JP4238909B2 - Raffinose synthase gene, method for producing raffinose and transformed plant - Google Patents

Description

  The present invention relates to a method for synthesizing raffinose using raffinose synthase, raffinose synthase or a cell extract containing raffinose synthase, DNA encoding raffinose synthase, and use of this DNA in plants. Raffinose has bifidobacteria growth activity and is used in various fields as a food raw material or as a medicine such as an organ preservation solution.

  Raffinose is one of the raffinose family oligosaccharides in which galactose is α-1,6 linked to the glucosyl group of sucrose. In addition to raffinose, raffinose genus oligosaccharides include stachyose to which two galactoses are bonded, and vervasose to which three are bonded. These sugars are stored sugars in the seeds of various plants such as beans, rapeseed, and cottonseed, as tumble sugars found in cucurbitaceous plants such as cucumbers and melons, and rosette leaves and sugar beet (sugar sugar) that have acquired cold resistance. Widely found in plants such as Japanese radish).

The biosynthesis of raffinose family oligosaccharides is as follows:
UDP-galactose + myo-inositol → galactinol + UDP (a)
Galactinol + sucrose → raffinose + myo-inositol (b)
Galactinol + raffinose → stachyose + myo-inositol (c)
Each reaction consists of (a) galactinol synthase (GS: EC 2.4.1.123), (b) raffinose synthase (RS: EC 2.4.1.82) (c) stachyose synthase (STS: EC 2.4.1.67) Catalyzed by

  Currently, raffinose is extracted from sugar beet and separated and purified in the sucrose purification process. However, raffinose reduces the crystallinity of sucrose, so that sugar beet is bred and improved with the aim of low raffinose, and the raffinose content in sugar beet is as low as 0.03% to 0.16% (Non-patent Document 1). Accordingly, it is not easy to obtain raffinose more efficiently than such a low content of sugar beet.

  As described above, raffinose is contained in legumes such as soybeans, and in cucurbits such as sugar beet and cucumber. Mature soybean seeds contain sucrose (content: about 5%), stachyose (about 4%), and raffinose (about 1%) as soybean oligosaccharides. These soybean oligosaccharides are recovered in a fraction deproteinized from defatted soybean, and after concentration, are used for functional foods and the like. However, raffinose is 10% of all oligosaccharides, and the amount is also small.

  On the other hand, an enzymatic synthesis method of raffinose has also been reported (Non-patent Document 2). This is a method of synthesizing raffinose by synthesizing galactobiose by a condensation reaction of α-galactosidase, and further transferring this galactobiose to sucrose by a galactosyl transfer reaction as a donor of galactosyl group. However, this reaction is a reaction in which 350 g of galactobiose is synthesized from 1.9 kg of lactose hydrolyzate, and 100 g of raffinose is obtained from 190 g of galactobiose and 760 g of sucrose, and the yield of raffinose produced is low and efficient. No new synthesis method has been reached.

In addition to the above method, a method of breeding a plant having a high raffinose content by transformation of a biosynthetic enzyme gene is also conceivable. For example, Kerr et al. Cloned a galactinol synthase gene and transformed rapeseed (Patent Document 1). But as a result, GS
Although the activity was increased, the raffinose family oligosaccharides decreased conversely, and the purpose of increasing the biosynthesis of the raffinose family oligosaccharides by introducing galactinol synthase was not achieved. Thus, no method has been provided for increasing the content of raffinose family oligosaccharides in plants.

  On the other hand, it is also required to reduce raffinose family oligosaccharides. As mentioned earlier, raffinose oligosaccharides are mainly stored sugars in the seeds of beans such as soybeans, rapeseed, and cottonseed, and invert sugars found in cucurbits and melons such as cucumbers. In addition, they are widely present in plants such as rosette leaves and sugar beet that have acquired cold resistance, and these raffinose family oligosaccharides are contained in oiled meals such as soybean, rapeseed and cottonseed. Most of these meals are used as feed, but humans and animals that do not have α-galactosidase cannot directly digest raffinose family oligosaccharides. In addition, raffinose family oligosaccharides are known to reduce the metabolic energy efficiency of feed, for example by intestinal bacteria assimilating and generating gas, and by removing raffinose family oligosaccharides in feed, It has been reported that feed efficiency has increased (Non-patent Document 3). For these reasons, forage crops such as soybean, rapeseed, and cottonseed that have reduced raffinose family oligosaccharides are desired.

  Moreover, breeding which increases the oil content has been made among these plants. The photosynthetic products are distributed into carbohydrates including fats and oils, proteins, and raffinose family oligosaccharides. In soybean, it has been reported that there is a negative correlation between the amount of fat and oil and the sugar mass. By suppressing the production of raffinose family oligosaccharides, it is expected to increase the fat content in soybeans with the same photosynthetic ability.

  In view of the above, Kerr et al. Have reported that a low raffinose oligosaccharide soybean cultivar having a raffinose oligosaccharide reduction of 80% to 90% has been produced by cross selection breeding (Patent Document 2). However, this is the production of varieties and cannot be applied to various varieties corresponding to cultivation suitability and disease resistance. Moreover, it cannot be applied to a wide variety of plants.

  Raffinose, which is also contained in sugar beet and sugarcane, is known to reduce the crystallinity of sugar. Therefore, without the production of raffinose, it can be expected that the efficiency of sugar production in these plants will increase, but no sugar beet that does not contain raffinose has been produced.

As described above, the conventionally purified raffinose synthase has only been confirmed as an enzyme activity, and the enzyme has not been identified. Moreover, its activity is low, and raffinose synthase with high activity has been desired. Further, the conventional method for producing raffinose has a low yield, and an efficient method for producing raffinose has been desired. On the other hand, it is also desired to breed plants with reduced raffinose family oligosaccharides.
Enzyme Microb. Technol., Vol. 4 May, 130-135 (1982) Trends in Glycoscience and Glycotechnology 7.34, 149-158 (1995) WO93 / 02196 Coon, Proceeding Soybean Utilization Alternatives.University of Minnesota, 203-211 (1989) WO93 / 00742

  The present invention has been made from the above viewpoint, and obtains highly active raffinose synthase and a DNA encoding the same, an efficient method for enzymatic synthesis of raffinose, and utilization of the DNA encoding raffinose synthase in plants. The challenge is to provide a law.

As a result of intensive studies to solve the above problems, the present inventors have succeeded in purifying raffinose synthase from cucumber. In addition, the present inventors diligently studied to clone a gene encoding this raffinose synthase. As a result, single-stranded DNA was chemically synthesized based on the nucleotide sequence deduced from the amino acid sequence of the raffinose synthase peptide fragment of cucumber, and poly (A) ⁺ extracted from cucumber using this single-stranded synthetic DNA as a primer. PCR was performed using cDNA prepared from RNA as a template to obtain a DNA fragment specific for the raffinose synthase gene. Further, the raffinose synthase gene was isolated by hybridization with a cucumber-derived cDNA library using this DNA fragment as a probe to isolate the raffinose synthase gene. In addition, intensive research was conducted to clone the soybean-derived raffinose synthase gene based on information on the cucumber-derived raffinose synthase gene. As a result, the soybean-derived raffinose synthase gene was isolated. Using this isolated raffinose synthase gene fragment, a chimeric gene having a control region that can be expressed in a plant was prepared, and the plant was transformed. Furthermore, the introduced raffinose synthase gene has led to the creation of plants with reduced raffinose family oligosaccharides.

That is, the present invention provides a raffinose synthase having an activity of generating raffinose from sucrose and galactinol.
Preferably, the present invention provides a raffinose synthase which is a protein shown in the following (A), (B), (C) or (D).
(A) A protein having the amino acid sequence set forth in SEQ ID NO: 5 in the sequence listing.
(B) the amino acid sequence of SEQ ID NO: 5 in the sequence listing, comprising an amino acid sequence including substitution, deletion, insertion, addition, or inversion of one or several amino acids, and raffinose from sucrose and galactinol. Protein with activity to produce.
(C) A protein having the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing.
(D) the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing, comprising an amino acid sequence containing one or several amino acid substitutions, deletions, insertions, additions, or inversions, and raffinose from sucrose and galactinol. Protein with activity to produce.

The present invention also provides a raffinose synthase having the following properties.
(1) Action and substrate specificity: Raffinose is produced from sucrose and galactinol. (2) Optimum pH: about 6-8
(3) Optimum temperature: about 35-40 ° C
(4) Molecular weight:
(i) Molecular weight measured by gel filtration chromatography: about 75 kDa to 95 kDa
(ii) Molecular weight measured by polyacrylamide gel electrophoresis (Native PAGE): about 90 kDa to 100 kDa
(iii) Molecular weight measured by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions: about 90 kDa to 100 kDa
(5) Inhibition:
Inhibited by iodoacetamide, N-ethylmaleimide, myo-inositol.

  The present invention provides, as a specific embodiment of the raffinose synthase, a raffinose synthase containing each amino acid sequence shown in SEQ ID NOs: 28 to 30 in the amino acid sequence.

The present invention also provides raffinose synthase, which is a protein shown in the following (C) or (D).
(C) A protein having the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing.
(D) the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing, comprising an amino acid sequence containing one or several amino acid substitutions, deletions, insertions, additions, or inversions, and raffinose from sucrose and galactinol. Protein with activity to produce.

  The present invention also provides a method for producing raffinose, characterized in that raffinose is produced by allowing the raffinose synthase to act on sucrose and galactinol.

The present invention further provides DNA encoding the raffinose synthase, and particularly DNA encoding the protein shown in the following (A), (B), (C) or (D).
(A) A protein having the amino acid sequence set forth in SEQ ID NO: 5 in the sequence listing.
(B) the amino acid sequence of SEQ ID NO: 5 in the sequence listing, comprising an amino acid sequence including substitution, deletion, insertion, addition, or inversion of one or several amino acids, and raffinose from sucrose and galactinol. Protein with activity to produce.
(C) A protein having the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing.
(D) the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing, comprising an amino acid sequence containing one or several amino acid substitutions, deletions, insertions, additions, or inversions, and raffinose from sucrose and galactinol. Protein with activity to produce.

The present invention provides the following DNA (a), (b), (c) or (d) as a specific embodiment of the above DNA.
(A) A DNA comprising a base sequence consisting of at least base numbers 56 to 2407 among the base sequences set forth in SEQ ID NO: 4 in the sequence listing.
(B) Among the nucleotide sequences described in SEQ ID NO: 4 in the sequence listing, it hybridizes under stringent conditions with a nucleotide sequence consisting of at least nucleotide numbers 56 to 2407, and has an activity to generate raffinose from sucrose and galactinol. DNA encoding a protein. (C) DNA comprising a base sequence consisting of at least base numbers 156 to 2405 among the base sequences set forth in SEQ ID NO: 23 in the sequence listing.
(D) Of the base sequence set forth in SEQ ID NO: 23 in the sequence listing, it hybridizes with a base sequence consisting of at least base numbers 156 to 2405 under stringent conditions, and has an activity of generating raffinose from sucrose and galactinol DNA encoding a protein.

