KR20210095828A - Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p - Google Patents

Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p Download PDF

Info

Publication number
KR20210095828A
KR20210095828A KR1020210097595A KR20210097595A KR20210095828A KR 20210095828 A KR20210095828 A KR 20210095828A KR 1020210097595 A KR1020210097595 A KR 1020210097595A KR 20210097595 A KR20210097595 A KR 20210097595A KR 20210095828 A KR20210095828 A KR 20210095828A
Authority
KR
South Korea
Prior art keywords
liver cancer
mir
exosomes
expression level
kit
Prior art date
Application number
KR1020210097595A
Other languages
Korean (ko)
Other versions
KR102317132B1 (en
Inventor
은정우
조효정
정재연
김순선
Original Assignee
아주대학교산학협력단
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 아주대학교산학협력단 filed Critical 아주대학교산학협력단
Priority to KR1020210097595A priority Critical patent/KR102317132B1/en
Publication of KR20210095828A publication Critical patent/KR20210095828A/en
Application granted granted Critical
Publication of KR102317132B1 publication Critical patent/KR102317132B1/en

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/178Oligonucleotides characterized by their use miRNA, siRNA or ncRNA

Abstract

The present invention relates to an exosome miRNA panel marker composition for early diagnosis of liver cancer for non-invasive in-vitro diagnosis. In order to find a novel serum liver cancer biomarker, microRNA inside exosomes secreted by liver cancer cells was analyzed so as to identify microRNA specifically overexpressed in the liver cancer exosomes. As a result, a novel serum biomarker with high diagnostic accuracy in early-stage liver cancer for which there are currently no reliable biomarkers was discovered. Accordingly, a genome and proteome of cancer cells was checked using the exosomes without histological examination, and therefore, there is a high possibility that the exosomes can be used as a useful diagnostic biomarker in a group of diseases with a high risk from histological examination, such as liver cancer.

Description

miR-4661-5p의 발현수준을 측정할 수 있는 제제를 포함하는 간암 진단용 키트{Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p}Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p

본 발명은 비침습적 체외진단을 위한 조기간암 진단용 엑소좀 miRNA 패널마커 조성물에 관한 것이다.The present invention relates to an exosome miRNA panel marker composition for early cancer diagnosis for non-invasive in vitro diagnosis.

간암은 한국인에게 많이 생기는 암종 중 하나로, 2015년에는 발생률이 10만명당 남자 29.5명, 여자 8.2명으로 남성에서 4위, 여성에서 6위를 차지하였고, 사망률도 높아 2015년 전체 암사망자 중 간암이 남성에서 2위, 여성에서 3위를 차지할 만큼 예후가 나쁜 악성 종양이다.Liver cancer is one of the most common cancers in Koreans. In 2015, the incidence rate was 29.5 males and 8.2 females per 100,000, ranking 4th among males and 6th among females. It is a malignant tumor with a poor prognosis, ranking 2nd in women and 3rd in women.

간암 환자 대부분은 기저 간경변증으로 인해 조직 검사시 출혈의 위험성이 높아 상당한 위험을 부담해야 하는데, 이에, 혈액을 기반으로 간암을 조기 진단하고 유전 정보를 획득하는 액체 생검 기술 (Liquid biopsy) 개발이 필요하다. 조직검사는 상당한 위험 부담을 감수해야 하는 것에 비해 혈액으로 진단이 가능하므로 침습적이지 않고 간편하다. 혈액은 조직검사와 달리 치료 과정 중 여러 번 채혈이 가능, 치료 과정 중 치료 반응이나 잔존암 예측에 적합하다.Most liver cancer patients have to bear a significant risk due to the high risk of bleeding during biopsy due to underlying liver cirrhosis. . Biopsy is not invasive and convenient because it can be diagnosed with blood, compared to taking a significant risk. Unlike biopsy, blood can be collected multiple times during the course of treatment, making it suitable for predicting treatment response or residual cancer during treatment.

엑소좀 (exosome)은 암세포를 포함한 대부분의 유핵 세포로부터 생성/분비되는 30-150nm 크기의 작은 나노 소포체 (nano-vesicle)로서, 액체 생검 기술의 선두 주자로 혈액, 소변, 복수, 타액 등 다양한 체액에서 검출되는데, 모세포 (parent cell)의 특이 유전 정보를 수하물(exosomal cargo)로 싣고, 표적 세포에 전달한다. 최근, 엑소좀은 세포-세포간 교류 (cell-cell communication)의 핵심 물질로 주목받고 있으며, 암세포 유래 엑소좀은 종양 침투 및 전이의 핵심 물질로 지목되고 있다. 암세포 엑소좀은 모세포 유전 정보를 종양 미세환경의 다른 표적 세포에 전달하여 정상 세포를 악성화시키는데, 모세포인 암세포 아바타 역할을 수행하는 것으로 추측되고 있다.Exosomes are small nano-vesicles with a size of 30-150 nm that are generated/secreted from most nucleated cells including cancer cells. It is detected in , and the specific genetic information of the parent cell is loaded into the exosomal cargo and delivered to the target cell. Recently, exosomes have been attracting attention as a key material for cell-cell communication, and cancer cell-derived exosomes have been pointed out as a key material for tumor invasion and metastasis. Cancer cell exosomes transfer maternal genetic information to other target cells in the tumor microenvironment to malign normal cells, and it is speculated that they serve as the parental cancer cell avatar.

한편, 이전부터 간암 진단 마커로 활용되는 알파태아단백(alpha-fetoprotein; AFP)의 경우, 간암 진단 예민도가 60% 가량에 불과한데, 현재까지 간암은 신뢰성 있는 혈청 바이오마커가 없어, 조기 진단 및 예후, 치료 반응 예측을 위한 차세대 혈청 간암 바이오마커 발굴이 절실한 상황이다.On the other hand, in the case of alpha-fetoprotein (AFP), which has been previously used as a diagnostic marker for liver cancer, the diagnostic sensitivity for liver cancer is only about 60%. , there is an urgent need to discover next-generation serum liver cancer biomarkers for predicting treatment response.

한국등록특허 제10-1987358호 (2019.06.03 등록)Korean Patent Registration No. 10-1987358 (Registered on June 3, 2019)

본 발명의 목적은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공하는데 있다.It is an object of the present invention to provide a biomarker composition for diagnosing liver cancer comprising one or more miRNAs selected from miR-4661-5p and miR-4746-5p as an active ingredient.

또한, 본 발명의 다른 목적은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물 및 이를 포함하는 간암 진단용 키트를 제공하는데 있다.In addition, another object of the present invention is a composition for diagnosing liver cancer comprising an agent capable of measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p as an active ingredient, and a kit for diagnosing liver cancer comprising the same is to provide

또한, 본 발명의 또 다른 목적은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공하는데 있다.In addition, another object of the present invention is to provide a method for providing information necessary for diagnosing liver cancer, comprising measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p.

상기 목적을 달성하기 위하여, 본 발명은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공한다.In order to achieve the above object, the present invention provides a biomarker composition for diagnosing liver cancer comprising at least one miRNA selected from miR-4661-5p and miR-4746-5p as an active ingredient.

또한, 본 발명은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물을 제공한다.In addition, the present invention provides a composition for diagnosing liver cancer comprising, as an active ingredient, an agent capable of measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p.

또한, 본 발명은 상기 조성물을 포함하는 간암 진단용 키트를 제공한다.In addition, the present invention provides a kit for diagnosing liver cancer comprising the composition.

