JPWO2021195218A5 - - Google Patents
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- JPWO2021195218A5 JPWO2021195218A5 JP2022557747A JP2022557747A JPWO2021195218A5 JP WO2021195218 A5 JPWO2021195218 A5 JP WO2021195218A5 JP 2022557747 A JP2022557747 A JP 2022557747A JP 2022557747 A JP2022557747 A JP 2022557747A JP WO2021195218 A5 JPWO2021195218 A5 JP WO2021195218A5
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- 150000007523 nucleic acids Chemical group 0.000 claims description 30
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 27
- 102100033342 Lysosomal acid glucosylceramidase Human genes 0.000 claims description 23
- 238000012217 deletion Methods 0.000 claims description 17
- 230000037430 deletion Effects 0.000 claims description 17
- 102100021244 Integral membrane protein GPR180 Human genes 0.000 claims description 12
- 230000001105 regulatory effect Effects 0.000 claims description 12
- 238000006467 substitution reaction Methods 0.000 claims description 12
- 210000004027 cell Anatomy 0.000 claims description 11
- 238000003780 insertion Methods 0.000 claims description 10
- 230000037431 insertion Effects 0.000 claims description 10
- 239000000203 mixture Substances 0.000 claims description 10
- 108020004414 DNA Proteins 0.000 claims description 8
- 108010017544 Glucosylceramidase Proteins 0.000 claims description 6
- 108700026244 Open Reading Frames Proteins 0.000 claims description 6
- 150000002632 lipids Chemical class 0.000 claims description 6
- 102000004169 proteins and genes Human genes 0.000 claims description 6
- 108090000623 proteins and genes Proteins 0.000 claims description 6
- 241000702421 Dependoparvovirus Species 0.000 claims description 4
- 210000005229 liver cell Anatomy 0.000 claims description 4
- 210000000663 muscle cell Anatomy 0.000 claims description 4
- 230000003612 virological effect Effects 0.000 claims description 4
- 108020005345 3' Untranslated Regions Proteins 0.000 claims description 3
- 108020003589 5' Untranslated Regions Proteins 0.000 claims description 3
- 239000003623 enhancer Substances 0.000 claims description 3
- 108020004707 nucleic acids Proteins 0.000 claims description 3
- 102000039446 nucleic acids Human genes 0.000 claims description 3
- 241001655883 Adeno-associated virus - 1 Species 0.000 claims description 2
- 241000702423 Adeno-associated virus - 2 Species 0.000 claims description 2
- 241000202702 Adeno-associated virus - 3 Species 0.000 claims description 2
- 241000580270 Adeno-associated virus - 4 Species 0.000 claims description 2
