed significantly sed leaf AspAT activity and greater seed amino acid and protein
contents. However no significant changes were found in leaf AspAT activity, seed amino acid
content or protein t in OsAAT3 xpressed plants.
Reference may be made to yet another article by Murooka, Y., Mori, Y. and Hayashi, M.,
entitled ” Variation of the amino acid content of Arabidopsis seeds by expressing soyabean
aspartate aminotransferase gene” (2009, Journal of Bioscience and Bioengineering, 94: 225-
230), Wain AspAT5 encoding the chloroplast AspAT from Soyabean was linked to CaMV
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355 er for achieving its overexpression in the Arabidopsis plant. Expression of
AspAT5 in transformants caused 3-, 4-, 23-, and 50-fold increases in the contents of free
glycine, alanine, asparagine, and Glu, respectively, in the T3 seeds. However, a decrease in
the contents of valine, tyrosine, cine, e, and phenylalanine by several folds was
also observed. Further, there is no report on effect of overexpression of AspAt on plant
growth and productivity.
Reference may be made to yet another article by Yanagisawa, S., Akiyama, A., Kawaka, H.,
Uchimiya, H. and Miwa, T. ed ”Metabolic engineering with Dofl transcription factor in
plants: Improved nitrogen assimilation and growth under low-nitrogen conditions" (2004,
Proceedings of the National Academy of Sceinces (USA), 101:7833-7838), wherein over-
expression of Dofl transcription factor from maize improves N lation in transgenic
Arabidopsis plants. Dofl expressing plants showed up-regulation of genes encoding
enzymes for C skeleton tion, a marked increase of amino acid contents, and a
reduction of the glucose level. The s t ative modification of C and N
metabolisms on the basis of their intimate link. Elementary analysis revealed that the N
content increased in the Dofl transgenic plants (230%), ting promotion of net N
assimilation. r, effect of C N alteration on plant biomass or yield was not discussed.
Reference may be made to still another article by Takahashi, H., Takahara, K., Hashida, S.,
Hirabayashi, T., Fujimori, T., Kawai-Yamada, M., Yamaya, T., sawa, S. and Hirofumi
Uchimiya, H., entitled ”Pleiotropic Modulation of carbon and nitrogen metabolism in
Arabidopsis plants overexpressing the NAD kinase2 gene” by (2009, Plant Physiology.
151:100-113), wherein transgenic Arabidopsis plants with over expression of NAD kinase2
(NADK2) along with NADK2 mutants were raised to investigate the impacts of altering NADP
level on plant metabolism. Metabolite profiling revealed that NADP (H) concentrations were
proportional to NADK activity in NADK2 overexpressors and in the NADK2 mutant. Several
metabolites associated with the calvin cycle were also higher in the overexpressors,
anied by an increase in overall Rubisco activity. Furthermore, enhanced NADP (H)
production due to NADK2 overexpression increased N assimilation. Gin and Glu
nons, as well as some other amino acids, were higher in the overexpressors.
However, there is no clear evidence on role of NADK2 influencing C and N metabolism.
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The improvement in the C and N status of plants is a major n to improve productivity.
However, there is no report yet which show enhancement of C and N levels and uent
improvement in the biomass and yield of plant.
Further, no attempt has been made to co-over express three genes, viz. AspAT, GS and
PEPCase, leading to enhanced status of C and N, biomass, and yield.
IVES OF THE INVENTION
The main objective of the present invention is to provide an expression construct for
enhancing the carbon, nitrogen, biomass and yield of plants which obviates the drawbacks
ofthe hitherto known prior art as detailed above.
Another objective of the present invention is to provide an expression construct for co-
pression of AspAT (SEQ ID NO: 1), GS (SEQ ID NO: 2). and PEPcase (SEQ ID NO: 3)
wherein PEPCase efficiently captures C02 whereas the other two genes encoding for
enzymes (AspAT and GS) have role in N assimilation, using the carbon backbone provided by
PEPCase mediated reaction resulting in the ement of C and N status with improved
biomass and yield of .
Yet another objective of the present invention is to raise transgenic plant exhibiting co-
overexpression of genes AspAT, GS and e.
Still r objective of the present invention is to evaluate the expression of AspAT, GS
and PEPCase genes in transgenic .
Still another objective of the present invention is to evaluate the transgenic plants for status
of C and N, biomass and yield compared to wild plants.
SUMMARY OF THE INVENTION
Accordingly, the present invention provides an expression uct represented by SEQ ID
NO. 7 for co-expression of the genes AspAT, GS and e comprising nucleotide
ces represented by SEQ ID NO: 1, SEQ ID NO: 2 and SEQ ID NO: 3, wherein SEQ ID
NO: 1 represents AspAT genes, SEQ ID NO: 2 represents GS genes and SEQ ID NO: 3
represents PEPCase genes linked to t one control sequence and a transcription
terminator sequence, useful for enhancing the carbon, nitrogen, biomass and yield of plants
as comde to wild type or untransformed plant.
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In an embodiment of the present invention, the control sequence is preferably represented
by SEQ ID NO: 4.
In another embodiment of the present invention, the transcription terminator ce is
represented by SEQ ID NO: 5.
In an ment, the present invention provides an expression construct prepared from
the cytoso|ic AspATgene from soyabean, cytoso|ic GS gene from tobacoo and |ic
PEPCase gene from maize.
In another embodiment of the present invention, the po|ynuc|eotide having SEQ ID No: 7 is
overexpressed in plants.
In still another embodiment of the present invention, the control sequence used is a
constitutive promoter selected from the group consisting of CaMV 35$ promoter, rubisco
promoter, ubiquitin promoter, actin promoter.
In still another embodiment of the present invention, the terminator used is preferably
selected from the group consisting of Nos ator and CaMV 3’ UTR.
In still another embodiment of the present invention, a process for ing the expression
construct wherein the process comprising the steps of:
i) amplifying cDNA ces ng genes represented by SEQ ID NO: 1 using
primers represented by SEQ ID NO: 10 and SEQ ID NO: 11, SEQ ID NO: 2 using
primers represented by SEQ ID NO: 8 and SEQ ID NO: 9 and SEQ ID NO: 3 using
primers represented by SEQ ID NO: 12 and SEQ ID NO: 13;
ii) cloning independently the amplified product of SEQ ID NO: 1, 2 and 3 as
obtained in
step (i) into pGEM-T easy ;
iii) digesting independently the plasmid from the positive clones as obtained in step
(ii) along with pCAMBIA 1302 and further ligating the digested gene
products and pCAMBIA 1302 and transforming into E.coli DH5 0L cells;
iv) sequencing the plasmid from the positive colonies obtained in step (iii)
ming the inframe cloning of AspAT::pCAMBIA1302; GS::pCAMBIA1302
and PEPCase::pCAMBIA 1302.
v) amplifying the products obtained in step (iv) by using primers represented by
D SEQ ID NO: 10 and SEQ ID NO: 16; SEQ ID NO: 14 and SEQ ID NO: 15 and SEQ
ID NO: 17 and SEQ ID NO: 18.
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vi) cloning, digesting, ligating and sequencing was again performed independently
for the amplified GS coding sequence to form GS+pCAMB|A1302 which was
further digested and ligated with the ds of positive clones of amplified
AspATcoding sequence to form A5pAT+GS+pCAMB|A1302 expression te;
vii) ligating the ed plasmids of positive clones of amplified PEPCase coding
sequence with the destination pCAMB|A1302 which was previously cloned with
the AspAT+GS+ expression cassette as obtained in step (vi) such that the genes
AspA, GS and PEPCase were controlled by independent CaMV 35$ promoter
and Nos transcriptional terminator to form single plant expression construct
AspAT + GS + PEPCase represented by SEQ ID NO: 7.
In still another embodiment of the present invention, a process for enhancing the carbon,
nitrogen, biomass and yield of plants using the expression construct, wherein the said
process comprising the steps of:
a) transforming Agrobacterium tumefacians strain with the expression construct
as claimed in claim 1;
b) transforming the explants with the recombinant Agrobacterium tumefacians
strain as obtained in step (a);
c) selecting the ormed explants of step (b) to obtain the desired
transformed plants having enhanced level of , nitrogen, biomass and
yield of plants as compared to wild type plant.
In still another embodiment of the t invention, a process wherein the
ormed plants display an increase of about 45-50% in PEPCase activity, atleast 55%
in GS ty and 55-60% in AspAT activity as compared to wild type, resulting in
increase in carbon and nitrogen levels in the plant.