또한, 본 발명은 (1) 환자에서 분리된 시료로부터 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정하는 단계; (2) 상기 측정된 miRNA의 발현수준을 대조군 시료와 비교하는 단계; 및 (3) 상기 측정된 miRNA의 발현수준이 대조군 시료보다 높을 경우 간암으로 판단하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공한다.In addition, the present invention comprises the steps of (1) measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p from a sample isolated from a patient; (2) comparing the measured expression level of miRNA with a control sample; And (3) when the measured expression level of the miRNA is higher than that of the control sample, it provides a method of providing information necessary for diagnosing liver cancer, comprising the step of determining that it is liver cancer.

본 발명은 비침습적 체외진단을 위한 조기간암 진단용 엑소좀 miRNA 패널마커 조성물에 관한 것으로서, 새로운 혈청 간암 바이오마커를 찾기 위해 간암 세포가 분비하는 엑소좀 내부의 microRNA를 분석하여, 간암 엑소좀에서 특이적으로 과발현되는 microRNA를 규명하여, 현재 신뢰성 있는 바이오마커가 없는 조기 간암에서 진단적 정확도가 높은 새로운 혈청 바이오마커를 발굴하였다. 이와 같이, 엑소좀을 이용하여 조직 검사 없이 암세포 유전체 및 단백체를 확인함으로, 향후 간암처럼 조직 검사에 따른 위험이 큰 질환군에서 유용한 진단 바이오마커로 활용될 가능성이 매우 높다.The present invention relates to an exosome miRNA panel marker composition for early-stage cancer diagnosis for non-invasive in vitro diagnosis. In order to find a new serum liver cancer biomarker, the microRNA inside the exosome secreted by liver cancer cells is analyzed to be specific in the liver cancer exosome. By identifying microRNAs that are overexpressed with , a new serum biomarker with high diagnostic accuracy was discovered in early liver cancer, where there are currently no reliable biomarkers. As such, by using exosomes to identify the cancer cell genome and proteomic without biopsy, it is highly likely to be utilized as a useful diagnostic biomarker in a disease group with a high risk of biopsy, such as liver cancer in the future.

도 1은 엑소좀 정제 및 분리를 위한 모식도이다.
도 2는 본 발명에 사용된 환자 코호트 구성을 나타낸다.
도 3은 조기 간암 및 진행성 간암 특이적으로 과발현되는 miRNA를 동정한 결과를 나타낸다.
도 4는 테스트 및 검증 코호트에서의 6개 miRNA 간암 진단력을 나타낸다.
도 5는 mUICC 병기에 따른 이미지이다.
도 6(A)는 전체 코호트에서 혈청 AFP 및 2가지 조합 패널의 간암 진단의 AUC 결과를 나타낸다. 도 6(B)는 전체 코호트에서 혈청 AFP 및 2가지 조합 패널의 mUICC II 이하 조기 간암 진단의 AUC 결과를 나타낸다. 도 6(C)는 전체 코호트에서 혈청 AFP 및 2가지 조합 패널의 mUICC I 이하 조기 간암 진단의 AUC 결과를 나타낸다.
1 is a schematic diagram for exosome purification and separation.
2 shows the patient cohort configuration used in the present invention.
3 shows the results of identifying miRNAs specifically overexpressed in early liver cancer and advanced liver cancer.
Figure 4 shows the diagnostic power of 6 miRNA liver cancer in test and validation cohorts.
5 is an image according to the mUICC stage.
Figure 6(A) shows the AUC results of liver cancer diagnosis of serum AFP and two combination panels in the entire cohort. 6(B) shows the AUC results of mUICC II or lower early liver cancer diagnosis of serum AFP and two combination panels in the entire cohort. 6(C) shows the AUC results of early liver cancer diagnosis below mUICC I of serum AFP and two combination panels in the entire cohort.

본 발명은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공한다.The present invention provides a biomarker composition for diagnosing liver cancer comprising one or more miRNAs selected from miR-4661-5p and miR-4746-5p as an active ingredient.

상세하게는, 상기 조성물은 miR-25-3p 및 miR-1269a 중에서 선택된 어느 하나 이상의 miRNA를 추가적으로 포함할 수 있다.Specifically, the composition may additionally include any one or more miRNAs selected from miR-25-3p and miR-1269a.

바람직하게는, 상기 miRNA는 엑소좀 유래일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the miRNA may be derived from an exosome, but is not limited thereto.

본 발명의 "miR-4661-5p"는 miRBase accession no. MIMAT0019729 일 수 있고, 구체적인 서열은 서열번호 1(AACUAGCUCUGUGGAUCCUGAC)로 기재하였다."miR-4661-5p" of the present invention is miRBase accession no. It may be MIMAT0019729, and the specific sequence is described as SEQ ID NO: 1 (AACUAGCUCUGUGUGGAUCCUGAC).

본 발명의 "miR-4746-5p"는 miRBase accession no. MIMAT0019880 일 수 있고, 구체적인 서열은 서열번호 2(CCGGUCCCAGGAGAACCUGCAGA)로 기재하였다."miR-4746-5p" of the present invention is miRBase accession no. It may be MIMAT0019880, and the specific sequence is described as SEQ ID NO: 2 (CCGGUCCCAGGAGAACCUGCAGA).

본 발명의 "miR-25-3p"는 miRBase accession no. MIMAT0000081 일 수 있고, 구체적인 서열은 서열번호 3(CAUUGCACUUGUCUCGGUCUGA)으로 기재하였다."miR-25-3p" of the present invention is miRBase accession no. It may be MIMAT000081, and the specific sequence is described as SEQ ID NO: 3 (CAUUGCACUUGUCUCGGUCUGA).

본 발명의 "miR-1269a"는 miRBase accession no. MIMAT0005923 일 수 있고, 구체적인 서열은 서열번호 4(CUGGACUGAGCCGUGCUACUGG)로 기재하였다."miR-1269a" of the present invention is miRBase accession no. It may be MIMAT0005923, and the specific sequence is described as SEQ ID NO: 4 (CUGGACUGAGCCGUGCUACUGG).

본 명세서에서 용어 "진단"은 특정 질병 또는 질환에 대한, 한 객체의 감수성(susceptibility)을 판정하는 것, 한 객체가 특정 질병 또는 질환을 현재 가지고 있는지 여부를 판정하는 것, 특정 질병 또는 질환에 걸린 한 객체의 예후(prognosis)를 판정하는 것, 또는 테라메트릭스(therametrics)(예컨대, 치료 효능에 대한 정보를 제공하기 위하여 객체의 상태를 모니터링하는 것)를 포함한다.As used herein, the term "diagnosis" refers to determining a subject's susceptibility to a particular disease or condition, determining whether a subject currently has a particular disease or disorder, or having a particular disease or disorder. Determining a subject's prognosis, or therametrics (eg, monitoring a subject's condition to provide information about treatment efficacy).

또한, 본 발명은 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물을 제공한다. In addition, the present invention provides a composition for diagnosing liver cancer comprising, as an active ingredient, an agent capable of measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p.

상세하게는, 상기 조성물은 miR-25-3p 및 miR-1269a 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정할 수 있는 제제를 추가적으로 포함할 수 있다.Specifically, the composition may further include an agent capable of measuring the expression level of any one or more miRNAs selected from miR-25-3p and miR-1269a.

상세하게는 상기 miRNA의 발현수준을 측정할 수 있는 제제는 상기 miRNA에 특이적으로 결합하는 프라이머 또는 프로브일 수 있으나, 이에 한정되는 것은 아니다.Specifically, the agent capable of measuring the expression level of the miRNA may be a primer or a probe that specifically binds to the miRNA, but is not limited thereto.

바람직하게는, 상기 간암은 조기 간암일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the liver cancer may be early liver cancer, but is not limited thereto.

