KR102106040B1 - Method for Detecting Target Nucleic Acid using Personal Glucose Meter - Google Patents

Method for Detecting Target Nucleic Acid using Personal Glucose Meter Download PDF

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KR102106040B1
KR102106040B1 KR1020180155255A KR20180155255A KR102106040B1 KR 102106040 B1 KR102106040 B1 KR 102106040B1 KR 1020180155255 A KR1020180155255 A KR 1020180155255A KR 20180155255 A KR20180155255 A KR 20180155255A KR 102106040 B1 KR102106040 B1 KR 102106040B1
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nucleic acid
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박현규
김효용
안준기
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한국과학기술원
재단법인 바이오나노헬스가드연구단
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Abstract

The present invention relates to a method for easily detecting target nucleic acids using a self-monitoring blood glucose meter. According to the present invention, the target nucleic acids of nucleic acid amplification products can be detected and quantified quickly and easily by using the self-monitoring blood glucose meter which is inexpensive and easy and simple to use.

Description

자가혈당측정기를 활용한 표적핵산 검출방법 {Method for Detecting Target Nucleic Acid using Personal Glucose Meter}Method of Detecting Target Nucleic Acid Using Personal Glucose Meter}

본 발명은 자가혈당측정기를 이용하여 표적핵산을 간편하게 검출하는 방법에 관한 것으로, 더욱 자세하게는 표적핵산의 증폭반응용액에 글루코오스와 dNTP 재생에 관여하는 효소를 함유하는 용액에 첨가하여, 증폭반응용액에 남아있는 dNTP에 의하여 글루코오스를 글루코오스-6-인산으로 전환한 후, 혈당측정기를 이용하여 글루코오스 농도를 측정하고, 표적핵산을 검출 또는 정량하는 것을 특징으로 하는 혈당측정기를 이용한 시료 내 표적핵산의 검출 또는 정량 방법에 관한 것이다. The present invention relates to a method for easily detecting a target nucleic acid using an autoglucometer, and more specifically, to a solution containing an enzyme involved in glucose and dNTP regeneration in an amplification reaction solution of the target nucleic acid, to the amplification reaction solution After the glucose is converted to glucose-6-phosphate by the remaining dNTP, the concentration of glucose is measured using a blood glucose meter, and the target nucleic acid is detected in a sample using a blood glucose meter, which is characterized by detecting or quantifying the target nucleic acid, or It relates to a quantitative method.

표적핵산 검출기술은 유전학(genetics), 임상 화학(clinical chemistry), 법의학(forensic) 및 진단학(diagnostics) 등의 다양한 기술 분야에서 그 중요성이 대두되고 있다. 이러한 기술분야에서 가장 대표적으로 사용되고 있는 표적핵산 검출방법은 PCR을 이용하여 표적핵산의 특정 염기서열 (sequence)을 증폭한 후, 전기영동을 통해 생성된 증폭 산물을 확인하는 것이다. 하지만, 이러한 전기영동 기반 PCR 분석 기술의 경우, 검출을 위해 많은 시간이 요구될 뿐만아니라, 전체 과정이 노동 집약적이라는 단점이 있다. 이러한 단점을 해결하기 위한 기술로서, PCR 반응을 실시간으로 검출하는 real-time PCR (이하 RT-PCR) 기술이 개발되어 왔다. RT-PCR 기술은 표적핵산 증폭반응의 실시간 검출뿐만 아니라, 표적핵산의 정량 검출을 가능하게 함으로써, 분자진단 (molecular diagnostics) 시장의 대표 기술로서 널리 활용되고 있다. 하지만, 이러한 장점에도 불구하고, 값비싼 시약 및 검출 장비가 필수적으로 요구되며, 검출 장비의 휴대성이 결여되기 때문에, 대형 병원 또는 전문 연구소 등의 환경에서만 제한적으로 사용 가능하다는 한계를 가지고 있다.Target nucleic acid detection technology is gaining importance in various technical fields such as genetics, clinical chemistry, forensic and diagnostics. The most representative target nucleic acid detection method used in this technical field is to amplify a specific sequence of a target nucleic acid using PCR, and then identify amplification products generated through electrophoresis. However, in the case of such an electrophoresis-based PCR analysis technique, not only a lot of time is required for detection, but also a disadvantage that the entire process is labor intensive. As a technique for solving these shortcomings, a real-time PCR (hereinafter RT-PCR) technique for detecting a PCR reaction in real time has been developed. RT-PCR technology has been widely used as a representative technology in the molecular diagnostics market by enabling real-time detection of target nucleic acid amplification reactions as well as quantitative detection of target nucleic acids. However, despite these advantages, expensive reagents and detection equipment are required, and since the portability of the detection equipment is lacking, there is a limitation that it can be used only in environments such as large hospitals or specialized research institutes.

한편, 자가혈당측정기 (personal glucose meter, PGM)는 전 세계적으로 가장 널리 보급되어 있는 현장형 체외진단 기기이며, 자가혈당측정기를 이용하여 포도당 이외의 표적물질을 검출하는 기술이 최근 보고된 바 있다 (미국특허 제8,945,943호). 상기 기술의 경우, 표적물질과 압타머(aptamer)의 결합에 의한 가닥변위(strand displacement) 반응 및 인버타아제(invertase) 활성을 이용한 포도당 생성 반응을 이용하여, 여러 표적 물질 (cocaine, adenosine, interferon-γ, 및 UO2 2+ 등)을 자가혈당측정기를 이용하여 간편하게 검출하였다. 하지만, 상기 기술의 구현을 위해서는 압타머 프로브 및 효소의 수식이 필요할 뿐만 아니라, 자성 입자 (magnetic bead)를 이용한 시료의 분리 과정이 요구되는 등, 전체 검출 과정이 복잡해진다는 단점이 있다.On the other hand, a personal glucose meter (PGM) is the most widely used field-based in vitro diagnostic device worldwide, and a technique for detecting a target substance other than glucose using an autoglucometer has recently been reported ( U.S. Patent No. 8,945,943). In the case of the above technique, several target substances (cocaine, adenosine, interferon) are produced by using a strand displacement reaction by binding of a target substance and an aptamer and a glucose production reaction using an invertase activity. -γ, and UO 2 2+, etc.) were easily detected using an auto-glucometer. However, the implementation of the above technique requires not only the modification of the aptamer probe and the enzyme, but also requires a separation process of the sample using magnetic particles (magnetic bead).

상기 언급된 기존 기술의 단점을 해결하기 위해, 본 발명자들은 자가혈당측정기를 활용한 adenosine 5'-triphosphate (이하 ATP) 검출기술을 개발한 바 있다 (한국특허공개: 10-2018-0107875). 구체적으로, 상기 기술의 경우, 용액 내에 ATP가 존재할 때 발생하는 인산화효소 연쇄반응에 의해 유도되는 포도당 농도 변화를, 상용화된 자가혈당측정기로 측정함으로써 ATP를 검출하는 기술에 관한 것이다. In order to solve the disadvantages of the above-mentioned existing technology, the present inventors have developed adenosine 5'-triphosphate (hereinafter ATP) detection technology utilizing an auto-glucose meter (Korean Patent Publication: 10-2018-0107875). Specifically, in the case of the above technique, it relates to a technique for detecting ATP by measuring a change in glucose concentration induced by a phosphatase chain reaction that occurs when ATP is present in a solution with a commercially available autoglucometer.