In another embodiment of the present invention, the Agrobacterium strain provided is
ed from a group consisting of GV3101 with ATCC number cterium tumefaciens
(GV3101 (pMP90RK) (C58 derivative) ATCC® Number: 33970 Reference: Hayashi H, Czaja |,
Lubenow H, Schell J ,Walden R. 1992.
In yet another embodiment of the t invention, the transformed plants are selected
from the group consisting of grain crops, pulses, vegetable crops, oilseed crop and
ornamens.
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In yet another embodiment, the transformed plants are ed from the group consisting
of arabidopsis, tomato, potato, tobacco, maize, wheat, rice, cotton, mustard, pigeon pea,
cowpea, pea, sugarcane, soyabean and sorghum.
In still another embodiment, the transformed plants as compared to wild type display
increased yield and/or biomass, indicated by increased seed yield and/or pod yield.
In still another embodiment, the transformed plants display enhanced growth
characteristics characterized by increased shoot fresh weight, shoot dry weight, root fresh
and dry weight as compared to wild type or untransformed plant.
In yet another embodiment of the present invention, the transformed plant shows
enhanced levels of , nitrogen, biomass and yield as compared to wild plants.
In still r embodiment of the present invention, the expression and functionality of
over sed enzymes in transgenic plants is evaluated.
In yet another embodiment of the present invention, the selectable marker used is hpt gene
mycin phosphotransferase) represented by SEQ ID NO: 6 for hygromycin resistance
controlled by duplicated CaMV 35$ promoter and terminated by CaMV 3'UTR (polyA signal).
In another embodiment of the present invention, biochemical assays and RT-PCR were
performed to evaluate the expression of introduced genes and the functionality of over
expressed enzymes in transgenic plants.
In a further ment of the present ion, the transgenic plants were igated
for ent growth and yield parameters and compared to wild plants cultivated under the
same conditions.
BRIEF DESCRIPTION OF THE ACCOMPANYING DRAWINGS
Figure 1 represents a schematic view of T- DNA region of plant transformation vector
A1302 for co-overexpression of AspAT, GS and PEPCase (a) and amplification of
coding sequences for AspAT, GS and PEPCase from respective plant s (b) as discussed
in es 1 to 4.
Figure 2 represents DNA analysis (a) and RNA analysis (b) of WT, LI and L2, where WT = wild,'
L1 and L2 = two different transgenic lines co-overexpressing AspAT, GS and PEPCase.
Figure Dapresents shoot fresh weight (FW) (a), shoot dry weight (DW) (b), root fresh
weight (c) and root dry weight (d) of WT and AspAT+GS+PEPCase transgenic plants at 60
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days of sowing. Data is mean of five separate biological replicates with standard ion
marked on each bar.
Figure 4 represents AspAT ty (a) GS activity (b) and PEPCase activity (d) of WT, LI and
L2 at 42 days of sowing. Data is mean of three te biological replicates with standard
deviation marked on each bar.
Figure 5 represents Analyses of N (a) and C (b) content from different plant parts of WT, LI
and L2 lines at 65 days of sowing. Data is mean of three separate biological replicates with
standard deviation marked on each bar.
Figure 6 represents a entative WT and AspAT+GS+PEPCase transgenic plants at 75
days of sowing.
Figure 7 ents pod number (a) and seed yield (b) in WT, LI and L2 at 75 days of .
Data is mean of five te biological replicated with standard deviation marked on each
bar.
DETAILED DESCRIPTION OF THE INVENTION
The present ion relates to genetic engineering of C and N metabolism in plants. In
particular, the present invention relates to an expression construct for co-overexpression of
AspAT, GS and e for concomitant alteration in the enzymes involved in C and N
assimilation or utilization and/or their expression in order to engineer plants with increased
C and N levels thereby promoting better growth and biomass production and enhanced
yield.
The term "vector" refers to a construct made up of nucleic acids wherein gene from a
foreign source can be ligated and isolated when needed. The construct is usually a plasmid
(i.e. extra chromosomal self replicating nucleic acid) and is propagated, for example
bacterial cell of Eco/i. The vector in the present invention was used to transfer the gene
from one source to another.
The term "gene" refers to the sequence of nucleic acids that can produce a ptide
chain.
The term "gene expression" refers to the amount of RNA (i.e. sequence of ribonucleic
acid) of choice transcribed (i.e. the process of synthesis of RNA by DNA) by DNA (i.e.
sequean deoxyribonucleic acid). When the gene was transcribed in higher amounts as
compared to the l, it was referred to as "over-expression” of gene.
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The term ”selectable marker” refers to a gene, which allows a cell to survive in the ce
of an ise toxic otic
The term "transgenic plant" refers to genetically transformed plants with stable ation
of introduced gene in to its genome The term ”promoter” refers to the specific DNA
sequence, usually located upstream (5') to the DNA sequence involved in transcription,
wherein the enzyme RNA polymerase binds for the process of transcription. “Constitutive
promoters” direct expression of the gene in all tissues and during all periods regardless of
the nding environment and pment stage of the organism.
The term ’expression cassettes” refers to vector comprising of (a) a constitutive promoter;
(b) all the three genes cloned 3' to the tutive promoter, (c) a polyadenylation signal
located 3' to the coding sequence.
and capable of passing genetic information on to successive tions.
’Wild-type" plants are untransformed plants.
The term "To" refers to the first set of genetically ormed plants that can be identified
and selected upon growth in presence ofa selection agent antibiotic, for which the
transgenic plant contains the corresponding resistance gene. The term "T1" refers to the
generation of plants obtained after self-fertilization of the flowers of T 0 generation plants,
previously selected as being transgenic. "T2” plants are generated from T1 plants, and so on.
The t invention will be illustrated in greater details by the following examples.
EXAMPLES
The following examples are given by way of illustration of the present invention and therefore
should not be construed to limit the scope of the present invention.
Sequences of the primers used in the present invention are listed as follows:
Name of the Sequence
Sequence e
sequence ID No.
AspAT cDNA atggcttctc acgacagcat ttct ccaacctccg cttctgattc cgtcttcaat 60 Represents 1
cacctcgttc gtgctcccga agatcctatc ctcggggtaa ctgtcgctta taacaaagat 120
sequence nucleotide
ccaagtccag ttaagctcaa cttgggagtt ggtgcttacc gaactgagga aggaaaacct 180
cttgttttga atgtagtgag gcgagttgaa cagcaactca taaatgacgt gtcacgcaac 240 sequences of
aaggaatata ttccgatcgt tgggcttgct gattttaata aattgagtgc taagcttatt 300
AspAT genes for
tttggggctg acagccctgc tattcaagac aacagggtta ccactgttca atgcttgtct 360
ggaactggtt ctttaagagt tgggggtgaa tttttggcta atca ccaacggact 420 making an
atatacttgc caac ttggggcaat aagg ttttcaactt agcaggcttg 480
expression
tctgtcaaaa cataccgcta ctatgctcca gcaacacgag gacttgactt tcaaggactt 540
ctggaagacc ttggttctgc tccatctgga tctattgttt tgctacatgc atgcgcacat 600
aaccccactg gtgtggatcc aacccttgag gagc agattaggca gctaataaga 660
tcaaaagctt tgttaccttt ctttgacagt gcttatcagg gttttgctag tggaagtcta 720
gatgcagatg cccaacctgt tcgtttgttt gttgctgatg gaggcgaatt gctggtagca 780