The present invention also provides a DNA that can be used to express an antisense RNA or a sense RNA of raffinose synthase, that is, a DNA shown in the following (e) or (f).
(E) A DNA that hybridizes under stringent conditions with a nucleotide sequence consisting of at least nucleotide numbers 56 to 2407 or a complementary nucleotide sequence thereof among the nucleotide sequences set forth in SEQ ID NO: 4 in the sequence listing.
(F) A DNA that hybridizes under stringent conditions with a nucleotide sequence consisting of at least nucleotide numbers 156 to 2405 or a complementary nucleotide sequence thereof among the nucleotide sequences set forth in SEQ ID NO: 23 in the Sequence Listing.

  Furthermore, the present invention provides a chimeric gene comprising a raffinose synthase gene or a part thereof and a transcriptional control region that can be expressed in plant cells, and a plant transformed with this chimeric gene.

  The present invention also provides a method for changing the raffinose group oligosaccharide content of the plant by transforming the plant with the chimeric gene and expressing the gene in a plant cell.

Hereinafter, raffinose synthase having the properties described in (1) to (5) above or (
The raffinose synthase which is a protein of A), (B), (C) and (D) may be simply referred to as “raffinose synthase”. In addition, DNA encoding raffinose synthase or DNA encoding raffinose synthase and further including an untranslated region may be referred to as “raffinose synthase gene”.

  The present invention provides a purified raffinose synthase, a raffinose synthase gene, a chimera gene having a raffinose synthase gene and a control region that can be expressed in plants, and a plant into which the chimera gene has been introduced.

  By using the raffinose synthase of the present invention, raffinose can be efficiently synthesized from sucrose and galactinol. Moreover, the raffinose group oligosaccharide content of a plant can be changed by utilizing the raffinose synthase gene or chimeric gene of the present invention.

Hereinafter, the present invention will be described in detail.
<1> Raffinose synthase of the present invention The raffinose synthase of the present invention is a protein shown in the following (A), (B), (C) or (D).
(A) A protein having the amino acid sequence set forth in SEQ ID NO: 5 in the sequence listing.
(B) the amino acid sequence of SEQ ID NO: 5 in the sequence listing, comprising an amino acid sequence including substitution, deletion, insertion, addition, or inversion of one or several amino acids, and raffinose from sucrose and galactinol. Protein with activity to produce.
(C) A protein having the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing.
(D) the amino acid sequence set forth in SEQ ID NO: 24 in the sequence listing, comprising an amino acid sequence containing one or several amino acid substitutions, deletions, insertions, additions, or inversions, and raffinose from sucrose and galactinol. Protein with activity to produce.

The raffinose synthase of the present invention includes those having the following properties.
(1) Action and substrate specificity: Raffinose is produced from sucrose and galactinol. (2) Optimum pH: about 6-8
(3) Optimum temperature: about 35-40 ° C
(4) Molecular weight:
(i) Molecular weight measured by gel filtration chromatography: about 75 kDa to 95 kDa
(ii) Molecular weight measured by polyacrylamide gel electrophoresis (Native PAGE): about 90 kDa to 100 kDa
(iii) Molecular weight measured by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions: about 90 kDa to 100 kDa
(5) Inhibition:
Inhibited by iodoacetamide, N-ethylmaleimide, myo-inositol.

  The raffinose synthase having the above properties has been isolated and purified from cucumber true leaves, and was first identified by the inventors. This cucumber-derived raffinose synthase includes the amino acid sequences shown in SEQ ID NOs: 1 to 3 or 28 to 30 in the amino acid sequence of the enzyme protein, as shown in Examples below. The entire amino acid sequence is shown in SEQ ID NO: 5 in the sequence listing.

Raffinose synthase is obtained from cucurbitaceae plants such as melon (Cucumis melo) and cucumber (Cucumis sativus). In particular, the leaves of these plants, especially the veins and the seeds and other tissues have a high content of raffinose synthase.

Next, as an example of the method for producing the raffinose synthase of the present invention, a method for isolating and purifying raffinose synthase from cucumber will be described.
From 6 to 10 weeks after sowing, cucumber leaves are collected, ground using liquid mortar or the like under liquid nitrogen, and buffer is added to extract proteins. At that time, a substance for preventing degradation or inactivation of raffinose synthase, for example, a protease inhibitor such as PMSF (phenylmethanesulfonyl fluoride), polyclar AT (manufactured by Selva), etc. may be added. . An insoluble matter is removed from the extract by filtration and centrifugation to obtain a crude extract.

  The raffinose synthase is obtained by fractionating the crude extract obtained as described above in combination with a conventional protein purification method, for example, anion exchange chromatography, hydroxyapatite chromatography, gel filtration, salting out, etc. Can be purified.

  Anion exchange chromatography uses, for example, a column packed with a strongly basic anion exchanger such as HiTrapQ (Pharmacia) or a weakly basic anion exchanger such as DEAE-TOYOPEARL (Tosoh). Can be done by. An extract containing raffinose synthase is passed through these columns to adsorb the enzyme to the columns, the column is washed, and then the enzyme is eluted using a high salt concentration buffer. At that time, the salt concentration may be increased stepwise, or a concentration gradient may be applied. For example, when a HiTrapQ column is used, the raffinose synthase activity adsorbed on the column is eluted with about 0.3M NaCl. Further, in DEAE-TOYOPEARL, a NaCl concentration gradient of 0.05 M to 0.35 M is preferable as an eluent, and in a hydroxyapatite chromatography, a phosphoric acid concentration gradient of 0.01 M to 0.3 M is preferable as an eluent.

  The order of the above operations is not particularly limited, and each operation may be repeated twice or more. In addition, before passing the sample solution through each column, it is desirable to exchange the sample solution with a suitable buffer solution by dialysis or the like. Further, the sample solution may be concentrated at each stage.

In each step of purification, it is preferable to measure raffinose synthase activity contained in the fractionated fraction, collect fractions with high activity, and use them in the next step. Examples of the method for measuring raffinose synthase activity include a method using a radioisotope reported by Lehle, H et al. (Eur. J. Biochem., 38, 103-110 (1973)). As a variation of this, the reaction temperature and substrate concentration may be changed. For example, the final concentration is 10 mM ¹⁴ C-sucrose, 20 mM galactinol, 25 mM HEPES (2- (4- (2-hydroxyethyl) -1-piperazinyl) ethanesulfonic acid) -NaOH, pH 7.0, 5 mM DTT (dithiothrei Toll), add 10 μl of enzyme solution to make 50 μl. This is incubated at 32 ° C. for 1 hour to carry out the reaction, 200 μl of ethanol is added, and the reaction is stopped by heating at 95 ° C. for 30 seconds. The centrifugal supernatant of this reaction solution was spotted on Whatman 3MM filter paper and developed with n-propanol: ethyl acetate: water = 4: 1: 2. The incorporation of ¹⁴ C into raffinose is examined, and this is defined as raffinose synthase activity (nmol / hour).

  As an alternative to the above method, the present inventor has developed a method for measuring raffinose synthase activity by quantifying raffinose produced by a raffinose synthesis reaction by HPLC (high performance liquid chromatography). According to this method, measurement can be carried out more easily and quickly than the method of Lehle, H et al., And it is particularly suitable for detecting active fractions in purification operations. The method will be described below.

In the raffinose synthesis reaction, 10-50 μl of raffinose synthase solution is added to a reaction solution prepared so that the final concentration becomes the following composition to make 100 μl, and the reaction is performed at 32 ° C. for 60 minutes.
[Reaction solution composition (final concentration)]
2.5 mM sucrose
5 mM Galactinol
5 mM DTT
20 mM Tris-HCl buffer (pH 7.0)

  After performing the reaction as described above, 4 times the volume of ethanol of the reaction solution is added, and the reaction is stopped by heating at 95 ° C. for 30 seconds. This is centrifuged, and the centrifugal supernatant is dried under reduced pressure, then dissolved in distilled water, and raffinose in the reaction product is quantified by HPLC to obtain raffinose enzyme activity. HPLC can be performed using, for example, a sugar analysis system DX500 (CarboPac PA1 column, pulsed amperometry detector (Dionex)).

  The results of measuring the amount of raffinose produced when the reaction time is changed by the above method are shown in FIG. As is apparent from the figure, the raffinose synthase activity can be easily measured with good linearity by this method.

  Confirmation of the degree of purification and measurement of molecular weight of the purified raffinose synthase can be performed by gel electrophoresis, gel filtration chromatography, or the like. Enzymatic properties can be examined by measuring the enzyme activity by changing the reaction temperature or pH, or by adding various enzyme inhibitors or metal ions to the reaction solution and measuring the residual enzyme activity. do it. Furthermore, the stable pH range and stable temperature range can be examined by measuring the enzyme activity after exposing raffinose synthase to various pH conditions or temperature conditions for a certain period of time.

  It should be noted that the above-mentioned properties of raffinose synthase are determined in this way, but different results may be obtained depending on the measurement conditions. For example, the measurement of molecular weight by gel filtration chromatography is affected by the type of gel filtration carrier and buffer used, or the molecular weight marker. In addition, enzyme activity often varies depending on the type of buffer or salt concentration even at the same pH. Therefore, when identifying raffinose synthase, it is preferable to conduct comprehensive examinations as well as individual properties.

  The raffinose synthase of the present invention can be obtained by isolating and purifying from cucumber as described above, but it is derived from cucumber-derived, soybean-derived or other plants, which will be described later, by a method usually used for fermentation production of heterologous proteins. It can also be produced by introducing a DNA encoding the derived raffinose synthase into a suitable host and expressing it.

  As hosts for expressing the raffinose synthase gene, various prokaryotic cells such as Escherichia coli and various eukaryotic cells such as Saccharomyces cerevisiae can be considered. Plant cells, particularly cells derived from plants such as tobacco, cucumber and Arabidopsis (Arabidopsis) are desirable.

  A recombinant plasmid used for transformation can be prepared by inserting a DNA encoding raffinose synthase into an expression vector corresponding to the type of cell to be expressed. The plant expression vector only needs to have a promoter DNA sequence that works in plants, or a combination of them, and a terminator DNA sequence that works in plants, and a sequence into which a foreign gene can be inserted.

  Examples of such promoters include NaMV that is expressed in a site-specific manner such as a seed such as a CaMV 35 SRNA promoter, CaMV 19 SRNA promoter, nopaline synthase promoter, etc. that are expressed in the whole plant, a RubisCO small subunit promoter that is expressed in green tissue, and the like. Examples thereof include promoters of genes such as napin) and phaseolin. Further, examples of the terminator as described above include a nopaline synthase terminator, a RubisCO small subunit 3 'side site, and the like.

  Since pBI121, p35S-GFP (manufactured by CLONTECH) and the like are commercially available as plant expression vectors, these may be used. A vector expressing viral RNA may be used to replace the encoded coat protein and other genes with a raffinose synthase gene.