- 241001634120 Adeno-associated virus - 5 Species 0.000 claims description 2
- 241000972680 Adeno-associated virus - 6 Species 0.000 claims description 2
- 241001164823 Adeno-associated virus - 7 Species 0.000 claims description 2
- 241001164825 Adeno-associated virus - 8 Species 0.000 claims description 2
- 241000649045 Adeno-associated virus 10 Species 0.000 claims description 2
- 241000649046 Adeno-associated virus 11 Species 0.000 claims description 2
- 241000649047 Adeno-associated virus 12 Species 0.000 claims description 2
- 108020004705 Codon Proteins 0.000 claims description 2
- 208000015872 Gaucher disease Diseases 0.000 claims description 2
- 241000125945 Protoparvovirus Species 0.000 claims description 2
- 241000700605 Viruses Species 0.000 claims description 2
- 238000007792 addition Methods 0.000 claims description 2
- 239000002299 complementary DNA Substances 0.000 claims description 2
- 210000003527 eukaryotic cell Anatomy 0.000 claims description 2
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- 238000000034 method Methods 0.000 description 10
- 238000010253 intravenous injection Methods 0.000 description 2
- 206010021143 Hypoxia Diseases 0.000 description 1
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- 238000000338 in vitro Methods 0.000 description 1
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Description
参考文献
特許及び特許出願を含むがこれらに限定されない、本明細書及び本明細書の実施例で引用される全ての刊行物及び参考文献は、あたかも個々の刊行物又は参考文献が、完全に記載されるように参照により本明細書に組み込まれることが具体的かつ個別に示されるかのように、それらの全体が参照により組み込まれる。この出願が優先権を主張する任意の特許出願もまた、刊行物及び参考文献について上述した方法で、参照により本明細書に組み込まれる。
本発明は、例えば、以下の項目を提供する。
(項目1)
カプシド不含閉端DNA(ceDNA)ベクターであって、
隣接する逆方向末端反復配列(ITR)間に少なくとも1つの核酸配列を含み、少なくとも1つの核酸配列が、少なくとも1つのベータグルコセレブロシダーゼ(GBA)タンパク質をコードする、ceDNAベクター。
(項目2)
前記少なくとも1つのGBAタンパク質をコードする少なくとも1つの核酸配列が、表1に示される配列のうちのいずれか、又は表13のオープンリーディングフレーム配列(ORF)のうちのいずれかから選択される、項目1に記載のceDNAベクター。
(項目3)
前記ceDNAベクターが、前記少なくとも1つのGBAタンパク質をコードする少なくとも1つの核酸配列に作動可能に連結された、表7のプロモーターのうちのいずれかから選択されるプロモーターを含む、項目1又は2に記載のceDNAベクター。
(項目4)
前記ceDNAベクターが、表8のエンハンサーのうちのいずれかから選択されるエンハンサーを含む、項目1~3のいずれか一項に記載のceDNAベクター。
(項目5)
前記ceDNAベクターが、表9Aの5’UTR及び/又はイントロン配列のうちのいずれかから選択される5’UTR及び/又はイントロン配列を含む、項目1~4のいずれか一項に記載のceDNAベクター。
(項目6)
前記ceDNAベクターが、表9Bの3’UTR配列のうちのいずれかから選択される3’UTR配列を含む、項目1~5のいずれか一項に記載のceDNAベクター。
(項目7)
前記ceDNAベクターが、表10のポリA配列のうちのいずれかから選択される少なくとも1つのポリA配列を含む、項目1~6のいずれか一項に記載のceDNAベクター。
(項目8)
前記ceDNAベクターが、少なくとも1つの核酸配列に作動可能に連結された少なくとも1つのプロモーター配列を含む、項目1~7のいずれか一項に記載のceDNAベクター。
(項目9)
少なくとも1つの核酸配列が、cDNAである、項目1~8のいずれか一項に記載のceDNAベクター。
(項目10)
少なくとも1つのITRが、機能的末端分解部位及びRep結合部位を含む、項目1~9のいずれか一項に記載のceDNAベクター。
(項目11)
前記ITRの一方又は両方が、パルボウイルス、ディペンドウイルス、及びアデノ随伴ウイルス(AAV)から選択されるウイルスに由来する、項目1~10のいずれか一項に記載のceDNAベクター。