이에, 본 발명자들은 핵산 증폭산물에서 표적핵산을 보다 간편하게 검출 또는 정량하는 방법을 개발하고자 예의 노력한 결과, 본 발명자들의 시료에 표적핵산이 존재하는 경우, PCR반응이 일어나 증폭산물의 dNTP 농도가 낮아지는 것에 착안하여, PCR 반응산물에 글루코오스, 헥소카이네이즈(hexokinase) 및 피루베이트 카이네이즈(pyruvate kinase)를 첨가하여 반응시킨 후, 자가혈당측정기를 이용하여, 글루코오스 농도를 측정하는 경우, 시료의 표적핵산을 검출 또는 정량할 수 있다는 것을 확인하고, 본 발명을 완성하게 되었다. Thus, the present inventors tried to develop a method for more easily detecting or quantifying the target nucleic acid in the nucleic acid amplification product. As a result, when the target nucleic acid is present in the sample of the present inventors, a PCR reaction occurs and the dNTP concentration of the amplification product is lowered. With this in mind, glucose, hexokinase, and pyruvate kinase are added to the PCR reaction product to react, and then, when measuring glucose concentration using an auto-glucometer, the target nucleic acid of the sample is detected. Or it was confirmed that it can be quantified, and the present invention has been completed.

본 발명의 목적은 핵산 증폭산물에서 표적핵산을 보다 간편하게 검출 또는 정량하는 방법을 제공하는데 있다.An object of the present invention is to provide a method for more easily detecting or quantifying a target nucleic acid in a nucleic acid amplification product.

상기 목적을 달성하기 위하여, 본 발명은 (a) 검출용 핵산; dNTP; 표적핵산 증폭용 프라이머; 및 핵산중합효소를 함유하는 시료를 이용하여 표적핵산을 증폭시켜, 표적핵산 증폭반응 용액을 수득하는 단계; (b) 상기 표적핵산 증폭반응 용액에 글루코오스; 포스포에놀피루베이트(PEP); 헥소카이네이즈(hexokinase); 및 피루베이트 카이네이즈(pyruvate kinase)를 포함하는 표적핵산 검출반응 용액을 첨가하고, 상기 글루코오스를 글루코오스-6-인산으로 전환하는 단계; 및 (c) 상기 (b) 단계의 표적핵산 검출반응 용액의 글루코오스 농도를 측정하여 시료 내의 표적핵산을 검출 또는 정량하는 단계를 포함하는 시료 내 표적핵산의 검출 또는 정량 방법을 제공한다.In order to achieve the above object, the present invention (a) a nucleic acid for detection; dNTP; A target nucleic acid amplification primer; And amplifying the target nucleic acid using a sample containing the nucleic acid polymerase to obtain a target nucleic acid amplification reaction solution; (b) glucose in the target nucleic acid amplification solution; Phosphoenolpyruvate (PEP); Hexokinase; And adding a target nucleic acid detection reaction solution containing pyruvate kinase, and converting the glucose into glucose-6-phosphate; And (c) detecting or quantifying target nucleic acid in the sample by measuring the glucose concentration of the target nucleic acid detection reaction solution of step (b).

본 발명에 따르면, 저렴하며 누구나 쉽고 간편하게 사용할 수 있는 자가혈당측정기를 이용하여, 핵산증폭산물의 표적핵산을 빠르고 간편하게 검출 및 정량할 수 있다.According to the present invention, the target nucleic acid of the nucleic acid amplification product can be quickly and easily detected and quantified by using an inexpensive autonomous blood glucose meter that anyone can easily and conveniently use.

도 1은 본 발명에 따른 자가혈당측정기를 활용한 표적핵산 검출방법을 도식화하여 나타낸 것이다.
도 2는 dNTP 유무와 헥소카이네이즈 및 피루베이트 카이네이즈 효소의 첨가 여부 조합에 따라 변하는 용액 내의 포도당 농도를 자가혈당측정기로 측정한 결과를 나타낸 것이다(a: 효소가 첨가되지 않은 용액; b:헥소카이네이즈 첨가 용액; c: 헥소카이네이즈 및 피루베이트 카이네이즈 첨가용액; d: 헥소카이네이즈 및 피루베이트 카이네이즈가 첨가되었으나 dNTP가 첨가되지 않은 용액).
도 3은 서로 다른 종류의 dNTP 첨가 시, 헥소카이네이즈 및 피루베이트 카이네이즈 효소의 첨가 여부에 따라서 변하는 용액 내의 포도당 농도를 자가혈당측정기로 측정한 결과를 나타낸 것으로, (a), (b), (c), 및 (d)는 각각 dATP, dGTP, dCTP, 및 dTTP가 첨가된 용액이다.
도 4는 표적핵산 유무(회색막대:표적핵산 x, 분홍막대 표적핵산 o)와 헥소카이네이즈 및 피루베이트 카이네이즈 효소의 첨가 여부 조합에 따라 변하는 용액 내의 포도당 농도를 자가혈당측정기로 측정한 결과를 나타낸 것이다(a: 효소가 첨가되지 않은 용액; b: 헥소카이네이즈만 첨가된 용액; c:헥소카이네이즈 및 피루베이트 카이네이즈가 모두 첨가된 용액).
도 5는 PCR에 의해 생성되는 증폭 산물 농도에 따른 용액 내의 포도당 농도 변화를 자가혈당측정기로 측정한 결과를 나타낸 것이다.
도 6은 핵산의 종류에 따른 용액 내의 포도당 농도 변화를 자가혈당측정기로 측정한 결과를 나타낸 것이다(a: 핵산이 첨가되지 않은 용액; b:표적핵산 (Hepatitis B virus (이하 HBV) gDNA가 첨가된 용액이며, c:Escherichia coli gDNA가 첨가된 용액; d:Enterococcus faecium gDNA가 첨가된 용액).
1 is a schematic diagram showing a method for detecting a target nucleic acid using an auto-glycemic meter according to the present invention.
Figure 2 shows the results of measuring the glucose concentration in a solution that varies depending on the combination of the presence or absence of dNTP and the addition or absence of hexokinase and pyruvate kinase enzymes with an autoglucometer (a: solution without enzyme; b: addition of hexokinase Solution; c: solution of addition of hexokinase and pyruvate kinase; d: solution of addition of hexokinase and pyruvate kinase but no addition of dNTP).
Figure 3 shows the results of measuring the glucose concentration in a solution that varies depending on whether or not hexkinase and pyruvate kinase enzymes are added when different types of dNTP are added, and (a), (b), and (c) ), And (d) are solutions to which dATP, dGTP, dCTP, and dTTP were added, respectively.
Figure 4 shows the results of measuring the glucose concentration in a solution measured by an autoglycoscopy with a combination of the presence or absence of target nucleic acid (gray bar: target nucleic acid x, pink bar target nucleic acid o) and whether hexokinase and pyruvate kinase enzymes are added. (a: solution without enzyme added; b: solution with only hexokinase added; c: solution with both hexokinase and pyruvate kinase added).
Figure 5 shows the results of measuring the glucose concentration change in the solution according to the concentration of the amplification product generated by PCR with an auto-glycemic meter.
Figure 6 shows the results of measuring the glucose concentration change in the solution according to the type of nucleic acid with an auto-glycemic meter (a: a solution without nucleic acid added; b: target nucleic acid (Hepatitis B virus (hereinafter HBV) gDNA is added) Solution, c: Escherichia coli gDNA added solution; d: Enterococcus faecium gDNA added solution).