  For transformation, a commonly used method, Agrobacterium method, particle gun method, electroporation method, PEG method or the like may be used according to the host cell to be tested. For the detection of raffinose synthase activity, a method in which raffinose synthase purification is performed can be used. At that time, it is desirable to remove α-galactosidase in advance by passing the sample through an anion exchange column.

  The gene encoding raffinose synthase derived from cucumber includes any gene that has raffinose synthase activity when expressed, but preferably has DNA encoding the amino acid sequence described in SEQ ID NO: 5 in the sequence listing Examples thereof include a gene or a gene having the base sequence described in SEQ ID NO: 4 in the sequence listing. Further, the gene encoding raffinose synthase derived from soybean is all included as long as it has raffinose synthase activity when expressed, but preferably a DNA encoding the amino acid sequence described in SEQ ID NO: 24 in the sequence listing Or a gene having the base sequence set forth in SEQ ID NO: 23 in the Sequence Listing. The gene encoding the amino acid sequence described in SEQ ID NO: 5 or 24 in the sequence listing includes various base sequences in consideration of codon degeneracy. That is, it is selected from these various base sequences in consideration of various elements of the gene expression system, for example, preferential codons depending on the type of host cell, etc., and avoidance of higher-order structures formed by transcribed RNA. That's fine. The selected base sequence may be DNA cloned from the natural world or artificially chemically synthesized DNA.

<2> DNA encoding the raffinose synthase of the present invention
DNA encoding raffinose synthase can be obtained by preparing a cDNA library from poly (A) ⁺ RNA isolated from a plant body such as cucumber and screening the cDNA library by hybridization. . A probe used for hybridization can be obtained by amplification by PCR (polymerase chain reaction) using an oligonucleotide synthesized based on a partial amino acid sequence of raffinose synthase protein as a primer.

Hereinafter, a method for obtaining the DNA of the present invention from poly (A) ⁺ RNA derived from cucumber will be specifically described.
As the poly (A) ⁺ RNA extraction site, any cucumber plant body may be used as long as the raffinose synthase gene is expressed, and it is obtained from leaves, stems, strawberries, fruits, seeds, etc. in various growth stages. However, it is desirable to use the developed leaves after attaching the fruit, particularly the vein portion.

The method for extracting total RNA from cucumber tissue is not limited as long as RNA with low damage can be obtained efficiently. For example, any known method such as a phenol / SDS method, a guanidine isothiocyanate / cesium chloride method, or the like can be used. Is also possible. Total RNA thus obtained
Poly (A) ⁺ RNA can be separated from the DNA using an oligo (dT) carrier. Alternatively, a kit (MPG Direct mRNA Purification Kit, CPG, INC., Etc.) that can obtain poly (A) ⁺ RNA without extracting total RNA may be used.

A DNA fragment of a probe used for screening a cDNA library can be obtained by performing PCR. Single-stranded DNA having a base sequence deduced from the amino acid sequence of the already known peptide fragment, for example, the amino acid sequences shown in SEQ ID NOs: 1 to 3 in the sequence listing, is chemically synthesized, and PCR is performed using this as a primer. As the primer, any part of the amino acid sequence of the obtained peptide fragment may be used, but it is desirable to select a sequence that is less likely to form a complex higher order structure with less codon degeneracy. Also, RACE (Rapid
Amplification of cDNA End: PCR PROTOCOLS A Guide to Methods and Applications, ACADEMIC
press INC. p28-38) may be performed.

As such a PCR template, it is desirable to use a cDNA library or a single-stranded cDNA. When a thermostable DNA polymerase having reverse transcriptase activity is used in the PCR reaction, poly (A) ⁺ RNA, or in some cases, total RNA may be used.

In order to prepare a cDNA library, first, poly (A) ⁺ RNA is used as a template, oligo (dT) primer, random primer, etc. are used to synthesize single-stranded cDNA by reverse transcriptase, and then Gubra-Hoffman Double-stranded cDNA is synthesized by the (Gubler and Hoffman) method, the Okayama-Berg method (Molecular Cloning 2nd edition, Cold Spring Harbor press, 1989) and the like. When the expression level of the raffinose synthase gene is small, the cDNA may be amplified by PCR using a PCR library preparation kit (Capfinder PCR cDNA Library Construction Kit (CLONTECH) or the like). The cDNA synthesized in this way can be cloned into a cloning vector such as a phage vector or a plasmid by blunting, adding a linker, adding a restriction enzyme site by PCR, and the like.

  As a probe for hybridization, a portion characteristic of raffinose synthase cDNA is selected from the DNA fragments obtained by the above PCR. It is desirable to select a DNA fragment close to the 5 'end. The amplified DNA fragment thus selected is purified from the PCR reaction solution. At this time, the amplified DNA fragment can be subcloned using a plasmid, the plasmid is prepared in large quantities and then cleaved with a restriction enzyme, and the gel is cut out and purified after electrophoresis. Alternatively, PCR can be performed using the plasmid as a template. Only the target portion may be amplified and used. Furthermore, when the amount of the DNA fragment initially amplified is sufficiently large, the amplified DNA fragment is electrophoresed without subcloning, and the gel fragment containing the band of the target DNA fragment is excised and purified from the gel fragment. May be.

Hybridization is performed for screening to obtain the target clone from the cDNA library. The DNA fragment obtained by the above method can be labeled as a probe for hybridization. Various labels such as radioisotope and biotin can be used as the label, but it is desirable to label by a random priming method. In addition, PCR may be used for screening instead of hybridization. Furthermore, hybridization and PCR may be combined.
The base sequence of the DNA encoding the raffinose synthase derived from cucumber obtained as described above and the amino acid sequence deduced from this base sequence are exemplified in SEQ ID NO: 4 in the sequence listing. Further, only this amino acid sequence is shown in SEQ ID NO: 5. A transformant AJ13263 of Escherichia coli JM109 carrying the plasmid pMossloxCRS containing the DNA fragment containing the DNA encoding raffinose synthase obtained in Example 3 described later was introduced on November 19, 1996 by the Ministry of International Trade and Industry. It has been deposited internationally under the Budapest Treaty at the Institute of Biotechnology, Institute of Technology (Postal code 305, 1-3-1 Higashi 1-chome, Tsukuba City, Ibaraki Prefecture, Japan) and has been assigned the deposit number FERM BP-5748.

  Furthermore, a raffinose synthase gene can be obtained from another plant using the raffinose synthase gene obtained from one plant as described above. The plant for obtaining raffinose synthase may be any plant as long as it synthesizes raffinose described above, and examples thereof include soybean, broad bean, rapeseed, sunflower, cotton and sugar beet. As an example, acquisition of DNA encoding soybean raffinose synthase using DNA encoding cucumber-derived raffinose synthase will be described.

  As for the raffinose synthase gene of soybean, a cDNA library is prepared from poly (A) + RNA derived from soybean, and the cDNA library is prepared using a probe selected based on the base sequence of DNA encoding cucumber-derived raffinose synthase. It can be obtained by screening.

  The RNA extraction site may be anywhere in the soybean plant as long as raffinose synthase is expressed, but preferably at the time when raffinose family oligosaccharides are produced in seeds, particularly immature seeds after flowering. .

  In order to extract total RNA from immature soybean seeds, the method is not particularly limited as long as RNA with low damage can be efficiently obtained, and any of the methods described above with respect to cucumber can be used.

  The hybridization probe must have a sequence highly homologous to the soybean-derived raffinose synthase gene. The probe used for hybridization can be a cucumber-derived raffinose synthase gene, but it is desirable to use a conserved region of raffinose synthase as a probe. However, such a sequence cannot be identified from information on the cucumber-derived raffinose synthase gene. In order to obtain a hybridization probe having such a sequence, it is necessary to use several methods as follows. For convenience, each fragment obtained by cleaving the cucumber raffinose synthase gene with an appropriate restriction enzyme may be subjected to Northern hybridization to soybean RNA, and the hybridizing DNA fragment may be used as a probe. It can also be obtained by RT-PCR using soybean RNA as a template using primers synthesized based on the amino acid sequence of cucumber-derived raffinose synthase. In addition, it can be obtained by RT-PCR of Arabidopsis RNA using, as a primer, an oligonucleotide synthesized based on an Arabidopsis EST sequence that is homologous to DNA encoding cucumber-derived raffinose synthase.

Preferably, a gene having high homology with the target gene is obtained as follows. First, Gen
An EST sequence such as Arabidopsis thaliana having homology to the cucumber-derived raffinose synthase gene is searched from the Bank database using software such as Genetex Mac. The region having high homology between the obtained sequence and the cucumber raffinose synthase gene is considered to include a sequence conserved among raffinose synthases derived from various species. In order to obtain a DNA fragment of this region, for example, a single-stranded DNA prepared from Arabidopsis thaliana RNA is used as a template, and an oligonucleotide synthesized based on the sequence of a highly homologous region is used as a primer and amplified by PCR. be able to. Analyze the base sequence of this amplified fragment and select one having a sequence highly homologous to cucumber. The obtained DNA fragment is labeled and used as a probe as described above.

For screening to obtain the target clone from the cDNA library, hybridization is performed in the same manner as the cloning of the cucumber gene.
The nucleotide sequence of DNA encoding soybean-derived raffinose synthase obtained as described above and the amino acid sequence deduced from this nucleotide sequence are shown in SEQ ID NO: 23 in the sequence listing. Only this amino acid sequence is shown in SEQ ID NO: 24. The homology of soybean-derived raffinose synthase to the cucumber-derived raffinose synthase obtained by the above method was 38% for the amino acid sequence and 50% for the base sequence by the maximum matching considering the gap. A transformant AJ13379 of Escherichia coli JM109 carrying the plasmid pMOSSloxSRS containing the DNA fragment containing the DNA encoding raffinose synthase obtained in Example 4 described later was introduced on October 20, 1997 from the Ministry of International Trade and Industry. It has been deposited internationally based on the Budapest Treaty at the Institute of Biotechnology, Institute of Technology (Postal Code 305 Tsukuba 1-3, Tsukuba City, Japan) and has been assigned the deposit number FERM BP-6149.

A raffinose synthase gene can be obtained from other plants using information on cucumber-derived raffinose synthase and soybean-derived raffinose synthase. Amino acid sequences conserved in both proteins, for example, SEQ ID NO: 28 (amino acids 199 to 208 of SEQ ID NO: 24), 29 (amino acids 302 to 314 of SEQ ID NO: 24), 30 (amino acids 513 of SEQ ID NO: 24) ˜527) and the like, and single-stranded DNA having a base sequence complementary to the presumed base sequence are synthesized, and RT-PCR is performed using these as primers. . Any part of the above sequence may be used as a primer, but it is desirable to select a sequence that is less likely to form a complex higher order structure with less codon degeneracy. CDNA is synthesized from the total RNA of the plant from which the gene is to be obtained, and in some cases poly (A) ⁺ RNA, and PCR is performed using this as a template. The obtained DNA fragment is cloned into an appropriate vector and the nucleotide sequence is analyzed. This nucleotide sequence is homologous to the cucumber or soybean-derived raffinose synthase gene, or the translated amino acid sequence is synthesized from cucumber and soybean-derived raffinose. What is necessary is just to confirm whether it has the homology with the amino acid sequence of an enzyme. The DNA fragment thus obtained can be used for screening of a cDNA library. Alternatively, RACE may be carried out using a total RNA of a plant from which a gene is to be obtained, or in some cases, a single-stranded cDNA synthesized from poly (A) ⁺ RNA as a template.