(項目12)
前記隣接するITRが、互いに対して対称又は非対称である、項目1~11のいずれか一項に記載のceDNAベクター。
(項目13)
前記隣接するITRが、対称又は実質的に対称である、項目12に記載のceDNAベクター。
(項目14)
前記隣接するITRが、非対称である、項目12に記載のceDNAベクター。
(項目15)
前記ITRの一方若しくは両方が野生型であるか、又は前記ITRの両方が野生型ITRである、項目1~14のいずれか一項に記載のceDNAベクター。
(項目16)
前記隣接するITRが、異なるウイルス血清型に由来する、項目1~15のいずれか一項に記載のceDNAベクター。
(項目17)
前記隣接するITRが、表2に示されるウイルス血清型のいずれかの対から選択される、項目1~16のいずれか一項に記載のceDNAベクター。
(項目18)
前記ITRの一方又は両方が、表3に示される配列から選択される配列を含む、項目1~17のいずれか一項に記載のceDNAベクター。
(項目19)
前記ITRの少なくとも一方が、野生型AAV ITR配列から、前記ITRの全体的な三次元立体構造に影響を与える欠失、付加、又は置換によって変更されている、項目1~18のいずれか一項に記載のceDNAベクター。
(項目20)
前記ITRの一方又は両方が、AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、及びAAV12から選択されるAAV血清型に由来する、項目1~19のいずれか一項に記載のceDNAベクター。
(項目21)
前記ITRの一方又は両方が、合成のものである、項目1~20のいずれか一項に記載のceDNAベクター。
(項目22)
前記ITRの一方若しくは両方が野生型ITRでないか、又は前記ITRの両方が野生型ITRでない、項目1~21のいずれか一項に記載のceDNAベクター。
(項目23)
前記ITRの一方又は両方が、A、A’、B、B’、C、C’、D、及びD’から選択されるITR領域のうちの少なくとも1つにおける欠失、挿入、及び/又は置換によって修飾されている、項目1~22のいずれか一項に記載のceDNAベクター。
(項目24)
前記欠失、前記挿入、及び/又は前記置換が、通常は前記A、A’、B、B’、C、又はC’領域によって形成されるステムループ構造の全部又は一部の欠失をもたらす、項目23に記載のceDNAベクター。
(項目25)
前記ITRの一方又は両方が、通常は前記B及びB’領域によって形成されるステムループ構造の全部又は一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている、項目1~24のいずれか一項に記載のceDNAベクター。
(項目26)
前記ITRの一方又は両方が、通常は前記C及びC’領域によって形成されるステムループ構造の全部又は一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている、項目1~24のいずれか一項に記載のceDNAベクター。
(項目27)
前記ITRの一方又は両方が、通常は前記B及びB’領域によって形成されるステムループ構造の一部、並びに/又は通常は前記C及びC’領域によって形成されるステムループ構造の一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている、項目1~24のいずれか一項に記載のceDNAベクター。
(項目28)
前記ITRの一方又は両方が、通常は前記B及びB’領域によって形成される第1のス
テムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステムループ構造を含む、項目1~27のいずれか一項に記載のceDNAベクター。
(項目29)
前記ITRの一方又は両方が、通常は前記B及びB’領域によって形成される第1のステムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステム及び2つのループを含む、項目1~28のいずれか一項に記載のceDNAベクター。
(項目30)
前記ITRの一方又は両方が、通常は前記B及びB’領域によって形成される第1のステムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステム及び単一のループを含む、項目1~29のいずれか一項に記載のceDNAベクター。
(項目31)
前記ITRの両方が、前記ITRが互いに対して反転されたときに全体的な三次元対称性をもたらすような様式で変更されている、項目1~30のいずれか一項に記載のceDNAベクター。
(項目32)
前記ITRの一方又は両方が、表3,5A、5B及び6に示される配列の1つ以上から選択される配列を含む、項目1~31のいずれか一項に記載のceDNAベクター。
(項目33)
少なくとも1つの核酸配列が、少なくとも1つの調節スイッチの制御下にある、項目1~32のいずれか一項に記載のceDNAベクター。
(項目34)
少なくとも1つの調節スイッチが、バイナリ調節スイッチ、小分子調節スイッチ、パスコード調節スイッチ、核酸ベース調節スイッチ、転写後調節スイッチ、放射線制御又は超音波制御の調節スイッチ、低酸素媒介調節スイッチ、炎症反応調節スイッチ、剪断活性化調節スイッチ、及びキルスイッチから選択される、項目33に記載のceDNAベクター。
(項目35)
表13から選択される核酸配列を含む、カプシド不含閉端DNA(ceDNA)ベクター。
(項目36)
配列番号385、配列番号386、配列番号387、配列番号388、配列番号389又は配列番号390から選択される核酸と少なくとも85%同一である核酸配列を含む、カプシド不含閉端DNA(ceDNA)ベクター。
(項目37)