다른 식으로 정의되지 않는 한, 본 명세서에서 사용된 모든 기술적 및 과학적 용어들은 본 발명이 속하는 기술분야에서 숙련된 전문가에 의해서 통상적으로 이해되는 것과 동일한 의미를 갖는다. 일반적으로 본 명세서에서 사용된 명명법은 본 기술분야에서 잘 알려져 있고 통상적으로 사용되는 것이다. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by a person skilled in the art to which the present invention pertains. In general, the nomenclature used herein is well known in the art and commonly used.

본 발명에서는 세계적으로 가장 널리 보급되어 있는 현장형 체외진단 기기인 자가혈당측정기를 사용하여, 핵산 증폭산물에서 표적핵산을 보다 간편하게 검출 또는 정량하는 방법을 개발하고자 하였으며, dNTP가 존재할 경우, 인산화효소 연쇄반응에 의해, 용액 내의 포도당 농도가 줄어드는 원리를 이용하여, 표적핵산을 검출하는 방법을 개발하였다. In the present invention, the present invention was to develop a method for more easily detecting or quantifying target nucleic acid in a nucleic acid amplification product using an autologous blood glucose meter, which is the most widely used in vitro diagnostic device in the world, and when dNTP is present, a phosphatase chain A method of detecting target nucleic acid was developed using the principle of reducing the glucose concentration in a solution by reaction.

구체적으로, 본 발명은 dNTP와 표적핵산 증폭용 프라이머 및 핵산 중합효소를 함유하는 핵산 증폭반응용액에 표적핵산이 존재하는 경우, 표적핵산증폭반응에 의해 용액 내의 dNTP 농도가 줄어들게 되고, 이로 인해, 인산화효소 연쇄반응의 구동 효율이 감소함으로써, 최종적으로, 포도당 농도의 감소 정도가 줄어드는 원리를 기반으로 표적핵산을 검출하는 방법이다. Specifically, in the present invention, when target nucleic acid is present in a nucleic acid amplification reaction solution containing dNTP, a target nucleic acid amplification primer, and a nucleic acid polymerase, the concentration of dNTP in the solution is reduced by a target nucleic acid amplification reaction, thereby phosphorylation It is a method of detecting target nucleic acids based on the principle that the degree of reduction in glucose concentration is finally reduced by reducing the driving efficiency of the enzymatic chain reaction.

따라서, 본 발명은 (a) 검출용 핵산; dNTP; 표적핵산 증폭용 프라이머; 및 핵산중합효소를 함유하는 시료를 이용하여 표적핵산을 증폭시켜, 표적핵산 증폭반응 용액을 수득하는 단계; (b) 상기 표적핵산 증폭반응 용액에 글루코오스; 포스포에놀피루베이트(PEP); 헥소카이네이즈(hexokinase); 및 피루베이트 카이네이즈(pyruvate kinase)를 포함하는 표적핵산 검출반응 용액을 첨가하고, 상기 글루코오스를 글루코오스-6-인산으로 전환하는 단계; 및 (c) 상기 (b) 단계의 표적핵산 검출반응 용액의 글루코오스 농도를 측정하여 시료 내의 표적핵산을 검출 또는 정량하는 단계를 포함하는 시료 내 표적핵산의 검출 또는 정량 방법에 관한 것이다.Therefore, the present invention (a) a nucleic acid for detection; dNTP; A target nucleic acid amplification primer; And amplifying the target nucleic acid using a sample containing the nucleic acid polymerase to obtain a target nucleic acid amplification reaction solution; (b) glucose in the target nucleic acid amplification solution; Phosphoenolpyruvate (PEP); Hexokinase; And adding a target nucleic acid detection reaction solution containing pyruvate kinase, and converting the glucose into glucose-6-phosphate; And (c) detecting or quantifying target nucleic acids in the sample by measuring the glucose concentration of the target nucleic acid detection reaction solution of step (b).

본 발명의 방법의 표적핵산 검출반응 용액에서는 (i) 헥소카이네이즈 활성에 의해서 dNTP가 dNDP로 전환되는 단계; (ii) 상기 (i)의 헥소카이네이즈 활성에 의해 포도당이 글루코오스-6-인산(G6P)으로 전환되는 단계; (iii) 피루베이트 카이네이즈 활성에 의해, 상기 (i)에서 생성된 dNDP가 dNTP로 전환되는 단계; (iv) 상기 (ii)의 피루베이트 카이네이즈 활성에 의해 PEP가 피루베이트로 전환되는 단계; 및 (v) 상기 인산화효소 연쇄반응을 통해 용액 내의 포도당 농도가 지속적으로 감소하는 단계로 구성되는 인산화효소 연쇄반응이 수행된다.In the target nucleic acid detection reaction solution of the method of the present invention, (i) the conversion of dNTP to dNDP by hexokinase activity; (ii) converting glucose to glucose-6-phosphate (G6P) by the hexokinase activity of (i); (iii) converting dNDP produced in (i) to dNTP by pyruvate kinase activity; (iv) converting PEP to pyruvate by pyruvate kinase activity of (ii); And (v) a phosphatase chain reaction consisting of a step in which the glucose concentration in the solution is continuously reduced through the phosphatase chain reaction.

본 발명에서 시료에 표적핵산이 존재할 경우, PCR이 유도되어 용액 내의 dNTP가 소진되며, dNTP 농도 감소에 의해 인산화효소 연쇄반응의 구동 효율이 감소하고, 인산화효소 연쇄반응 구동 효율 감소에 의해 포도당 농도 감소 정도가 줄어들계되며, 줄어든 포도당 농도를 자가혈당측정기를 통해 측정하여, 표적핵산이 존재할 경우에는 dNTP 농도 감소에 의해, 포도당 농도가 적게 줄어들게되며, 표적핵산이 존재하지 않는 경우에는 용액 내 dNTP 감소가 없어, 인산화효소 연쇄반응이 증가하여 포도당 농도가 감소하게 된다. In the present invention, when the target nucleic acid is present in the sample, PCR is induced to exhaust the dNTP in the solution, the dNTP concentration decreases the driving efficiency of the phosphatase chain reaction, and the phosphorylase chain reaction decreases the driving efficiency to decrease the glucose concentration. The degree is reduced, and the reduced glucose concentration is measured by an auto-glucometer, whereby dNTP concentration decreases when the target nucleic acid is present, and the glucose concentration decreases less, and when the target nucleic acid is not present, dNTP decrease in solution. No, the phosphorylase chain reaction increases and the glucose concentration decreases.

본 발명에 있어서, 상기 (a) 단계의 표적핵산의 증폭은 핵산의 증폭방법이라면 제한없이 사용할 수 있으며, 바람직하게는 PCR 반응, RT-PCR,Gap-LCR 리가아제 연쇄 반응, Gap-LCR, 전사-중재 증폭, 자가 유지 염기서열 복제, 컨센서스 서열 프라이밍 중합효소 연쇄 반응 및 핵산염기서열 기반 증폭으로 구성된 군에서 선택되는 방법으로 수행할 수 있다.In the present invention, the amplification of the target nucleic acid in step (a) can be used without limitation as long as it is a nucleic acid amplification method, preferably PCR reaction, RT-PCR, Gap-LCR ligase chain reaction, Gap-LCR, transcription -It can be performed by a method selected from the group consisting of mediation amplification, self-retaining nucleotide sequence replication, consensus sequence priming polymerase chain reaction, and nucleic acid base sequence-based amplification.