caaagctatg caaagaatct gggtctttat ggggaacgtg ttggcgcctt aagcattgtc 840
tgcaagtcag ctgatgttgc aagcagggtt gagagccagc tgaagctagt gattaggccc 900
atgtactcaa gtcctcccat tcatggtgca tccattgtgg ctgccattct caaggaccgg 960
aatttgttca atgactggac tattgagttg aaggcaatgg ctgatcgcat catcagtatg 1020
cgccaagaac ttttcgatgc tttatgttcc agaggcacac ctggcgattg gagtcacatt 1080
caga ttggaatgtt tactttcact ggattgaatg cggaacaagt ttccttcatg 1140
actaaagagt tccatatata catgacatct gatgggagga ttagcatggc tggtctgagt 1200
tccaaaactg tcccacttct ggcggatgcg atacatgcag ctgtaacccg agttgtctaa 1260
GS cDNA atggctcatc tttcagatct cgttaatctc tctg actccactca gaaaattatt 60 Represents 2
gctgaataca tatggattgg tggatcagga atggacgtca ggagcaaagc actt 120
sequence nucleotide
tctggacctg ttgatgatcc ttcaaagctt cccaaatgga attatgatgg ttctagcaca 180
ggacaagctc ctggagaaga cagtgaagag atcctatatc ctcaagcaat tttcaaggat 240 sequences of GS
ccattcagaa ggggcaacaa tatcttggtc gatt gttacacccc agctggtgaa 300
genes for making
cccattccaa caaacaaaag gcacagtgct gccaagattt tcagccaccc tgatgttgtt 360
gttgaggaac cctggtatgg tcttgagcaa acct tgttgcaaaa agatatcaat 420 an expression
tggcctcttg gatggcctct tggtggtttt ccac agggaccata cgga 480
construct
attggagctg gaaaggtctt tggacgcgat atcgttgact ctcattataa ggcatgtctc 540
ggga ttaacatcag tggtatcaat gtga tgcccggaca gtgggaattt 600
caagttggac cttcagttgg catttcagca gctgatgaat tgtgggcagc tcgttacatt 660
agga ttactgagat tgctggagtt tcat ttgaccccaa acctattccg 720
tgga atggtgctgg agctcacaca aactacagca caaagtctat gaggaatgaa 780
ggaggctatg aagtcattaa aatt gagaaccttg ggca caaggagcat 840
attgcagcat atggtgaagg caacgagcgt cgtctcactg gaagacacga aacagctgac 900
atcaacacat tcaaatgggg agttgcgaac cgtggtgcat ctattcgtgt gggaagagac 960
acggagagag aagggaaggg atacttcgag gataggaggc ctgcttcgaa tatggatcca 1020
ttcgtcgtga cttccatgat tgctgagacc actatcctat ccgagccttg a 1071
PEPCase atggcgtcga ccaaggctcc cggc gagaagcacc tcga cgcgcagctc 60 Represents 3
cgtcagctgg tcccaggcaa ggtctccgag gacgacaagc tcatcgagta cgatgcgctg 120
cDNA nucleotide
ctcgtcgacc tcaa catcctccag gacctccacg ggcccagcct tcgcgaattt 180
sequence gtccaggagt gctacgaggt ctcagccgac tacgagggca aaggagacac gacgaagctg 240 sequences of
ggcgagctcg gcgccaagct cacggggctg gcccccgccg tcct cgtggcgagc 300
PEPCase genes for
tccatcctgc acatgctcaa caac ctggccgagg aggtgcagat cgcgcaccgc 360
cgccgcaaca gcaagctcaa gaaaggtggg gacg agggctccgc caccaccgag 420 making an
tccgacatcg aggagacgct caagcgcctc gtgtccgagg tcggcaagtc ccccgaggag 480
expression
gtgttcgagg cgctcaagaa cgtc gacctcgtct cgca tcctacgcag 540
tccgcccgcc gctcgctcct gcaaaaaaat gccaggatcc gtct gacccagctg 600 construct
aatgccaagg acatcactga cgacgacaag caggagctcg atgaggctct gcagagagag 660
atccaagcag ccttcagaac cgatgaaatc aggagggcac aacccacccc gcaggccgaa 720
atgcgctatg gcta catccatgag actgtatgga agggtgtgcc taagttcttg 780
cgccgtgtgg atacagccct tatc ggcatcaatg agcgccttcc ctacaatgtt 840
tctctcattc ggttctcttc gggt ggtgaccgcg atcc aagagttacc 900
gtga caagagatgt atgcttgctg gccagaatga tggctgcaaa cttgtacatc 960
gatcagattg aagagctgat gtttgagctc tctatgtggc gctgcaacga tgagcttcgt 1020
gttcgtgccg aagagctcca cagttcgtct ggttccaaag ttaccaagta ttacatagaa 1080
ttctggaagc ctcc aaacgagccc taccgggtga tactaggcca tgtaagggac 1140
aagctgtaca acacacgcga gcgtgctcgc ctgg cttctggagt ttctgaaatt 1200
tcagcggaat cgtcatttac cagtatcgaa gagttccttg agccacttga gctgtgctac 1260
aaatcactgt gtgactgcgg cgacaaggcc atcgcggacg ggagcctcct ggacctcctg 1320
gtgt tcacgttcgg gctctccctg gtgaagctgg acatccggca ggagtcggag 1380
cggcacaccg acgtgatcga cgccatcacc ctcg gcatcgggtc gtaccgcgag 1440
tggcccgagg acaagaggca ggagtggctg ctgtcggagc tgcgaggcaa gcgcccgctg 1500
ctgcccccgg accttcccca gaccgacgag atcgccgacg tcatcggcgc cgtc 1560
gagc ccga cagcttcggc ccctacatca tctccatggc gacggccccc 1620
tcggacgtgc tcgccgtgga gctcctgcag cgcgagtgcg gcgtgcgcca gccgctgccc 1680
gtggtgccgc tgttcgagag gctggccgac ctgcagtcgg cgcccgcgtc cgtggagcgc 1740
ctcttctcgg ggta catggaccgg atcaagggca agcagcaggt cggc 1800
tactccgact ccggcaagga cgccggccgc ctgtccgcgg cgtggcagct gtacagggcg 1860
caggaggaga aggt ggccaagcgc gtca cctt gttccacggc 1920
cgcggaggca ccgtgggcag gggtggcggg cccacgcacc ttgccatcct gtcccagccg 1980
ccggacacca tcaacgggtc catccgtgtg acggtgcagg gcgaggtcat cgagttctgc 2040
ttcggggagg agcacctgtg cttccagact ctgcagcgct tcacggccgc cacgctggag 2100
cacggcatgc acccgccggt caag cccgagtggc tcat ggacgagatg 2160
gcggtcgtgg ccacggagga gtaccgctcc gtca aggaggcgcg cttcgtcgag 2220
tacttcagat cggctacacc cgag tacgggagga tgaacatcgg cagccggcca 2280
gccaagagga ggcccggcgg cggcatcacg accctgcgcg ccatcccctg gatcttctcg 2340
tggacccaga ccaggttcca cctccccgtg ggag tcggcgccgc attcaagttc 2400
gccatcgaca aggacgtcag gaacttccag gtcctcaaag agatgtacaa cgagtggcca 2460
ttcttcaggg tcaccctgga cctgctggag atggttttcg ccaagggaga ccccggcatt 2520
gccggcttgt atgacgagct gcttgtggcg gaagaactca agccctttgg gaagcagctc 2580
agggacaaat acgtggagac acagcagctt caga tcgctgggca caaggatatt 2640
ggcg atccattcct gaagcagggg ctggtgctgc gcaaccccta catcaccacc 2700
ctgaacgtgt tccaggccta cacgctgaag cggataaggg accccaactt caaggtgacg 2760
ccccagccgc ccaa ggagttcgcc gacgagaaca agcccgccgg actggtcaag 2820
ctgaacccgg cgagcgagta cccgcccggc ctggaagaca cgctcatcct caccatgaag 2880
ggcatcgccg ccggcatgca gaacactggc tag 2913
CaMV 35S catggagtca aagattcaaa tagaggacct aacagaactc gccgtaaaga ctggcgaaca 60 Represents control 4
gttcatacag agtctcttac gactcaatga caagaagaaa atcttcgtca acatggtgga 120
er sequence
gcacgacaca cttgtctact ccaaaaatat caaagataca gtctcagaag accaaagggc 180
ce aattgagact caaa gggtaatatc cggaaacctc ctcggattcc attgcccagc 240
tatctgtcac tttattgtga agatagtgga aaaggaaggt ggctcctaca aatgccatca 300
ttgcgataaa ggaaaggcca tcgttgaaga tgcc gacagtggtc ccaaagatgg 360
acccccaccc agca tcgtggaaaa agaagacgtt ccaaccacgt cttcaaagca 420
agtggattga tgtgatatct ccactgacgt aagggatgac tccc actatccttc 480
gcaagaccct tcctctatat aaggaagttc atttcatttg gagagaacac gggggact 538
nos cgttcaaaca tttggcaata aagtttctta agattgaatc ctgttgccgg tcttgcgatg 60 Represents 5
attatcatat aatttctgtt gaattacgtt aagcatgtaa taattaacat gtaatgcatg 120
(nopaline transcription
acgttattta tgagatgggt ttttatgatt agagtcccgc aattatacat ttaatacgcg 180
synthase) atagaaaaca aaatatagcg cgcaaactag gataaattat cgcgcgcggt gtcatctatg 240 terminator
3'UTR TTACTAGATCGGG sequence
(polyAsignal)
sequence
hygromycin ctatttcttt gccctcggac gagtgctggg gcgtcggttt tcgg cgagtacttc 60 Represents hpt 6
phosphotransfe tacacagcca tcggtccaga cggccgcgct tctgcgggcg atttgtgtac gcccgacagt 120
gene (hygromycin
rase cccggctccg acga ttgcgtcgca tcgaccctgc gcccaagctg cgaa 180
attgccgtca ctct gttg gtcaagacca atgcggagca tatacgcccg 240 phosphotransferas
gagtcgtggc gatcctgcaa gctccggatg cctccgctcg aagtagcgcg tctgctgctc 300
e)for hygromycin
catacaagcc aaccacggcc tccagaagaa gatgttggcg acctcgtatt gggaatcccc 360
gaacatcgcc tcgctccagt caatgaccgc tgttatgcgg tccg tcaggacatt 420 resistance
gttggagccg aaatccgcgt gcacgaggtg ccggacttcg gggcagtcct cggcccaaag 480
ctca tcgagagcct gcgcgacgga cgcactgacg gtgtcgtcca tcacagtttg 540
atac acatggggat cagcaatcgc gcatatgaaa tcacgccatg tagtgtattg 600
accgattcct tgcggtccga atgggccgaa cccgctcgtc tggctaagat cggccgcagc 660
gatcgcatcc atagcctccg cgaccggttg agcg ggcagttcgg tttcaggcag 720
gtcttgcaac gtgacaccct gtgcacggcg ggagatgcaa taggtcaggc tctcgctaaa 780
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ctccccaatg lcaagcacxt ccggaatcgg gagcgcgcc gatgcaaagt gccgataaac 840
ataacgatct ttgtagaaac ca tcggcgca gctamacc acat atcca cgccc 900
tcctacatcg aagctgaaag cacgagattc ttcgccctcc gagagctgca lcaggtcgga 960
gacgcmtcp, aacttttcga tcagaaactt ctcnacaaac gtcgcggtga gttcaggctt 1020
meat 1026
expression Represents an
cassettes for expression construct
Asp/\T, GS (or ression of
and PEPCasc the genes Asp/W; 65
.C HC';::5 »
coding - a atctccacbac.-.._ := L z andPEPCasr.’