또한, 본 발명은 상기 조성물을 포함하는 간암 진단용 키트를 제공한다.In addition, the present invention provides a kit for diagnosing liver cancer comprising the composition.

본 명세서에서 용어 "프라이머"는 짧은 자유 3-말단 수산화기(free 3' hydroxyl group)를 가지는 핵산 서열로 상보적인 템플레이트(template)와 염기쌍을 형성할 수 있고 템플레이트 가닥 복사를 위한 시작 지점으로서 작용하는 짧은 핵산 서열을 말한다. 프라이머는 적절한 완충용액 및 온도에서 중합반응을 위한 시약(즉, DNA 폴리머라제 또는 역전사효소) 및 상이한 4 가지의 뉴클레오사이드 트리포스페이트의 존재하에서 DNA 합성을 개시할 수 있다. PCR 조건, 센스 및 안티센스 프라이머의 길이는 당업계에 공지된 기술에 따라 적절히 선택될 수 있다.As used herein, the term "primer" refers to a nucleic acid sequence having a short free 3' hydroxyl group, capable of base pairing with a complementary template and serving as a starting point for template strand copying. nucleic acid sequence. The primer is capable of initiating DNA synthesis in the presence of a reagent for polymerization (ie, DNA polymerase or reverse transcriptase) and four different nucleoside triphosphates in an appropriate buffer and temperature. PCR conditions and lengths of sense and antisense primers may be appropriately selected according to techniques known in the art.

본 명세서에서 용어 "프로브"는 mRNA외 특이적으로 결합을 이룰 수 있는 짧게는 수 염기 내지 길게는 수백 염기에 해당하는 RNA 또는 DNA 등의 핵산 단편을 의미하며 라벨링되어 있어서 특정 mRNA의 존재 유무, 발현양을 확인할 수 있다. 프로브는 올리고뉴클레오타이드(oligonucleotide) 프로브, 단쇄 DNA(single strand DNA) 프로브, 이중쇄DNA(double strand DNA)프로브, RNA 프로브 등의 형태로 제작될 수 있다. 적절한 프로브의 선택 및 혼성화 조건은 당해 기술 분야에 공지된 기술에 따라 적절히 선택할 수 있다.As used herein, the term "probe" refers to a nucleic acid fragment such as RNA or DNA corresponding to several bases to several hundred bases in length that can be specifically bound to mRNA, and is labeled to determine the presence or absence of a specific mRNA, expression quantity can be checked. The probe may be manufactured in the form of an oligonucleotide probe, a single-stranded DNA probe, a double-stranded DNA probe, an RNA probe, or the like. Suitable probe selection and hybridization conditions can be appropriately selected according to techniques known in the art.

또한, 본 발명은 (1) 환자에서 분리된 시료로부터 miR-4661-5p 및 miR-4746-5p 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정하는 단계; (2) 상기 측정된 miRNA의 발현수준을 대조군 시료와 비교하는 단계; 및 (3) 상기 측정된 miRNA의 발현수준이 대조군 시료보다 높을 경우 간암으로 판단하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공한다.In addition, the present invention comprises the steps of (1) measuring the expression level of any one or more miRNAs selected from miR-4661-5p and miR-4746-5p from a sample isolated from a patient; (2) comparing the measured expression level of miRNA with a control sample; And (3) when the measured expression level of the miRNA is higher than that of the control sample, it provides a method of providing information necessary for diagnosing liver cancer, comprising the step of determining that it is liver cancer.

상세하게는, (1) 단계는 miR-25-3p 및 miR-1269a 중에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정하는 단계를 추가적으로 포함할 수 있다.Specifically, step (1) may further include measuring the expression level of any one or more miRNAs selected from miR-25-3p and miR-1269a.

바람직하게는, 상기 간암은 조기 간암일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the liver cancer may be early liver cancer, but is not limited thereto.

상세하게는, 상기 miRNA의 발현수준을 측정하는 방법은 RT-PCR, 경쟁적 RT-PCR(Competitive RT-PCR), 실시간 RT-PCR (Real-time RT-PCR), RNase 보호 분석법(RPA; RNase protection assay), 노던 블랏팅 (Northern blotting), DNA 칩, 웨스턴 블랏, ELISA(enzyme linked immunosorbent asay), 방사선면역분석(Radioimmunoassay; RIA), 방사면역확산법(radioimmunodiffusion), 오우크테로니(Ouchterlony) 면역 확산법, 로케이트(rocket) 면역전기영동, 조직면역염색, 면역침전 분석법(Immunoprecipitation assay), 보체고정분석법 (Complement Fixation Assay), FACS 또는 단백질 칩을 이용할 수 있지만, 이에 한정되는 것은 아니다.Specifically, the method for measuring the expression level of the miRNA is RT-PCR, competitive RT-PCR (Competitive RT-PCR), real-time RT-PCR (Real-time RT-PCR), RNase protection assay (RPA; RNase protection) assay), Northern blotting, DNA chip, Western blot, ELISA (enzyme linked immunosorbent asay), Radioimmunoassay (RIA), radioimmunodiffusion, Ouchterlony immunodiffusion method , Rocket immunoelectrophoresis, tissue immunostaining, Immunoprecipitation assay, Complement Fixation Assay, FACS or protein chip may be used, but are not limited thereto.

본 명세서에서 용어 "환자에서 분리된 시료"란 환자의 간암 진단용 바이오마커인 상기 miRNA의 발현 수준에 있어서 대조군과 차이가 나는 조직, 세포, 전혈, 혈청, 혈장, 타액, 객담, 뇌척수액, 또는 뇨와 같은 시료를 포함하지만, 이에 한정되는 것은 아니다. 본 발명에서, 바람직하게는 상기 시료는 혈액일 수 있고, 보다 바람직하게는 상기 시료는 혈액 유래 엑소좀일 수 있다.As used herein, the term "sample isolated from a patient" refers to a tissue, cell, whole blood, serum, plasma, saliva, sputum, cerebrospinal fluid, or urine that is different from the control group in the expression level of the miRNA, which is a biomarker for diagnosing liver cancer in a patient. The same sample includes, but is not limited to. In the present invention, preferably, the sample may be blood, and more preferably, the sample may be a blood-derived exosome.

이하에서는, 본 발명을 한정하지 않는 실시예에 따라 본 발명을 상세히 설명한다. 본 발명의 하기 실시예는 본 발명을 구체화하기 위한 것일 뿐 본 발명의 권리범위를 제한하거나 한정하는 것이 아님은 물론이다. 따라서, 본 발명의 상세한 설명 및 실시예로부터 본 발명이 속하는 기술분야의 전문가가 용이하게 유추할 수 있는 것은 본 발명의 권리범위에 속하는 것으로 해석된다. Hereinafter, the present invention will be described in detail according to non-limiting examples. Of course, the following examples of the present invention are not intended to limit or limit the scope of the present invention only to embody the present invention. Accordingly, what can be easily inferred by an expert in the technical field to which the present invention pertains from the detailed description and examples of the present invention is construed as belonging to the scope of the present invention.

<실험예><Experimental example>

하기의 실험예들은 본 발명에 따른 각각의 실시예에 공통적으로 적용되는 실험예를 제공하기 위한 것이다.The following experimental examples are intended to provide experimental examples commonly applied to each embodiment according to the present invention.