配列番号385、配列番号386、配列番号387、配列番号388、配列番号389又は配列番号390からなる群から選択される核酸配列からなる、カプシド不含閉端DNA(ceDNA)ベクター。
(項目38)
細胞におけるベータグルコセレブロシダーゼ(GBA)タンパク質を発現する方法であって、前記細胞を項目1~34のいずれか一項に記載のceDNAベクターと接触させることを含む、方法。
(項目39)
配列番号385、配列番号386、配列番号387、配列番号388、配列番号389又は配列番号390のうちのいずれか1つに示されるORF核酸配列の翻訳によって産生されるGBAタンパク質。
(項目40)
前記細胞が、肝細胞又は筋細胞である、項目38に記載の方法。
(項目41)
前記細胞が、インビトロ又はインビボにある、項目38又は40に記載の方法。
(項目42)
前記少なくとも1つの核酸配列が、真核細胞における発現のためにコドン最適化される、項目38~41のいずれか一項に記載の方法。
(項目43)
前記少なくとも1つの核酸配列が、最適化されたコドンであり、表5のいずれかから選択される、項目38~41のいずれか一項に記載の方法。
(項目44)
ゴーシェ病を有する対象を治療する方法であって、項目1~34のいずれか一項に記載のceDNAベクター、又は項目39に記載のGBAタンパク質を前記対象に投与することを含み、少なくとも1つの核酸配列が、少なくとも1つのベータグルコセレブロシダーゼ(GBA)タンパク質をコードする、方法。
(項目45)
前記少なくとも1つのGBAタンパク質をコードする少なくとも1つの核酸配列が、表1に示される配列又は表13に含まれるORFのうちのいずれかから選択される、項目41に記載の方法。
(項目46)
前記ceDNAベクターが、静脈内注射により投与される、項目44又は45に記載の方法。
(項目47)
前記ceDNAベクターが、肝細胞、若しくは筋細胞、又はそれらの両方において前記GBAタンパク質を発現する、項目44~46のいずれか一項に記載の方法。
(項目48)
前記ceDNAベクターが、筋肉内注射、髄腔内注射、又は静脈内注射のうちのいずれか1つ以上によって投与される、項目44~47のいずれか一項に記載の方法。
(項目49)
項目1~37のいずれか一項に記載のceDNAベクターを含む、薬学的組成物。
(項目50)
項目1~37のいずれか一項に記載のceDNAベクターを含有する、細胞。
(項目51)
前記細胞が、肝細胞、若しくは筋細胞、又はそれらの両方である、項目50に記載の細胞。
(項目52)
項目1~37のいずれか一項に記載のceDNAベクター及び脂質を含む、組成物。
(項目53)
前記脂質が、脂質ナノ粒子(LNP)である、項目52に記載の組成物。
(項目54)
項目1~37のいずれか一項に記載のceDNAベクター、又は項目52若しくは53に記載の組成物、又は項目50に記載の細胞を含む、キット。
All publications and references cited in this specification and the examples herein, including but not limited to patents and patent applications, are incorporated by reference in their entirety as if each individual publication or reference was specifically and individually indicated to be incorporated by reference herein as if fully set forth. Any patent application to which this application claims priority is also incorporated by reference herein in the manner described above for publications and references.
The present invention provides, for example, the following items.
(Item 1)
A capsid-free closed-ended DNA (ceDNA) vector, comprising:
A ceDNA vector comprising at least one nucleic acid sequence between flanking inverted terminal repeats (ITRs), the at least one nucleic acid sequence encoding at least one beta-glucocerebrosidase (GBA) protein.
(Item 2)
2. The ceDNA vector of claim 1, wherein the at least one nucleic acid sequence encoding the at least one GBA protein is selected from any of the sequences shown in Table 1 or any of the open reading frame sequences (ORFs) of Table 13.
(Item 3)
3. The ceDNA vector of claim 1 or 2, wherein the ceDNA vector comprises a promoter selected from any of the promoters in Table 7, operably linked to at least one nucleic acid sequence encoding the at least one GBA protein.