Wmecamr-mg Spel
sequcrl ccs.
CIOHEd gcttctcacnacagcatdccncttctccaacctccncttcmattccgtcttcaatcacctcgttcntg
ctcccga tatcctcngggt aactgtcgcttataacaaagatccaagtccagttaagctcaacttpgg
u n dcr
agttgglgcttaccga actgaggaaggaaaacctcttnttttgaatmagtgangcgngttnaacagcaact
C0" "0| 0“ ca taaa tgacg tgtca cgcaacaaggaatatattccgatcgttgggctmctga tttlaataaattgamflct
atttttggggctga tgctattca agacaacagggrraccactgttcaatgcttgtctgga ac
Camv 3 SS
tggttctttaagagttgggggtgaamttggctaaacactatcaccaacggactatatacflgccaa caccaa
promoter ctlggngcaatcacccgaamttttcaacttagcapgcttgtctgtca aaacataccgctactatgctccagc
( ) a n d N as aacacgaggacttgactttcaaggacttctggaaga ccttggttctgctcca tctgga gttttgctaca
‘ tgcatgcgcacataaccccactrgmmgatccaacccnnagcaarmnagcagattaggcagcta ata an
terminator atcaaa agcmgttacctttctttgaca mgcttatca tgctagtggaagtctagamcagatficcca
a cctgttcgtttgtttgttgctgatggaggcgaattgctggtagcacaaagcta mcaaa gaatctngntct tt
(a) in
atggggaacgtgttggcgccttaagcattgtctgcaagtcagctgatgttgcaagcagggttgagagccanc
PCAM BIA mgtgattaggccca tgtactcaagtcctcccattcatggtgcatcca ttgtggctgccattctca ag
1302 aamgttcaatnactggactattgagttgaaggcaatggctgatcgcatcatcagtatgcgccaag
aacttttcgamcntatgtxccagamcacacctmcnatmgagtcacattatcaaacagattggaatgttt
actltcactggattgaatgcfigaacaagtttcc‘ttcatgactaaagagttccatatatacatgacatctgatgg
gaggattagcatggctggrctgagttccaaaactgtcccacttctggcngamcgatacatgcanctgtaa'or:
gagttgtdaagg?
Mtgaat:ggtgaccagctcgaamccccgatggguaaaca-mggcaataaagsnmaazanggarc
gagggggtgggxafitggtfitcgtaxaazmmgmacgggaggajgtaataattaacaszag
meal‘zacagtatttaxaawmmpjj.smzaficmsgmmmmzmsm
a__caaaa_§a!a c caaacta fiafifiggggggggggmcatctajfi
.tactagalcgggaatta3%atngcgéatgctagagcagcttgagcttggatcagattgtcgtttccc
nccncagtttagcttWWW
Wm:mctcatctttca
GS coding sequence —"
gatncgnaarctca atctctctgactccactcagaaaattattgctga atacatatgganggmgarcapg
aatggacgtcaggagcaaagccagaacacmctngaccmttgatgatccttcaaagcltcccaaatggaa
Ktatgatggttctagcacaggawagctcctggagaagacagtga agagatcctatatcctcaagcaaltnc
aangatccancagaaggggcaacaatatcttggtcatttgtgattgttacaccccagctggtgaacccattc
caaca a acaaaa ggcacagtgctgcca agattttcagccaccctga tgttgttgttgaggaaccctggtatg
mmgagcaanaatacaccltmtgcaaaaagatatcaattggcctcttggatggcctcttggtggttttcct
ggaccacaggga cca ta ciattgcgnaattgga gctggaaaggtcmggacgcgatatcgttgactctcatt
ataaggcatgtctctatgctgggattaacatcagtggtatcaatggagaaglgatgcccggacagtgggaat
ttcaagttgga ccttcagttggcatttcagcagctgatgaa ttgtggncagctcgttacattcttgagagga tt
actgagattgctpgagttgtggtctcantgaccccaaacctattccgggtgactgnaatggtgctgga gctc
acacaaactacagcacaaagtctarga gga atgaaggaggctatgaagtcattaaga aggcaangagaa
ccttggactgaggca caagga gcatattgcagcatatggtgaaggcaacgagentcgtctcactgga agac /‘
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by m
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
' ‘h'l
gacacggagagagaagggaaggga tacttcgagaztaggaggcctgcttcgaatatggatccattcgtcgt
gacttccatgattgctgagaccactatcctatccgagccttg- : - as
Ianaxcatat aa ca aa‘aanaaca aa cat ac tamasg
agataggggggggggaggccggcaattatacamaataggggatagaaaacaagataxa.