  As long as the activity of the encoded raffinose synthase, that is, the activity of producing raffinose from sucrose and galactinol is not impaired, one or several amino acid substitutions, deletions at one or more positions, It may encode a raffinose synthase protein containing an insertion, addition, or inversion. Here, “several” differs depending on the position and type of the amino acid residue in the three-dimensional structure of the protein. This is because, depending on the amino acid, there are highly related amino acids such as isoleucine and valine, and such amino acid differences do not greatly affect the three-dimensional structure of the protein. Preferably, “several” is 2 to 40, preferably 2 to 20, and further 2 to 10.

It includes genes having a homology of about 50% or more in the full length of the gene and 65% or more of homology over about 300 bases. For such a gene, base sequence information can be obtained by searching for a gene having homology to a cucumber-derived raffinose synthase gene using a database such as GenBank. As the homology analysis program, GENEX-MAC (gene information processing software, software development company) adopting Lipman-Pearson method may be used, or those published on the Internet may be used. The base sequence obtained by such a method may or may not include the full length of the gene. When not including the full length of the gene, using RNA extracted from the target plant tissue as a template, using a primer corresponding to a site highly homologous to the cucumber-derived raffinose synthase gene, 5′RACE method, 3′RACE method, A full-length gene can be easily obtained. The obtained full-length gene is an appropriate expression vector provided by a kit such as Soluble Protein Expression System (INVITROGEN), Tight Control Expression System (INVITROGEN), or QIAexpress System (QIAGEN) as described above. And the gene is expressed, raffinose synthase activity is measured by the method described, and a clone having activity may be selected. The gene expression method is described in detail in Plant Molecular Biology, A Laboratory Manual (Melody S. Clark (Ed.), Springer) and the like.

  The DNA encoding the protein substantially identical to the raffinose synthase is modified by, for example, site-directed mutagenesis so that the amino acid at a specific site is substituted, deleted, inserted, or added. Can be obtained. The modified DNA as described above can also be obtained by a conventionally known mutation treatment. Mutation treatment includes a method of treating raffinose synthase-encoding DNA in vitro with hydroxylamine or the like, and Escherichia bacterium carrying the DNA encoding raffinose synthase using ultraviolet irradiation or N-methyl-N′-nitro. -N-nitrosoguanidine (NTG) or a method of treating with a mutagen usually used for artificial mutation such as nitrous acid.

  In addition, base substitution, deletion, insertion, addition, or inversion as described above may be based on individual differences in cucumber or soybean, differences between varieties, multiple copies of genes, differences in each organ or tissue. Naturally occurring mutations such as are also included.

  By expressing the DNA having the mutation as described above in an appropriate cell and examining the raffinose synthase activity of the expression product, DNA encoding a protein substantially the same as raffinose synthase can be obtained. Further, from a DNA encoding a mutated raffinose synthase or a cell holding the same, for example, a base sequence consisting of base numbers 56 to 2407, or a sequence number 23 among the base sequences set forth in SEQ ID NO: 4 in the sequence listing, or SEQ ID NO: 23 By isolating a DNA encoding a protein that hybridizes under stringent conditions with a DNA having a base sequence consisting of base numbers 156 to 2405 and having a raffinose synthase activity. In addition, DNA encoding a protein substantially identical to the raffinose synthase protein can be obtained. The “stringent conditions” referred to herein are conditions under which so-called specific hybrids are formed and non-specific hybrids are not formed. Although it is difficult to quantify these conditions clearly, for example, DNAs with high homology, for example, DNAs having 50% or more homology hybridize and DNA with lower homology than that. A salt corresponding to 60 ° C., 1 × SSC, 0.1% SDS, preferably 0.1 × SSC, 0.1% SDS, which does not hybridize with each other, or is a condition for washing of ordinary Southern hybridization Conditions for hybridizing at a concentration are mentioned. Genes that hybridize under these conditions include those that have generated stop codons along the way, and those that have lost activity due to mutations in the active center, but these are linked to commercially available active expression vectors. -Can be easily removed by measuring the synthase activity by the method described.

When the DNA of the present invention is used for expressing raffinose synthase antisense RNA, the DNA need not encode an active raffinose synthase. Also, sense RNA can suppress the function of homologous endogenous genes. In such a case, it is not necessary that the DNA encodes an active raffinose synthase gene, and it does not need to include the full length. Preferably, the translation region having a homology of 60% or more is 500 base pairs. It only has to be about. Examples of such DNA include the following DNA (e) or (f).
(E) A DNA that hybridizes under stringent conditions with a nucleotide sequence consisting of at least nucleotide numbers 56 to 2407 or a complementary nucleotide sequence thereof among the nucleotide sequences set forth in SEQ ID NO: 4 in the sequence listing.
(F) A DNA that hybridizes under stringent conditions with a nucleotide sequence consisting of at least nucleotide numbers 156 to 2405 or a complementary nucleotide sequence thereof among the nucleotide sequences set forth in SEQ ID NO: 23 in the Sequence Listing.

The method by which the present inventors have successfully cloned the cDNA of raffinose synthase derived from cucumber or soybean, which is the target, is as described above.
(1) A raffinose synthase derived from cucumber or soybean is isolated and purified, and the entire base sequence is chemically synthesized based on the determined amino acid sequence or the amino acid sequence shown in SEQ ID NO: 5 or 24.
(2) Chromosomal DNA is prepared from a cucumber or soybean plant, a chromosomal DNA library is prepared using a plasmid vector or the like, and a raffinose synthase gene is obtained from the library by hybridization or PCR. The raffinose synthase gene derived from a chromosome is expected to contain an intron in the coding region, but even if it is a DNA fragmented by such an intron, the DNA of the present invention can be used as long as it encodes raffinose synthase. include.
(3) Fraction in which poly (A) ⁺ RNA is fractionated by molecular weight, etc., and subjected to an in vitro translation system using wheat germ or rabbit reticulocyte, and mRNA encoding a polypeptide having raffinose synthase activity is present From this, a cDNA fragment of interest is prepared and obtained.
(4) Prepare an anti-cucumber raffinose synthase antibody or anti-soy raffinose synthase antibody, place the cDNA library on a protein expression vector, infect a suitable host to express the protein encoded by the cDNA, The target cDNA may be used for screening.
(5) An appropriate primer may be synthesized from the amino acid sequence of the peptide fragment, and the sequence including the terminal may be amplified by the RACE method and cloned.

  In order to express the raffinose synthase gene, DNA in the region encoding the enzyme may be incorporated into various expression vectors to express the gene. For details, see Plant Molecular Biology-A Laboratory Manual (MS Clark (eds .), Springer) and the like. A commercially available expression vector may be used as the vector. Confirmation of expression can be performed by measuring the activity by the method described herein.

As an example, a method for expressing raffinose synthase activity using a soybean-derived raffinose synthase gene will be described. Primers designed to contain the restriction enzyme site immediately after NdeI upstream of ATG at the 156th base of the raffinose synthase gene of pMOSSloxSRS, and the BamHI site downstream of the 2405th base. Add by PCR used. Next, the previous raffinose synthase gene purified with phenol chloroform and pET3a are digested with NdeI and BamHI. Each digested DNA is purified by agarose gel electrophoresis. Since a BamHI site exists in the soybean-derived raffinose synthase gene, mutations are introduced in advance by PCR or a fragment of the desired size is selected by agarose electrophoresis. The purified raffinose synthase fragment and the vector are ligated and confirmed on a gel. Furthermore, it is confirmed by nucleotide sequence analysis that the raffinose synthase gene starts from the ATG codon. This vector is designated as E. coli. E. coli BL21 (DE3) pLysE is selected and selected on LB medium containing chloramphenicol and ampicillin. The transformant is confirmed for its inserted fragment by PCR or the like, and the desired transformant is cultured in an LB medium to obtain bacterial cells. The cells are incubated in a gel loading buffer containing SDS at 100 ° C. for 3 minutes and electrophoresed on an SDS polyacrylamide gel to confirm a protein band of the desired size. The selected bacteria are cultured, the cells are broken by sonic or the like, and the protein is extracted. What is necessary is just to measure the raffinose synthase activity of this protein extract by the method as described in this specification.

<3> Method for Producing Raffinose of the Present Invention In the method for producing raffinose of the present invention, raffinose is produced by allowing the raffinose synthase to act on sucrose and galactinol. When raffinose synthase acts on sucrose and galactinol, the galactose residue constituting galactinol is transferred to sucrose to produce raffinose. In that case, myo-inositol which comprises galactinol produces | generates.

  The raffinose synthase used for the production of raffinose may be an enzyme extracted from a plant body or an enzyme produced by a genetic recombination method using the DNA of the present invention.

  To make raffinose synthase act on sucrose and galactinol, the column is packed with immobilized enzyme or immobilized cells in which raffinose synthase or raffinose synthase-producing cells are immobilized on a carrier such as alginate gel or polyacrylamide gel. Then, a solution containing sucrose and galactinol may be passed through this column. As a method for immobilizing a carrier and raffinose synthase or cells to the carrier, materials and methods used in ordinary bioreactors can be adopted.

  The raffinose synthesis reaction is performed, for example, by adding raffinose synthase to an aqueous solution or buffer solution containing sucrose and galactinol. The pH of the solution is preferably adjusted within the range of about 6 to 8, particularly around pH 7. The reaction temperature is about 28 to 42 ° C, preferably 35 to 40 ° C, and particularly preferably around 38 ° C. The raffinose synthase of the present invention is stable in the range of about pH 5 to 8, particularly around pH 6. The enzyme is stable at least in the temperature range of about 40 ° C. or lower.

In the raffinose synthase of the present invention, the enzyme activity is inhibited by iodoacetamide, N-ethylmaleimide, MnCl ₂ , ZnCl ₂ and NiCl ₂ , so it is desirable that these substances are not contained in the reaction solution.

  The concentration of galactinol and sucrose added to the reaction solution is preferably 5 mM or more and sucrose 1.5 mM or more. Further, the amount of raffinose synthase added to the reaction solution may be added according to the base mass.

  Examples of the method for separating raffinose from unreacted sucrose, galactinol and myo-inositol produced by the enzyme reaction contained in the reaction solution include gel filtration chromatography.