(Item 4)
4. The ceDNA vector of any one of items 1 to 3, wherein the ceDNA vector comprises an enhancer selected from any of the enhancers in Table 8.
(Item 5)
5. The ceDNA vector of any one of items 1 to 4, wherein the ceDNA vector comprises a 5'UTR and/or intron sequence selected from any of the 5'UTR and/or intron sequences of Table 9A.
(Item 6)
6. The ceDNA vector of any one of items 1 to 5, wherein the ceDNA vector comprises a 3'UTR sequence selected from any of the 3'UTR sequences in Table 9B.
(Item 7)
7. The ceDNA vector of any one of items 1 to 6, wherein the ceDNA vector comprises at least one polyA sequence selected from any of the polyA sequences in Table 10.
(Item 8)
8. The ceDNA vector according to any one of items 1 to 7, wherein the ceDNA vector comprises at least one promoter sequence operably linked to at least one nucleic acid sequence.
(Item 9)
9. The ceDNA vector of any one of items 1 to 8, wherein at least one nucleic acid sequence is a cDNA.
(Item 10)
10. The ceDNA vector according to any one of items 1 to 9, wherein at least one ITR comprises a functional terminal resolution site and a Rep binding site.
(Item 11)
11. The ceDNA vector of any one of items 1 to 10, wherein one or both of the ITRs are derived from a virus selected from parvovirus, dependovirus, and adeno-associated virus (AAV).
(Item 12)
12. The ceDNA vector of any one of items 1 to 11, wherein the flanking ITRs are symmetric or asymmetric with respect to each other.
(Item 13)
13. The ceDNA vector of item 12, wherein the flanking ITRs are symmetric or substantially symmetric.
(Item 14)
13. The ceDNA vector of claim 12, wherein the flanking ITRs are asymmetric.
(Item 15)
15. The ceDNA vector according to any one of items 1 to 14, wherein one or both of the ITRs are wild-type or both of the ITRs are wild-type ITRs.
(Item 16)
16. The ceDNA vector of any one of items 1 to 15, wherein the flanking ITRs are derived from different viral serotypes.
(Item 17)
17. The ceDNA vector of any one of items 1 to 16, wherein the flanking ITRs are selected from any pair of viral serotypes shown in Table 2.
(Item 18)
18. The ceDNA vector of any one of items 1 to 17, wherein one or both of the ITRs comprises a sequence selected from the sequences shown in Table 3.
(Item 19)
19. The ceDNA vector of any one of items 1 to 18, wherein at least one of the ITRs is altered from a wild-type AAV ITR sequence by a deletion, addition, or substitution that affects the overall three-dimensional conformation of the ITR.
(Item 20)
20. The ceDNA vector of any one of items 1 to 19, wherein one or both of the ITRs are derived from an AAV serotype selected from AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, and AAV12.
(Item 21)
21. The ceDNA vector of any one of items 1 to 20, wherein one or both of the ITRs are synthetic.
(Item 22)
22. The ceDNA vector of any one of items 1 to 21, wherein one or both of the ITRs are not wild-type ITRs, or both of the ITRs are not wild-type ITRs.
(Item 23)
23. The ceDNA vector according to any one of the preceding claims, wherein one or both of the ITRs are modified by a deletion, insertion and/or substitution in at least one of the ITR regions selected from A, A', B, B', C, C', D and D'.
(Item 24)
24. The ceDNA vector of item 23, wherein the deletion, insertion and/or substitution results in the deletion of all or part of the stem-loop structure normally formed by the A, A', B, B', C or C' region.
(Item 25)
25. The ceDNA vector according to any one of items 1 to 24, wherein one or both of the ITRs are modified by deletion, insertion and/or substitution, resulting in the deletion of all or part of the stem-loop structure normally formed by the B and B' regions.
(Item 26)
25. The ceDNA vector according to any one of items 1 to 24, wherein one or both of the ITRs are modified by deletion, insertion and/or substitution, resulting in the deletion of all or part of the stem-loop structure normally formed by the C and C' regions.