본 발명에 있어서, 상기 (c) 단계의 측정은 혈당측정기를 이용하여 측정하는 것을 특징으로 할 수 있으며, 표적핵산이 없는 대조군을 이용한 결과보다 글루코오스의 농도가 높게 나타나는 경우, 시료에 표적핵산이 존재하는 것으로 결정하는 것을 특징으로 할 수 있으며, 바람직하게는 표적핵산이 없는 대조군을 이용한 결과보다 글루코오스의 농도가 105~200%로 높게 나타나는 경우, 시료에 표적핵산이 존재하는 것으로 결정할 수 있다.In the present invention, the measurement of step (c) may be characterized by measuring using a blood glucose meter, and when the concentration of glucose is higher than the result using a control group without target nucleic acid, the target nucleic acid is present in the sample. It can be characterized in that it is determined to be, preferably, when the concentration of glucose is higher than the result of using the control group without the target nucleic acid 105 ~ 200%, it can be determined that the target nucleic acid is present in the sample.

본 발명에서 제안하는 자가혈당측정기 기반 표적핵산 검출 기술에서는 헥소카이네이즈 활성에 의해 dNTP가 dNDP로 전환되면서, 포도당이 글루코오스-6-인산(G6P)로 전환된다. 이후, 피루베이트 카이네이즈의 활성에 의해 상기 생성된 dNDP가 dNTP로 전환되면서, 용액에 첨가된 PEP가 피루베이트로 전환되고, 상기 반응에서 생성된 dNTP는 다시 헥소카이네이즈 반응의 기질로서 사용된다. 상기 언급된 일련의 반응들에 의해 인산화효소 연쇄반응이 구성되며, 본 인산화효소 연쇄반응을 통해 자가혈당측정기를 활용한 표적핵산 검출 기술이 구현되는 것을 특징으로 할 수 있다.In the autologous glucose-based target nucleic acid detection technology proposed in the present invention, dNTP is converted to dNDP by hexokinase activity, and glucose is converted to glucose-6-phosphate (G6P). Subsequently, the generated dNDP is converted to dNTP by the activity of pyruvate kinase, and the PEP added to the solution is converted to pyruvate, and the dNTP generated in the reaction is used again as a substrate for the hexokinase reaction. The phosphatase chain reaction is constituted by the above-mentioned series of reactions, and the target nucleic acid detection technology using an auto-glycoscopy device may be implemented through the phosphatase chain reaction.

보다 구체적으로, 용액 내에 표적핵산이 존재하지 않을 경우, PCR이 유도되지 않게 되며, 초기에 넣어준 dNTP의 양이 그대로 용액 내에 남아 있게 된다. 따라서, 초기의 높은 농도의 dNTP에 의해, 인산화효소 연쇄반응이 활발히 유도되며, 최종적으로, 많은 양의 포도당이 G6P로 전환되어, 용액 내의 포도당 농도가 크게 감소하게 된다. 반면, 용액 내에 표적핵산이 존재할 경우, PCR이 활발히 유도됨으로써, 초기에 용액 내에 넣어준 dNTP의 일정량이 소모된다. PCR 구동에 의해 dNTP가 소모됨으로써, 상기 인산화효소 연쇄반응의 구동 효율이 낮아지게 되며, 결과적으로, 용액 내의 포도당 농도가 감소되는 정도가 줄어들게 된다. 이와 같이, 표적핵산의 유무에 따라 결정되는 포도당 농도를 자가혈당측정기를 이용하여 측정함으로써, 용액 내의 표적핵산을 검출하는 것을 특징으로 할 수 있다 (도 1).More specifically, when the target nucleic acid is not present in the solution, PCR is not induced, and the amount of dNTP initially added remains in the solution. Therefore, the initial high concentration of dNTP, the phosphorylase chain reaction is actively induced, and finally, a large amount of glucose is converted to G6P, the concentration of glucose in the solution is greatly reduced. On the other hand, when the target nucleic acid is present in the solution, PCR is actively induced, which consumes a certain amount of dNTP initially put in the solution. As dNTP is consumed by PCR driving, the driving efficiency of the phosphatase chain reaction is lowered, and as a result, the degree of decrease in glucose concentration in the solution is reduced. As described above, the target nucleic acid in the solution may be detected by measuring the glucose concentration determined according to the presence or absence of the target nucleic acid using an auto-glycemic meter (FIG. 1).

또한, 본 발명의 일 양태에서는 PCR에 의해 생성되는 증폭 산물의 농도와 인산화효소 연쇄반응에 의해 결정되는 포도당 농도 사이의 상관관계를 확인하였으며, 증폭 산물 농도 (0 ~ 75 nM)가 변화함에 따라, 용액 내의 포도당 농도가 선형적으로 변하는 것을 확인하여(도 5 참조), 본 발명의 자가혈당측정기 기반 표적핵산 검출 기술을 이용하여 PCR 증폭 산물의 정량적 검출이 가능한 것을 확인하였다.In addition, in one embodiment of the present invention, a correlation between the concentration of the amplification product generated by PCR and the glucose concentration determined by the phosphorylase chain reaction was confirmed, and as the amplification product concentration (0 to 75 nM) changed, It was confirmed that the glucose concentration in the solution changed linearly (see FIG. 5), and it was confirmed that quantitative detection of the PCR amplification product was possible using the autologous glucose-based target nucleic acid detection technology of the present invention.

본 발명에 이용되는 프라이머는 표적핵산의 한 부위에 혼성화 또는 어닐링되어 이중쇄 구조를 형성한다. 이러한 이중쇄 구조를 형성하는 데 적합한 핵산 혼성화의 조건은 Joseph Sambrook 등, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.(2001) 및 Haymes, B.D., 등, Nucleic Acid Hybridization, A Practical Approach, IRL Press, Washington, D.C. (1985)에 개시되어 있다. The primer used in the present invention is hybridized or annealed to one site of the target nucleic acid to form a double chain structure. Conditions for nucleic acid hybridization suitable for forming such a double chain structure include Joseph Sambrook et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (2001) and Haymes, BD, et al., Nucleic Acid Hybridization, A Practical Approach, IRL Press, Washington, DC (1985).

다양한 DNA 중합효소가 본 발명의 증폭에 이용될 수 있으며, E. coli DNA 중합효소 I의 "클레나우" 단편, 열안정성 DNA 중합효소 및 박테리오파아지 T7 DNA 중합효소를 포함한다. 바람직하게는, 중합효소는 다양한 박테리아 종으로부터 얻을 수 있는 열안정성 DNA 중합효소이고, 이는 Thermus aquaticus(Taq), Thermus thermophilus(Tth), Thermus filiformis, Thermis flavus, Thermococcus literalis, 및 Pyrococcus furiosus(Pfu)를 포함한다. 중합 반응을 실시할 때, 반응 용기에 반응에 필요한 성분들을 과량으로 제공하는 것이 바람직하다. 증폭반응에 필요한 성분들의 과량은, 증폭반응이 성분의 농도에 실질적으로 제한되지 않는 정도의 양을 의미한다. Mg2+ 와 같은 조인자, dATP, dCTP, dGTP 및 dTTP 를 소망하는 증폭 정도가 달성될 수 있을 정도로 반응 혼합물에 제공하는 것이 요청된다. 증폭반응에 이용되는 모든 효소들은 동일한 반응 조건에서 활성 상태일 수 있다. 사실, 완충액은 모든 효소들이 최적의 반응 조건에 근접하도록 한다. 따라서 본 발명의 증폭 과정은 반응물의 첨가와 같은 조건의 변화 없이 단일 반응물에서 실시될 수 있다.A variety of DNA polymerases can be used for amplification of the present invention, and include “Klenow” fragments of E. coli DNA polymerase I, thermostable DNA polymerase and bacteriophage T7 DNA polymerase. Preferably, the polymerase is a thermostable DNA polymerase obtainable from various bacterial species, which includes Thermus aquaticus (Taq), Thermus thermophilus (Tth), Thermus filiformis, Thermis flavus, Thermococcus literalis, and Pyrococcus furiosus (Pfu). Includes. When carrying out the polymerization reaction, it is preferable to provide the reaction vessel in excess of the components necessary for the reaction. The excess amount of components required for the amplification reaction means an amount such that the amplification reaction is not substantially limited to the concentration of the components. It is desired to provide a reaction mixture such as Mg2 +, dATP, dCTP, dGTP and dTTP to the reaction mixture to the extent that the desired degree of amplification can be achieved. All enzymes used in the amplification reaction may be active under the same reaction conditions. In fact, buffers ensure that all enzymes are close to optimal reaction conditions. Therefore, the amplification process of the present invention can be carried out in a single reactant without changing conditions such as the addition of reactants.