<4> Chimeric gene of the present invention and transformed plant The chimeric gene of the present invention comprises a raffinose synthase gene or a part thereof and a transcriptional control region that can be expressed in plant cells. Examples of the raffinose synthase gene include DNA encoding the raffinose synthase of the present invention described in <2> above. Furthermore, when the chimeric gene of the present invention is used as an antisense gene, in addition to DNA encoding raffinose synthase, an untranslated region of raffinose synthase gene or a part thereof may be used. is there. Examples of the non-translated region include, for example, nucleotide numbers 1 to 55 (5 ′ untranslated region) or sequences 2408 to 2517 (3 ′ untranslated region) in Sequence Listing SEQ ID NO: 4, and Examples include base numbers 1 to 155 or 2406 to 2765.

  In the chimeric gene of the present invention, when the transcription control region is linked to DNA encoding raffinose synthase so as to express mRNA (sense RNA) homologous to this DNA coding strand, this chimeric gene is introduced. The plant cells thus expressed express raffinose synthase and the raffinose family oligosaccharide content increases. On the other hand, when the transcription control region is linked to the DNA so as to express RNA (antisense RNA) having a sequence complementary to the coding strand of the DNA, and a part of the raffinose synthase gene When ligated to express a sense RNA for a fragment, preferably about 200 base pairs or more of the upstream coding region, plant cells into which these chimeric genes have been introduced have suppressed expression of endogenous raffinose synthase. , Raffinose family oligosaccharides are reduced.

  As described above, the raffinose group oligosaccharide content of the plant can be changed by transforming a plant with the chimeric gene of the present invention and expressing the gene in a plant cell.

  Examples of plants to which the present invention is applied include soybeans, rapeseed, cotton, sugar beet that produce sugar, sugarcane, and Arabidopsis as model plants.

  Examples of transcription control regions that can be expressed in plant cells include the CaMV 35SRNA promoter, CaMV 19SRNA promoter, nopaline synthase promoter, etc. that are expressed throughout the plant, the RubisCO small subunit promoter that is expressed in green tissues, etc. Examples thereof include promoter regions of genes such as napin and phaseolin that are expressed in a site-specific manner such as seeds. In addition, terminators such as nopaline synthase terminator and RubisCO small subunit 3 'side site may be linked to the 3' end of the chimeric gene.

  Methods commonly used for transforming plants with chimeric genes, such as the Agrobacterium method, particle gun method, electroporation method, and PEG method, may be used depending on the host cell to be tested.

Examples of transformation methods for introducing chimeric genes into plants include the Agrobacterium method, particle gun method, electroporation method, and PEG method.
A specific example of the Agrobacterium method is a method using a binary vector. That is, a plant is infected with a vector containing T-DNA derived from a Ti plasmid, a replication origin that can function in microorganisms such as E. coli, and a marker gene for selecting a plant cell or microorganism cell that holds the vector. The collected seed is grown, and a plant introduced with the vector is selected using the expression of the marker gene as an index. About the obtained plant, the target transformed plant can be obtained by measuring the raffinose synthase activity or selecting a plant with a changed raffinose oligosaccharide content.

Hereinafter, a method for introducing a chimeric gene into soybean will be described. For soybean transformation, the particle gun method (Pro. Natl. Acad. Sci. USA, 86, 145 (1989), TIBTECH, 8, 145
(1990), Bio / Technology, 6, 923 (1988), Plant Physiol., 87, 671 (1988), Develop.
Genetics, 11, 289 (1990), Plant cell Tissue & Organ Culture, 33, 227 (1993)), Agrobacterium method (Plant Physiol., 91, 1212 (1989), WO94 / 02620, Plant Mol.
Biol., 9, 135 (1987), Bio / Technology, 6, 915 (1988)), electroporation (Plant Physiol., 99, 81 (1992), Plant Physiol., 84, 856 (1989), Plant Any method of Cell Reports, 10, 97 (1991)) can be used.

  In the particle gun method, an embryogenic tissue or an embryonic axis of an immature seed 30 to 40 days after opening may be used. About 1 g of embryogenic tissue is spread on a Petri dish, and gold particles, tungsten particles, etc. coated with a daily chimeric gene may be implanted. The tissue is transferred to a liquid medium after 1 to 2 hours and cultured. Two weeks later, the cells are transferred to a medium containing antibiotics for selection of transformants and cultured. After 6 weeks, a green resistant somatic embryo is obtained, which is transferred to a new medium and cultured to regenerate the plant body. Alternatively, when the hypocotyl is used, the hypocotyl is aseptically removed, treated with a particle gun, and then MS medium containing a high concentration of cytokinin (Murashige and Skoog, Physiologia Plantrum, 15, 473-497 (1962) )). After culturing in the dark for 2 weeks, the cells are cultured in MS medium with reduced cytokinin content for 12 to 16 hours at room temperature under light irradiation. At this time, it is desirable to add the antibiotic used as the selection marker to the medium. When multi-buds are formed from the transplanted tissue, they are rooted by transferring to a medium without hormones. This young plant is transferred to the greenhouse and cultivated.

In the method using Agrobacterium, it is desirable to use Cotyldonary nod as the plant tissue. Commercially available LBA4404, C58, Z707, etc. can be used as agrobacterium, but Z707 is preferable. As the vector, a plasmid in which a target gene is inserted into pMON530 (Monsanto Co.) can be used. Agrobacterium tumefaciens Z707 (Hepburn et al., J) by the direct freeze thaw method (An et al., Plant Mol. Biol. Mannual A3: 1-19, 1988) and the like. , Gen. Microbiol, 131, 2961 (1985)). Agrobacterium transformed with this chimeric gene is cultured overnight, centrifuged at 5000 rpm for 5 minutes, and suspended in B5 suspension medium. Soybean seeds are sterilized, cultured in B5 medium at 1/10 concentration for 3 days, and germinated. The cotyledons are cut out and cultured for 2 hours in an Agrobacterium suspension. This cotyledon was added to B5 medium (Gamborg B5 salt (Exp. Cell. Res., 50, 151 (1968), Gamburg B5 vitamin, 3% sucrose, 5 μM benzylaminopurine, 10 μM IBA, 100 μM acetosyringone). Transfer and culture for 3 days under light irradiation (60 μEm ⁻² S ⁻¹ ) at 25 ° C. for 23 hours, and then remove B5 medium (5 μM benzylaminopurine, 100 mg / L carbenicillin to remove Agrobacterium. , 100 mg / L vancomycin, 500 mg / L cefataxime) for 4 days while changing the medium every day at 25 ° C. Thereafter, the cells are cultured in B5 medium (200 mg / L kanamycin) for 1 to 2 months. Multishoots are formed, which are cultured in B5 medium (0.58 mg / L gibberellin, 50 mg / L kanamycin) The shoots are elongated, then transferred to B5 medium (10 μM IBA) and rooted, and the rooted seedlings can be conditioned and grown in a greenhouse to obtain transformants.

  Confirmation of the transformed plant into which the raffinose synthase gene has been introduced can be easily confirmed by extracting DNA from the transformant and performing Southern hybridization using the raffinose synthase gene as a probe.

Hereinafter, the present invention will be described more specifically with reference to examples.
First, in the following examples, a method for measuring raffinose synthase activity used for confirmation of active fractions in each purification step and examination of enzyme characteristics will be described.

<Raffinose synthase activity measurement method>
The activity of raffinose synthase was determined by quantifying raffinose produced by the raffinose synthesis reaction by HPLC (high performance liquid chromatography). HPLC was performed using a sugar analysis system DX500 (CarboPac PA1 column, pulsed amperometry detector (Dionex)).

The raffinose synthesis reaction was carried out at 32 ° C. for 60 minutes by adding 10 to 50 μl of raffinose synthase solution to a reaction solution prepared so that the final concentration had the following composition to make 100 μl.
[Reaction solution composition (final concentration)]
2.5 mM sucrose
5 mM Galactinol
5 mM DTT
20 mM Tris-HCl buffer (pH 7.0)

  After carrying out the reaction as described above, 4 times the volume of ethanol of the reaction solution was added, and the reaction was stopped by heating at 95 ° C. for 30 seconds. This was centrifuged, and the centrifugal supernatant was dried under reduced pressure, dissolved in distilled water, and raffinose in the reaction product was quantified with a sugar analysis system to obtain raffinose enzyme activity.

[Example 1] Purification of raffinose synthase from cucumber <1> Extraction of raffinose synthase from cucumber From the cucumber (variety “SUYOU”) 6 to 10 weeks after sowing, the vein system was collected and liquid nitrogen was collected. The product was frozen and stored at -80 ° C. About 200 g of the frozen vein system is ground in a mortar under liquid nitrogen, and buffer 1 (40 mM Tris-HCl buffer (pH 7.0), 5 mM DTT, 1 mM PMSF (phenylmethanesulfonyl fluoride), 1% polyclar AT ; Manufactured by Selva), and the protein was extracted. The extract was filtered through a filter such as gauze or Miracloth (Calbiochem-Novobiochem), and the filtrate was centrifuged at about 30,000 × g for 60 minutes at 4 ° C. The obtained centrifugal supernatant was used as a crude extract.

<2> Anion exchange chromatography (1)
About 560 ml of the crude extract obtained above was equilibrated with buffer 2 (20 mM Tris-HCl buffer (pH 7.0), 5 mM DTT) and a strongly basic anion exchange chromatography column (HiTrapQ; Pharmacia). Manufactured, 1.6 cm × 2.5 cm) was applied to a connected column, and raffinose synthase activity was adsorbed on the column. Subsequently, the column was washed with 5 column volumes of buffer 3 (20 mM Tris-HCl buffer (pH 7.0), 0.2 M NaCl, 5 mM DTT) to wash away non-adsorbed protein, and then 50 ml of buffer solution. The raffinose synthase activity was extracted from the column with 4 (20 mM Tris-HCl buffer (pH 7.0), 0.3 M NaCl, 5 mM DTT).

<3> Anion exchange chromatography (2)
About 75 ml of the above eluate was placed in a dialysis tube (Pormembranes MWC O: 10,000; manufactured by Spectra), 10 L of Buffer 5 (20 mM Tris-HCl buffer (pH 7.0), 0.05 M NaCl, Dialyzed overnight at 4 ° C. against 5 mM DTT). The dialyzed sample was applied to a weakly basic anion exchange chromatography column (DEAE-TOYOPEARL; manufactured by Tosoh Corporation, 2.2 × 20 cm) equilibrated with buffer 5, and raffinose synthase activity was adsorbed onto the column. Subsequently, the column was washed with 5 times the volume of buffer solution 5 to wash away non-adsorbed protein, and then the enzyme activity was eluted by linearly applying a NaCl concentration gradient of 0.05 M to 0.35 M to 20 column volumes. It was fractionated.

<4> Gel Filtration Chromatography About 160 ml of the eluate obtained above was concentrated to 6.5 ml using a concentrator (centriprep 10; manufactured by Amicon). Each 3 ml of this concentrated solution was applied to a gel filtration chromatography column (Superdex 200 pg; 2.6 cm × 60 cm, manufactured by Pharmacia). Column equilibration and elution were performed using buffer 6 (20 mM Tris-HCl buffer (pH 7.0), 0.1 M NaCl, 5 mM DTT, 0.02% Tween 20). Among the fractions fractionated, fractions having raffinose synthase activity were collected.