(Item 27)
25. The ceDNA vector according to any one of items 1 to 24, wherein one or both of the ITRs are modified by a deletion, insertion and/or substitution resulting in the deletion of part of the stem-loop structure normally formed by the B and B' regions and/or of part of the stem-loop structure normally formed by the C and C' regions.
(Item 28)
One or both of the ITRs are typically the first sequence formed by the B and B' regions.
28. The ceDNA vector according to any one of items 1 to 27, comprising a single stem-loop structure in the region comprising the stem-loop structure and the second stem-loop structure formed by the C and C' regions.
(Item 29)
29. The ceDNA vector according to any one of items 1 to 28, wherein one or both of the ITRs comprise a single stem and two loops, usually in a region comprising a first stem-loop structure formed by the B and B' regions and a second stem-loop structure formed by the C and C' regions.
(Item 30)
30. The ceDNA vector according to any one of items 1 to 29, wherein one or both of the ITRs comprise a single stem and a single loop in a region that typically comprises a first stem-loop structure formed by the B and B' regions and a second stem-loop structure formed by the C and C' regions.
(Item 31)
31. The ceDNA vector of any one of items 1 to 30, wherein both of the ITRs are modified in such a manner as to result in overall three-dimensional symmetry when the ITRs are inverted relative to each other.
(Item 32)
32. The ceDNA vector of any one of items 1 to 31, wherein one or both of the ITRs comprises a sequence selected from one or more of the sequences shown in Tables 3, 5A, 5B and 6.
(Item 33)
33. The ceDNA vector of any one of items 1 to 32, wherein at least one nucleic acid sequence is under the control of at least one regulatory switch.
(Item 34)
34. The ceDNA vector of item 33, wherein the at least one regulatory switch is selected from a binary regulatory switch, a small molecule regulatory switch, a passcode regulatory switch, a nucleic acid-based regulatory switch, a post-transcriptional regulatory switch, a radiation-controlled or ultrasound-controlled regulatory switch, a hypoxia-mediated regulatory switch, an inflammatory response regulatory switch, a shear-activated regulatory switch, and a kill switch.
(Item 35)
A capsid-free closed-ended DNA (ceDNA) vector comprising a nucleic acid sequence selected from Table 13.
(Item 36)
A capsid-free closed-ended DNA (ceDNA) vector comprising a nucleic acid sequence that is at least 85% identical to a nucleic acid selected from SEQ ID NO:385, SEQ ID NO:386, SEQ ID NO:387, SEQ ID NO:388, SEQ ID NO:389, or SEQ ID NO:390.
(Item 37)
A capsid-free closed-ended DNA (ceDNA) vector consisting of a nucleic acid sequence selected from the group consisting of SEQ ID NO:385, SEQ ID NO:386, SEQ ID NO:387, SEQ ID NO:388, SEQ ID NO:389 or SEQ ID NO:390.
(Item 38)
35. A method for expressing beta-glucocerebrosidase (GBA) protein in a cell, comprising contacting said cell with a ceDNA vector according to any one of items 1 to 34.
(Item 39)
A GBA protein produced by translation of the ORF nucleic acid sequence shown in any one of SEQ ID NO:385, SEQ ID NO:386, SEQ ID NO:387, SEQ ID NO:388, SEQ ID NO:389 or SEQ ID NO:390.
(Item 40)
39. The method of claim 38, wherein the cell is a liver cell or a muscle cell.
(Item 41)
41. The method of claim 38 or 40, wherein the cell is in vitro or in vivo.
(Item 42)
42. The method of any one of items 38 to 41, wherein the at least one nucleic acid sequence is codon-optimized for expression in a eukaryotic cell.
(Item 43)
42. The method of any one of items 38 to 41, wherein the at least one nucleic acid sequence is codon optimized and selected from any of Table 5.