aggggcaaacta catct acta an: aattaaactatcagt
gmgacaggatatattggcfiigcgcgcaaatggcgaa tgctagagcagqtrgagcttggatcagattgtcg
-..| ;-.-;v!.‘;-_ aLQ.‘1".','..'-, ".. El--'.:-
. a z : - - - ‘
_ . . . -. mmcttgacca
PEPCan: cod 3 sequznce ——>
tgg-tatggcgtcgaccaaggctcccggccccggcgagaagcaccactccatqgaqzcgcagctc
ctggtcccaggcaaggtctccgaggacgacaagctca(cgagtacgatgcgctgctcgtcgaccgc
ttcctcaacatcctccaggacctccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcag ‘
ccgacta cgagggcaa aggagacacgacgaagctgggcgagctcggcgccaagctcacggggctggcccc
cgccgacgccatcctcgtggcgagctccazcctgcacalgctcaacczcgccaacctggccgaggaggtgca
ga a ccgccgccgcaacagca agctcaagaaaggtgggttcgccgacgagggctccgcca ccacc
gagtccg‘acatcgaggagacgctcaagcgcctcgtgtccgaggtcggcaagtcccccgaggaggtgttcga
ggcgctcaagaaccagaccgtcgacctcgtcttcaccgcgcatcctacgcagtccgcccgccgctcgctcctg
aatgccaggatccgaaattgtctgacccagctgaatgccaaggacatcactgacgacgacaagc
aggagctcgatgaggctctgcagagagagatccaagcagccttcagaaccgatgaaatcaggagggcac
ccccgca ggccgaaatgcgctatgggatgagctacatccatgagactgtatggaagggtg‘gcct
an gttcttgcgccgtgtggatacagccctgaagaatatcggcatcaatgagcgccttccctacaatgtttctct
gttctcttcttggatgggtggtgaccgcgaxggaaatccaagagtta ccccggaggtgacaagaga
tgtatgcttgctggccagaatgatggctgca tacatcgatcagangaagagctgatgtttgagent
ctatgtggcgctgcaacga(gagcltcgtgttcgtgccgaagagdccacagttcgtctggttccaaagttacc
aagtattacatagaattckggaagcaaattcctccaaacgagccctaccgggtgatactaggocacgtaagg
ctgtacaacacacgcgagcgtgctcgccatctgctggcttctggagtttctgaaamcagcggaat
cgtcamaccagtatcga agagnccttgagccacttgagctgtgctacaaa tcactgtgtgactgcggcga
ca aggccatcgcggacgggagcctcctggacctcctgcgccaggtgttcacgttcgggctctccctggtgaa
catccggcaggagtcggagcggcacaccgacgtgatcgacgccatcaccacgcacctcggcatcg
ggtcgtaccgcgagtggcccgaggacaagaggcaggagtggctgctgtcggagctgcgaggcaagcgccc
gctgctgcccccggaccttccccagaccgacgagatcgccgacgtcatcggcgcgttccacgtéctcgcgga
gctcccgcccgacagcttcggcccctacatcatctccatggcgacggccccctcggacgtgctcgccgtggag
ctcctg cagcgcgagtgcggcgtgcgccagccgctgcccgtggtgccgctgttcgagasgctggccgacctg
cagtcggcgcccgcgtccgtggagcgcctmctcggtggactggtacatggaccggatcaagggca agcag
caggtcatggtcggctactccgactccggcaaggacgccggccgcctgtcc
gcggcgtggcagctgtacagggcgca ggaggagatggcgcaggtggccaagcgctacggcgtcaagctca
ccttgttccacggccgcggaggcaccgtgggcaggggtggcgggcccacgcaccttgccatcctgtcccagc
cgccgga cacca tcaacgggtccatccgtgtgacggtgcagggcgaggtcatcgagttctgcncggggagg
agcacctgtgcttccagactctgcagcgcncacggccgccacgctggagcacggcatgcacccgccggtct
ctcccaagcccgagtggcgcaagctcatggacgagalggcggtcgtggccacggaggagtaccgctccmc
gtcgtcaaggaggcgcgcttcgtcgagtacttcagatcggctacaccggagaccgagtacgggaggatgaa
catcggcagccggccagccaagaggaggcccggcggcggcatcacgaccctgcgcgccatcccctggatct
‘ctcgtggacccagaccaggttccacctccccgtgtggctgggagtcggcgccgcancaagncgccatcga
ca agga cgtcaggaacttccaggtcctcaa agagatgtacaacgagtggccattcttcagggtcaccctgga
cctgctggagatggttttcgccaagggagaccccggcattgccggcttgtatgacgagctgcttgtggcggaa
gaaacaagcocmgggaagcagctcagggacaaa‘acgtggagacacagcagcttctcctccagatcgct
gggcacaaggatattcttgaaggcgatccattcctgaagcaggggctggtgctgcgcaacccctacatcacc
accctgaacgtgttccaggcctacacgctgaagcggata cccaacttca aggtgacgccccagcc
gccgctgtccaaggagttcgccgacgagaacaagcccgccggactggtcaagctgaacccgg
cgagcgagtacccgcccggcctggaagacacgctcatcctcaccatgaagggcatcgccgccggcatgca g
abut! Pmn
aacactggctam gaattggtgaccagctcgaatttccccgatgmcmcmigg
m:_a_aa.mt__s_maaagpaxcmmmmmmm
ca wannaaca aa ca. a ante, mm a w
anatamnaatacc - -.-_aaaa_caaaa.t,axac 1:.:-. 1: 1- :_:~: 2: :
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by m
[Annotation] amandam
Unmarked set by amandam
ation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by m
[Annotation] amandam
ed set by amandam
momma:
d primer for
amplification of ‘
tobacco GS coding
65”,». F S'- TGCCATGGCTCA‘i‘CTITCGGATCTCG'iT -3' B
sequence, including
restriction site for
enzyme Ncol.
Reverse primer
for amplification of
S'- GGGTGACCTCAAGGCTCGGATAGGATAGTG ~3' o GS coding
sequence, including
restriction site for
enzyme BstEli.
Forward primer for
amplification of
S’- CATAGATCTTATGGCTTCTCACGACAGCATCT -3’ Soyabean Asp/fl”
coding sequence,
including restriction
site for enzyme Bglil.
Reverse primer for
amplification of
Soyabean MpA'i‘
As pAT pm]. R 5‘-GCCACGTGTTAGACAACTCGGGTTACAGCTG-B' 11
coding sequence,
including restriction
site for enzyme PmIi.
Forward primer for
amplification of
PEPCase 5'- ATAGATCTTATGGCGTCGACCAAGGCTCCG -3‘ maize PEPGase
.59“. F coding sequence,
including restriction
site for enzyme Bglll.
_W—_—_
Reverse primer for
amplification of
PEPCase maize PEPCase
’-AGACTAGTGCCAGTGTTCTGCATGCCGGCGG3’ 13
59:! R . coding sequence,
Including restriction
site for enzyme Spei.
Forward primer for
' amplification of
355 5,”. F S‘-GGACTAGTAATGGCGAATGCTAGAGCAGCTTGAG —3' 14
CaMV 355 promoter
‘ sequence, including
ation] amandam
None set by amandam
[Annotation] m
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
ation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
ction site for
enzyme .5"ch
Reverse primer for
‘-GC(‘ACGTGTCCTCAGCTGGCGCGCCCGCCA- amplification of N05
Nos'i'Am, l‘A'lCCI‘G'l’CAAACACTGATAGT -3' terminator sequence,
.A._.___._.4
including restriction
site for enzyme Ascl,
8val,Pm/i
w « __- ...
Reverse rio'r'fl‘
amplification of Nos
S’—GGAC’I'AGTTTAATTCCCGA'I'Cl‘AGTAACA’l'AGA'l'GJ‘ terminator seq uence. 16
Including restriction
site for enzyme Spel.
Forvmw— ”W"
amplification of
(.an 355 promoter
'-A'l'C'l'GGCGCGCCAATGGCGAATGCTAGAGCAGC‘TTGAG 3‘ 17
sequence, including
restriction site for
enzyme Ascl.
Reverse primer for
qmplifica tion of
maize PEPCase
PEPCase “Va
’ - GTGCCTCAGCQTAGCCAGTGTTCTGCATGCCGG -3' coding sequence, 18
including restriction
site for enzyme
Bval.
__ '-
Forward primer raF'""'
ampliflcatlon of
hygromycin
hpt F S' - GAGGGCGAAGAATCTCG‘I'GC -3’ 19
phosphotransferase
for screening
transgenic plants.
Reverse primer for
amplification of
hygromycin
' - GATGTTGGCGACCl'CGTATTGG -3' 20
phosphotransferase
for screening
transgenic plants.
Forward primer for
PEPCase Exp 5' — ACG'i'CAGGAACITCCAGGTC -3‘ maize C, used
F for RT-PCR based
evaluation of
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
e transgene
expression.
Reverse primer for
maize PEPCase, used
PEPCase Exp for RT-PCR based
S’ — CTI'GTTCTCGTCGGCGAAC -3' 22
R tion of
PEPCase transgene
expression.
Forward primer for
tobacco GS, used
for RT-PCR based
' - TGGACCFGTTGAT -3' 23
tion of GS
tra nsgene
expression.
Reverse primer for
tobacco GS, used for
RT~PCR based
' - GGCAGCACTGTGCCTT -3' 24
tion of GS
transgene
expression.
fiorward primer for
soyabean AspAl' ,
used for RT-PCR
Asp/\T Exp F 5' - ATGGCTTCTCACGACAGCATC -3‘ 25
based evaluation of
GS transgene
expression.
e primer for
soyabean ASpAT,
used for RT-PCR
ASpAT Exp R 5' - TTGCGTGACACGTCATTTATGAGT -3' 26
based evaluation of
GS transgene
expression.
Forward primer for
ISSrRNA, used as
internal control for
S'-CACAATGATAGGMGAGCCGAC-3'
265 r- RT-PCR based 27
evaluation of
expression.