본 발명에서 어닐링 또는 혼성화는 표적핵산 서열과 프라이머 사이에 특이적 결합을 가능하게 하는 엄격조건 하에서 실시된다. 어닐링을 위한 엄격조건은 서열-의존적이며 주위 환경적 변수에 따라 다양하다.Annealing or hybridization in the present invention is carried out under stringent conditions that allow specific binding between the target nucleic acid sequence and the primer. The stringent conditions for annealing are sequence-dependent and vary depending on ambient environmental variables.

본 명세서에 기술된 용어 "증폭반응"은 핵산 분자를 증폭하는 반응을 의미한다. 다양한 증폭반응들이 당업계에 보고되어 있으며, 이는 중합효소 연쇄반응(이하 PCR이라 한다)(미국 특허 제4,683,195, 4,683,202, 및 4,800,159호), 역전사-중합효소 연쇄반응(이하 RT-PCR로 표기한다)(Sambrook 등, Molecular Cloning. A Laboratory Manual, 3rd ed. Cold Spring Harbor Press(2001)), Miller, H. I.(WO 89/06700) 및 Davey, C. 등 (EP 329,822)의 방법, 리가아제 연쇄 반응(ligase chain reaction; LCR)(17, 18), Gap-LCR(WO 90/01069), 복구 연쇄 반응(repair chain reaction; EP 439,182), 전사-중재 증폭(transcription-mediated amplification; TMA)(19) (WO 88/10315), 자가 유지 염기서열 복제(self sustained sequence replication)(20)(WO 90/06995), 타깃 폴리뉴클레오티드 염기서열의 선택적 증폭(selective amplification of target polynucleotide sequences)(미국 특허 제6,410,276호), 컨센서스 서열 프라이밍 중합효소 연쇄 반응(consensus sequence primed polymerase chain reaction; CP-PCR)(미국 특허 제4,437,975호), 임의적 프라이밍 중합효소 연쇄 반응(arbitrarily primed polymerase chain reaction; AP-PCR)(미국 특허 제5,413,909호 및 제5,861,245호), 핵산염기서열 기반 증폭(nucleic acid sequence based amplification; NASBA)(미국 특허 제5,130,238호, 제5,409,818호, 제5,554,517호, 및 제6,063,603호), 가닥 치환 증폭(strand displacement amplification) 및 고리-중재 항온성 증폭(loop-mediated isothermal amplification; LAMP)를 포함하나, 이에 한정되지는 않는다.As used herein, the term "amplification reaction" refers to a reaction that amplifies a nucleic acid molecule. Various amplification reactions have been reported in the art, which are polymerase chain reactions (hereinafter referred to as PCR) (US Pat. Nos. 4,683,195, 4,683,202, and 4,800,159), reverse transcriptase-polymerase chain reactions (hereinafter referred to as RT-PCR) (Sambrook et al., Molecular Cloning. A Laboratory Manual, 3rd ed. Cold Spring Harbor Press (2001)), Miller, HI (WO 89/06700) and Davey, C. et al. (EP 329,822), ligase chain reaction ( ligase chain reaction (LCR) (17, 18), Gap-LCR (WO 90/01069), repair chain reaction (EP 439,182), transcription-mediated amplification (TMA) (19) ( WO 88/10315), self sustained sequence replication (20) (WO 90/06995), selective amplification of target polynucleotide sequences (US Pat. No. 6,410,276) , Consensus sequence primed polymerase chain reaction (CP) -PCR) (US Pat. No. 4,437,975), randomly primed polymerase chain reaction (AP-PCR) (US Pat. Nos. 5,413,909 and 5,861,245), nucleic acid sequence-based amplification (nucleic acid sequence based amplification (NASBA) (US Pat. Nos. 5,130,238, 5,409,818, 5,554,517, and 6,063,603), strand displacement amplification, and loop-mediated isothermal amplification; LAMP).

사용 가능한 다른 증폭 방법들은 미국특허 제5,242,794, 5,494,810, 4,988,617호 및 미국 특허 제09/854,317호에 기술되어 있다. 본 발명의 가장 바람직한 구현예에서, 증폭 과정은 미국특허 제4,683,195호, 제4,683,202호 및 제4,800,159호에 개시된 PCR (polymerase chain reaction)에 따라 실시된다.Other amplification methods that can be used are described in U.S. Patent Nos. 5,242,794, 5,494,810, 4,988,617 and U.S. Patent No. 09 / 854,317. In the most preferred embodiment of the present invention, the amplification process is carried out according to the polymerase chain reaction (PCR) disclosed in U.S. Patent Nos. 4,683,195, 4,683,202 and 4,800,159.

PCR은 가장 잘 알려진 핵산 증폭방법으로, 그의 많은 변형과 응용들이 개발되어 있다. 예를 들어, PCR의 특이성 또는 민감성을 증진시키기 위해 전통적인 PCR 절차를 변형시켜 터치다운(touchdown) PCR, 핫 스타트(hot start) PCR, 네스티드(nested) PCR 및 부스터(booster) PCR이 개발되었다. 또한, 실시간(real-time) PCR, 분별 디스플레이 PCR(differential display PCR: DD-PCR), cDNA 말단의 신속 증폭(rapid amplification of cDNA ends: RACE), 멀티플렉스 PCR, 인버스 중합효소 연쇄반응(inverse polymerase chain reaction: IPCR), 벡토레트(vectorette) PCR, TAIL-PCR(thermal asymmetric interlaced PCR)및 멀티플렉스 PCR이 특정한 응용을 위해 개발되었다. PCR에 대한 자세한 내용은 McPherson, M.J., 및 Moller, S.G. PCR. BIOS Scientific Publishers, Springer-Verlag New York Berlin Heidelberg, N.Y. (2000)에 기재되어 있으며, 그의 교시사항은 본 명세서에 참조로 삽입된다. 본 명세서에서 용어 "프라이머"는 적합한 온도에서 적합한 완충액 내에서 적합한 조건(즉, 4종의 다른 뉴클레오사이드 트리포스페이트 및 중합반응 효소)하에서 주형-지시 DNA 합성의 개시점으로 작용할 수 있는 단일-가닥 올리고뉴클레오타이드를 의미한다. 프라이머의 적합한 길이는 다양한 인자, 예컨대, 온도와 프라이머의 용도에 따라 변이가 있지만 전형적으로 15-30 뉴클레오타이드이다. 짧은 프라이머 분자는 주형과 충분히 안정된 하이브리드 복합체를 형성하기 위하여 일반적으로 보다 낮은 온도를 요구한다.PCR is the most well-known nucleic acid amplification method, and many modifications and applications have been developed. For example, touchdown PCR, hot start PCR, nested PCR and booster PCR have been developed by modifying traditional PCR procedures to enhance the specificity or sensitivity of PCR. In addition, real-time PCR, differential display PCR (DD-PCR), rapid amplification of cDNA ends (RACE), multiplex PCR, inverse polymerase chain reaction (inverse polymerase) Chain reaction (IPCR), vectorette PCR, TAIL-PCR (thermal asymmetric interlaced PCR) and multiplex PCR have been developed for specific applications. For more information on PCR, see McPherson, M.J., and Moller, S.G. PCR. BIOS Scientific Publishers, Springer-Verlag New York Berlin Heidelberg, N.Y. (2000), the teachings of which are incorporated herein by reference. The term "primer" herein is a single-strand capable of acting as a starting point for template-directed DNA synthesis under suitable conditions (ie, four different nucleoside triphosphates and polymerases) in a suitable buffer at a suitable temperature. Means oligonucleotide. The suitable length of the primer varies depending on various factors, such as temperature and the use of the primer, but is typically 15-30 nucleotides. Short primer molecules generally require lower temperatures to form sufficiently stable hybrid complexes with the template.