<5> Hydroxyapatite chromatography About 25 ml of raffinose synthase active fraction fractionated by gel filtration is concentrated with Centriprep 10, and buffer 7 (0.01 M sodium phosphate buffer (pH 7.0) is further added. Buffer exchange was performed using 5 mM DTT, 0.02% Tween 20). About 1.2 ml of the obtained concentrated solution was applied to a hydroxyapatite column (Bio-Scale CHT-1; manufactured by Biorad, 0.7 × 5.2) previously equilibrated with the same buffer, and raffinose synthase. The activity was adsorbed. After washing the column with 5 times the column volume (10 ml) of the same buffer, the enzyme activity was eluted with a linear gradient of 0.01 M to 0.3 M phosphate concentration over 20 column volumes. I drew it.

<6> Hydroxyapatite Trichromatography The active fraction obtained by the hydroxyapatite chromatography obtained as described above was rechromatographed in the same manner to obtain a purified raffinose synthase fraction (about 2 ml).

  The amount of protein in this active fraction was about 200 μg. The total activity was 5700 nmol / hour, and the specific activity per protein was about 28 μmol / hour / mg. As will be described later, this active fraction contained only a protein showing a single band having a molecular weight of about 90 kDa to 100 kDa on electrophoresis. The specific activity of the obtained purified enzyme preparation was about 2000 times that of the crude extract, and the recovery rate with respect to the amount of enzyme after strong basic anion exchange chromatography with HiTrapQ was 12%. The results of purification are summarized in Table 1.

[Example 2] Examination of characteristics of raffinose synthase The characteristics of the purified raffinose synthase obtained in Example 1 were examined.

<1> Molecular Weight Measurement (1) Gel Filtration Chromatography 10 μl of purified raffinose synthase is taken, and this sample and a molecular weight marker (molecular weight marker kit for gel filtration: manufactured by Pharmacia) are used in a gel filtration chromatography column (Superdex 200 pg; manufactured by Pharmacia) ). Column equilibration and elution were performed using buffer 6 (20 mM Tris-HCl buffer (pH 7.0), 0.1 M NaCl, 5 mM DTT, 0.02% Tween 20). As a result, the molecular weight of raffinose synthase was estimated to be about 75 kDa to 95 kDa.

(2) Polyacrylamide gel electrophoresis (Native PAGE)
10 μl of purified raffinose synthase was taken, and the same amount of sample buffer (0.0625 M Tris-hydrochloric acid (pH 6.8), 15% glycerol, 0.001% BPB) was added to prepare an electrophoresis sample. 10 μl of this sample was applied to a 10% polyacrylamide gel (manufactured by Daiichi Chemicals Co., Ltd., Multigel 10), and electrophoresed with 0.025 M Tris-0.192 M glycine buffer (pH 8.4) at 40 mA for about 60 minutes. After the electrophoresis, the gel was stained with a sylveststein silver staining kit (manufactured by Nacalai Tesque). As a result, the molecular weight was estimated to be about 90 kDa to 100 kDa.

(3) SDS-polyacrylamide gel electrophoresis (SDS-PAGE)
Take 10 μl of purified raffinose synthase and add the same amount of sample buffer (0.0625M Tris-HCl (pH 6.8), 2% SDS, 10% glycerol, 5% mercaptoethanol, 0.001% BPB) to the boiling bath. The sample was heated for 1 minute to prepare an electrophoresis sample. 10 μl of this sample was applied to a 10-20% gradient polyacrylamide gel (manufactured by Daiichi Chemicals), 40 mA, about 70 with 0.025 M Tris-0.192 M glycine buffer (pH 8.4) containing 0.1% SDS. Electrophoresis was performed. After the electrophoresis, the gel was stained with a sylveststein silver staining kit (manufactured by Nacalai Tesque). The results are shown in FIG. As a result, the molecular weight was estimated to be about 90 kDa to 100 kDa.

<2> Optimum temperature of reaction Raffinose synthase activity under various temperature conditions (28 ° C., 32 ° C., 36 ° C., 40 ° C., 44 ° C., 48 ° C., 52 ° C.) according to the above-described method for measuring raffinose synthase activity. Was measured. The enzyme solution added to each reaction solution was 2 μl. The relative activity at each temperature when the enzyme activity at 32 ° C. is taken as 100 is shown in FIG. As a result, raffinose synthase showed activity in the range of about 25 to 42 ° C, and the optimum temperature for the reaction was around 35 to 40 ° C.

<3> Optimum reaction pH
Raffinose synthase activity was measured under various pH conditions (pH 4 to 11) according to the raffinose synthase activity measurement method described above. For each reaction, 50 mM citrate buffer (pH 4-6), 50 mM potassium phosphate buffer (pH 5.5-7.5), 50 mM bis-Tris buffer (pH 6-7), 20 mM Tris-HCl buffer (PH 7 to 8.5), 50 mM glycine-NaOH buffer (pH 9 to 11) was used. The enzyme solution added to each reaction solution was 2 μl. The results are shown in FIG.

  As a result, raffinose synthase showed activity in the range of pH 5-10, and the optimum reaction pH was around 6-8, although it varied depending on the type of buffer used.

<4> Examination of inhibitors and metal ions Various enzyme inhibitors or metal ions were added to the purified raffinose synthase reaction solution to a final concentration of 1 mM, and raffinose synthase activity was measured as described above. did. Table 2 shows the residual activity relative to the enzyme activity when no inhibitor or metal ion is added. Iodoacetamide significantly inhibited enzyme activity, and N-ethylmaleimide also showed an inhibitory effect. CaCl ₂ , CuCl ₂ and MgCl ₂ showed almost no inhibitory effect, but MnC
l ₂ , ZnCl ₂ and NiCl ₂ showed an inhibitory effect.

<5> Inhibition by myo-inositol Inhibition by myo-inositol, a reaction product of the raffinose synthesis reaction, was examined. Various concentrations of myo-inositol were added to the reaction solution, and raffinose synthase activity was measured. The results are shown in FIG. Enzyme activity was inhibited with the concentration of added myo-inositol.

<6> Stable pH
In the anion exchange chromatography (2) in 50 mM Bistris hydrochloride buffer (pH 5-8, containing 0.5 mM DTT) or 20 mM Tris-HCl buffer (pH 7-8, containing 0.5 mM DTT) The obtained raffinose synthase fraction was incubated at 4 ° C. for 4 hours, and then raffinose synthase activity was measured. The enzyme activity with respect to the pH of the buffer used for incubation is shown in FIG. Under any incubation condition, raffinose synthesis activity was observed, and it was particularly stable in the range of pH 5 to 7.5.

<7> Stable temperature The raffinose synthase fraction obtained by the anion exchange chromatography (2) in a 20 mM Tris-HCl buffer solution (containing pH 7, 5 mM DTT) is 28 ° C, 32 ° C, 37 ° C or After incubation at 40 ° C. for 60 minutes, raffinose synthase activity was measured. As a result, the present enzyme was stable with an activity of 80% to 100% compared to the control group in which the incubation treatment was not performed in the range of 28 ° C to 40 ° C.

<8> Analysis of amino acid sequence The cysteine residue of purified raffinose synthase was reduced to pyridylethyl and desalted. This was digested with lysyl endopeptidase (Achromobacter protease 1, manufactured by Wako Pure Chemical Industries, Ltd.) at 37 ° C. for 12 hours to obtain peptide fragments. The obtained peptide mixture was subjected to reverse phase HPLC (column: Waters μBondasphere (φ2.1 × 150 mm, _C18 , 300), manufactured by Waters (Millipore)) to separate and acquire each peptide fragment. The solvent was 0.1% TFA (trifluoroacetic acid), and elution was performed with an acetonitrile concentration gradient. Among the obtained peptide fragments, the amino acid sequences of three fragments were determined by a protein sequencer. The determined amino acid sequences of the peptides are shown in SEQ ID NOs: 1 to 3 in Sequence Listing. Hereinafter, these peptides are referred to as peptides 1, 2, and 3, respectively.

[Example 3] Obtaining DNA encoding raffinose synthase derived from cucumber <1> Isolation of partial fragment of raffinose synthase cDNA by PCR method 22 g of main cucumber veins were ground in liquid nitrogen using a mortar. This ground product was added to a mixture of an extraction buffer (100 mM lithium chloride, 100 mM Tris-hydrochloric acid (pH 8.0), 10 mM EDTA, 1% SDS) and an equal amount of phenol preheated to 80 ° C., and after stirring, An equivalent amount of chloroform: isoamyl alcohol (24: 1) was added, and the mixture was stirred again. This mixture was centrifuged at 9250 × g for 15 minutes at 4 ° C., and the supernatant was collected. This supernatant was repeatedly subjected to phenol treatment and chloroform: isoamyl alcohol treatment to obtain a centrifugal supernatant. An equal amount of 4M lithium chloride was added to the supernatant and allowed to stand at -70 ° C for 1 hour.

  After thawing at room temperature, the mixture was centrifuged at 9250 × g for 30 minutes at 4 ° C. to obtain a precipitate. This precipitate was washed once with 2M lithium chloride and 80% ethanol, dried and then dissolved in 2 ml of diethylpyrocarbonate-treated water to obtain purified total RNA. Total RNA obtained was 2.38 mg.

The total amount of this total RNA was subjected to a poly (A) ⁺ RNA purification kit (manufactured by STRATAGENE CLONING SYSTEMS) using an oligo (dT) cellulose column to purify poly (A) ⁺ RNA molecules, and 42.5 μg of poly ( A) ⁺ RNA was obtained.

Single-stranded cDNA was synthesized from poly (A) ⁺ RNA obtained as described above using reverse transcriptase Super Script II (manufactured by GIBCO BRL). In order to isolate raffinose synthase cDNA from this cDNA mixture, amplification by PCR was performed. As the primers used for PCR, single-stranded oligonucleotides (SEQ ID NOs: 6 to 22) shown in FIG. 7 were synthesized from the amino acid sequence of the peptide fragment of raffinose synthase derived from cucumber determined in Example 2. In each primer sequence, R is A or G, Y is C or T, M is A or C, K is G or T, D is G, A or T, H is A, T or C , B represents G, T or C, N represents G, A, T or C, or inosine (base is hypoxanthine), respectively.

  As a primer, A (A1 (SEQ ID NO: 6), A2 (SEQ ID NO: 7), A3 (SEQ ID NO: 8), A4 (SEQ ID NO: 9)) is used as the 5 ′ primer, and D ′ (D′ 1 is used as the 3 ′ primer. (SEQ ID NO: 21), D′ 2 (SEQ ID NO: 22)), 5 ′ primer with C2 (SEQ ID NO: 14)), and 3 ′ primer with B′1 (SEQ ID NO: 18), or B′2 When (SEQ ID NO: 19) was used, DNA of about 540 base pairs was amplified. This fragment was cloned into plasmid pCRII using TA cloning kit (manufactured by INVITROGEN BV) and analyzed for nucleotide sequence. As a result, nucleotide sequences encoding the amino acid sequences of peptides 1 and 2 inside the primer sequences at both ends. It was found that the amplified fragment was a DNA fragment derived from the raffinose synthase gene.