Reverse primer for
265 R S’WGGGAACGGGCTTGGCAGMTC-S’ ' ZSSrRNA, used as 28
internal control for
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] m
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
RT-PCR baséd
evaluation of
transgene expression
MAS!lDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVK|.NI.GVGAYRTEEG Represents Proteins
WRRVE
of AspAT genes
QQLINDVSRNKEYIPNGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGG
EFlAKHYHQRT
IYLPTPTWGNHEKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLIMCA
AspATPr HNPTGVDPTLE
QWEOJRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLG
LYGERVGALSIV
CKSADVASRVESQLKLVIRPMYSSPPIHGASIVA/\ILKDRNLFNDWTIELKAMADRIISM
RQELFDALG
RGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTKEHIIYMTSDGRISMAGLSSKTVPLLA
DAIHAAVTRW
_‘ _ __
MAIILSDLVNINLSDSTQKIIAEYIWIGGSGMDVRSKARTLSGPVDDPSKLPKWNYDG Represents Proteins
SSTGQAPGEDSEE
of 65 genes
ILYPQAIFKDPFRRGNNILVICDCYTPAGEPIPTNKRIiSMKlFSHPDWVEEPWYGLEQ
EYTLLQKDIN
WPLGWPIGGFPGPQGPYYCGIGAGKVFGRDIVDSHYKACLYAGINISGINGEVMPGQ
GSPr PSVGISA 30
ADELWAARYILERITEIAGVVVSF GDWNGAGAI ITNYSTKSMRNEGGYEVI KK
AIENLGLRHKEH
IAAVGEGNERRLTGRHETADINTFKWGVANRGASI RVGRDTEREGKGYFEDRRPASN
MDPFWI'SMIAET
TILSEP
PGPGEKHHSIDAQLRQLVPGKVSEDDKLIEYDALUEIFLNILQDLI (GPSIRE Represents Proteins
FVQEOIEVSAD
of PEPCase genes
YEGKGDTTKLGELGAKLTGLAPADAILVASSILI lMlN EVQIAHRRRNSKLKKG
GFADEGSATI'E
SDIEETLKRLVSEVG KSPEEVFEALKNQTVDLVFTN(PTQSARRSLLQKNARIRNCLTQL
DDDK
QELDEALQREIQAAFRTDEIRRAQPTPQAEMRYG MSYIHETVWKGVPKFLRRVDTAL
KNIGINERLPVNV
SLIRFSSWMGGDROGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCN
DELRVRAEELHSSS
GSKVTKYYIEFWKQIPPNEPYRVILGIWROKLYNTRERARHLLASGVSEISAESSFTSIEE
FLEPLELCY
KSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAIT‘I’HLGIGSYRE
PEPCdsePr WPEDKRQEWL
LSELRG KRPLLPPDLPQTDE IADVIGAFHVLAELPPDSFG ATAPSDVLAVELLQR
ECGVRQPLP
VVPLFERLADLOSAPASVERLFSVDWYM DRIKGKQQVMVGYSDSGKDAGRLSAAW
QLYRAQEEMAQVAKR
YGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVI EFCFGEEHLCFQ
AATLE
HGMHPPVSPKPEWRKLMDEMAWATEEYRSVWKEARFVEYFRSATPETEYGRMNI
GSRPAKRRPGGGIT
WIFSWTQTRFI ILPVWLGVGAAFKFAIDKDVRNFQVLKEMVNEWPFFRVTLD
LLEMVFAKGDPGI
AGLYDELLVAEELKPFGKQLR DKYVETQQLLLOJAGHKDILEGDPFLKQGLVLRNPYITI'
LNVFQAYTLK
RIRDPNFKVTPQPPLSKEFADEN KPAGLVKLNPASEYPPGLEDTLI LTMKGIAAGMQN
[Annotation] m
None set by amandam
[Annotation] amandam
ionNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
[Annotation] m
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by amandam
Amplification and cloning ofAspA T gene
Nucleotide sequence encoding soyabean cytosolic AspAT gene (SEQ ID NO: 1) was obtained
from the NCBI database of tide sequences (GenBank Accession No. AFO34210.1;
(hgpzllwwwncbinlm.nih.gov/nuccore/AF034210.l) RNA from soyabean plant was isolated
using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/LN). cDNA was
sized using total RNA preparations (2 pg) in the presence of 1 pg oligo(dT).2.|3 and
400 U of reverse transcriptase Superscript II (Invitrogen) afier digesting with 2 U DNase I
(amplification grade, lnvitrogen, USA) following the manufacturer’s instructions. The full
coding region of AspAT was then amplified from soyabean cDNA using primers AspAT Es!"
F (SEQ ID NO: 10) and AspAT pm“ R (SEQ ID NO: 11) such that restriction sites Bglll
I) and Pmll G) is incorporated in the coding sequence for AspA T. Qiagen
High Fidelity Taq polymerase enzyme was used for the PCR using the following conditions:
initial denaturating at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 seconds, annealing at 59
°C for 305econds, extension at 72 °C for 1 minute 20 seconds, with a final ion of 72 °C
for 7 s. The amplification product was cloned in to pGEM-T easy vector (Promega,
USA). Plasmid from the positive clones and pCAMBIA 1302 plasmid were ed with
Bglll and Pmll and digested products isolated from an agarose gel electrophoresis were
ligated and transformed in to E. coli DHSa cells which were obtained from Takara Bio
Company, Japan (Cat. No. 9057). d from the positive colonies were sequenced to
verify the in frame cloning of the AspAT coding sequence placed between CaMV 3SS
promoter (SEQ ID NO: 4) and Nos terminator (SEQ ID NO: 5) of AI302 and
resulting vector was designated as AspATzzpCAMBIAl302. '
EXAMPLE 2
Amplification and cloning of GS gene
Nucleotide sequence encoding tobacco cytosolic GS gene (SEQ ID NO: 2) was obtained from
the NCBI database of nucleotide sequences (GenBank Accession No. X95932.1;
ihttp://www.ncbi.nlm.nih.gov/nuccore/X95932.l) .RNA from o plant was isolated
using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/lN). cDNA was
synthesized using total RNA preparations (2 pg) in the presence of 1 pg oligo(dT)lz..3 and
400 U of reverse transcriptase cript II (Invitrogen) afier digesting with 2 U DNase I
(amplification grade, Invitrogen, USA) following the manufacturer‘s instructions.
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
ation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by amandam
[Annotation] m
Unmarked set by amandam
[Annotation] m
None set by m
[Annotation] amandam
MigrationNone set by amandam
[Annotation] amandam
Unmarked set by m
The full coding region of GS was amplified from tobacco cDNA using primers GSA/m. F with
restriction sites NcoI (CCATGG) (SEQ ID NO: 8) and 05mm R with restriction sites for
BstEII (GGTGACC) (SEQ ID NO: 9). 68”“. F primers was modified so as to eliminate the
BgIII site by ement of ‘A’ nucleotide by ‘G ‘ at posiu'on 15.
Qiagen High Fidelity Taq polymerase enzyme was used for the PCR using the following
conditions: initial denaturating at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 seconds,
annealing at 59 °C for 305econds, extension at 72 °C for lminute 10 s, with a final
extension of 72 °C for 7 minutes. The amplification product was cloned in to pGEM-T easy
vector (Promega, USA). Plasmids from the positive colonies and binary vector pCAMBIA
1302 were digested with Neal and BstEII and digested product isolated from an agarose gel
electrophoresis were ligated such that GS is placed downstream of CaMV 3SS promoter of
pCAMBIA vector. The on product was transformed in to E. cali DHSa cells and
transformants were sequenced to verify the in frame claning of the GS coding sequence and
the resulting vector was designated as GS::pCAMBIAl302.
Amplification and cloning of maize PEPCase gene
Nucleotide sequence encoding maize PEPCase gene (SEQ ID NO: 3) was ed from the
NCBI database of nucleotide ces (NCBI Reference Sequence: NM_OOIlll948.I;
(http://www.ncbi.nIm.nih.gov/nuccore/NM 948.” RNA fi'om maize plant was
isolated using iRIS Plant RNA Kit (Ghawana et al., US Patent no 0344NF2004/IN). cDNA
was synthesized using total RNA preparations (2 pg) in the presence of 1 ug oligo(dT).2..3
and 400 U of reverse transcriptase Superscript II (Invitrogen) after digesting with 2 U DNase
I (amplification grade, Invitrogen, USA) following the cturer’s instructions.