프라이머의 서열은 주형의 일부 서열과 완전하게 상보적인 서열을 가질 필요는 없으며, 주형과 혼성화되어 프라이머 고유의 작용을 할 수 있는 범위 내에서의 충분한 상보성을 가지면 충분하다. 따라서, 본 발명에서의 프라이머쌍은 주형인 표적핵산 서열에 완벽하게 상보적인 서열을 가질 필요는 없으며, 이 서열에 혼성화되어 프라이머 작용을 할 수 있는 범위 내에서 충분한 상보성을 가지면 충분하다The sequence of the primer need not have a completely complementary sequence with some sequences of the template, and it is sufficient to have sufficient complementarity within a range capable of hybridizing with the template and working with the primer. Therefore, the primer pair in the present invention need not have a sequence perfectly complementary to the target nucleic acid sequence as a template, and it is sufficient to have sufficient complementarity within a range capable of hybridizing with this sequence and acting as a primer.

이하, 실시예를 통하여 본 발명을 더욱 상세히 설명하고자 한다. 이들 실시예는 오로지 본 발명을 예시하기 위한 것으로, 본 발명의 범위가 이들 실시예에 의해 제한되는 것으로 해석되지 않는 것은 당업계에서 통상의 지식을 가진 자에게 있어서 자명할 것이다.Hereinafter, the present invention will be described in more detail through examples. These examples are only for illustrating the present invention, it will be apparent to those skilled in the art that the scope of the present invention is not to be construed as limited by these examples.

실시예 1: PCR을 이용한 표적핵산 증폭반응 조건 확립Example 1: Establishment of target nucleic acid amplification reaction conditions using PCR

자가혈당측정기를 이용한 표적핵산 검출을 위하여는 먼저 PCR 반응이 선행되어야 한다. 이후 실시예에서 사용한 표적핵산 증폭을 위한 PCR 반응조건은 다음과 같다. In order to detect the target nucleic acid using an autoglycoscopy, a PCR reaction must be preceded. PCR reaction conditions for the target nucleic acid amplification used in the following examples are as follows.

사용한 PCR 용액 (최종 50 μL)은 dNTP (1 mM each) 5 μL, 하기 서열의 포워드/리버스 프라이머(각 10 mM) 4 μL, 표적핵산으로 HBV(Hepatitis B virus) gDNA(한국생명공학연구원) (107 카피/μL) 1 μL, 및 Taq DNA 폴리머라아제(5 U/μL) 0.5μL를 PCR 완충 용액에 첨가하여 제작하였으며, 10 mM Tris-HCl (pH 8.3), 50 mM KCl, 및 2 mM MgCl2를 포함하는 PCR 완충 용액을 사용하였다. 상기 PCR 용액을 95℃에서 5분 동안 예열한 후, 95℃ 30초, 55℃ 30초, 및 72℃ 1분의 온도 조절 과정을 40회 반복하였으며, 이후, 72℃에서 5분 동안 처리함으로써, 표적핵산을 증폭하였다.The PCR solution used (final 50 μL) is dNTP (1 mM each) 5 μL, forward / reverse primer (10 mM each) 4 μL of the following sequence, HBV (Hepatitis B virus) gDNA as target nucleic acid (Korea Research Institute of Bioscience and Biotechnology) (10 7 copies / μL) 1 μL, and Taq DNA polymerase (5 U / μL) 0.5 μL was prepared by adding to PCR buffer solution, 10 mM Tris-HCl (pH 8.3), 50 mM KCl, and 2 PCR buffer solution containing mM MgCl 2 was used. After preheating the PCR solution at 95 ° C for 5 minutes, the temperature control process of 95 ° C 30 seconds, 55 ° C 30 seconds, and 72 ° C 1 minute was repeated 40 times, and then treated at 72 ° C for 5 minutes, The target nucleic acid was amplified.

사용한 프라이머 서열은 다음과 같다.Primer sequences used are as follows.

Forward primer: 5'-CTC GCC AAC TTA CAA GGC-3'(서열번호 1)Forward primer: 5'-CTC GCC AAC TTA CAA GGC-3 '(SEQ ID NO: 1)

Reverse primer: 5'-CAG AGG TGA AGC GAA GTG-3'(서열번호 2)Reverse primer: 5'-CAG AGG TGA AGC GAA GTG-3 '(SEQ ID NO: 2)

실시예 2: 자가혈당측정기를 활용한 표적핵산 검출 반응 조건 확립Example 2: Establishment of target nucleic acid detection reaction conditions using an autoglucometer

자가혈당측정기를 활용한 표적핵산 검출반응 용액 (최종 50 μL)은 20 mM 포도당 5μL, 50 mM PEP(phosphoenolpyruvic acid) 2μL, 헥소카이네이즈(hexokinase) (2.5U/μL) 2μL, 피루베이트 카이네이즈(pyruvate kinase) (1U/μL) 5μL, 및 실시예 1에서 반응을 수행한 PCR 용액 25μL를 인산화효소 연쇄반응 완충용액(100mM Tris-HCl (pH 7.4) 및 10 mM MgCl2)에 첨가하여 제작하였다. The target nucleic acid detection reaction solution (final 50 μL) using an autoglucometer is 20 μm glucose 5 μL, 50 mM PEP (phosphoenolpyruvic acid) 2 μL, hexokinase (2.5 U / μL) 2 μL, pyruvate kinase ) (1U / μL) 5μL, and 25μL of the PCR solution performing the reaction in Example 1 was prepared by adding to the phosphatase chain reaction buffer solution (100mM Tris-HCl (pH 7.4) and 10 mM MgCl 2 ).

상기 표적핵산 검출반응 용액을 30℃에서 30분 동안 반응시킨 후, 자가혈당측정기를 이용하여 용액 내의 포도당 농도를 측정하였다.After reacting the target nucleic acid detection reaction solution at 30 ° C. for 30 minutes, the glucose concentration in the solution was measured using an auto-glucose meter.