1. One. 엑소좀exosomes 분리 및 검증 Separation and verification

(1) 간암 세포, 정상 간세포, 간 성상세포 세포 배양액에서 각각의 엑소좀을 정제/분리 (1) Purification/isolation of each exosome from liver cancer cells, normal hepatocytes, and hepatic stellate cell cultures

초원심분리를 이용한 엑소좀의 분리: 각각의 간암 세포주 배양액을 300g에서 10분간 원심분리하여 세포 찌거기(cell debris)를 제거하고, 3000g에서 20분간 원심분리하여 세포사멸체(apoptotic body)를 제거하였다. 100,000g에서 70분간 초원심분리하여, 엑소좀 분획(fraction)을 분리하였다. 0.2 μm pore 필터를 이용하여 ultrafiltration을 통해 D-PBS 배지에 부유시킨 엑소좀을 250 μl 로 농축시켰다.Isolation of exosomes using ultracentrifugation: Each liver cancer cell line culture medium was centrifuged at 300 g for 10 minutes to remove cell debris, and centrifuged at 3000 g for 20 minutes to remove apoptotic bodies. . The exosome fraction was separated by ultracentrifugation at 100,000 g for 70 minutes. Exosomes suspended in D-PBS medium through ultrafiltration using a 0.2 μm pore filter were concentrated to 250 μl.

Optiprep density gradient centrifugation을 이용한 엑소좀의 정제: 상기에서 획득한 엑소좀을 더욱 정제하기 위해 sucrose gradient를 시행하였다. sucrose buffer와 60% Optiprep gradient media (Sigma-Aldrich)를 희석해, 40%, 20%, 10%, 5% 용액을 제조하고 원심분리 튜브에 차례로 layering하고, 상기에서 초원심분리로 추출한 엑소좀을 로딩하였다. 100,000g에서 18시간 초원심분리하고 40%와 20% 사이에 위치한 엑소좀을 수집하였다(도 1).Purification of exosomes using Optiprep density gradient centrifugation: A sucrose gradient was performed to further purify the exosomes obtained above. Dilute sucrose buffer and 60% Optiprep gradient media (Sigma-Aldrich) to prepare 40%, 20%, 10%, and 5% solutions, layered in a centrifuge tube sequentially, and extract the exosomes from the above by ultracentrifugation. loaded. After ultracentrifugation at 100,000 g for 18 hours, exosomes located between 40% and 20% were collected (Fig. 1).

(2) 환자 혈청에서의 엑소좀 분리 및 RNA 추출(2) Exosome isolation and RNA extraction from patient serum

정상 및 간암 환자 혈청은 300ul를 사용하고 Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1))로 추출하였다. Normal and liver cancer patient sera were extracted with 300ul using Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1)).

환자 혈청 300ul에 ExoQuick™ 72ul를 넣고 혼합(Vortex) 해준 후, 4℃에 하루 정도 보관한 후, 환자 혈청 300ul에 ExoQuick™ 넣어둔 샘플을 13,000rpm, 4℃, 2분 동안 원심분리하였다.After putting 72ul of ExoQuick™ in 300ul of patient serum and mixing (Vortex), it was stored at 4℃ for about one day, and then the sample placed ExoQuick™ in 300ul of patient serum was centrifuged at 13,000rpm, 4℃, for 2 minutes.

생성된 펠렛(Pellet)만 남기고 상층액은 모두 제거 후 PBS(1×) (Hyclone™) 100ul로 펠렛을 녹인 후 Lysis buffer 300ul 와 100% EtOH 200ul를 첨가 후 혼합(Vortex)를 10초간 진행하였다.After removing all of the supernatant except for the generated pellet, 100ul of PBS (1×) (Hyclone™) was dissolved in the pellet, 300ul of Lysis buffer and 200ul of 100% EtOH were added, followed by mixing (Vortex) for 10 seconds.

Spin Column과 Collection Tube를 준비하여 샘플 전량을(600ul)을 Column에 옮겨 준 후 13,000rpm, 4℃, 1분간 원심분리하여, Collection Tube에 내려온 용액을 제거 후 Wash Buffer 400ul를 넣어 주고, 13,000rpm, 4℃, 1분간 원심분리 및 Collection Tube에 내려온 용액을 제거 후 반복 작업 후 13,000rpm, 4℃, 2분간 원심분리 진행 후 최종 건조시켰다.Prepare the Spin Column and Collection Tube, transfer the entire amount of sample (600ul) to the column, centrifuge at 13,000rpm, 4℃, for 1 minute, remove the solution that came down to the Collection Tube, and then put 400ul of Wash Buffer, 13,000rpm, After centrifugation at 4° C. for 1 minute, and after removing the solution that came down to the Collection Tube, the process was repeated and centrifuged at 13,000 rpm, 4° C. for 2 minutes, followed by final drying.

Elution buffer 30ul를 첨가하여 2,000rpm, 4℃, 2분간 원심분리 후, 13,000rpm, 4℃, 1분간 최종 원심분리하였다. 수득한 용액으로 Nano Drop으로 농도 측정하였다.Elution buffer 30ul was added and centrifuged at 2,000 rpm, 4°C, 2 minutes, followed by final centrifugation at 13,000 rpm, 4°C, 1 minute. The concentration of the obtained solution was measured by Nano Drop.

2. 간질환 병기별 2. Liver disease stage miRNomemiRNome 데이터로부터 간암 특이적 From the data, liver cancer specific miRNAmiRNA 마커marker 스크리닝 screening

모든 암종은 수년 혹은 수십 년 동안 여러 유전자들의 조절 이상이 축적됨으로서 다양한 전암병변(precancerous lesion) 단계를 거처 비로소 암이 된다는 사실을 근거하여 정상간, 만성간염, 간경화, 조기간암, 간암인 총 88명의 환자에서 조직을 수집하여 시퀀싱을 진행하였다. 정상 대조군에 비하여 간염 및 간경화에서는 유의하게 발현이 차이 나지 않으나, 조기 간암 및 진행성 간암에서만 특이적으로 발현이 증가되는 유전자들을 선별하였다. 공공오믹스 데이터 중 하나인 GSE76903 데이터와 병합하여 공통 miRNA을 선별하였을 때 약 71개의 miRNA가 선별되었고, 이를 TCGA 간암 코호트와 비교하여 비간암군 대비 간암군에서의 AUC가 0.7이상으로 판명된 총 26개의 miRNA를 선별하였다.Based on the fact that all carcinomas become cancers only through various precancerous lesion stages as a result of the accumulation of dysregulation of various genes for years or decades, a total of 88 patients with normal liver, chronic hepatitis, cirrhosis, early-stage cancer, and liver cancer Tissues were collected from the patient and sequencing was performed. Genes whose expression was not significantly different in hepatitis and cirrhosis compared to the normal control group, but whose expression was specifically increased only in early liver cancer and advanced liver cancer were selected. When common miRNAs were selected by merging with the GSE76903 data, one of the public omics data, about 71 miRNAs were selected, and compared with the TCGA liver cancer cohort, AUC in the liver cancer group compared to the non-liver cancer group was found to be 0.7 or higher. miRNAs were selected.

3. 공공 3. Public 오믹스omics 데이터를 이용하여 검증 진행한 Validated using data 엑소좀exosomes microRNAmicroRNA 후보 선정 Candidate selection

간암 엑소좀에서 과발현되는 microRNA의 간암 시료 발현량 및 예후와의 연관성을 TCGA data 세트에서 분석하여, 간암 시료에서 유의하게 과발현되고 예후와의 연관성을 보이는 microRNA를 선정하여 실제 간질환 환자 코호트에서 검증 진행하였다.The association of microRNA overexpressed in liver cancer exosomes with the expression level and prognosis of liver cancer samples was analyzed from the TCGA data set, and microRNAs that were significantly overexpressed in liver cancer samples and showed correlation with prognosis were selected and verified in the actual liver disease patient cohort. did.