(Item 44)
40. A method of treating a subject having Gaucher disease, comprising administering to the subject a ceDNA vector according to any one of claims 1 to 34, or a GBA protein according to claim 39, wherein at least one nucleic acid sequence encodes at least one beta-glucocerebrosidase (GBA) protein.
(Item 45)
42. The method of claim 41, wherein the at least one nucleic acid sequence encoding the at least one GBA protein is selected from any of the sequences shown in Table 1 or the ORFs contained in Table 13.
(Item 46)
46. The method of claim 44 or 45, wherein the ceDNA vector is administered by intravenous injection.
(Item 47)
47. The method of any one of claims 44 to 46, wherein the ceDNA vector expresses the GBA protein in liver cells, or muscle cells, or both.
(Item 48)
48. The method of any one of items 44 to 47, wherein the ceDNA vector is administered by any one or more of intramuscular, intrathecal, or intravenous injection.
(Item 49)
A pharmaceutical composition comprising the ceDNA vector according to any one of items 1 to 37.
(Item 50)
A cell containing the ceDNA vector according to any one of items 1 to 37.
(Item 51)
51. The cell of item 50, wherein the cell is a liver cell, or a muscle cell, or both.
(Item 52)
38. A composition comprising the ceDNA vector according to any one of items 1 to 37 and a lipid.
(Item 53)
53. The composition of claim 52, wherein the lipid is a lipid nanoparticle (LNP).
(Item 54)
A kit comprising the ceDNA vector according to any one of items 1 to 37, or the composition according to item 52 or 53, or the cell according to item 50.
Claims (28)
隣接する逆方向末端反復配列(ITR)間に位置する少なくとも1つの核酸配列を含み、前記少なくとも1つの核酸配列が、少なくとも1つのベータグルコセレブロシダーゼ(GBA)タンパク質をコードする、ceDNAベクター。 A capsid-free closed-ended DNA (ceDNA) vector, comprising:
A ceDNA vector comprising at least one nucleic acid sequence located between adjacent inverted terminal repeats (ITRs), said at least one nucleic acid sequence encoding at least one beta-glucocerebrosidase (GBA) protein.
前記ceDNAベクターが、表8に示される配列のうちのいずれかからなる群から選択されるエンハンサーを含む;
前記ceDNAベクターが、表9Aに示される配列のうちのいずれかからなる群から選択される5’UTR及び/又はイントロン配列を含む;
前記ceDNAベクターが、表9Bに示される配列のうちのいずれかからなる群から選択される3’UTR配列を含む;
前記ceDNAベクターが、表10に示される配列のうちのいずれかからなる群から選択される少なくとも1つのポリA配列を含む;及び/又は
前記ceDNAベクターが、前記少なくとも1つの核酸配列に作動可能に連結された少なくとも1つのプロモーター配列を含む、
請求項1又は2に記載のceDNAベクター。 the ceDNA vector comprises a promoter selected from any of the sequences shown in Table 7 linked to the at least one nucleic acid sequence encoding the at least one GBA protein ;
The ceDNA vector comprises an enhancer selected from the group consisting of any of the sequences shown in Table 8;
the ceDNA vector comprises a 5'UTR and/or intron sequence selected from the group consisting of any of the sequences shown in Table 9A;
the ceDNA vector comprises a 3'UTR sequence selected from the group consisting of any of the sequences shown in Table 9B;
The ceDNA vector comprises at least one polyA sequence selected from the group consisting of any of the sequences shown in Table 10; and/or
the ceDNA vector comprises at least one promoter sequence operably linked to the at least one nucleic acid sequence ;
A ceDNA vector according to claim 1 or 2.
前記隣接するITRが、対称又は実質的に対称である;又は
前記隣接するITRが、非対称である、
請求項1~6のいずれか一項に記載のceDNAベクター。 the adjacent ITRs are symmetric or asymmetric with respect to each other ;
the adjacent ITRs are symmetric or substantially symmetric; or
the adjacent ITRs are asymmetric ;
A ceDNA vector according to any one of claims 1 to 6 .