실시예 3: dNTP에 의한 인산화효소 연쇄반응 구동 검증Example 3: Verification of the kinase chain reaction by dNTP

dNTP에 의한 인산화효소 연쇄반응의 구동을 검증하기 위한 실험을 진행하였다. 실험군은 효소가 첨가되지 않은 용액(a). 헥소카이네이즈(hexokinase)만 첨가된 용액(b), 헥소카이네이즈 및 피루베이트 카이네이즈(pyruvate kinase)가 모두 첨가된 용액 (c) 및 헥소카이네이즈 및 피루베이트 카이네이즈가 첨가되었지만, dNTP가 첨가되지 않은 용액 (d)으로 나누어 반응용액을 30℃에서 30분 동안 반응시킨 후, 자가혈당측정기를 이용하여 용액 내의 포도당 농도를 측정하였다.An experiment was conducted to verify the driving of the phosphorylase chain reaction by dNTP. In the experimental group, the solution without the addition of enzyme (a). Hexokinase (hexokinase) only solution (b), hexokinase and pyruvate kinase (pyruvate kinase) were added to both solutions (c) and hexokinase and pyruvate kinase were added but dNTP was not added (d After dividing), the reaction solution was reacted at 30 ° C for 30 minutes, and the glucose concentration in the solution was measured using an autoglucometer.

그 결과, 도 2에 나타난 바와 같이, 효소가 첨가되지 않은 용액(a) 대비, 헥소카이네이즈(hexokinase)가 첨가된 용액(b)의 용액 내의 포도당 농도가 감소하는 것을 확인하였다. 또한, 헥소카이네이즈 및 피루베이트 카이네이즈가 모두 첨가된 용액 (c)의 경우, 헥소카이네이즈만 첨가된 용액(b) 대비, 포도당 농도가 큰 폭으로 감소하는 것을 확인하였다. 상기 실험 결과를 통해, 본 발명에서 사용한 인산화효소 연쇄반응은 헥소카이네이즈 및 피루베이트 카이네이즈가 동시에 활성을 가지는 경우에만 높을 효율로 구동되는 것을 확인하였다. 또한, hexokinase 및 pyruvate kinase가 모두 첨가되었지만, dNTP가 첨가되지 않은 용액 (d)에서는 포도당 농도가 감소되지 않았다. 이를 통해, 본 발명에서 사용한 인산화효소 연쇄반응은 용액 내에 dNTP가 존재하는 경우에만 유도된다는 것을 확인하였다.As a result, as shown in FIG. 2, it was confirmed that the concentration of glucose in the solution of the solution (b) to which hexokinase (hexokinase) was added decreased compared to the solution (a) to which no enzyme was added. In addition, it was confirmed that in the case of the solution (c) in which both hexokinase and pyruvate kinase were added, the glucose concentration was significantly reduced compared to the solution (b) in which only hexokinase was added. Through the above experimental results, it was confirmed that the phosphatase chain reaction used in the present invention is driven with high efficiency only when hexokinase and pyruvate kinase have activity simultaneously. Further, both hexokinase and pyruvate kinase were added, but the glucose concentration was not decreased in the solution (d) without dNTP. Through this, it was confirmed that the phosphorylase chain reaction used in the present invention is induced only when dNTP is present in the solution.

실시예 4: 서로 다른 종류의 dNTP에 의한 인산화효소 연쇄반응 구동 검증Example 4: Verification of the kinase chain reaction by dNTP of different types

서로 다른 종류의 dNTP에 의한 인산화효소 연쇄반응의 구동을 검증하기 위한 실험을 진행하였다. 실험균은 각각 dATP (a), dGTP (b), dCTP (c) 및 dTTP (d)를 각각 함유하면서, 헥소카이네이즈만을 함유한 용액과 헥소카이네이즈와 피루베이트 카이네이즈를 함께 함유한 용액으로 나누어 진행하였다. Experiments were conducted to verify the driving of the phosphorylase chain reaction by different types of dNTPs. The experimental bacteria were divided into a solution containing only hexokinase and a solution containing hexokinase and pyruvate kinase, while containing dATP (a), dGTP (b), dCTP (c) and dTTP (d), respectively. .

그 결과, 도 3에 나타난 바와 같이, dATP (a) 및 dGTP (b)가 첨가된 용액의 경우, 헥소카이네이즈와 피루베이트 카이네이즈가 첨가되었을 때, 인산화효소 연쇄반응에 의해 용액 내의 포도당 농도가 크게 감소하는 것을 확인하였다. 반면, dCTP (c) 및 dTTP (d)가 첨가된 용액의 경우, 헥소카이네이즈와 피루베이트 카이네이즈가 첨가되더라도, 용액 내의 포도당 농도 감소가 크지 않음을 확인하였다. 상기 실험 결과를 통해, 본 발명에서 사용한 인산화효소 연쇄반응은 주로 dATP 및 dGTP에 의해 유도된다는 것을 확인하였다.As a result, as shown in FIG. 3, in the case of a solution in which dATP (a) and dGTP (b) were added, when hexokinase and pyruvate kinase were added, the glucose concentration in the solution was significantly reduced by the phosphatase chain reaction. Was confirmed. On the other hand, in the case of the solution to which dCTP (c) and dTTP (d) were added, it was confirmed that even if hexokinase and pyruvate kinase were added, the decrease in glucose concentration in the solution was not large. Through the above experimental results, it was confirmed that the phosphorylase chain reaction used in the present invention is mainly induced by dATP and dGTP.

실시예 5: 자가혈당측정기를 활용한 표적핵산 검출 반응 시스템 검증Example 5: Target nucleic acid detection reaction system verification using an auto-glucometer

상기 언급된 인산화효소 연쇄반응을 이용하여, 표적핵산의 유무에 따른 포도당 농도변화 확인실험을 진행하였다.Using the above-mentioned phosphatase chain reaction, an experiment was conducted to confirm the change in glucose concentration according to the presence or absence of the target nucleic acid.

실험은 실시예 2와 동일한 방법으로 수행하였으며, 어떠한 효소도 첨가되지 않은 경우(a), 헥소키아아제가 첨가된 경우(b), 헥소카이네이즈와 피루베이트 카이네이즈가 모두 첨가된 경우(c)로 나누어 수행하였다. The experiment was performed in the same manner as in Example 2, and when no enzyme was added (a), when hexokinase was added (b), when both hexokinase and pyruvate kinase were added (c) Was carried out.

그 결과, 어떠한 효소도 첨가되지 않은 경우 (a), 표적핵산 첨가 여부에 따른 포도당 농도 변화가 나타나지 않았다. 하지만, 헥소카이네이즈가 첨가된 경우 (b), 표적핵산 유무에 따른 포도당 농도 차이가 확인되었으며, 상기 인산화효소 연쇄반응을 유도하기 위해 헥소카이네이즈와 피루베이트 카이네이즈가 모두 첨가된 경우 (c), 표적핵산 유무에 따른 포도당 농도 차이가 더욱 증가하는 것을 확인하였다.As a result, when no enzyme was added (a), there was no change in glucose concentration depending on whether the target nucleic acid was added. However, when hexokinase was added (b), a difference in glucose concentration according to the presence or absence of a target nucleic acid was confirmed, and when both hexokinase and pyruvate kinase were added to induce the phosphatase chain reaction (c), target nucleic acid It was confirmed that the difference in glucose concentration according to the presence or absence was further increased.

실시예 6: PCR에 의해 생성되는 증폭 산물 농도에 따른 용액 내의 포도당 농도 변화 검증Example 6: Verification of glucose concentration change in solution according to amplification product concentration generated by PCR

PCR에 의해 생성되는 증폭 산물의 농도와 인산화효소 연쇄반응에 의해 결정되는 포도당 농도 사이의 상관관계를 확인하기 위한 실험을 진행하였다. An experiment was conducted to confirm the correlation between the concentration of the amplified product produced by PCR and the glucose concentration determined by the phosphatase chain reaction.