The full coding region of PEPCase was amplified fiom maize cDNA using primers PEPCase
331" F with ction sites for BglII (AGATCI ) (SEQ ID NO: 12) and PEPCaSe 5,,“ R with
restricition sites for SpeI (ACTAGI) (SEQ ID NO: 13). Qiagen High Fidelity Taq
polymerase enzyme supplemented with Q-soiution (facilitating amplification of GC-rich
templates) was used for PCR using the following conditions: initial denaturating at 94 °C for
3 minutes, 32 cycles of 94 °C for 30 seconds, annealing at 58 “C for 30 seconds, extension at
72 °C for 3 minute, with a final extension of 72 °C for 7 minutes. The amplification product
was cloned in to pGEM-T easy vector (Promega, USA). Plasmid from the positive clones and
pCAMBIA 1302 plasmids were digested with BgIII and SpeI and digested product isolated
[Annotation] amandam
None set by amandam
[Annotation] amandam
MigrationNone set by m
[Annotation] amandam
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from an e gel electrophoresis were ligated and then transformed in to E. coli DHSo
cells. Transformants were sequenced to verify the in frame cloning of the PEPCase coding
sequence and resulting vector was designated as PEPCasezzpCAMBlA 1302.
EXAMPLE 4
Assembly of expression tes for Asp/1T, GS and e in single pCAMBIA 1302
vector (generous g1]? from “Centre for Application of lar Biology to International
Agriculture ", A ustralia)
A stepwise method for amplification and integration of expression cassettes each for AspA T,
GS and PEPCase in to single plant ormation vector A 1302 is described as
follows:
GS expression cassette comprising CaMV3SS promoter, downstream cloned GS and nopaline
synthase (hereinafler, referred as “Nos”) terminator was amplified from 08:: pCAMBlA
1302 vector
( Example 2 ), using primers 358 5,,“ F( SEQ ID NO: l4) and NosT Am, R (SEQ ID
NO: 15). The primers were designed to incorporate the Spel (ACTAGT) in the forward
primer and Ascl (GGCGCGCC ), Bva'I (CCTCAGC)and Pmll (CACGTG) in e primer
to facilitate the subcloning of OS expression cas3ette in to SpeI and PmlI sites ofpCAMBlA
1302 vector as well as to create the additional restriction sites ( Ascl 3’ end in
, BvaI ) at
the vector backbone . Qiagen High Fidelity Taq polymerase enzyme was used for the PCR
using the following conditions: initial denaturating at 94 °C for 3 minutes , 30 cycles of 94 °C
for 30 seconds, annealing at 59 °C for 30 seconds, extension at 72 °C for 2 minutes, with a
final extension of 72 °C for 7 minutes. The amplification t was cloned in to pGEM-T
easy vector (Promega, USA). Plasmids from the positive clones was digested with 81221 and
Pmll, and the digested t was then isolated from an agarose gel electrophoresis and
ligated in to Spel and PmlI sites of pCAMBIA 1302 vector. The ligation product was
transformed in to E. coli DHSa cells and transformants were verified by sequencing of
plasmid.
AspAT coding sequence along with 3’Nos terminator sequence was amplified from AspATz:
pCAMBIA I302 vector (Example 1 ) using primers AspAT fig/ll F (SEQ ID NO: 10) and
NosT 5-,”. (SEQ ID NO: 16) with restriction sites for BgIII (AGATCT) and SpeI (ACTAGjl)
respectively.
Qiagen High Fidelity Taq polymerase enzyme was used for the PCR using the following
conditions: initial denaturation at 94 °C for 3 minutes °C for 30 seconds,
, 30 cycles of 94
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annealing at 59 °C for 30 s, extension at 72 °C for 2 minutes, with a final extension of
72 °C for 7 minutes. The amplification product was cloned in to pGEM—T easy vector
(Promega, USA). Plasmids from the positive clones upon digestion with BgIII and SpeI ,
cloned downstream of CaMV 35$ promoter of destination pCAMBIA 1302 ( previously
cloned with GS expression cassette). The ligation product was then transformed in to E. coli
DHSa cells and transformants were sequenced to verify the in frame cloning of the AspAT
coding sequence.
CM 358 promoter along with the downstream cloned PEPCase gene from e::
pCAMBIA 1302 vector (example 3) was amplified with the primers 358 A“! F (SEQ ID NO:
17) having restriction site for AscI (GQCGCGCC) and PEPCase awe. R (SEQ ID NO: 18)
having restriction site for Bb VCI (CCTCAGC). ‘
Qiagen High ty Taq polymerase enzyme was used for the PCR using the following
conditions: initial denaturation at 94 °C for 3 minutes
, 30 cycles of 94 °C for 30 seconds,
annealing at 60 °C for 30 seconds, ion at 72 °C for 4 minutes, with a final extension of
72 °C for 7 minutes. The amplification product was cloned in to pGEM-T easy vector
(Promega, USA), plasmid from the positive clones was ed with AscI (GGCGCGCC)
and BbVCI (CCTCAGC) and digested product isolated from an agarose gel electrophoresis
d upstream of Nos terminator sequence of destination pCAMBIA. 1302 previously
cloned with GS and AspAT sion cassettes. The ligation product was transformed in to
E. coli DHSa cells and transformants sequenced to verify the in frame cloning of the
PEPCase coding sequence. Resultant plant expression vector was designated as AspAT + GS
+ PEPCase for co-overexpression of AspAT, GS and e. A hygromycin resistance
gene (SEQ ID No.6) was included as a selectable marker for screening enic plants.
Schematic diagram of expression construct is shown in Figurel, represented by SEQ ID NO.
7 for plant transformation such that the transgenic plant produces higher amount of proteins
represented by SED ID NO. 29. 30, and 31.
Raising of transgenic Arabidopsis plants co« over expressing genes AspAT. GS and
PEPCase
Generation of plant expression vector (AspAT + GS + PEPCase)
Briefly, the plant expression vector was constructed as s: cDNA sequences encoding
soybean AspAT gene (SEQ ID NO: 1), o cytosolic GS gene (SEQ ID NO: 2) and maize
PEPCase gene (SEQ ID NO: 3), were first independently cloned in to pCAMBIA 1302
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vector. The elements for sion cassette for AspAT, GS and PEPCase were then
amplified and assembled in to ation pCAMBlAl302 such that genes AspAT, GS and
PEPCase were controlled by independent CaMV 35$ promoter and Nos transcriptional
terminator.
Agrobacterium mediated plant transformation:
AspAT + GS + PEPCase were transferred to Agrobacterium tumefaciens strain GV3101 with
ATCC number Agrobacterium tumefaciens (GV3101 (pMP90RK) (C58 derivative) ATCC®
Number: 33970 Reference: Hayashi H, Czaja I, Lubenow H, Schell J n R. 1992 using
standard triparental mating method.
Briefly, E. coli DHSa cells harboring the recombinant construct AspAT + G8 + PEPCase and
those harboring helper plasmid 3 were Cultured overnight at 37°C. Agrobaterium
strain GV3101 grown at 28°C for 48hrs. All the three cultures were then pelleted, washed,
and mixed, followed by plating on YEM (Yeast Extract Mannitol) plates supplemented with
the antibiotics kanamycin (SOuyml) and cin (50ug/ml). Antibiotic resistant colonies
were verified by colony PCR to assure the transformation of Agrobacterium with the
inant construct AspAT + GS + PEPCase.
Arabidopsis seeds of the Columbia ecolype were generous gifi by Dr. Christine H Foyer
of; IACR-Rothamsted, Harpenden, UK.
Arabidopsis plants were transformed with cteria harboring AspA'I‘ + GS + PEPCase
using vaCuum infiltration method. Briefly, liquid S-ml cultures were established from single
transformed Agrobaclerium colony and grown in YEM medium supplemented with SOug/ml
kanamycin, SOug/ml rifampicin at 28°C up to the late thmic phase. Next, 1 ml of
bacterial suspension Was diluted with 100 ml of YEB culture medium supplemented with the
same antibiotics. The culture was grown overnight until their optical density reached 1.2—1.8
at 600 nm. The bacteria were spinned for 20 min at 2000 g at room temperature and
suspended in a solution for infiltration containing half th MS (Murashige and Skoog)
medium with 2% sucrose, 0.05% MES (Sigma,) and 0.01% of Silwet L-77 (Lehle Seeds,
United States). Arabidopsis inflorescences were dipped in bacterial suspension and ated
under vacuum for 10 minutes. Plants were then erred to growth chamber and grown
under controlled long day conditions (16-h light at C and 8-h darkness at 20°C) for
seed set.