  Further, in order to specify the position of the cloned PCR-amplified DNA fragment on the raffinose synthase gene, 3 'RACE was performed using a RACE kit (3'Amplifier RACE Kit (manufactured by CLONTECH)).

PCR was performed using the cDNA mixture as a template, C (C1 (SEQ ID NO: 13), C2 (SEQ ID NO: 14)) as a 5 ′ primer, and a primer having an oligo (dT) and an anchor sequence as a 3 ′ primer. The amplified fragment thus obtained was used as a template, D (D1 (SEQ ID NO: 15), D2 (SEQ ID NO: 16)) located inside C was used as a 5 'primer, and an oligo ( PCR was performed using dT) -anchor primer. As a result, C
Only when PCR was carried out using DNA amplified with 1 (SEQ ID NO: 13), C2 (SEQ ID NO: 14) and oligo (dT) -anchor primer as template and D2 (SEQ ID NO: 16) and oligo (dT) -anchor primer A DNA fragment of about 2400 base pairs was amplified. Further, PCR was performed using C (C1 (SEQ ID NO: 13), C2 (SEQ ID NO: 14)) as the 5 ′ primer and an oligo (dT) -anchor primer as the 3 ′ primer, and the amplification thus obtained. PCR was performed using the fragment as a template, E (SEQ ID NO: 17) as the 5 ′ primer, and an oligo (dT) -anchor primer as the 3 ′ primer. As a result, in each case, a DNA fragment of about 300 base pairs was amplified.

  Similarly, A (A1 (SEQ ID NO: 6), A2 (SEQ ID NO: 7), A3 (SEQ ID NO: 8) or A4 (SEQ ID NO: 9)) as the 5 ′ primer and 3 ′ primer as the 5′-side primer using the cDNA mixture as a template PCR is performed using a primer having an oligo (dT) and an anchor sequence, and B (B1 (SEQ ID NO: 10) and B2 (SEQ ID NO: 11) located inside A are used with the amplified fragment thus obtained as a template. ) Or B3 (SEQ ID NO: 12)), and PCR was performed using the same oligo (dT) -anchor primer on the 3 ′ side. As a result, when any primer A was used, a DNA fragment of about 2000 base pairs was obtained when the B2 primer was used. Therefore, DNA fragments amplified using the A2 and B2 primers were cloned. When the base sequence was analyzed, the base sequence encoding the amino acid sequence of peptide fragment 1 used for primer preparation was present on the 5 'side. In addition, a poly (A) sequence and a base sequence corresponding to peptide fragment 3 existed upstream of the poly (A) sequence.

  When combined with the results of the previous PCR, the raffinose synthase peptide fragments are arranged in the order of 2, 1, 3 from the N-terminal side, and the DNA fragment of about 540 base pairs previously obtained by PCR is the raffinose synthesis. It was found to be a portion near the 5 ′ end on the enzyme gene. In order to screen a cDNA clone containing the full-length raffinose synthetic gene, it is desirable that the DNA used as a probe can detect a portion close to the 5 'end, so this DNA fragment was used as a probe for screening a cDNA library.

<2> Cloning of full length coding region of raffinose synthase cDNA First, a cDNA library was prepared as follows. Double-stranded cDNA was synthesized from 3.8 μg of poly (A) ⁺ RNA obtained in <1> using Time Saver cDNA synthesis kit (Pharmacia Biotech). The obtained cDNA is incorporated into an EcoRI restriction enzyme cleavage site of a λ phage vector λMOSSlox (Amersham), and then incorporated into a phage protein using a Gigapack II Gold packaging kit (STRATAGENE CLONING SYSTEMS). CDNA library was prepared. The titer of this library was 1.46 × 10 ⁷ pfu / μg vector.

After infecting the host cell Escherichia coli ER1647 with a phage corresponding to 1.4 × 10 ⁵ pfu from the above cucumber cDNA library, 1.0 × 10 ⁴ pfu per plate was prepared on 14 agar plates with a diameter of 90 mm. I asked to become. This was cultured at 37 ° C. for about 6.5 hours, and then the phage plaque formed on the plate was transferred to a nylon membrane (Hybond-N + manufactured by Amersham).

  Next, the nylon membrane was treated with alkali to denature and neutralize the transferred DNA, and then washed. Thereafter, the nylon membrane was treated at 80 ° C. for 2 hours to immobilize DNA on the membrane.

The resulting nylon membrane was screened for positive clones using the DNA fragment of about 540 base pairs obtained in <1> as a probe. The above-mentioned DNA fragment of about 540 base pairs was electrophoresed after digestion with the restriction enzyme EcoRI, and only the insert of about 540 base pairs was excised and purified to obtain a DNA label / detection system (Gene Images labeling / detection system (Amersham). ))) To obtain a probe. The nylon membrane was prehybridized at 60 ° C. for 30 minutes, and then a labeled probe was added and hybridization was performed at 60 ° C. for 16 hours. An antibody (alkaline phosphatase-labeled anti-fluorescein antibody) for detecting the labeled DNA was used after being diluted 50000 times. In this screening, candidate strains of positive clones were obtained. Screening of the obtained candidate strain was repeated twice in the same manner as described above to obtain a purified positive clone.

  The above positive clone was infected with Escherichia coli BM25.8 and cultured on a selective medium containing carbenicillin to cut out plasmid vector pMOSSlox-CRS containing cDNA. The length of the inserted cDNA of this plasmid was about 2.5 kb. Furthermore, enterococcus JM109 was transformed with this plasmid, plasmid DNA was prepared from the transformant, and this was used as a sample for analyzing the base sequence.

  The nucleotide sequence of the inserted cDNA was analyzed by a conventionally known method using Taq DyeDeoxy Terminator Cycle Sequencing Kit (Perkin-Elmer).

  As a result, a base sequence consisting of 2352 base pairs shown in SEQ ID NO: 4 in the sequence listing was revealed. In this sequence, there was a portion that coincided with the base sequence of the DNA probe used by the present inventors. The amino acid sequences translated from the base sequences are shown in SEQ ID NO: 4 and SEQ ID NO: 5. In this amino acid sequence, peptides 1 of raffinose synthase derived from cucumber obtained by the present inventors (amino acids 215 to 244 in SEQ ID NO: 5), 2 (amino acids 61 to 79 in SEQ ID NO: 5) and 3 It was confirmed that there was a portion that coincided with (amino acid numbers 756 to 769 in SEQ ID NO: 5) and encoded raffinose synthase.

  The transformant AJ13263 of Escherichia coli JM109 carrying the plasmid pMossloxCRS containing the DNA encoding the raffinose synthase obtained as described above was introduced on November 19, 1996 from the Ministry of International Trade and Industry, Institute of Industrial Science and Technology. It is deposited internationally based on the Budapest Treaty at the Industrial Technology Research Institute (Postal Code 305, 1-3 1-3 Higashi 1-chome, Tsukuba City, Ibaraki Prefecture, Japan) and has been assigned the deposit number FERM BP-5748.

[Example 4] Obtaining DNA encoding soybean-derived raffinose synthase <1> Search for probe for cloning of soybean-derived raffinose synthase gene Using the full-length cucumber-derived raffinose synthase gene as a probe, the total RNA for soybean Northern hybridization was performed. The probe is a DNA fragment containing a cucumber-derived raffinose synthase gene, the plasmid pMossloxCRS obtained in Example 3 is digested with the restriction enzyme NotI, subjected to agarose gel electrophoresis, the inserted fragment is isolated, and the isolated DNA Fragments were obtained by labeling with α-P ³² dCTP. As total RNA, 30 μg of total RNA prepared by the SDS-phenol method from immature soybean seeds (5 to 6 weeks after flowering) was used. After pre-hybridization for 30 minutes, the probe was added and hybridization was performed overnight at 42 ° C. Washing was performed under conditions of 1 × SSC, 0.1% SDS, 60 ° C. A signal of the control cucumber-derived raffinose synthase was observed, but no clear signal was obtained for soybean-derived RNA. It was determined that it would be desirable to use a more conserved region as a probe than to use the entire cucumber as a probe.

<2> Isolation of a partial fragment of raffinose synthase gene of Arabidopsis thaliana 125 mg of cocoons 17-20 days after flowering of Arabidopsis thaliana was ground in liquid nitrogen using a mortar. To this ground product was added 3 ml of 2 × CTAB (2% cetyltrimethylammonium bromide, 0.1 M Tris-HCl buffer (pH 9.5), 1.4 M NaCl, 0.5% mercaptoethanol) and diffused at 65 ° C. Shake for 10 minutes. This was transferred to Blue Max (50 ml) of a Falcon tube, 3 ml of chloroform: isoamyl alcohol (24: 1 (v / v)) was added, gently mixed, and centrifuged at 12,000 rpm for 10 minutes. The supernatant was extracted again with 3 ml of chloroform: isoamyl alcohol (24: 1 (v / v)) and centrifuged at 10,000 rpm for 25 minutes. To 1.8 ml of the centrifuged supernatant, 1.5 ml of isoamyl alcohol was added and mixed, and centrifuged at 12000 rpm for 15 minutes at 4 ° C. to obtain a precipitate. The precipitate was washed with 70% ethanol, dried, and dissolved in 1 ml of TE buffer. A quarter amount of 10M lithium chloride solution was added and mixed, allowed to stand in ice for 4 hours, and centrifuged at 12000 rpm for 15 minutes at 4 ° C. The precipitate was washed with 2M lithium chloride and 70% ethanol, dried, and dissolved in 100 μl of TE buffer. Phenol: chloroform (1: 1 (v / v)) was added and stirred, and centrifuged at 12000 rpm for 15 minutes at 4 ° C. to obtain an aqueous layer. This aqueous layer was subjected to ethanol precipitation. The precipitate was washed with 70% ethanol, dried, and dissolved in 10 μl of diethylpyrocarbonate-treated water to obtain total RNA. Total RNA obtained was 18.7 μg. Single-stranded cDNA was synthesized from this total RNA using reverse transcriptase SuperScriptII (GIBCO BRL).

  Primers were synthesized from this cDNA mixture to amplify a raffinose synthase gene partial fragment by PCR. Primers were searched for DNA having homology with the cucumber-derived raffinose synthase gene from Genebank, and synthesized as single-stranded oligonucleotides (SEQ ID NOs: 25 and 26) from the conserved region. When PCR was performed with this primer using the above single-stranded cDNA as a template, a DNA fragment of about 250 base pairs was amplified. When this fragment was cloned into plasmid pCR2.1 using a TA cloning kit (manufactured by INVITROGEN BV) and the nucleotide sequence was analyzed, the nucleotide sequence shown in SEQ ID NO: 27 was obtained. It was confirmed that an Arabidopsis thaliana-derived raffinose synthase cDNA partial fragment having homology with cucumber-derived raffinose synthase was obtained.