4. 검증용 간질환 4. Liver disease for verification 코호트cohort 혈액 및 임상정보 수집 Blood and clinical information collection

아주대학교병원에서 IRB 심사를 통과 후, 인체자원은행을 통해 간질환 코호트 178명 (정상 28명, 만성 간염 27명, 간경변 33명, 간암 99명)의 혈청 및 임상정보를 분양받아 연구를 진행하였다.After passing the IRB review at Ajou University Hospital, the study was conducted by receiving the serum and clinical information of 178 liver disease cohorts (28 normal, 27 chronic hepatitis, 33 cirrhosis, 99 liver cancer) through the Human Resources Bank. .

5. 5. qPCRqPCR 분석을 통하여 간질환 Liver disease through analysis 코호트cohort 환자 혈청 patient serum 엑소좀에서in exosomes microRNA의microRNA 발현량 측정 Expression level measurement

miRNA 발현을 측정하기 위하여 환자 혈청은 300ul 사용하였고, Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1))(SBI, System Biosciences)를 사용하였다. miScript RT Ⅱ kit (Cat #218161)(QIAGEN)를 사용하여 cDNA 합성을 진행하였다.To measure miRNA expression, 300ul of patient serum was used, and an Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1)) (SBI, System Biosciences) was used. cDNA synthesis was performed using the miScript RT II kit (Cat #218161) (QIAGEN).

Exosome RNA와 RNA Free Water (RFW)를 합하여 12ul에 맞추고, miScript RT Ⅱ Buffer를 8ul (5× miScript Hiflex buffer는 4ul, 10× miScript Nucleics Mix는 2ul, miScript Reverse TranScriptase Mix는 2ul) 총 20ul로 cDNA 합성을 진행하였다. 합성된 cDNA는 1/20 희석하여 사용하였다.Combine Exosome RNA and RNA Free Water (RFW) to 12ul, add miScript RT Ⅱ Buffer to 8ul (5× miScript Hiflex buffer 4ul, 10× miScript Nucleics Mix 2ul, miScript Reverse TranScriptase Mix 2ul) to synthesize cDNA with a total of 20ul proceeded. The synthesized cDNA was diluted 1/20 and used.

cDNA 조건은 아래와 같이 설정하였다.cDNA conditions were set as follows.

A. Stage 1 : 37℃, 60분A. Stage 1: 37℃, 60 minutes

B. Stage 2 : 95℃, 5분 후 10℃, -ingB. Stage 2: 95℃, 10℃ after 5 minutes, -ing

GeneGene Accession No.Accession No. Mature sequencemature sequence Primer sequencePrimer sequence hsahsa -- miRmiR -25-3p-25-3p MIMAT0000081MIMAT00000081 5'-CAUUGCACUUGUCUCGGUCUGA-3'5'-CAUUGCACUUGUCUCCGGUCUGA-3' 5'-CATTGCACTTGTCTCGGTCTGA-3'5'-CATTGCACTTGTCTCGGTCTGA-3' hsahsa -- miRmiR -140-3p-140-3p MIMAT0004597MIMAT0004597 5'-UACCACAGGGUAGAACCACGG-3'5'-UACCACAGGGUAGAACCACGG-3' 5'-TACCACAGGGTAGAACCACGG-3'5'-TACCACAGGGTAGAACCACGG-3' hsahsa -- miRmiR -423-3p-423-3p MIMAT0001340MIMAT0001340 5'-AGCUCGGUCUGAGGCCCCUCAGU-3'5'-AGCUCGGUCUGAGGCCCCCUCAGU-3' 5'-AGCTCGGTCTGAGGCCCCTCAGT-3'5'-AGCTCGGTCTGAGGCCCCTCAGT-3' hsahsa -- miRmiR -1269a-1269a MIMAT0005923MIMAT0005923 5'-CUGGACUGAGCCGUGCUACUGG-3'5'-CUGGACUGAGCCGUGCUACUGG-3' 5'-CTGGACTGAGCCGTGCTACTGG-3'5'-CTGGACTGAGCCGTGCTACTGG-3' hsahsa -- miRmiR -4661-5p-4661-5p MIMAT0019729MIMAT0019729 5'-AACUAGCUCUGUGGAUCCUGAC-3'5'-AACUAGCUCUGUGGAUCCUGAC-3' 5'-AACTAGCTCTGTGGATCCTGAC-3'5'-AACTAGCTCTGTGGATCCTGAC-3' hsahsa -- miRmiR -4746-5p-4746-5p MIMAT0019880MIMAT0019880 5'-CCGGUCCCAGGAGAACCUGCAGA-3'5'-CCGGUCCCAGGAGAACCUGCAGA-3' 5'-CCGGTCCCAGGAGAACCTGCAGA-3'5'-CCGGTCCCAGGAGAACCTGCAGA-3' hsahsa -- miRmiR -1228-3p-1228-3p MIMAT0005583MIMAT0005583 5'-UCACACCUGCCUCGCCCCCC-3'5'-UCACACCUGCCUCGCCCCCC-3' 5'-TCACACCTGCCTCGCCCCCC-3'5'-TCACACCTGCCTCGCCCCCC-3'

상기 표 1의 서열을 가진 프라이머를 사용하여 PCR을 수행하였다. 이때 필요한 프라이머(primer)는 M.biotech (Hanam, Korea)에서 구입하여 사용하였다. qPCR MasterMix (2X, High ROX) (Gendepot, Cat #Q5602)는 5ul 사용하여 총 10ul로 qRT-PCR 진행하였다.PCR was performed using the primers having the sequence of Table 1. In this case, the necessary primers were purchased from M.biotech (Hanam, Korea) and used. qPCR MasterMix (2X, High ROX) (Gendepot, Cat #Q5602) was used for qRT-PCR with a total of 10ul using 5ul.

qRT-PCR 조건은 아래와 같이 설정하였다.qRT-PCR conditions were set as follows.

A. Stage 1 : 95℃에서 2분A. Stage 1: 2 minutes at 95℃

B. Stage 2 : 95℃에서 15초, 58~60℃에서 34초 (miRNA별 상이), 72℃에서 30초B. Stage 2: 15 seconds at 95°C, 34 seconds at 58-60°C (different by miRNA), 30 seconds at 72°C

C. Stage 2를 40 cycle 반복C. Repeat Stage 2 for 40 cycles

6. 6. 엑소좀exosomes microRNAmicroRNA 결과의 통계 분석 Statistical analysis of results

Microsoft Office Excel 프로그램을 사용하여 혈청의 상대적인 농도를 계산한 후, 통계 분석은 MedCalc statistical software 및 SPSS v22 분석 프로그램을 이용하여 분석 진행하였다.After calculating the relative concentration of serum using Microsoft Office Excel program, statistical analysis was performed using MedCalc statistical software and SPSS v22 analysis program.