前記隣接するITRの一方が野生型ITRではないか、又は前記隣接するITRの両方が野生型ITRではない;
前記隣接するITRが、異なるウイルス血清型に由来する;
前記隣接するITRの一方又は両方が、AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、及びAAV12から選択されるAAV血清型に由来する;
前記隣接するITRの一方又は両方が、表2に示されるウイルス血清型のいずれかの対からなる群から選択される;及び/又は
前記隣接するITRの一方又は両方が、表3に示される配列の1つ以上からなる群から選択される配列を含む、
請求項1~7のいずれか一項に記載のceDNAベクター。 one of the flanking ITRs is wild type or both of the ITRs are wild type ITRs ;
one of the flanking ITRs is not a wild-type ITR or both of the flanking ITRs are not wild-type ITRs;
the flanking ITRs are from different viral serotypes;
one or both of the flanking ITRs are derived from an AAV serotype selected from AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, and AAV12;
one or both of the flanking ITRs are selected from the group consisting of any pair of viral serotypes shown in Table 2; and/or
One or both of the flanking ITRs comprises a sequence selected from the group consisting of one or more of the sequences shown in Table 3 .
A ceDNA vector according to any one of claims 1 to 7 .
前記隣接するITRの一方又は両方が、前記B及びB’領域によって形成されるステムループ構造の全部又は一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている;又は
前記隣接するITRの一方又は両方が、前記C及びC’領域によって形成されるステムループ構造の全部又は一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている;又は
前記隣接するITRの一方又は両方が、前記B及びB’領域によって形成されるステムループ構造の一部、並びに/又は前記C及びC’領域によって形成されるステムループ構造の一部の欠失をもたらす、欠失、挿入、及び/又は置換によって修飾されている;又は
前記隣接するITRの一方又は両方が、野生型ITRにおいて、前記B及びB’領域によって形成される第1のステムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステムループ構造を含む;又は
前記隣接するITRの一方又は両方が、野生型ITRにおいて、前記B及びB’領域によって形成される第1のステムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステム及び2つのループを含む;又は
前記隣接するITRの一方又は両方が、野生型ITRにおいて、前記B及びB’領域によって形成される第1のステムループ構造と、前記C及びC’領域によって形成される第2のステムループ構造とを含む領域に、単一のステム及び単一のループを含む、
請求項1~10のいずれか一項に記載のceDNAベクター。 one or both of the flanking ITRs are modified by a deletion, insertion, and/or substitution in at least one of the ITR regions selected from the group consisting of A, A', B, B', C, C', D, and D' ;
one or both of the flanking ITRs have been modified by deletion, insertion, and/or substitution, resulting in the loss of all or part of the stem-loop structure formed by the B and B'regions; or
one or both of the flanking ITRs have been modified by deletion, insertion, and/or substitution, resulting in the loss of all or part of the stem-loop structure formed by the C and C'regions; or
one or both of the flanking ITRs have been modified by a deletion, insertion, and/or substitution that results in the loss of a portion of the stem-loop structure formed by the B and B' regions and/or a portion of the stem-loop structure formed by the C and C'regions; or
one or both of the flanking ITRs comprises a single stem-loop structure in a region that, in the wild-type ITR, comprises a first stem-loop structure formed by the B and B' regions and a second stem-loop structure formed by the C and C'regions; or
one or both of the flanking ITRs comprises a single stem and two loops in a region that, in the wild-type ITR, comprises a first stem-loop structure formed by the B and B' regions and a second stem-loop structure formed by the C and C'regions; or
one or both of the flanking ITRs comprises a single stem and a single loop in a region that, in the wild-type ITR, comprises a first stem-loop structure formed by the B and B' regions and a second stem-loop structure formed by the C and C'regions;
A ceDNA vector according to any one of claims 1 to 10 .
A kit comprising a ceDNA vector according to any one of claims 1 to 18 , or a composition according to claim 27 , or a cell according to claim 26 , and instructions for use .
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