<3> Cloning of soybean-derived raffinose synthase cDNA 4.5 g of seeds 5 to 6 weeks after soybean flowering were ground in a mortar in liquid nitrogen. From the ground product, 1.3 mg of total RNA was extracted by SDS-phenol method. The extract was subjected to an oligo dT cellulose column (poly (A) ⁺ RNA purification kit: manufactured by STRATAGENE CLONING SYSTEMS), and about 6 μg of poly (A) ⁺ RNA was isolated. Of these, double-stranded cDNA was synthesized from about 2 μg of poly (A) ⁺ RNA using a TimeSaver cDNA synthesis kit (Pharmacia biotech) with an oligo dT primer. The obtained cDNA was incorporated into the EcoRI restriction enzyme cleavage site of λ phage vector λMOSSlox (Amersham) and then incorporated into phage particles using Gigapack III Gold packaging kit (STRATAGENE CLONING SYSTEMS). A library was prepared. The titer of this library was 1.42 × 10 ⁷ pfu / μg vector DNA.

Phage corresponding to 1.5 × 10 ⁵ pfu from the soybean cDNA library was transferred to a nylon membrane (Hybond-N ⁺ ; manufactured by Amersham) and fixed in the same manner as the cucumber cDNA library. Two sets were prepared by transferring two membranes to one plate. The obtained membrane was screened using the Arabidopsis thaliana-derived raffinose synthase cDNA gene partial fragment obtained in <2>. This DNA fragment was labeled with fluorescein using a Gene Images labeling detection system (manufactured by Amersham) as a probe. Hybridization and detection were performed in the same manner as the cucumber cDNA library screening. However, the membrane was washed with 1 set of 1 × SSC and 0.1% SDS and 1 set of 0.1 × SSC and 0.1% SDS at 60 ° C. 15 candidate clones of positive clones under both conditions were obtained, and 5 clones obtained by further repeating the screening once more in the same manner as described above were obtained.

  The positive clones were E. coli. Infecting E. coli BM25.8, the plasmid containing the cDNA was excised. Furthermore, with this plasmid, E. coli JM109 was transformed, plasmid DNA was prepared from the transformant, and used as a base sequence analysis sample. Base sequence analysis was performed in the same manner as the cucumber-derived raffinose synthase gene. PMOSSloxSRS, which is one of the 5 clones, was confirmed to contain the full length soybean-derived raffinose synthase gene by nucleotide sequence analysis.

  The insert fragment of pMOSSloxSRS had a sequence consisting of 2780 base pairs shown in SEQ ID NO: 23, and encoded a raffinose synthase consisting of 750 amino acids. The inserts of other clones were shorter than that of pMOSSloxSRS and lacked the 5 'side of the raffinose synthase gene.

  The transformant AJ13379 of Escherichia coli JM109 carrying the plasmid pMOSSloxSRS containing the DNA fragment containing the DNA encoding the raffinose synthase obtained as described above was introduced on October 20, 1997 from the Ministry of International Trade and Industry. It has been deposited internationally based on the Budapest Treaty at the Institute of Biotechnology, Institute of Technology (Postal Code 305 Tsukuba 1-3, Tsukuba City, Japan) and has been assigned the deposit number FERM BP-6149.

[Example 5] Chimeric gene containing DNA encoding raffinose synthase and transformed plant <1> Construction of plasmid containing chimera gene Using Agrobacterium LBA4404 and pBI121 (CLONTECH) as a binary vector, Arabidopsis thaliana A DNA fragment of raffinose synthase was introduced. pBI121 is a plasmid derived from pBIN19, a nopaline synthase gene promoter, a neomycin phosphotransferase structural gene (NPTII), a nopaline synthase gene terminator (Nos-ter), a CaMV 35S promoter, a GUS (β-glucuronidase) gene, and a Nos -Ters are connected and have a sequence on both sides of them that can be transferred to plants. There is a SmaI site downstream of the CaMV 35S promoter, and the insert inserted at this site is expressed under the control of the promoter.

  The cucumber-derived raffinose synthase gene fragment obtained in Example 3 was inserted into the binary vector pBI121. The raffinose synthase gene was digested with DraI, and a DNA fragment containing bases 1382 to 2529 in SEQ ID NO: 4 was prepared by agarose gel electrophoresis. This fragment was ligated to the SmaI site of pBI121. Escherichia coli HB101 was transformed using this ligation reaction solution, and a recombinant plasmid was prepared from the transformed strain. Among the obtained recombinant plasmids, two types were selected, one in which the raffinose synthase DNA fragment was connected to the CaMV 35S promoter in the reverse direction (antisense), and the one in the positive direction (sense), and pBIcRS1 And pBIcRS9.

In addition, a plasmid containing a chimeric gene for expressing raffinose synthase was constructed. PMOSSloxSRS containing a raffinose synthase gene was digested with NotI, and a raffinose synthase gene fragment was prepared by agarose gel electrophoresis. N of this DNA fragment
The otI cleavage site was filled in by Taq polymerase reaction using dNTP to obtain an SRS fragment having an A base protruding at the 3 ′ side. On the other hand, pBI121 was digested with SmaI, linear DNA was purified by agarose gel electrophoresis, and pBI121 / SmaI with a T base added to the 3 ′ side was obtained by Taq polymerase reaction using dTTP. After purification, the SRS fragment was ligated into pBI121 / SmaI. Escherichia coli HB101 was transformed with this ligation reaction solution. Plasmid DNA was prepared from the obtained transformant, and digested with restriction enzymes EcoRI, BamHI, and XhoI and combinations thereof. The molecular weight of the obtained fragment was measured by agarose electrophoresis, and a physical map was prepared. From the prepared physical map, a recombinant plasmid in which the raffinose synthase gene was connected in the positive direction with respect to the CaMV 35S promoter was selected and named pBIsRS1.

  The plasmid obtained as described above was introduced into Agrobacterium LBA4404 by triparental mating of S. coli HB101 containing these and Agrobacterium LBA4404.

<2> Transformation Arabidopsis thaliana was transformed as follows. Arabidopsis thaliana seeds were treated with water absorption after treatment with 80% ethanol containing 1% Tween 20 for 5 minutes, 10% sodium hypochlorite containing 1% Tween 20 for 10 minutes, and then 5 times with sterile water. Washed and sterilized. This was suspended in 1% low melting point agarose, MS medium (MS basic medium (Murashige and Skoog, Physiologia Plantrum, 15, 473-497 (1962)), B5 vitamin, 10 g / L sucrose 0.5 g / L MES, I went to pH 5.8). This was cultured for 1 week in a culture room of 22 ° C., 16 hours of light irradiation, and 8 hours of dark period, and what Futaba developed was planted in rock wool. Cultivation was continued under the same conditions, and after about 3 weeks, the plants were drawn out, and when the stalk height reached several centimeters, pinching was performed. One week after pinching, the plants were grown until the first flower of the elongated side branch was in bloom.

Agrobacterium precultured with a recombinant plasmid containing a raffinose synthase gene was performed in 2 ml of LB medium. This was inoculated into LB medium containing 50 mg / L kanamycin and 25 mg / L streptomycin and cultured at 28 ° C. for about 1 day. Collected at room temperature, suspension medium for infiltration (1/2 MS salt, 1/2 Gamborg B5 vitamin, 5% sucrose, 0.5 g / L MES, pH 5.7 (KOH), benzylamino just before use. Purine was suspended in a final concentration of 0.044 μM and Silwet (Silwet L77) was added to 200 μl per liter (final concentration of 0.02%) so that the OD ₆₀₀ of the bacterial solution was 0.8.

  The flowering and fruiting was removed from the infiltrating plant. The rock wool was turned upside down, and the flowers that did not bear fruit were dipped in the Agrobacterium suspension, placed in a desiccator, and decompressed at 40 mmHG for 15 minutes. Seeds were collected in 2 to 4 weeks. The harvested seeds were stored in a desiccator.

  Next, transformants were selected using a selection medium. Seed sterilization as described above, selection medium (MS salt, Gambol B5 vitamin, 1% sucrose, 0.5 g / L MES, pH 5.8, 0.8% agar; after autoclaving, antibiotics for selection , Cultured in carbenicillin (final concentration 100 mg / L, kanamycin (final concentration 50 mg / L) added) at 22 ° C., and selected resistant plants.The resistant plants were transferred to a new medium and grown until the true leaves developed. The seeds were harvested from this plant, and the same selection was repeated to obtain T3 seeds.The raffinose content of the T3 seeds was quantified by the method described above.

The figure which shows the relationship between the amount of raffinose produced | generated by raffinose synthesis reaction, and reaction time. The schematic diagram which shows the result of SDS-polyacrylamide gel electrophoresis of raffinose synthase. M represents a molecular weight marker, and S represents a sample containing raffinose synthase. Numbers represent molecular weight (kDa). The figure which shows the influence of reaction temperature with respect to raffinose synthase activity. The figure which shows the influence of reaction pH with respect to raffinose synthase activity. The figure which shows the influence of myo-inositol with respect to raffinose synthase activity. The figure which shows the stable pH range of raffinose synthase. The figure which shows the relationship between a synthetic primer and the amino acid sequence of a peptide. R is A or G, Y is C or T, M is A or C, K is G or T, D is G, A or T, H is A, T or C, B is G, T or C, N represents G, A, T or C, and I represents inosine.

Claims (11)

A raffinose synthase which is a protein having the amino acid sequence set forth in SEQ ID NO: 24 in the Sequence Listing . A method for producing raffinose, wherein raffinose is produced by allowing the raffinose synthase according to claim 1 to act on sucrose and galactinol. A DNA encoding the raffinose synthase according to claim 1. DNA encoding a protein having the amino acid sequence set forth in SEQ ID NO: 24 in the Sequence Listing . The DNA according to claim 4, which is a DNA comprising a base sequence consisting of at least base numbers 156 to 2405 among the base sequences set forth in SEQ ID NO: 23 in the sequence listing . A chimeric gene comprising a raffinose synthase gene or a portion that can be used as an antisense gene thereof, and a transcription control region that can be expressed in a plant cell, wherein the raffinose synthase gene is any one of claims 3 to 5. The chimeric gene which is the DNA described in 1. The transcription control region is used as the raffinose synthase gene or its antisense gene so as to express an antisense RNA having a sequence complementary to the coding strand of the raffinose synthase gene or a portion of the gene that can be used as its antisense gene. The chimeric gene according to claim 6, which is linked to a portion capable of being formed. A plant transformed with the chimeric gene according to claim 6 or 7 . A method for changing the raffinose family oligosaccharide content of the plant by transforming the plant with the chimeric gene according to claim 6 or 7 and expressing the gene in a plant cell. A plant transformed with the DNA according to any one of claims 3 to 5. A method of changing the raffinose group oligosaccharide content of the plant by transforming the plant with the DNA according to any one of claims 3 to 5 and expressing the DNA in a plant cell.

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