<< 실시예Example 1> 혈청 1> Serum 엑소좀exosomes 조기 간암 early liver cancer miRNAmiRNA 마커marker 동정을 위한 환자 patient for sympathy 코호트cohort 선별 Selection

총 250 환자가 본 발명에 사용되었다. 우선 간암 exo-miRNA 마커 후보를 도출하기 위하여 공공 오믹스 데이터인 GSE76903과 TCGA LIHC를 함께 사용하였고 ROC 분석을 통해 최종 후보를 선별하고자 하였다. 후보물질을 동정하기 위해서 본 발명에 사용된 코호트 1은 86명의 환자로부터 108개의 샘플을 얻어 NGS RNA-seq을 진행하였으며 15 NL, 20 CH, 10 LC, 18 eHCC (High grade dysplastic nodules and Edmoson grade TG1), 45 avHCC (Edmoson grade TG2 and TG3)으로 선별하였다. 이로부터 총 6개의 간암 드라이버 miRNA가 선정되었으며, 이를 아주대학교병원 24명의 환자 혈액 코호트로 qRT-PCR로 테스트를 시행하였다. 혈액 샘플에서는 modified UICC를 기준으로 간암 병기를 적용함. 테스트로 선별된 최종 4개의 miRNA에 대하여 144명의 검증코호트에서 qRT-PCR 시행하였다(도 2).A total of 250 patients were used in the present invention. First, GSE76903 and TCGA LIHC, which are public omics data, were used together to derive a candidate liver cancer exo-miRNA marker, and final candidates were selected through ROC analysis. Cohort 1 used in the present invention to identify candidate substances was performed with NGS RNA-seq by obtaining 108 samples from 86 patients. 15 NL, 20 CH, 10 LC, 18 eHCC (High grade dysplastic nodules and Edmoson grade TG1) ), 45 avHCC (Edmoson grade TG2 and TG3). A total of 6 liver cancer driver miRNAs were selected from this, and they were tested by qRT-PCR in a blood cohort of 24 patients at Ajou University Hospital. For blood samples, liver cancer staging was applied based on the modified UICC. qRT-PCR was performed in a validation cohort of 144 people for the last 4 miRNAs selected for the test (FIG. 2).

<< 실시예Example 2> 조기 간암 판별 혈청 2> Early liver cancer detection serum exoexo -- miRNAmiRNA 선별을 위한 통합 유전체 분석 Integrated genomic analysis for screening

코호트1인 108명의 샘플로 구성된 조직 시퀀싱 데이터로부터 발현 프로파일링(expression profiling)을 진행한 후, HCC 특이 gene signature를 도출하였다. 이를 ROC 분석을 통해 한번 더 추린 후 최종적으로 TCGA 생존분석을 통하여 선별하고자 하였다.After expression profiling was performed from tissue sequencing data consisting of 108 samples of cohort 1, an HCC-specific gene signature was derived. After extracting it once more through ROC analysis, it was finally selected through TCGA survival analysis.

정상군에 비하여 각 간질환 병기에서 통계적으로 유의하게 과발현된 miRNA(Up-regulated DEGs : welch’s t-test p<0.05 & >=1.3 fold)를 선별하여 벤다이어그램으로 나타냈다. 간염 (CH)이나 간경화 (LC)를 제외하고 조기간암 (eHCC)와 진행성간암 (avHCC)에서 과발현된 총 140개의 miRNA를 찾아냈다.Compared to the normal group, statistically significantly overexpressed miRNAs (Up-regulated DEGs: welch's t-test p<0.05 & >=1.3 fold) in each liver disease stage were selected and presented as a Venn diagram. We found a total of 140 miRNAs overexpressed in early-stage cancer (eHCC) and advanced liver cancer (avHCC), excluding hepatitis (CH) and cirrhosis (LC).

코호트 1 Catholic LIHC와 칭화대학교 RNA-seq data (Tsinghua LIHC, GSE76903)를 통합분석하여 Tsinghua LIHC 데이터에서 간암 특이 과발현된 305 miRNA (welch’s t-test p<0.05 & >=1.5 fold)와 비교하여 공통적으로 포함되는 총 71개의 miRNA를 찾아냈다.Cohort 1 Catholic LIHC and Tsinghua University RNA-seq data (Tsinghua LIHC, GSE76903) were integrated and compared with 305 miRNA (welch's t-test p<0.05 & >=1.5 fold) overexpressed in liver cancer specific from Tsinghua LIHC data. A total of 71 miRNAs were identified.

71개 공통적으로 과발현된 miRNA들을 3개 간암 코호트 (Catholic LIHC, Tsinghua LIHC, TCGA LIHC)에서 heatmap으로 나타냈을 때 간암에서 뚜렷이 과발현 되어있음을 확인할 수 있었다.When 71 commonly overexpressed miRNAs were shown as heatmaps in 3 liver cancer cohorts (Catholic LIHC, Tsinghua LIHC, TCGA LIHC), it was confirmed that they were clearly overexpressed in liver cancer.

선별된 miRNA들이 비간암과 간암을 정확히 구분지을 수 있는지에 대한 평가로 ROC분석을 시행하고 AUC가 0.7이상인 miRNA들을 최종 선별하였다. Catholic LIHC에서 62개 miRNA, Tsinghua LIHC에서 67개 miRNA, TCGA LIHC에서는 32개 miRNA가 선별되었다. 이 중 조기간암에서 유의하게 발현되고 간암 환자의 생존과 연관된 최종 6개 miRNA를 선별하였다(도 3).ROC analysis was performed to evaluate whether the selected miRNAs can accurately discriminate between non-liver cancer and liver cancer, and miRNAs with an AUC of 0.7 or higher were finally selected. 62 miRNAs were selected from Catholic LIHC, 67 miRNAs from Tsinghua LIHC, and 32 miRNAs from TCGA LIHC. Among them, the final six miRNAs that were significantly expressed in early-stage cancer and were associated with the survival of liver cancer patients were selected (FIG. 3).

<< 실시예Example 3> 후보 6개 3> 6 candidates exoexo -- miRNA의miRNA 테스트 및 검증 Testing and Validation 코호트에서의in the cohort 진단력diagnostic power 평가 evaluation

6개의 후보 microRNA가 실제 환자에서 과발현되어 있는지를 확인하기 위해 정상간(n=4), 만성간염(n=4), 간경화(n=4), mUICC I/II(n=6), mUICC III/IV(n=6) 환자 혈청 엑소좀에서 Quantitative real-time PCR로 miRNA 발현 확인하였다. 비간암(NL,CH,LC)에 비해 간암환자 혈청 엑소좀에서 4개 miRNA (miR-25-3p, miR-1269a, miR-4661-5p, miR-4746-5p)의 통계적으로 유의하게 발현이 증가됨을 확인하였다(Welch’s t-test, **P<0.01, ***P<0.001).To determine whether six candidate microRNAs were overexpressed in actual patients, normal liver (n=4), chronic hepatitis (n=4), cirrhosis (n=4), mUICC I/II (n=6), mUICC III miRNA expression was confirmed by quantitative real-time PCR in exosomes from /IV (n=6) patient serum. The expression of 4 miRNAs (miR-25-3p, miR-1269a, miR-4661-5p, miR-4746-5p) in the serum exosomes of liver cancer patients was significantly higher than that of non-liver cancer (NL, CH, LC). It was confirmed that increased (Welch's t-test, **P<0.01, ***P<0.001).

6개의 exo-miRNA 후보 간암 진단의 AUC를 확인하였을 때, 4개 miRNA (miR-25-3p, miR-1269a, miR-4661-5p, miR-4746-5p)가 AUC 0.8 이상의 좋은 결과를 보였다. 따라서 총 4개의 microRNA에 대해 140명의 검증 코호트에서 검증을 진행하기로 하였다.When the AUC of 6 exo-miRNA candidate liver cancer diagnosis was confirmed, 4 miRNAs (miR-25-3p, miR-1269a, miR-4661-5p, miR-4746-5p) showed good results of AUC 0.8 or higher. Therefore, it was decided to proceed with validation in a validation cohort of 140 people for a total of 4 microRNAs.

전체 140명의 코호트에서 발굴한 혈청 엑소좀 microRNA 후보들의 발현량을 검증하였다(Welch’s t-test, *P<0.05, **P<0.01, ***P<0.001).The expression levels of serum exosome microRNA candidates discovered in a total of 140 cohorts were verified (Welch's t-test, *P<0.05, **P<0.01, ***P<0.001).