Selection of y transformant To transgenic Arabidopsis plant: Seeds from
transformed plants were surface ized by immersion in 70% (v/v) ethanol for 2 min,
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followed by immersion in 10% (v/v) sodium hypochlorite solution. Seeds were then washed
four times with sterile led water and sown onto 1% agar containing MS medium
supplemented with hygromycin B at a cancentration of 20 pg ml'I (Sigma # H3274). Seeds
were then stratified for 2 days in the dark at 4°C. After stratification plates were transferred to
a growth r with 16 h light and 8 h dark cycle for germination. After 14.days,
hygromycin resistant seedlings were selected as putative primary ormants (To) sand
transferred to pots containing vermiculite, e and at mix (1:111) and grown to
maturity under cantrolled conditiou of light, temperature and humidity for growth and seed
set.
Raising T1 and '1'; generation AspAT + GS + PEPCase transgenic plants: Seeds
harvested from To transgenic plants were germinated on MS + hygromycin B (at a
cancentration of 20ug ml") plates and transgenic lines exhibiting a segregation ratio of 3:1
(scored by their ivity to hygromycin B) were selected to raise T1 generation of
transgenic plants . gous enic plants were obtained in the T2 generation and
evaluated for different physiological and biochemical parameters in comparison to wild
control plants.
EXAMPLE6
Analysis of the Genomic DNA from Arabidopsis thaliana plants transformed with
AspAT + GS + PEPCase
Arabidopsis plants from two independent transgenic lines ormed with AspAT + GS +
PEPCase were selected to verify the insertion of transgenes in to plant . The genomic
DNA was isolated using DNeasy Plant mini kit (QIAGEN Co.). PCR was carried out by
using the isolated DNA as te with primers hpt F (SEQ ID NO: 19) and hp! R (SEQ ID
NO: 20) annealing to the hygromycin transferaes (hp!) gene (SEQ ID NO: 6) (plant
selection marker from pCAMBIA 1302 vector).
PCR Cycling conditions defined by initial denaturation at 94 °C for 3 minutes
, 28' cycles of
94 °C for 30 s, annealing at 58 “C for 30 secOnds, extension at 72 °C for 1 minute, *
with a final extensiOn of 72 “C for 7 minutes.
The result is shown in Figure 2A, in which WT represents the wild and L1 and L2 represent
two different transgenic lines. The amplification of hpt gene was observed only with
transgenic confirming insertion of AspAT+GS+PEPCase in to Arabidopsis plants.
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EXAMPLE?
Evaluation of AspAT + GS + PEPCase transgenics by reverse transcriptase -
rase chain reaction (RT-PCR)
RNA analysis of transformants was done to confirm the expression of Asp/1T, GS and
PEPCase. Total RNA was isolated from leaf and root of transgenic plants using iRIS Plant
RNA Kit (Ghawana er al., US Patent no 0344NF2004/IN). cDNA was synthesized using total
RNA preparations (2 pg) in the presence of 1 pg dT).2.lg and 400 U of reverse
riptase Superscript II (lnvitrogen) afier digesting with 2 U DNase I (amplification
grade, lnvitrogen, USA) following the manufacturer’s instructions). Expression of
enes was evaluated using gene specific primer for AspAT, GS and PEPCase. designated
as PEPCase Exp F (SEQ ID NO: 21), PEPCase Exp R (SEQ ID NO: 22), GS Exp F (SEQ ID
NO: 23), GS Exp R (SEQ ID NO: 24), AspAT Exp F (SEQ ID NO: 25) and ASPAT Epr
(SEQ ID NO: 26). As a positive c0ntrol for RT-PCR, 26$ rRNA was amplified using primers
268 F (SEQ ID NO: 27) and 268 R (SEQ ID NO: 28).
The results of analyses are shown in Figure ZB, in which WT ents wild and L1 and L2
ent two transgenic lines. The amplification of RT—PCR products were ed only in
trangenics confirming the expression of introduced genes.
EXAMPLE 8
Enzymatic assays from wild type and AspAT + GS + PEPCasetransgenic opsis
plants
Enzymatic assays were performed with AspAT + GS + PEPCase enic and wild plants
as follows:
PEPCase Activity Measurement: Frozen leaf samples (200 mg) ground with a mortar and
pestle in lml of extraction buffer containing 50 mM Tris-Cl buffer (pH 7.5), 1.0 mM MgCl2,
.0 mM DTT, 1.0 mM PMSF, 2% (w/v) PVPP, 10% (v/v) glycerol and 0.1% (v/v) Triton X—
100. The extract was centrifuged at 12,000 g for 10 min at 4 °C and the supernatant was used
for the determination of enzyme activity. PEPCase was assayed Spectrophotometrically at
340 nm in the presence of excess MDH and lactate dehydrogenase (Ashton et al. 1990). The
reaction mixture contained 50 mM Tris-Cl (pH 8.0), 5 mM MgC12, 5 mM DTT, 1 mM
NaHCO;, 5 mM glucose—6-phosphate, 0.2 mM NADH, 2 units MDH, 0.1 units lactate
dehydrogenase and crude extract. The on was initiated by the addition of 5 mM PEP.
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AspAT Activity Measurement: Extraction buffer for AspAT consisted of 200 mM Tris-Cl
buffer (pH 7.5), 2.0 mM EDTA and 20% glycerol.
The enzyme was assayed in an MDH-coupled reaction essentially as described by Ireland and
Joy (1990). Briefly the reaction e contained 10 mM 2-oxoglutarate, 2 mM aspartate,
0.2 mM NADH, and 50 mM HEPES buffer (pH 8.0). Reaction was started by addition of 2-
tarate. Assay control was run by excluding the 2-oxoglutarate from the reaction mix.
GS Activity Measurement: GS (glutamine synthetase) was extracted in the grinding
medium containing 50 mM'Tris-Cl buffer (pH 7.8), 1 mM EDTA, 10 mM MgSO.:, 5 mM
sodium glutamate, 10% (v/v) glycerol and insoluble PVPP (2% w/v). Enzyme assay was
performed as described earlier by Lea et a1. (1990) and the activity was calculated from the
standard curve prepared with y—glutamylhydroxamate.
The results of the analyses are shown in the Figure 5A to SC, an se of about 45 to 50%
in e activity, 55% in GS ty and 55 to 60% in AspAT ty was observed with
two independent AspAT + GS + PEPCase transgenic plants compared to wild plants.
EXAMPLE 9
C and N analyses in wild and AspAT + GS + PEPCase enic Arabidopsis plants
Seeds of AspAT + GS + PEPCase transformed Arabiopdris thaliana plants and wild control
plants were germinated on half strength MS plates supplemented with 20g/l sucrose. 14 days-
old seedlings were transferred to pots ning mix of vermiculite,- perlite and coco peat in
the ratio of 1:1 :1 and grown under long-day conditions comprising 16 hours of light period at
22°C and 8 hours of dark period at 20°C maintained in the Arabidopsis growth chamber.
Different plant parts including rosette leaf, stem, cauline leaf and green pods were harvested
from 65 —days old plants and dried at 80 °C for 48 hrs. The quantitative determination of the
C and N elements was conducted with Elementar CHNS analyzer using sulfanilamide as
standard. The results are shown in Figure 6. The elementary analysis showed that the total C
and N content in AspAT + GS + PEPCase transgenic plant leaves has significantly increased
by co-overexpression of AspAT, GS and PEPCase compared to wild .
EXAMPLE 10
Investigation of growth and yield in wild and AspAT+GS+PEPCase transgenic plants
Wild and AspAT + GS + PEPCase transgenic plants were analyzed for different growth
characteristics. Shoot, root fresh and dry weight was recorded for 60-days old plants. Across
ent parameters evaluated, AspAT + GS + PEPCase plants showed enhanced growth
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characteristics. In particular, the transgenic plants have more number of leaves per rosette
having larger area. enic plants exhibited about 70% increase in the shoot fresh weight
with 60% increase in the shoot dry weight whereas the increase of about 40% and 30 % was
observed in the root fresh and dry weight respectively ( shown in Figure 3).
Total number of pods from 72-days old AspAT + GS + PEPCase transgenic plants was
calculated and compared to untransformed wild plants (shown in Figure 7 a). Furthermore
total seed yield (total seed weight per plant) was also measured for transgenic and control
plants. Across both the parameters, AlspAT + GS + PEPCase transgenic Arabidopsis plant
showed increase in yield compared to wild plants as shown in Figure 7 b.
ADVANTAGES OF THE INVENTION
1. There have have been efforts to enhance carbon and nitrogen status of plants, a step
towards food security.
2. The present invention provides an innovative approach wherein overexpression of
PEPCase provides a carbon skeleton to capture nitrogen assimilated through over
expression ofAspA Tand GS.
3. The improved capacity of plant for carbon and nitrogen capture was also reflected in
improved plant tivity both in terms of plant seed and plant biomass production.
The