그 결과, 도 5에 나타난 바와 같이, 증폭 산물 농도 (0 ~ 75 nM)가 변화함에 따라, 용액 내의 포도당 농도가 선형적으로 변하는 것을 확인하였다. 상기 실험 결과를 통해, 본 발명에서 제안하는 자가혈당측정기 기반 표적핵산 검출기술을 이용하여 PCR 증폭 산물의 정량적 검출이 가능함을 검증하였다.As a result, as shown in Figure 5, as the amplification product concentration (0 ~ 75 nM) was changed, it was confirmed that the glucose concentration in the solution changes linearly. Through the above experimental results, it was verified that quantitative detection of PCR amplification products is possible using the target nucleic acid detection technology based on the autoglucometer proposed in the present invention.

실시예 7: 자가혈당측정기를 활용한 표적핵산 검출 기술 선택도 검증Example 7: Validation of target nucleic acid detection technology selectivity using autoglucometer

여러 종류의 핵산을 첨가하였을 때, 용액 내의 포도당 농도 변화를 확인하는 실험을 진행하였다. 실험군은 핵산이 첨가되지 않은 경우 (a), 표적핵산 (HBV gDNA)이 첨가된 경우 (b), 비특이적 핵산인 E.coli gDNA가 첨가된 경우 (c) 및 비특이적 핵산인 E.faecium gDNA가 첨가된 경우(d)로 나누어 수행하였다. When various types of nucleic acids were added, an experiment was conducted to confirm the change in glucose concentration in the solution. In the experimental group, when nucleic acid was not added (a), target nucleic acid (HBV gDNA) was added (b), non-specific nucleic acid E.coli gDNA was added (c) and non-specific nucleic acid E.faecium gDNA was added. It was performed by dividing the case (d).

그 결과, 도 6에 나타난 바와 같이, 표적핵산 (HBV gDNA)이 첨가된 용액 (b)의 경우, 핵산이 첨가되지 않은 용액 (a) 대비 월등히 높은 포도당 농도가 측정되었다. 하지만, 비특이적 핵산 (Escherichia coli (c) 및 Enterococcus faecium (d) gDNA)이 첨가된 용액의 경우, 핵산이 첨가되지 않은 용액 (a)과 비슷한 포도당 농도가 측정되었다. 상기 실험 결과를 통해, 본 발명에서 제안하는 자가혈당측정기 기반 표적핵산 검출기술의 선택도를 검증하였다.As a result, as shown in FIG. 6, in the case of the solution (b) to which the target nucleic acid (HBV gDNA) was added, a significantly higher glucose concentration was measured compared to the solution (a) to which the nucleic acid was not added. However, in the case of the solution to which the non-specific nucleic acid ( Escherichia coli (c) and Enterococcus faecium (d) gDNA) was added, the glucose concentration similar to the solution (a) to which the nucleic acid was not added was measured. Through the above experimental results, the selectivity of the target nucleic acid detection technology based on the autoglucometer proposed in the present invention was verified.

이상으로 본 발명 내용의 특정한 부분을 상세히 기술하였는바, 당업계의 통상의 지식을 가진 자에게 있어서 이러한 구체적 기술은 단지 바람직한 실시 양태일 뿐이며, 이에 의해 본 발명의 범위가 제한되는 것이 아닌 점은 명백할 것이다. 따라서 본 발명의 실질적인 범위는 첨부된 청구항들과 그것들의 등가물에 의하여 정의된다고 할 것이다.Since specific parts of the present invention have been described in detail above, it will be apparent to those skilled in the art that this specific technique is only a preferred embodiment, and the scope of the present invention is not limited thereby. will be. Therefore, the substantial scope of the present invention will be defined by the appended claims and their equivalents.

<110> Korea Advanced Institute of Science and Technology Bionano Health Guard Research Center <120> Method for Detecting Target Nucleic Acid using Personal Glucose Meter <130> P18-B262 <160> 2 <170> KopatentIn 2.0 <210> 1 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> primer <400> 1 ctcgccaact tacaaggc 18 <210> 2 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> primer <400> 2 cagaggtgaa gcgaagtg 18 <110> Korea Advanced Institute of Science and Technology          Bionano Health Guard Research Center <120> Method for Detecting Target Nucleic Acid using Personal Glucose          Meter <130> P18-B262 <160> 2 <170> KopatentIn 2.0 <210> 1 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> primer <400> 1 ctcgccaact tacaaggc 18 <210> 2 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> primer <400> 2 cagaggtgaa gcgaagtg 18

Claims (4)

다음 단계를 포함하는 시료 내 표적핵산의 검출 또는 정량 방법:
(a) 검출용 핵산; dNTP; 표적핵산 증폭용 프라이머; 및 핵산중합효소를 함유하는 시료를 이용하여 표적핵산을 증폭시켜, 표적핵산 증폭반응 용액을 수득하는 단계;
(b) 상기 표적핵산 증폭반응 용액에 글루코오스; 포스포에놀피루베이트(PEP); 헥소카이네이즈(hexokinase); 및 피루베이트 카이네이즈(pyruvate kinase)를 포함하는 표적핵산 검출반응 용액을 첨가하고, 상기 글루코오스를 글루코오스-6-인산으로 전환하는 단계; 및
(c) 상기 (b) 단계의 표적핵산 검출반응 용액의 글루코오스 농도를 측정하여 시료 내의 표적핵산을 검출 또는 정량하는 단계.
Method of detecting or quantifying target nucleic acid in a sample comprising the following steps:
(a) nucleic acid for detection; dNTP; A target nucleic acid amplification primer; And amplifying the target nucleic acid using a sample containing the nucleic acid polymerase to obtain a target nucleic acid amplification reaction solution;
(b) glucose in the target nucleic acid amplification solution; Phosphoenolpyruvate (PEP); Hexokinase; And adding a target nucleic acid detection reaction solution containing pyruvate kinase, and converting the glucose into glucose-6-phosphate; And
(c) detecting or quantifying target nucleic acid in the sample by measuring the glucose concentration of the target nucleic acid detection reaction solution of step (b).
제1항에, 상기 (a) 단계의 표적핵산의 증폭은 PCR 반응, RT-PCR,Gap-LCR 리가아제 연쇄반응, Gap-LCR, 전사-중재 증폭, 자가 유지 염기서열 복제, 컨센서스 서열 프라이밍 중합효소 연쇄반응 및 핵산염기서열 기반 증폭으로 구성된 군에서 선택되는 방법으로 수행하는 것을 특징으로 하는 방법.
The method of claim 1, wherein the amplification of the target nucleic acid in step (a) is PCR reaction, RT-PCR, Gap-LCR ligase chain reaction, Gap-LCR, transcription-mediated amplification, self-maintaining sequence replication, consensus sequence priming polymerization Method characterized in that it is carried out by a method selected from the group consisting of enzyme chain reaction and nucleic acid base sequence-based amplification.
제1항에 있어서, 상기 (c) 단계의 측정은 혈당측정기를 이용하여 측정하는 것을 특징으로 하는 방법.
The method of claim 1, wherein the measurement in step (c) is performed using a blood glucose meter.
제1항에 있어서, 표적핵산이 없는 대조군을 이용한 결과보다 글루코오스의 농도가 높게 나타나는 경우, 시료에 표적핵산이 존재하는 것으로 결정하는 것을 특징으로 하는 방법.




The method of claim 1, wherein when the concentration of glucose is higher than the result of using the control group without the target nucleic acid, a method characterized by determining that the target nucleic acid is present in the sample.




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