간암 진단에 있어 혈청 엑소좀 miR-25-3p는 간암 진단의 AUC가 0.758 (95% CI: 0.679-0.827), miR-1269a는 AUC가 0.844 (95% CI: 0.773-0.900), miR-4661-5p는 AUC=0.918 (95% CI: 0.860-0.958), miR-4746-5p는 AUC=0.687(95% CI: 0.542-0.707)로 4개 혈청 엑소좀 miRNA 중 miR-4661-5p가 가장 높은 AUC를 보였다(도 4).For liver cancer diagnosis, serum exosome miR-25-3p had an AUC of 0.758 (95% CI: 0.679-0.827), miR-1269a had an AUC of 0.844 (95% CI: 0.773-0.900), miR-4661- 5p is AUC=0.918 (95% CI: 0.860-0.958), miR-4746-5p is AUC=0.687 (95% CI: 0.542-0.707), so miR-4661-5p has the highest AUC among the four serum exosomal miRNAs. was shown (Fig. 4).

<< 실시예Example 4> 4> 엑소좀exosomes microRNAmicroRNA 패널의 조기 간암 panel of early liver cancer 마커로서의as a marker 검증 결과 Verification result

전체 코호트의 구성은 아래 표 2와 같다.The composition of the entire cohort is shown in Table 2 below.

Figure pat00001
Figure pat00001

검증 코호트에서의 후보 microRNA 임상적 유의성 검증하였다. 전체 168명의 코호트에서 조기 간암 판별 여부를 판단하기 위하여 mUICC 병기를 나누어 AUC를 측정하였다(도 5).Candidate microRNAs in the validation cohort were validated for clinical significance. AUC was measured by dividing the mUICC stage to determine whether early liver cancer was discriminated in a cohort of a total of 168 patients (FIG. 5).

간암 진단을 위한 혈청 AFP와 엑소좀 miRNA의 패널 조합을 통하여 기존 간암 혈청 마커인 AFP를 보완하거나 개선할 수 있는 마커의 패널을 찾기 위해 패널 조합별 AUC를 측정하였다(표 3).Through the panel combination of serum AFP and exosome miRNA for liver cancer diagnosis, AUC for each panel combination was measured to find a panel of markers that can complement or improve AFP, the existing liver cancer serum marker (Table 3).


 

 
N,CHB,LC vs HCCN,CHB,LC vs HCC
AUCAUC 95% CI95% CI AFPAFP 0.7040.704 0.625-0.7820.625-0.782 AFP+miR-25AFP+miR-25 0.7900.790 0.723-0.8570.723-0.857 AFP+miR-1269aAFP+miR-1269a 0.8720.872 0.820-0.9240.820-0.924 AFP+miR-4661AFP+miR-4661 0.9210.921 0.883-0.9590.883-0.959 AFP+miR-4746AFP+miR-4746 0.7410.741 0.665-0.8170.665-0.817 miR-25+miR-1269amiR-25+miR-1269a 0.8500.850 0.793-0.9070.793-0.907 miR-25+miR-4661miR-25+miR-4661 0.9190.919 0.880-0.9570.880-0.957 miR-25+miR-4746miR-25+miR-4746 0.7900.790 0.720-0.8600.720-0.860 miR-1269a+miR-4661miR-1269a+miR-4661 0.9180.918 0.879-0.9560.879-0.956 miR-1269a+miR-4746miR-1269a+miR-4746 0.8740.874 0.821-0.9270.821-0.927 miR-4661+miR-4746miR-4661+miR-4746 0.9420.942 0.908-0.9750.908-0.975

전체 간암 코호트에서의 간암 진단에 있어서는 AFP와의 조합이 가장 좋은 것은 AFP+miR-4661-5p의 AUC가 0.921로 가장 좋았으나 2가지 조합 전체에서는 miR-4661-5p+miR-4746-5p의 AUC가 0.942로 가장 좋은 것으로 나타났다.For the diagnosis of liver cancer in the entire liver cancer cohort, the best combination with AFP had the best AUC of AFP+miR-4661-5p of 0.921. 0.942 was found to be the best.

따라서 2개의 조합에 대해 조기 간암 판별 분석을 시행하였다. 패널을 구성한 것 중에서 miR-4661-5p와 miR-4746-5p의 조합으로 ROC분석을 하였을 때, 모든 경우에서 0.9 이상의 우수한 진단력을 보이는 것으로 확인되었다(도 6).Therefore, early liver cancer discrimination analysis was performed for the two combinations. When ROC analysis was performed with a combination of miR-4661-5p and miR-4746-5p among those constituting the panel, it was confirmed that excellent diagnostic power of 0.9 or more was shown in all cases ( FIG. 6 ).

결론적으로, 본 발명은 간암 엑소좀에서 과발현된 microRNA를 이용한 간암 진단력에 관한 것으로 소량의 혈액만으로도 상당히 우수한 민감도와 특이도를 나타내어 조기 간암의 정확한 진단이 가능한 바, 진단의 정확성, 간편성, 그리고 경제성에 효과가 있다고 할 수 있다. In conclusion, the present invention relates to the diagnostic power of liver cancer using microRNA overexpressed in liver cancer exosomes, which shows very good sensitivity and specificity with only a small amount of blood, enabling accurate diagnosis of early liver cancer, accuracy, simplicity, and economy of diagnosis can be said to be effective for

본 발명은 간암 세포 엑소좀에서 과발현되는 microRNA를 발굴하고, 이를 1차로 공공 오믹스 데이터에서 검증하여 후보를 선별하였으며, 선별된 후보의 임상적 유효성을 독립적인 간질환 코호트에서 검증하여 우수한 진단적 정확도를 확인하였다. The present invention discovered microRNAs overexpressed in exosomes of liver cancer cells, first verified them in public omics data, selected candidates, and verified the clinical effectiveness of the selected candidates in an independent liver disease cohort, thereby providing excellent diagnostic accuracy was confirmed.

초음파를 이용한 조기 간암의 발견율이 60-80%로 기대에 미치지 못하고, 혈청 바이오마커로 알려진 AFP 또한 조기 간암에서의 역할이 미미한 상황에서, 본 발명은 소량의 혈액을 이용하여 놀라운 간암 진단 정확도를 보이고 있어, 향후 간암 고위험군 선별 검사에 있어 본 발명이 혁신적 역할을 할 것으로 예상된다.In a situation in which the detection rate of early liver cancer using ultrasound is 60-80%, which does not meet expectations, and AFP, also known as a serum biomarker, plays an insignificant role in early liver cancer, the present invention shows surprising liver cancer diagnosis accuracy using a small amount of blood. Therefore, it is expected that the present invention will play an innovative role in screening for high-risk groups of liver cancer in the future.

<110> AJOU UNIVERSITY INDUSTRY-ACADEMIC COOPERATION FOUNDATION <120> Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p <130> ADP-2021-0408 <160> 4 <170> KopatentIn 2.0 <210> 1 <211> 22 <212> RNA <213> Homo sapiens <400> 1 aacuagcucu guggauccug ac 22 <210> 2 <211> 23 <212> RNA <213> Homo sapiens <400> 2 ccggucccag gagaaccugc aga 23 <210> 3 <211> 22 <212> RNA <213> Homo sapiens <400> 3 cauugcacuu gucucggucu ga 22 <210> 4 <211> 22 <212> RNA <213> Homo sapiens <400> 4 cuggacugag ccgugcuacu gg 22 <110> AJOU UNIVERSITY INDUSTRY-ACADEMIC COOPERATION FOUNDATION <120> Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p <130> ADP-2021-0408 <160> 4 <170> KopatentIn 2.0 <210> 1 <211> 22 <212> RNA <213> Homo sapiens <400> 1 aacuagcucu guggauccug ac 22 <210> 2 <211> 23 <212> RNA <213> Homo sapiens <400> 2 ccggucccag gagaaccugc aga 23 <210> 3 <211> 22 <212> RNA <213> Homo sapiens <400> 3 cauugcacuu gucucggucu ga 22 <210> 4 <211> 22 <212> RNA <213> Homo sapiens <400> 4 cuggacugag ccgugcuacu gg 22

Claims (4)

miR-4661-5p의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 키트.A kit for diagnosing liver cancer comprising a formulation capable of measuring the expression level of miR-4661-5p as an active ingredient. 제1항에 있어서, 상기 키트는 miR-4746-5p, miR-25-3p 및 miR-1269a로 이루어진 군에서 선택된 어느 하나 이상의 miRNA의 발현수준을 측정할 수 있는 제제를 추가적으로 포함하는 것을 특징으로 하는 간암 진단용 키트.The method of claim 1, wherein the kit further comprises an agent capable of measuring the expression level of any one or more miRNAs selected from the group consisting of miR-4746-5p, miR-25-3p and miR-1269a. Liver cancer diagnostic kit. 제1항 또는 제2항에 있어서, 상기 miRNA의 발현수준을 측정할 수 있는 제제는 상기 miRNA에 특이적으로 결합하는 프라이머 또는 프로브인 것을 특징으로 하는 간암 진단용 키트.The kit for diagnosing liver cancer according to claim 1 or 2, wherein the agent capable of measuring the expression level of miRNA is a primer or probe that specifically binds to the miRNA. 제1항 또는 제2항에 있어서, 상기 간암은 조기 간암인 것을 특징으로 하는 간암 진단용 키트. The kit for diagnosing liver cancer according to claim 1 or 2, wherein the liver cancer is early liver cancer.
KR1020210097595A 2019-10-31 2021-07-26 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p KR102317132B1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
KR1020210097595A KR102317132B1 (en) 2019-10-31 2021-07-26 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
KR1020190137870A KR102284575B1 (en) 2019-10-31 2019-10-31 Exosomal miRNA panel marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis
KR1020210097595A KR102317132B1 (en) 2019-10-31 2021-07-26 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
KR1020190137870A Division KR102284575B1 (en) 2019-10-31 2019-10-31 Exosomal miRNA panel marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis

Publications (2)

Publication Number Publication Date
KR20210095828A true KR20210095828A (en) 2021-08-03
KR102317132B1 KR102317132B1 (en) 2021-10-25

Family

ID=75917888

Family Applications (4)

Application Number Title Priority Date Filing Date
KR1020190137870A KR102284575B1 (en) 2019-10-31 2019-10-31 Exosomal miRNA panel marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis
KR1020210097595A KR102317132B1 (en) 2019-10-31 2021-07-26 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p
KR1020210097596A KR102317125B1 (en) 2019-10-31 2021-07-26 Method for diagnosing liver cancer by measuring expression level of miR-4661-5p
KR1020210097594A KR102317131B1 (en) 2019-10-31 2021-07-26 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p

Family Applications Before (1)

Application Number Title Priority Date Filing Date
KR1020190137870A KR102284575B1 (en) 2019-10-31 2019-10-31 Exosomal miRNA panel marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis

Family Applications After (2)

Application Number Title Priority Date Filing Date
KR1020210097596A KR102317125B1 (en) 2019-10-31 2021-07-26 Method for diagnosing liver cancer by measuring expression level of miR-4661-5p
KR1020210097594A KR102317131B1 (en) 2019-10-31 2021-07-26 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p

Country Status (1)

Country Link
KR (4) KR102284575B1 (en)

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20170018411A (en) * 2014-06-18 2017-02-17 도레이 카부시키가이샤 Liver cancer detection kit or device, and detection method
KR101987358B1 (en) 2016-09-13 2019-06-10 사회복지법인 삼성생명공익재단 Novel Biomarkers For Diagnosing Liver Cancer and Uses Thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20170018411A (en) * 2014-06-18 2017-02-17 도레이 카부시키가이샤 Liver cancer detection kit or device, and detection method
EP3159398A1 (en) * 2014-06-18 2017-04-26 Toray Industries, Inc. Liver cancer detection kit or device, and detection method
KR101987358B1 (en) 2016-09-13 2019-06-10 사회복지법인 삼성생명공익재단 Novel Biomarkers For Diagnosing Liver Cancer and Uses Thereof

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
Sci Rep, 6: 38311 (2016.12.05.) *

Also Published As

Publication number Publication date
KR102317125B1 (en) 2021-10-25
KR102317131B1 (en) 2021-10-25
KR102284575B1 (en) 2021-08-03
KR20210095827A (en) 2021-08-03
KR102317132B1 (en) 2021-10-25
KR20210051941A (en) 2021-05-10
KR20210095829A (en) 2021-08-03

Similar Documents

Publication Publication Date Title
JP2022163063A (en) Biomarkers of traumatic brain injury
KR20180029936A (en) Novel Biomarkers For Diagnosing Liver Cancer and Uses Thereof
KR102178922B1 (en) Biomarker microRNA let-7 or microRNA-150 for diagnosing diabetic nephropathy and use thereof
KR20200002241A (en) Biomarker microRNA-26b or microRNA-4449 for diagnosing obesity and use thereof
US20130323740A1 (en) Direct blood assay for detection of circulating microrna in cancer patients
CN110229899B (en) Plasma marker combinations for early diagnosis or prognosis prediction of colorectal cancer
Shoraka et al. Identification of plasma lncRNA-ATB levels in hepatitis B virus-related cirrhosis and non-cirrhotic chronic hepatitis B patients
KR102492149B1 (en) MicroRNA-1246 for diagnosing of ovarian cancer and use thereof
KR102241455B1 (en) microRNA biomarker derived exosome for diagnosis of early liver cancer and use thereof
KR102194215B1 (en) Biomarkers for Diagnosing Gastric Cancer And Uses Thereof
KR20190113094A (en) MicroRNA-4732-5p for diagnosing or predicting recurrence of colorectal cancer and use thereof
KR102178919B1 (en) Biomarker microRNAs for diagnosing diabetic nephropathy and use thereof
KR102317132B1 (en) Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p
KR102258096B1 (en) Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
WO2021191485A1 (en) Biomarkers for predicting a patient&#39;s response to bcg therapy, methods and uses based thereon
KR102096499B1 (en) MicroRNA-3960 for diagnosing or predicting recurrence of colorectal cancer and use thereof
KR20200084435A (en) Bio-marker for non-invasive differential diagnosis of acute rejection in kidney transplanted patients and uses thereof
KR20190113108A (en) MicroRNA-3656 for diagnosing or predicting recurrence of colorectal cancer and use thereof
CN115125304B (en) CERNA regulation network for early diagnosis or detection of non-small cell lung cancer and application thereof
KR20240039492A (en) Serum exosomal SF3B4 marker composition for diagnosing early stage hepatocellular carcinoma for noninvasive in vitro diagnosis
KR102347899B1 (en) Urinary exosome-derived biomarkers for diagnosis or prognosis of BK virus-associated nephropathy in kidney allografts
KR102110038B1 (en) Biomarker let-7a or let-7f for diagnosing obesity and use thereof
KR102131519B1 (en) Biomarker for diagnosing of liver cancer metastasis or predicting prognosis of the same and use thereof
KR20240058548A (en) Extracellular vesicles-derived miRNA gene biomarkders for diagnosis or prediction of recurrence of breast cancer and use thereof
KR20210042079A (en) Kit for diagnosis of early liver cancer

Legal Events

Date Code Title Description
A107 Divisional application of patent
E701 Decision to grant or registration of patent right
GRNT Written decision to grant